A9D66_00005	SM00382	ATPases associated with a variety of cellular activities
A9D66_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
A9D66_00010	SM00480	DNA polymerase III beta subunit
A9D66_00020	SM00387	Histidine kinase-like ATPases
A9D66_00020	SM00433	TopoisomeraseII
A9D66_00035	SM00028	Tetratricopeptide repeats
A9D66_00070	SM00155	Phospholipase D. Active site motifs.
A9D66_00085	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_00115	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9D66_00115	SM00245	tail specific protease
A9D66_00160	SM00829	Enoylreductase
A9D66_00285	SM00382	ATPases associated with a variety of cellular activities
A9D66_00400	SM00487	DEAD-like helicases superfamily
A9D66_00400	SM00490	helicase superfamily c-terminal domain
A9D66_00430	SM00822	A9D66_00430
A9D66_00630	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
A9D66_00655	SM00421	helix_turn_helix, Lux Regulon
A9D66_00655	SM00448	cheY-homologous receiver domain
A9D66_00675	SM00028	Tetratricopeptide repeats
A9D66_00675	SM00862	Transcriptional regulatory protein, C terminal
A9D66_00735	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_00740	SM00642	Alpha-amylase domain
A9D66_00745	SM00642	Alpha-amylase domain
A9D66_00750	SM00642	Alpha-amylase domain
A9D66_00800	SM00354	helix_turn _helix lactose operon repressor
A9D66_00840	SM00344	helix_turn_helix ASNC type
A9D66_00860	SM00382	ATPases associated with a variety of cellular activities
A9D66_00875	SM00382	ATPases associated with a variety of cellular activities
A9D66_00915	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_00945	SM00855	Phosphoglycerate mutase family
A9D66_00950	SM00867	YceI-like domain 
A9D66_00955	SM00155	Phospholipase D. Active site motifs.
A9D66_00965	SM00563	Phosphate acyltransferases
A9D66_00980	SM00028	Tetratricopeptide repeats
A9D66_00990	SM00829	Enoylreductase
A9D66_01005	SM01230	A9D66_01005
A9D66_01010	SM00938	Nitrogen regulatory protein P-II
A9D66_01020	SM00387	Histidine kinase-like ATPases
A9D66_01020	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_01025	SM00382	ATPases associated with a variety of cellular activities
A9D66_01025	SM00448	cheY-homologous receiver domain
A9D66_01090	SM00450	Rhodanese Homology Domain
A9D66_01135	SM00257	Lysin motif
A9D66_01140	SM00028	Tetratricopeptide repeats
A9D66_01220	SM00382	ATPases associated with a variety of cellular activities
A9D66_01275	SM00387	Histidine kinase-like ATPases
A9D66_01275	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_01280	SM00382	ATPases associated with a variety of cellular activities
A9D66_01280	SM00448	cheY-homologous receiver domain
A9D66_01395	SM00563	Phosphate acyltransferases
A9D66_01435	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_01460	SM00100	Cyclic nucleotide-monophosphate binding domain
A9D66_01460	SM00267	diguanylate cyclase
A9D66_01485	SM00878	Biotin carboxylase C-terminal domain
A9D66_01510	SM00953	A9D66_01510
A9D66_01550	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A9D66_01580	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_01615	SM00829	Enoylreductase
A9D66_01645	SM00487	DEAD-like helicases superfamily
A9D66_01645	SM00490	helicase superfamily c-terminal domain
A9D66_01645	SM00847	Helicase associated domain (HA2)  Add an annotation
A9D66_01780	SM00422	helix_turn_helix, mercury resistance
A9D66_01815	SM00448	cheY-homologous receiver domain
A9D66_01815	SM00862	Transcriptional regulatory protein, C terminal
A9D66_01820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_01820	SM00387	Histidine kinase-like ATPases
A9D66_01820	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_02020	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_02025	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_02045	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_02075	SM00420	helix_turn_helix, Deoxyribose operon repressor
A9D66_02075	SM01134	A9D66_02075
A9D66_02090	SM00882	Coenzyme A transferase
A9D66_02095	SM00882	Coenzyme A transferase
A9D66_02115	SM00998	Adenylosuccinate lyase C-terminus
A9D66_02135	SM00346	helix_turn_helix isocitrate lyase regulation
A9D66_02140	SM00090	RIO-like kinase
A9D66_02155	SM01228	A9D66_02155
A9D66_02210	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_02210	SM00876	Biotin and Thiamin Synthesis associated domain
A9D66_02230	SM00369	Leucine-rich repeats, typical (most populated) subfamily
A9D66_02325	SM00382	ATPases associated with a variety of cellular activities
A9D66_02390	SM00267	diguanylate cyclase
A9D66_02400	SM00642	Alpha-amylase domain
A9D66_02405	SM00642	Alpha-amylase domain
A9D66_02415	SM00642	Alpha-amylase domain
A9D66_02425	SM00642	Alpha-amylase domain
A9D66_02460	SM00487	DEAD-like helicases superfamily
A9D66_02460	SM00490	helicase superfamily c-terminal domain
A9D66_02470	SM00326	Src homology 3 domains
A9D66_02475	SM00861	Transketolase, pyrimidine binding domain
A9D66_02485	SM00237	Domains in Na-Ca exchangers and integrin-beta4
A9D66_02505	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_02605	SM00271	DnaJ molecular chaperone homology domain
A9D66_02625	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A9D66_02645	SM00903	Flavin reductase like domain
A9D66_02665	SM00100	Cyclic nucleotide-monophosphate binding domain
A9D66_02665	SM00419	helix_turn_helix, cAMP Regulatory protein
A9D66_02720	SM00387	Histidine kinase-like ATPases
A9D66_02720	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_02720	SM00448	cheY-homologous receiver domain
A9D66_02725	SM00052	Putative diguanylate phosphodiesterase
A9D66_02725	SM00267	diguanylate cyclase
A9D66_02725	SM00448	cheY-homologous receiver domain
A9D66_02780	SM00563	Phosphate acyltransferases
A9D66_02805	SM01209	A9D66_02805
A9D66_02805	SM01210	A9D66_02805
A9D66_02815	SM00798	AICARFT/IMPCHase bienzyme
A9D66_02815	SM00851	MGS-like domain
A9D66_02830	SM00195	Dual specificity phosphatase, catalytic domain
A9D66_02850	SM00563	Phosphate acyltransferases
A9D66_02875	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_02900	SM00878	Biotin carboxylase C-terminal domain
A9D66_02930	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_02940	SM00234	in StAR and phosphatidylcholine transfer protein
A9D66_02965	SM00883	Chaperonin 10 Kd subunit
A9D66_03025	SM00944	Pro-kumamolisin, activation domain
A9D66_03040	SM00867	YceI-like domain 
A9D66_03095	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A9D66_03105	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_03105	SM00895	A9D66_03105
A9D66_03125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_03125	SM00331	Sigma factor PP2C-like phosphatases
A9D66_03210	SM00822	A9D66_03210
A9D66_03270	SM00267	diguanylate cyclase
A9D66_03300	SM00062	Bacterial periplasmic substrate-binding proteins
A9D66_03340	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A9D66_03340	SM01232	A9D66_03340
A9D66_03355	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_03365	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_03365	SM00091	PAS domain
A9D66_03365	SM00267	diguanylate cyclase
A9D66_03370	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_03370	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_03370	SM01049	A9D66_03370
A9D66_03375	SM00637	A9D66_03375
A9D66_03385	SM00267	diguanylate cyclase
A9D66_03410	SM00448	cheY-homologous receiver domain
A9D66_03410	SM00850	LytTr DNA-binding domain
A9D66_03490	SM00382	ATPases associated with a variety of cellular activities
A9D66_03490	SM01086	C-terminal, D2-small domain, of ClpB protein
A9D66_03520	SM00267	diguanylate cyclase
A9D66_03525	SM01263	A9D66_03525
A9D66_03545	SM00564	beta-propeller repeat
A9D66_03550	SM00062	Bacterial periplasmic substrate-binding proteins
A9D66_03550	SM00248	ankyrin repeats
A9D66_03565	SM00829	Enoylreductase
A9D66_03575	SM00382	ATPases associated with a variety of cellular activities
A9D66_03585	SM00268	Actin
A9D66_03610	SM00710	Parallel beta-helix repeats
