CIW71_00005 SM00382 ATPases associated with a variety of cellular activities CIW71_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CIW71_00010 SM00480 DNA polymerase III beta subunit CIW71_00020 SM00387 Histidine kinase-like ATPases CIW71_00020 SM00433 TopoisomeraseII CIW71_00035 SM00028 Tetratricopeptide repeats CIW71_00070 SM00155 Phospholipase D. Active site motifs. CIW71_00140 SM00382 ATPases associated with a variety of cellular activities CIW71_00165 SM00953 CIW71_00165 CIW71_00195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW71_00195 SM00245 tail specific protease CIW71_00250 SM00829 Enoylreductase CIW71_00380 SM00382 ATPases associated with a variety of cellular activities CIW71_00505 SM00487 DEAD-like helicases superfamily CIW71_00505 SM00490 helicase superfamily c-terminal domain CIW71_00530 SM00822 CIW71_00530 CIW71_00535 SM00822 CIW71_00535 CIW71_00595 SM00862 Transcriptional regulatory protein, C terminal CIW71_00615 SM00421 helix_turn_helix, Lux Regulon CIW71_00615 SM00448 cheY-homologous receiver domain CIW71_00640 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CIW71_00830 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_00835 SM00642 Alpha-amylase domain CIW71_00840 SM00642 Alpha-amylase domain CIW71_00845 SM00642 Alpha-amylase domain CIW71_01080 SM00564 beta-propeller repeat CIW71_01115 SM00091 PAS domain CIW71_01115 SM00387 Histidine kinase-like ATPases CIW71_01115 SM00388 His Kinase A (phosphoacceptor) domain CIW71_01115 SM00448 cheY-homologous receiver domain CIW71_01130 SM00346 helix_turn_helix isocitrate lyase regulation CIW71_01145 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW71_01205 SM00421 helix_turn_helix, Lux Regulon CIW71_01205 SM00448 cheY-homologous receiver domain CIW71_01350 SM00155 Phospholipase D. Active site motifs. CIW71_01375 SM01266 CIW71_01375 CIW71_01385 SM00342 helix_turn_helix, arabinose operon control protein CIW71_01425 SM00382 ATPases associated with a variety of cellular activities CIW71_01425 SM01086 C-terminal, D2-small domain, of ClpB protein CIW71_01460 SM00915 Jacalin-like lectin domain CIW71_01495 SM00220 Serine/Threonine protein kinases, catalytic domain CIW71_01505 SM00028 Tetratricopeptide repeats CIW71_01520 SM00240 Forkhead associated domain CIW71_01545 SM00331 Sigma factor PP2C-like phosphatases CIW71_01545 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CIW71_01565 SM00912 haemagglutination activity domain CIW71_01580 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CIW71_01580 SM00474 3'-5' exonuclease CIW71_01580 SM00475 5'-3' exonuclease CIW71_01580 SM00482 DNA polymerase A domain CIW71_01650 SM00563 Phosphate acyltransferases CIW71_01695 SM00822 CIW71_01695 CIW71_01725 SM00825 Beta-ketoacyl synthase CIW71_01735 SM00248 ankyrin repeats CIW71_01760 SM01057 Eukaryotic-type carbonic anhydrase CIW71_01770 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_01770 SM00924 MgtE intracellular N domain CIW71_01775 SM00881 CoA binding domain CIW71_01855 SM00382 ATPases associated with a variety of cellular activities CIW71_01865 SM00342 helix_turn_helix, arabinose operon control protein CIW71_01905 SM00530 Helix-turn-helix XRE-family like proteins CIW71_01915 SM00382 ATPases associated with a variety of cellular activities CIW71_01935 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CIW71_01995 SM01004 Delta-aminolevulinic acid dehydratase CIW71_02015 SM00477 DNA/RNA non-specific endonuclease CIW71_02015 SM00892 DNA/RNA non-specific endonuclease CIW71_02045 SM00491 CIW71_02045 CIW71_02055 SM01060 CIW71_02055 CIW71_02060 SM00248 ankyrin repeats CIW71_02085 SM00448 cheY-homologous receiver domain CIW71_02085 SM00862 Transcriptional regulatory protein, C terminal CIW71_02090 SM00387 Histidine kinase-like ATPases CIW71_02090 SM00388 His Kinase A (phosphoacceptor) domain CIW71_02180 SM00960 Roadblock/LC7 domain CIW71_02210 SM00849 Metallo-beta-lactamase superfamily CIW71_02255 SM00382 ATPases associated with a variety of cellular activities CIW71_02270 SM00421 helix_turn_helix, Lux Regulon CIW71_02270 SM00448 cheY-homologous receiver domain CIW71_02285 SM01060 CIW71_02285 CIW71_02330 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW71_02360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_02360 SM00387 Histidine kinase-like ATPases CIW71_02360 SM00388 His Kinase A (phosphoacceptor) domain CIW71_02365 SM00448 cheY-homologous receiver domain CIW71_02365 SM00862 Transcriptional regulatory protein, C terminal CIW71_02410 SM00244 prohibitin homologues CIW71_02445 SM00052 Putative diguanylate phosphodiesterase CIW71_02460 SM00382 ATPases associated with a variety of cellular activities CIW71_02470 SM00938 Nitrogen regulatory protein P-II CIW71_02510 SM00823 Phosphopantetheine attachment site CIW71_02510 SM00824 Thioesterase CIW71_02540 SM00836 DALR anticodon binding domain CIW71_02540 SM01016 Arginyl tRNA synthetase N terminal dom CIW71_02570 SM01259 CIW71_02570 CIW71_02595 SM00470 ParB-like nuclease domain CIW71_02640 SM00363 S4 RNA-binding domain CIW71_02745 SM00400 zinc finger CIW71_02745 SM00493 CIW71_02745 CIW71_02745 SM00766 DNA primase DnaG DnaB-binding CIW71_02775 SM00905 Dihydroneopterin aldolase CIW71_02780 SM01217 CIW71_02780 CIW71_02815 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW71_02825 SM00644 CIW71_02825 CIW71_02880 SM01150 CIW71_02880 CIW71_02910 SM00257 Lysin motif CIW71_02945 SM00357 Cold shock protein domain CIW71_02945 SM00382 ATPases associated with a variety of cellular activities CIW71_02945 SM00959 Rho termination factor, N-terminal domain CIW71_02955 SM00487 DEAD-like helicases superfamily CIW71_02955 SM00490 helicase superfamily c-terminal domain CIW71_02960 SM00382 ATPases associated with a variety of cellular activities CIW71_02970 SM00448 cheY-homologous receiver domain CIW71_02975 SM00986 Uracil DNA glycosylase superfamily CIW71_02975 SM00987 UreE urease accessory protein, C-terminal domain CIW71_03010 SM00487 DEAD-like helicases superfamily CIW71_03010 SM00490 helicase superfamily c-terminal domain CIW71_03065 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CIW71_03065 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CIW71_03065 SM00493 CIW71_03065 CIW71_03090 SM00257 Lysin motif CIW71_03220 SM00487 DEAD-like helicases superfamily CIW71_03220 SM00490 helicase superfamily c-terminal domain CIW71_03320 SM00631 CIW71_03320 CIW71_03325 SM00382 ATPases associated with a variety of cellular activities CIW71_03400 SM00382 ATPases associated with a variety of cellular activities CIW71_03460 SM00382 ATPases associated with a variety of cellular activities CIW71_03460 SM00448 cheY-homologous receiver domain CIW71_03470 SM00448 cheY-homologous receiver domain CIW71_03530 SM00387 Histidine kinase-like ATPases CIW71_03535 SM00448 cheY-homologous receiver domain CIW71_03535 SM00850 LytTr DNA-binding domain CIW71_03605 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_03610 SM00986 Uracil DNA glycosylase superfamily CIW71_03610 SM00987 UreE urease accessory protein, C-terminal domain CIW71_03615 