locus-tag class description LPY96_00005 PF07015 VirC1 protein LPY96_00040 PF03377 TAL effector repeat LPY96_00070 PF00239 Resolvase, N terminal domain LPY96_00070 PF02796 Helix-turn-helix domain of resolvase LPY96_00090 PF03377 TAL effector repeat LPY96_00145 PF03377 TAL effector repeat LPY96_00175 PF13614 AAA domain LPY96_00240 PF03377 TAL effector repeat LPY96_00280 PF01695 IstB-like ATP binding protein LPY96_00285 PF00665 Integrase core domain LPY96_00285 PF02796 Helix-turn-helix domain of resolvase LPY96_00330 PF13700 Domain of unknown function (DUF4158) LPY96_00330 PF01526 Tn3 transposase DDE domain LPY96_00365 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LPY96_00370 PF03377 TAL effector repeat LPY96_00375 PF03377 TAL effector repeat LPY96_00385 PF13406 Transglycosylase SLT domain LPY96_00400 PF02796 Helix-turn-helix domain of resolvase LPY96_00400 PF00239 Resolvase, N terminal domain LPY96_00415 PF01526 Tn3 transposase DDE domain LPY96_00415 PF13700 Domain of unknown function (DUF4158) LPY96_00420 PF02810 SEC-C motif LPY96_00420 PF03695 Uncharacterised protein family (UPF0149) LPY96_00460 PF01883 Iron-sulfur cluster assembly protein LPY96_00460 PF10609 NUBPL iron-transfer P-loop NTPase LPY96_00500 PF02534 Type IV secretory system Conjugative DNA transfer LPY96_00550 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPY96_00565 PF04610 TrbL/VirB6 plasmid conjugal transfer protein LPY96_00580 PF03743 Bacterial conjugation TrbI-like protein LPY96_00600 PF01131 DNA topoisomerase LPY96_00600 PF01751 Toprim domain LPY96_00675 PF02810 SEC-C motif LPY96_00675 PF03695 Uncharacterised protein family (UPF0149) LPY96_00700 PF00308 Bacterial dnaA protein LPY96_00700 PF08299 Bacterial dnaA protein helix-turn-helix LPY96_00700 PF11638 DnaA N-terminal domain LPY96_00705 PF02767 DNA polymerase III beta subunit, central domain LPY96_00705 PF02768 DNA polymerase III beta subunit, C-terminal domain LPY96_00705 PF00712 DNA polymerase III beta subunit, N-terminal domain LPY96_00710 PF02463 RecF/RecN/SMC N terminal domain LPY96_00715 PF00204 DNA gyrase B LPY96_00715 PF00986 DNA gyrase B subunit, carboxyl terminus LPY96_00715 PF18053 DNA gyrase B subunit insert domain LPY96_00715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_00715 PF01751 Toprim domain LPY96_00725 PF01435 Peptidase family M48 LPY96_00735 PF03544 Gram-negative bacterial TonB protein C-terminal LPY96_00740 PF01618 MotA/TolQ/ExbB proton channel family LPY96_00745 PF02472 Biopolymer transport protein ExbD/TolR LPY96_00750 PF02472 Biopolymer transport protein ExbD/TolR LPY96_00755 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LPY96_00815 PF02796 Helix-turn-helix domain of resolvase LPY96_00815 PF00665 Integrase core domain LPY96_00820 PF01695 IstB-like ATP binding protein LPY96_00895 PF03572 Peptidase family S41 LPY96_00895 PF13180 PDZ domain LPY96_00900 PF01551 Peptidase family M23 LPY96_00910 PF04389 Peptidase family M28 LPY96_00930 PF00150 Cellulase (glycosyl hydrolase family 5) LPY96_00940 PF00150 Cellulase (glycosyl hydrolase family 5) LPY96_00945 PF00150 Cellulase (glycosyl hydrolase family 5) LPY96_00950 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_00950 PF00107 Zinc-binding dehydrogenase LPY96_00965 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LPY96_00965 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_00970 PF01493 GXGXG motif LPY96_00970 PF04898 Glutamate synthase central domain LPY96_00970 PF00310 Glutamine amidotransferases class-II LPY96_00970 PF01645 Conserved region in glutamate synthase LPY96_01020 PF02397 Bacterial sugar transferase LPY96_01025 PF02350 UDP-N-acetylglucosamine 2-epimerase LPY96_01035 PF03808 Glycosyl transferase WecB/TagA/CpsF family LPY96_01040 PF13439 Glycosyltransferase Family 4 LPY96_01040 PF00534 Glycosyl transferases group 1 LPY96_01060 PF13537 Glutamine amidotransferase domain LPY96_01060 PF00733 Asparagine synthase LPY96_01075 PF16363 GDP-mannose 4,6 dehydratase LPY96_01090 PF00664 ABC transporter transmembrane region LPY96_01090 PF00005 ABC transporter LPY96_01100 PF13537 Glutamine amidotransferase domain LPY96_01100 PF00733 Asparagine synthase LPY96_01120 PF02603 HPr Serine kinase N terminus LPY96_01120 PF07475 HPr Serine kinase C-terminal domain LPY96_01125 PF00685 Sulfotransferase domain LPY96_01205 PF00271 Helicase conserved C-terminal domain LPY96_01205 PF00270 DEAD/DEAH box helicase LPY96_01205 PF09369 Domain of unknown function (DUF1998) LPY96_01210 PF03006 Haemolysin-III related LPY96_01230 PF00106 short chain dehydrogenase LPY96_01240 PF03466 LysR substrate binding domain LPY96_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_01280 PF00294 pfkB family carbohydrate kinase LPY96_01290 PF07055 Enoyl reductase FAD binding domain LPY96_01290 PF12241 Trans-2-enoyl-CoA reductase catalytic region LPY96_01290 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LPY96_01295 PF00486 Transcriptional regulatory protein, C terminal LPY96_01295 PF18500 CadC C-terminal domain 1 LPY96_01315 PF00072 Response regulator receiver domain LPY96_01315 PF00196 Bacterial regulatory proteins, luxR family LPY96_01320 PF07730 Histidine kinase LPY96_01325 PF00144 Beta-lactamase LPY96_01330 PF01070 FMN-dependent dehydrogenase LPY96_01335 PF02735 Ku70/Ku80 beta-barrel domain LPY96_01380 PF07883 Cupin domain LPY96_01390 PF07715 TonB-dependent Receptor Plug Domain LPY96_01390 PF00593 TonB dependent receptor LPY96_01395 PF00155 Aminotransferase class I and II LPY96_01400 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LPY96_01430 PF17863 AAA lid domain LPY96_01430 PF07726 ATPase family associated with various cellular activities (AAA) LPY96_01475 PF00085 Thioredoxin LPY96_01495 PF13344 Haloacid dehalogenase-like hydrolase LPY96_01495 PF00293 NUDIX domain LPY96_01530 PF00128 Alpha amylase, catalytic domain LPY96_01530 PF11896 Domain of unknown function (DUF3416) LPY96_01535 PF00128 Alpha amylase, catalytic domain LPY96_01535 PF16657 Maltogenic Amylase, C-terminal domain LPY96_01540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LPY96_01540 PF02806 Alpha amylase, C-terminal all-beta domain LPY96_01540 PF00128 Alpha amylase, catalytic domain LPY96_01550 PF03377 TAL effector repeat LPY96_01560 PF03377 TAL effector repeat LPY96_01630 PF03524 Conjugal transfer protein LPY96_01635 PF03743 Bacterial conjugation TrbI-like protein LPY96_01640 PF00437 Type II/IV secretion system protein LPY96_01645 PF01464 Transglycosylase SLT domain LPY96_01670 PF18340 DNA relaxase TraI 2B/2B-like domain LPY96_01670 PF07057 DNA helicase TraI LPY96_01670 PF18272 single-stranded DNA binding TraI N-terminal subdomain LPY96_01670 PF07057 DNA helicase TraI LPY96_01670 PF18272 single-stranded DNA binding TraI N-terminal subdomain LPY96_01670 PF08751 TrwC relaxase LPY96_01670 PF08751 TrwC relaxase LPY96_01670 PF18340 DNA relaxase TraI 2B/2B-like domain LPY96_01705 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LPY96_01710 PF04221 RelB antitoxin LPY96_01715 PF02796 Helix-turn-helix domain of resolvase LPY96_01715 PF00239 Resolvase, N terminal domain LPY96_01730 PF13614 AAA domain LPY96_01735 PF03377 TAL effector repeat LPY96_01755 PF13360 PQQ-like domain LPY96_01755 PF01011 PQQ enzyme repeat LPY96_01755 PF13570 PQQ-like domain LPY96_01770 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LPY96_01770 PF06165 Glycosyltransferase family 36 LPY96_01785 PF02659 Putative manganese efflux pump LPY96_01790 PF09339 IclR helix-turn-helix domain LPY96_01790 PF01614 Bacterial transcriptional regulator LPY96_01795 PF07690 Major Facilitator Superfamily LPY96_01800 PF05336 L-rhamnose mutarotase LPY96_01805 PF13378 Enolase C-terminal domain-like LPY96_01805 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LPY96_01810 PF01557 Fumarylacetoacetate (FAA) hydrolase family LPY96_01825 PF00248 Aldo/keto reductase family LPY96_01855 PF00072 Response regulator receiver domain LPY96_01855 PF00196 Bacterial regulatory proteins, luxR family LPY96_01860 PF16177 Acetyl-coenzyme A synthetase N-terminus LPY96_01860 PF00501 AMP-binding enzyme LPY96_01860 PF13193 AMP-binding enzyme C-terminal domain LPY96_01870 PF04341 Protein of unknown function, DUF485 LPY96_01875 PF00474 Sodium:solute symporter family LPY96_01885 PF09312 SurA N-terminal domain LPY96_01885 PF00639 PPIC-type PPIASE domain LPY96_01895 PF00480 ROK family LPY96_01900 PF03372 Endonuclease/Exonuclease/phosphatase family LPY96_01910 PF04226 Transglycosylase associated protein LPY96_01915 PF01648 4'-phosphopantetheinyl transferase superfamily LPY96_01920 PF09423 PhoD-like phosphatase LPY96_01920 PF16655 PhoD-like phosphatase, N-terminal domain LPY96_01925 PF16655 PhoD-like phosphatase, N-terminal domain LPY96_01925 PF09423 PhoD-like phosphatase LPY96_01930 PF02527 rRNA small subunit methyltransferase G LPY96_01950 PF13533 Biotin-lipoyl like LPY96_01960 PF00873 AcrB/AcrD/AcrF family LPY96_01965 PF00830 Ribosomal L28 family LPY96_01970 PF00471 Ribosomal protein L33 LPY96_01975 PF04909 Amidohydrolase LPY96_01980 PF04303 PrpF protein LPY96_01985 PF03737 Aldolase/RraA LPY96_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_01990 PF03466 LysR substrate binding domain LPY96_01995 PF13091 PLD-like domain LPY96_01995 PF13396 Phospholipase_D-nuclease N-terminal LPY96_02005 PF00580 UvrD/REP helicase N-terminal domain LPY96_02005 PF13361 UvrD-like helicase C-terminal domain LPY96_02015 PF14602 Hexapeptide repeat of succinyl-transferase LPY96_02015 PF12464 Maltose acetyltransferase LPY96_02030 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LPY96_02035 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LPY96_02040 PF05638 Type VI secretion system effector, Hcp LPY96_02045 PF07024 ImpE protein LPY96_02050 PF04965 Gene 25-like lysozyme LPY96_02055 PF05947 Type VI secretion system, TssF LPY96_02115 PF00328 Histidine phosphatase superfamily (branch 2) LPY96_02130 PF08281 Sigma-70, region 4 LPY96_02130 PF04542 Sigma-70 region 2 LPY96_02140 PF03793 PASTA domain LPY96_02140 PF00069 Protein kinase domain LPY96_02155 PF04717 Type VI secretion system, phage-baseplate injector LPY96_02170 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LPY96_02195 PF03793 PASTA domain LPY96_02195 PF00069 Protein kinase domain LPY96_02215 PF06812 ImpA, N-terminal, type VI secretion system LPY96_02225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPY96_02225 PF01367 5'-3' exonuclease, C-terminal SAM fold LPY96_02225 PF00476 DNA polymerase family A LPY96_02225 PF01612 3'-5' exonuclease LPY96_02230 PF01218 Coproporphyrinogen III oxidase LPY96_02245 PF00326 Prolyl oligopeptidase family LPY96_02245 PF07676 WD40-like Beta Propeller Repeat LPY96_02260 PF04820 Tryptophan halogenase LPY96_02265 PF00550 Phosphopantetheine attachment site LPY96_02275 PF01553 Acyltransferase LPY96_02335 PF00535 Glycosyl transferase family 2 LPY96_02345 PF02801 Beta-ketoacyl synthase, C-terminal domain LPY96_02345 PF00109 Beta-ketoacyl synthase, N-terminal domain LPY96_02350 PF05166 YcgL domain LPY96_02365 PF00723 Glycosyl hydrolases family 15 LPY96_02370 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LPY96_02370 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LPY96_02375 PF00999 Sodium/hydrogen exchanger family LPY96_02375 PF02254 TrkA-N domain LPY96_02380 PF00194 Eukaryotic-type carbonic anhydrase LPY96_02385 PF00571 CBS domain LPY96_02385 PF03448 MgtE intracellular N domain LPY96_02385 PF01769 Divalent cation transporter LPY96_02395 PF13380 CoA binding domain LPY96_02395 PF13607 Succinyl-CoA ligase like flavodoxin domain LPY96_02395 PF00583 Acetyltransferase (GNAT) family LPY96_02405 PF03477 ATP cone domain LPY96_02405 PF02867 Ribonucleotide reductase, barrel domain LPY96_02405 PF00317 Ribonucleotide reductase, all-alpha domain LPY96_02410 PF00268 Ribonucleotide reductase, small chain LPY96_02445 PF02558 Ketopantoate reductase PanE/ApbA LPY96_02445 PF08546 Ketopantoate reductase PanE/ApbA C terminal LPY96_02455 PF01061 ABC-2 type transporter LPY96_02460 PF00005 ABC transporter LPY96_02465 PF00111 2Fe-2S iron-sulfur cluster binding domain LPY96_02465 PF00970 Oxidoreductase FAD-binding domain LPY96_02465 PF00175 Oxidoreductase NAD-binding domain LPY96_02470 PF01965 DJ-1/PfpI family LPY96_02470 PF12833 Helix-turn-helix domain LPY96_02480 PF00593 TonB dependent receptor LPY96_02480 PF07715 TonB-dependent Receptor Plug Domain LPY96_02490 PF16916 Dimerisation domain of Zinc Transporter LPY96_02490 PF01545 Cation efflux family LPY96_02495 PF02583 Metal-sensitive transcriptional repressor LPY96_02500 PF01229 Glycosyl hydrolases family 39 LPY96_02510 PF01381 Helix-turn-helix LPY96_02520 PF00005 ABC transporter LPY96_02535 PF04820 Tryptophan halogenase LPY96_02555 PF00043 Glutathione S-transferase, C-terminal domain LPY96_02555 PF02798 Glutathione S-transferase, N-terminal domain LPY96_02560 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LPY96_02560 PF00326 Prolyl oligopeptidase family LPY96_02595 PF00490 Delta-aminolevulinic acid dehydratase LPY96_02610 PF03466 LysR substrate binding domain LPY96_02610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_02620 PF00667 FAD binding domain LPY96_02620 PF00258 Flavodoxin LPY96_02620 PF00175 Oxidoreductase NAD-binding domain LPY96_02630 PF08501 Shikimate dehydrogenase substrate binding domain LPY96_02630 PF01488 Shikimate / quinate 5-dehydrogenase LPY96_02630 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LPY96_02645 PF06733 DEAD_2 LPY96_02645 PF13307 Helicase C-terminal domain LPY96_02650 PF00199 Catalase LPY96_02650 PF06628 Catalase-related immune-responsive LPY96_02665 PF01207 Dihydrouridine synthase (Dus) LPY96_02675 PF00486 Transcriptional regulatory protein, C terminal LPY96_02675 PF00072 Response regulator receiver domain LPY96_02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_02695 PF06167 Glucose-regulated metallo-peptidase M90 LPY96_02705 PF03099 Biotin/lipoate A/B protein ligase family LPY96_02705 PF08279 HTH domain LPY96_02705 PF02237 Biotin protein ligase C terminal domain LPY96_02710 PF03309 Type III pantothenate kinase LPY96_02740 PF02223 Thymidylate kinase LPY96_02765 PF00491 Arginase family LPY96_02780 PF05532 CsbD-like LPY96_02785 PF00579 tRNA synthetases class I (W and Y) LPY96_02790 PF00753 Metallo-beta-lactamase superfamily LPY96_02805 PF00892 EamA-like transporter family LPY96_02810 PF00892 EamA-like transporter family LPY96_02830 PF00005 ABC transporter LPY96_02835 PF13533 Biotin-lipoyl like LPY96_02840 PF07730 Histidine kinase LPY96_02845 PF00072 Response regulator receiver domain LPY96_02845 PF00196 Bacterial regulatory proteins, luxR family LPY96_02860 PF00199 Catalase LPY96_02865 PF08281 Sigma-70, region 4 LPY96_02865 PF04542 Sigma-70 region 2 LPY96_02875 PF00883 Cytosol aminopeptidase family, catalytic domain LPY96_02875 PF02789 Cytosol aminopeptidase family, N-terminal domain LPY96_02880 PF13419 Haloacid dehalogenase-like hydrolase LPY96_02885 PF01594 AI-2E family transporter LPY96_02905 PF00595 PDZ domain LPY96_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_02930 PF00512 His Kinase A (phospho-acceptor) domain LPY96_02930 PF08521 Two-component sensor kinase N-terminal LPY96_02935 PF00072 Response regulator receiver domain LPY96_02935 PF00486 Transcriptional regulatory protein, C terminal LPY96_02940 PF08338 Domain of unknown function (DUF1731) LPY96_02940 PF01370 NAD dependent epimerase/dehydratase family LPY96_02980 PF01139 tRNA-splicing ligase RtcB LPY96_02990 PF00440 Bacterial regulatory proteins, tetR family LPY96_02995 PF00970 Oxidoreductase FAD-binding domain LPY96_02995 PF00111 2Fe-2S iron-sulfur cluster binding domain LPY96_02995 PF00175 Oxidoreductase NAD-binding domain LPY96_03000 PF00487 Fatty acid desaturase LPY96_03005 PF12792 CSS motif domain associated with EAL LPY96_03005 PF00563 EAL domain LPY96_03020 PF01078 Magnesium chelatase, subunit ChlI LPY96_03020 PF13335 Magnesium chelatase, subunit ChlI C-terminal LPY96_03025 PF04380 Membrane fusogenic activity LPY96_03030 PF00543 Nitrogen regulatory protein P-II LPY96_03055 PF17284 Spermidine synthase tetramerisation domain LPY96_03060 PF17810 Arginine decarboxylase helical bundle domain LPY96_03060 PF17944 Arginine decarboxylase C-terminal helical extension LPY96_03060 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LPY96_03070 PF03033 Glycosyltransferase family 28 N-terminal domain LPY96_03080 PF00106 short chain dehydrogenase LPY96_03095 PF00750 tRNA synthetases class I (R) LPY96_03095 PF05746 DALR anticodon binding domain LPY96_03095 PF03485 Arginyl tRNA synthetase N terminal domain LPY96_03100 PF04002 RadC-like JAB domain LPY96_03105 PF02441 Flavoprotein LPY96_03105 PF04127 DNA / pantothenate metabolism flavoprotein LPY96_03110 PF00692 dUTPase LPY96_03115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPY96_03115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPY96_03115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPY96_03115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPY96_03130 PF00535 Glycosyl transferase family 2 LPY96_03135 PF01370 NAD dependent epimerase/dehydratase family LPY96_03145 PF17762 HTH domain found in ParB protein LPY96_03145 PF02195 ParB-like nuclease domain LPY96_03150 PF13614 AAA domain LPY96_03160 PF00156 Phosphoribosyl transferase domain LPY96_03165 PF03372 Endonuclease/Exonuclease/phosphatase family LPY96_03170 PF07690 Major Facilitator Superfamily LPY96_03180 PF03702 Anhydro-N-acetylmuramic acid kinase LPY96_03185 PF04225 Opacity-associated protein A LysM-like domain LPY96_03185 PF01551 Peptidase family M23 LPY96_03190 PF00579 tRNA synthetases class I (W and Y) LPY96_03220 PF00171 Aldehyde dehydrogenase family LPY96_03220 PF14850 DNA-binding domain of Proline dehydrogenase LPY96_03220 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LPY96_03220 PF01619 Proline dehydrogenase LPY96_03230 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LPY96_03230 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LPY96_03235 PF00115 Cytochrome C and Quinol oxidase polypeptide I LPY96_03245 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LPY96_03250 PF00510 Cytochrome c oxidase subunit III LPY96_03275 PF01040 UbiA prenyltransferase family LPY96_03285 PF13593 SBF-like CPA transporter family (DUF4137) LPY96_03290 PF10410 DnaB-helicase binding domain of primase LPY96_03290 PF01807 CHC2 zinc finger LPY96_03290 PF08275 DNA primase catalytic core, N-terminal domain LPY96_03290 PF08278 DNA primase DnaG DnaB-binding LPY96_03295 PF03631 Virulence factor BrkB LPY96_03305 PF01165 Ribosomal protein S21 LPY96_03310 PF00814 Glycoprotease family LPY96_03315 PF02152 Dihydroneopterin aldolase LPY96_03320 PF14310 Fibronectin type III-like domain LPY96_03320 PF00933 Glycosyl hydrolase family 3 N terminal domain LPY96_03320 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPY96_03325 PF07995 Glucose / Sorbosone dehydrogenase LPY96_03330 PF05360 yiaA/B two helix domain LPY96_03345 PF13520 Amino acid permease LPY96_03355 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LPY96_03355 PF13378 Enolase C-terminal domain-like LPY96_03365 PF01510 N-acetylmuramoyl-L-alanine amidase LPY96_03410 PF07063 Domain of unknown function (DUF1338) LPY96_03415 PF00873 AcrB/AcrD/AcrF family LPY96_03420 PF00873 AcrB/AcrD/AcrF family LPY96_03425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_03430 PF01546 Peptidase family M20/M25/M40 LPY96_03430 PF07687 Peptidase dimerisation domain LPY96_03435 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LPY96_03435 PF14489 QueF-like protein LPY96_03450 PF03971 Monomeric isocitrate dehydrogenase LPY96_03460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_03460 PF03466 LysR substrate binding domain LPY96_03465 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LPY96_03470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPY96_03470 PF07498 Rho termination factor, N-terminal domain LPY96_03470 PF07497 Rho termination factor, RNA-binding domain LPY96_03475 PF00085 Thioredoxin LPY96_03480 PF00271 Helicase conserved C-terminal domain LPY96_03480 PF12300 ATP-dependent RNA helicase RhlB LPY96_03480 PF00270 DEAD/DEAH box helicase LPY96_03485 PF00005 ABC transporter LPY96_03490 PF18075 FtsX extracellular domain LPY96_03495 PF01339 CheB methylesterase LPY96_03495 PF00072 Response regulator receiver domain LPY96_03500 PF03167 Uracil DNA glycosylase superfamily LPY96_03505 PF04542 Sigma-70 region 2 LPY96_03505 PF04545 Sigma-70, region 4 LPY96_03510 PF03458 UPF0126 domain LPY96_03515 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_03530 PF00043 Glutathione S-transferase, C-terminal domain LPY96_03530 PF13417 Glutathione S-transferase, N-terminal domain LPY96_03535 PF00270 DEAD/DEAH box helicase LPY96_03535 PF00271 Helicase conserved C-terminal domain LPY96_03535 PF17764 3′ DNA-binding domain (3′BD) LPY96_03535 PF18074 Primosomal protein N C-terminal domain LPY96_03535 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LPY96_03555 PF01554 MatE LPY96_03560 PF01343 Peptidase family S49 LPY96_03585 PF01300 Telomere recombination LPY96_03590 PF13368 Topoisomerase C-terminal repeat LPY96_03590 PF01751 Toprim domain LPY96_03590 PF01131 DNA topoisomerase LPY96_03600 PF00114 Pilin (bacterial filament) LPY96_03600 PF07963 Prokaryotic N-terminal methylation motif LPY96_03605 PF04361 Protein of unknown function (DUF494) LPY96_03610 PF02481 DNA recombination-mediator protein A LPY96_03610 PF17782 DprA winged helix domain LPY96_03615 PF01476 LysM domain LPY96_03620 PF01327 Polypeptide deformylase LPY96_03625 PF00551 Formyl transferase LPY96_03625 PF02911 Formyl transferase, C-terminal domain LPY96_03630 PF01189 16S rRNA methyltransferase RsmB/F LPY96_03630 PF01029 NusB family LPY96_03645 PF00535 Glycosyl transferase family 2 LPY96_03665 PF00925 GTP cyclohydrolase II LPY96_03680 PF03279 Bacterial lipid A biosynthesis acyltransferase LPY96_03685 PF02580 D-Tyr-tRNA(Tyr) deacylase LPY96_03690 PF04545 Sigma-70, region 4 LPY96_03690 PF00140 Sigma-70 factor, region 1.2 LPY96_03690 PF04542 Sigma-70 region 2 LPY96_03690 PF03979 Sigma-70 factor, region 1.1 LPY96_03690 PF04546 Sigma-70, non-essential region LPY96_03690 PF04539 Sigma-70 region 3 LPY96_03705 PF13356 Arm DNA-binding domain LPY96_03705 PF00589 Phage integrase family LPY96_03710 PF12728 Helix-turn-helix domain LPY96_03740 PF00271 Helicase conserved C-terminal domain LPY96_03740 PF00176 SNF2 family N-terminal domain LPY96_03765 PF00557 Metallopeptidase family M24 LPY96_03805 PF02525 Flavodoxin-like fold LPY96_03810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_03810 PF03466 LysR substrate binding domain LPY96_03825 PF03466 LysR substrate binding domain LPY96_03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_03835 PF00005 ABC transporter LPY96_03855 PF07715 TonB-dependent Receptor Plug Domain LPY96_03855 PF00593 TonB dependent receptor LPY96_03900 PF13823 Alcohol dehydrogenase GroES-associated LPY96_03900 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_03900 PF00107 Zinc-binding dehydrogenase LPY96_03915 PF00664 ABC transporter transmembrane region LPY96_03915 PF00005 ABC transporter LPY96_03925 PF03275 UDP-galactopyranose mutase LPY96_03935 PF16363 GDP-mannose 4,6 dehydratase LPY96_03955 PF02322 Cytochrome bd terminal oxidase subunit II LPY96_03960 PF01654 Cytochrome bd terminal oxidase subunit I LPY96_03970 PF02954 Bacterial regulatory protein, Fis family LPY96_03970 PF00072 Response regulator receiver domain LPY96_03970 PF00158 Sigma-54 interaction domain LPY96_04005 PF05067 Manganese containing catalase LPY96_04010 PF05974 Domain of unknown function (DUF892) LPY96_04030 PF02743 Cache domain LPY96_04030 PF00672 HAMP domain LPY96_04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_04030 PF06580 Histidine kinase LPY96_04035 PF04397 LytTr DNA-binding domain LPY96_04035 PF00072 Response regulator receiver domain LPY96_04045 PF13520 Amino acid permease LPY96_04065 PF05649 Peptidase family M13 LPY96_04065 PF01431 Peptidase family M13 LPY96_04075 PF00248 Aldo/keto reductase family LPY96_04080 PF03358 NADPH-dependent FMN reductase