CIW72_00005 SM00382 ATPases associated with a variety of cellular activities CIW72_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CIW72_00010 SM00480 DNA polymerase III beta subunit CIW72_00020 SM00387 Histidine kinase-like ATPases CIW72_00020 SM00433 TopoisomeraseII CIW72_00035 SM00028 Tetratricopeptide repeats CIW72_00070 SM00155 Phospholipase D. Active site motifs. CIW72_00085 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_00115 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW72_00115 SM00245 tail specific protease CIW72_00170 SM00829 Enoylreductase CIW72_00300 SM00382 ATPases associated with a variety of cellular activities CIW72_00425 SM00487 DEAD-like helicases superfamily CIW72_00425 SM00490 helicase superfamily c-terminal domain CIW72_00450 SM00822 CIW72_00450 CIW72_00455 SM00822 CIW72_00455 CIW72_00700 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CIW72_00725 SM00421 helix_turn_helix, Lux Regulon CIW72_00725 SM00448 cheY-homologous receiver domain CIW72_00745 SM00862 Transcriptional regulatory protein, C terminal CIW72_00800 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_00805 SM00642 Alpha-amylase domain CIW72_00810 SM00642 Alpha-amylase domain CIW72_00815 SM00642 Alpha-amylase domain CIW72_00865 SM00354 helix_turn _helix lactose operon repressor CIW72_00905 SM00344 helix_turn_helix ASNC type CIW72_00925 SM00382 ATPases associated with a variety of cellular activities CIW72_00940 SM00382 ATPases associated with a variety of cellular activities CIW72_00975 SM00530 Helix-turn-helix XRE-family like proteins CIW72_01005 SM00855 Phosphoglycerate mutase family CIW72_01010 SM00867 YceI-like domain CIW72_01015 SM00155 Phospholipase D. Active site motifs. CIW72_01025 SM00563 Phosphate acyltransferases CIW72_01040 SM00028 Tetratricopeptide repeats CIW72_01060 SM01230 CIW72_01060 CIW72_01065 SM00938 Nitrogen regulatory protein P-II CIW72_01075 SM00387 Histidine kinase-like ATPases CIW72_01075 SM00388 His Kinase A (phosphoacceptor) domain CIW72_01080 SM00382 ATPases associated with a variety of cellular activities CIW72_01080 SM00448 cheY-homologous receiver domain CIW72_01140 SM00450 Rhodanese Homology Domain CIW72_01170 SM00387 Histidine kinase-like ATPases CIW72_01170 SM00388 His Kinase A (phosphoacceptor) domain CIW72_01175 SM00382 ATPases associated with a variety of cellular activities CIW72_01175 SM00448 cheY-homologous receiver domain CIW72_01290 SM00563 Phosphate acyltransferases CIW72_01325 SM00342 helix_turn_helix, arabinose operon control protein CIW72_01350 SM00100 Cyclic nucleotide-monophosphate binding domain CIW72_01350 SM00267 diguanylate cyclase CIW72_01375 SM00878 Biotin carboxylase C-terminal domain CIW72_01400 SM00953 CIW72_01400 CIW72_01470 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_01505 SM00829 Enoylreductase CIW72_01535 SM00487 DEAD-like helicases superfamily CIW72_01535 SM00490 helicase superfamily c-terminal domain CIW72_01535 SM00847 Helicase associated domain (HA2) Add an annotation CIW72_01670 SM00422 helix_turn_helix, mercury resistance CIW72_01705 SM00448 cheY-homologous receiver domain CIW72_01705 SM00862 Transcriptional regulatory protein, C terminal CIW72_01710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_01710 SM00387 Histidine kinase-like ATPases CIW72_01710 SM00388 His Kinase A (phosphoacceptor) domain CIW72_01870 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_01875 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_01895 SM00342 helix_turn_helix, arabinose operon control protein CIW72_01925 SM00420 helix_turn_helix, Deoxyribose operon repressor CIW72_01925 SM01134 CIW72_01925 CIW72_01940 SM00882 Coenzyme A transferase CIW72_01945 SM00882 Coenzyme A transferase CIW72_01965 SM00998 Adenylosuccinate lyase C-terminus CIW72_01985 SM00346 helix_turn_helix isocitrate lyase regulation CIW72_01990 SM00090 RIO-like kinase CIW72_02005 SM01228 CIW72_02005 CIW72_02065 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_02065 SM00876 Biotin and Thiamin Synthesis associated domain CIW72_02185 SM00382 ATPases associated with a variety of cellular activities CIW72_02250 SM00267 diguanylate cyclase CIW72_02260 SM00642 Alpha-amylase domain CIW72_02265 SM00642 Alpha-amylase domain CIW72_02275 SM00642 Alpha-amylase domain CIW72_02285 SM00642 Alpha-amylase domain CIW72_02335 SM00822 CIW72_02335 CIW72_02345 SM00487 DEAD-like helicases superfamily CIW72_02345 SM00490 helicase superfamily c-terminal domain CIW72_02355 SM00326 Src homology 3 domains CIW72_02360 SM00861 Transketolase, pyrimidine binding domain CIW72_02390 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_02495 SM00271 DnaJ molecular chaperone homology domain CIW72_02555 SM00493 CIW72_02555 CIW72_02605 SM00046 Diacylglycerol kinase catalytic domain (presumed) CIW72_02625 SM00903 Flavin reductase like domain CIW72_02645 SM00100 Cyclic nucleotide-monophosphate binding domain CIW72_02645 SM00419 helix_turn_helix, cAMP Regulatory protein CIW72_02705 SM00387 Histidine kinase-like ATPases CIW72_02705 SM00388 His Kinase A (phosphoacceptor) domain CIW72_02705 SM00448 cheY-homologous receiver domain CIW72_02710 SM00052 Putative diguanylate phosphodiesterase CIW72_02710 SM00267 diguanylate cyclase CIW72_02710 SM00448 cheY-homologous receiver domain CIW72_02770 SM00563 Phosphate acyltransferases CIW72_02795 SM01209 CIW72_02795 CIW72_02795 SM01210 CIW72_02795 CIW72_02805 SM00798 AICARFT/IMPCHase bienzyme CIW72_02805 SM00851 MGS-like domain CIW72_02820 SM00195 Dual specificity phosphatase, catalytic domain CIW72_02840 SM00563 Phosphate acyltransferases CIW72_02865 SM00530 Helix-turn-helix XRE-family like proteins CIW72_02895 SM00878 Biotin carboxylase C-terminal domain CIW72_02925 SM00342 helix_turn_helix, arabinose operon control protein CIW72_02935 SM00234 in StAR and phosphatidylcholine transfer protein CIW72_02965 SM00883 Chaperonin 10 Kd subunit CIW72_03025 SM00944 Pro-kumamolisin, activation domain CIW72_03040 SM00867 YceI-like domain CIW72_03095 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CIW72_03105 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_03105 SM00895 CIW72_03105 CIW72_03125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_03125 SM00331 Sigma factor PP2C-like phosphatases CIW72_03185 SM00342 helix_turn_helix, arabinose operon control