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CIW71_03630 SM00382 ATPases associated with a variety of cellular activities CIW71_03690 SM00344 helix_turn_helix ASNC type CIW71_03700 SM01005 Alanine racemase, C-terminal domain CIW71_03720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_03720 SM00091 PAS domain CIW71_03720 SM00387 Histidine kinase-like ATPases CIW71_03720 SM00388 His Kinase A (phosphoacceptor) domain CIW71_03720 SM00448 cheY-homologous receiver domain CIW71_03775 SM00387 Histidine kinase-like ATPases CIW71_03775 SM00388 His Kinase A (phosphoacceptor) domain CIW71_03775 SM00448 cheY-homologous receiver domain CIW71_03795 SM00382 ATPases associated with a variety of cellular activities CIW71_03795 SM00930 CIW71_03795 CIW71_03850 SM00986 Uracil DNA glycosylase superfamily CIW71_03850 SM00987 UreE urease accessory protein, C-terminal domain CIW71_03920 SM00382 ATPases associated with a variety of cellular activities CIW71_03930 SM00830 Chorismate mutase type II CIW71_03945 SM00387 Histidine kinase-like ATPases CIW71_03950 SM00382 ATPases associated with a variety of cellular activities CIW71_03950 SM00448 cheY-homologous receiver domain CIW71_03970 SM00382 ATPases associated with a variety of cellular activities CIW71_04045 SM00825 Beta-ketoacyl synthase CIW71_04080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_04115 SM00487 DEAD-like helicases superfamily CIW71_04115 SM00490 helicase superfamily c-terminal domain CIW71_04155 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_04180 SM00382 ATPases associated with a variety of cellular activities CIW71_04240 SM00893 Electron transfer flavoprotein domain CIW71_04245 SM00893 Electron transfer flavoprotein domain CIW71_04270 SM00984 UDP binding domain CIW71_04285 SM00882 Coenzyme A transferase CIW71_04290 SM00882 Coenzyme A transferase CIW71_04315 SM00382 ATPases associated with a variety of cellular activities CIW71_04330 SM00528 Domain in histone-like proteins of HNS family CIW71_04360 SM00656 CIW71_04360 CIW71_04445 SM01211 CIW71_04445 CIW71_04470 SM00382 ATPases associated with a variety of cellular activities CIW71_04540 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_04540 SM00866 CIW71_04540 CIW71_04625 SM00028 Tetratricopeptide repeats CIW71_04705 SM00450 Rhodanese Homology Domain CIW71_04740 SM00382 ATPases associated with a variety of cellular activities CIW71_04795 SM01154 CIW71_04795 CIW71_04805 SM00642 Alpha-amylase domain CIW71_04820 SM00354 helix_turn _helix lactose operon repressor CIW71_04825 SM00822 CIW71_04825 CIW71_04845 SM00448 cheY-homologous receiver domain CIW71_04845 SM00862 Transcriptional regulatory protein, C terminal CIW71_04850 SM00387 Histidine kinase-like ATPases CIW71_04850 SM00388 His Kinase A (phosphoacceptor) domain CIW71_04860 SM00421 helix_turn_helix, Lux Regulon CIW71_04860 SM00448 cheY-homologous receiver domain CIW71_04895 SM00387 Histidine kinase-like ATPases CIW71_04895 SM00388 His Kinase A (phosphoacceptor) domain CIW71_04895 SM00448 cheY-homologous receiver domain CIW71_04915 SM00919 Malic enzyme, NAD binding domain CIW71_04915 SM01274 CIW71_04915 CIW71_04970 SM00267 diguanylate cyclase CIW71_04990 SM01329 CIW71_04990 CIW71_04995 SM00917 LeuA allosteric (dimerisation) domain CIW71_05025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_05045 SM00862 Transcriptional regulatory protein, C terminal CIW71_05050 SM00342 helix_turn_helix, arabinose operon control protein CIW71_05105 SM00464 Found in ATP-dependent protease La (LON) CIW71_05180 SM00028 Tetratricopeptide repeats CIW71_05180 SM00382 ATPases associated with a variety of cellular activities CIW71_05180 SM00421 helix_turn_helix, Lux Regulon CIW71_05255 SM01011 Aminopeptidase P, N-terminal domain CIW71_05280 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_05305 SM00072 Guanylate kinase homologues. CIW71_05310 SM01409 CIW71_05310 CIW71_05315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_05315 SM00954 Region found in RelA / SpoT proteins CIW71_05325 SM00487 DEAD-like helicases superfamily CIW71_05325 SM00490 helicase superfamily c-terminal domain CIW71_05375 SM00965 Secretin and TonB N terminus short domain CIW71_05385 SM00382 ATPases associated with a variety of cellular activities CIW71_05400 SM00327 von Willebrand factor (vWF) type A domain CIW71_05405 SM00028 Tetratricopeptide repeats CIW71_05405 SM00327 von Willebrand factor (vWF) type A domain CIW71_05425 SM00861 Transketolase, pyrimidine binding domain CIW71_05490 SM00382 ATPases associated with a variety of cellular activities CIW71_05505 SM00849 Metallo-beta-lactamase superfamily CIW71_05530 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CIW71_05585 SM00506 Appr-1"-p processing enzyme CIW71_05620 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_05620 SM00387 Histidine kinase-like ATPases CIW71_05705 SM00967 RNA 2'-O ribose methyltransferase substrate binding CIW71_05735 SM00354 helix_turn _helix lactose operon repressor CIW71_05795 SM00869 Autotransporter beta-domain CIW71_05870 SM00382 ATPases associated with a variety of cellular activities CIW71_05915 SM00318 Staphylococcal nuclease homologues CIW71_05925 SM00528 Domain in histone-like proteins of HNS family CIW71_05935 SM00642 Alpha-amylase domain CIW71_05950 SM00448 cheY-homologous receiver domain CIW71_05950 SM00862 Transcriptional regulatory protein, C terminal CIW71_05955 SM00387 Histidine kinase-like ATPases CIW71_05955 SM00388 His Kinase A (phosphoacceptor) domain CIW71_06020 SM00382 ATPases associated with a variety of cellular activities CIW71_06020 SM00448 cheY-homologous receiver domain CIW71_06025 SM00387 Histidine kinase-like ATPases CIW71_06025 SM00388 His Kinase A (phosphoacceptor) domain CIW71_06035 SM00881 CoA binding domain CIW71_06085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_06095 SM00564 beta-propeller repeat CIW71_06170 SM00062 Bacterial periplasmic substrate-binding proteins CIW71_06180 SM00382 ATPases associated with a variety of cellular activities CIW71_06185 SM00382 ATPases associated with a variety of cellular activities CIW71_06185 SM01086 C-terminal, D2-small domain, of ClpB protein CIW71_06235 SM00855 Phosphoglycerate mutase family CIW71_06340 SM00382 ATPases associated with a variety of cellular activities CIW71_06385 SM00834 Putative regulatory protein CIW71_06420 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CIW71_06435 SM00382 ATPases associated with a variety of cellular activities CIW71_06490 SM00091 PAS domain CIW71_06490 SM00911 HWE histidine kinase CIW71_06495 SM00448 cheY-homologous receiver domain CIW71_06510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_06510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_06535 SM00448 cheY-homologous receiver domain CIW71_06545 SM00341 Helicase and RNase D C-terminal CIW71_06545 SM00487 DEAD-like helicases superfamily CIW71_06545 SM00490 helicase superfamily c-terminal domain CIW71_06545 SM00956 CIW71_06545 CIW71_06560 SM00382 ATPases associated with a variety of cellular activities CIW71_06560 SM00487 