LPY96_04085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_04085 PF03466 LysR substrate binding domain LPY96_04095 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LPY96_04105 PF03167 Uracil DNA glycosylase superfamily LPY96_04110 PF02469 Fasciclin domain LPY96_04115 PF00999 Sodium/hydrogen exchanger family LPY96_04120 PF00005 ABC transporter LPY96_04125 PF01061 ABC-2 type transporter LPY96_04150 PF13677 Membrane MotB of proton-channel complex MotA/MotB LPY96_04150 PF00691 OmpA family LPY96_04155 PF01618 MotA/TolQ/ExbB proton channel family LPY96_04165 PF01641 SelR domain LPY96_04175 PF01037 Lrp/AsnC ligand binding domain LPY96_04180 PF01266 FAD dependent oxidoreductase LPY96_04205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_04205 PF00512 His Kinase A (phospho-acceptor) domain LPY96_04205 PF00989 PAS fold LPY96_04215 PF07995 Glucose / Sorbosone dehydrogenase LPY96_04225 PF05175 Methyltransferase small domain LPY96_04225 PF08468 Methyltransferase small domain N-terminal LPY96_04230 PF01479 S4 domain LPY96_04230 PF00849 RNA pseudouridylate synthase LPY96_04235 PF13419 Haloacid dehalogenase-like hydrolase LPY96_04255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_04255 PF00512 His Kinase A (phospho-acceptor) domain LPY96_04255 PF18415 Histidine kinase receptor ArcB trans-membrane domain LPY96_04255 PF00989 PAS fold LPY96_04255 PF00072 Response regulator receiver domain LPY96_04255 PF01627 Hpt domain LPY96_04265 PF04461 Protein of unknown function (DUF520) LPY96_04270 PF00892 EamA-like transporter family LPY96_04275 PF00005 ABC transporter LPY96_04275 PF09383 NIL domain LPY96_04280 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_04330 PF02817 e3 binding domain LPY96_04330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPY96_04330 PF00364 Biotin-requiring enzyme LPY96_04340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPY96_04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_04360 PF00119 ATP synthase A chain LPY96_04365 PF00137 ATP synthase subunit C LPY96_04370 PF00430 ATP synthase B/B' CF(0) LPY96_04375 PF00213 ATP synthase delta (OSCP) subunit LPY96_04380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPY96_04380 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPY96_04380 PF00306 ATP synthase alpha/beta chain, C terminal domain LPY96_04385 PF00231 ATP synthase LPY96_04390 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPY96_04390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPY96_04395 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LPY96_04395 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LPY96_04410 PF00132 Bacterial transferase hexapeptide (six repeats) LPY96_04410 PF14602 Hexapeptide repeat of succinyl-transferase LPY96_04410 PF12804 MobA-like NTP transferase domain LPY96_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_04415 PF00512 His Kinase A (phospho-acceptor) domain LPY96_04420 PF02954 Bacterial regulatory protein, Fis family LPY96_04420 PF00072 Response regulator receiver domain LPY96_04420 PF00158 Sigma-54 interaction domain LPY96_04430 PF12704 MacB-like periplasmic core domain LPY96_04430 PF02687 FtsX-like permease family LPY96_04435 PF02687 FtsX-like permease family LPY96_04435 PF12704 MacB-like periplasmic core domain LPY96_04440 PF00005 ABC transporter LPY96_04440 PF02687 FtsX-like permease family LPY96_04440 PF12704 MacB-like periplasmic core domain LPY96_04445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_04450 PF01380 SIS domain LPY96_04480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LPY96_04485 PF05275 Copper resistance protein B precursor (CopB) LPY96_04490 PF00394 Multicopper oxidase LPY96_04490 PF07731 Multicopper oxidase LPY96_04490 PF07732 Multicopper oxidase LPY96_04505 PF01432 Peptidase family M3 LPY96_04515 PF00109 Beta-ketoacyl synthase, N-terminal domain LPY96_04515 PF02801 Beta-ketoacyl synthase, C-terminal domain LPY96_04520 PF07977 FabA-like domain LPY96_04525 PF11799 impB/mucB/samB family C-terminal domain LPY96_04525 PF00817 impB/mucB/samB family LPY96_04530 PF13419 Haloacid dehalogenase-like hydrolase LPY96_04535 PF07715 TonB-dependent Receptor Plug Domain LPY96_04535 PF00593 TonB dependent receptor LPY96_04540 PF00756 Putative esterase LPY96_04550 PF13185 GAF domain LPY96_04565 PF01242 6-pyruvoyl tetrahydropterin synthase LPY96_04570 PF07715 TonB-dependent Receptor Plug Domain LPY96_04570 PF00593 TonB dependent receptor LPY96_04580 PF00271 Helicase conserved C-terminal domain LPY96_04580 PF00270 DEAD/DEAH box helicase LPY96_04590 PF14497 Glutathione S-transferase, C-terminal domain LPY96_04590 PF02798 Glutathione S-transferase, N-terminal domain LPY96_04595 PF00437 Type II/IV secretion system protein LPY96_04615 PF00571 CBS domain LPY96_04615 PF00291 Pyridoxal-phosphate dependent enzyme LPY96_04620 PF01053 Cys/Met metabolism PLP-dependent enzyme LPY96_04625 PF13439 Glycosyltransferase Family 4 LPY96_04625 PF00534 Glycosyl transferases group 1 LPY96_04635 PF00005 ABC transporter LPY96_04640 PF13847 Methyltransferase domain LPY96_04640 PF00069 Protein kinase domain LPY96_04645 PF00534 Glycosyl transferases group 1 LPY96_04645 PF13477 Glycosyl transferase 4-like LPY96_04650 PF16363 GDP-mannose 4,6 dehydratase LPY96_04655 PF16363 GDP-mannose 4,6 dehydratase LPY96_04665 PF05050 Methyltransferase FkbM domain LPY96_04675 PF01593 Flavin containing amine oxidoreductase LPY96_04685 PF00535 Glycosyl transferase family 2 LPY96_04695 PF01012 Electron transfer flavoprotein domain LPY96_04695 PF00766 Electron transfer flavoprotein FAD-binding domain LPY96_04700 PF01012 Electron transfer flavoprotein domain LPY96_04705 PF16363 GDP-mannose 4,6 dehydratase LPY96_04710 PF00483 Nucleotidyl transferase LPY96_04715 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LPY96_04720 PF04321 RmlD substrate binding domain LPY96_04725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPY96_04725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPY96_04725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPY96_04730 PF00483 Nucleotidyl transferase LPY96_04730 PF01050 Mannose-6-phosphate isomerase LPY96_04735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPY96_04735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPY96_04735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPY96_04735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPY96_04740 PF01144 Coenzyme A transferase LPY96_04745 PF01144 Coenzyme A transferase LPY96_04765 PF03886 ABC-type transport auxiliary lipoprotein component LPY96_04765 PF02470 MlaD protein LPY96_04770 PF00005 ABC transporter LPY96_04775 PF02405 Permease MlaE LPY96_04785 PF00816 H-NS histone family LPY96_04790 PF03129 Anticodon binding domain LPY96_04790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPY96_04790 PF04073 Aminoacyl-tRNA editing domain LPY96_04800 PF01066 CDP-alcohol phosphatidyltransferase LPY96_04820 PF00544 Pectate lyase LPY96_04825 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LPY96_04825 PF01464 Transglycosylase SLT domain LPY96_04835 PF08264 Anticodon-binding domain of tRNA LPY96_04835 PF00133 tRNA synthetases class I (I, L, M and V) LPY96_04835 PF10458 Valyl tRNA synthetase tRNA binding arm LPY96_04850 PF00883 Cytosol aminopeptidase family, catalytic domain LPY96_04850 PF02789 Cytosol aminopeptidase family, N-terminal domain LPY96_04875 PF00589 Phage integrase family LPY96_04875 PF02899 Phage integrase, N-terminal SAM-like domain LPY96_04880 PF13098 Thioredoxin-like domain LPY96_04880 PF10411 Disulfide bond isomerase protein N-terminus LPY96_04890 PF13018 Extended Signal Peptide of Type V secretion system LPY96_04890 PF03895 YadA-like membrane anchor domain LPY96_04890 PF05658 Head domain of trimeric autotransporter adhesin LPY96_04890 PF05662 Coiled stalk of trimeric autotransporter adhesin LPY96_04895 PF00082 Subtilase family LPY96_04895 PF04151 Bacterial pre-peptidase C-terminal domain LPY96_04905 PF03895 YadA-like membrane anchor domain LPY96_04905 PF05658 Head domain of trimeric autotransporter adhesin LPY96_04905 PF05662 Coiled stalk of trimeric autotransporter adhesin LPY96_04905 PF13018 Extended Signal Peptide of Type V secretion system LPY96_04910 PF04151 Bacterial pre-peptidase C-terminal domain LPY96_04910 PF00082 Subtilase family LPY96_04915 PF00437 Type II/IV secretion system protein LPY96_04915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPY96_04920 PF00482 Type II secretion system (T2SS), protein F LPY96_04925 PF08334 Type II secretion system (T2SS), protein G LPY96_04930 PF12019 Type II transport protein GspH LPY96_04935 PF07963 Prokaryotic N-terminal methylation motif LPY96_04945 PF03934 Type II secretion system (T2SS), protein K LPY96_04950 PF05137 Fimbrial assembly protein (PilN) LPY96_04955 PF10741 Type II secretion system (T2SS), protein M subtype b LPY96_04965 PF03958 Bacterial type II/III secretion system short domain LPY96_04965 PF00263 Bacterial type II and III secretion system protein LPY96_04980 PF00392 Bacterial regulatory proteins, gntR family LPY96_04980 PF07702 UTRA domain LPY96_04990 PF07715 TonB-dependent Receptor Plug Domain LPY96_04990 PF00593 TonB dependent receptor LPY96_05025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LPY96_05025 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LPY96_05040 PF00535 Glycosyl transferase family 2 LPY96_05040 PF07238 PilZ domain LPY96_05040 PF03552 Cellulose synthase LPY96_05045 PF03170 Bacterial cellulose synthase subunit LPY96_05050 PF01270 Glycosyl hydrolases family 8 LPY96_05055 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LPY96_05070 PF03960 ArsC family LPY96_05075 PF01327 Polypeptide deformylase LPY96_05080 PF02645 Uncharacterised protein, DegV family COG1307 LPY96_05100 PF01979 Amidohydrolase family LPY96_05105 PF01979 Amidohydrolase family LPY96_05120 PF00462 Glutaredoxin LPY96_05125 PF01522 Polysaccharide deacetylase LPY96_05130 PF00593 TonB dependent receptor LPY96_05130 PF07715 TonB-dependent Receptor Plug Domain LPY96_05145 PF00155 Aminotransferase class I and II LPY96_05205 PF03193 RsgA GTPase LPY96_05220 PF00128 Alpha amylase, catalytic domain LPY96_05235 PF00356 Bacterial regulatory proteins, lacI family LPY96_05240 PF00106 short chain dehydrogenase LPY96_05245 PF03600 Citrate transporter LPY96_05255 PF00486 Transcriptional regulatory protein, C terminal LPY96_05255 PF00072 Response regulator receiver domain LPY96_05260 PF00512 His Kinase A (phospho-acceptor) domain LPY96_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_05260 PF08521 Two-component sensor kinase N-terminal LPY96_05270 PF00072 Response regulator receiver domain LPY96_05270 PF00196 Bacterial regulatory proteins, luxR family LPY96_05285 PF00248 Aldo/keto reductase family LPY96_05290 PF03466 LysR substrate binding domain LPY96_05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_05300 PF07690 Major Facilitator Superfamily LPY96_05305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_05305 PF02743 Cache domain LPY96_05305 PF00512 His Kinase A (phospho-acceptor) domain LPY96_05315 PF00375 Sodium:dicarboxylate symporter family LPY96_05320 PF00390 Malic enzyme, N-terminal domain LPY96_05320 PF01515 Phosphate acetyl/butaryl transferase LPY96_05320 PF03949 Malic enzyme, NAD binding domain LPY96_05345 PF03279 Bacterial lipid A biosynthesis acyltransferase LPY96_05350 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LPY96_05355 PF02321 Outer membrane efflux protein LPY96_05370 PF00990 Diguanylate cyclase, GGDEF domain LPY96_05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_05380 PF00330 Aconitase family (aconitate hydratase) LPY96_05385 PF00694 Aconitase C-terminal domain LPY96_05390 PF00180 Isocitrate/isopropylmalate dehydrogenase LPY96_05395 PF00682 HMGL-like LPY96_05395 PF08502 LeuA allosteric (dimerisation) domain LPY96_05400 PF00291 Pyridoxal-phosphate dependent enzyme LPY96_05410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LPY96_05410 PF00205 Thiamine pyrophosphate enzyme, central domain LPY96_05410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LPY96_05415 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LPY96_05415 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LPY96_05425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_05425 PF00672 HAMP domain LPY96_05430 PF00593 TonB dependent receptor LPY96_05430 PF07715 TonB-dependent Receptor Plug Domain LPY96_05435 PF13667 ThiC-associated domain LPY96_05435 PF01964 Radical SAM ThiC family LPY96_05440 PF00486 Transcriptional regulatory protein, C terminal LPY96_05440 PF18500 CadC C-terminal domain 1 LPY96_05445 PF12833 Helix-turn-helix domain LPY96_05450 PF07715 TonB-dependent Receptor Plug Domain LPY96_05450 PF00593 TonB dependent receptor LPY96_05460 PF00719 Inorganic pyrophosphatase LPY96_05470 PF03030 Inorganic H+ pyrophosphatase LPY96_05485 PF00365 Phosphofructokinase LPY96_05495 PF02875 Mur ligase family, glutamate ligase domain LPY96_05495 PF01225 Mur ligase family, catalytic domain LPY96_05495 PF08245 Mur ligase middle domain LPY96_05505 PF01062 Bestrophin, RFP-TM, chloride channel LPY96_05510 PF01569 PAP2 superfamily LPY96_05525 PF00520 Ion transport protein LPY96_05525 PF00027 Cyclic nucleotide-binding domain LPY96_05530 PF00202 Aminotransferase class-III LPY96_05545 PF01593 Flavin containing amine oxidoreductase LPY96_05550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LPY96_05550 PF00034 Cytochrome c LPY96_05560 PF00155 Aminotransferase class I and II LPY96_05565 PF00127 Copper binding proteins, plastocyanin/azurin family LPY96_05570 PF17874 MalT-like TPR region LPY96_05570 PF00196 Bacterial regulatory proteins, luxR family LPY96_05575 PF00202 Aminotransferase class-III LPY96_05585 PF02581 Thiamine monophosphate synthase LPY96_05590 PF00301 Rubredoxin LPY96_05595 PF13369 Transglutaminase-like superfamily LPY96_05605 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LPY96_05615 PF01812 5-formyltetrahydrofolate cyclo-ligase family LPY96_05625 PF05164 Cell division protein ZapA LPY96_05635 PF03695 Uncharacterised protein family (UPF0149) LPY96_05640 PF05195 Aminopeptidase P, N-terminal domain LPY96_05640 PF00557 Metallopeptidase family M24 LPY96_05650 PF00557 Metallopeptidase family M24 LPY96_05665 PF06969 HemN C-terminal domain LPY96_05665 PF04055 Radical SAM superfamily LPY96_05670 PF01725 Ham1 family LPY96_05680 PF01138 3' exoribonuclease family, domain 1 LPY96_05680 PF03725 3' exoribonuclease family, domain 2 LPY96_05685 PF08340 Domain of unknown function (DUF1732) LPY96_05685 PF03755 YicC-like family, N-terminal region LPY96_05690 PF00625 Guanylate kinase LPY96_05695 PF01192 RNA polymerase Rpb6 LPY96_05700 PF02824 TGS domain LPY96_05700 PF04607 Region found in RelA / SpoT proteins LPY96_05700 PF13291 ACT domain LPY96_05705 PF01042 Endoribonuclease L-PSP LPY96_05710 PF17191 RecG wedge domain LPY96_05710 PF00271 Helicase conserved C-terminal domain LPY96_05710 PF00270 DEAD/DEAH box helicase LPY96_05715 PF01156 Inosine-uridine preferring nucleoside hydrolase LPY96_05720 PF01197 Ribosomal protein L31 LPY96_05725 PF00285 Citrate synthase, C-terminal domain LPY96_05735 PF17092 Penicillin-binding protein OB-like domain LPY96_05735 PF00905 Penicillin binding protein transpeptidase domain LPY96_05735 PF00912 Transglycosylase LPY96_05740 PF11104 Type IV pilus assembly protein PilM; LPY96_05745 PF05137 Fimbrial assembly protein (PilN) LPY96_05750 PF04350 Pilus assembly protein, PilO LPY96_05755 PF04351 Pilus assembly protein, PilP LPY96_05760 PF11741 AMIN domain LPY96_05760 PF00263 Bacterial type II and III secretion system protein LPY96_05760 PF03958 Bacterial type II/III secretion system short domain LPY96_05760 PF07660 Secretin and TonB N terminus short domain LPY96_05770 PF17863 AAA lid domain LPY96_05770 PF07726 ATPase family associated with various cellular activities (AAA) LPY96_05790 PF00092 von Willebrand factor type A domain LPY96_05790 PF07584 Aerotolerance regulator N-terminal LPY96_05800 PF00375 Sodium:dicarboxylate symporter family LPY96_05805 PF02779 Transketolase, pyrimidine binding domain LPY96_05805 PF02780 Transketolase, C-terminal domain LPY96_05805 PF00456 Transketolase, thiamine diphosphate binding domain LPY96_05815 PF12146 Serine aminopeptidase, S33 LPY96_05820 PF00593 TonB dependent receptor LPY96_05820 PF07715 TonB-dependent Receptor Plug Domain LPY96_05870 PF03459 TOBE domain LPY96_05870 PF00005 ABC transporter LPY96_05875 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_05885 PF04273 Putative phosphatase (DUF442) LPY96_05885 PF00753 Metallo-beta-lactamase superfamily LPY96_05895 PF03922 OmpW family LPY96_05900 PF03922 OmpW family LPY96_05910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LPY96_05910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LPY96_05930 PF00162 Phosphoglycerate kinase LPY96_05945 PF00224 Pyruvate kinase, barrel domain LPY96_05945 PF02887 Pyruvate kinase, alpha/beta domain LPY96_05950 PF00274 Fructose-bisphosphate aldolase class-I LPY96_05955 PF01661 Macro domain LPY96_05965 PF00291 Pyridoxal-phosphate dependent enzyme LPY96_05970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPY96_05970 PF10414 Sirohaem synthase dimerisation region LPY96_05970 PF14824 Sirohaem biosynthesis protein central LPY96_05975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_05975 PF03466 LysR substrate binding domain LPY96_05985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_05985 PF00512 His Kinase A (phospho-acceptor) domain LPY96_05985 PF01627 Hpt domain LPY96_05985 PF00072 Response regulator receiver domain LPY96_06005 PF01507 Phosphoadenosine phosphosulfate reductase family LPY96_06010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LPY96_06010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LPY96_06015 PF00258 Flavodoxin LPY96_06015 PF00667 FAD binding domain LPY96_06015 PF00175 Oxidoreductase NAD-binding domain LPY96_06020 PF01507 Phosphoadenosine phosphosulfate reductase family LPY96_06025 PF00009 Elongation factor Tu GTP binding domain LPY96_06030 PF00529 HlyD membrane-fusion protein of T1SS LPY96_06030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_06035 PF00873 AcrB/AcrD/AcrF family LPY96_06060 PF11838 ERAP1-like C-terminal domain LPY96_06060 PF01433 Peptidase family M1 domain LPY96_06070 PF00588 SpoU rRNA Methylase family LPY96_06070 PF08032 RNA 2'-O ribose methyltransferase substrate binding LPY96_06075 PF00135 Carboxylesterase family LPY96_06085 PF10566 Glycoside hydrolase 97 LPY96_06085 PF14508 Glycosyl-hydrolase 97 N-terminal LPY96_06085 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation LPY96_06090 PF00703 Glycosyl hydrolases family 2 LPY96_06090 PF02837 Glycosyl hydrolases family 2, sugar binding domain LPY96_06090 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain LPY96_06100 PF00356 Bacterial regulatory proteins, lacI family LPY96_06110 PF01741 Large-conductance mechanosensitive channel, MscL LPY96_06115 PF01557 Fumarylacetoacetate (FAA) hydrolase family LPY96_06130 PF02080 TrkA-C domain LPY96_06130 PF03600 Citrate transporter LPY96_06135 PF02390 Putative methyltransferase LPY96_06140 PF05690 Thiazole biosynthesis protein ThiG LPY96_06150 PF03797 Autotransporter beta-domain LPY96_06150 PF00657 GDSL-like Lipase/Acylhydrolase LPY96_06180 PF00665 Integrase core domain LPY96_06180 PF02796 Helix-turn-helix domain of resolvase LPY96_06200 PF17841 BID domain of Bartonella effector protein (Bep) LPY96_06200 PF03389 MobA/MobL family LPY96_06200 PF01443 Viral (Superfamily 1) RNA helicase LPY96_06245 PF00128 Alpha amylase, catalytic domain LPY96_06245 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LPY96_06250 PF08443 RimK-like ATP-grasp domain LPY96_06250 PF18030 RimK PreATP-grasp domain LPY96_06260 PF00072 Response regulator receiver domain LPY96_06260 PF00486 Transcriptional regulatory protein, C terminal LPY96_06265 PF16736 Single Cache-like LPY96_06265 PF00512 His Kinase A (phospho-acceptor) domain LPY96_06265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_06265 PF00989 PAS fold LPY96_06300 PF01121 Dephospho-CoA kinase LPY96_06305 PF06750 Bacterial Peptidase A24 N-terminal domain LPY96_06305 PF01478 Type IV leader peptidase family LPY96_06310 PF00482 Type II secretion system (T2SS), protein F LPY96_06335 PF00437 Type II/IV secretion system protein LPY96_06335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPY96_06340 PF00437 Type II/IV secretion system protein LPY96_06340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPY96_06345 PF00072 Response regulator receiver domain LPY96_06345 PF00158 Sigma-54 interaction domain LPY96_06345 PF02954 Bacterial regulatory protein, Fis family LPY96_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_06350 PF00512 His Kinase A (phospho-acceptor) domain LPY96_06355 PF00549 CoA-ligase LPY96_06355 PF08442 ATP-grasp domain LPY96_06360 PF00549 CoA-ligase LPY96_06360 PF02629 CoA binding domain LPY96_06375 PF00795 Carbon-nitrogen hydrolase LPY96_06375 PF02540 NAD synthase LPY96_06385 PF13525 Outer membrane lipoprotein LPY96_06390 PF00849 RNA pseudouridylate synthase LPY96_06395 PF02578 Multi-copper polyphenol oxidoreductase laccase LPY96_06410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_06410 PF02203 Tar ligand binding domain homologue LPY96_06410 PF00672 HAMP domain LPY96_06415 PF01011 PQQ enzyme repeat LPY96_06420 PF00982 Glycosyltransferase family 20 LPY96_06425 PF00723 Glycosyl hydrolases family 15 LPY96_06430 PF02358 Trehalose-phosphatase LPY96_06435 PF07715 TonB-dependent Receptor Plug Domain LPY96_06435 PF00593 TonB dependent receptor LPY96_06470 PF01541 GIY-YIG catalytic domain LPY96_06475 PF00593 TonB dependent receptor LPY96_06475 PF07715 TonB-dependent Receptor Plug Domain LPY96_06485 PF00248 Aldo/keto reductase family LPY96_06490 PF09084 NMT1/THI5 like LPY96_06495 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_06500 PF00005 ABC transporter LPY96_06505 PF10431 C-terminal, D2-small domain, of ClpB protein LPY96_06505 PF02861 Clp amino terminal domain, pathogenicity island component LPY96_06505 PF17871 AAA lid domain LPY96_06505 PF07724 AAA domain (Cdc48 subfamily) LPY96_06505 PF00004 ATPase family associated with various cellular activities (AAA) LPY96_06510 PF00593 TonB dependent receptor LPY96_06510 PF07715 TonB-dependent Receptor Plug Domain LPY96_06525 PF12557 Cob(I)alamin adenosyltransferase N terminal LPY96_06525 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LPY96_06530 PF03186 CobD/Cbib protein LPY96_06530 PF17113 Regulatory signalling modulator protein AmpE LPY96_06535 PF00155 Aminotransferase class I and II LPY96_06540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LPY96_06540 PF07685 CobB/CobQ-like glutamine amidotransferase domain LPY96_06545 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LPY96_06550 PF02277 Phosphoribosyltransferase LPY96_06560 PF02654 Cobalamin-5-phosphate synthase LPY96_06575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LPY96_06575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LPY96_06585 PF07690 Major Facilitator Superfamily LPY96_06590 PF06276 Ferric iron reductase FhuF-like transporter LPY96_06590 PF04183 IucA / IucC family LPY96_06600 PF00593 TonB dependent receptor LPY96_06600 PF07660 Secretin and TonB N terminus short domain LPY96_06600 PF07715 TonB-dependent Receptor Plug Domain LPY96_06625 PF02254 TrkA-N domain LPY96_06625 PF00999 Sodium/hydrogen exchanger family LPY96_06635 PF07715 TonB-dependent Receptor Plug Domain LPY96_06635 PF00593 TonB dependent receptor LPY96_06650 PF00593 TonB dependent receptor LPY96_06650 PF07715 TonB-dependent Receptor Plug Domain LPY96_06665 PF03466 LysR substrate binding domain LPY96_06665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_06695 PF07690 Major Facilitator Superfamily LPY96_06710 PF02938 GAD domain LPY96_06710 PF00152 tRNA synthetases class II (D, K and N) LPY96_06710 PF01336 OB-fold nucleic acid binding domain LPY96_06725 PF01709 Transcriptional regulator LPY96_06730 PF02075 Crossover junction endodeoxyribonuclease RuvC LPY96_06735 PF07499 RuvA, C-terminal domain LPY96_06735 PF01330 RuvA N