protein CIW72_03255 SM00267 diguanylate cyclase CIW72_03285 SM00062 Bacterial periplasmic substrate-binding proteins CIW72_03350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_03360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_03360 SM00091 PAS domain CIW72_03360 SM00267 diguanylate cyclase CIW72_03365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_03365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_03365 SM01049 CIW72_03365 CIW72_03370 SM00637 CIW72_03370 CIW72_03380 SM00267 diguanylate cyclase CIW72_03415 SM00448 cheY-homologous receiver domain CIW72_03415 SM00850 LytTr DNA-binding domain CIW72_03500 SM00382 ATPases associated with a variety of cellular activities CIW72_03500 SM01086 C-terminal, D2-small domain, of ClpB protein CIW72_03530 SM00267 diguanylate cyclase CIW72_03535 SM01263 CIW72_03535 CIW72_03555 SM00564 beta-propeller repeat CIW72_03560 SM00062 Bacterial periplasmic substrate-binding proteins CIW72_03560 SM00248 ankyrin repeats CIW72_03575 SM00829 Enoylreductase CIW72_03585 SM00382 ATPases associated with a variety of cellular activities CIW72_03595 SM00268 Actin CIW72_03620 SM00710 Parallel beta-helix repeats CIW72_03640 SM00936 Penicillin-binding protein 5, C-terminal domain CIW72_03660 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_03665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW72_03665 SM00245 tail specific protease CIW72_03720 SM01350 CIW72_03720 CIW72_03730 SM00749 bacterial OsmY and nodulation domain CIW72_03735 SM00387 Histidine kinase-like ATPases CIW72_03735 SM00388 His Kinase A (phosphoacceptor) domain CIW72_03740 SM00448 cheY-homologous receiver domain CIW72_03745 SM00387 Histidine kinase-like ATPases CIW72_03745 SM00388 His Kinase A (phosphoacceptor) domain CIW72_03745 SM00448 cheY-homologous receiver domain CIW72_03805 SM00382 ATPases associated with a variety of cellular activities CIW72_03875 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_03875 SM00866 CIW72_03875 CIW72_03885 SM00354 helix_turn _helix lactose operon repressor CIW72_03955 SM00849 Metallo-beta-lactamase superfamily CIW72_03960 SM00342 helix_turn_helix, arabinose operon control protein CIW72_03975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_03975 SM00387 Histidine kinase-like ATPases CIW72_03975 SM00388 His Kinase A (phosphoacceptor) domain CIW72_03980 SM00448 cheY-homologous receiver domain CIW72_03980 SM00862 Transcriptional regulatory protein, C terminal CIW72_04000 SM00829 Enoylreductase CIW72_04020 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_04040 SM00382 ATPases associated with a variety of cellular activities CIW72_04135 SM00387 Histidine kinase-like ATPases CIW72_04135 SM00388 His Kinase A (phosphoacceptor) domain CIW72_04140 SM00448 cheY-homologous receiver domain CIW72_04140 SM00862 Transcriptional regulatory protein, C terminal CIW72_04260 SM00842 Cell division protein FtsA CIW72_04265 SM00864 Tubulin/FtsZ family, GTPase domain CIW72_04265 SM00865 Tubulin/FtsZ family, C-terminal domain CIW72_04285 SM00957 SecA DEAD-like domain CIW72_04285 SM00958 SecA preprotein cross-linking domain CIW72_04315 SM00829 Enoylreductase CIW72_04320 SM00944 Pro-kumamolisin, activation domain CIW72_04340 SM00642 Alpha-amylase domain CIW72_04375 SM00996 S-adenosyl-L-homocysteine hydrolase CIW72_04375 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CIW72_04500 SM00382 ATPases associated with a variety of cellular activities CIW72_04520 SM00382 ATPases associated with a variety of cellular activities CIW72_04530 SM00448 cheY-homologous receiver domain CIW72_04530 SM00862 Transcriptional regulatory protein, C terminal CIW72_04535 SM00387 Histidine kinase-like ATPases CIW72_04535 SM00388 His Kinase A (phosphoacceptor) domain CIW72_04590 SM00382 ATPases associated with a variety of cellular activities CIW72_04600 SM00382 ATPases associated with a variety of cellular activities CIW72_04675 SM00650 Ribosomal RNA adenine dimethylases CIW72_04700 SM00108 Bulb-type mannose-specific lectin CIW72_04755 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_04755 SM00895 CIW72_04755 CIW72_04790 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_04870 SM00448 cheY-homologous receiver domain CIW72_04875 SM00387 Histidine kinase-like ATPases CIW72_04875 SM00388 His Kinase A (phosphoacceptor) domain CIW72_04875 SM00448 cheY-homologous receiver domain CIW72_04880 SM00421 helix_turn_helix, Lux Regulon CIW72_04950 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CIW72_04950 SM00475 5'-3' exonuclease CIW72_04980 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CIW72_04980 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CIW72_05090 SM00852 Probable molybdopterin binding domain CIW72_05095 SM00028 Tetratricopeptide repeats CIW72_05100 SM00937 CIW72_05100 CIW72_05110 SM00028 Tetratricopeptide repeats CIW72_05130 SM01400 CIW72_05130 CIW72_05180 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CIW72_05180 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CIW72_05185 SM00649 Ribosomal protein L11/L12 CIW72_05210 SM00663 RNA polymerase I subunit A N-terminus CIW72_05225 SM00838 Elongation factor G C-terminus CIW72_05225 SM00889 Elongation factor G, domain IV CIW72_05235 SM01403 CIW72_05235 CIW72_05255 SM01382 CIW72_05255 CIW72_05255 SM01383 CIW72_05255 CIW72_05270 SM00322 K homology RNA-binding domain CIW72_05290 SM01374 CIW72_05290 CIW72_05295 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CIW72_05355 SM00363 S4 RNA-binding domain CIW72_05355 SM01390 CIW72_05355 CIW72_05360 SM00662 RNA polymerases D CIW72_05410 SM00838 Elongation factor G C-terminus CIW72_05460 SM00829 Enoylreductase CIW72_05510 SM00382 ATPases associated with a variety of cellular activities CIW72_05520 SM00829 Enoylreductase CIW72_05550 SM00855 Phosphoglycerate mutase family CIW72_05600 SM00014 Acid phosphatase homologues CIW72_05620 SM00091 PAS domain CIW72_05620 SM00387 Histidine kinase-like ATPases CIW72_05620 SM00388 His Kinase A (phosphoacceptor) domain CIW72_05625 SM00448 cheY-homologous receiver domain CIW72_05625 SM00862 Transcriptional regulatory protein, C terminal CIW72_05645 SM01329 CIW72_05645 CIW72_05770 SM00642 Alpha-amylase domain CIW72_05785 SM00448 cheY-homologous receiver domain CIW72_05785 SM00862 Transcriptional regulatory protein, C terminal