DEAD-like helicases superfamily CIW71_06560 SM00490 helicase superfamily c-terminal domain CIW71_06560 SM00847 Helicase associated domain (HA2) Add an annotation CIW71_06615 SM00954 Region found in RelA / SpoT proteins CIW71_06645 SM00491 CIW71_06645 CIW71_06670 SM00448 cheY-homologous receiver domain CIW71_06675 SM00448 cheY-homologous receiver domain CIW71_06680 SM00260 Two component signalling adaptor domain CIW71_06685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_06690 SM00073 Histidine Phosphotransfer domain CIW71_06690 SM00260 Two component signalling adaptor domain CIW71_06690 SM00387 Histidine kinase-like ATPases CIW71_06690 SM00448 cheY-homologous receiver domain CIW71_06690 SM01231 CIW71_06690 CIW71_06700 SM00260 Two component signalling adaptor domain CIW71_06735 SM00369 Leucine-rich repeats, typical (most populated) subfamily CIW71_06775 SM01149 CIW71_06775 CIW71_06815 SM00758 CIW71_06815 CIW71_06815 SM01217 CIW71_06815 CIW71_06830 SM00636 CIW71_06830 CIW71_06835 SM00812 Alpha-L-fucosidase CIW71_06995 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_07055 SM00867 YceI-like domain CIW71_07065 SM00867 YceI-like domain CIW71_07070 SM00387 Histidine kinase-like ATPases CIW71_07070 SM00388 His Kinase A (phosphoacceptor) domain CIW71_07070 SM00448 cheY-homologous receiver domain CIW71_07080 SM00387 Histidine kinase-like ATPases CIW71_07080 SM00388 His Kinase A (phosphoacceptor) domain CIW71_07080 SM00448 cheY-homologous receiver domain CIW71_07085 SM00387 Histidine kinase-like ATPases CIW71_07085 SM00388 His Kinase A (phosphoacceptor) domain CIW71_07085 SM00448 cheY-homologous receiver domain CIW71_07175 SM00422 helix_turn_helix, mercury resistance CIW71_07220 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CIW71_07230 SM00849 Metallo-beta-lactamase superfamily CIW71_07275 SM00421 helix_turn_helix, Lux Regulon CIW71_07345 SM00924 MgtE intracellular N domain CIW71_07395 SM00382 ATPases associated with a variety of cellular activities CIW71_07415 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_07510 SM00054 EF-hand, calcium binding motif CIW71_07540 SM00671 Sel1-like repeats. CIW71_07545 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CIW71_07585 SM00382 ATPases associated with a variety of cellular activities CIW71_07600 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain CIW71_07630 SM00411 bacterial (prokaryotic) histone like domain CIW71_07645 SM00382 ATPases associated with a variety of cellular activities CIW71_07680 SM00732 Likely ribonuclease with RNase H fold. CIW71_07755 SM00829 Enoylreductase CIW71_07765 SM01092 CO dehydrogenase flavoprotein C-terminal domain CIW71_07770 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CIW71_07805 SM00248 ankyrin repeats CIW71_07860 SM00855 Phosphoglycerate mutase family CIW71_07875 SM00155 Phospholipase D. Active site motifs. CIW71_07880 SM00448 cheY-homologous receiver domain CIW71_07885 SM00138 Methyltransferase, chemotaxis proteins CIW71_07890 SM00052 Putative diguanylate phosphodiesterase CIW71_07890 SM00448 cheY-homologous receiver domain CIW71_07895 SM00260 Two component signalling adaptor domain CIW71_07900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_07900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_07905 SM00073 Histidine Phosphotransfer domain CIW71_07905 SM00260 Two component signalling adaptor domain CIW71_07905 SM00387 Histidine kinase-like ATPases CIW71_07905 SM01231 CIW71_07905 CIW71_07940 SM00487 DEAD-like helicases superfamily CIW71_07940 SM00490 helicase superfamily c-terminal domain CIW71_07940 SM00982 CIW71_07940 CIW71_07940 SM01058 CarD-like/TRCF domain CIW71_07955 SM00448 cheY-homologous receiver domain CIW71_07955 SM00862 Transcriptional regulatory protein, C terminal CIW71_07960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_07960 SM00387 Histidine kinase-like ATPases CIW71_07960 SM00388 His Kinase A (phosphoacceptor) domain CIW71_07970 SM00645 Papain family cysteine protease CIW71_08050 SM00342 helix_turn_helix, arabinose operon control protein CIW71_08120 SM00829 Enoylreductase CIW71_08140 SM00342 helix_turn_helix, arabinose operon control protein CIW71_08140 SM00478 endonuclease III CIW71_08140 SM01009 AlkA N-terminal domain CIW71_08185 SM00487 DEAD-like helicases superfamily CIW71_08185 SM00490 helicase superfamily c-terminal domain CIW71_08190 SM00052 Putative diguanylate phosphodiesterase CIW71_08190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_08190 SM00091 PAS domain CIW71_08190 SM00267 diguanylate cyclase CIW71_08195 SM00363 S4 RNA-binding domain CIW71_08200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_08200 SM00267 diguanylate cyclase CIW71_08240 SM00448 cheY-homologous receiver domain CIW71_08240 SM00862 Transcriptional regulatory protein, C terminal CIW71_08275 SM00382 ATPases associated with a variety of cellular activities CIW71_08340 SM01126 CIW71_08340 CIW71_08425 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_08460 SM01351 CIW71_08460 CIW71_08480 SM00977 TilS substrate C-terminal domain CIW71_08490 SM00098 Alkaline phosphatase homologues CIW71_08545 SM01160 CIW71_08545 CIW71_08645 SM00382 ATPases associated with a variety of cellular activities CIW71_08650 SM00530 Helix-turn-helix XRE-family like proteins CIW71_08655 SM00966 SpoVT / AbrB like domain CIW71_08660 SM00530 Helix-turn-helix XRE-family like proteins CIW71_08665 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_08705 SM00257 Lysin motif CIW71_08740 SM00859 Semialdehyde dehydrogenase, NAD binding domain CIW71_08810 SM00052 Putative diguanylate phosphodiesterase CIW71_08810 SM00267 diguanylate cyclase CIW71_08810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_08825 SM00822 CIW71_08825 CIW71_08870 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CIW71_08875 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CIW71_08925 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_08925 SM00322 K homology RNA-binding domain CIW71_08945 SM01387 CIW71_08945 CIW71_08950 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_08950 SM00322 K homology RNA-binding domain CIW71_08970 SM01001 AIR carboxylase CIW71_08990 SM00822 CIW71_08990 CIW71_09055 SM00487 DEAD-like helicases superfamily CIW71_09055 SM00490 helicase superfamily c-terminal domain CIW71_09115 SM00382 ATPases associated with a variety of cellular activities CIW71_09195 SM00642 Alpha-amylase domain CIW71_09200 SM00354 helix_turn _helix lactose operon repressor CIW71_09205 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CIW71_09230 SM00873 B3/4 domain CIW71_09230 SM00874 tRNA synthetase B5 domain CIW71_09230 SM00896 Ferredoxin-fold anticodon binding domain CIW71_09235 SM00411 bacterial (prokaryotic) histone like domain CIW71_09240 SM00422 helix_turn_helix, mercury resistance CIW71_09325 SM00849 Metallo-beta-lactamase superfamily CIW71_09350 SM00861 Transketolase, pyrimidine binding domain CIW71_09355 SM00507 HNH nucleases CIW71_09390 SM00465 GIY-YIG type nucleases (URI domain) CIW71_09410 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_09410 