A9D66_03630	SM00936	Penicillin-binding protein 5, C-terminal domain 
A9D66_03650	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_03655	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9D66_03655	SM00245	tail specific protease
A9D66_03710	SM01350	A9D66_03710
A9D66_03720	SM00749	bacterial OsmY and nodulation domain
A9D66_03725	SM00387	Histidine kinase-like ATPases
A9D66_03725	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_03730	SM00448	cheY-homologous receiver domain
A9D66_03735	SM00387	Histidine kinase-like ATPases
A9D66_03735	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_03735	SM00448	cheY-homologous receiver domain
A9D66_03770	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A9D66_03795	SM00382	ATPases associated with a variety of cellular activities
A9D66_03865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_03865	SM00866	A9D66_03865
A9D66_03875	SM00354	helix_turn _helix lactose operon repressor
A9D66_03945	SM00849	Metallo-beta-lactamase superfamily
A9D66_03950	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_03960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_03960	SM00387	Histidine kinase-like ATPases
A9D66_03960	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_03965	SM00448	cheY-homologous receiver domain
A9D66_03965	SM00862	Transcriptional regulatory protein, C terminal
A9D66_03985	SM00829	Enoylreductase
A9D66_04005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_04025	SM00382	ATPases associated with a variety of cellular activities
A9D66_04085	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
A9D66_04115	SM00387	Histidine kinase-like ATPases
A9D66_04115	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_04120	SM00448	cheY-homologous receiver domain
A9D66_04120	SM00862	Transcriptional regulatory protein, C terminal
A9D66_04235	SM00842	Cell division protein FtsA
A9D66_04240	SM00864	Tubulin/FtsZ family, GTPase domain
A9D66_04240	SM00865	Tubulin/FtsZ family, C-terminal domain
A9D66_04260	SM00957	SecA DEAD-like domain
A9D66_04260	SM00958	SecA preprotein cross-linking domain
A9D66_04285	SM00829	Enoylreductase
A9D66_04290	SM00944	Pro-kumamolisin, activation domain
A9D66_04305	SM00642	Alpha-amylase domain
A9D66_04340	SM00996	S-adenosyl-L-homocysteine hydrolase
A9D66_04340	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A9D66_04455	SM00382	ATPases associated with a variety of cellular activities
A9D66_04475	SM00382	ATPases associated with a variety of cellular activities
A9D66_04485	SM00448	cheY-homologous receiver domain
A9D66_04485	SM00862	Transcriptional regulatory protein, C terminal
A9D66_04490	SM00387	Histidine kinase-like ATPases
A9D66_04490	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_04545	SM00382	ATPases associated with a variety of cellular activities
A9D66_04555	SM00382	ATPases associated with a variety of cellular activities
A9D66_04620	SM00382	ATPases associated with a variety of cellular activities
A9D66_04635	SM00650	Ribosomal RNA adenine dimethylases
A9D66_04700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_04700	SM00895	A9D66_04700
A9D66_04735	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_04820	SM00448	cheY-homologous receiver domain
A9D66_04825	SM00387	Histidine kinase-like ATPases
A9D66_04825	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_04825	SM00448	cheY-homologous receiver domain
A9D66_04830	SM00421	helix_turn_helix, Lux Regulon
A9D66_04895	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A9D66_04895	SM00475	5'-3' exonuclease
A9D66_04930	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A9D66_04930	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A9D66_05040	SM00852	Probable molybdopterin binding domain
A9D66_05045	SM00028	Tetratricopeptide repeats
A9D66_05050	SM00937	A9D66_05050
A9D66_05060	SM00028	Tetratricopeptide repeats
A9D66_05080	SM01400	A9D66_05080
A9D66_05130	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A9D66_05130	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A9D66_05135	SM00649	Ribosomal protein L11/L12
A9D66_05160	SM00663	RNA polymerase I subunit A N-terminus
A9D66_05175	SM00838	Elongation factor G C-terminus
A9D66_05175	SM00889	Elongation factor G, domain IV
A9D66_05185	SM01403	A9D66_05185
A9D66_05205	SM01382	A9D66_05205
A9D66_05205	SM01383	A9D66_05205
A9D66_05220	SM00322	K homology RNA-binding domain
A9D66_05240	SM01374	A9D66_05240
A9D66_05245	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A9D66_05305	SM00363	S4 RNA-binding domain
A9D66_05305	SM01390	A9D66_05305
A9D66_05310	SM00662	RNA polymerases D
A9D66_05355	SM00838	Elongation factor G C-terminus
A9D66_05385	SM00829	Enoylreductase
A9D66_05435	SM00382	ATPases associated with a variety of cellular activities
A9D66_05445	SM00829	Enoylreductase
A9D66_05475	SM00855	Phosphoglycerate mutase family
A9D66_05525	SM00014	Acid phosphatase homologues
A9D66_05545	SM00091	PAS domain
A9D66_05545	SM00387	Histidine kinase-like ATPases
A9D66_05545	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_05550	SM00448	cheY-homologous receiver domain
A9D66_05550	SM00862	Transcriptional regulatory protein, C terminal
A9D66_05570	SM01329	A9D66_05570
A9D66_05675	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_05830	SM00954	Region found in RelA / SpoT proteins
A9D66_05845	SM00387	Histidine kinase-like ATPases
A9D66_05865	SM00382	ATPases associated with a variety of cellular activities
A9D66_05865	SM00994	ClpX C4-type zinc finger
A9D66_05865	SM01086	C-terminal, D2-small domain, of ClpB protein
A9D66_05870	SM00382	ATPases associated with a variety of cellular activities
A9D66_05870	SM00464	Found in ATP-dependent protease La (LON)
A9D66_05875	SM00411	bacterial (prokaryotic) histone like domain
A9D66_05900	SM00257	Lysin motif
A9D66_05905	SM00849	Metallo-beta-lactamase superfamily
A9D66_05920	SM00479	A9D66_05920
A9D66_05925	SM00331	Sigma factor PP2C-like phosphatases
A9D66_05925	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A9D66_05950	SM00849	Metallo-beta-lactamase superfamily
A9D66_05955	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_05990	SM00382	ATPases associated with a variety of cellular activities
A9D66_06000	SM00493	A9D66_06000
A9D66_06015	SM00460	Transglutaminase/protease-like homologues
A9D66_06025	SM00382	ATPases associated with a variety of cellular activities
A9D66_06070	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A9D66_06075	SM00822	A9D66_06075
A9D66_06085	SM00825	Beta-ketoacyl synthase
A9D66_06140	SM00382	ATPases associated with a variety of cellular activities
A9D66_06185	SM01359	A9D66_06185
A9D66_06185	SM01360	A9D66_06185
A9D66_06220	SM00271	DnaJ molecular chaperone homology domain
A9D66_06225	SM00448	cheY-homologous receiver domain
A9D66_06230	SM00244	prohibitin homologues
A9D66_06235	SM00244	prohibitin homologues
A9D66_06240	SM01321	A9D66_06240
A9D66_06245	SM00788	Adenylosuccinate synthetase
A9D66_06260	SM00822	A9D66_06260
A9D66_06270	SM00487	DEAD-like helicases superfamily
A9D66_06300	SM00220	Serine/Threonine protein kinases, catalytic domain
A9D66_06315	SM00855	Phosphoglycerate mutase family
A9D66_06375	SM00052	Putative diguanylate phosphodiesterase
A9D66_06380	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_06390	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A9D66_06395	SM01092	CO dehydrogenase flavoprotein C-terminal domain
A9D66_06410	SM00974	A9D66_06410
A9D66_06430	SM00966	SpoVT / AbrB like domain 
A9D66_06450	SM00481	DNA polymerase alpha chain like domain
A9D66_06460	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_06505	SM00091	PAS domain
A9D66_06505	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_06520	SM01060	A9D66_06520
A9D66_06570	SM00448	cheY-homologous receiver domain
A9D66_06570	SM00862	Transcriptional regulatory protein, C terminal
A9D66_06575	SM00387	Histidine kinase-like ATPases
A9D66_06575	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_06615	SM00421	helix_turn_helix, Lux Regulon