CIW72_05790 SM00387 Histidine kinase-like ATPases CIW72_05790 SM00388 His Kinase A (phosphoacceptor) domain CIW72_05880 SM00382 ATPases associated with a variety of cellular activities CIW72_05880 SM00448 cheY-homologous receiver domain CIW72_05885 SM00387 Histidine kinase-like ATPases CIW72_05885 SM00388 His Kinase A (phosphoacceptor) domain CIW72_05895 SM00881 CoA binding domain CIW72_05945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_05955 SM00564 beta-propeller repeat CIW72_06045 SM00382 ATPases associated with a variety of cellular activities CIW72_06050 SM00382 ATPases associated with a variety of cellular activities CIW72_06050 SM01086 C-terminal, D2-small domain, of ClpB protein CIW72_06100 SM00855 Phosphoglycerate mutase family CIW72_06205 SM00382 ATPases associated with a variety of cellular activities CIW72_06255 SM00834 Putative regulatory protein CIW72_06290 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CIW72_06305 SM00382 ATPases associated with a variety of cellular activities CIW72_06360 SM00091 PAS domain CIW72_06360 SM00911 HWE histidine kinase CIW72_06365 SM00448 cheY-homologous receiver domain CIW72_06380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_06380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_06405 SM00448 cheY-homologous receiver domain CIW72_06415 SM00341 Helicase and RNase D C-terminal CIW72_06415 SM00487 DEAD-like helicases superfamily CIW72_06415 SM00490 helicase superfamily c-terminal domain CIW72_06415 SM00956 CIW72_06415 CIW72_06430 SM00382 ATPases associated with a variety of cellular activities CIW72_06430 SM00487 DEAD-like helicases superfamily CIW72_06430 SM00490 helicase superfamily c-terminal domain CIW72_06430 SM00847 Helicase associated domain (HA2) Add an annotation CIW72_06485 SM00954 Region found in RelA / SpoT proteins CIW72_06515 SM00491 CIW72_06515 CIW72_06540 SM00448 cheY-homologous receiver domain CIW72_06545 SM00448 cheY-homologous receiver domain CIW72_06550 SM00260 Two component signalling adaptor domain CIW72_06555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_06560 SM00073 Histidine Phosphotransfer domain CIW72_06560 SM00260 Two component signalling adaptor domain CIW72_06560 SM00387 Histidine kinase-like ATPases CIW72_06560 SM00448 cheY-homologous receiver domain CIW72_06560 SM01231 CIW72_06560 CIW72_06570 SM00260 Two component signalling adaptor domain CIW72_06605 SM00369 Leucine-rich repeats, typical (most populated) subfamily CIW72_06645 SM01149 CIW72_06645 CIW72_06670 SM00758 CIW72_06670 CIW72_06670 SM01217 CIW72_06670 CIW72_06685 SM00636 CIW72_06685 CIW72_06690 SM00812 Alpha-L-fucosidase CIW72_06830 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_06890 SM00867 YceI-like domain CIW72_06900 SM00867 YceI-like domain CIW72_06905 SM00387 Histidine kinase-like ATPases CIW72_06905 SM00388 His Kinase A (phosphoacceptor) domain CIW72_06905 SM00448 cheY-homologous receiver domain CIW72_06915 SM00387 Histidine kinase-like ATPases CIW72_06915 SM00388 His Kinase A (phosphoacceptor) domain CIW72_06915 SM00448 cheY-homologous receiver domain CIW72_06920 SM00387 Histidine kinase-like ATPases CIW72_06920 SM00388 His Kinase A (phosphoacceptor) domain CIW72_06920 SM00448 cheY-homologous receiver domain CIW72_07000 SM00422 helix_turn_helix, mercury resistance CIW72_07025 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CIW72_07035 SM00849 Metallo-beta-lactamase superfamily CIW72_07080 SM00421 helix_turn_helix, Lux Regulon CIW72_07100 SM00656 CIW72_07100 CIW72_07140 SM00924 MgtE intracellular N domain CIW72_07190 SM00382 ATPases associated with a variety of cellular activities CIW72_07210 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_07305 SM00054 EF-hand, calcium binding motif CIW72_07335 SM00671 Sel1-like repeats. CIW72_07340 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CIW72_07370 SM00382 ATPases associated with a variety of cellular activities CIW72_07385 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain CIW72_07415 SM00411 bacterial (prokaryotic) histone like domain CIW72_07430 SM00382 ATPases associated with a variety of cellular activities CIW72_07465 SM00732 Likely ribonuclease with RNase H fold. CIW72_07535 SM00267 diguanylate cyclase CIW72_07540 SM00829 Enoylreductase CIW72_07550 SM01092 CO dehydrogenase flavoprotein C-terminal domain CIW72_07555 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CIW72_07590 SM00248 ankyrin repeats CIW72_07645 SM00855 Phosphoglycerate mutase family CIW72_07660 SM00155 Phospholipase D. Active site motifs. CIW72_07665 SM00448 cheY-homologous receiver domain CIW72_07670 SM00138 Methyltransferase, chemotaxis proteins CIW72_07675 SM00052 Putative diguanylate phosphodiesterase CIW72_07675 SM00448 cheY-homologous receiver domain CIW72_07680 SM00260 Two component signalling adaptor domain CIW72_07685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_07685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_07690 SM00073 Histidine Phosphotransfer domain CIW72_07690 SM00260 Two component signalling adaptor domain CIW72_07690 SM00387 Histidine kinase-like ATPases CIW72_07690 SM01231 CIW72_07690 CIW72_07735 SM00487 DEAD-like helicases superfamily CIW72_07735 SM00490 helicase superfamily c-terminal domain CIW72_07735 SM00982 CIW72_07735 CIW72_07735 SM01058 CarD-like/TRCF domain CIW72_07750 SM00448 cheY-homologous receiver domain CIW72_07750 SM00862 Transcriptional regulatory protein, C terminal CIW72_07755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_07755 SM00387 Histidine kinase-like ATPases CIW72_07755 SM00388 His Kinase A (phosphoacceptor) domain CIW72_07760 SM00645 Papain family cysteine protease CIW72_07840 SM00342 helix_turn_helix, arabinose operon control protein CIW72_07930 SM00342 helix_turn_helix, arabinose operon control protein CIW72_07930 SM00478 endonuclease III CIW72_07930 SM01009 AlkA N-terminal domain CIW72_07975 SM00487 DEAD-like helicases superfamily CIW72_07975 SM00490 helicase superfamily c-terminal domain CIW72_07980 SM00052 Putative diguanylate phosphodiesterase CIW72_07980 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_07980 SM00091 PAS domain CIW72_07980 SM00267 diguanylate cyclase CIW72_07985 SM00363 S4 RNA-binding domain CIW72_07990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_07990 SM00267 diguanylate