SM00091 PAS domain CIW71_09410 SM00387 Histidine kinase-like ATPases CIW71_09410 SM00388 His Kinase A (phosphoacceptor) domain CIW71_09410 SM00448 cheY-homologous receiver domain CIW71_09420 SM00478 endonuclease III CIW71_09430 SM00382 ATPases associated with a variety of cellular activities CIW71_09430 SM00962 SRP54-type protein, GTPase domain CIW71_09430 SM00963 SRP54-type protein, helical bundle domain CIW71_09435 SM00342 helix_turn_helix, arabinose operon control protein CIW71_09460 SM01130 CIW71_09460 CIW71_09515 SM00944 Pro-kumamolisin, activation domain CIW71_09585 SM00387 Histidine kinase-like ATPases CIW71_09670 SM00344 helix_turn_helix ASNC type CIW71_09685 SM01323 CIW71_09685 CIW71_09725 SM00382 ATPases associated with a variety of cellular activities CIW71_09770 SM00354 helix_turn _helix lactose operon repressor CIW71_09810 SM00448 cheY-homologous receiver domain CIW71_09810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_09815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_09815 SM00091 PAS domain CIW71_09815 SM00387 Histidine kinase-like ATPases CIW71_09815 SM00388 His Kinase A (phosphoacceptor) domain CIW71_09815 SM00448 cheY-homologous receiver domain CIW71_09815 SM01079 CIW71_09815 CIW71_09875 SM00267 diguanylate cyclase CIW71_09875 SM00448 cheY-homologous receiver domain CIW71_09885 SM01230 CIW71_09885 CIW71_09895 SM01230 CIW71_09895 CIW71_09925 SM00382 ATPases associated with a variety of cellular activities CIW71_09955 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_09955 SM01091 Transporter associated domain CIW71_09980 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_10045 SM00487 DEAD-like helicases superfamily CIW71_10045 SM00490 helicase superfamily c-terminal domain CIW71_10055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_10055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_10060 SM00260 Two component signalling adaptor domain CIW71_10065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_10065 SM00267 diguanylate cyclase CIW71_10170 SM00528 Domain in histone-like proteins of HNS family CIW71_10185 SM00474 3'-5' exonuclease CIW71_10230 SM00646 CIW71_10230 CIW71_10235 SM00853 MutL C terminal dimerisation domain CIW71_10235 SM01340 CIW71_10235 CIW71_10260 SM00822 CIW71_10260 CIW71_10275 SM00052 Putative diguanylate phosphodiesterase CIW71_10275 SM00267 diguanylate cyclase CIW71_10285 SM01322 CIW71_10285 CIW71_10290 SM00357 Cold shock protein domain CIW71_10315 SM00487 DEAD-like helicases superfamily CIW71_10315 SM00490 helicase superfamily c-terminal domain CIW71_10320 SM00382 ATPases associated with a variety of cellular activities CIW71_10360 SM00052 Putative diguanylate phosphodiesterase CIW71_10360 SM00267 diguanylate cyclase CIW71_10360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_10370 SM00841 Elongation factor P, C-terminal CIW71_10370 SM01185 CIW71_10370 CIW71_10410 SM00656 CIW71_10410 CIW71_10440 SM00849 Metallo-beta-lactamase superfamily CIW71_10485 SM01234 CIW71_10485 CIW71_10505 SM00840 CIW71_10505 CIW71_10545 SM00859 Semialdehyde dehydrogenase, NAD binding domain CIW71_10560 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CIW71_10575 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CIW71_10605 SM00382 ATPases associated with a variety of cellular activities CIW71_10610 SM00382 ATPases associated with a variety of cellular activities CIW71_10615 SM00357 Cold shock protein domain CIW71_10665 SM00382 ATPases associated with a variety of cellular activities CIW71_10690 SM00363 S4 RNA-binding domain CIW71_10715 SM00354 helix_turn _helix lactose operon repressor CIW71_10795 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_10800 SM00411 bacterial (prokaryotic) histone like domain CIW71_10810 SM00028 Tetratricopeptide repeats CIW71_10820 SM00822 CIW71_10820 CIW71_10845 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_10845 SM01240 CIW71_10845 CIW71_10895 SM00829 Enoylreductase CIW71_10950 SM00382 ATPases associated with a variety of cellular activities CIW71_11015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_11020 SM00421 helix_turn_helix, Lux Regulon CIW71_11020 SM00448 cheY-homologous receiver domain CIW71_11030 SM00342 helix_turn_helix, arabinose operon control protein CIW71_11045 SM00479 CIW71_11045 CIW71_11055 SM00529 Helix-turn-helix diphteria tox regulatory element CIW71_11155 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_11155 SM00732 Likely ribonuclease with RNase H fold. CIW71_11165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_11165 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_11165 SM00091 PAS domain CIW71_11165 SM00387 Histidine kinase-like ATPases CIW71_11165 SM00388 His Kinase A (phosphoacceptor) domain CIW71_11165 SM00448 cheY-homologous receiver domain CIW71_11170 SM00448 cheY-homologous receiver domain CIW71_11275 SM00382 ATPases associated with a variety of cellular activities CIW71_11330 SM00382 ATPases associated with a variety of cellular activities CIW71_11340 SM00849 Metallo-beta-lactamase superfamily CIW71_11355 SM00382 ATPases associated with a variety of cellular activities CIW71_11370 SM00226 Low molecular weight phosphatase family CIW71_11380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CIW71_11380 SM00465 GIY-YIG type nucleases (URI domain) CIW71_11415 SM00382 ATPases associated with a variety of cellular activities CIW71_11425 SM00530 Helix-turn-helix XRE-family like proteins CIW71_11460 SM00382 ATPases associated with a variety of cellular activities CIW71_11570 SM00953 CIW71_11570 CIW71_11645 SM01126 CIW71_11645 CIW71_11745 SM00487 DEAD-like helicases superfamily CIW71_11880 SM00382 ATPases associated with a variety of cellular activities CIW71_11885 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CIW71_11885 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CIW71_11885 SM00493 CIW71_11885 CIW71_11975 SM00382 ATPases associated with a variety of cellular activities CIW71_11990 SM00155 Phospholipase D. Active site motifs. CIW71_12035 SM00823 Phosphopantetheine attachment site CIW71_12035 SM00824 Thioesterase CIW71_12050 SM00984 UDP binding domain CIW71_12070 SM00450 Rhodanese Homology Domain CIW71_12075 SM00421 helix_turn_helix, Lux Regulon CIW71_12075 SM00448 cheY-homologous receiver domain CIW71_12080 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_12085 SM00363 S4 RNA-binding domain CIW71_12215 SM00382 ATPases associated with a variety of cellular activities CIW71_12350 SM00448 cheY-homologous receiver domain CIW71_12350 SM00850 LytTr DNA-binding domain CIW71_12365 SM00869 Autotransporter beta-domain CIW71_12390 SM00387 Histidine kinase-like ATPases CIW71_12390 SM00388 His Kinase A (phosphoacceptor) domain CIW71_12395 SM00421 helix_turn_helix, Lux Regulon CIW71_12395 SM00448 cheY-homologous receiver domain CIW71_12400 SM00869 Autotransporter beta-domain CIW71_12470 SM00852 Probable molybdopterin binding domain CIW71_12505 SM01126 CIW71_12505 CIW71_12680 SM00857 Resolvase, N terminal domain CIW71_12840 SM00450 Rhodanese Homology Domain