A9D66_06615	SM00448	cheY-homologous receiver domain
A9D66_06630	SM00478	endonuclease III
A9D66_06650	SM00244	prohibitin homologues
A9D66_06735	SM00904	Riboflavin kinase
A9D66_06780	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9D66_06785	SM00382	ATPases associated with a variety of cellular activities
A9D66_06795	SM00862	Transcriptional regulatory protein, C terminal
A9D66_06800	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_06840	SM00387	Histidine kinase-like ATPases
A9D66_06840	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_06845	SM00387	Histidine kinase-like ATPases
A9D66_06845	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_06845	SM00448	cheY-homologous receiver domain
A9D66_06870	SM00387	Histidine kinase-like ATPases
A9D66_06870	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_06870	SM00448	cheY-homologous receiver domain
A9D66_06880	SM00138	Methyltransferase, chemotaxis proteins 
A9D66_06885	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_06885	SM00387	Histidine kinase-like ATPases
A9D66_06885	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_06885	SM00448	cheY-homologous receiver domain
A9D66_06890	SM00091	PAS domain
A9D66_06890	SM00387	Histidine kinase-like ATPases
A9D66_06890	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_06895	SM00448	cheY-homologous receiver domain
A9D66_06905	SM00813	Alpha-L-arabinofuranosidase C-terminus
A9D66_06925	SM00382	ATPases associated with a variety of cellular activities
A9D66_06925	SM00962	SRP54-type protein, GTPase domain
A9D66_06925	SM00963	SRP54-type protein, helical bundle domain
A9D66_07000	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A9D66_07000	SM00534	ATPase domain of DNA mismatch repair MUTS family
A9D66_07035	SM00812	Alpha-L-fucosidase
A9D66_07060	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_07110	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9D66_07115	SM00838	Elongation factor G C-terminus
A9D66_07130	SM00358	Double-stranded RNA binding motif
A9D66_07130	SM00535	Ribonuclease III family
A9D66_07145	SM00448	cheY-homologous receiver domain
A9D66_07155	SM01118	A9D66_07155
A9D66_07190	SM00357	Cold shock protein domain
A9D66_07210	SM00487	DEAD-like helicases superfamily
A9D66_07210	SM00490	helicase superfamily c-terminal domain
A9D66_07240	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_07240	SM00267	diguanylate cyclase
A9D66_07260	SM00869	Autotransporter beta-domain
A9D66_07265	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A9D66_07270	SM00671	Sel1-like repeats.
A9D66_07270	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A9D66_07475	SM00382	ATPases associated with a variety of cellular activities
A9D66_07560	SM00481	DNA polymerase alpha chain like domain
A9D66_07600	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9D66_07630	SM00267	diguanylate cyclase
A9D66_07655	SM00972	Spore Coat Protein U domain
A9D66_07670	SM00972	Spore Coat Protein U domain
A9D66_07680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_07700	SM01172	A9D66_07700
A9D66_07705	SM00710	Parallel beta-helix repeats
A9D66_07705	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
A9D66_07730	SM00434	DNA Topoisomerase IV
A9D66_07735	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_07740	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_07765	SM01217	A9D66_07765
A9D66_07770	SM00631	A9D66_07770
A9D66_07800	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_07820	SM00382	ATPases associated with a variety of cellular activities
A9D66_07835	SM00947	Carbonic anhydrase
A9D66_07850	SM00357	Cold shock protein domain
A9D66_07965	SM00267	diguanylate cyclase
A9D66_07975	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_07975	SM00267	diguanylate cyclase
A9D66_08000	SM00528	Domain in histone-like proteins of HNS family
A9D66_08035	SM00248	ankyrin repeats
A9D66_08135	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_08255	SM00271	DnaJ molecular chaperone homology domain
A9D66_08295	SM00382	ATPases associated with a variety of cellular activities
A9D66_08320	SM00861	Transketolase, pyrimidine binding domain
A9D66_08330	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A9D66_08350	SM01091	Transporter associated domain
A9D66_08380	SM00382	ATPases associated with a variety of cellular activities
A9D66_08385	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_08400	SM00984	UDP binding domain
A9D66_08420	SM00354	helix_turn _helix lactose operon repressor
A9D66_08440	SM01018	B12 binding domain
A9D66_08450	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A9D66_08470	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_08470	SM00357	Cold shock protein domain
A9D66_08470	SM00955	A9D66_08470
A9D66_08480	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A9D66_08485	SM00267	diguanylate cyclase
A9D66_08490	SM00479	A9D66_08490
A9D66_08505	SM00382	ATPases associated with a variety of cellular activities
A9D66_08540	SM00947	Carbonic anhydrase
A9D66_08550	SM00478	endonuclease III
A9D66_08550	SM00525	A9D66_08550
A9D66_08575	SM00450	Rhodanese Homology Domain
A9D66_08585	SM00644	A9D66_08585
A9D66_08605	SM00382	ATPases associated with a variety of cellular activities
A9D66_08640	SM00479	A9D66_08640
A9D66_08670	SM00947	Carbonic anhydrase
A9D66_08715	SM00421	helix_turn_helix, Lux Regulon
A9D66_08715	SM00448	cheY-homologous receiver domain
A9D66_08780	SM00968	SMC proteins Flexible Hinge Domain
A9D66_08785	SM00771	ZipA, C-terminal domain (FtsZ-binding)
A9D66_08800	SM00292	breast cancer carboxy-terminal domain
A9D66_08800	SM00532	Ligase N family
A9D66_08820	SM00434	DNA Topoisomerase IV
A9D66_08825	SM00564	beta-propeller repeat
A9D66_08865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_08865	SM00866	A9D66_08865
A9D66_08890	SM00240	Forkhead associated domain
A9D66_08910	SM00830	Chorismate mutase type II
A9D66_08955	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_08955	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_08965	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_08980	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_08980	SM00091	PAS domain
A9D66_08980	SM00387	Histidine kinase-like ATPases
A9D66_08980	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_08980	SM00448	cheY-homologous receiver domain
A9D66_08985	SM00448	cheY-homologous receiver domain
A9D66_08995	SM00382	ATPases associated with a variety of cellular activities
A9D66_09000	SM00091	PAS domain
A9D66_09000	SM00387	Histidine kinase-like ATPases
A9D66_09000	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_09000	SM00448	cheY-homologous receiver domain
A9D66_09155	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_09165	SM00382	ATPases associated with a variety of cellular activities
A9D66_09190	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_09190	SM01091	Transporter associated domain
A9D66_09215	SM00387	Histidine kinase-like ATPases
A9D66_09215	SM00433	TopoisomeraseII
A9D66_09240	SM01192	A9D66_09240
A9D66_09240	SM01193	A9D66_09240
A9D66_09265	SM00463	Small MutS-related domain
A9D66_09285	SM00257	Lysin motif
A9D66_09295	SM01103	A9D66_09295
A9D66_09305	SM00382	ATPases associated with a variety of cellular activities
A9D66_09345	SM00382	ATPases associated with a variety of cellular activities
A9D66_09355	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9D66_09370	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_09370	SM00091	PAS domain
A9D66_09370	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_09430	SM00670	Large family of predicted nucleotide-binding domains
A9D66_09450	SM01130	A9D66_09450
A9D66_09475	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A9D66_09520	SM00758	A9D66_09520
A9D66_09555	SM00646	A9D66_09555
A9D66_09625	SM00052	Putative diguanylate phosphodiesterase
A9D66_09625	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_09625	SM00267	diguanylate cyclase
A9D66_09635	SM00448	cheY-homologous receiver domain