cyclase CIW72_08030 SM00448 cheY-homologous receiver domain CIW72_08030 SM00862 Transcriptional regulatory protein, C terminal CIW72_08065 SM00382 ATPases associated with a variety of cellular activities CIW72_08200 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_08235 SM01351 CIW72_08235 CIW72_08250 SM00977 TilS substrate C-terminal domain CIW72_08260 SM00098 Alkaline phosphatase homologues CIW72_08315 SM01160 CIW72_08315 CIW72_08445 SM00257 Lysin motif CIW72_08475 SM00859 Semialdehyde dehydrogenase, NAD binding domain CIW72_08545 SM00052 Putative diguanylate phosphodiesterase CIW72_08545 SM00267 diguanylate cyclase CIW72_08545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_08605 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CIW72_08610 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CIW72_08660 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_08660 SM00322 K homology RNA-binding domain CIW72_08680 SM01387 CIW72_08680 CIW72_08685 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_08685 SM00322 K homology RNA-binding domain CIW72_08705 SM01001 AIR carboxylase CIW72_08725 SM00822 CIW72_08725 CIW72_08790 SM00487 DEAD-like helicases superfamily CIW72_08790 SM00490 helicase superfamily c-terminal domain CIW72_08855 SM00382 ATPases associated with a variety of cellular activities CIW72_08895 SM00642 Alpha-amylase domain CIW72_08925 SM00642 Alpha-amylase domain CIW72_08930 SM00354 helix_turn _helix lactose operon repressor CIW72_08935 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CIW72_08960 SM00873 B3/4 domain CIW72_08960 SM00874 tRNA synthetase B5 domain CIW72_08960 SM00896 Ferredoxin-fold anticodon binding domain CIW72_08965 SM00411 bacterial (prokaryotic) histone like domain CIW72_08970 SM00422 helix_turn_helix, mercury resistance CIW72_09055 SM00849 Metallo-beta-lactamase superfamily CIW72_09080 SM00861 Transketolase, pyrimidine binding domain CIW72_09085 SM00507 HNH nucleases CIW72_09120 SM00465 GIY-YIG type nucleases (URI domain) CIW72_09140 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_09140 SM00091 PAS domain CIW72_09140 SM00387 Histidine kinase-like ATPases CIW72_09140 SM00388 His Kinase A (phosphoacceptor) domain CIW72_09140 SM00448 cheY-homologous receiver domain CIW72_09150 SM00478 endonuclease III CIW72_09160 SM00382 ATPases associated with a variety of cellular activities CIW72_09160 SM00962 SRP54-type protein, GTPase domain CIW72_09160 SM00963 SRP54-type protein, helical bundle domain CIW72_09165 SM00342 helix_turn_helix, arabinose operon control protein CIW72_09190 SM01130 CIW72_09190 CIW72_09310 SM00387 Histidine kinase-like ATPases CIW72_09385 SM00344 helix_turn_helix ASNC type CIW72_09400 SM01323 CIW72_09400 CIW72_09450 SM00354 helix_turn _helix lactose operon repressor CIW72_09490 SM00448 cheY-homologous receiver domain CIW72_09490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_09495 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_09495 SM00091 PAS domain CIW72_09495 SM00387 Histidine kinase-like ATPases CIW72_09495 SM00388 His Kinase A (phosphoacceptor) domain CIW72_09495 SM00448 cheY-homologous receiver domain CIW72_09495 SM01079 CIW72_09495 CIW72_09555 SM00267 diguanylate cyclase CIW72_09555 SM00448 cheY-homologous receiver domain CIW72_09565 SM01230 CIW72_09565 CIW72_09575 SM01230 CIW72_09575 CIW72_09605 SM00382 ATPases associated with a variety of cellular activities CIW72_09635 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_09635 SM01091 Transporter associated domain CIW72_09660 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_09725 SM00487 DEAD-like helicases superfamily CIW72_09725 SM00490 helicase superfamily c-terminal domain CIW72_09735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_09735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_09755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_09755 SM00267 diguanylate cyclase CIW72_09765 SM00528 Domain in histone-like proteins of HNS family CIW72_09780 SM00474 3'-5' exonuclease CIW72_09825 SM00646 CIW72_09825 CIW72_09830 SM00853 MutL C terminal dimerisation domain CIW72_09830 SM01340 CIW72_09830 CIW72_09855 SM00822 CIW72_09855 CIW72_09870 SM00052 Putative diguanylate phosphodiesterase CIW72_09870 SM00267 diguanylate cyclase CIW72_09880 SM01322 CIW72_09880 CIW72_09885 SM00357 Cold shock protein domain CIW72_09910 SM00487 DEAD-like helicases superfamily CIW72_09910 SM00490 helicase superfamily c-terminal domain CIW72_09915 SM00382 ATPases associated with a variety of cellular activities CIW72_09955 SM00052 Putative diguanylate phosphodiesterase CIW72_09955 SM00267 diguanylate cyclase CIW72_09955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_09965 SM00841 Elongation factor P, C-terminal CIW72_09965 SM01185 CIW72_09965 CIW72_10005 SM00656 CIW72_10005 CIW72_10035 SM00849 Metallo-beta-lactamase superfamily CIW72_10080 SM01234 CIW72_10080 CIW72_10100 SM00840 CIW72_10100 CIW72_10140 SM00859 Semialdehyde dehydrogenase, NAD binding domain CIW72_10155 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CIW72_10170 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CIW72_10200 SM00382 ATPases associated with a variety of cellular activities CIW72_10205 SM00382 ATPases associated with a variety of cellular activities CIW72_10210 SM00357 Cold shock protein domain CIW72_10260 SM00382 ATPases associated with a variety of cellular activities CIW72_10285 SM00363 S4 RNA-binding domain CIW72_10310 SM00354 helix_turn _helix lactose operon repressor CIW72_10390 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_10395 SM00411 bacterial (prokaryotic) histone like domain CIW72_10405 SM00028 Tetratricopeptide repeats CIW72_10415 SM00822 CIW72_10415 CIW72_10440 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_10440 SM01240 CIW72_10440 CIW72_10500 SM00829 Enoylreductase CIW72_10520 SM00849 Metallo-beta-lactamase superfamily CIW72_10585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_10590 SM00421 helix_turn_helix, Lux Regulon CIW72_10590 SM00448 cheY-homologous receiver domain CIW72_10600 SM00342 helix_turn_helix, arabinose operon control protein CIW72_10635 SM00529 Helix-turn-helix diphteria tox regulatory element CIW72_10645 SM00479 CIW72_10645 CIW72_10715 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_10715 SM00732 Likely ribonuclease