CIW71_12845 SM00852 Probable molybdopterin binding domain CIW71_12850 SM00382 ATPases associated with a variety of cellular activities CIW71_12855 SM00564 beta-propeller repeat CIW71_12870 SM00028 Tetratricopeptide repeats CIW71_12880 SM00562 CIW71_12880 CIW71_12910 SM00382 ATPases associated with a variety of cellular activities CIW71_12930 SM00382 ATPases associated with a variety of cellular activities CIW71_12930 SM00843 CIW71_12930 CIW71_12950 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_12955 SM00382 ATPases associated with a variety of cellular activities CIW71_12955 SM01086 C-terminal, D2-small domain, of ClpB protein CIW71_12980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_12990 SM00052 Putative diguanylate phosphodiesterase CIW71_12990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_12990 SM00091 PAS domain CIW71_12990 SM00267 diguanylate cyclase CIW71_12995 SM00091 PAS domain CIW71_12995 SM00387 Histidine kinase-like ATPases CIW71_13000 SM00052 Putative diguanylate phosphodiesterase CIW71_13000 SM00267 diguanylate cyclase CIW71_13000 SM00448 cheY-homologous receiver domain CIW71_13005 SM00387 Histidine kinase-like ATPases CIW71_13020 SM00858 CIW71_13020 CIW71_13025 SM00260 Two component signalling adaptor domain CIW71_13025 SM00448 cheY-homologous receiver domain CIW71_13080 SM00047 Lysozyme subfamily 2 CIW71_13120 SM00421 helix_turn_helix, Lux Regulon CIW71_13120 SM00448 cheY-homologous receiver domain CIW71_13130 SM00448 cheY-homologous receiver domain CIW71_13135 SM00382 ATPases associated with a variety of cellular activities CIW71_13160 SM00822 CIW71_13160 CIW71_13225 SM00382 ATPases associated with a variety of cellular activities CIW71_13275 SM00267 diguanylate cyclase CIW71_13285 SM00267 diguanylate cyclase CIW71_13290 SM00052 Putative diguanylate phosphodiesterase CIW71_13290 SM00267 diguanylate cyclase CIW71_13305 SM00382 ATPases associated with a variety of cellular activities CIW71_13305 SM00962 SRP54-type protein, GTPase domain CIW71_13320 SM00448 cheY-homologous receiver domain CIW71_13330 SM00073 Histidine Phosphotransfer domain CIW71_13330 SM00260 Two component signalling adaptor domain CIW71_13330 SM00387 Histidine kinase-like ATPases CIW71_13330 SM01231 CIW71_13330 CIW71_13440 SM00260 Two component signalling adaptor domain CIW71_13450 SM00448 cheY-homologous receiver domain CIW71_13455 SM00073 Histidine Phosphotransfer domain CIW71_13455 SM00260 Two component signalling adaptor domain CIW71_13455 SM00387 Histidine kinase-like ATPases CIW71_13455 SM01231 CIW71_13455 CIW71_13460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13470 SM01049 CIW71_13470 CIW71_13475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13550 SM00260 Two component signalling adaptor domain CIW71_13560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_13560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_13565 SM00138 Methyltransferase, chemotaxis proteins CIW71_13575 SM00448 cheY-homologous receiver domain CIW71_13580 SM00052 Putative diguanylate phosphodiesterase CIW71_13580 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_13580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_13580 SM00091 PAS domain CIW71_13580 SM00267 diguanylate cyclase CIW71_13600 SM00966 SpoVT / AbrB like domain CIW71_13625 SM00073 Histidine Phosphotransfer domain CIW71_13625 SM00387 Histidine kinase-like ATPases CIW71_13625 SM00388 His Kinase A (phosphoacceptor) domain CIW71_13625 SM00448 cheY-homologous receiver domain CIW71_13630 SM00448 cheY-homologous receiver domain CIW71_13630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_13645 SM00937 CIW71_13645 CIW71_13650 SM00850 LytTr DNA-binding domain CIW71_13680 SM00060 Fibronectin type 3 domain CIW71_13700 SM00851 MGS-like domain CIW71_13700 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CIW71_13710 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CIW71_13745 SM00899 CIW71_13745 CIW71_13765 SM00822 CIW71_13765 CIW71_13770 SM00841 Elongation factor P, C-terminal CIW71_13770 SM01185 CIW71_13770 CIW71_13815 SM01007 Class II Aldolase and Adducin N-terminal domain CIW71_13890 SM00100 Cyclic nucleotide-monophosphate binding domain CIW71_13890 SM00419 helix_turn_helix, cAMP Regulatory protein CIW71_14025 SM00014 Acid phosphatase homologues CIW71_14040 SM00387 Histidine kinase-like ATPases CIW71_14045 SM00448 cheY-homologous receiver domain CIW71_14060 SM00052 Putative diguanylate phosphodiesterase CIW71_14060 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_14060 SM00267 diguanylate cyclase CIW71_14140 SM00646 CIW71_14140 CIW71_14180 SM00758 CIW71_14180 CIW71_14225 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW71_14250 SM01130 CIW71_14250 CIW71_14270 SM00670 Large family of predicted nucleotide-binding domains CIW71_14320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_14320 SM00091 PAS domain CIW71_14320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_14340 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CIW71_14355 SM00382 ATPases associated with a variety of cellular activities CIW71_14395 SM00382 ATPases associated with a variety of cellular activities CIW71_14405 SM01103 CIW71_14405 CIW71_14415 SM00257 Lysin motif CIW71_14435 SM00463 Small MutS-related domain CIW71_14460 SM01192 CIW71_14460 CIW71_14460 SM01193 CIW71_14460 CIW71_14485 SM00387 Histidine kinase-like ATPases CIW71_14485 SM00433 TopoisomeraseII CIW71_14515 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_14515 SM01091 Transporter associated domain CIW71_14540 SM00382 ATPases associated with a variety of cellular activities CIW71_14550 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_14705 SM01126 CIW71_14705 CIW71_14775 SM00091 PAS domain CIW71_14775 SM00387 Histidine kinase-like ATPases CIW71_14775 SM00388 His Kinase A (phosphoacceptor) domain CIW71_14775 SM00448 cheY-homologous receiver domain CIW71_14790 SM00448 cheY-homologous receiver domain CIW71_14805 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_14815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_14815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_14860 SM00830 Chorismate mutase type II CIW71_14880 SM00240 Forkhead associated domain CIW71_14900 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_14900 SM00866 CIW71_14900 CIW71_14945 SM00564 beta-propeller repeat CIW71_14950 SM00434 DNA Topoisomerase IV CIW71_14975 SM00292 breast cancer carboxy-terminal domain CIW71_14975 SM00532 Ligase N family CIW71_14985 SM01126 CIW71_14985 CIW71_14995 SM00771 ZipA, C-terminal domain (FtsZ-binding) CIW71_15000 SM00968 SMC proteins Flexible Hinge Domain CIW71_15075 SM00421 helix_turn_helix, Lux Regulon CIW71_15075 SM00448 cheY-homologous receiver domain CIW71_15120 SM00947 Carbonic anhydrase CIW71_15145 SM00479 CIW71_15145 CIW71_15175 SM00981 CIW71_15175 CIW71_15185 SM00382 ATPases associated with a variety of cellular activities CIW71_15205 SM00644 CIW71_15205 CIW71_15215 SM00450 Rhodanese Homology Domain CIW71_15240 SM00478 endonuclease III CIW71_15250 SM00947 Carbonic anhydrase