A9D66_09640	SM00387	Histidine kinase-like ATPases
A9D66_09650	SM00014	Acid phosphatase homologues
A9D66_09740	SM00528	Domain in histone-like proteins of HNS family
A9D66_09765	SM00248	ankyrin repeats
A9D66_09780	SM00248	ankyrin repeats
A9D66_09790	SM00487	DEAD-like helicases superfamily
A9D66_09790	SM00490	helicase superfamily c-terminal domain
A9D66_09870	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_09895	SM00382	ATPases associated with a variety of cellular activities
A9D66_09950	SM00327	von Willebrand factor (vWF) type A domain
A9D66_09990	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_10045	SM00912	haemagglutination activity domain
A9D66_10060	SM00470	ParB-like nuclease domain
A9D66_10115	SM00100	Cyclic nucleotide-monophosphate binding domain
A9D66_10115	SM00419	helix_turn_helix, cAMP Regulatory protein
A9D66_10190	SM01007	Class II Aldolase and Adducin N-terminal domain
A9D66_10235	SM00841	Elongation factor P, C-terminal
A9D66_10235	SM01185	A9D66_10235
A9D66_10240	SM00822	A9D66_10240
A9D66_10260	SM00899	A9D66_10260
A9D66_10295	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A9D66_10305	SM00851	MGS-like domain
A9D66_10305	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A9D66_10330	SM00850	LytTr DNA-binding domain
A9D66_10335	SM00937	A9D66_10335
A9D66_10345	SM00448	cheY-homologous receiver domain
A9D66_10345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_10355	SM00073	Histidine Phosphotransfer domain
A9D66_10355	SM00387	Histidine kinase-like ATPases
A9D66_10355	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_10355	SM00448	cheY-homologous receiver domain
A9D66_10380	SM00966	SpoVT / AbrB like domain 
A9D66_10400	SM00052	Putative diguanylate phosphodiesterase
A9D66_10400	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_10400	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_10400	SM00091	PAS domain
A9D66_10400	SM00267	diguanylate cyclase
A9D66_10405	SM00448	cheY-homologous receiver domain
A9D66_10415	SM00138	Methyltransferase, chemotaxis proteins 
A9D66_10420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10430	SM00260	Two component signalling adaptor domain
A9D66_10440	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10455	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10455	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10470	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10475	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10480	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10485	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10495	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10495	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10500	SM01049	A9D66_10500
A9D66_10510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_10515	SM00073	Histidine Phosphotransfer domain
A9D66_10515	SM00260	Two component signalling adaptor domain
A9D66_10515	SM00387	Histidine kinase-like ATPases
A9D66_10515	SM01231	A9D66_10515
A9D66_10520	SM00448	cheY-homologous receiver domain
A9D66_10530	SM00260	Two component signalling adaptor domain
A9D66_10600	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_10620	SM00073	Histidine Phosphotransfer domain
A9D66_10620	SM00260	Two component signalling adaptor domain
A9D66_10620	SM00387	Histidine kinase-like ATPases
A9D66_10620	SM01231	A9D66_10620
A9D66_10630	SM00448	cheY-homologous receiver domain
A9D66_10645	SM00382	ATPases associated with a variety of cellular activities
A9D66_10645	SM00962	SRP54-type protein, GTPase domain
A9D66_10660	SM00052	Putative diguanylate phosphodiesterase
A9D66_10660	SM00267	diguanylate cyclase
A9D66_10665	SM00267	diguanylate cyclase
A9D66_10675	SM00267	diguanylate cyclase
A9D66_10725	SM00382	ATPases associated with a variety of cellular activities
A9D66_10780	SM00822	A9D66_10780
A9D66_10805	SM00382	ATPases associated with a variety of cellular activities
A9D66_10810	SM00448	cheY-homologous receiver domain
A9D66_10820	SM00421	helix_turn_helix, Lux Regulon
A9D66_10820	SM00448	cheY-homologous receiver domain
A9D66_10860	SM00047	Lysozyme subfamily 2
A9D66_10905	SM00260	Two component signalling adaptor domain
A9D66_10905	SM00448	cheY-homologous receiver domain
A9D66_10910	SM00858	A9D66_10910
A9D66_10925	SM00387	Histidine kinase-like ATPases
A9D66_10930	SM00052	Putative diguanylate phosphodiesterase
A9D66_10930	SM00267	diguanylate cyclase
A9D66_10930	SM00448	cheY-homologous receiver domain
A9D66_10935	SM00091	PAS domain
A9D66_10935	SM00387	Histidine kinase-like ATPases
A9D66_10940	SM00052	Putative diguanylate phosphodiesterase
A9D66_10940	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_10940	SM00091	PAS domain
A9D66_10940	SM00267	diguanylate cyclase
A9D66_10950	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_10975	SM00382	ATPases associated with a variety of cellular activities
A9D66_10975	SM01086	C-terminal, D2-small domain, of ClpB protein
A9D66_10980	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_11000	SM00382	ATPases associated with a variety of cellular activities
A9D66_11000	SM00843	A9D66_11000
A9D66_11020	SM00382	ATPases associated with a variety of cellular activities
A9D66_11045	SM00562	A9D66_11045
A9D66_11055	SM00028	Tetratricopeptide repeats
A9D66_11070	SM00564	beta-propeller repeat
A9D66_11075	SM00382	ATPases associated with a variety of cellular activities
A9D66_11080	SM00852	Probable molybdopterin binding domain
A9D66_11085	SM00450	Rhodanese Homology Domain
A9D66_11130	SM00852	Probable molybdopterin binding domain
A9D66_11180	SM00052	Putative diguanylate phosphodiesterase
A9D66_11185	SM00869	Autotransporter beta-domain
A9D66_11190	SM00421	helix_turn_helix, Lux Regulon
A9D66_11190	SM00448	cheY-homologous receiver domain
A9D66_11195	SM00387	Histidine kinase-like ATPases
A9D66_11195	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_11215	SM00869	Autotransporter beta-domain
A9D66_11235	SM00448	cheY-homologous receiver domain
A9D66_11235	SM00850	LytTr DNA-binding domain
A9D66_11275	SM00382	ATPases associated with a variety of cellular activities
A9D66_11285	SM00923	MbtH-like protein
A9D66_11290	SM00824	Thioesterase
A9D66_11360	SM01034	Sensors of blue-light using FAD
A9D66_11405	SM00363	S4 RNA-binding domain
A9D66_11410	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_11415	SM00421	helix_turn_helix, Lux Regulon
A9D66_11415	SM00448	cheY-homologous receiver domain
A9D66_11420	SM00450	Rhodanese Homology Domain
A9D66_11440	SM00984	UDP binding domain
A9D66_11455	SM00823	Phosphopantetheine attachment site
A9D66_11455	SM00824	Thioesterase
A9D66_11470	SM00974	A9D66_11470
A9D66_11485	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_11545	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A9D66_11545	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A9D66_11545	SM00493	A9D66_11545
A9D66_11630	SM00487	DEAD-like helicases superfamily
A9D66_11755	SM00953	A9D66_11755
A9D66_11820	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_11850	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9D66_11850	SM00465	GIY-YIG type nucleases (URI domain)
A9D66_11860	SM00226	Low molecular weight phosphatase family
A9D66_11875	SM00382	ATPases associated with a variety of cellular activities
A9D66_11890	SM00849	Metallo-beta-lactamase superfamily
A9D66_11900	SM00382	ATPases associated with a variety of cellular activities
A9D66_11950	SM00382	ATPases associated with a variety of cellular activities
A9D66_12380	SM00448	cheY-homologous receiver domain
A9D66_12385	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_12385	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_12385	SM00091	PAS domain
A9D66_12385	SM00387	Histidine kinase-like ATPases
A9D66_12385	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_12385	SM00448	cheY-homologous receiver domain
A9D66_12390	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_12390	SM00732	Likely ribonuclease with RNase H fold.