with RNase H fold. CIW72_10725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_10725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_10725 SM00091 PAS domain CIW72_10725 SM00387 Histidine kinase-like ATPases CIW72_10725 SM00388 His Kinase A (phosphoacceptor) domain CIW72_10725 SM00448 cheY-homologous receiver domain CIW72_10730 SM00448 cheY-homologous receiver domain CIW72_10845 SM00382 ATPases associated with a variety of cellular activities CIW72_10900 SM00382 ATPases associated with a variety of cellular activities CIW72_10910 SM00849 Metallo-beta-lactamase superfamily CIW72_10925 SM00382 ATPases associated with a variety of cellular activities CIW72_10940 SM00226 Low molecular weight phosphatase family CIW72_10950 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CIW72_10950 SM00465 GIY-YIG type nucleases (URI domain) CIW72_10990 SM00073 Histidine Phosphotransfer domain CIW72_10990 SM00260 Two component signalling adaptor domain CIW72_10990 SM00387 Histidine kinase-like ATPases CIW72_10990 SM01231 CIW72_10990 CIW72_11000 SM00448 cheY-homologous receiver domain CIW72_11015 SM00382 ATPases associated with a variety of cellular activities CIW72_11015 SM00962 SRP54-type protein, GTPase domain CIW72_11030 SM00052 Putative diguanylate phosphodiesterase CIW72_11030 SM00267 diguanylate cyclase CIW72_11035 SM00267 diguanylate cyclase CIW72_11060 SM00670 Large family of predicted nucleotide-binding domains CIW72_11070 SM00857 Resolvase, N terminal domain CIW72_11125 SM00382 ATPases associated with a variety of cellular activities CIW72_11185 SM00822 CIW72_11185 CIW72_11210 SM00382 ATPases associated with a variety of cellular activities CIW72_11215 SM00448 cheY-homologous receiver domain CIW72_11225 SM00421 helix_turn_helix, Lux Regulon CIW72_11225 SM00448 cheY-homologous receiver domain CIW72_11265 SM00047 Lysozyme subfamily 2 CIW72_11320 SM00260 Two component signalling adaptor domain CIW72_11320 SM00448 cheY-homologous receiver domain CIW72_11325 SM00858 CIW72_11325 CIW72_11340 SM00387 Histidine kinase-like ATPases CIW72_11345 SM00052 Putative diguanylate phosphodiesterase CIW72_11345 SM00267 diguanylate cyclase CIW72_11345 SM00448 cheY-homologous receiver domain CIW72_11350 SM00091 PAS domain CIW72_11350 SM00387 Histidine kinase-like ATPases CIW72_11355 SM00052 Putative diguanylate phosphodiesterase CIW72_11355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_11355 SM00091 PAS domain CIW72_11355 SM00267 diguanylate cyclase CIW72_11365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_11390 SM00382 ATPases associated with a variety of cellular activities CIW72_11390 SM01086 C-terminal, D2-small domain, of ClpB protein CIW72_11395 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_11415 SM00382 ATPases associated with a variety of cellular activities CIW72_11415 SM00843 CIW72_11415 CIW72_11435 SM00382 ATPases associated with a variety of cellular activities CIW72_11465 SM00562 CIW72_11465 CIW72_11475 SM00028 Tetratricopeptide repeats CIW72_11490 SM00564 beta-propeller repeat CIW72_11495 SM00382 ATPases associated with a variety of cellular activities CIW72_11500 SM00852 Probable molybdopterin binding domain CIW72_11505 SM00450 Rhodanese Homology Domain CIW72_11630 SM01126 CIW72_11630 CIW72_11670 SM00852 Probable molybdopterin binding domain CIW72_11730 SM00052 Putative diguanylate phosphodiesterase CIW72_11735 SM00869 Autotransporter beta-domain CIW72_11740 SM00421 helix_turn_helix, Lux Regulon CIW72_11740 SM00448 cheY-homologous receiver domain CIW72_11745 SM00387 Histidine kinase-like ATPases CIW72_11745 SM00388 His Kinase A (phosphoacceptor) domain CIW72_11770 SM00869 Autotransporter beta-domain CIW72_11785 SM00448 cheY-homologous receiver domain CIW72_11785 SM00850 LytTr DNA-binding domain CIW72_12110 SM00363 S4 RNA-binding domain CIW72_12115 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_12120 SM00421 helix_turn_helix, Lux Regulon CIW72_12120 SM00448 cheY-homologous receiver domain CIW72_12125 SM00450 Rhodanese Homology Domain CIW72_12145 SM00984 UDP binding domain CIW72_12160 SM00823 Phosphopantetheine attachment site CIW72_12160 SM00824 Thioesterase CIW72_12230 SM00260 Two component signalling adaptor domain CIW72_12240 SM00448 cheY-homologous receiver domain CIW72_12245 SM00073 Histidine Phosphotransfer domain CIW72_12245 SM00260 Two component signalling adaptor domain CIW72_12245 SM00387 Histidine kinase-like ATPases CIW72_12245 SM01231 CIW72_12245 CIW72_12250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12260 SM01049 CIW72_12260 CIW72_12265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12340 SM00260 Two component signalling adaptor domain CIW72_12350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_12350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_12355 SM00138 Methyltransferase, chemotaxis proteins CIW72_12365 SM00448 cheY-homologous receiver domain CIW72_12370 SM00052 Putative diguanylate phosphodiesterase CIW72_12370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_12370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_12370 SM00091 PAS domain CIW72_12370 SM00267 diguanylate cyclase CIW72_12390 SM00966 SpoVT / AbrB like domain CIW72_12415 SM00073 Histidine Phosphotransfer domain CIW72_12415 SM00387 Histidine kinase-like ATPases CIW72_12415 SM00388 His Kinase A (phosphoacceptor) domain CIW72_12415 SM00448 cheY-homologous receiver domain CIW72_12420 SM00448 cheY-homologous receiver domain CIW72_12420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_12430 SM00937 CIW72_12430 CIW72_12435 SM00850 LytTr DNA-binding domain CIW72_12490 SM00060 Fibronectin type 3 domain CIW72_12510 SM00851 MGS-like domain CIW72_12510 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CIW72_12520 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CIW72_12555 SM00899 CIW72_12555 CIW72_12575 SM00822 CIW72_12575 CIW72_12580 SM00841 Elongation factor P, C-terminal CIW72_12580 SM01185 CIW72_12580 CIW72_12625 SM01007 Class II Aldolase and Adducin N-terminal domain CIW72_12700 SM00100 Cyclic nucleotide-monophosphate binding domain CIW72_12700 SM00419 helix_turn_helix, cAMP Regulatory protein CIW72_12785 SM00912 haemagglutination activity domain CIW72_13010 SM00014 Acid phosphatase homologues CIW72_13025 SM00387 Histidine kinase-like ATPases