CIW71_15285 SM00382 ATPases associated with a variety of cellular activities CIW71_15300 SM00479 CIW71_15300 CIW71_15305 SM00267 diguanylate cyclase CIW71_15310 SM00967 RNA 2'-O ribose methyltransferase substrate binding CIW71_15320 SM00316 Ribosomal protein S1-like RNA-binding domain CIW71_15320 SM00357 Cold shock protein domain CIW71_15320 SM00955 CIW71_15320 CIW71_15365 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CIW71_15375 SM01018 B12 binding domain CIW71_15395 SM00354 helix_turn _helix lactose operon repressor CIW71_15415 SM00984 UDP binding domain CIW71_15435 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_15440 SM00382 ATPases associated with a variety of cellular activities CIW71_15470 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW71_15470 SM01091 Transporter associated domain CIW71_15490 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CIW71_15500 SM00861 Transketolase, pyrimidine binding domain CIW71_15525 SM00382 ATPases associated with a variety of cellular activities CIW71_15570 SM00271 DnaJ molecular chaperone homology domain CIW71_15650 SM00382 ATPases associated with a variety of cellular activities CIW71_15675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_15675 SM00267 diguanylate cyclase CIW71_15685 SM00267 diguanylate cyclase CIW71_15805 SM00357 Cold shock protein domain CIW71_15830 SM00947 Carbonic anhydrase CIW71_15845 SM00382 ATPases associated with a variety of cellular activities CIW71_15870 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_15900 SM00631 CIW71_15900 CIW71_15905 SM01217 CIW71_15905 CIW71_15930 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_15940 SM00434 DNA Topoisomerase IV CIW71_15970 SM00710 Parallel beta-helix repeats CIW71_15970 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CIW71_15975 SM01172 CIW71_15975 CIW71_15995 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_16005 SM00972 Spore Coat Protein U domain CIW71_16020 SM00972 Spore Coat Protein U domain CIW71_16045 SM00267 diguanylate cyclase CIW71_16075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW71_16115 SM00481 DNA polymerase alpha chain like domain CIW71_16200 SM00382 ATPases associated with a variety of cellular activities CIW71_16395 SM00671 Sel1-like repeats. CIW71_16395 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CIW71_16400 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CIW71_16405 SM00869 Autotransporter beta-domain CIW71_16430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_16430 SM00267 diguanylate cyclase CIW71_16460 SM00487 DEAD-like helicases superfamily CIW71_16460 SM00490 helicase superfamily c-terminal domain CIW71_16475 SM00357 Cold shock protein domain CIW71_16520 SM00448 cheY-homologous receiver domain CIW71_16535 SM00358 Double-stranded RNA binding motif CIW71_16535 SM00535 Ribonuclease III family CIW71_16550 SM00838 Elongation factor G C-terminus CIW71_16555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW71_16605 SM00530 Helix-turn-helix XRE-family like proteins CIW71_16630 SM00812 Alpha-L-fucosidase CIW71_16665 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CIW71_16665 SM00534 ATPase domain of DNA mismatch repair MUTS family CIW71_16730 SM00382 ATPases associated with a variety of cellular activities CIW71_16730 SM00962 SRP54-type protein, GTPase domain CIW71_16730 SM00963 SRP54-type protein, helical bundle domain CIW71_16755 SM00813 Alpha-L-arabinofuranosidase C-terminus CIW71_16765 SM00448 cheY-homologous receiver domain CIW71_16770 SM00091 PAS domain CIW71_16770 SM00387 Histidine kinase-like ATPases CIW71_16770 SM00388 His Kinase A (phosphoacceptor) domain CIW71_16775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_16775 SM00387 Histidine kinase-like ATPases CIW71_16775 SM00388 His Kinase A (phosphoacceptor) domain CIW71_16775 SM00448 cheY-homologous receiver domain CIW71_16780 SM00138 Methyltransferase, chemotaxis proteins CIW71_16790 SM00387 Histidine kinase-like ATPases CIW71_16790 SM00388 His Kinase A (phosphoacceptor) domain CIW71_16790 SM00448 cheY-homologous receiver domain CIW71_16815 SM00387 Histidine kinase-like ATPases CIW71_16815 SM00388 His Kinase A (phosphoacceptor) domain CIW71_16815 SM00448 cheY-homologous receiver domain CIW71_16820 SM00387 Histidine kinase-like ATPases CIW71_16820 SM00388 His Kinase A (phosphoacceptor) domain CIW71_16860 SM00342 helix_turn_helix, arabinose operon control protein CIW71_16865 SM00862 Transcriptional regulatory protein, C terminal CIW71_16875 SM00382 ATPases associated with a variety of cellular activities CIW71_16880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW71_17045 SM00904 Riboflavin kinase CIW71_17135 SM00244 prohibitin homologues CIW71_17165 SM00478 endonuclease III CIW71_17180 SM00421 helix_turn_helix, Lux Regulon CIW71_17180 SM00448 cheY-homologous receiver domain CIW71_17220 SM00387 Histidine kinase-like ATPases CIW71_17220 SM00388 His Kinase A (phosphoacceptor) domain CIW71_17225 SM00448 cheY-homologous receiver domain CIW71_17225 SM00862 Transcriptional regulatory protein, C terminal CIW71_17275 SM01060 CIW71_17275 CIW71_17310 SM00091 PAS domain CIW71_17310 SM00342 helix_turn_helix, arabinose operon control protein CIW71_17360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_17375 SM00481 DNA polymerase alpha chain like domain CIW71_17395 SM00966 SpoVT / AbrB like domain CIW71_17415 SM00974 CIW71_17415 CIW71_17430 SM01092 CO dehydrogenase flavoprotein C-terminal domain CIW71_17435 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CIW71_17445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_17450 SM00052 Putative diguanylate phosphodiesterase CIW71_17510 SM00855 Phosphoglycerate mutase family CIW71_17550 SM00487 DEAD-like helicases superfamily CIW71_17550 SM00490 helicase superfamily c-terminal domain CIW71_17570 SM00382 ATPases associated with a variety of cellular activities CIW71_17595 SM00822 CIW71_17595 CIW71_17610 SM00788 Adenylosuccinate synthetase CIW71_17615 SM01321 CIW71_17615 CIW71_17620 SM00244 prohibitin homologues CIW71_17625 SM00244 prohibitin homologues CIW71_17630 SM00448 cheY-homologous receiver domain CIW71_17635 SM00271 DnaJ molecular chaperone homology domain CIW71_17670 SM01359 CIW71_17670 CIW71_17670 SM01360 CIW71_17670 CIW71_17720 SM00382 ATPases associated with a variety of cellular activities CIW71_17755 SM00825 Beta-ketoacyl synthase CIW71_17765 SM00822 CIW71_17765 CIW71_17770 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CIW71_17815 SM00382 ATPases associated with a variety of cellular activities CIW71_17825 SM00460 Transglutaminase/protease-like homologues CIW71_17840 SM00493 CIW71_17840 CIW71_17850 SM00382 ATPases associated with a variety of cellular activities CIW71_17890 SM00382 ATPases associated with a variety of cellular activities CIW71_17910 SM00530 Helix-turn-helix XRE-family like proteins CIW71_17925 SM00382 ATPases associated with a variety of cellular activities CIW71_17955 SM00528 Domain in histone-like proteins of HNS family CIW71_17970 SM00530 Helix-turn-helix XRE-family like