A9D66_12460	SM00479	A9D66_12460
A9D66_12470	SM00529	Helix-turn-helix diphteria tox regulatory element
A9D66_12515	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_12520	SM00387	Histidine kinase-like ATPases
A9D66_12525	SM00421	helix_turn_helix, Lux Regulon
A9D66_12525	SM00448	cheY-homologous receiver domain
A9D66_12530	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_12580	SM00857	Resolvase, N terminal domain
A9D66_12665	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_12665	SM01240	A9D66_12665
A9D66_12690	SM00822	A9D66_12690
A9D66_12700	SM00028	Tetratricopeptide repeats
A9D66_12710	SM00411	bacterial (prokaryotic) histone like domain
A9D66_12715	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_12790	SM00354	helix_turn _helix lactose operon repressor
A9D66_12815	SM00363	S4 RNA-binding domain
A9D66_12840	SM00382	ATPases associated with a variety of cellular activities
A9D66_12880	SM00028	Tetratricopeptide repeats
A9D66_12890	SM00357	Cold shock protein domain
A9D66_12895	SM00382	ATPases associated with a variety of cellular activities
A9D66_12900	SM00382	ATPases associated with a variety of cellular activities
A9D66_12930	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
A9D66_12945	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A9D66_12960	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A9D66_13000	SM00840	A9D66_13000
A9D66_13020	SM01234	A9D66_13020
A9D66_13060	SM00849	Metallo-beta-lactamase superfamily
A9D66_13115	SM00841	Elongation factor P, C-terminal
A9D66_13115	SM01185	A9D66_13115
A9D66_13125	SM00052	Putative diguanylate phosphodiesterase
A9D66_13125	SM00267	diguanylate cyclase
A9D66_13125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_13160	SM00382	ATPases associated with a variety of cellular activities
A9D66_13165	SM00487	DEAD-like helicases superfamily
A9D66_13165	SM00490	helicase superfamily c-terminal domain
A9D66_13190	SM00357	Cold shock protein domain
A9D66_13195	SM01322	A9D66_13195
A9D66_13205	SM00052	Putative diguanylate phosphodiesterase
A9D66_13205	SM00267	diguanylate cyclase
A9D66_13220	SM00822	A9D66_13220
A9D66_13245	SM00853	MutL C terminal dimerisation domain
A9D66_13245	SM01340	A9D66_13245
A9D66_13250	SM00646	A9D66_13250
A9D66_13290	SM00474	3'-5' exonuclease
A9D66_13305	SM00528	Domain in histone-like proteins of HNS family
A9D66_13320	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_13320	SM00267	diguanylate cyclase
A9D66_13325	SM00260	Two component signalling adaptor domain
A9D66_13330	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_13330	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_13340	SM00487	DEAD-like helicases superfamily
A9D66_13340	SM00490	helicase superfamily c-terminal domain
A9D66_13400	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_13425	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_13425	SM01091	Transporter associated domain
A9D66_13490	SM01230	A9D66_13490
A9D66_13500	SM01230	A9D66_13500
A9D66_13510	SM00267	diguanylate cyclase
A9D66_13510	SM00448	cheY-homologous receiver domain
A9D66_13560	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_13560	SM00091	PAS domain
A9D66_13560	SM00387	Histidine kinase-like ATPases
A9D66_13560	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_13560	SM00448	cheY-homologous receiver domain
A9D66_13560	SM01079	A9D66_13560
A9D66_13565	SM00448	cheY-homologous receiver domain
A9D66_13565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_13595	SM00354	helix_turn _helix lactose operon repressor
A9D66_13645	SM01323	A9D66_13645
A9D66_13660	SM00344	helix_turn_helix ASNC type
A9D66_13740	SM00387	Histidine kinase-like ATPases
A9D66_13805	SM00944	Pro-kumamolisin, activation domain
A9D66_13855	SM01130	A9D66_13855
A9D66_13880	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_13885	SM00382	ATPases associated with a variety of cellular activities
A9D66_13885	SM00962	SRP54-type protein, GTPase domain
A9D66_13885	SM00963	SRP54-type protein, helical bundle domain
A9D66_13890	SM00478	endonuclease III
A9D66_13900	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_13900	SM00091	PAS domain
A9D66_13900	SM00387	Histidine kinase-like ATPases
A9D66_13900	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_13900	SM00448	cheY-homologous receiver domain
A9D66_13915	SM00465	GIY-YIG type nucleases (URI domain)
A9D66_13950	SM00507	HNH nucleases
A9D66_13955	SM00861	Transketolase, pyrimidine binding domain
A9D66_13980	SM00849	Metallo-beta-lactamase superfamily
A9D66_14065	SM00422	helix_turn_helix, mercury resistance
A9D66_14070	SM00411	bacterial (prokaryotic) histone like domain
A9D66_14075	SM00873	B3/4 domain
A9D66_14075	SM00874	tRNA synthetase B5 domain
A9D66_14075	SM00896	Ferredoxin-fold anticodon binding domain
A9D66_14100	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9D66_14105	SM00354	helix_turn _helix lactose operon repressor
A9D66_14110	SM00642	Alpha-amylase domain
A9D66_14140	SM00642	Alpha-amylase domain
A9D66_14225	SM00382	ATPases associated with a variety of cellular activities
A9D66_14285	SM00487	DEAD-like helicases superfamily
A9D66_14285	SM00490	helicase superfamily c-terminal domain
A9D66_14365	SM01001	AIR carboxylase
A9D66_14385	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_14385	SM00322	K homology RNA-binding domain
A9D66_14390	SM01387	A9D66_14390
A9D66_14410	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_14410	SM00322	K homology RNA-binding domain
A9D66_14460	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A9D66_14465	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A9D66_14510	SM00822	A9D66_14510
A9D66_14525	SM00052	Putative diguanylate phosphodiesterase
A9D66_14525	SM00267	diguanylate cyclase
A9D66_14525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_14605	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A9D66_14635	SM00257	Lysin motif
A9D66_14665	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_14670	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_14675	SM00966	SpoVT / AbrB like domain 
A9D66_14785	SM01160	A9D66_14785
A9D66_14840	SM00098	Alkaline phosphatase homologues
A9D66_14845	SM00977	TilS substrate C-terminal domain
A9D66_14860	SM01351	A9D66_14860
A9D66_14895	SM00316	Ribosomal protein S1-like RNA-binding domain
A9D66_15030	SM00382	ATPases associated with a variety of cellular activities
A9D66_15065	SM00448	cheY-homologous receiver domain
A9D66_15065	SM00862	Transcriptional regulatory protein, C terminal
A9D66_15070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_15070	SM00387	Histidine kinase-like ATPases
A9D66_15070	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_15110	SM00363	S4 RNA-binding domain
A9D66_15115	SM00052	Putative diguanylate phosphodiesterase
A9D66_15115	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_15115	SM00091	PAS domain
A9D66_15115	SM00267	diguanylate cyclase
A9D66_15120	SM00487	DEAD-like helicases superfamily
A9D66_15120	SM00490	helicase superfamily c-terminal domain
A9D66_15165	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_15165	SM00478	endonuclease III
A9D66_15165	SM01009	AlkA N-terminal domain
A9D66_15185	SM00829	Enoylreductase
A9D66_15255	SM01126	A9D66_15255
A9D66_15310	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_15390	SM00645	Papain family cysteine protease
A9D66_15395	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_15395	SM00387	Histidine kinase-like ATPases
A9D66_15395	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_15400	SM00448	cheY-homologous receiver domain
A9D66_15400	SM00862	Transcriptional regulatory protein, C terminal