CIW72_13030 SM00448 cheY-homologous receiver domain CIW72_13045 SM00052 Putative diguanylate phosphodiesterase CIW72_13045 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_13045 SM00267 diguanylate cyclase CIW72_13125 SM00646 CIW72_13125 CIW72_13165 SM00758 CIW72_13165 CIW72_13210 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW72_13235 SM01130 CIW72_13235 CIW72_13255 SM00670 Large family of predicted nucleotide-binding domains CIW72_13320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_13320 SM00091 PAS domain CIW72_13320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_13340 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CIW72_13355 SM00382 ATPases associated with a variety of cellular activities CIW72_13395 SM00382 ATPases associated with a variety of cellular activities CIW72_13405 SM01103 CIW72_13405 CIW72_13415 SM00257 Lysin motif CIW72_13435 SM00463 Small MutS-related domain CIW72_13460 SM01192 CIW72_13460 CIW72_13460 SM01193 CIW72_13460 CIW72_13485 SM00387 Histidine kinase-like ATPases CIW72_13485 SM00433 TopoisomeraseII CIW72_13515 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_13515 SM01091 Transporter associated domain CIW72_13540 SM00382 ATPases associated with a variety of cellular activities CIW72_13550 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_13685 SM01126 CIW72_13685 CIW72_13755 SM00091 PAS domain CIW72_13755 SM00387 Histidine kinase-like ATPases CIW72_13755 SM00388 His Kinase A (phosphoacceptor) domain CIW72_13755 SM00448 cheY-homologous receiver domain CIW72_13765 SM00448 cheY-homologous receiver domain CIW72_13780 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_13790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_13790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_13835 SM00830 Chorismate mutase type II CIW72_13855 SM00240 Forkhead associated domain CIW72_13875 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_13875 SM00866 CIW72_13875 CIW72_13915 SM00564 beta-propeller repeat CIW72_13920 SM00434 DNA Topoisomerase IV CIW72_13945 SM00292 breast cancer carboxy-terminal domain CIW72_13945 SM00532 Ligase N family CIW72_13960 SM00771 ZipA, C-terminal domain (FtsZ-binding) CIW72_13965 SM00968 SMC proteins Flexible Hinge Domain CIW72_14035 SM00421 helix_turn_helix, Lux Regulon CIW72_14035 SM00448 cheY-homologous receiver domain CIW72_14090 SM00947 Carbonic anhydrase CIW72_14115 SM00479 CIW72_14115 CIW72_14145 SM00981 CIW72_14145 CIW72_14155 SM00382 ATPases associated with a variety of cellular activities CIW72_14175 SM00644 CIW72_14175 CIW72_14185 SM00450 Rhodanese Homology Domain CIW72_14210 SM00478 endonuclease III CIW72_14220 SM00947 Carbonic anhydrase CIW72_14255 SM00382 ATPases associated with a variety of cellular activities CIW72_14270 SM00479 CIW72_14270 CIW72_14275 SM00267 diguanylate cyclase CIW72_14280 SM00967 RNA 2'-O ribose methyltransferase substrate binding CIW72_14290 SM00316 Ribosomal protein S1-like RNA-binding domain CIW72_14290 SM00357 Cold shock protein domain CIW72_14290 SM00955 CIW72_14290 CIW72_14335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CIW72_14365 SM00354 helix_turn _helix lactose operon repressor CIW72_14385 SM00984 UDP binding domain CIW72_14405 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_14410 SM00382 ATPases associated with a variety of cellular activities CIW72_14440 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_14440 SM01091 Transporter associated domain CIW72_14460 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CIW72_14470 SM00861 Transketolase, pyrimidine binding domain CIW72_14495 SM00382 ATPases associated with a variety of cellular activities CIW72_14540 SM00271 DnaJ molecular chaperone homology domain CIW72_14640 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_14640 SM00267 diguanylate cyclase CIW72_14650 SM00267 diguanylate cyclase CIW72_14770 SM00357 Cold shock protein domain CIW72_14785 SM00947 Carbonic anhydrase CIW72_14800 SM00382 ATPases associated with a variety of cellular activities CIW72_14825 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_14855 SM00631 CIW72_14855 CIW72_14860 SM01217 CIW72_14860 CIW72_14885 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_14895 SM00434 DNA Topoisomerase IV CIW72_14925 SM00710 Parallel beta-helix repeats CIW72_14925 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CIW72_14930 SM01172 CIW72_14930 CIW72_14950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_14960 SM00972 Spore Coat Protein U domain CIW72_14975 SM00972 Spore Coat Protein U domain CIW72_15000 SM00267 diguanylate cyclase CIW72_15030 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW72_15070 SM00481 DNA polymerase alpha chain like domain CIW72_15155 SM00382 ATPases associated with a variety of cellular activities CIW72_15355 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CIW72_15360 SM00869 Autotransporter beta-domain CIW72_15385 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_15385 SM00267 diguanylate cyclase CIW72_15415 SM00487 DEAD-like helicases superfamily CIW72_15415 SM00490 helicase superfamily c-terminal domain CIW72_15430 SM00357 Cold shock protein domain CIW72_15465 SM01118 CIW72_15465 CIW72_15475 SM00448 cheY-homologous receiver domain CIW72_15490 SM00358 Double-stranded RNA binding motif CIW72_15490 SM00535 Ribonuclease III family CIW72_15505 SM00838 Elongation factor G C-terminus CIW72_15510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW72_15560 SM00530 Helix-turn-helix XRE-family like proteins CIW72_15595 SM00812 Alpha-L-fucosidase CIW72_15635 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CIW72_15635 SM00534 ATPase domain of DNA mismatch repair MUTS family CIW72_15700 SM00382 ATPases associated with a variety of cellular activities CIW72_15700 SM00962 SRP54-type protein, GTPase domain CIW72_15700 SM00963 SRP54-type protein, helical bundle domain CIW72_15715 SM00813 Alpha-L-arabinofuranosidase C-terminus CIW72_15725 SM00448 cheY-homologous receiver domain CIW72_15730 SM00091 PAS domain CIW72_15730 SM00387 Histidine kinase-like ATPases CIW72_15730 SM00388 His Kinase A (phosphoacceptor) domain CIW72_15735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_15735 SM00387 Histidine kinase-like ATPases CIW72_15735 SM00388 His Kinase A (phosphoacceptor) domain CIW72_15735 SM00448 