proteins CIW71_18000 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_18005 SM00849 Metallo-beta-lactamase superfamily CIW71_18030 SM00331 Sigma factor PP2C-like phosphatases CIW71_18030 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CIW71_18035 SM00479 CIW71_18035 CIW71_18050 SM00849 Metallo-beta-lactamase superfamily CIW71_18055 SM00257 Lysin motif CIW71_18080 SM00411 bacterial (prokaryotic) histone like domain CIW71_18085 SM00382 ATPases associated with a variety of cellular activities CIW71_18085 SM00464 Found in ATP-dependent protease La (LON) CIW71_18090 SM00382 ATPases associated with a variety of cellular activities CIW71_18090 SM00994 ClpX C4-type zinc finger CIW71_18090 SM01086 C-terminal, D2-small domain, of ClpB protein CIW71_18110 SM00091 PAS domain CIW71_18110 SM00387 Histidine kinase-like ATPases CIW71_18145 SM01329 CIW71_18145 CIW71_18165 SM00448 cheY-homologous receiver domain CIW71_18165 SM00862 Transcriptional regulatory protein, C terminal CIW71_18170 SM00091 PAS domain CIW71_18170 SM00387 Histidine kinase-like ATPases CIW71_18170 SM00388 His Kinase A (phosphoacceptor) domain CIW71_18190 SM00014 Acid phosphatase homologues CIW71_18250 SM00855 Phosphoglycerate mutase family CIW71_18280 SM00829 Enoylreductase CIW71_18290 SM00382 ATPases associated with a variety of cellular activities CIW71_18340 SM00829 Enoylreductase CIW71_18380 SM00838 Elongation factor G C-terminus CIW71_18430 SM00662 RNA polymerases D CIW71_18435 SM00363 S4 RNA-binding domain CIW71_18435 SM01390 CIW71_18435 CIW71_18495 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CIW71_18500 SM01374 CIW71_18500 CIW71_18520 SM00322 K homology RNA-binding domain CIW71_18535 SM01382 CIW71_18535 CIW71_18535 SM01383 CIW71_18535 CIW71_18555 SM01403 CIW71_18555 CIW71_18565 SM00838 Elongation factor G C-terminus CIW71_18565 SM00889 Elongation factor G, domain IV CIW71_18580 SM00663 RNA polymerase I subunit A N-terminus CIW71_18605 SM00649 Ribosomal protein L11/L12 CIW71_18610 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CIW71_18610 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CIW71_18660 SM01400 CIW71_18660 CIW71_18680 SM00028 Tetratricopeptide repeats CIW71_18690 SM00937 CIW71_18690 CIW71_18695 SM00028 Tetratricopeptide repeats CIW71_18700 SM00852 Probable molybdopterin binding domain CIW71_18810 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CIW71_18810 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CIW71_18840 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CIW71_18840 SM00475 5'-3' exonuclease CIW71_18910 SM00421 helix_turn_helix, Lux Regulon CIW71_18915 SM00387 Histidine kinase-like ATPases CIW71_18915 SM00388 His Kinase A (phosphoacceptor) domain CIW71_18915 SM00448 cheY-homologous receiver domain CIW71_18920 SM00448 cheY-homologous receiver domain CIW71_19000 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_19035 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_19035 SM00895 CIW71_19035 CIW71_19085 SM00108 Bulb-type mannose-specific lectin CIW71_19110 SM00650 Ribosomal RNA adenine dimethylases CIW71_19125 SM00382 ATPases associated with a variety of cellular activities CIW71_19185 SM00382 ATPases associated with a variety of cellular activities CIW71_19195 SM00382 ATPases associated with a variety of cellular activities CIW71_19250 SM00448 cheY-homologous receiver domain CIW71_19250 SM00862 Transcriptional regulatory protein, C terminal CIW71_19260 SM00382 ATPases associated with a variety of cellular activities CIW71_19280 SM00382 ATPases associated with a variety of cellular activities CIW71_19405 SM00996 S-adenosyl-L-homocysteine hydrolase CIW71_19405 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CIW71_19440 SM00642 Alpha-amylase domain CIW71_19465 SM00829 Enoylreductase CIW71_19495 SM00957 SecA DEAD-like domain CIW71_19495 SM00958 SecA preprotein cross-linking domain CIW71_19515 SM00864 Tubulin/FtsZ family, GTPase domain CIW71_19515 SM00865 Tubulin/FtsZ family, C-terminal domain CIW71_19520 SM00842 Cell division protein FtsA CIW71_19640 SM00448 cheY-homologous receiver domain CIW71_19640 SM00862 Transcriptional regulatory protein, C terminal CIW71_19645 SM00387 Histidine kinase-like ATPases CIW71_19755 SM00382 ATPases associated with a variety of cellular activities CIW71_19775 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_19795 SM00829 Enoylreductase CIW71_19815 SM00448 cheY-homologous receiver domain CIW71_19815 SM00862 Transcriptional regulatory protein, C terminal CIW71_19820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_19820 SM00387 Histidine kinase-like ATPases CIW71_19820 SM00388 His Kinase A (phosphoacceptor) domain CIW71_19835 SM00342 helix_turn_helix, arabinose operon control protein CIW71_19910 SM00354 helix_turn _helix lactose operon repressor CIW71_19920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_19920 SM00866 CIW71_19920 CIW71_19990 SM00382 ATPases associated with a variety of cellular activities CIW71_20050 SM00387 Histidine kinase-like ATPases CIW71_20050 SM00388 His Kinase A (phosphoacceptor) domain CIW71_20050 SM00448 cheY-homologous receiver domain CIW71_20055 SM00448 cheY-homologous receiver domain CIW71_20060 SM00387 Histidine kinase-like ATPases CIW71_20060 SM00388 His Kinase A (phosphoacceptor) domain CIW71_20065 SM00749 bacterial OsmY and nodulation domain CIW71_20075 SM01350 CIW71_20075 CIW71_20130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW71_20130 SM00245 tail specific protease CIW71_20135 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_20155 SM00936 Penicillin-binding protein 5, C-terminal domain CIW71_20175 SM00710 Parallel beta-helix repeats CIW71_20200 SM00268 Actin CIW71_20210 SM00382 ATPases associated with a variety of cellular activities CIW71_20220 SM00829 Enoylreductase CIW71_20235 SM00062 Bacterial periplasmic substrate-binding proteins CIW71_20235 SM00248 ankyrin repeats CIW71_20240 SM00564 beta-propeller repeat CIW71_20260 SM01263 CIW71_20260 CIW71_20265 SM00267 diguanylate cyclase CIW71_20295 SM00382 ATPases associated with a variety of cellular activities CIW71_20295 SM01086 C-terminal, D2-small domain, of ClpB protein CIW71_20385 SM00448 cheY-homologous receiver domain CIW71_20385 SM00850 LytTr DNA-binding domain CIW71_20420 SM00267 diguanylate cyclase CIW71_20430 SM00637 CIW71_20430 CIW71_20435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW71_20435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_20435 SM01049 CIW71_20435 CIW71_20440 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW71_20440 SM00091 PAS domain CIW71_20440 SM00267 diguanylate cyclase CIW71_20450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_20480 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CIW71_20480 SM01232 CIW71_20480 CIW71_20520 SM00062 Bacterial periplasmic substrate-binding proteins CIW71_20550 SM00267 diguanylate cyclase CIW71_20630 SM00342 helix_turn_helix, arabinose operon control protein CIW71_20650 SM01321 CIW71_20650 CIW71_20675 SM01126 CIW71_20675 CIW71_20705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_20705 