A9D66_15415	SM00487	DEAD-like helicases superfamily
A9D66_15415	SM00490	helicase superfamily c-terminal domain
A9D66_15415	SM00982	A9D66_15415
A9D66_15415	SM01058	CarD-like/TRCF domain
A9D66_15425	SM00073	Histidine Phosphotransfer domain
A9D66_15425	SM00260	Two component signalling adaptor domain
A9D66_15425	SM00387	Histidine kinase-like ATPases
A9D66_15425	SM01231	A9D66_15425
A9D66_15430	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_15430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_15435	SM00260	Two component signalling adaptor domain
A9D66_15440	SM00052	Putative diguanylate phosphodiesterase
A9D66_15440	SM00448	cheY-homologous receiver domain
A9D66_15445	SM00138	Methyltransferase, chemotaxis proteins 
A9D66_15450	SM00448	cheY-homologous receiver domain
A9D66_15455	SM00155	Phospholipase D. Active site motifs.
A9D66_15470	SM00855	Phosphoglycerate mutase family
A9D66_15520	SM00248	ankyrin repeats
A9D66_15560	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A9D66_15565	SM01092	CO dehydrogenase flavoprotein C-terminal domain
A9D66_15575	SM00829	Enoylreductase
A9D66_15580	SM00267	diguanylate cyclase
A9D66_15645	SM00732	Likely ribonuclease with RNase H fold.
A9D66_15680	SM00382	ATPases associated with a variety of cellular activities
A9D66_15695	SM00411	bacterial (prokaryotic) histone like domain
A9D66_15725	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
A9D66_15740	SM00382	ATPases associated with a variety of cellular activities
A9D66_15770	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A9D66_15775	SM00671	Sel1-like repeats.
A9D66_15805	SM00054	EF-hand, calcium binding motif
A9D66_15895	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_15915	SM00382	ATPases associated with a variety of cellular activities
A9D66_15960	SM00924	MgtE intracellular N domain
A9D66_15995	SM00656	A9D66_15995
A9D66_16010	SM00421	helix_turn_helix, Lux Regulon
A9D66_16040	SM00849	Metallo-beta-lactamase superfamily
A9D66_16050	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A9D66_16090	SM00422	helix_turn_helix, mercury resistance
A9D66_16170	SM00387	Histidine kinase-like ATPases
A9D66_16170	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_16170	SM00448	cheY-homologous receiver domain
A9D66_16175	SM00387	Histidine kinase-like ATPases
A9D66_16175	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_16175	SM00448	cheY-homologous receiver domain
A9D66_16180	SM00448	cheY-homologous receiver domain
A9D66_16190	SM00387	Histidine kinase-like ATPases
A9D66_16190	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_16190	SM00448	cheY-homologous receiver domain
A9D66_16195	SM00867	YceI-like domain 
A9D66_16205	SM00867	YceI-like domain 
A9D66_16260	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_16385	SM00812	Alpha-L-fucosidase
A9D66_16390	SM00636	A9D66_16390
A9D66_16405	SM00758	A9D66_16405
A9D66_16405	SM01217	A9D66_16405
A9D66_16435	SM01149	A9D66_16435
A9D66_16470	SM00369	Leucine-rich repeats, typical (most populated) subfamily
A9D66_16495	SM00260	Two component signalling adaptor domain
A9D66_16505	SM00073	Histidine Phosphotransfer domain
A9D66_16505	SM00260	Two component signalling adaptor domain
A9D66_16505	SM00387	Histidine kinase-like ATPases
A9D66_16505	SM00448	cheY-homologous receiver domain
A9D66_16505	SM01231	A9D66_16505
A9D66_16510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_16515	SM00260	Two component signalling adaptor domain
A9D66_16520	SM00448	cheY-homologous receiver domain
A9D66_16525	SM00448	cheY-homologous receiver domain
A9D66_16550	SM00491	A9D66_16550
A9D66_16575	SM00954	Region found in RelA / SpoT proteins
A9D66_16625	SM00382	ATPases associated with a variety of cellular activities
A9D66_16625	SM00487	DEAD-like helicases superfamily
A9D66_16625	SM00490	helicase superfamily c-terminal domain
A9D66_16625	SM00847	Helicase associated domain (HA2)  Add an annotation
A9D66_16635	SM00341	Helicase and RNase D C-terminal
A9D66_16635	SM00487	DEAD-like helicases superfamily
A9D66_16635	SM00490	helicase superfamily c-terminal domain
A9D66_16635	SM00956	A9D66_16635
A9D66_16645	SM00448	cheY-homologous receiver domain
A9D66_16665	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_16665	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_16680	SM00448	cheY-homologous receiver domain
A9D66_16685	SM00091	PAS domain
A9D66_16685	SM00911	HWE histidine kinase
A9D66_16765	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_16965	SM00382	ATPases associated with a variety of cellular activities
A9D66_16980	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9D66_17100	SM01126	A9D66_17100
A9D66_17115	SM00834	Putative regulatory protein
A9D66_17160	SM00382	ATPases associated with a variety of cellular activities
A9D66_17250	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_17250	SM00871	Bacterial transcription activator, effector binding domain
A9D66_17260	SM00855	Phosphoglycerate mutase family
A9D66_17315	SM00382	ATPases associated with a variety of cellular activities
A9D66_17315	SM01086	C-terminal, D2-small domain, of ClpB protein
A9D66_17320	SM00382	ATPases associated with a variety of cellular activities
A9D66_17330	SM00062	Bacterial periplasmic substrate-binding proteins
A9D66_17405	SM00564	beta-propeller repeat
A9D66_17410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_17455	SM00881	CoA binding domain
A9D66_17465	SM00387	Histidine kinase-like ATPases
A9D66_17465	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_17470	SM00382	ATPases associated with a variety of cellular activities
A9D66_17470	SM00448	cheY-homologous receiver domain
A9D66_17510	SM00387	Histidine kinase-like ATPases
A9D66_17510	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_17515	SM00448	cheY-homologous receiver domain
A9D66_17515	SM00862	Transcriptional regulatory protein, C terminal
A9D66_17530	SM00642	Alpha-amylase domain
A9D66_17535	SM00528	Domain in histone-like proteins of HNS family
A9D66_17545	SM00318	Staphylococcal nuclease homologues
A9D66_17615	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_17675	SM00869	Autotransporter beta-domain
A9D66_17725	SM00354	helix_turn _helix lactose operon repressor
A9D66_17750	SM00421	helix_turn_helix, Lux Regulon
A9D66_17750	SM00448	cheY-homologous receiver domain
A9D66_17755	SM00387	Histidine kinase-like ATPases
A9D66_17755	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_17755	SM00448	cheY-homologous receiver domain
A9D66_17760	SM00052	Putative diguanylate phosphodiesterase
A9D66_17785	SM00060	Fibronectin type 3 domain
A9D66_17815	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A9D66_17880	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_17880	SM00387	Histidine kinase-like ATPases
A9D66_17910	SM00506	Appr-1"-p processing enzyme
A9D66_17950	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A9D66_17975	SM00849	Metallo-beta-lactamase superfamily
A9D66_17990	SM00382	ATPases associated with a variety of cellular activities
A9D66_18055	SM00861	Transketolase, pyrimidine binding domain
A9D66_18070	SM00028	Tetratricopeptide repeats
A9D66_18070	SM00327	von Willebrand factor (vWF) type A domain
A9D66_18075	SM00327	von Willebrand factor (vWF) type A domain
A9D66_18095	SM00965	Secretin and TonB N terminus short domain
A9D66_18145	SM00487	DEAD-like helicases superfamily
A9D66_18145	SM00490	helicase superfamily c-terminal domain
A9D66_18155	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9D66_18155	SM00954	Region found in RelA / SpoT proteins
A9D66_18160	SM01409	A9D66_18160
A9D66_18165	SM00072	Guanylate kinase homologues.