terminal domain LPY96_06740 PF02705 K+ potassium transporter LPY96_06750 PF17864 RuvB AAA lid domain LPY96_06750 PF05496 Holliday junction DNA helicase RuvB P-loop domain LPY96_06750 PF05491 RuvB C-terminal winged helix domain LPY96_06755 PF03061 Thioesterase superfamily LPY96_06760 PF01618 MotA/TolQ/ExbB proton channel family LPY96_06765 PF02472 Biopolymer transport protein ExbD/TolR LPY96_06775 PF04052 TolB amino-terminal domain LPY96_06775 PF07676 WD40-like Beta Propeller Repeat LPY96_06780 PF00691 OmpA family LPY96_06790 PF04055 Radical SAM superfamily LPY96_06800 PF06508 Queuosine biosynthesis protein QueC LPY96_06805 PF13581 Histidine kinase-like ATPase domain LPY96_06805 PF07536 HWE histidine kinase LPY96_06805 PF13426 PAS domain LPY96_06815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_06815 PF03466 LysR substrate binding domain LPY96_06820 PF01810 LysE type translocator LPY96_06825 PF00672 HAMP domain LPY96_06825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_06825 PF02203 Tar ligand binding domain homologue LPY96_06855 PF00270 DEAD/DEAH box helicase LPY96_06855 PF09382 RQC domain LPY96_06855 PF00271 Helicase conserved C-terminal domain LPY96_06855 PF00570 HRDC domain LPY96_06855 PF16124 RecQ zinc-binding LPY96_06860 PF00210 Ferritin-like domain LPY96_06865 PF00270 DEAD/DEAH box helicase LPY96_06865 PF11898 Domain of unknown function (DUF3418) LPY96_06865 PF04408 Helicase associated domain (HA2) LPY96_06865 PF00271 Helicase conserved C-terminal domain LPY96_06865 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LPY96_06880 PF02685 Glucokinase LPY96_06895 PF04055 Radical SAM superfamily LPY96_06895 PF13186 Iron-sulfur cluster-binding domain LPY96_06900 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LPY96_06905 PF03070 TENA/THI-4/PQQC family LPY96_06910 PF12706 Beta-lactamase superfamily domain LPY96_06915 PF08042 PqqA family LPY96_06920 PF02824 TGS domain LPY96_06920 PF13291 ACT domain LPY96_06920 PF04607 Region found in RelA / SpoT proteins LPY96_06930 PF00535 Glycosyl transferase family 2 LPY96_06935 PF00912 Transglycosylase LPY96_06935 PF00905 Penicillin binding protein transpeptidase domain LPY96_06935 PF14814 Bifunctional transglycosylase second domain LPY96_06945 PF13307 Helicase C-terminal domain LPY96_06945 PF04851 Type III restriction enzyme, res subunit LPY96_06950 PF00814 Glycoprotease family LPY96_06955 PF03747 ADP-ribosylglycohydrolase LPY96_06965 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LPY96_06965 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LPY96_06970 PF00072 Response regulator receiver domain LPY96_06975 PF00072 Response regulator receiver domain LPY96_06980 PF01584 CheW-like domain LPY96_06985 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LPY96_06985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_06990 PF01627 Hpt domain LPY96_06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_06990 PF01584 CheW-like domain LPY96_06990 PF00072 Response regulator receiver domain LPY96_07005 PF13302 Acetyltransferase (GNAT) domain LPY96_07010 PF01112 Asparaginase LPY96_07015 PF03932 CutC family LPY96_07045 PF01301 Glycosyl hydrolases family 35 LPY96_07050 PF07971 Glycosyl hydrolase family 92 LPY96_07050 PF17678 Glycosyl hydrolase family 92 N-terminal domain LPY96_07090 PF00664 ABC transporter transmembrane region LPY96_07090 PF03412 Peptidase C39 family LPY96_07090 PF00005 ABC transporter LPY96_07095 PF00933 Glycosyl hydrolase family 3 N terminal domain LPY96_07095 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPY96_07095 PF07691 PA14 domain LPY96_07095 PF14310 Fibronectin type III-like domain LPY96_07105 PF00728 Glycosyl hydrolase family 20, catalytic domain LPY96_07105 PF02838 Glycosyl hydrolase family 20, domain 2 LPY96_07105 PF07691 PA14 domain LPY96_07110 PF00704 Glycosyl hydrolases family 18 LPY96_07110 PF01476 LysM domain LPY96_07125 PF02685 Glucokinase LPY96_07130 PF04452 RNA methyltransferase LPY96_07135 PF00202 Aminotransferase class-III LPY96_07140 PF00293 NUDIX domain LPY96_07145 PF00459 Inositol monophosphatase family LPY96_07150 PF03819 MazG nucleotide pyrophosphohydrolase domain LPY96_07155 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LPY96_07175 PF08669 Glycine cleavage T-protein C-terminal barrel domain LPY96_07175 PF01571 Aminomethyltransferase folate-binding domain LPY96_07180 PF01597 Glycine cleavage H-protein LPY96_07210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_07210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_07210 PF09317 Domain of unknown function (DUF1974) LPY96_07215 PF00561 alpha/beta hydrolase fold LPY96_07220 PF00440 Bacterial regulatory proteins, tetR family LPY96_07250 PF07715 TonB-dependent Receptor Plug Domain LPY96_07250 PF00593 TonB dependent receptor LPY96_07260 PF01430 Hsp33 protein LPY96_07265 PF00912 Transglycosylase LPY96_07270 PF00535 Glycosyl transferase family 2 LPY96_07275 PF00571 CBS domain LPY96_07275 PF00478 IMP dehydrogenase / GMP reductase domain LPY96_07280 PF05170 AsmA family LPY96_07285 PF03006 Haemolysin-III related LPY96_07290 PF16658 Class II release factor RF3, C-terminal domain LPY96_07290 PF00009 Elongation factor Tu GTP binding domain LPY96_07295 PF08525 Opacity-associated protein A N-terminal motif LPY96_07295 PF01476 LysM domain LPY96_07295 PF01551 Peptidase family M23 LPY96_07300 PF00561 alpha/beta hydrolase fold LPY96_07305 PF01053 Cys/Met metabolism PLP-dependent enzyme LPY96_07310 PF00696 Amino acid kinase family LPY96_07310 PF03447 Homoserine dehydrogenase, NAD binding domain LPY96_07310 PF00742 Homoserine dehydrogenase LPY96_07320 PF03315 Serine dehydratase beta chain LPY96_07320 PF03313 Serine dehydratase alpha chain LPY96_07340 PF04264 YceI-like domain LPY96_07345 PF01627 Hpt domain LPY96_07345 PF00512 His Kinase A (phospho-acceptor) domain LPY96_07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_07345 PF00072 Response regulator receiver domain LPY96_07350 PF00989 PAS fold LPY96_07350 PF00512 His Kinase A (phospho-acceptor) domain LPY96_07350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_07350 PF18415 Histidine kinase receptor ArcB trans-membrane domain LPY96_07350 PF01627 Hpt domain LPY96_07350 PF00072 Response regulator receiver domain LPY96_07355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_07355 PF00072 Response regulator receiver domain LPY96_07355 PF01627 Hpt domain LPY96_07355 PF00512 His Kinase A (phospho-acceptor) domain LPY96_07355 PF17149 Periplasmic sensor domain found in signal transduction proteins LPY96_07355 PF00672 HAMP domain LPY96_07360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_07360 PF00512 His Kinase A (phospho-acceptor) domain LPY96_07360 PF01627 Hpt domain LPY96_07360 PF00072 Response regulator receiver domain LPY96_07360 PF17149 Periplasmic sensor domain found in signal transduction proteins LPY96_07360 PF00672 HAMP domain LPY96_07370 PF01208 Uroporphyrinogen decarboxylase (URO-D) LPY96_07380 PF01761 3-dehydroquinate synthase LPY96_07385 PF01202 Shikimate kinase LPY96_07390 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LPY96_07390 PF01243 Pyridoxamine 5'-phosphate oxidase LPY96_07400 PF04012 PspA/IM30 family LPY96_07425 PF03738 Glutathionylspermidine synthase preATP-grasp LPY96_07450 PF00376 MerR family regulatory protein LPY96_07450 PF09278 MerR, DNA binding LPY96_07485 PF04820 Tryptophan halogenase LPY96_07490 PF12706 Beta-lactamase superfamily domain LPY96_07510 PF00324 Amino acid permease LPY96_07520 PF00196 Bacterial regulatory proteins, luxR family LPY96_07530 PF00561 alpha/beta hydrolase fold LPY96_07550 PF00324 Amino acid permease LPY96_07560 PF01654 Cytochrome bd terminal oxidase subunit I LPY96_07565 PF02322 Cytochrome bd terminal oxidase subunit II LPY96_07575 PF00756 Putative esterase LPY96_07580 PF00571 CBS domain LPY96_07580 PF03448 MgtE intracellular N domain LPY96_07580 PF01769 Divalent cation transporter LPY96_07585 PF05524 PEP-utilising enzyme, N-terminal LPY96_07585 PF02896 PEP-utilising enzyme, TIM barrel domain LPY96_07585 PF00391 PEP-utilising enzyme, mobile domain LPY96_07590 PF00381 PTS HPr component phosphorylation site LPY96_07600 PF03668 P-loop ATPase protein family LPY96_07605 PF07475 HPr Serine kinase C-terminal domain LPY96_07605 PF02603 HPr Serine kinase N terminus LPY96_07610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LPY96_07615 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LPY96_07620 PF04552 Sigma-54, DNA binding domain LPY96_07620 PF00309 Sigma-54 factor, Activator interacting domain (AID) LPY96_07620 PF04963 Sigma-54 factor, core binding domain LPY96_07625 PF00005 ABC transporter LPY96_07630 PF03968 OstA-like protein LPY96_07645 PF00571 CBS domain LPY96_07645 PF01380 SIS domain LPY96_07650 PF01722 BolA-like protein LPY96_07655 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPY96_07675 PF00551 Formyl transferase LPY96_07690 PF00586 AIR synthase related protein, N-terminal domain LPY96_07690 PF02769 AIR synthase related protein, C-terminal domain LPY96_07700 PF01594 AI-2E family transporter LPY96_07705 PF00308 Bacterial dnaA protein LPY96_07710 PF00483 Nucleotidyl transferase LPY96_07715 PF01636 Phosphotransferase enzyme family LPY96_07750 PF02424 ApbE family LPY96_07775 PF18331 PKHD-type hydroxylase C-terminal domain LPY96_07775 PF13640 2OG-Fe(II) oxygenase superfamily LPY96_07780 PF00593 TonB dependent receptor LPY96_07780 PF07715 TonB-dependent Receptor Plug Domain LPY96_07785 PF00355 Rieske [2Fe-2S] domain LPY96_07795 PF00266 Aminotransferase class-V LPY96_07800 PF01458 Uncharacterized protein family (UPF0051) LPY96_07805 PF00005 ABC transporter LPY96_07810 PF01458 Uncharacterized protein family (UPF0051) LPY96_07815 PF02082 Transcriptional regulator LPY96_07825 PF01965 DJ-1/PfpI family LPY96_07845 PF01551 Peptidase family M23 LPY96_07855 PF14748 Pyrroline-5-carboxylate reductase dimerisation LPY96_07855 PF03807 NADP oxidoreductase coenzyme F420-dependent LPY96_07860 PF01168 Alanine racemase, N-terminal domain LPY96_07865 PF00437 Type II/IV secretion system protein LPY96_07870 PF00437 Type II/IV secretion system protein LPY96_07885 PF00117 Glutamine amidotransferase class-I LPY96_07885 PF03352 Methyladenine glycosylase LPY96_07885 PF13302 Acetyltransferase (GNAT) domain LPY96_07885 PF13673 Acetyltransferase (GNAT) domain LPY96_07885 PF00958 GMP synthase C terminal domain LPY96_07890 PF02622 Uncharacterized ACR, COG1678 LPY96_07895 PF03652 Holliday junction resolvase LPY96_07900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPY96_07900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPY96_07905 PF02566 OsmC-like protein LPY96_07915 PF02567 Phenazine biosynthesis-like protein LPY96_07920 PF02567 Phenazine biosynthesis-like protein LPY96_07925 PF00696 Amino acid kinase family LPY96_07925 PF01842 ACT domain LPY96_07940 PF08245 Mur ligase middle domain LPY96_07940 PF02875 Mur ligase family, glutamate ligase domain LPY96_07955 PF00348 Polyprenyl synthetase LPY96_07960 PF00436 Single-strand binding protein family LPY96_07965 PF01590 GAF domain LPY96_07965 PF00360 Phytochrome region LPY96_07965 PF00990 Diguanylate cyclase, GGDEF domain LPY96_07965 PF00563 EAL domain LPY96_07970 PF02801 Beta-ketoacyl synthase, C-terminal domain LPY96_07970 PF00109 Beta-ketoacyl synthase, N-terminal domain LPY96_07970 PF16197 Ketoacyl-synthetase C-terminal extension LPY96_07970 PF00107 Zinc-binding dehydrogenase LPY96_07970 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_07970 PF00698 Acyl transferase domain LPY96_07970 PF08659 KR domain LPY96_07970 PF00550 Phosphopantetheine attachment site LPY96_07970 PF14765 Polyketide synthase dehydratase LPY96_07975 PF00111 2Fe-2S iron-sulfur cluster binding domain LPY96_07975 PF01799 [2Fe-2S] binding domain LPY96_07975 PF10518 TAT (twin-arginine translocation) pathway signal sequence LPY96_07980 PF00941 FAD binding domain in molybdopterin dehydrogenase LPY96_07980 PF03450 CO dehydrogenase flavoprotein C-terminal domain LPY96_07985 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LPY96_07985 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LPY96_07990 PF02625 XdhC and CoxI family LPY96_07990 PF13478 XdhC Rossmann domain LPY96_08025 PF04328 Selenoprotein, putative LPY96_08030 PF13722 5TM C-terminal transporter carbon starvation CstA LPY96_08030 PF02554 Carbon starvation protein CstA LPY96_08035 PF02678 Pirin LPY96_08035 PF05726 Pirin C-terminal cupin domain LPY96_08050 PF02678 Pirin LPY96_08050 PF05726 Pirin C-terminal cupin domain LPY96_08060 PF04493 Endonuclease V LPY96_08065 PF00300 Histidine phosphatase superfamily (branch 1) LPY96_08080 PF13091 PLD-like domain LPY96_08085 PF01339 CheB methylesterase LPY96_08085 PF00072 Response regulator receiver domain LPY96_08090 PF01739 CheR methyltransferase, SAM binding domain LPY96_08090 PF03705 CheR methyltransferase, all-alpha domain LPY96_08095 PF13426 PAS domain LPY96_08095 PF00563 EAL domain LPY96_08095 PF00990 Diguanylate cyclase, GGDEF domain LPY96_08100 PF01584 CheW-like domain LPY96_08105 PF00672 HAMP domain LPY96_08105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_08105 PF02203 Tar ligand binding domain homologue LPY96_08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_08110 PF01584 CheW-like domain LPY96_08110 PF09078 CheY binding LPY96_08110 PF01627 Hpt domain LPY96_08110 PF02895 Signal transducing histidine kinase, homodimeric domain LPY96_08140 PF17757 UvrB interaction domain LPY96_08140 PF03461 TRCF domain LPY96_08140 PF00270 DEAD/DEAH box helicase LPY96_08140 PF02559 CarD-like/TRCF domain LPY96_08140 PF00271 Helicase conserved C-terminal domain LPY96_08150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LPY96_08155 PF00072 Response regulator receiver domain LPY96_08155 PF00486 Transcriptional regulatory protein, C terminal LPY96_08160 PF00672 HAMP domain LPY96_08160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_08160 PF00512 His Kinase A (phospho-acceptor) domain LPY96_08175 PF06123 Inner membrane protein CreD LPY96_08200 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPY96_08205 PF01475 Ferric uptake regulator family LPY96_08215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_08215 PF00529 HlyD membrane-fusion protein of T1SS LPY96_08220 PF00873 AcrB/AcrD/AcrF family LPY96_08225 PF02321 Outer membrane efflux protein LPY96_08230 PF16859 Tetracyclin repressor-like, C-terminal domain LPY96_08230 PF00440 Bacterial regulatory proteins, tetR family LPY96_08235 PF00248 Aldo/keto reductase family LPY96_08240 PF03466 LysR substrate binding domain LPY96_08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_08250 PF06719 AraC-type transcriptional regulator N-terminus LPY96_08250 PF12833 Helix-turn-helix domain LPY96_08265 PF07690 Major Facilitator Superfamily LPY96_08280 PF01483 Proprotein convertase P-domain LPY96_08280 PF00082 Subtilase family LPY96_08300 PF07715 TonB-dependent Receptor Plug Domain LPY96_08300 PF00593 TonB dependent receptor LPY96_08320 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_08320 PF00107 Zinc-binding dehydrogenase LPY96_08325 PF00654 Voltage gated chloride channel LPY96_08335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LPY96_08335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LPY96_08385 PF03880 DbpA RNA binding domain LPY96_08385 PF00270 DEAD/DEAH box helicase LPY96_08385 PF00271 Helicase conserved C-terminal domain LPY96_08390 PF00563 EAL domain LPY96_08390 PF00990 Diguanylate cyclase, GGDEF domain LPY96_08390 PF08448 PAS fold LPY96_08395 PF01479 S4 domain LPY96_08395 PF00849 RNA pseudouridylate synthase LPY96_08400 PF00990 Diguanylate cyclase, GGDEF domain LPY96_08415 PF03737 Aldolase/RraA LPY96_08420 PF00144 Beta-lactamase LPY96_08425 PF00999 Sodium/hydrogen exchanger family LPY96_08435 PF00072 Response regulator receiver domain LPY96_08435 PF00486 Transcriptional regulatory protein, C terminal LPY96_08440 PF02321 Outer membrane efflux protein LPY96_08455 PF00873 AcrB/AcrD/AcrF family LPY96_08470 PF00664 ABC transporter transmembrane region LPY96_08470 PF00005 ABC transporter LPY96_08500 PF03466 LysR substrate binding domain LPY96_08500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_08510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LPY96_08515 PF04070 Domain of unknown function (DUF378) LPY96_08545 PF00085 Thioredoxin LPY96_08555 PF08264 Anticodon-binding domain of tRNA LPY96_08555 PF00133 tRNA synthetases class I (I, L, M and V) LPY96_08555 PF13603 Leucyl-tRNA synthetase, Domain 2 LPY96_08570 PF01467 Cytidylyltransferase-like LPY96_08585 PF02590 Predicted SPOUT methyltransferase LPY96_08600 PF04402 Protein of unknown function (DUF541) LPY96_08605 PF02545 Maf-like protein LPY96_08610 PF10150 Ribonuclease E/G family LPY96_08610 PF00575 S1 RNA binding domain LPY96_08615 PF13502 AsmA-like C-terminal region LPY96_08615 PF13116 Protein of unknown function LPY96_08625 PF01523 Putative modulator of DNA gyrase LPY96_08630 PF04751 Protein of unknown function (DUF615) LPY96_08635 PF01523 Putative modulator of DNA gyrase LPY96_08645 PF14521 Lysine-specific metallo-endopeptidase LPY96_08650 PF00348 Polyprenyl synthetase LPY96_08655 PF02609 Exonuclease VII small subunit LPY96_08660 PF11734 TilS substrate C-terminal domain LPY96_08660 PF09179 TilS substrate binding domain LPY96_08660 PF01171 PP-loop family LPY96_08665 PF00245 Alkaline phosphatase LPY96_08670 PF00375 Sodium:dicarboxylate symporter family LPY96_08685 PF00877 NlpC/P60 family LPY96_08690 PF00877 NlpC/P60 family LPY96_08695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPY96_08700 PF04235 Protein of unknown function (DUF418) LPY96_08705 PF01266 FAD dependent oxidoreductase LPY96_08710 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_08710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPY96_08715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LPY96_08730 PF05649 Peptidase family M13 LPY96_08730 PF01431 Peptidase family M13 LPY96_08735 PF01431 Peptidase family M13 LPY96_08735 PF05649 Peptidase family M13 LPY96_08750 PF07715 TonB-dependent Receptor Plug Domain LPY96_08750 PF00593 TonB dependent receptor LPY96_08755 PF10609 NUBPL iron-transfer P-loop NTPase LPY96_08760 PF00692 dUTPase LPY96_08800 PF00082 Subtilase family LPY96_08805 PF06480 FtsH Extracellular LPY96_08805 PF00004 ATPase family associated with various cellular activities (AAA) LPY96_08805 PF17862 AAA+ lid domain LPY96_08805 PF01434 Peptidase family M41 LPY96_08815 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LPY96_08825 PF04055 Radical SAM superfamily LPY96_08825 PF18693 TRAM domain LPY96_08825 PF00919 Uncharacterized protein family UPF0004 LPY96_08830 PF03449 Transcription elongation factor, N-terminal LPY96_08830 PF01272 Transcription elongation factor, GreA/GreB, C-term LPY96_08845 PF00293 NUDIX domain LPY96_08850 PF05872 Bacterial protein of unknown function (DUF853) LPY96_08865 PF02666 Phosphatidylserine decarboxylase LPY96_08870 PF02630 SCO1/SenC LPY96_08875 PF05175 Methyltransferase small domain LPY96_08880 PF01264 Chorismate synthase LPY96_08885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LPY96_08885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LPY96_08890 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPY96_08890 PF02774 Semialdehyde dehydrogenase, dimerisation domain LPY96_08910 PF01416 tRNA pseudouridine synthase LPY96_08915 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LPY96_08920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_08920 PF03466 LysR substrate binding domain LPY96_08925 PF00291 Pyridoxal-phosphate dependent enzyme LPY96_08935 PF00290 Tryptophan synthase alpha chain LPY96_08940 PF17848 Acetyl-coA carboxylase zinc finger domain LPY96_08940 PF01039 Carboxyl transferase domain LPY96_08945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPY96_08945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPY96_08945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPY96_08945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPY96_08960 PF00563 EAL domain LPY96_08960 PF00990 Diguanylate cyclase, GGDEF domain LPY96_08960 PF03707 Bacterial signalling protein N terminal repeat LPY96_08975 PF00106 short chain dehydrogenase LPY96_08980 PF00121 Triosephosphate isomerase LPY96_08995 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LPY96_09000 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LPY96_09005 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LPY96_09010 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LPY96_09020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LPY96_09020 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LPY96_09020 PF10531 SLBB domain LPY96_09025 PF00384 Molybdopterin oxidoreductase LPY96_09025 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LPY96_09025 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LPY96_09030 PF00146 NADH dehydrogenase LPY96_09035 PF12838 4Fe-4S dicluster domain LPY96_09040 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LPY96_09045 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LPY96_09050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LPY96_09050 PF00361 Proton-conducting membrane transporter LPY96_09055 PF00361 Proton-conducting membrane transporter LPY96_09055 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LPY96_09060 PF00361 Proton-conducting membrane transporter LPY96_09070 PF02576 RimP N-terminal domain LPY96_09070 PF17384 RimP C-terminal SH3 domain LPY96_09075 PF13184 NusA-like KH domain LPY96_09075 PF08529 NusA N-terminal domain LPY96_09075 PF00575 S1 RNA binding domain LPY96_09080 PF00009 Elongation factor Tu GTP binding domain LPY96_09080 PF11987 Translation-initiation factor 2 LPY96_09080 PF08364 Bacterial translation initiation factor IF-2 associated region LPY96_09080 PF04760 Translation initiation factor IF-2, N-terminal region LPY96_09085 PF02033 Ribosome-binding factor A LPY96_09090 PF09157 Pseudouridine synthase II TruB, C-terminal LPY96_09090 PF16198 tRNA pseudouridylate synthase B C-terminal domain LPY96_09090 PF01509 TruB family pseudouridylate synthase (N terminal domain) LPY96_09095 PF00312 Ribosomal protein S15 LPY96_09100 PF00575 S1 RNA binding domain LPY96_09100 PF03725 3' exoribonuclease family, domain 2 LPY96_09100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LPY96_09100 PF01138 3' exoribonuclease family, domain 1 LPY96_09100 PF00013 KH domain LPY96_09110 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LPY96_09110 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LPY96_09120 PF00731 AIR carboxylase LPY96_09125 PF02222 ATP-grasp domain LPY96_09125 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LPY96_09130 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPY96_09130 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPY96_09135 PF00462 Glutaredoxin LPY96_09145 PF01914 MarC family integral membrane protein LPY96_09150 PF00593 TonB dependent receptor LPY96_09155 PF03641 Possible lysine decarboxylase LPY96_09155 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LPY96_09155 PF11892 Domain of unknown function (DUF3412) LPY96_09160 PF07963 Prokaryotic N-terminal methylation motif LPY96_09160 PF00114 Pilin (bacterial filament) LPY96_09180 PF05567 Neisseria PilC beta-propeller domain LPY96_09215 PF02534 Type IV secretory system Conjugative DNA transfer LPY96_09235 PF03743 Bacterial conjugation TrbI-like protein LPY96_09240 PF00437 Type II/IV secretion system protein LPY96_09245 PF01464 Transglycosylase SLT domain LPY96_09255 PF05101 Type IV secretory pathway, VirB3-like protein LPY96_09260 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPY96_09325 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation LPY96_09325 PF14508 Glycosyl-hydrolase 97 N-terminal LPY96_09325 PF10566 Glycoside hydrolase 97 LPY96_09335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LPY96_09340 PF00128 Alpha amylase, catalytic domain LPY96_09340 PF00686 Starch binding domain LPY96_09345 PF00356 Bacterial regulatory proteins, lacI family LPY96_09350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPY96_09350 PF03129 Anticodon