SM00331 Sigma factor PP2C-like phosphatases CIW71_20725 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW71_20725 SM00895 CIW71_20725 CIW71_20735 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CIW71_20790 SM00867 YceI-like domain CIW71_20805 SM00944 Pro-kumamolisin, activation domain CIW71_20865 SM00883 Chaperonin 10 Kd subunit CIW71_20895 SM00234 in StAR and phosphatidylcholine transfer protein CIW71_20905 SM00342 helix_turn_helix, arabinose operon control protein CIW71_20935 SM00878 Biotin carboxylase C-terminal domain CIW71_20975 SM00530 Helix-turn-helix XRE-family like proteins CIW71_21000 SM00563 Phosphate acyltransferases CIW71_21020 SM00195 Dual specificity phosphatase, catalytic domain CIW71_21035 SM00798 AICARFT/IMPCHase bienzyme CIW71_21035 SM00851 MGS-like domain CIW71_21045 SM01209 CIW71_21045 CIW71_21045 SM01210 CIW71_21045 CIW71_21070 SM00563 Phosphate acyltransferases CIW71_21130 SM00052 Putative diguanylate phosphodiesterase CIW71_21130 SM00267 diguanylate cyclase CIW71_21130 SM00448 cheY-homologous receiver domain CIW71_21135 SM00387 Histidine kinase-like ATPases CIW71_21135 SM00388 His Kinase A (phosphoacceptor) domain CIW71_21135 SM00448 cheY-homologous receiver domain CIW71_21190 SM00100 Cyclic nucleotide-monophosphate binding domain CIW71_21190 SM00419 helix_turn_helix, cAMP Regulatory protein CIW71_21210 SM00903 Flavin reductase like domain CIW71_21230 SM00046 Diacylglycerol kinase catalytic domain (presumed) CIW71_21250 SM00271 DnaJ molecular chaperone homology domain CIW71_21355 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_21375 SM00237 Domains in Na-Ca exchangers and integrin-beta4 CIW71_21385 SM00861 Transketolase, pyrimidine binding domain CIW71_21390 SM00326 Src homology 3 domains CIW71_21400 SM00487 DEAD-like helicases superfamily CIW71_21400 SM00490 helicase superfamily c-terminal domain CIW71_21410 SM00822 CIW71_21410 CIW71_21460 SM00642 Alpha-amylase domain CIW71_21470 SM00642 Alpha-amylase domain CIW71_21480 SM00642 Alpha-amylase domain CIW71_21485 SM00642 Alpha-amylase domain CIW71_21495 SM00267 diguanylate cyclase CIW71_21560 SM00382 ATPases associated with a variety of cellular activities CIW71_21680 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW71_21680 SM00876 Biotin and Thiamin Synthesis associated domain CIW71_21735 SM01228 CIW71_21735 CIW71_21750 SM00090 RIO-like kinase CIW71_21755 SM00346 helix_turn_helix isocitrate lyase regulation CIW71_21775 SM00998 Adenylosuccinate lyase C-terminus CIW71_21795 SM00882 Coenzyme A transferase CIW71_21800 SM00882 Coenzyme A transferase CIW71_21815 SM00420 helix_turn_helix, Deoxyribose operon repressor CIW71_21815 SM01134 CIW71_21815 CIW71_21850 SM00342 helix_turn_helix, arabinose operon control protein CIW71_21870 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_21875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW71_22035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW71_22035 SM00387 Histidine kinase-like ATPases CIW71_22035 SM00388 His Kinase A (phosphoacceptor) domain CIW71_22040 SM00448 cheY-homologous receiver domain CIW71_22040 SM00862 Transcriptional regulatory protein, C terminal CIW71_22075 SM00422 helix_turn_helix, mercury resistance CIW71_22225 SM00487 DEAD-like helicases superfamily CIW71_22225 SM00490 helicase superfamily c-terminal domain CIW71_22225 SM00847 Helicase associated domain (HA2) Add an annotation CIW71_22255 SM00829 Enoylreductase CIW71_22290 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_22355 SM00953 CIW71_22355 CIW71_22380 SM00878 Biotin carboxylase C-terminal domain CIW71_22405 SM00100 Cyclic nucleotide-monophosphate binding domain CIW71_22405 SM00267 diguanylate cyclase CIW71_22430 SM00342 helix_turn_helix, arabinose operon control protein CIW71_22465 SM00563 Phosphate acyltransferases CIW71_22580 SM00382 ATPases associated with a variety of cellular activities CIW71_22580 SM00448 cheY-homologous receiver domain CIW71_22585 SM00387 Histidine kinase-like ATPases CIW71_22585 SM00388 His Kinase A (phosphoacceptor) domain CIW71_22615 SM00450 Rhodanese Homology Domain CIW71_22675 SM00382 ATPases associated with a variety of cellular activities CIW71_22675 SM00448 cheY-homologous receiver domain CIW71_22680 SM00387 Histidine kinase-like ATPases CIW71_22680 SM00388 His Kinase A (phosphoacceptor) domain CIW71_22690 SM00938 Nitrogen regulatory protein P-II CIW71_22695 SM01230 CIW71_22695 CIW71_22715 SM00028 Tetratricopeptide repeats CIW71_22730 SM00563 Phosphate acyltransferases CIW71_22740 SM00155 Phospholipase D. Active site motifs. CIW71_22745 SM00867 YceI-like domain CIW71_22750 SM00855 Phosphoglycerate mutase family CIW71_22780 SM00530 Helix-turn-helix XRE-family like proteins CIW71_22815 SM00382 ATPases associated with a variety of cellular activities CIW71_22830 SM00382 ATPases associated with a variety of cellular activities CIW71_22850 SM00344 helix_turn_helix ASNC type CIW71_22895 SM00354 helix_turn _helix lactose operon repressor CIW71_22990 SM00836 DALR anticodon binding domain CIW71_23000 SM00382 ATPases associated with a variety of cellular activities CIW71_23090 SM00354 helix_turn _helix lactose operon repressor CIW71_23105 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW71_23175 SM01007 Class II Aldolase and Adducin N-terminal domain CIW71_23205 SM00633 Glycosyl hydrolase family 10 CIW71_23230 SM00633 Glycosyl hydrolase family 10 CIW71_23315 SM00829 Enoylreductase CIW71_23320 SM00563 Phosphate acyltransferases CIW71_23335 SM00354 helix_turn _helix lactose operon repressor CIW71_23355 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CIW71_23395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_23395 SM00388 His Kinase A (phosphoacceptor) domain CIW71_23410 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CIW71_23410 SM01232 CIW71_23410 CIW71_23445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_23445 SM00091 PAS domain CIW71_23500 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW71_23535 SM00155 Phospholipase D. Active site motifs. CIW71_23605 SM00796 Allophanate hydrolase subunit 1 CIW71_23605 SM00797 Allophanate hydrolase subunit 2 CIW71_23605 SM00878 Biotin carboxylase C-terminal domain CIW71_23670 SM00382 ATPases associated with a variety of cellular activities CIW71_23720 SM00829 Enoylreductase CIW71_23770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW71_23770 SM00091 PAS domain CIW71_23770 SM00267 diguanylate cyclase CIW71_23795 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CIW71_23830 SM00014 Acid phosphatase homologues CIW71_23840 SM00028 Tetratricopeptide repeats CIW71_23880 SM00670 Large family of predicted nucleotide-binding domains CIW71_23890 SM00857 Resolvase, N terminal domain CIW71_24080 SM00382 ATPases associated with a variety of cellular activities CIW71_24175 SM00382 ATPases associated with a variety of cellular activities CIW71_24250 SM00857 Resolvase, N terminal domain CIW71_24465 SM00857 Resolvase, N terminal domain CIW71_24650 SM00354 helix_turn _helix lactose operon repressor