cheY-homologous receiver domain CIW72_15740 SM00138 Methyltransferase, chemotaxis proteins CIW72_15750 SM00387 Histidine kinase-like ATPases CIW72_15750 SM00388 His Kinase A (phosphoacceptor) domain CIW72_15750 SM00448 cheY-homologous receiver domain CIW72_15775 SM00387 Histidine kinase-like ATPases CIW72_15775 SM00388 His Kinase A (phosphoacceptor) domain CIW72_15775 SM00448 cheY-homologous receiver domain CIW72_15780 SM00387 Histidine kinase-like ATPases CIW72_15780 SM00388 His Kinase A (phosphoacceptor) domain CIW72_15820 SM00342 helix_turn_helix, arabinose operon control protein CIW72_15825 SM00862 Transcriptional regulatory protein, C terminal CIW72_15835 SM00382 ATPases associated with a variety of cellular activities CIW72_15840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW72_16005 SM00904 Riboflavin kinase CIW72_16095 SM00244 prohibitin homologues CIW72_16125 SM00478 endonuclease III CIW72_16140 SM00421 helix_turn_helix, Lux Regulon CIW72_16140 SM00448 cheY-homologous receiver domain CIW72_16180 SM00387 Histidine kinase-like ATPases CIW72_16180 SM00388 His Kinase A (phosphoacceptor) domain CIW72_16185 SM00448 cheY-homologous receiver domain CIW72_16185 SM00862 Transcriptional regulatory protein, C terminal CIW72_16235 SM01060 CIW72_16235 CIW72_16270 SM00091 PAS domain CIW72_16270 SM00342 helix_turn_helix, arabinose operon control protein CIW72_16315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_16330 SM00481 DNA polymerase alpha chain like domain CIW72_16350 SM00966 SpoVT / AbrB like domain CIW72_16370 SM00974 CIW72_16370 CIW72_16385 SM01092 CO dehydrogenase flavoprotein C-terminal domain CIW72_16400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_16405 SM00052 Putative diguanylate phosphodiesterase CIW72_16485 SM00487 DEAD-like helicases superfamily CIW72_16485 SM00490 helicase superfamily c-terminal domain CIW72_16515 SM00822 CIW72_16515 CIW72_16530 SM00788 Adenylosuccinate synthetase CIW72_16535 SM01321 CIW72_16535 CIW72_16540 SM00244 prohibitin homologues CIW72_16545 SM00244 prohibitin homologues CIW72_16550 SM00448 cheY-homologous receiver domain CIW72_16555 SM00271 DnaJ molecular chaperone homology domain CIW72_16640 SM00382 ATPases associated with a variety of cellular activities CIW72_16675 SM00825 Beta-ketoacyl synthase CIW72_16685 SM00822 CIW72_16685 CIW72_16690 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CIW72_16735 SM00382 ATPases associated with a variety of cellular activities CIW72_16745 SM00460 Transglutaminase/protease-like homologues CIW72_16760 SM00493 CIW72_16760 CIW72_16770 SM00382 ATPases associated with a variety of cellular activities CIW72_16800 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_16805 SM00849 Metallo-beta-lactamase superfamily CIW72_16830 SM00331 Sigma factor PP2C-like phosphatases CIW72_16830 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CIW72_16835 SM00479 CIW72_16835 CIW72_16850 SM00849 Metallo-beta-lactamase superfamily CIW72_16855 SM00257 Lysin motif CIW72_16880 SM00411 bacterial (prokaryotic) histone like domain CIW72_16885 SM00382 ATPases associated with a variety of cellular activities CIW72_16885 SM00464 Found in ATP-dependent protease La (LON) CIW72_16890 SM00382 ATPases associated with a variety of cellular activities CIW72_16890 SM00994 ClpX C4-type zinc finger CIW72_16890 SM01086 C-terminal, D2-small domain, of ClpB protein CIW72_16910 SM00091 PAS domain CIW72_16910 SM00387 Histidine kinase-like ATPases CIW72_16950 SM00530 Helix-turn-helix XRE-family like proteins CIW72_16980 SM00327 von Willebrand factor (vWF) type A domain CIW72_17035 SM00248 ankyrin repeats CIW72_17080 SM00528 Domain in histone-like proteins of HNS family CIW72_17095 SM00869 Autotransporter beta-domain CIW72_17155 SM00354 helix_turn _helix lactose operon repressor CIW72_17185 SM00967 RNA 2'-O ribose methyltransferase substrate binding CIW72_17265 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_17265 SM00387 Histidine kinase-like ATPases CIW72_17300 SM00506 Appr-1"-p processing enzyme CIW72_17350 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CIW72_17375 SM00849 Metallo-beta-lactamase superfamily CIW72_17390 SM00382 ATPases associated with a variety of cellular activities CIW72_17455 SM00861 Transketolase, pyrimidine binding domain CIW72_17475 SM00028 Tetratricopeptide repeats CIW72_17475 SM00327 von Willebrand factor (vWF) type A domain CIW72_17480 SM00327 von Willebrand factor (vWF) type A domain CIW72_17495 SM00382 ATPases associated with a variety of cellular activities CIW72_17505 SM00965 Secretin and TonB N terminus short domain CIW72_17555 SM00487 DEAD-like helicases superfamily CIW72_17555 SM00490 helicase superfamily c-terminal domain CIW72_17565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CIW72_17565 SM00954 Region found in RelA / SpoT proteins CIW72_17570 SM01409 CIW72_17570 CIW72_17575 SM00072 Guanylate kinase homologues. CIW72_17600 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_17625 SM01011 Aminopeptidase P, N-terminal domain CIW72_17700 SM00028 Tetratricopeptide repeats CIW72_17700 SM00382 ATPases associated with a variety of cellular activities CIW72_17700 SM00421 helix_turn_helix, Lux Regulon CIW72_17770 SM00464 Found in ATP-dependent protease La (LON) CIW72_17820 SM00342 helix_turn_helix, arabinose operon control protein CIW72_17825 SM00862 Transcriptional regulatory protein, C terminal CIW72_17845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CIW72_17875 SM00917 LeuA allosteric (dimerisation) domain CIW72_17880 SM01329 CIW72_17880 CIW72_17900 SM00267 diguanylate cyclase CIW72_17955 SM00919 Malic enzyme, NAD binding domain CIW72_17955 SM01274 CIW72_17955 CIW72_17975 SM00387 Histidine kinase-like ATPases CIW72_17975 SM00388 His Kinase A (phosphoacceptor) domain CIW72_17975 SM00448 cheY-homologous receiver domain CIW72_18010 SM00421 helix_turn_helix, Lux Regulon CIW72_18010 SM00448 cheY-homologous receiver domain CIW72_18020 SM00387 Histidine kinase-like ATPases CIW72_18020 SM00388 His Kinase A (phosphoacceptor) domain CIW72_18025 SM00448 cheY-homologous receiver domain CIW72_18025 SM00862 Transcriptional regulatory protein, C terminal CIW72_18045 SM00822 CIW72_18045 CIW72_18050 SM00354 helix_turn _helix lactose operon repressor CIW72_18065 SM00642 Alpha-amylase domain CIW72_18075 