binding domain LPY96_09350 PF02824 TGS domain LPY96_09350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPY96_09355 PF05198 Translation initiation factor IF-3, N-terminal domain LPY96_09355 PF00707 Translation initiation factor IF-3, C-terminal domain LPY96_09360 PF01632 Ribosomal protein L35 LPY96_09365 PF00453 Ribosomal protein L20 LPY96_09370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LPY96_09370 PF01409 tRNA synthetases class II core domain (F) LPY96_09375 PF01588 Putative tRNA binding domain LPY96_09375 PF03147 Ferredoxin-fold anticodon binding domain LPY96_09375 PF03483 B3/4 domain LPY96_09375 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LPY96_09375 PF03484 tRNA synthetase B5 domain LPY96_09380 PF00216 Bacterial DNA-binding protein LPY96_09385 PF13411 MerR HTH family regulatory protein LPY96_09405 PF02397 Bacterial sugar transferase LPY96_09425 PF00534 Glycosyl transferases group 1 LPY96_09425 PF13439 Glycosyltransferase Family 4 LPY96_09435 PF14667 Polysaccharide biosynthesis C-terminal domain LPY96_09450 PF03808 Glycosyl transferase WecB/TagA/CpsF family LPY96_09465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPY96_09465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPY96_09470 PF00753 Metallo-beta-lactamase superfamily LPY96_09470 PF16123 Hydroxyacylglutathione hydrolase C-terminus LPY96_09475 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LPY96_09495 PF02779 Transketolase, pyrimidine binding domain LPY96_09495 PF02780 Transketolase, C-terminal domain LPY96_09495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LPY96_09505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_09505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_09505 PF12806 Acetyl-CoA dehydrogenase C-terminal like LPY96_09505 PF02770 Acyl-CoA dehydrogenase, middle domain LPY96_09520 PF08212 Lipocalin-like domain LPY96_09550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_09550 PF13426 PAS domain LPY96_09550 PF00072 Response regulator receiver domain LPY96_09555 PF04362 Bacterial Fe(2+) trafficking LPY96_09560 PF00730 HhH-GPD superfamily base excision DNA repair protein LPY96_09560 PF14815 NUDIX domain LPY96_09560 PF10576 Iron-sulfur binding domain of endonuclease III LPY96_09560 PF00633 Helix-hairpin-helix motif LPY96_09565 PF02881 SRP54-type protein, helical bundle domain LPY96_09565 PF00448 SRP54-type protein, GTPase domain LPY96_09575 PF05544 Proline racemase LPY96_09580 PF01266 FAD dependent oxidoreductase LPY96_09590 PF04324 BFD-like [2Fe-2S] binding domain LPY96_09590 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_09595 PF00701 Dihydrodipicolinate synthetase family LPY96_09600 PF00171 Aldehyde dehydrogenase family LPY96_09605 PF00557 Metallopeptidase family M24 LPY96_09605 PF01321 Creatinase/Prolidase N-terminal domain LPY96_09620 PF13520 Amino acid permease LPY96_09645 PF09286 Pro-kumamolisin, activation domain LPY96_09645 PF00082 Subtilase family LPY96_09655 PF07715 TonB-dependent Receptor Plug Domain LPY96_09655 PF00593 TonB dependent receptor LPY96_09660 PF07532 Bacterial Ig-like domain (group 4) LPY96_09665 PF04616 Glycosyl hydrolases family 43 LPY96_09675 PF07715 TonB-dependent Receptor Plug Domain LPY96_09675 PF00593 TonB dependent receptor LPY96_09715 PF00183 Hsp90 protein LPY96_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_09725 PF01467 Cytidylyltransferase-like LPY96_09735 PF00037 4Fe-4S binding domain LPY96_09745 PF00759 Glycosyl hydrolase family 9 LPY96_09745 PF02927 Cellulase N-terminal ig-like domain LPY96_09795 PF02547 Queuosine biosynthesis protein LPY96_09800 PF01702 Queuine tRNA-ribosyltransferase LPY96_09805 PF02699 Preprotein translocase subunit LPY96_09810 PF07549 SecD/SecF GG Motif LPY96_09810 PF13721 SecD export protein N-terminal TM region LPY96_09810 PF02355 Protein export membrane protein LPY96_09815 PF02355 Protein export membrane protein LPY96_09815 PF07549 SecD/SecF GG Motif LPY96_09860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LPY96_09865 PF00294 pfkB family carbohydrate kinase LPY96_09870 PF05524 PEP-utilising enzyme, N-terminal LPY96_09870 PF00391 PEP-utilising enzyme, mobile domain LPY96_09870 PF02896 PEP-utilising enzyme, TIM barrel domain LPY96_09870 PF00381 PTS HPr component phosphorylation site LPY96_09870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LPY96_09875 PF00356 Bacterial regulatory proteins, lacI family LPY96_09880 PF00873 AcrB/AcrD/AcrF family LPY96_09885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_09885 PF00529 HlyD membrane-fusion protein of T1SS LPY96_09895 PF05088 Bacterial NAD-glutamate dehydrogenase LPY96_09905 PF07690 Major Facilitator Superfamily LPY96_09910 PF00072 Response regulator receiver domain LPY96_09915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPY96_09915 PF00072 Response regulator receiver domain LPY96_09915 PF01627 Hpt domain LPY96_09915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_09915 PF00672 HAMP domain LPY96_09915 PF00512 His Kinase A (phospho-acceptor) domain LPY96_09920 PF04286 Protein of unknown function (DUF445) LPY96_09930 PF00202 Aminotransferase class-III LPY96_09935 PF07690 Major Facilitator Superfamily LPY96_09940 PF02634 FdhD/NarQ family LPY96_09945 PF00384 Molybdopterin oxidoreductase LPY96_09955 PF07690 Major Facilitator Superfamily LPY96_09955 PF00083 Sugar (and other) transporter LPY96_09960 PF01814 Hemerythrin HHE cation binding domain LPY96_09965 PF00990 Diguanylate cyclase, GGDEF domain LPY96_09965 PF00072 Response regulator receiver domain LPY96_09970 PF01266 FAD dependent oxidoreductase LPY96_09975 PF00120 Glutamine synthetase, catalytic domain LPY96_09980 PF07722 Peptidase C26 LPY96_09990 PF00202 Aminotransferase class-III LPY96_09995 PF13416 Bacterial extracellular solute-binding protein LPY96_10000 PF13533 Biotin-lipoyl like LPY96_10005 PF07690 Major Facilitator Superfamily LPY96_10010 PF02321 Outer membrane efflux protein LPY96_10020 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_10025 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_10030 PF00171 Aldehyde dehydrogenase family LPY96_10045 PF03471 Transporter associated domain LPY96_10045 PF00571 CBS domain LPY96_10055 PF02130 Uncharacterized protein family UPF0054 LPY96_10065 PF02562 PhoH-like protein LPY96_10070 PF00919 Uncharacterized protein family UPF0004 LPY96_10070 PF01938 TRAM domain LPY96_10070 PF04055 Radical SAM superfamily LPY96_10085 PF01464 Transglycosylase SLT domain LPY96_10090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LPY96_10090 PF00355 Rieske [2Fe-2S] domain LPY96_10095 PF00032 Cytochrome b(C-terminal)/b6/petD LPY96_10095 PF00033 Cytochrome b/b6/petB LPY96_10100 PF02167 Cytochrome C1 family LPY96_10105 PF00043 Glutathione S-transferase, C-terminal domain LPY96_10105 PF02798 Glutathione S-transferase, N-terminal domain LPY96_10110 PF04386 Stringent starvation protein B LPY96_10130 PF00270 DEAD/DEAH box helicase LPY96_10130 PF08494 DEAD/H associated LPY96_10130 PF00271 Helicase conserved C-terminal domain LPY96_10135 PF02245 Methylpurine-DNA glycosylase (MPG) LPY96_10140 PF00672 HAMP domain LPY96_10140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_10140 PF02203 Tar ligand binding domain homologue LPY96_10145 PF01584 CheW-like domain LPY96_10180 PF00171 Aldehyde dehydrogenase family LPY96_10180 PF01619 Proline dehydrogenase LPY96_10180 PF14850 DNA-binding domain of Proline dehydrogenase LPY96_10180 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LPY96_10235 PF00589 Phage integrase family LPY96_10255 PF01068 ATP dependent DNA ligase domain LPY96_10255 PF13298 DNA polymerase Ligase (LigD) LPY96_10255 PF04679 ATP dependent DNA ligase C terminal region LPY96_10260 PF01612 3'-5' exonuclease LPY96_10260 PF00570 HRDC domain LPY96_10270 PF03781 Sulfatase-modifying factor enzyme 1 LPY96_10280 PF02601 Exonuclease VII, large subunit LPY96_10280 PF13742 OB-fold nucleic acid binding domain LPY96_10285 PF08331 Domain of unknown function (DUF1730) LPY96_10290 PF01256 Carbohydrate kinase LPY96_10290 PF03853 YjeF-related protein N-terminus LPY96_10295 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LPY96_10300 PF01520 N-acetylmuramoyl-L-alanine amidase LPY96_10300 PF11741 AMIN domain LPY96_10305 PF01119 DNA mismatch repair protein, C-terminal domain LPY96_10305 PF08676 MutL C terminal dimerisation domain LPY96_10325 PF07879 PHB/PHA accumulation regulator DNA-binding domain LPY96_10325 PF05233 PHB accumulation regulatory domain LPY96_10330 PF00106 short chain dehydrogenase LPY96_10335 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPY96_10340 PF01435 Peptidase family M48 LPY96_10345 PF00563 EAL domain LPY96_10345 PF00990 Diguanylate cyclase, GGDEF domain LPY96_10345 PF00072 Response regulator receiver domain LPY96_10355 PF07152 YaeQ protein LPY96_10360 PF00313 'Cold-shock' DNA-binding domain LPY96_10365 PF02798 Glutathione S-transferase, N-terminal domain LPY96_10365 PF14497 Glutathione S-transferase, C-terminal domain LPY96_10370 PF00135 Carboxylesterase family LPY96_10375 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LPY96_10380 PF00156 Phosphoribosyl transferase domain LPY96_10385 PF03880 DbpA RNA binding domain LPY96_10385 PF00270 DEAD/DEAH box helicase LPY96_10385 PF00271 Helicase conserved C-terminal domain LPY96_10390 PF00005 ABC transporter LPY96_10390 PF12848 ABC transporter LPY96_10390 PF16326 ABC transporter C-terminal domain LPY96_10400 PF00545 ribonuclease LPY96_10405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPY96_10405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPY96_10410 PF00459 Inositol monophosphatase family LPY96_10415 PF00588 SpoU rRNA Methylase family LPY96_10425 PF00563 EAL domain LPY96_10425 PF00990 Diguanylate cyclase, GGDEF domain LPY96_10425 PF03707 Bacterial signalling protein N terminal repeat LPY96_10425 PF13188 PAS domain LPY96_10430 PF04055 Radical SAM superfamily LPY96_10435 PF01132 Elongation factor P (EF-P) OB domain LPY96_10435 PF09285 Elongation factor P, C-terminal LPY96_10435 PF08207 Elongation factor P (EF-P) KOW-like domain LPY96_10445 PF01979 Amidohydrolase family LPY96_10455 PF13419 Haloacid dehalogenase-like hydrolase LPY96_10465 PF00295 Glycosyl hydrolases family 28 LPY96_10500 PF00753 Metallo-beta-lactamase superfamily LPY96_10510 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LPY96_10515 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LPY96_10530 PF01551 Peptidase family M23 LPY96_10530 PF08460 Bacterial SH3 domain LPY96_10535 PF01979 Amidohydrolase family LPY96_10540 PF01809 Putative membrane protein insertion efficiency factor LPY96_10550 PF01258 Prokaryotic dksA/traR C4-type zinc finger LPY96_10560 PF02657 Fe-S metabolism associated domain LPY96_10565 PF09190 DALR domain LPY96_10565 PF01406 tRNA synthetases class I (C) catalytic domain LPY96_10575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPY96_10575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPY96_10580 PF00764 Arginosuccinate synthase LPY96_10590 PF07687 Peptidase dimerisation domain LPY96_10590 PF01546 Peptidase family M20/M25/M40 LPY96_10595 PF00696 Amino acid kinase family LPY96_10595 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LPY96_10605 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPY96_10610 PF00206 Lyase LPY96_10620 PF00696 Amino acid kinase family LPY96_10620 PF01472 PUA domain LPY96_10625 PF00171 Aldehyde dehydrogenase family LPY96_10630 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LPY96_10630 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPY96_10650 PF02322 Cytochrome bd terminal oxidase subunit II LPY96_10655 PF01654 Cytochrome bd terminal oxidase subunit I LPY96_10660 PF00664 ABC transporter transmembrane region LPY96_10660 PF00005 ABC transporter LPY96_10665 PF00005 ABC transporter LPY96_10665 PF00664 ABC transporter transmembrane region LPY96_10670 PF00313 'Cold-shock' DNA-binding domain LPY96_10675 PF00561 alpha/beta hydrolase fold LPY96_10685 PF03918 Cytochrome C biogenesis protein LPY96_10690 PF08534 Redoxin LPY96_10695 PF01578 Cytochrome C assembly protein LPY96_10695 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LPY96_10700 PF03100 CcmE LPY96_10710 PF01578 Cytochrome C assembly protein LPY96_10715 PF03379 CcmB protein LPY96_10720 PF00005 ABC transporter LPY96_10725 PF00155 Aminotransferase class I and II LPY96_10730 PF00795 Carbon-nitrogen hydrolase LPY96_10745 PF01479 S4 domain LPY96_10745 PF00849 RNA pseudouridylate synthase LPY96_10755 PF02616 Segregation and condensation protein ScpA LPY96_10760 PF03795 YCII-related domain LPY96_10770 PF00356 Bacterial regulatory proteins, lacI family LPY96_10790 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_10795 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_10820 PF00795 Carbon-nitrogen hydrolase LPY96_10825 PF04371 Porphyromonas-type peptidyl-arginine deiminase LPY96_10835 PF00444 Ribosomal protein L36 LPY96_10845 PF00575 S1 RNA binding domain LPY96_10850 PF00216 Bacterial DNA-binding protein LPY96_10860 PF18073 Rubredoxin metal binding domain LPY96_10865 PF00953 Glycosyl transferase family 4 LPY96_10870 PF02719 Polysaccharide biosynthesis protein LPY96_10875 PF00483 Nucleotidyl transferase LPY96_10880 PF00999 Sodium/hydrogen exchanger family LPY96_10880 PF02254 TrkA-N domain LPY96_10895 PF00571 CBS domain LPY96_10895 PF00478 IMP dehydrogenase / GMP reductase domain LPY96_10900 PF00117 Glutamine amidotransferase class-I LPY96_10900 PF00958 GMP synthase C terminal domain LPY96_10900 PF02540 NAD synthase LPY96_10905 PF13356 Arm DNA-binding domain LPY96_10905 PF00589 Phage integrase family LPY96_10940 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_10940 PF00107 Zinc-binding dehydrogenase LPY96_10950 PF00248 Aldo/keto reductase family LPY96_10970 PF02534 Type IV secretory system Conjugative DNA transfer LPY96_10995 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPY96_11010 PF04610 TrbL/VirB6 plasmid conjugal transfer protein LPY96_11025 PF03743 Bacterial conjugation TrbI-like protein LPY96_11035 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LPY96_11040 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus LPY96_11040 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LPY96_11040 PF00361 Proton-conducting membrane transporter LPY96_11045 PF03466 LysR substrate binding domain LPY96_11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_11065 PF00072 Response regulator receiver domain LPY96_11065 PF00196 Bacterial regulatory proteins, luxR family LPY96_11085 PF00857 Isochorismatase family LPY96_11095 PF00929 Exonuclease LPY96_11100 PF14437 MafB19-like deaminase LPY96_11105 PF02742 Iron dependent repressor, metal binding and dimerisation domain LPY96_11105 PF01325 Iron dependent repressor, N-terminal DNA binding domain LPY96_11110 PF01566 Natural resistance-associated macrophage protein LPY96_11115 PF00561 alpha/beta hydrolase fold LPY96_11130 PF05977 Transmembrane secretion effector LPY96_11135 PF07969 Amidohydrolase family LPY96_11140 PF00924 Mechanosensitive ion channel LPY96_11140 PF05552 Conserved TM helix LPY96_11145 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LPY96_11145 PF02896 PEP-utilising enzyme, TIM barrel domain LPY96_11145 PF00391 PEP-utilising enzyme, mobile domain LPY96_11150 PF03618 Kinase/pyrophosphorylase LPY96_11170 PF01066 CDP-alcohol phosphatidyltransferase LPY96_11180 PF00561 alpha/beta hydrolase fold LPY96_11195 PF00355 Rieske [2Fe-2S] domain LPY96_11195 PF01266 FAD dependent oxidoreductase LPY96_11205 PF00575 S1 RNA binding domain LPY96_11205 PF09371 Tex-like protein N-terminal domain LPY96_11205 PF16921 Tex protein YqgF-like domain LPY96_11205 PF17674 HHH domain LPY96_11210 PF00072 Response regulator receiver domain LPY96_11210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_11210 PF09308 LuxQ, periplasmic LPY96_11210 PF00512 His Kinase A (phospho-acceptor) domain LPY96_11250 PF00034 Cytochrome c LPY96_11260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_11265 PF00873 AcrB/AcrD/AcrF family LPY96_11285 PF01081 KDPG and KHG aldolase LPY96_11290 PF00920 Dehydratase family LPY96_11295 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LPY96_11300 PF02685 Glucokinase LPY96_11305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LPY96_11305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LPY96_11310 PF00005 ABC transporter LPY96_11310 PF17912 MalK OB fold domain LPY96_11325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPY96_11330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPY96_11335 PF00890 FAD binding domain LPY96_11335 PF02910 Fumarate reductase flavoprotein C-term LPY96_11345 PF13085 2Fe-2S iron-sulfur cluster binding domain LPY96_11350 PF03937 Flavinator of succinate dehydrogenase LPY96_11360 PF12704 MacB-like periplasmic core domain LPY96_11360 PF02687 FtsX-like permease family LPY96_11365 PF00005 ABC transporter LPY96_11375 PF00753 Metallo-beta-lactamase superfamily LPY96_11375 PF03772 Competence protein LPY96_11380 PF01618 MotA/TolQ/ExbB proton channel family LPY96_11390 PF00005 ABC transporter LPY96_11390 PF00664 ABC transporter transmembrane region LPY96_11395 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LPY96_11400 PF02348 Cytidylyltransferase LPY96_11405 PF01451 Low molecular weight phosphotyrosine protein phosphatase LPY96_11415 PF08459 UvrC Helix-hairpin-helix N-terminal LPY96_11415 PF02151 UvrB/uvrC motif LPY96_11415 PF01541 GIY-YIG catalytic domain LPY96_11420 PF01066 CDP-alcohol phosphatidyltransferase LPY96_11440 PF13356 Arm DNA-binding domain LPY96_11440 PF00589 Phage integrase family LPY96_11455 PF03466 LysR substrate binding domain LPY96_11455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_11475 PF12705 PD-(D/E)XK nuclease superfamily LPY96_11475 PF13361 UvrD-like helicase C-terminal domain LPY96_11475 PF00580 UvrD/REP helicase N-terminal domain LPY96_11480 PF00665 Integrase core domain LPY96_11480 PF02796 Helix-turn-helix domain of resolvase LPY96_11485 PF01695 IstB-like ATP binding protein LPY96_11495 PF11398 Protein of unknown function (DUF2813) LPY96_11550 PF04610 TrbL/VirB6 plasmid conjugal transfer protein LPY96_11630 PF07690 Major Facilitator Superfamily LPY96_11640 PF00293 NUDIX domain LPY96_11640 PF09297 NADH pyrophosphatase zinc ribbon domain LPY96_11645 PF00132 Bacterial transferase hexapeptide (six repeats) LPY96_11660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_11660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_11660 PF02770 Acyl-CoA dehydrogenase, middle domain LPY96_11675 PF07690 Major Facilitator Superfamily LPY96_11680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_11680 PF03466 LysR substrate binding domain LPY96_11845 PF02021 Uncharacterised protein family UPF0102 LPY96_11885 PF00145 C-5 cytosine-specific DNA methylase LPY96_11890 PF00665 Integrase core domain LPY96_11890 PF02796 Helix-turn-helix domain of resolvase LPY96_11895 PF01695 IstB-like ATP binding protein LPY96_11900 PF01131 DNA topoisomerase LPY96_11900 PF01751 Toprim domain LPY96_11940 PF13614 AAA domain LPY96_11965 PF00145 C-5 cytosine-specific DNA methylase LPY96_11970 PF12137 RNA polymerase recycling family C-terminal LPY96_11970 PF00271 Helicase conserved C-terminal domain LPY96_11970 PF00176 SNF2 family N-terminal domain LPY96_11970 PF18339 RapA N-terminal Tudor like domain 1 LPY96_11970 PF18337 RapA N-terminal Tudor like domain LPY96_11975 PF01695 IstB-like ATP binding protein LPY96_11980 PF00665 Integrase core domain LPY96_11980 PF02796 Helix-turn-helix domain of resolvase LPY96_12040 PF01648 4'-phosphopantetheinyl transferase superfamily LPY96_12040 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LPY96_12050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPY96_12050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPY96_12050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPY96_12060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPY96_12070 PF17773 UPF0176 acylphosphatase like domain LPY96_12070 PF00581 Rhodanese-like domain LPY96_12075 PF00196 Bacterial regulatory proteins, luxR family LPY96_12075 PF00072 Response regulator receiver domain LPY96_12080 PF12111 Polyribonucleotide phosphorylase C terminal LPY96_12080 PF10150 Ribonuclease E/G family LPY96_12080 PF00575 S1 RNA binding domain LPY96_12085 PF01479 S4 domain LPY96_12085 PF00849 RNA pseudouridylate synthase LPY96_12090 PF11737 Protein of unknown function (DUF3300) LPY96_12095 PF02535 ZIP Zinc transporter LPY96_12105 PF01329 Pterin 4 alpha carbinolamine dehydratase LPY96_12110 PF01106 NifU-like domain LPY96_12170 PF17091 Inovirus G7P protein LPY96_12210 PF01494 FAD binding domain LPY96_12215 PF09335 SNARE associated Golgi protein LPY96_12225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LPY96_12230 PF07995 Glucose / Sorbosone dehydrogenase LPY96_12240 PF00144 Beta-lactamase LPY96_12250 PF00072 Response regulator receiver domain LPY96_12250 PF04397 LytTr DNA-binding domain LPY96_12255 PF07694 5TMR of 5TMR-LYT LPY96_12255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_12255 PF06580 Histidine kinase LPY96_12265 PF03797 Autotransporter beta-domain LPY96_12265 PF00082 Subtilase family LPY96_12270 PF00529 HlyD membrane-fusion protein of T1SS LPY96_12270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_12275 PF00873 AcrB/AcrD/AcrF family LPY96_12285 PF00072 Response regulator receiver domain LPY96_12285 PF00512 His Kinase A (phospho-acceptor) domain LPY96_12285 PF08448 PAS fold LPY96_12285 PF13426 PAS domain LPY96_12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_12290 PF00196 Bacterial regulatory proteins, luxR family LPY96_12290 PF00072 Response regulator receiver domain LPY96_12295 PF12951 Passenger-associated-transport-repeat LPY96_12295 PF12951 Passenger-associated-transport-repeat LPY96_12300 PF05598 Transposase domain (DUF772) LPY96_12315 PF01590 GAF domain LPY96_12315 PF00990 Diguanylate cyclase, GGDEF domain LPY96_12315 PF00360 Phytochrome region LPY96_12315 PF00563 EAL domain LPY96_12335 PF05974 Domain of unknown function (DUF892) LPY96_12365 PF14824 Sirohaem biosynthesis protein central LPY96_12365 PF10414 Sirohaem synthase dimerisation region LPY96_12365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPY96_12375 PF12804 MobA-like NTP transferase domain LPY96_12380 PF00994 Probable molybdopterin binding domain LPY96_12380 PF03454 MoeA C-terminal region (domain IV) LPY96_12380 PF03453 MoeA N-terminal region (domain I and II) LPY96_12390 PF03372 Endonuclease/Exonuclease/phosphatase family LPY96_12400 PF03377 TAL effector repeat LPY96_12420 PF00156 Phosphoribosyl transferase domain LPY96_12465 PF02796 Helix-turn-helix domain of resolvase LPY96_12465 PF00665 Integrase core domain LPY96_12470 PF01695 IstB-like ATP binding protein LPY96_12505 PF13700 Domain of unknown function (DUF4158) LPY96_12505 PF01526 Tn3 transposase DDE domain LPY96_12540 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LPY96_12545 PF03377 TAL effector repeat LPY96_12550 PF01381 Helix-turn-helix LPY96_12560 PF02796 Helix-turn-helix domain of resolvase LPY96_12560 PF00239 Resolvase, N terminal domain LPY96_12565 PF01555 DNA methylase LPY96_12570 PF09571 XcyI restriction endonuclease LPY96_12605 PF00145 C-5 cytosine-specific DNA methylase LPY96_12655 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_12655 PF13823 Alcohol dehydrogenase GroES-associated LPY96_12655 PF00107 Zinc-binding dehydrogenase LPY96_12695 PF00899 ThiF family LPY96_12700 PF00994 Probable molybdopterin binding domain LPY96_12700 PF03454 MoeA C-terminal region (domain IV) LPY96_12700 PF03453 MoeA N-terminal region (domain I and II) LPY96_12710 PF01011 PQQ enzyme repeat LPY96_12710 PF13360 PQQ-like domain LPY96_12720 PF13464 Domain of unknown function (DUF4115) LPY96_12730 PF04055 Radical SAM superfamily LPY96_12735 PF00334 Nucleoside diphosphate kinase LPY96_12745 PF00378 Enoyl-CoA hydratase/isomerase LPY96_12745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LPY96_12745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LPY96_12750 PF02803 Thiolase, C-terminal domain LPY96_12750 PF00108 