A9D66_18190	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_18215	SM01011	Aminopeptidase P, N-terminal domain
A9D66_18285	SM00028	Tetratricopeptide repeats
A9D66_18285	SM00382	ATPases associated with a variety of cellular activities
A9D66_18285	SM00421	helix_turn_helix, Lux Regulon
A9D66_18360	SM00464	Found in ATP-dependent protease La (LON)
A9D66_18410	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_18430	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_18460	SM00917	LeuA allosteric (dimerisation) domain
A9D66_18465	SM01329	A9D66_18465
A9D66_18485	SM00267	diguanylate cyclase
A9D66_18535	SM00919	Malic enzyme, NAD binding domain
A9D66_18535	SM01274	A9D66_18535
A9D66_18550	SM00387	Histidine kinase-like ATPases
A9D66_18550	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_18550	SM00448	cheY-homologous receiver domain
A9D66_18585	SM00421	helix_turn_helix, Lux Regulon
A9D66_18585	SM00448	cheY-homologous receiver domain
A9D66_18595	SM00387	Histidine kinase-like ATPases
A9D66_18595	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_18600	SM00448	cheY-homologous receiver domain
A9D66_18600	SM00862	Transcriptional regulatory protein, C terminal
A9D66_18615	SM00822	A9D66_18615
A9D66_18620	SM00354	helix_turn _helix lactose operon repressor
A9D66_18635	SM00642	Alpha-amylase domain
A9D66_18645	SM01154	A9D66_18645
A9D66_18680	SM00450	Rhodanese Homology Domain
A9D66_18745	SM00028	Tetratricopeptide repeats
A9D66_18825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A9D66_18825	SM00866	A9D66_18825
A9D66_18885	SM00382	ATPases associated with a variety of cellular activities
A9D66_18915	SM01211	A9D66_18915
A9D66_19010	SM00528	Domain in histone-like proteins of HNS family
A9D66_19025	SM00382	ATPases associated with a variety of cellular activities
A9D66_19050	SM00882	Coenzyme A transferase
A9D66_19055	SM00882	Coenzyme A transferase
A9D66_19070	SM00984	UDP binding domain
A9D66_19095	SM00893	Electron transfer flavoprotein domain
A9D66_19100	SM00893	Electron transfer flavoprotein domain
A9D66_19155	SM00382	ATPases associated with a variety of cellular activities
A9D66_19180	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_19215	SM00487	DEAD-like helicases superfamily
A9D66_19215	SM00490	helicase superfamily c-terminal domain
A9D66_19250	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_19285	SM00825	Beta-ketoacyl synthase
A9D66_19360	SM00382	ATPases associated with a variety of cellular activities
A9D66_19380	SM00382	ATPases associated with a variety of cellular activities
A9D66_19380	SM00448	cheY-homologous receiver domain
A9D66_19385	SM00387	Histidine kinase-like ATPases
A9D66_19400	SM00830	Chorismate mutase type II
A9D66_19410	SM00382	ATPases associated with a variety of cellular activities
A9D66_19480	SM00986	Uracil DNA glycosylase superfamily
A9D66_19480	SM00987	UreE urease accessory protein, C-terminal domain 
A9D66_19520	SM00382	ATPases associated with a variety of cellular activities
A9D66_19520	SM00930	A9D66_19520
A9D66_19540	SM00387	Histidine kinase-like ATPases
A9D66_19540	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_19540	SM00448	cheY-homologous receiver domain
A9D66_19595	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_19595	SM00091	PAS domain
A9D66_19595	SM00387	Histidine kinase-like ATPases
A9D66_19595	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_19595	SM00448	cheY-homologous receiver domain
A9D66_19615	SM01005	Alanine racemase, C-terminal domain
A9D66_19625	SM00344	helix_turn_helix ASNC type
A9D66_19680	SM00382	ATPases associated with a variety of cellular activities
A9D66_19690	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
A9D66_19695	SM00986	Uracil DNA glycosylase superfamily
A9D66_19695	SM00987	UreE urease accessory protein, C-terminal domain 
A9D66_19700	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9D66_19765	SM00448	cheY-homologous receiver domain
A9D66_19765	SM00850	LytTr DNA-binding domain
A9D66_19770	SM00387	Histidine kinase-like ATPases
A9D66_19810	SM00091	PAS domain
A9D66_19810	SM00138	Methyltransferase, chemotaxis proteins 
A9D66_19810	SM00911	HWE histidine kinase
A9D66_19815	SM00448	cheY-homologous receiver domain
A9D66_19825	SM00382	ATPases associated with a variety of cellular activities
A9D66_19825	SM00448	cheY-homologous receiver domain
A9D66_19880	SM00382	ATPases associated with a variety of cellular activities
A9D66_19955	SM00382	ATPases associated with a variety of cellular activities
A9D66_19960	SM00631	A9D66_19960
A9D66_19985	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A9D66_19985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_19990	SM00477	DNA/RNA non-specific endonuclease
A9D66_19990	SM00892	DNA/RNA non-specific endonuclease
A9D66_20090	SM00493	A9D66_20090
A9D66_20285	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_20455	SM00257	Lysin motif
A9D66_20480	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A9D66_20480	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A9D66_20480	SM00493	A9D66_20480
A9D66_20535	SM00487	DEAD-like helicases superfamily
A9D66_20535	SM00490	helicase superfamily c-terminal domain
A9D66_20570	SM00986	Uracil DNA glycosylase superfamily
A9D66_20570	SM00987	UreE urease accessory protein, C-terminal domain 
A9D66_20575	SM00448	cheY-homologous receiver domain
A9D66_20585	SM00382	ATPases associated with a variety of cellular activities
A9D66_20590	SM00487	DEAD-like helicases superfamily
A9D66_20590	SM00490	helicase superfamily c-terminal domain
A9D66_20600	SM00357	Cold shock protein domain
A9D66_20600	SM00382	ATPases associated with a variety of cellular activities
A9D66_20600	SM00959	Rho termination factor, N-terminal domain
A9D66_20630	SM00257	Lysin motif
A9D66_20660	SM01150	A9D66_20660
A9D66_20710	SM00644	A9D66_20710
A9D66_20720	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A9D66_20755	SM01217	A9D66_20755
A9D66_20760	SM00905	Dihydroneopterin aldolase
A9D66_20785	SM00400	zinc finger
A9D66_20785	SM00493	A9D66_20785