Thiolase, N-terminal domain LPY96_12755 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LPY96_12760 PF12002 MgsA AAA+ ATPase C terminal LPY96_12760 PF16193 AAA C-terminal domain LPY96_12760 PF00004 ATPase family associated with various cellular activities (AAA) LPY96_12770 PF03548 Outer membrane lipoprotein carrier protein LolA LPY96_12780 PF01580 FtsK/SpoIIIE family LPY96_12780 PF09397 Ftsk gamma domain LPY96_12780 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LPY96_12780 PF17854 FtsK alpha domain LPY96_12785 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_12795 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LPY96_12800 PF01176 Translation initiation factor 1A / IF-1 LPY96_12810 PF02617 ATP-dependent Clp protease adaptor protein ClpS LPY96_12815 PF00293 NUDIX domain LPY96_12825 PF04356 Protein of unknown function (DUF489) LPY96_12830 PF12729 Four helix bundle sensory module for signal transduction LPY96_12830 PF00672 HAMP domain LPY96_12830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_12840 PF00563 EAL domain LPY96_12840 PF00990 Diguanylate cyclase, GGDEF domain LPY96_12840 PF03707 Bacterial signalling protein N terminal repeat LPY96_12845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_12845 PF07730 Histidine kinase LPY96_12850 PF00563 EAL domain LPY96_12850 PF00990 Diguanylate cyclase, GGDEF domain LPY96_12850 PF03707 Bacterial signalling protein N terminal repeat LPY96_12855 PF13188 PAS domain LPY96_12855 PF00989 PAS fold LPY96_12855 PF00512 His Kinase A (phospho-acceptor) domain LPY96_12855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_12855 PF13426 PAS domain LPY96_12875 PF01584 CheW-like domain LPY96_12875 PF00072 Response regulator receiver domain LPY96_12885 PF00460 Flagella basal body rod protein LPY96_12885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LPY96_12890 PF03963 Flagellar hook capping protein - N-terminal region LPY96_12895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LPY96_12895 PF00460 Flagella basal body rod protein LPY96_12895 PF07559 Flagellar basal body protein FlaE LPY96_12900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LPY96_12900 PF00460 Flagella basal body rod protein LPY96_12910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LPY96_12910 PF00460 Flagella basal body rod protein LPY96_12915 PF02107 Flagellar L-ring protein LPY96_12920 PF02119 Flagellar P-ring protein LPY96_12925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LPY96_12925 PF10135 Rod binding protein LPY96_12930 PF07196 Flagellin hook IN motif LPY96_12930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LPY96_12935 PF00700 Bacterial flagellin C-terminal helical region LPY96_12935 PF00669 Bacterial flagellin N-terminal helical region LPY96_12940 PF00700 Bacterial flagellin C-terminal helical region LPY96_12940 PF00669 Bacterial flagellin N-terminal helical region LPY96_12950 PF02465 Flagellar hook-associated protein 2 N-terminus LPY96_12950 PF07196 Flagellin hook IN motif LPY96_12950 PF07195 Flagellar hook-associated protein 2 C-terminus LPY96_12955 PF02561 Flagellar protein FliS LPY96_12970 PF00196 Bacterial regulatory proteins, luxR family LPY96_12970 PF00072 Response regulator receiver domain LPY96_12980 PF01339 CheB methylesterase LPY96_12980 PF00072 Response regulator receiver domain LPY96_12985 PF06490 Flagellar regulatory protein FleQ LPY96_12985 PF02954 Bacterial regulatory protein, Fis family LPY96_12985 PF00158 Sigma-54 interaction domain LPY96_12990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LPY96_13000 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPY96_13000 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPY96_13050 PF00534 Glycosyl transferases group 1 LPY96_13050 PF00535 Glycosyl transferase family 2 LPY96_13055 PF02049 Flagellar hook-basal body complex protein FliE LPY96_13060 PF01514 Secretory protein of YscJ/FliF family LPY96_13060 PF08345 Flagellar M-ring protein C-terminal LPY96_13065 PF01706 FliG C-terminal domain LPY96_13065 PF14841 FliG middle domain LPY96_13065 PF14842 FliG N-terminal domain LPY96_13075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPY96_13075 PF18269 T3SS EscN ATPase C-terminal domain LPY96_13095 PF02154 Flagellar motor switch protein FliM LPY96_13095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LPY96_13100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LPY96_13105 PF04347 Flagellar biosynthesis protein, FliO LPY96_13110 PF00813 FliP family LPY96_13115 PF01313 Bacterial export proteins, family 3 LPY96_13120 PF01311 Bacterial export proteins, family 1 LPY96_13125 PF00990 Diguanylate cyclase, GGDEF domain LPY96_13135 PF00563 EAL domain LPY96_13135 PF03707 Bacterial signalling protein N terminal repeat LPY96_13135 PF00990 Diguanylate cyclase, GGDEF domain LPY96_13140 PF01312 FlhB HrpN YscU SpaS Family LPY96_13145 PF00771 FHIPEP family LPY96_13150 PF00448 SRP54-type protein, GTPase domain LPY96_13155 PF10609 NUBPL iron-transfer P-loop NTPase LPY96_13160 PF04539 Sigma-70 region 3 LPY96_13160 PF04545 Sigma-70, region 4 LPY96_13160 PF04542 Sigma-70 region 2 LPY96_13165 PF00072 Response regulator receiver domain LPY96_13170 PF04344 Chemotaxis phosphatase, CheZ LPY96_13175 PF01584 CheW-like domain LPY96_13175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_13175 PF02895 Signal transducing histidine kinase, homodimeric domain LPY96_13175 PF00072 Response regulator receiver domain LPY96_13175 PF01627 Hpt domain LPY96_13240 PF05598 Transposase domain (DUF772) LPY96_13250 PF13614 AAA domain LPY96_13265 PF01618 MotA/TolQ/ExbB proton channel family LPY96_13270 PF13677 Membrane MotB of proton-channel complex MotA/MotB LPY96_13270 PF00691 OmpA family LPY96_13275 PF13614 AAA domain LPY96_13280 PF01584 CheW-like domain LPY96_13290 PF00072 Response regulator receiver domain LPY96_13295 PF01584 CheW-like domain LPY96_13295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_13295 PF09078 CheY binding LPY96_13295 PF02895 Signal transducing histidine kinase, homodimeric domain LPY96_13295 PF01627 Hpt domain LPY96_13300 PF02203 Tar ligand binding domain homologue LPY96_13300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13300 PF00672 HAMP domain LPY96_13315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13315 PF08269 Cache domain LPY96_13320 PF02203 Tar ligand binding domain homologue LPY96_13320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13320 PF00672 HAMP domain LPY96_13330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13330 PF02203 Tar ligand binding domain homologue LPY96_13330 PF00672 HAMP domain LPY96_13335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13335 PF00672 HAMP domain LPY96_13340 PF00672 HAMP domain LPY96_13340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13340 PF02203 Tar ligand binding domain homologue LPY96_13355 PF00672 HAMP domain LPY96_13355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13355 PF02203 Tar ligand binding domain homologue LPY96_13360 PF00672 HAMP domain LPY96_13360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13360 PF02203 Tar ligand binding domain homologue LPY96_13370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13370 PF02203 Tar ligand binding domain homologue LPY96_13370 PF00672 HAMP domain LPY96_13375 PF00672 HAMP domain LPY96_13375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13375 PF02203 Tar ligand binding domain homologue LPY96_13380 PF07238 PilZ domain LPY96_13380 PF07317 Flagellar regulator YcgR LPY96_13385 PF01584 CheW-like domain LPY96_13395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_13395 PF02203 Tar ligand binding domain homologue LPY96_13395 PF00672 HAMP domain LPY96_13400 PF01739 CheR methyltransferase, SAM binding domain LPY96_13400 PF03705 CheR methyltransferase, all-alpha domain LPY96_13405 PF03975 CheD chemotactic sensory transduction LPY96_13410 PF00072 Response regulator receiver domain LPY96_13410 PF01339 CheB methylesterase LPY96_13415 PF00563 EAL domain LPY96_13415 PF00990 Diguanylate cyclase, GGDEF domain LPY96_13415 PF03707 Bacterial signalling protein N terminal repeat LPY96_13420 PF00561 alpha/beta hydrolase fold LPY96_13425 PF00330 Aconitase family (aconitate hydratase) LPY96_13425 PF06434 Aconitate hydratase 2 N-terminus LPY96_13425 PF11791 Aconitate B N-terminal domain LPY96_13440 PF00694 Aconitase C-terminal domain LPY96_13440 PF00330 Aconitase family (aconitate hydratase) LPY96_13450 PF00501 AMP-binding enzyme LPY96_13450 PF13193 AMP-binding enzyme C-terminal domain LPY96_13455 PF00378 Enoyl-CoA hydratase/isomerase LPY96_13460 PF00072 Response regulator receiver domain LPY96_13460 PF01627 Hpt domain LPY96_13460 PF00512 His Kinase A (phospho-acceptor) domain LPY96_13460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_13465 PF00072 Response regulator receiver domain LPY96_13470 PF00152 tRNA synthetases class II (D, K and N) LPY96_13470 PF01336 OB-fold nucleic acid binding domain LPY96_13480 PF00072 Response regulator receiver domain LPY96_13480 PF04397 LytTr DNA-binding domain LPY96_13515 PF01368 DHH family LPY96_13515 PF02272 DHHA1 domain LPY96_13515 PF17768 RecJ OB domain LPY96_13525 PF01272 Transcription elongation factor, GreA/GreB, C-term LPY96_13525 PF03449 Transcription elongation factor, N-terminal LPY96_13540 PF00117 Glutamine amidotransferase class-I LPY96_13540 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LPY96_13545 PF05173 Dihydrodipicolinate reductase, C-terminus LPY96_13545 PF01113 Dihydrodipicolinate reductase, N-terminus LPY96_13550 PF03475 3-alpha domain LPY96_13550 PF03473 MOSC domain LPY96_13555 PF00155 Aminotransferase class I and II LPY96_13570 PF07664 Ferrous iron transport protein B C terminus LPY96_13570 PF02421 Ferrous iron transport protein B LPY96_13570 PF07670 Nucleoside recognition LPY96_13580 PF00378 Enoyl-CoA hydratase/isomerase LPY96_13590 PF00682 HMGL-like LPY96_13595 PF00106 short chain dehydrogenase LPY96_13600 PF01132 Elongation factor P (EF-P) OB domain LPY96_13600 PF08207 Elongation factor P (EF-P) KOW-like domain LPY96_13600 PF09285 Elongation factor P, C-terminal LPY96_13620 PF02913 FAD linked oxidases, C-terminal domain LPY96_13620 PF01565 FAD binding domain LPY96_13625 PF01842 ACT domain LPY96_13625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LPY96_13625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LPY96_13635 PF13520 Amino acid permease LPY96_13640 PF13520 Amino acid permease LPY96_13645 PF00596 Class II Aldolase and Adducin N-terminal domain LPY96_13650 PF03079 ARD/ARD' family LPY96_13670 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LPY96_13670 PF01502 Phosphoribosyl-AMP cyclohydrolase LPY96_13675 PF00977 Histidine biosynthesis protein LPY96_13680 PF00977 Histidine biosynthesis protein LPY96_13685 PF00117 Glutamine amidotransferase class-I LPY96_13690 PF00475 Imidazoleglycerol-phosphate dehydratase LPY96_13695 PF00155 Aminotransferase class I and II LPY96_13700 PF00815 Histidinol dehydrogenase LPY96_13705 PF01634 ATP phosphoribosyltransferase LPY96_13705 PF08029 HisG, C-terminal domain LPY96_13715 PF03129 Anticodon binding domain LPY96_13715 PF13393 Histidyl-tRNA synthetase LPY96_13720 PF13545 Crp-like helix-turn-helix domain LPY96_13720 PF00027 Cyclic nucleotide-binding domain LPY96_13730 PF00291 Pyridoxal-phosphate dependent enzyme LPY96_13730 PF14821 Threonine synthase N terminus LPY96_13740 PF08544 GHMP kinases C terminal LPY96_13740 PF00288 GHMP kinases N terminal domain LPY96_13745 PF00696 Amino acid kinase family LPY96_13745 PF01842 ACT domain LPY96_13745 PF13840 ACT domain LPY96_13745 PF00742 Homoserine dehydrogenase LPY96_13745 PF03447 Homoserine dehydrogenase, NAD binding domain LPY96_13760 PF04829 Pre-toxin domain with VENN motif LPY96_13760 PF05860 haemagglutination activity domain LPY96_13760 PF05860 haemagglutination activity domain LPY96_13760 PF13332 Hemagglutinin repeat LPY96_13760 PF13332 Hemagglutinin repeat LPY96_13760 PF04829 Pre-toxin domain with VENN motif LPY96_13765 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LPY96_13765 PF08479 POTRA domain, ShlB-type LPY96_13765 PF17287 POTRA domain LPY96_13775 PF14883 Hypothetical glycosyl hydrolase family 13 LPY96_13775 PF01522 Polysaccharide deacetylase LPY96_13780 PF00535 Glycosyl transferase family 2 LPY96_13795 PF00171 Aldehyde dehydrogenase family LPY96_13810 PF01180 Dihydroorotate dehydrogenase LPY96_13815 PF01565 FAD binding domain LPY96_13815 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LPY96_13825 PF01177 Asp/Glu/Hydantoin racemase LPY96_13830 PF07690 Major Facilitator Superfamily LPY96_13840 PF01569 PAP2 superfamily LPY96_13845 PF04551 GcpE protein LPY96_13855 PF00072 Response regulator receiver domain LPY96_13860 PF00150 Cellulase (glycosyl hydrolase family 5) LPY96_13860 PF02013 Cellulose or protein binding domain LPY96_13865 PF00990 Diguanylate cyclase, GGDEF domain LPY96_13865 PF01590 GAF domain LPY96_13865 PF00563 EAL domain LPY96_13865 PF00360 Phytochrome region LPY96_13870 PF00474 Sodium:solute symporter family LPY96_13875 PF00933 Glycosyl hydrolase family 3 N terminal domain LPY96_13875 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPY96_13875 PF14310 Fibronectin type III-like domain LPY96_13895 PF00342 Phosphoglucose isomerase LPY96_13900 PF02261 Aspartate decarboxylase LPY96_13905 PF02569 Pantoate-beta-alanine ligase LPY96_13910 PF02548 Ketopantoate hydroxymethyltransferase LPY96_13915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LPY96_13920 PF01743 Poly A polymerase head domain LPY96_13920 PF12626 Polymerase A arginine-rich C-terminus LPY96_13920 PF12627 Probable RNA and SrmB- binding site of polymerase A LPY96_13930 PF02649 Type I GTP cyclohydrolase folE2 LPY96_13955 PF00083 Sugar (and other) transporter LPY96_13965 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LPY96_13965 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LPY96_13975 PF16338 Domain of unknown function (DUF4968) LPY96_13975 PF17137 Domain of unknown function (DUF5110) LPY96_13975 PF01055 Glycosyl hydrolases family 31 LPY96_13990 PF00942 Cellulose binding domain LPY96_13990 PF03442 Carbohydrate binding domain X2 LPY96_14005 PF03466 LysR substrate binding domain LPY96_14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_14010 PF01081 KDPG and KHG aldolase LPY96_14015 PF13378 Enolase C-terminal domain-like LPY96_14015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LPY96_14020 PF08450 SMP-30/Gluconolactonase/LRE-like region LPY96_14025 PF05035 2-keto-3-deoxy-galactonokinase LPY96_14030 PF11953 Domain of unknown function (DUF3470) LPY96_14030 PF00037 4Fe-4S binding domain LPY96_14040 PF00701 Dihydrodipicolinate synthetase family LPY96_14055 PF00578 AhpC/TSA family LPY96_14060 PF02562 PhoH-like protein LPY96_14060 PF13638 PIN domain LPY96_14075 PF08543 Phosphomethylpyrimidine kinase LPY96_14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_14100 PF03466 LysR substrate binding domain LPY96_14105 PF17954 Quercetinase C-terminal cupin domain LPY96_14105 PF02678 Pirin LPY96_14110 PF08447 PAS fold LPY96_14110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_14110 PF13426 PAS domain LPY96_14120 PF02599 Global regulator protein family LPY96_14125 PF02272 DHHA1 domain LPY96_14125 PF01411 tRNA synthetases class II (A) LPY96_14125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPY96_14130 PF02631 RecX family LPY96_14135 PF00154 recA bacterial DNA recombination protein LPY96_14140 PF00717 Peptidase S24-like LPY96_14140 PF01726 LexA DNA binding domain LPY96_14145 PF03109 ABC1 family LPY96_14150 PF02464 Competence-damaged protein LPY96_14155 PF16360 GTP-binding GTPase Middle Region LPY96_14155 PF01926 50S ribosome-binding GTPase LPY96_14155 PF13167 GTP-binding GTPase N-terminal LPY96_14160 PF17209 Hfq protein LPY96_14170 PF00809 Pterin binding enzyme LPY96_14175 PF17862 AAA+ lid domain LPY96_14175 PF00004 ATPase family associated with various cellular activities (AAA) LPY96_14175 PF06480 FtsH Extracellular LPY96_14175 PF01434 Peptidase family M41 LPY96_14180 PF01728 FtsJ-like methyltransferase LPY96_14185 PF01985 CRS1 / YhbY (CRM) domain LPY96_14190 PF04430 Protein of unknown function (DUF498/DUF598) LPY96_14195 PF01476 LysM domain LPY96_14195 PF01551 Peptidase family M23 LPY96_14200 PF09335 SNARE associated Golgi protein LPY96_14210 PF01975 Survival protein SurE LPY96_14215 PF01713 Smr domain LPY96_14220 PF01142 tRNA pseudouridine synthase D (TruD) LPY96_14225 PF02542 YgbB family LPY96_14230 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LPY96_14235 PF04977 Septum formation initiator LPY96_14240 PF00113 Enolase, C-terminal TIM barrel domain LPY96_14240 PF03952 Enolase, N-terminal domain LPY96_14250 PF00793 DAHP synthetase I family LPY96_14255 PF00117 Glutamine amidotransferase class-I LPY96_14255 PF06418 CTP synthase N-terminus LPY96_14265 PF00204 DNA gyrase B LPY96_14265 PF00986 DNA gyrase B subunit, carboxyl terminus LPY96_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_14265 PF01751 Toprim domain LPY96_14280 PF01384 Phosphate transporter family LPY96_14290 PF01595 Cyclin M transmembrane N-terminal domain LPY96_14290 PF00571 CBS domain LPY96_14290 PF03471 Transporter associated domain LPY96_14305 PF00296 Luciferase-like monooxygenase LPY96_14310 PF07690 Major Facilitator Superfamily LPY96_14315 PF00664 ABC transporter transmembrane region LPY96_14315 PF00005 ABC transporter LPY96_14320 PF00005 ABC transporter LPY96_14355 PF08241 Methyltransferase domain LPY96_14370 PF00535 Glycosyl transferase family 2 LPY96_14375 PF01943 Polysaccharide biosynthesis protein LPY96_14380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LPY96_14400 PF05523 WxcM-like, C-terminal LPY96_14415 PF00034 Cytochrome c LPY96_14445 PF13406 Transglycosylase SLT domain LPY96_14480 PF08281 Sigma-70, region 4 LPY96_14480 PF04542 Sigma-70 region 2 LPY96_14490 PF00082 Subtilase family LPY96_14495 PF01578 Cytochrome C assembly protein LPY96_14505 PF03100 CcmE LPY96_14510 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LPY96_14510 PF01578 Cytochrome C assembly protein LPY96_14515 PF08534 Redoxin LPY96_14520 PF03918 Cytochrome C biogenesis protein LPY96_14530 PF00072 Response regulator receiver domain LPY96_14530 PF13188 PAS domain LPY96_14530 PF08448 PAS fold LPY96_14530 PF00512 His Kinase A (phospho-acceptor) domain LPY96_14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_14540 PF00512 His Kinase A (phospho-acceptor) domain LPY96_14540 PF01627 Hpt domain LPY96_14540 PF00072 Response regulator receiver domain LPY96_14540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPY96_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_14540 PF00672 HAMP domain LPY96_14560 PF01494 FAD binding domain LPY96_14565 PF00672 HAMP domain LPY96_14565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_14565 PF02203 Tar ligand binding domain homologue LPY96_14580 PF03466 LysR substrate binding domain LPY96_14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_14585 PF02525 Flavodoxin-like fold LPY96_14590 PF02403 Seryl-tRNA synthetase N-terminal domain LPY96_14590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPY96_14595 PF03544 Gram-negative bacterial TonB protein C-terminal LPY96_14605 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPY96_14610 PF01842 ACT domain LPY96_14610 PF01817 Chorismate mutase type II LPY96_14610 PF00800 Prephenate dehydratase LPY96_14615 PF00266 Aminotransferase class-V LPY96_14620 PF00174 Oxidoreductase molybdopterin binding domain LPY96_14625 PF01794 Ferric reductase like transmembrane component LPY96_14650 PF07702 UTRA domain LPY96_14650 PF00392 Bacterial regulatory proteins, gntR family LPY96_14665 PF07969 Amidohydrolase family LPY96_14670 PF00221 Aromatic amino acid lyase LPY96_14680 PF01175 Urocanase Rossmann-like domain LPY96_14680 PF17392 Urocanase C-terminal domain LPY96_14680 PF17391 Urocanase N-terminal domain LPY96_14690 PF13360 PQQ-like domain LPY96_14695 PF03989 DNA gyrase C-terminal domain, beta-propeller LPY96_14695 PF00521 DNA gyrase/topoisomerase IV, subunit A LPY96_14700 PF01008 Initiation factor 2 subunit family LPY96_14710 PF00152 tRNA synthetases class II (D, K and N) LPY96_14715 PF12826 Helix-hairpin-helix motif LPY96_14715 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LPY96_14715 PF03120 NAD-dependent DNA ligase OB-fold domain LPY96_14715 PF01653 NAD-dependent DNA ligase adenylation domain LPY96_14715 PF00533 BRCA1 C Terminus (BRCT) domain LPY96_14720 PF00155 Aminotransferase class I and II LPY96_14735 PF04354 ZipA, C-terminal FtsZ-binding domain LPY96_14740 PF02463 RecF/RecN/SMC N terminal domain LPY96_14745 PF03948 Ribosomal protein L9, C-terminal domain LPY96_14745 PF01281 Ribosomal protein L9, N-terminal domain LPY96_14750 PF01084 Ribosomal protein S18 LPY96_14755 PF01250 Ribosomal protein S6 LPY96_14760 PF01521 Iron-sulphur cluster biosynthesis LPY96_14765 PF00152 tRNA synthetases class II (D, K and N) LPY96_14765 PF01336 OB-fold nucleic acid binding domain LPY96_14785 PF04299 Putative FMN-binding domain LPY96_14810 PF00196 Bacterial regulatory proteins, luxR family LPY96_14810 PF00072 Response regulator receiver domain LPY96_14855 PF00484 Carbonic anhydrase LPY96_14860 PF06052 3-hydroxyanthranilic acid dioxygenase LPY96_14875 PF00266 Aminotransferase class-V LPY96_14880 PF01494 FAD binding domain LPY96_14885 PF00929 Exonuclease LPY96_14885 PF08411 Exonuclease C-terminal LPY96_14910 PF01513 ATP-NAD kinase LPY96_14915 PF01170 Putative RNA methylase family UPF0020 LPY96_14915 PF02926 THUMP domain LPY96_14915 PF10672 S-adenosylmethionine-dependent methyltransferase LPY96_14925 PF12848 ABC transporter LPY96_14925 PF16326 ABC transporter C-terminal domain LPY96_14925 PF00005 ABC transporter LPY96_14955 PF00581 Rhodanese-like domain LPY96_14960 PF00293 NUDIX domain LPY96_14965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPY96_14965 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPY96_14970 PF00378 Enoyl-CoA hydratase/isomerase LPY96_14980 PF00730 HhH-GPD superfamily base excision DNA repair protein LPY96_14980 PF10576 Iron-sulfur binding domain of endonuclease III LPY96_14980 PF00633 Helix-hairpin-helix motif LPY96_14985 PF01740 STAS domain LPY96_14985 PF00916 Sulfate permease family LPY96_14990 PF00484 Carbonic anhydrase LPY96_15005 PF12849 PBP superfamily domain LPY96_15010 PF12849 PBP superfamily domain LPY96_15015 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_15020 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_15025 PF00005 ABC transporter LPY96_15030 PF01895 PhoU domain LPY96_15040 PF00929 Exonuclease LPY96_15050 PF05598 Transposase domain (DUF772) LPY96_15060 PF00588 SpoU rRNA Methylase family LPY96_15060 PF08032 RNA 2'-O ribose methyltransferase substrate binding LPY96_15070 PF08206 Ribonuclease B OB domain LPY96_15070 PF00773 RNB domain LPY96_15070 PF00575 S1 RNA binding domain LPY96_15070 PF17876 Cold shock domain LPY96_15070 PF08461 Ribonuclease R winged-helix domain LPY96_15085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_15085 PF02770 Acyl-CoA dehydrogenase, middle domain LPY96_15085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_15090 PF01209 ubiE/COQ5 methyltransferase family LPY96_15095 PF00809 Pterin binding enzyme LPY96_15095 PF02574 Homocysteine S-methyltransferase LPY96_15100 PF02965 Vitamin B12 dependent methionine synthase, activation domain LPY96_15100 PF00809 Pterin binding enzyme LPY96_15100 PF02574 Homocysteine S-methyltransferase LPY96_15100 PF02310 B12 binding domain LPY96_15100 PF02607 B12 binding domain LPY96_15110 PF00294 pfkB family carbohydrate kinase LPY96_15115 PF07690 Major Facilitator Superfamily LPY96_15120 PF00356 Bacterial regulatory proteins, lacI family LPY96_15135 PF04102 SlyX LPY96_15140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPY96_15140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPY96_15140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPY96_15145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPY96_15145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPY96_15150 PF00255 Glutathione peroxidase LPY96_15160 PF00392 Bacterial regulatory proteins, gntR family LPY96_15165 PF00005 ABC transporter LPY96_15190 PF10415 Fumarase C C-terminus LPY96_15190 PF00206 Lyase LPY96_15195 PF01595 Cyclin M transmembrane N-terminal domain LPY96_15195 PF03471 Transporter associated domain LPY96_15195 PF00571 CBS domain LPY96_15205 PF08328 Adenylosuccinate lyase C-terminal LPY96_15205 PF00206 Lyase LPY96_15215 PF08007 Cupin superfamily protein LPY96_15225 PF16078 2-oxoglutarate dehydrogenase N-terminus LPY96_15225 PF00676 Dehydrogenase E1 component LPY96_15225 PF16870 2-oxoglutarate dehydrogenase C-terminal LPY96_15225 PF02779 Transketolase, pyrimidine binding domain LPY96_15230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPY96_15230 PF00364 Biotin-requiring enzyme LPY96_15230 PF02817 e3 binding domain LPY96_15235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPY96_15235 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_15240 PF03641 Possible lysine decarboxylase LPY96_15245 PF01205 Uncharacterized protein family UPF0029 LPY96_15250 PF00005 ABC transporter LPY96_15250 PF00664 ABC transporter transmembrane region LPY96_15255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_15255 PF03466 LysR substrate binding domain LPY96_15260 PF00664 ABC transporter transmembrane region LPY96_15260 PF00005 ABC transporter LPY96_15260 PF03412 Peptidase C39 family LPY96_15285 PF08543 Phosphomethylpyrimidine kinase LPY96_15290 PF00226 DnaJ domain LPY96_15290 PF01556 DnaJ C terminal domain LPY96_15290 PF00684 DnaJ central domain LPY96_15295 PF00012 Hsp70 protein LPY96_15300 PF01025 GrpE LPY96_15305 PF01628 HrcA protein C terminal domain LPY96_15305 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LPY96_15310 PF02463 RecF/RecN/SMC N terminal domain LPY96_15315 PF01475 Ferric uptake regulator family LPY96_15320 PF04355 SmpA / OmlA family LPY96_15325 PF03658 RnfH family Ubiquitin LPY96_15330 PF03364 Polyketide cyclase / dehydrase and lipid transport LPY96_15335 PF01668 SmpB protein LPY96_15340 PF00082 Subtilase family LPY96_15365 PF02796 Helix-turn-helix domain of resolvase LPY96_15365 PF00665 Integrase core domain LPY96_15390 PF03412 Peptidase C39 family LPY96_15390 PF00005 ABC transporter LPY96_15390 PF00664 ABC transporter transmembrane region LPY96_15415 PF00990 Diguanylate cyclase, GGDEF domain LPY96_15425 PF00990 Diguanylate cyclase, GGDEF domain LPY96_15430 PF02321 Outer membrane efflux protein LPY96_15435 PF00106 short chain dehydrogenase LPY96_15440 PF00873 AcrB/AcrD/AcrF family LPY96_15445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_15460 PF03466 LysR substrate binding domain LPY96_15465 PF00691 OmpA family LPY96_15465 PF05736 OprF membrane domain LPY96_15470 PF00875 DNA photolyase LPY96_15470 PF03441 FAD binding domain of DNA photolyase LPY96_15475 PF00772 DnaB-like helicase N terminal domain LPY96_15475 PF03796 DnaB-like helicase C terminal domain LPY96_15480 PF03358 NADPH-dependent FMN reductase LPY96_15485 PF13537 Glutamine amidotransferase domain LPY96_15485 PF00733 Asparagine synthase LPY96_15495 PF00043 Glutathione S-transferase, C-terminal domain LPY96_15495 PF02798 Glutathione S-transferase, N-terminal domain LPY96_15505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_15505 PF02770 Acyl-CoA dehydrogenase, middle domain LPY96_15505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_15520 PF01026 TatD related DNase LPY96_15525 PF00899 ThiF family LPY96_15540 PF00313 'Cold-shock' DNA-binding domain LPY96_15555 PF00484 Carbonic anhydrase LPY96_15570 PF05681 Fumarate hydratase (Fumerase) LPY96_15570 PF05683 Fumarase C-terminus LPY96_15575 PF00005 ABC transporter LPY96_15580 PF00970 Oxidoreductase FAD-binding domain LPY96_15580 PF00175 Oxidoreductase NAD-binding domain LPY96_15585 PF00255 Glutathione peroxidase LPY96_15590 PF01432 Peptidase family M3 LPY96_15595 PF12802 MarR family LPY96_15620 PF00854 POT family LPY96_15630 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPY96_15630 PF14310 Fibronectin type III-like domain LPY96_15630 PF00933 Glycosyl hydrolase family 3 N terminal domain LPY96_15640 PF07690 Major Facilitator Superfamily LPY96_15645 PF00529 HlyD membrane-fusion protein of T1SS LPY96_15645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_15650 PF02321 Outer membrane efflux protein LPY96_15665 PF00521 DNA gyrase/topoisomerase IV, subunit A LPY96_15665 PF03989 DNA gyrase C-terminal domain, beta-propeller LPY96_15670 PF05724 Thiopurine S-methyltransferase (TPMT) LPY96_15675 PF00210 Ferritin-like domain LPY96_15685 PF00593 TonB dependent receptor LPY96_15685 PF07715 TonB-dependent Receptor Plug Domain LPY96_15695 PF13537 Glutamine amidotransferase domain LPY96_15695 PF00733 Asparagine synthase LPY96_15700 PF07687 Peptidase dimerisation domain LPY96_15700 PF01546 Peptidase family M20/M25/M40 LPY96_15705 PF03960 ArsC family LPY96_15710 PF14602 Hexapeptide repeat of succinyl-transferase LPY96_15710 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LPY96_15710 PF00132 Bacterial transferase hexapeptide (six repeats) LPY96_15720 PF00557 Metallopeptidase family M24 LPY96_15755 PF00318 Ribosomal protein S2 LPY96_15760 PF00889 Elongation factor TS LPY96_15765 PF00990 Diguanylate cyclase, GGDEF domain LPY96_15765 PF00072 Response regulator receiver domain LPY96_15770 PF00696 Amino acid kinase family LPY96_15775 PF01765 Ribosome recycling factor LPY96_15780 PF01255 Putative undecaprenyl diphosphate synthase LPY96_15790 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LPY96_15790 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LPY96_15790 PF13288 DXP reductoisomerase C-terminal domain LPY96_15795 PF17820 PDZ domain LPY96_15795 PF02163 Peptidase family M50 LPY96_15800 PF01103 Surface antigen LPY96_15800 PF07244 Surface antigen variable number repeat LPY96_15810 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LPY96_15810 PF00132 Bacterial transferase hexapeptide (six repeats) LPY96_15815 PF07977 FabA-like domain LPY96_15820 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LPY96_15820 PF00132 Bacterial transferase hexapeptide (six repeats) LPY96_15825 PF02684 Lipid-A-disaccharide synthetase LPY96_15830 PF01351 Ribonuclease HII LPY96_15835 PF01336 OB-fold nucleic acid binding domain LPY96_15835 PF14579 Helix-hairpin-helix motif LPY96_15835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LPY96_15835 PF02811 PHP domain LPY96_15835 PF07733 Bacterial DNA polymerase III alpha NTPase domain LPY96_15840 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LPY96_15855 PF03653 Uncharacterised protein family (UPF0093) LPY96_15875 PF03551 Transcriptional regulator PadR-like family LPY96_15895 PF02592 Putative vitamin uptake transporter LPY96_15905 PF02574 Homocysteine S-methyltransferase LPY96_15910 PF00324 Amino acid permease LPY96_15915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LPY96_15920 PF13732 Domain of unknown function (DUF4162) LPY96_15920 PF00005 ABC transporter LPY96_15935 PF09334 tRNA synthetases class I (M) LPY96_15935 PF01588 Putative tRNA binding domain LPY96_15945 PF04060 Putative Fe-S cluster LPY96_15960 PF04542 Sigma-70 region 2 LPY96_15960 PF04545 Sigma-70, region 4 LPY96_16005 PF01042 Endoribonuclease L-PSP LPY96_16015 PF09924 Uncharacterised conserved protein (DUF2156) LPY96_16015 PF03706 Lysylphosphatidylglycerol synthase TM region LPY96_16050 PF07690 Major Facilitator Superfamily LPY96_16060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LPY96_16065 PF08274 PhnA Zinc-Ribbon LPY96_16065 PF03831 PhnA domain LPY96_16075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPY96_16095 PF01258 Prokaryotic dksA/traR C4-type zinc finger LPY96_16105 PF07043 Protein of unknown function (DUF1328) LPY96_16110 PF01863 Protein of unknown function DUF45 LPY96_16125 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LPY96_16125 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LPY96_16130 PF03797 Autotransporter beta-domain LPY96_16130 PF12951 Passenger-associated-transport-repeat LPY96_16130 PF00082 Subtilase family LPY96_16135 PF02803 Thiolase, C-terminal domain LPY96_16135 PF00108 Thiolase, N-terminal domain LPY96_16150 PF00990 Diguanylate cyclase, GGDEF domain LPY96_16150 PF00072 Response regulator receiver domain LPY96_16165 PF01068 ATP dependent DNA ligase domain LPY96_16165 PF04675 DNA ligase N terminus LPY96_16165 PF04679 ATP dependent DNA ligase C terminal region LPY96_16175 PF01068 ATP dependent DNA ligase domain LPY96_16175 PF04675 DNA ligase N terminus LPY96_16175 PF04679 ATP dependent DNA ligase C terminal region LPY96_16180 PF00270 DEAD/DEAH box helicase LPY96_16180 PF08494 DEAD/H associated LPY96_16180 PF00271 Helicase conserved C-terminal domain LPY96_16190 PF01494 FAD binding domain LPY96_16195 PF00313 'Cold-shock' DNA-binding domain LPY96_16200 PF01048 Phosphorylase superfamily LPY96_16205 PF00156 Phosphoribosyl transferase domain LPY96_16210 PF00933 Glycosyl hydrolase family 3 N terminal domain LPY96_16215 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LPY96_16220 PF01593 Flavin containing amine oxidoreductase LPY96_16225 PF01323 DSBA-like thioredoxin domain LPY96_16235 PF05958 tRNA (Uracil-5-)-methyltransferase LPY96_16245 PF11967 Recombination protein O N terminal LPY96_16245 PF02565 Recombination protein O C terminal LPY96_16250 PF07650 KH domain LPY96_16250 PF01926 50S ribosome-binding GTPase LPY96_16255 PF00035 Double-stranded RNA binding motif LPY96_16255 PF14622 Ribonuclease-III-like LPY96_16265 PF10502 Signal peptidase, peptidase S26 LPY96_16270 PF06421 GTP-binding protein LepA C-terminus LPY96_16270 PF03144 Elongation factor Tu domain 2 LPY96_16270 PF00679 Elongation factor G C-terminus LPY96_16270 PF00009 Elongation factor Tu GTP binding domain LPY96_16275 PF13180 PDZ domain LPY96_16285 PF04542 Sigma-70 region 2 LPY96_16285 PF08281 Sigma-70, region 4 LPY96_16290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LPY96_16290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LPY96_16290 PF00378 Enoyl-CoA hydratase/isomerase LPY96_16295 PF01545 Cation efflux family LPY96_16300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LPY96_16300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LPY96_16305 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LPY96_16305 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LPY96_16305 PF00378 Enoyl-CoA hydratase/isomerase LPY96_16310 PF00378 Enoyl-CoA hydratase/isomerase LPY96_16315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_16315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_16315 PF02770 Acyl-CoA dehydrogenase, middle domain LPY96_16320 PF00171 Aldehyde dehydrogenase family LPY96_16335 PF07745 Glycosyl hydrolase family 53 LPY96_16340 PF16355 Domain of unknown function (DUF4982) LPY96_16340 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LPY96_16340 PF00703 Glycosyl hydrolases family 2 LPY96_16340 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LPY96_16340 PF02837 Glycosyl hydrolases family 2, sugar binding domain LPY96_16395 PF03527 RHS protein LPY96_16395 PF05593 RHS Repeat LPY96_16405 PF05593 RHS Repeat LPY96_16405 PF03527 RHS protein LPY96_16415 PF01624 MutS domain I LPY96_16415 PF05188 MutS domain II LPY96_16415 PF05192 MutS domain III LPY96_16415 PF05190 MutS family domain IV LPY96_16415 PF00488 MutS domain V LPY96_16425 PF00141 Peroxidase LPY96_16430 PF01479 S4 domain LPY96_16445 PF01554 MatE LPY96_16450 PF01245 Ribosomal protein L19 LPY96_16455 PF01746 tRNA (Guanine-1)-methyltransferase LPY96_16460 PF01782 RimM N-terminal domain LPY96_16460 PF05239 PRC-barrel domain LPY96_16465 PF00886 Ribosomal protein S16 LPY96_16470 PF01063 Amino-transferase class IV LPY96_16475 PF03060 Nitronate monooxygenase LPY96_16480 PF00448 SRP54-type protein, GTPase domain LPY96_16480 PF02881 SRP54-type protein, helical bundle domain LPY96_16480 PF02978 Signal peptide binding domain LPY96_16485 PF01578 Cytochrome C assembly protein LPY96_16495 PF01263 Aldose 1-epimerase LPY96_16500 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LPY96_16515 PF00072 Response regulator receiver domain LPY96_16520 PF00072 Response regulator receiver domain LPY96_16520 PF13426 PAS domain LPY96_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_16525 PF00672 HAMP domain LPY96_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_16525 PF00512 His Kinase A (phospho-acceptor) domain LPY96_16525 PF00072 Response regulator receiver domain LPY96_16525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPY96_16525 PF01627 Hpt domain LPY96_16530 PF03705 CheR methyltransferase, all-alpha domain LPY96_16530 PF01739 CheR methyltransferase, SAM binding domain LPY96_16535 PF01339 CheB methylesterase LPY96_16540 PF00990 Diguanylate cyclase, GGDEF domain LPY96_16540 PF00072 Response regulator receiver domain LPY96_16545 PF07237 Protein of unknown function (DUF1428) LPY96_16550 PF00085 Thioredoxin LPY96_16555 PF07715 TonB-dependent Receptor Plug Domain LPY96_16555 PF00593 TonB dependent receptor LPY96_16560 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LPY96_16560 PF04616 Glycosyl hydrolases family 43 LPY96_16565 PF00072 Response regulator receiver domain LPY96_16565 PF13188 PAS domain LPY96_16565 PF08448 PAS fold LPY96_16565 PF00512 His Kinase A (phospho-acceptor) domain LPY96_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_16570 PF00512 His Kinase A (phospho-acceptor) domain LPY96_16570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_16570 PF17149 Periplasmic sensor domain found in signal transduction proteins LPY96_16570 PF01627 Hpt domain LPY96_16570 PF00672 HAMP domain LPY96_16570 PF00072 Response regulator receiver domain LPY96_16580 PF13581 Histidine kinase-like ATPase domain LPY96_16585 PF01740 STAS domain LPY96_16590 PF08678 Rsbr N terminal LPY96_16590 PF01740 STAS domain LPY96_16605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_16605 PF00183 Hsp90 protein LPY96_16610 PF12833 Helix-turn-helix domain LPY96_16620 PF05656 Protein of unknown function (DUF805) LPY96_16625 PF18073 Rubredoxin metal binding domain LPY96_16635 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LPY96_16640 PF00510 Cytochrome c oxidase subunit III LPY96_16645 PF00115 Cytochrome C and Quinol oxidase polypeptide I LPY96_16650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LPY96_16650 PF06481 COX Aromatic Rich Motif LPY96_16655 PF00589 Phage integrase family LPY96_16680 PF13087 AAA domain LPY96_16680 PF13091 PLD-like domain LPY96_16685 PF03389 MobA/MobL family LPY96_16775 PF02401 LytB protein LPY96_16780 PF01252 Signal peptidase (SPase) II LPY96_16785 PF08264 Anticodon-binding domain of tRNA LPY96_16785 PF00133 tRNA synthetases class I (I, L, M and V) LPY96_16785 PF06827 Zinc finger found in FPG and IleRS LPY96_16790 PF06574 FAD synthetase LPY96_16790 PF01687 Riboflavin kinase LPY96_16795 PF03023 Lipid II flippase MurJ LPY96_16800 PF01649 Ribosomal protein S20 LPY96_16805 PF01926 50S ribosome-binding GTPase LPY96_16805 PF01018 GTP1/OBG LPY96_16810 PF01016 Ribosomal L27 protein LPY96_16815 PF00829 Ribosomal prokaryotic L21 protein LPY96_16820 PF17760 UvrA interaction domain LPY96_16820 PF17755 UvrA DNA-binding domain LPY96_16820 PF00005 ABC transporter LPY96_16835 PF00378 Enoyl-CoA hydratase/isomerase LPY96_16860 PF04376 Arginine-tRNA-protein transferase, N terminus LPY96_16860 PF04377 Arginine-tRNA-protein transferase, C terminus LPY96_16870 PF02222 ATP-grasp domain LPY96_16900 PF00730 HhH-GPD superfamily base excision DNA repair protein LPY96_16915 PF00196 Bacterial regulatory proteins, luxR family LPY96_16915 PF00072 Response regulator receiver domain LPY96_16920 PF07730 Histidine kinase LPY96_16930 PF03775 Septum formation inhibitor MinC, C-terminal domain LPY96_16930 PF05209 Septum formation inhibitor MinC, N-terminal domain LPY96_16935 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LPY96_16940 PF03776 Septum formation topological specificity factor MinE LPY96_16950 PF08521 Two-component sensor kinase N-terminal LPY96_16950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_16950 PF00512 His Kinase A (phospho-acceptor) domain LPY96_16955 PF00072 Response regulator receiver domain LPY96_16955 PF00486 Transcriptional regulatory protein, C terminal LPY96_16985 PF07690 Major Facilitator Superfamily LPY96_16990 PF02347 Glycine cleavage system P-protein LPY96_16995 PF00135 Carboxylesterase family LPY96_17000 PF00248 Aldo/keto reductase family LPY96_17005 PF00199 Catalase LPY96_17005 PF06628 Catalase-related immune-responsive LPY96_17005 PF18011 C-terminal domain found in long catalases LPY96_17035 PF02311 AraC-like ligand binding domain LPY96_17035 PF12833 Helix-turn-helix domain LPY96_17060 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LPY96_17060 PF07676 WD40-like Beta Propeller Repeat LPY96_17060 PF00326 Prolyl oligopeptidase family LPY96_17075 PF03169 OPT oligopeptide transporter protein LPY96_17085 PF00326 Prolyl oligopeptidase family LPY96_17090 PF02811 PHP domain LPY96_17090 PF14579 Helix-hairpin-helix motif LPY96_17090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LPY96_17090 PF07733 Bacterial DNA polymerase III alpha NTPase domain LPY96_17105 PF01726 LexA DNA binding domain LPY96_17105 PF00717 Peptidase S24-like LPY96_17140 PF00111 2Fe-2S iron-sulfur cluster binding domain LPY96_17140 PF01799 [2Fe-2S] binding domain LPY96_17145 PF03450 CO dehydrogenase flavoprotein C-terminal domain LPY96_17145 PF00941 FAD binding domain in molybdopterin dehydrogenase LPY96_17150 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LPY96_17150 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LPY96_17155 PF17755 UvrA DNA-binding domain LPY96_17175 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_17185 PF00106 short chain dehydrogenase LPY96_17190 PF07971 Glycosyl hydrolase family 92 LPY96_17190 PF17678 Glycosyl hydrolase family 92 N-terminal domain LPY96_17210 PF01256 Carbohydrate kinase LPY96_17215 PF00300 Histidine phosphatase superfamily (branch 1) LPY96_17215 PF13456 Reverse transcriptase-like LPY96_17220 PF13977 BetI-type transcriptional repressor, C-terminal LPY96_17220 PF00440 Bacterial regulatory proteins, tetR family LPY96_17235 PF01555 DNA methylase LPY96_17250 PF00271 Helicase conserved C-terminal domain LPY96_17250 PF00176 SNF2 family N-terminal domain LPY96_17280 PF00440 Bacterial regulatory proteins, tetR family LPY96_17295 PF01433 Peptidase family M1 domain LPY96_17295 PF11838 ERAP1-like C-terminal domain LPY96_17300 PF00709 Adenylosuccinate synthetase LPY96_17310 PF01145 SPFH domain / Band 7 family LPY96_17315 PF01145 SPFH domain / Band 7 family LPY96_17315 PF12221 Bacterial membrane protein N terminal LPY96_17320 PF00072 Response regulator receiver domain LPY96_17325 PF00226 DnaJ domain LPY96_17325 PF01556 DnaJ C terminal domain LPY96_17335 PF08534 Redoxin LPY96_17345 PF00912 Transglycosylase LPY96_17345 PF00905 Penicillin binding protein transpeptidase domain LPY96_17345 PF06832 Penicillin-Binding Protein C-terminus Family LPY96_17360 PF17962 Bacterial macroglobulin domain 6 LPY96_17360 PF00207 Alpha-2-macroglobulin family LPY96_17360 PF07703 Alpha-2-macroglobulin bait region domain LPY96_17360 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LPY96_17360 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LPY96_17360 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LPY96_17360 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LPY96_17360 PF01835 MG2 domain LPY96_17370 PF07715 TonB-dependent Receptor Plug Domain LPY96_17370 PF00593 TonB dependent receptor LPY96_17375 PF04303 PrpF protein LPY96_17390 PF00330 Aconitase family (aconitate hydratase) LPY96_17390 PF00694 Aconitase C-terminal domain LPY96_17395 PF00285 Citrate synthase, C-terminal domain LPY96_17405 PF06506 Propionate catabolism activator LPY96_17405 PF00158 Sigma-54 interaction domain LPY96_17405 PF02954 Bacterial regulatory protein, Fis family LPY96_17425 PF09115 DNA polymerase III, delta subunit, C terminal LPY96_17430 PF02618 YceG-like family LPY96_17435 PF04715 Anthranilate synthase component I, N terminal region LPY96_17435 PF00425 chorismate binding enzyme LPY96_17440 PF00109 Beta-ketoacyl synthase, N-terminal domain LPY96_17440 PF02801 Beta-ketoacyl synthase, C-terminal domain LPY96_17445 PF00550 Phosphopantetheine attachment site LPY96_17455 PF00698 Acyl transferase domain LPY96_17465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPY96_17465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPY96_17470 PF01783 Ribosomal L32p protein family LPY96_17475 PF02620 Large ribosomal RNA subunit accumulation protein YceD LPY96_17480 PF02545 Maf-like protein LPY96_17500 PF07726 ATPase family associated with various cellular activities (AAA) LPY96_17500 PF17863 AAA lid domain LPY96_17510 PF11992 Domain of unknown function (DUF3488) LPY96_17510 PF13559 Domain of unknown function (DUF4129) LPY96_17510 PF01841 Transglutaminase-like superfamily LPY96_17520 PF01230 HIT domain LPY96_17525 PF02132 RecR protein LPY96_17525 PF13662 Toprim domain LPY96_17530 PF02575 YbaB/EbfC DNA-binding family LPY96_17535 PF12170 DNA polymerase III tau subunit V interacting with alpha LPY96_17535 PF12169 DNA polymerase III subunits gamma and tau domain III LPY96_17560 PF07669 Eco57I restriction-modification methylase LPY96_17560 PF12950 TaqI-like C-terminal specificity domain LPY96_17575 PF00665 Integrase core domain LPY96_17575 PF02796 Helix-turn-helix domain of resolvase LPY96_17675 PF02391 MoaE protein LPY96_17680 PF02597 ThiS family LPY96_17685 PF01967 MoaC family LPY96_17695 PF04055 Radical SAM superfamily LPY96_17695 PF06463 Molybdenum Cofactor Synthesis C LPY96_17700 PF12706 Beta-lactamase superfamily domain LPY96_17700 PF00753 Metallo-beta-lactamase superfamily LPY96_17710 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LPY96_17730 PF00929 Exonuclease LPY96_17735 PF00075 RNase H LPY96_17745 PF16123 Hydroxyacylglutathione hydrolase C-terminus LPY96_17745 PF00753 Metallo-beta-lactamase superfamily LPY96_17750 PF01476 LysM domain LPY96_17750 PF05257 CHAP domain LPY96_17775 PF00216 Bacterial DNA-binding protein LPY96_17780 PF05362 Lon protease (S16) C-terminal proteolytic domain LPY96_17780 PF00004 ATPase family associated with various cellular activities (AAA) LPY96_17780 PF02190 ATP-dependent protease La (LON) substrate-binding domain LPY96_17785 PF10431 C-terminal, D2-small domain, of ClpB protein LPY96_17785 PF07724 AAA domain (Cdc48 subfamily) LPY96_17785 PF06689 ClpX C4-type zinc finger LPY96_17790 PF00574 Clp protease LPY96_17795 PF05698 Bacterial trigger factor protein (TF) C-terminus LPY96_17795 PF05697 Bacterial trigger factor protein (TF) LPY96_17805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_17805 PF00512 His Kinase A (phospho-acceptor) domain LPY96_17805 PF00989 PAS fold LPY96_17840 PF00180 Isocitrate/isopropylmalate dehydrogenase LPY96_17850 PF00462 Glutaredoxin LPY96_17855 PF01435 Peptidase family M48 LPY96_17855 PF13181 Tetratricopeptide repeat LPY96_17860 PF00486 Transcriptional regulatory protein, C terminal LPY96_17860 PF00072 Response regulator receiver domain LPY96_17865 PF00512 His Kinase A (phospho-acceptor) domain LPY96_17865 PF00989 PAS fold LPY96_17865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_17865 PF11808 Phosphate regulon sensor protein PhoR LPY96_17870 PF13089 Polyphosphate kinase N-terminal domain LPY96_17870 PF13090 Polyphosphate kinase C-terminal domain 2 LPY96_17870 PF17941 Polyphosphate kinase C-terminal domain 1 LPY96_17870 PF02503 Polyphosphate kinase middle domain LPY96_17875 PF02541 Ppx/GppA phosphatase family LPY96_17880 PF13439 Glycosyltransferase Family 4 LPY96_17880 PF00534 Glycosyl transferases group 1 LPY96_17885 PF01569 PAP2 superfamily LPY96_17890 PF00149 Calcineurin-like phosphoesterase LPY96_17920 PF00156 Phosphoribosyl transferase domain LPY96_17935 PF08245 Mur ligase middle domain LPY96_17935 PF02875 Mur ligase family, glutamate ligase domain LPY96_17945 PF00300 Histidine phosphatase superfamily (branch 1) LPY96_17950 PF10459 Peptidase S46 LPY96_17960 PF05506 Domain of unknown function (DUF756) LPY96_17960 PF04185 Phosphoesterase