A9D66_20785	SM00766	DNA primase DnaG DnaB-binding
A9D66_20885	SM00363	S4 RNA-binding domain
A9D66_20930	SM00470	ParB-like nuclease domain
A9D66_20950	SM01259	A9D66_20950
A9D66_20980	SM00836	DALR anticodon binding domain
A9D66_20980	SM01016	Arginyl tRNA synthetase N terminal dom
A9D66_21010	SM00823	Phosphopantetheine attachment site
A9D66_21010	SM00824	Thioesterase
A9D66_21050	SM00938	Nitrogen regulatory protein P-II
A9D66_21060	SM00382	ATPases associated with a variety of cellular activities
A9D66_21075	SM00052	Putative diguanylate phosphodiesterase
A9D66_21105	SM00244	prohibitin homologues
A9D66_21155	SM00448	cheY-homologous receiver domain
A9D66_21155	SM00862	Transcriptional regulatory protein, C terminal
A9D66_21160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9D66_21160	SM00387	Histidine kinase-like ATPases
A9D66_21160	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_21185	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9D66_21230	SM01060	A9D66_21230
A9D66_21245	SM00421	helix_turn_helix, Lux Regulon
A9D66_21245	SM00448	cheY-homologous receiver domain
A9D66_21260	SM00382	ATPases associated with a variety of cellular activities
A9D66_21300	SM00849	Metallo-beta-lactamase superfamily
A9D66_21330	SM00960	Roadblock/LC7 domain
A9D66_21415	SM00387	Histidine kinase-like ATPases
A9D66_21415	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_21420	SM00448	cheY-homologous receiver domain
A9D66_21420	SM00862	Transcriptional regulatory protein, C terminal
A9D66_21440	SM00248	ankyrin repeats
A9D66_21445	SM01060	A9D66_21445
A9D66_21450	SM00491	A9D66_21450
A9D66_21480	SM00477	DNA/RNA non-specific endonuclease
A9D66_21480	SM00892	DNA/RNA non-specific endonuclease
A9D66_21500	SM01004	Delta-aminolevulinic acid dehydratase
A9D66_21550	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A9D66_21575	SM00382	ATPases associated with a variety of cellular activities
A9D66_21585	SM00530	Helix-turn-helix XRE-family like proteins 
A9D66_21625	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_21635	SM00382	ATPases associated with a variety of cellular activities
A9D66_21700	SM00881	CoA binding domain
A9D66_21705	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9D66_21705	SM00924	MgtE intracellular N domain
A9D66_21735	SM00248	ankyrin repeats
A9D66_21745	SM00825	Beta-ketoacyl synthase
A9D66_21765	SM00822	A9D66_21765
A9D66_21805	SM00563	Phosphate acyltransferases
A9D66_21860	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A9D66_21860	SM00474	3'-5' exonuclease
A9D66_21860	SM00475	5'-3' exonuclease
A9D66_21860	SM00482	DNA polymerase A domain
A9D66_21875	SM00912	haemagglutination activity domain
A9D66_21895	SM00331	Sigma factor PP2C-like phosphatases
A9D66_21895	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
A9D66_21920	SM00240	Forkhead associated domain
A9D66_21935	SM00028	Tetratricopeptide repeats
A9D66_21945	SM00220	Serine/Threonine protein kinases, catalytic domain
A9D66_21965	SM00965	Secretin and TonB N terminus short domain
A9D66_22015	SM00915	Jacalin-like lectin domain
A9D66_22035	SM00382	ATPases associated with a variety of cellular activities
A9D66_22035	SM01086	C-terminal, D2-small domain, of ClpB protein
A9D66_22075	SM00342	helix_turn_helix, arabinose operon control protein
A9D66_22085	SM01266	A9D66_22085
A9D66_22105	SM00155	Phospholipase D. Active site motifs.
A9D66_22250	SM00421	helix_turn_helix, Lux Regulon
A9D66_22250	SM00448	cheY-homologous receiver domain
A9D66_22305	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A9D66_22320	SM00346	helix_turn_helix isocitrate lyase regulation
A9D66_22330	SM00091	PAS domain
A9D66_22330	SM00387	Histidine kinase-like ATPases
A9D66_22330	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_22330	SM00448	cheY-homologous receiver domain
A9D66_22360	SM00564	beta-propeller repeat
A9D66_22405	SM00382	ATPases associated with a variety of cellular activities
A9D66_22410	SM00836	DALR anticodon binding domain
A9D66_22420	SM00382	ATPases associated with a variety of cellular activities
A9D66_22495	SM00354	helix_turn _helix lactose operon repressor
A9D66_22510	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A9D66_22520	SM00758	A9D66_22520
A9D66_22520	SM01217	A9D66_22520
A9D66_22540	SM00612	A9D66_22540
A9D66_22570	SM01007	Class II Aldolase and Adducin N-terminal domain
A9D66_22605	SM00633	Glycosyl hydrolase family 10
A9D66_22620	SM00633	Glycosyl hydrolase family 10
A9D66_22630	SM00633	Glycosyl hydrolase family 10
A9D66_22680	SM00829	Enoylreductase
A9D66_22685	SM00563	Phosphate acyltransferases
A9D66_22695	SM00354	helix_turn _helix lactose operon repressor
A9D66_22720	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A9D66_22755	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_22755	SM00388	His Kinase A (phosphoacceptor) domain
A9D66_22770	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A9D66_22770	SM01232	A9D66_22770
A9D66_22805	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_22805	SM00091	PAS domain
A9D66_22860	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9D66_22890	SM00155	Phospholipase D. Active site motifs.
A9D66_22950	SM00796	Allophanate hydrolase subunit 1
A9D66_22950	SM00797	Allophanate hydrolase subunit 2
A9D66_22950	SM00878	Biotin carboxylase C-terminal domain
A9D66_23005	SM00382	ATPases associated with a variety of cellular activities
A9D66_23055	SM00829	Enoylreductase
A9D66_23095	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9D66_23095	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9D66_23095	SM00091	PAS domain
A9D66_23095	SM00267	diguanylate cyclase
A9D66_23125	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A9D66_23150	SM00014	Acid phosphatase homologues
A9D66_23160	SM00028	Tetratricopeptide repeats
A9D66_23195	SM00670	Large family of predicted nucleotide-binding domains
A9D66_23205	SM00857	Resolvase, N terminal domain
A9D66_23230	SM00857	Resolvase, N terminal domain
A9D66_23240	SM00966	SpoVT / AbrB like domain 