family LPY96_17975 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_17975 PF00107 Zinc-binding dehydrogenase LPY96_17985 PF00005 ABC transporter LPY96_17985 PF17850 CysA C-terminal regulatory domain LPY96_17985 PF12857 TOBE-like domain LPY96_17990 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_17995 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_18005 PF00155 Aminotransferase class I and II LPY96_18015 PF00849 RNA pseudouridylate synthase LPY96_18025 PF05736 OprF membrane domain LPY96_18025 PF00691 OmpA family LPY96_18030 PF00107 Zinc-binding dehydrogenase LPY96_18030 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_18035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LPY96_18035 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_18045 PF00043 Glutathione S-transferase, C-terminal domain LPY96_18045 PF02798 Glutathione S-transferase, N-terminal domain LPY96_18050 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LPY96_18050 PF00056 lactate/malate dehydrogenase, NAD binding domain LPY96_18055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LPY96_18060 PF03144 Elongation factor Tu domain 2 LPY96_18060 PF00009 Elongation factor Tu GTP binding domain LPY96_18060 PF00679 Elongation factor G C-terminus LPY96_18080 PF01474 Class-II DAHP synthetase family LPY96_18095 PF02600 Disulfide bond formation protein DsbB LPY96_18100 PF01196 Ribosomal protein L17 LPY96_18105 PF01000 RNA polymerase Rpb3/RpoA insert domain LPY96_18105 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LPY96_18105 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LPY96_18110 PF00163 Ribosomal protein S4/S9 N-terminal domain LPY96_18110 PF01479 S4 domain LPY96_18115 PF00411 Ribosomal protein S11 LPY96_18120 PF00416 Ribosomal protein S13/S18 LPY96_18125 PF00344 SecY translocase LPY96_18130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LPY96_18135 PF00327 Ribosomal protein L30p/L7e LPY96_18140 PF00333 Ribosomal protein S5, N-terminal domain LPY96_18140 PF03719 Ribosomal protein S5, C-terminal domain LPY96_18145 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LPY96_18150 PF00347 Ribosomal protein L6 LPY96_18155 PF00410 Ribosomal protein S8 LPY96_18160 PF00253 Ribosomal protein S14p/S29e LPY96_18165 PF00673 ribosomal L5P family C-terminus LPY96_18165 PF00281 Ribosomal protein L5 LPY96_18170 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LPY96_18170 PF00467 KOW motif LPY96_18175 PF00238 Ribosomal protein L14p/L23e LPY96_18180 PF00366 Ribosomal protein S17 LPY96_18185 PF00831 Ribosomal L29 protein LPY96_18190 PF00252 Ribosomal protein L16p/L10e LPY96_18195 PF07650 KH domain LPY96_18195 PF00189 Ribosomal protein S3, C-terminal domain LPY96_18200 PF00237 Ribosomal protein L22p/L17e LPY96_18205 PF00203 Ribosomal protein S19 LPY96_18210 PF03947 Ribosomal Proteins L2, C-terminal domain LPY96_18210 PF00181 Ribosomal Proteins L2, RNA binding domain LPY96_18215 PF00276 Ribosomal protein L23 LPY96_18220 PF00573 Ribosomal protein L4/L1 family LPY96_18225 PF00297 Ribosomal protein L3 LPY96_18230 PF00338 Ribosomal protein S10p/S20e LPY96_18235 PF00009 Elongation factor Tu GTP binding domain LPY96_18235 PF03144 Elongation factor Tu domain 2 LPY96_18235 PF03143 Elongation factor Tu C-terminal domain LPY96_18240 PF00679 Elongation factor G C-terminus LPY96_18240 PF14492 Elongation Factor G, domain II LPY96_18240 PF03764 Elongation factor G, domain IV LPY96_18240 PF00009 Elongation factor Tu GTP binding domain LPY96_18240 PF03144 Elongation factor Tu domain 2 LPY96_18245 PF00177 Ribosomal protein S7p/S5e LPY96_18250 PF00164 Ribosomal protein S12/S23 LPY96_18255 PF00623 RNA polymerase Rpb1, domain 2 LPY96_18255 PF04997 RNA polymerase Rpb1, domain 1 LPY96_18255 PF04983 RNA polymerase Rpb1, domain 3 LPY96_18255 PF05000 RNA polymerase Rpb1, domain 4 LPY96_18255 PF04998 RNA polymerase Rpb1, domain 5 LPY96_18260 PF00562 RNA polymerase Rpb2, domain 6 LPY96_18260 PF10385 RNA polymerase beta subunit external 1 domain LPY96_18260 PF04560 RNA polymerase Rpb2, domain 7 LPY96_18260 PF04561 RNA polymerase Rpb2, domain 2 LPY96_18260 PF04563 RNA polymerase beta subunit LPY96_18260 PF04565 RNA polymerase Rpb2, domain 3 LPY96_18265 PF00542 Ribosomal protein L7/L12 C-terminal domain LPY96_18265 PF16320 Ribosomal protein L7/L12 dimerisation domain LPY96_18270 PF00466 Ribosomal protein L10 LPY96_18275 PF00687 Ribosomal protein L1p/L10e family LPY96_18280 PF00298 Ribosomal protein L11, RNA binding domain LPY96_18280 PF03946 Ribosomal protein L11, N-terminal domain LPY96_18285 PF00467 KOW motif LPY96_18285 PF02357 Transcription termination factor nusG LPY96_18290 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LPY96_18300 PF03144 Elongation factor Tu domain 2 LPY96_18300 PF00009 Elongation factor Tu GTP binding domain LPY96_18300 PF03143 Elongation factor Tu C-terminal domain LPY96_18320 PF01926 50S ribosome-binding GTPase LPY96_18320 PF06071 Protein of unknown function (DUF933) LPY96_18325 PF01195 Peptidyl-tRNA hydrolase LPY96_18330 PF01386 Ribosomal L25p family LPY96_18330 PF14693 Ribosomal protein TL5, C-terminal domain LPY96_18335 PF14572 Phosphoribosyl synthetase-associated domain LPY96_18335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LPY96_18345 PF00288 GHMP kinases N terminal domain LPY96_18345 PF08544 GHMP kinases C terminal LPY96_18350 PF03550 Outer membrane lipoprotein LolB LPY96_18360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LPY96_18360 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LPY96_18360 PF01488 Shikimate / quinate 5-dehydrogenase LPY96_18365 PF00472 RF-1 domain LPY96_18365 PF03462 PCRF domain LPY96_18375 PF00994 Probable molybdopterin binding domain LPY96_18380 PF03976 Polyphosphate kinase 2 (PPK2) LPY96_18390 PF00708 Acylphosphatase LPY96_18395 PF08534 Redoxin LPY96_18400 PF03631 Virulence factor BrkB LPY96_18405 PF03358 NADPH-dependent FMN reductase LPY96_18415 PF17189 Glycosyl hydrolase family 30 beta sandwich domain LPY96_18415 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain LPY96_18425 PF04073 Aminoacyl-tRNA editing domain LPY96_18430 PF04151 Bacterial pre-peptidase C-terminal domain LPY96_18430 PF00082 Subtilase family LPY96_18435 PF04151 Bacterial pre-peptidase C-terminal domain LPY96_18435 PF00082 Subtilase family LPY96_18445 PF01063 Amino-transferase class IV LPY96_18460 PF02233 NAD(P) transhydrogenase beta subunit LPY96_18465 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LPY96_18485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LPY96_18485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LPY96_18485 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LPY96_18515 PF01612 3'-5' exonuclease LPY96_18515 PF01367 5'-3' exonuclease, C-terminal SAM fold LPY96_18515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPY96_18515 PF00476 DNA polymerase family A LPY96_18520 PF00293 NUDIX domain LPY96_18530 PF00561 alpha/beta hydrolase fold LPY96_18535 PF17827 PrmC N-terminal domain LPY96_18535 PF05175 Methyltransferase small domain LPY96_18540 PF10417 C-terminal domain of 1-Cys peroxiredoxin LPY96_18540 PF00578 AhpC/TSA family LPY96_18545 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPY96_18545 PF13192 Thioredoxin domain LPY96_18550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_18550 PF03466 LysR substrate binding domain LPY96_18555 PF01272 Transcription elongation factor, GreA/GreB, C-term LPY96_18555 PF14760 Rnk N-terminus LPY96_18560 PF00923 Transaldolase/Fructose-6-phosphate aldolase LPY96_18570 PF01625 Peptide methionine sulfoxide reductase LPY96_18580 PF00196 Bacterial regulatory proteins, luxR family LPY96_18580 PF00072 Response regulator receiver domain LPY96_18585 PF17149 Periplasmic sensor domain found in signal transduction proteins LPY96_18585 PF00512 His Kinase A (phospho-acceptor) domain LPY96_18585 PF01627 Hpt domain LPY96_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_18585 PF00072 Response regulator receiver domain LPY96_18585 PF00672 HAMP domain LPY96_18590 PF00072 Response regulator receiver domain LPY96_18590 PF00990 Diguanylate cyclase, GGDEF domain LPY96_18605 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LPY96_18605 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPY96_18615 PF00892 EamA-like transporter family LPY96_18650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LPY96_18650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LPY96_18655 PF08450 SMP-30/Gluconolactonase/LRE-like region LPY96_18675 PF00378 Enoyl-CoA hydratase/isomerase LPY96_18680 PF00171 Aldehyde dehydrogenase family LPY96_18685 PF13193 AMP-binding enzyme C-terminal domain LPY96_18685 PF00501 AMP-binding enzyme LPY96_18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_18690 PF03466 LysR substrate binding domain LPY96_18695 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LPY96_18695 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LPY96_18700 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LPY96_18705 PF07729 FCD domain LPY96_18705 PF00392 Bacterial regulatory proteins, gntR family LPY96_18725 PF01494 FAD binding domain LPY96_18730 PF01494 FAD binding domain LPY96_18745 PF01923 Cobalamin adenosyltransferase LPY96_18750 PF00850 Histone deacetylase domain LPY96_18765 PF03968 OstA-like protein LPY96_18765 PF04453 LPS transport system D LPY96_18770 PF00639 PPIC-type PPIASE domain LPY96_18770 PF09312 SurA N-terminal domain LPY96_18775 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LPY96_18780 PF00398 Ribosomal RNA adenine dimethylase LPY96_18785 PF04379 ApaG domain LPY96_18790 PF00149 Calcineurin-like phosphoesterase LPY96_18795 PF00005 ABC transporter LPY96_18795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LPY96_18800 PF12911 N-terminal TM domain of oligopeptide transport permease C LPY96_18800 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_18805 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_18810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LPY96_18815 PF00296 Luciferase-like monooxygenase LPY96_18840 PF03358 NADPH-dependent FMN reductase LPY96_18845 PF00296 Luciferase-like monooxygenase LPY96_18855 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_18860 PF00005 ABC transporter LPY96_18865 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LPY96_18865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_18870 PF00158 Sigma-54 interaction domain LPY96_18875 PF00186 Dihydrofolate reductase LPY96_18885 PF00303 Thymidylate synthase LPY96_18890 PF01790 Prolipoprotein diacylglyceryl transferase LPY96_18910 PF01219 Prokaryotic diacylglycerol kinase LPY96_18920 PF00512 His Kinase A (phospho-acceptor) domain LPY96_18920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_18920 PF08521 Two-component sensor kinase N-terminal LPY96_18925 PF00486 Transcriptional regulatory protein, C terminal LPY96_18925 PF00072 Response regulator receiver domain LPY96_18930 PF13472 GDSL-like Lipase/Acylhydrolase family LPY96_18935 PF00005 ABC transporter LPY96_18945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LPY96_18955 PF00005 ABC transporter LPY96_18960 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_18980 PF07715 TonB-dependent Receptor Plug Domain LPY96_18980 PF00593 TonB dependent receptor LPY96_18990 PF00248 Aldo/keto reductase family LPY96_18995 PF01773 Na+ dependent nucleoside transporter N-terminus LPY96_18995 PF07670 Nucleoside recognition LPY96_18995 PF07662 Na+ dependent nucleoside transporter C-terminus LPY96_19000 PF00294 pfkB family carbohydrate kinase LPY96_19010 PF01207 Dihydrouridine synthase (Dus) LPY96_19015 PF13649 Methyltransferase domain LPY96_19030 PF00328 Histidine phosphatase superfamily (branch 2) LPY96_19065 PF00311 Phosphoenolpyruvate carboxylase LPY96_19075 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LPY96_19075 PF05221 S-adenosyl-L-homocysteine hydrolase LPY96_19105 PF00128 Alpha amylase, catalytic domain LPY96_19110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LPY96_19125 PF00082 Subtilase family LPY96_19125 PF09286 Pro-kumamolisin, activation domain LPY96_19130 PF00550 Phosphopantetheine attachment site LPY96_19130 PF14765 Polyketide synthase dehydratase LPY96_19130 PF08659 KR domain LPY96_19130 PF02801 Beta-ketoacyl synthase, C-terminal domain LPY96_19130 PF00109 Beta-ketoacyl synthase, N-terminal domain LPY96_19130 PF16197 Ketoacyl-synthetase C-terminal extension LPY96_19130 PF00107 Zinc-binding dehydrogenase LPY96_19130 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_19130 PF00698 Acyl transferase domain LPY96_19140 PF02219 Methylenetetrahydrofolate reductase LPY96_19150 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPY96_19155 PF07996 Type IV secretion system proteins LPY96_19165 PF04610 TrbL/VirB6 plasmid conjugal transfer protein LPY96_19170 PF04335 VirB8 protein LPY96_19175 PF03524 Conjugal transfer protein LPY96_19180 PF03743 Bacterial conjugation TrbI-like protein LPY96_19185 PF00437 Type II/IV secretion system protein LPY96_19190 PF02534 Type IV secretory system Conjugative DNA transfer LPY96_19225 PF03377 TAL effector repeat LPY96_19235 PF02195 ParB-like nuclease domain LPY96_19240 PF13614 AAA domain LPY96_19280 PF03377 TAL effector repeat LPY96_19310 PF01936 NYN domain LPY96_19310 PF09722 Protein of unknown function (DUF2384) LPY96_19320 PF02796 Helix-turn-helix domain of resolvase LPY96_19320 PF00239 Resolvase, N terminal domain LPY96_19335 PF17841 BID domain of Bartonella effector protein (Bep) LPY96_19335 PF02661 Fic/DOC family LPY96_19390 PF01464 Transglycosylase SLT domain LPY96_19405 PF04956 TrbC/VIRB2 family LPY96_19410 PF05101 Type IV secretory pathway, VirB3-like protein LPY96_19415 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPY96_19425 PF00293 NUDIX domain LPY96_19430 PF02810 SEC-C motif LPY96_19430 PF07517 SecA DEAD-like domain LPY96_19430 PF01043 SecA preprotein cross-linking domain LPY96_19430 PF07516 SecA Wing and Scaffold domain LPY96_19435 PF01464 Transglycosylase SLT domain LPY96_19435 PF01551 Peptidase family M23 LPY96_19435 PF10145 Phage-related minor tail protein LPY96_19445 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LPY96_19450 PF12327 FtsZ family, C-terminal domain LPY96_19450 PF00091 Tubulin/FtsZ family, GTPase domain LPY96_19455 PF02491 SHS2 domain inserted in FTSA LPY96_19460 PF03799 Cell division protein FtsQ LPY96_19460 PF08478 POTRA domain, FtsQ-type LPY96_19465 PF01820 D-ala D-ala ligase N-terminus LPY96_19465 PF07478 D-ala D-ala ligase C-terminus LPY96_19470 PF01225 Mur ligase family, catalytic domain LPY96_19470 PF02875 Mur ligase family, glutamate ligase domain LPY96_19470 PF08245 Mur ligase middle domain LPY96_19475 PF04101 Glycosyltransferase family 28 C-terminal domain LPY96_19475 PF03033 Glycosyltransferase family 28 N-terminal domain LPY96_19480 PF01098 Cell cycle protein LPY96_19485 PF00953 Glycosyl transferase family 4 LPY96_19490 PF01225 Mur ligase family, catalytic domain LPY96_19490 PF02875 Mur ligase family, glutamate ligase domain LPY96_19490 PF08245 Mur ligase middle domain LPY96_19495 PF01225 Mur ligase family, catalytic domain LPY96_19495 PF02875 Mur ligase family, glutamate ligase domain LPY96_19495 PF08245 Mur ligase middle domain LPY96_19500 PF03717 Penicillin-binding Protein dimerisation domain LPY96_19500 PF00905 Penicillin binding protein transpeptidase domain LPY96_19505 PF04999 Cell division protein FtsL LPY96_19510 PF01795 MraW methylase family LPY96_19515 PF02381 MraZ protein, putative antitoxin-like LPY96_19545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPY96_19555 PF02021 Uncharacterised protein family UPF0102 LPY96_19560 PF04307 LexA-binding, inner membrane-associated putative hydrolase LPY96_19565 PF02913 FAD linked oxidases, C-terminal domain LPY96_19565 PF01565 FAD binding domain LPY96_19575 PF00072 Response regulator receiver domain LPY96_19575 PF00486 Transcriptional regulatory protein, C terminal LPY96_19595 PF02669 K+-transporting ATPase, c chain LPY96_19605 PF03814 Potassium-transporting ATPase A subunit LPY96_19625 PF00586 AIR synthase related protein, N-terminal domain LPY96_19625 PF02769 AIR synthase related protein, C-terminal domain LPY96_19630 PF01029 NusB family LPY96_19635 PF00885 6,7-dimethyl-8-ribityllumazine synthase LPY96_19640 PF00925 GTP cyclohydrolase II LPY96_19640 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LPY96_19645 PF00677 Lumazine binding domain LPY96_19660 PF01872 RibD C-terminal domain LPY96_19660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LPY96_19670 PF03477 ATP cone domain LPY96_19675 PF00464 Serine hydroxymethyltransferase LPY96_19685 PF12848 ABC transporter LPY96_19685 PF00005 ABC transporter LPY96_19695 PF00892 EamA-like transporter family LPY96_19700 PF02567 Phenazine biosynthesis-like protein LPY96_19705 PF00392 Bacterial regulatory proteins, gntR family LPY96_19705 PF00155 Aminotransferase class I and II LPY96_19715 PF00756 Putative esterase LPY96_19720 PF04828 Glutathione-dependent formaldehyde-activating enzyme LPY96_19725 PF00107 Zinc-binding dehydrogenase LPY96_19725 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_19730 PF02583 Metal-sensitive transcriptional repressor LPY96_19745 PF00072 Response regulator receiver domain LPY96_19745 PF00486 Transcriptional regulatory protein, C terminal LPY96_19750 PF00672 HAMP domain LPY96_19750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_19750 PF00512 His Kinase A (phospho-acceptor) domain LPY96_19755 PF04107 Glutamate-cysteine ligase family 2(GCS2) LPY96_19770 PF01926 50S ribosome-binding GTPase LPY96_19775 PF00034 Cytochrome c LPY96_19785 PF01323 DSBA-like thioredoxin domain LPY96_19800 PF02028 BCCT, betaine/carnitine/choline family transporter LPY96_19805 PF00171 Aldehyde dehydrogenase family LPY96_19810 PF00732 GMC oxidoreductase LPY96_19810 PF05199 GMC oxidoreductase LPY96_19815 PF01966 HD domain LPY96_19815 PF01743 Poly A polymerase head domain LPY96_19815 PF12627 Probable RNA and SrmB- binding site of polymerase A LPY96_19825 PF01979 Amidohydrolase family LPY96_19830 PF01380 SIS domain LPY96_19835 PF00356 Bacterial regulatory proteins, lacI family LPY96_19840 PF07690 Major Facilitator Superfamily LPY96_19845 PF00392 Bacterial regulatory proteins, gntR family LPY96_19845 PF07702 UTRA domain LPY96_19885 PF03934 Type II secretion system (T2SS), protein K LPY96_19890 PF07963 Prokaryotic N-terminal methylation motif LPY96_19890 PF11612 Type II secretion system (T2SS), protein J LPY96_19895 PF07963 Prokaryotic N-terminal methylation motif LPY96_19895 PF02501 Type II secretion system (T2SS), protein I LPY96_19900 PF07963 Prokaryotic N-terminal methylation motif LPY96_19900 PF12019 Type II transport protein GspH LPY96_19905 PF07963 Prokaryotic N-terminal methylation motif LPY96_19905 PF08334 Type II secretion system (T2SS), protein G LPY96_19910 PF00482 Type II secretion system (T2SS), protein F LPY96_19920 PF03958 Bacterial type II/III secretion system short domain LPY96_19920 PF00263 Bacterial type II and III secretion system protein LPY96_19965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LPY96_19970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_19970 PF00512 His Kinase A (phospho-acceptor) domain LPY96_19975 PF00072 Response regulator receiver domain LPY96_19980 PF01590 GAF domain LPY96_19980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_19980 PF00512 His Kinase A (phospho-acceptor) domain LPY96_19980 PF08446 PAS fold LPY96_19980 PF00360 Phytochrome region LPY96_19985 PF04972 BON domain LPY96_19990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LPY96_19990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LPY96_19995 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LPY96_19995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LPY96_20030 PF01467 Cytidylyltransferase-like LPY96_20030 PF00293 NUDIX domain LPY96_20040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_20040 PF03466 LysR substrate binding domain LPY96_20050 PF11818 C-terminal domain of tail specific protease (DUF3340) LPY96_20050 PF00595 PDZ domain LPY96_20050 PF03572 Peptidase family S41 LPY96_20050 PF17804 Tail specific protease N-terminal domain LPY96_20055 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LPY96_20055 PF04055 Radical SAM superfamily LPY96_20060 PF03099 Biotin/lipoate A/B protein ligase family LPY96_20065 PF04359 Protein of unknown function (DUF493) LPY96_20075 PF07943 Penicillin-binding protein 5, C-terminal domain LPY96_20075 PF00768 D-alanyl-D-alanine carboxypeptidase LPY96_20080 PF05036 Sporulation related domain LPY96_20080 PF03330 Lytic transglycolase LPY96_20085 PF13406 Transglycosylase SLT domain LPY96_20090 PF00295 Glycosyl hydrolases family 28 LPY96_20095 PF01098 Cell cycle protein LPY96_20100 PF03717 Penicillin-binding Protein dimerisation domain LPY96_20100 PF00905 Penicillin binding protein transpeptidase domain LPY96_20110 PF04085 rod shape-determining protein MreC LPY96_20120 PF00294 pfkB family carbohydrate kinase LPY96_20125 PF00158 Sigma-54 interaction domain LPY96_20125 PF01590 GAF domain LPY96_20125 PF02954 Bacterial regulatory protein, Fis family LPY96_20135 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_20135 PF00107 Zinc-binding dehydrogenase LPY96_20145 PF00034 Cytochrome c LPY96_20145 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LPY96_20145 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LPY96_20150 PF00497 Bacterial extracellular solute-binding proteins, family 3 LPY96_20155 PF13360 PQQ-like domain LPY96_20170 PF11838 ERAP1-like C-terminal domain LPY96_20170 PF01433 Peptidase family M1 domain LPY96_20175 PF00563 EAL domain LPY96_20175 PF00990 Diguanylate cyclase, GGDEF domain LPY96_20175 PF03707 Bacterial signalling protein N terminal repeat LPY96_20180 PF01209 ubiE/COQ5 methyltransferase family LPY96_20190 PF13533 Biotin-lipoyl like LPY96_20195 PF13673 Acetyltransferase (GNAT) domain LPY96_20205 PF00004 ATPase family associated with various cellular activities (AAA) LPY96_20205 PF07724 AAA domain (Cdc48 subfamily) LPY96_20205 PF10431 C-terminal, D2-small domain, of ClpB protein LPY96_20210 PF00227 Proteasome subunit LPY96_20215 PF02899 Phage integrase, N-terminal SAM-like domain LPY96_20215 PF00589 Phage integrase family LPY96_20225 PF01678 Diaminopimelate epimerase LPY96_20235 PF04304 Protein of unknown function (DUF454) LPY96_20240 PF00326 Prolyl oligopeptidase family LPY96_20240 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LPY96_20245 PF00155 Aminotransferase class I and II LPY96_20255 PF00326 Prolyl oligopeptidase family LPY96_20255 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LPY96_20280 PF03900 Porphobilinogen deaminase, C-terminal domain LPY96_20280 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LPY96_20285 PF04397 LytTr DNA-binding domain LPY96_20285 PF00072 Response regulator receiver domain LPY96_20290 PF06580 Histidine kinase LPY96_20290 PF07694 5TMR of 5TMR-LYT LPY96_20300 PF13632 Glycosyl transferase family group 2 LPY96_20315 PF00990 Diguanylate cyclase, GGDEF domain LPY96_20320 PF01740 STAS domain LPY96_20320 PF00916 Sulfate permease family LPY96_20325 PF00553 Cellulose binding domain LPY96_20325 PF00150 Cellulase (glycosyl hydrolase family 5) LPY96_20330 PF00672 HAMP domain LPY96_20330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPY96_20330 PF02203 Tar ligand binding domain homologue LPY96_20335 PF08448 PAS fold LPY96_20335 PF08447 PAS fold LPY96_20335 PF00990 Diguanylate cyclase, GGDEF domain LPY96_20335 PF00563 EAL domain LPY96_20360 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPY96_20360 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPY96_20370 PF01204 Trehalase LPY96_20380 PF01544 CorA-like Mg2+ transporter protein LPY96_20390 PF00324 Amino acid permease LPY96_20400 PF00497 Bacterial extracellular solute-binding proteins, family 3 LPY96_20405 PF00892 EamA-like transporter family LPY96_20430 PF00990 Diguanylate cyclase, GGDEF domain LPY96_20435 PF07759 Protein of unknown function (DUF1615) LPY96_20440 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LPY96_20440 PF00326 Prolyl oligopeptidase family LPY96_20450 PF03176 MMPL family LPY96_20450 PF12823 Domain of unknown function (DUF3817) LPY96_20480 PF13409 Glutathione S-transferase, N-terminal domain LPY96_20490 PF00106 short chain dehydrogenase LPY96_20505 PF00106 short chain dehydrogenase LPY96_20550 PF02463 RecF/RecN/SMC N terminal domain LPY96_20555 PF17831 Pyruvate dehydrogenase E1 component middle domain LPY96_20555 PF00456 Transketolase, thiamine diphosphate binding domain LPY96_20560 PF07745 Glycosyl hydrolase family 53 LPY96_20590 PF13419 Haloacid dehalogenase-like hydrolase LPY96_20595 PF07729 FCD domain LPY96_20595 PF00392 Bacterial regulatory proteins, gntR family LPY96_20605 PF00698 Acyl transferase domain LPY96_20615 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LPY96_20620 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LPY96_20630 PF01039 Carboxyl transferase domain LPY96_20635 PF06857 Malonate decarboxylase delta subunit (MdcD) LPY96_20640 PF16957 Malonate decarboxylase, alpha subunit, transporter LPY96_20660 PF04264 YceI-like domain LPY96_20665 PF00881 Nitroreductase family LPY96_20680 PF02592 Putative vitamin uptake transporter LPY96_20685 PF08335 GlnD PII-uridylyltransferase LPY96_20685 PF03710 Glutamate-ammonia ligase adenylyltransferase LPY96_20695 PF08450 SMP-30/Gluconolactonase/LRE-like region LPY96_20710 PF00793 DAHP synthetase I family LPY96_20730 PF00118 TCP-1/cpn60 chaperonin family LPY96_20735 PF00166 Chaperonin 10 Kd subunit LPY96_20745 PF04231 Endonuclease I LPY96_20750 PF00106 short chain dehydrogenase LPY96_20760 PF01852 START domain LPY96_20775 PF03091 CutA1 divalent ion tolerance protein LPY96_20780 PF11412 Disulphide bond corrector protein DsbC LPY96_20780 PF02683 Cytochrome C biogenesis protein transmembrane region LPY96_20785 PF01220 Dehydroquinase class II LPY96_20790 PF00364 Biotin-requiring enzyme LPY96_20800 PF02785 Biotin carboxylase C-terminal domain LPY96_20800 PF00289 Biotin carboxylase, N-terminal domain LPY96_20800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPY96_20835 PF01381 Helix-turn-helix LPY96_20850 PF02954 Bacterial regulatory protein, Fis family LPY96_20880 PF00782 Dual specificity phosphatase, catalytic domain LPY96_20885 PF12146 Serine aminopeptidase, S33 LPY96_20885 PF12147 Putative methyltransferase LPY96_20890 PF01066 CDP-alcohol phosphatidyltransferase LPY96_20895 PF02142 MGS-like domain LPY96_20895 PF01808 AICARFT/IMPCHase bienzyme LPY96_20905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LPY96_20905 PF02843 Phosphoribosylglycinamide synthetase, C domain LPY96_20905 PF02844 Phosphoribosylglycinamide synthetase, N domain LPY96_20915 PF12805 FUSC-like inner membrane protein yccS LPY96_20920 PF07690 Major Facilitator Superfamily LPY96_20925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_20925 PF03466 LysR substrate binding domain LPY96_20930 PF07690 Major Facilitator Superfamily LPY96_20945 PF03186 CobD/Cbib protein LPY96_20945 PF17113 Regulatory signalling modulator protein AmpE LPY96_20950 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LPY96_20950 PF00293 NUDIX domain LPY96_20950 PF09297 NADH pyrophosphatase zinc ribbon domain LPY96_20960 PF01521 Iron-sulphur cluster biosynthesis LPY96_20980 PF00072 Response regulator receiver domain LPY96_20980 PF00486 Transcriptional regulatory protein, C terminal LPY96_20985 PF00672 HAMP domain LPY96_20985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_20985 PF00512 His Kinase A (phospho-acceptor) domain LPY96_20985 PF01627 Hpt domain LPY96_20985 PF00072 Response regulator receiver domain LPY96_20985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPY96_20990 PF00210 Ferritin-like domain LPY96_21000 PF00293 NUDIX domain LPY96_21015 PF00380 Ribosomal protein S9/S16 LPY96_21020 PF00572 Ribosomal protein L13 LPY96_21025 PF03232 Ubiquinone biosynthesis protein COQ7 LPY96_21030 PF00893 Small Multidrug Resistance protein LPY96_21035 PF02675 S-adenosylmethionine decarboxylase LPY96_21040 PF00027 Cyclic nucleotide-binding domain LPY96_21040 PF00325 Bacterial regulatory proteins, crp family LPY96_21050 PF00218 Indole-3-glycerol phosphate synthase LPY96_21055 PF02885 Glycosyl transferase family, helical bundle domain LPY96_21055 PF00591 Glycosyl transferase family, a/b domain LPY96_21065 PF00117 Glutamine amidotransferase class-I LPY96_21075 PF04715 Anthranilate synthase component I, N terminal region LPY96_21075 PF00425 chorismate binding enzyme LPY96_21080 PF00781 Diacylglycerol kinase catalytic domain LPY96_21085 PF00583 Acetyltransferase (GNAT) family LPY96_21090 PF00834 Ribulose-phosphate 3 epimerase family LPY96_21100 PF05099 Tellurite resistance protein TerB LPY96_21100 PF00226 DnaJ domain LPY96_21105 PF01259 SAICAR synthetase LPY96_21125 PF00182 Chitinase class I LPY96_21130 PF02868 Thermolysin metallopeptidase, alpha-helical domain LPY96_21130 PF01483 Proprotein convertase P-domain LPY96_21130 PF07504 Fungalysin/Thermolysin Propeptide Motif LPY96_21130 PF01447 Thermolysin metallopeptidase, catalytic domain LPY96_21145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LPY96_21145 PF13244 Domain of unknown function (DUF4040) LPY96_21145 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LPY96_21145 PF00361 Proton-conducting membrane transporter LPY96_21150 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LPY96_21155 PF00361 Proton-conducting membrane transporter LPY96_21165 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LPY96_21170 PF03334 Na+/H+ antiporter subunit LPY96_21190 PF04209 homogentisate 1,2-dioxygenase LPY96_21195 PF04480 Protein of unknown function (DUF559) LPY96_21200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LPY96_21205 PF01047 MarR family LPY96_21215 PF00854 POT family LPY96_21220 PF03301 Tryptophan 2,3-dioxygenase LPY96_21230 PF00676 Dehydrogenase E1 component LPY96_21235 PF02779 Transketolase, pyrimidine binding domain LPY96_21235 PF02780 Transketolase, C-terminal domain LPY96_21245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPY96_21245 PF00364 Biotin-requiring enzyme LPY96_21245 PF02817 e3 binding domain LPY96_21255 PF00271 Helicase conserved C-terminal domain LPY96_21255 PF00270 DEAD/DEAH box helicase LPY96_21270 PF00873 AcrB/AcrD/AcrF family LPY96_21285 PF02321 Outer membrane efflux protein LPY96_21290 PF06903 VirK protein LPY96_21305 PF13460 NAD(P)H-binding LPY96_21310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LPY96_21310 PF00128 Alpha amylase, catalytic domain LPY96_21320 PF00128 Alpha amylase, catalytic domain LPY96_21325 PF02446 4-alpha-glucanotransferase LPY96_21335 PF00128 Alpha amylase, catalytic domain LPY96_21335 PF02806 Alpha amylase, C-terminal all-beta domain LPY96_21335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LPY96_21340 PF08323 Starch synthase catalytic domain LPY96_21340 PF00534 Glycosyl transferases group 1 LPY96_21345 PF00990 Diguanylate cyclase, GGDEF domain LPY96_21350 PF05661 Protein of unknown function (DUF808) LPY96_21355 PF03109 ABC1 family LPY96_21360 PF00884 Sulfatase LPY96_21365 PF00924 Mechanosensitive ion channel LPY96_21365 PF12795 Mechanosensitive ion channel porin domain LPY96_21365 PF12794 Mechanosensitive ion channel inner membrane domain 1 LPY96_21385 PF01464 Transglycosylase SLT domain LPY96_21395 PF00263 Bacterial type II and III secretion system protein LPY96_21395 PF03958 Bacterial type II/III secretion system short domain LPY96_21400 PF01311 Bacterial export proteins, family 1 LPY96_21410 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPY96_21410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPY96_21410 PF18269 T3SS EscN ATPase C-terminal domain LPY96_21425 PF01514 Secretory protein of YscJ/FliF family LPY96_21440 PF01312 FlhB HrpN YscU SpaS Family LPY96_21445 PF00771 FHIPEP family LPY96_21460 PF00813 FliP family LPY96_21465 PF01313 Bacterial export proteins, family 3 LPY96_21505 PF05819 NolX protein LPY96_21515 PF01040 UbiA prenyltransferase family LPY96_21525 PF06968 Biotin and Thiamin Synthesis associated domain LPY96_21525 PF04055 Radical SAM superfamily LPY96_21530 PF00155 Aminotransferase class I and II LPY96_21540 PF12697 Alpha/beta hydrolase family LPY96_21550 PF13649 Methyltransferase domain LPY96_21570 PF00291 Pyridoxal-phosphate dependent enzyme LPY96_21580 PF13932 GidA associated domain LPY96_21580 PF01134 Glucose inhibited division protein A LPY96_21585 PF10677 Protein of unknown function (DUF2490) LPY96_21600 PF01614 Bacterial transcriptional regulator LPY96_21600 PF09339 IclR helix-turn-helix domain LPY96_21610 PF02627 Carboxymuconolactone decarboxylase family LPY96_21615 PF12146 Serine aminopeptidase, S33 LPY96_21620 PF00206 Lyase LPY96_21620 PF10397 Adenylosuccinate lyase C-terminus LPY96_21625 PF00775 Dioxygenase LPY96_21625 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LPY96_21635 PF00108 Thiolase, N-terminal domain LPY96_21635 PF02803 Thiolase, C-terminal domain LPY96_21640 PF01144 Coenzyme A transferase LPY96_21645 PF01144 Coenzyme A transferase LPY96_21650 PF00355 Rieske [2Fe-2S] domain LPY96_21655 PF00970 Oxidoreductase FAD-binding domain LPY96_21655 PF00111 2Fe-2S iron-sulfur cluster binding domain LPY96_21660 PF00455 DeoR C terminal sensor domain LPY96_21660 PF08220 DeoR-like helix-turn-helix domain LPY96_21665 PF01266 FAD dependent oxidoreductase LPY96_21665 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LPY96_21670 PF00230 Major intrinsic protein LPY96_21675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LPY96_21675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LPY96_21690 PF01494 FAD binding domain LPY96_21700 PF00171 Aldehyde dehydrogenase family LPY96_21720 PF11871 Domain of unknown function (DUF3391) LPY96_21720 PF01966 HD domain LPY96_21725 PF07690 Major Facilitator Superfamily LPY96_21735 PF00132 Bacterial transferase hexapeptide (six repeats) LPY96_21740 PF03692 Putative zinc- or iron-chelating domain LPY96_21750 PF00920 Dehydratase family LPY96_21755 PF00589 Phage integrase family LPY96_21755 PF13495 Phage integrase, N-terminal SAM-like domain LPY96_21800 PF01638 HxlR-like helix-turn-helix LPY96_21805 PF05368 NmrA-like family LPY96_21815 PF03812 2-keto-3-deoxygluconate permease LPY96_21820 PF01717 Cobalamin-independent synthase, Catalytic domain LPY96_21820 PF08267 Cobalamin-independent synthase, N-terminal domain LPY96_21830 PF03358 NADPH-dependent FMN reductase LPY96_21835 PF03466 LysR substrate binding domain LPY96_21835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_21840 PF02677 Epoxyqueuosine reductase QueH LPY96_21855 PF02321 Outer membrane efflux protein LPY96_21865 PF00529 HlyD membrane-fusion protein of T1SS LPY96_21865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_21870 PF00672 HAMP domain LPY96_21870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_21870 PF00512 His Kinase A (phospho-acceptor) domain LPY96_21875 PF00072 Response regulator receiver domain LPY96_21875 PF00486 Transcriptional regulatory protein, C terminal LPY96_21880 PF00551 Formyl transferase LPY96_21890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LPY96_21890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LPY96_21895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LPY96_21900 PF02146 Sir2 family LPY96_21915 PF07690 Major Facilitator Superfamily LPY96_21955 PF01026 TatD related DNase LPY96_21960 PF03466 LysR substrate binding domain LPY96_21960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_21965 PF00355 Rieske [2Fe-2S] domain LPY96_21970 PF00111 2Fe-2S iron-sulfur cluster binding domain LPY96_21975 PF00860 Permease family LPY96_21985 PF01156 Inosine-uridine preferring nucleoside hydrolase LPY96_21990 PF01425 Amidase LPY96_22005 PF07690 Major Facilitator Superfamily LPY96_22010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_22010 PF03466 LysR substrate binding domain LPY96_22015 PF07687 Peptidase dimerisation domain LPY96_22015 PF01546 Peptidase family M20/M25/M40 LPY96_22020 PF00266 Aminotransferase class-V LPY96_22035 PF09349 OHCU decarboxylase LPY96_22035 PF01014 Uricase LPY96_22040 PF13454 FAD-NAD(P)-binding LPY96_22045 PF00576 HIUase/Transthyretin family LPY96_22050 PF07308 Protein of unknown function (DUF1456) LPY96_22055 PF00270 DEAD/DEAH box helicase LPY96_22055 PF04408 Helicase associated domain (HA2) LPY96_22055 PF00271 Helicase conserved C-terminal domain LPY96_22055 PF08482 ATP-dependent helicase C-terminal LPY96_22065 PF00593 TonB dependent receptor LPY96_22070 PF00849 RNA pseudouridylate synthase LPY96_22080 PF00248 Aldo/keto reductase family LPY96_22085 PF00107 Zinc-binding dehydrogenase LPY96_22085 PF16884 N-terminal domain of oxidoreductase LPY96_22115 PF02566 OsmC-like protein LPY96_22120 PF01047 MarR family LPY96_22125 PF03969 AFG1-like ATPase LPY96_22205 PF02770 Acyl-CoA dehydrogenase, middle domain LPY96_22205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LPY96_22205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LPY96_22210 PF01039 Carboxyl transferase domain LPY96_22215 PF02785 Biotin carboxylase C-terminal domain LPY96_22215 PF00289 Biotin carboxylase, N-terminal domain LPY96_22215 PF18140 Propionyl-coenzyme A carboxylase BT domain LPY96_22215 PF00364 Biotin-requiring enzyme LPY96_22215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPY96_22220 PF00326 Prolyl oligopeptidase family LPY96_22240 PF00990 Diguanylate cyclase, GGDEF domain LPY96_22245 PF00463 Isocitrate lyase family LPY96_22250 PF01274 Malate synthase LPY96_22255 PF03466 LysR substrate binding domain LPY96_22255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_22260 PF00999 Sodium/hydrogen exchanger family LPY96_22285 PF12706 Beta-lactamase superfamily domain LPY96_22290 PF01432 Peptidase family M3 LPY96_22295 PF01112 Asparaginase LPY96_22305 PF00472 RF-1 domain LPY96_22315 PF00849 RNA pseudouridylate synthase LPY96_22325 PF03109 ABC1 family LPY96_22335 PF07478 D-ala D-ala ligase C-terminus LPY96_22335 PF01820 D-ala D-ala ligase N-terminus LPY96_22355 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LPY96_22365 PF00501 AMP-binding enzyme LPY96_22370 PF03692 Putative zinc- or iron-chelating domain LPY96_22375 PF00561 alpha/beta hydrolase fold LPY96_22385 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPY96_22385 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPY96_22400 PF00588 SpoU rRNA Methylase family LPY96_22405 PF07690 Major Facilitator Superfamily LPY96_22420 PF02954 Bacterial regulatory protein, Fis family LPY96_22420 PF00072 Response regulator receiver domain LPY96_22420 PF00158 Sigma-54 interaction domain LPY96_22425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_22430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LPY96_22430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LPY96_22430 PF00205 Thiamine pyrophosphate enzyme, central domain LPY96_22445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LPY96_22445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LPY96_22450 PF02556 Preprotein translocase subunit SecB LPY96_22455 PF00581 Rhodanese-like domain LPY96_22490 PF02803 Thiolase, C-terminal domain LPY96_22490 PF00108 Thiolase, N-terminal domain LPY96_22515 PF00080 Copper/zinc superoxide dismutase (SODC) LPY96_22520 PF00080 Copper/zinc superoxide dismutase (SODC) LPY96_22525 PF02954 Bacterial regulatory protein, Fis family LPY96_22525 PF00072 Response regulator receiver domain LPY96_22525 PF00158 Sigma-54 interaction domain LPY96_22530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_22530 PF00512 His Kinase A (phospho-acceptor) domain LPY96_22530 PF00989 PAS fold LPY96_22535 PF00909 Ammonium Transporter Family LPY96_22540 PF00543 Nitrogen regulatory protein P-II LPY96_22545 PF00120 Glutamine synthetase, catalytic domain LPY96_22545 PF03951 Glutamine synthetase, beta-Grasp domain LPY96_22550 PF02673 Bacitracin resistance protein BacA LPY96_22560 PF01161 Phosphatidylethanolamine-binding protein LPY96_22585 PF03061 Thioesterase superfamily LPY96_22590 PF13091 PLD-like domain LPY96_22605 PF10609 NUBPL iron-transfer P-loop NTPase LPY96_22605 PF01883 Iron-sulfur cluster assembly protein LPY96_22625 PF01381 Helix-turn-helix LPY96_22645 PF03781 Sulfatase-modifying factor enzyme 1 LPY96_22645 PF12867 DinB superfamily LPY96_22655 PF00528 Binding-protein-dependent transport system inner membrane component LPY96_22660 PF00005 ABC transporter LPY96_22675 PF00005 ABC transporter LPY96_22685 PF01734 Patatin-like phospholipase LPY96_22690 PF07715 TonB-dependent Receptor Plug Domain LPY96_22690 PF07660 Secretin and TonB N terminus short domain LPY96_22690 PF00593 TonB dependent receptor LPY96_22695 PF01037 Lrp/AsnC ligand binding domain LPY96_22700 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LPY96_22715 PF00657 GDSL-like Lipase/Acylhydrolase LPY96_22730 PF04962 KduI/IolB family LPY96_22735 PF00356 Bacterial regulatory proteins, lacI family LPY96_22740 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LPY96_22740 PF04616 Glycosyl hydrolases family 43 LPY96_22745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LPY96_22755 PF03480 Bacterial extracellular solute-binding protein, family 7 LPY96_22770 PF00135 Carboxylesterase family LPY96_22775 PF00248 Aldo/keto reductase family LPY96_22780 PF03377 TAL effector repeat LPY96_22810 PF04357 TamB, inner membrane protein subunit of TAM complex LPY96_22815 PF01103 Surface antigen LPY96_22815 PF17243 POTRA domain TamA domain 1 LPY96_22820 PF07715 TonB-dependent Receptor Plug Domain LPY96_22820 PF00593 TonB dependent receptor LPY96_22825 PF13181 Tetratricopeptide repeat LPY96_22835 PF02091 Glycyl-tRNA synthetase alpha subunit LPY96_22840 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPY96_22840 PF00437 Type II/IV secretion system protein LPY96_22850 PF00117 Glutamine amidotransferase class-I LPY96_22850 PF00958 GMP synthase C terminal domain LPY96_22860 PF00902 Sec-independent protein translocase protein (TatC) LPY96_22865 PF02416 mttA/Hcf106 family LPY96_22870 PF02416 mttA/Hcf106 family LPY96_22880 PF00762 Ferrochelatase LPY96_22885 PF12697 Alpha/beta hydrolase family LPY96_22895 PF04381 Putative exonuclease, RdgC LPY96_22900 PF01171 PP-loop family LPY96_22910 PF00356 Bacterial regulatory proteins, lacI family LPY96_22915 PF03648 Glycosyl hydrolase family 67 N-terminus LPY96_22915 PF07477 Glycosyl hydrolase family 67 C-terminus LPY96_22915 PF07488 Glycosyl hydrolase family 67 middle domain LPY96_22925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LPY96_22925 PF13378 Enolase C-terminal domain-like LPY96_22930 PF04616 Glycosyl hydrolases family 43 LPY96_22930 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LPY96_22935 PF14310 Fibronectin type III-like domain LPY96_22935 PF00933 Glycosyl hydrolase family 3 N terminal domain LPY96_22935 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPY96_22935 PF07691 PA14 domain LPY96_22940 PF08125 Mannitol dehydrogenase C-terminal domain LPY96_22940 PF01232 Mannitol dehydrogenase Rossmann domain LPY96_22975 PF00171 Aldehyde dehydrogenase family LPY96_22990 PF00202 Aminotransferase class-III LPY96_23000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LPY96_23000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LPY96_23025 PF16355 Domain of unknown function (DUF4982) LPY96_23025 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LPY96_23025 PF00703 Glycosyl hydrolases family 2 LPY96_23025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LPY96_23025 PF02837 Glycosyl hydrolases family 2, sugar binding domain LPY96_23030 PF02614 Glucuronate isomerase LPY96_23050 PF00331 Glycosyl hydrolase family 10 LPY96_23050 PF00553 Cellulose binding domain LPY96_23050 PF03422 Carbohydrate binding module (family 6) LPY96_23070 PF04616 Glycosyl hydrolases family 43 LPY96_23140 PF00698 Acyl transferase domain LPY96_23140 PF00107 Zinc-binding dehydrogenase LPY96_23140 PF16197 Ketoacyl-synthetase C-terminal extension LPY96_23140 PF00109 Beta-ketoacyl synthase, N-terminal domain LPY96_23140 PF02801 Beta-ketoacyl synthase, C-terminal domain LPY96_23140 PF08659 KR domain LPY96_23140 PF00550 Phosphopantetheine attachment site LPY96_23140 PF14765 Polyketide synthase dehydratase LPY96_23140 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_23145 PF01553 Acyltransferase LPY96_23155 PF00356 Bacterial regulatory proteins, lacI family LPY96_23170 PF04820 Tryptophan halogenase LPY96_23175 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LPY96_23180 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LPY96_23185 PF04337 Protein of unknown function, DUF480 LPY96_23195 PF13302 Acetyltransferase (GNAT) domain LPY96_23200 PF00580 UvrD/REP helicase N-terminal domain LPY96_23200 PF13361 UvrD-like helicase C-terminal domain LPY96_23205 PF00265 Thymidine kinase LPY96_23210 PF00512 His Kinase A (phospho-acceptor) domain LPY96_23210 PF08446 PAS fold LPY96_23210 PF00360 Phytochrome region LPY96_23210 PF01590 GAF domain LPY96_23210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPY96_23215 PF04349 Periplasmic glucan biosynthesis protein, MdoG LPY96_23225 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPY96_23225 PF06827 Zinc finger found in FPG and IleRS LPY96_23225 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPY96_23255 PF03594 Benzoate membrane transport protein LPY96_23260 PF00360 Phytochrome region LPY96_23260 PF13426 PAS domain LPY96_23260 PF08446 PAS fold LPY96_23260 PF01590 GAF domain LPY96_23265 PF01126 Heme oxygenase LPY96_23270 PF07690 Major Facilitator Superfamily LPY96_23275 PF01263 Aldose 1-epimerase LPY96_23285 PF02810 SEC-C motif LPY96_23290 PF01925 Sulfite exporter TauE/SafE LPY96_23310 PF01227 GTP cyclohydrolase I LPY96_23320 PF07869 Protein of unknown function (DUF1656) LPY96_23325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPY96_23325 PF00529 HlyD membrane-fusion protein of T1SS LPY96_23330 PF02321 Outer membrane efflux protein LPY96_23335 PF04632 Fusaric acid resistance protein family LPY96_23340 PF00083 Sugar (and other) transporter LPY96_23345 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family LPY96_23350 PF13396 Phospholipase_D-nuclease N-terminal LPY96_23350 PF13091 PLD-like domain LPY96_23385 PF01850 PIN domain LPY96_23415 PF00849 RNA pseudouridylate synthase LPY96_23425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPY96_23425 PF00289 Biotin carboxylase, N-terminal domain LPY96_23425 PF02785 Biotin carboxylase C-terminal domain LPY96_23430 PF01425 Amidase LPY96_23460 PF13538 UvrD-like helicase C-terminal domain LPY96_23465 PF12705 PD-(D/E)XK nuclease superfamily LPY96_23465 PF00580 UvrD/REP helicase N-terminal domain LPY96_23465 PF13361 UvrD-like helicase C-terminal domain LPY96_23470 PF17946 RecC C-terminal domain LPY96_23485 PF00005 ABC transporter LPY96_23490 PF02405 Permease MlaE LPY96_23495 PF02470 MlaD protein LPY96_23500 PF05494 MlaC protein LPY96_23510 PF04333 MlaA lipoprotein LPY96_23520 PF00255 Glutathione peroxidase LPY96_23530 PF02646 RmuC family LPY96_23535 PF08240 Alcohol dehydrogenase GroES-like domain LPY96_23535 PF00107 Zinc-binding dehydrogenase LPY96_23540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPY96_23540 PF03466 LysR substrate binding domain LPY96_23550 PF13417 Glutathione S-transferase, N-terminal domain LPY96_23550 PF00043 Glutathione S-transferase, C-terminal domain LPY96_23560 PF13520 Amino acid permease LPY96_23570 PF10947 Protein of unknown function (DUF2628) LPY96_23575 PF00990 Diguanylate cyclase, GGDEF domain LPY96_23605 PF10672 S-adenosylmethionine-dependent methyltransferase LPY96_23605 PF17785 PUA-like domain LPY96_23610 PF03741 Integral membrane protein TerC family LPY96_23615 PF01694 Rhomboid family LPY96_23620 PF03009 Glycerophosphoryl diester phosphodiesterase family LPY96_23630 PF01569 PAP2 superfamily LPY96_23635 PF01926 50S ribosome-binding GTPase LPY96_23635 PF12631 MnmE helical domain LPY96_23635 PF10396 GTP-binding protein TrmE N-terminus LPY96_23640 PF01522 Polysaccharide deacetylase LPY96_23645 PF02096 60Kd inner membrane protein LPY96_23645 PF14849 YidC periplasmic domain LPY96_23650 PF00825 Ribonuclease P LPY96_23655 PF00468 Ribosomal protein L34