SM01154 CIW72_18075 CIW72_18125 SM00382 ATPases associated with a variety of cellular activities CIW72_18160 SM00450 Rhodanese Homology Domain CIW72_18240 SM00028 Tetratricopeptide repeats CIW72_18325 SM00345 helix_turn_helix gluconate operon transcriptional repressor CIW72_18325 SM00866 CIW72_18325 CIW72_18390 SM00382 ATPases associated with a variety of cellular activities CIW72_18415 SM01211 CIW72_18415 CIW72_18500 SM00656 CIW72_18500 CIW72_18530 SM00528 Domain in histone-like proteins of HNS family CIW72_18545 SM00382 ATPases associated with a variety of cellular activities CIW72_18570 SM00882 Coenzyme A transferase CIW72_18575 SM00882 Coenzyme A transferase CIW72_18590 SM00984 UDP binding domain CIW72_18615 SM00893 Electron transfer flavoprotein domain CIW72_18620 SM00893 Electron transfer flavoprotein domain CIW72_18680 SM00382 ATPases associated with a variety of cellular activities CIW72_18705 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_18745 SM00487 DEAD-like helicases superfamily CIW72_18745 SM00490 helicase superfamily c-terminal domain CIW72_18780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_18815 SM00825 Beta-ketoacyl synthase CIW72_18885 SM00382 ATPases associated with a variety of cellular activities CIW72_18905 SM00382 ATPases associated with a variety of cellular activities CIW72_18905 SM00448 cheY-homologous receiver domain CIW72_18910 SM00387 Histidine kinase-like ATPases CIW72_18925 SM00830 Chorismate mutase type II CIW72_18935 SM00382 ATPases associated with a variety of cellular activities CIW72_19005 SM00986 Uracil DNA glycosylase superfamily CIW72_19005 SM00987 UreE urease accessory protein, C-terminal domain CIW72_19040 SM00382 ATPases associated with a variety of cellular activities CIW72_19040 SM00930 CIW72_19040 CIW72_19060 SM00387 Histidine kinase-like ATPases CIW72_19060 SM00388 His Kinase A (phosphoacceptor) domain CIW72_19060 SM00448 cheY-homologous receiver domain CIW72_19115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CIW72_19115 SM00091 PAS domain CIW72_19115 SM00387 Histidine kinase-like ATPases CIW72_19115 SM00388 His Kinase A (phosphoacceptor) domain CIW72_19115 SM00448 cheY-homologous receiver domain CIW72_19135 SM01005 Alanine racemase, C-terminal domain CIW72_19145 SM00344 helix_turn_helix ASNC type CIW72_19205 SM00382 ATPases associated with a variety of cellular activities CIW72_19220 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CIW72_19225 SM00986 Uracil DNA glycosylase superfamily CIW72_19225 SM00987 UreE urease accessory protein, C-terminal domain CIW72_19230 SM00729 Elongator protein 3, MiaB family, Radical SAM CIW72_19300 SM00448 cheY-homologous receiver domain CIW72_19300 SM00850 LytTr DNA-binding domain CIW72_19305 SM00387 Histidine kinase-like ATPases CIW72_19355 SM00091 PAS domain CIW72_19355 SM00138 Methyltransferase, chemotaxis proteins CIW72_19355 SM00911 HWE histidine kinase CIW72_19360 SM00448 cheY-homologous receiver domain CIW72_19370 SM00382 ATPases associated with a variety of cellular activities CIW72_19370 SM00448 cheY-homologous receiver domain CIW72_19430 SM00382 ATPases associated with a variety of cellular activities CIW72_19505 SM00382 ATPases associated with a variety of cellular activities CIW72_19510 SM00631 CIW72_19510 CIW72_19685 SM00257 Lysin motif CIW72_19710 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CIW72_19710 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CIW72_19710 SM00493 CIW72_19710 CIW72_19770 SM00487 DEAD-like helicases superfamily CIW72_19770 SM00490 helicase superfamily c-terminal domain CIW72_19805 SM00986 Uracil DNA glycosylase superfamily CIW72_19805 SM00987 UreE urease accessory protein, C-terminal domain CIW72_19810 SM00448 cheY-homologous receiver domain CIW72_19820 SM00382 ATPases associated with a variety of cellular activities CIW72_19825 SM00487 DEAD-like helicases superfamily CIW72_19825 SM00490 helicase superfamily c-terminal domain CIW72_19835 SM00357 Cold shock protein domain CIW72_19835 SM00382 ATPases associated with a variety of cellular activities CIW72_19835 SM00959 Rho termination factor, N-terminal domain CIW72_19870 SM00257 Lysin motif CIW72_19900 SM01150 CIW72_19900 CIW72_19955 SM00644 CIW72_19955 CIW72_19965 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW72_20000 SM01217 CIW72_20000 CIW72_20005 SM00905 Dihydroneopterin aldolase CIW72_20035 SM00400 zinc finger CIW72_20035 SM00493 CIW72_20035 CIW72_20035 SM00766 DNA primase DnaG DnaB-binding CIW72_20140 SM00363 S4 RNA-binding domain CIW72_20185 SM00470 ParB-like nuclease domain CIW72_20210 SM01259 CIW72_20210 CIW72_20240 SM00836 DALR anticodon binding domain CIW72_20240 SM01016 Arginyl tRNA synthetase N terminal dom CIW72_20310 SM00938 Nitrogen regulatory protein P-II CIW72_20320 SM00382 ATPases associated with a variety of cellular activities CIW72_20335 SM00052 Putative diguanylate phosphodiesterase CIW72_20370 SM00244 prohibitin homologues CIW72_20415 SM00448 cheY-homologous receiver domain CIW72_20415 SM00862 Transcriptional regulatory protein, C terminal CIW72_20420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CIW72_20420 SM00387 Histidine kinase-like ATPases CIW72_20420 SM00388 His Kinase A (phosphoacceptor) domain CIW72_20450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CIW72_20495 SM01060 CIW72_20495 CIW72_20510 SM00421 helix_turn_helix, Lux Regulon CIW72_20510 SM00448 cheY-homologous receiver domain CIW72_20525 SM00382 ATPases associated with a variety of cellular activities CIW72_20570 SM00849 Metallo-beta-lactamase superfamily CIW72_20600 SM00960 Roadblock/LC7 domain CIW72_20720 SM00387 Histidine kinase-like ATPases CIW72_20720 SM00388 His Kinase A (phosphoacceptor) domain CIW72_20725 SM00448 cheY-homologous receiver domain CIW72_20725 SM00862 Transcriptional regulatory protein, C terminal CIW72_20750 SM00248 ankyrin repeats CIW72_20755 SM01060 CIW72_20755 CIW72_20765 SM00491 CIW72_20765 CIW72_20795 SM00477 DNA/RNA non-specific endonuclease CIW72_20795 SM00892 DNA/RNA non-specific endonuclease CIW72_20815 SM01004 Delta-aminolevulinic acid dehydratase CIW72_20865 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CIW72_20885 SM00382 ATPases associated with a variety of cellular activities CIW72_20895 SM00530 Helix-turn-helix XRE-family like proteins CIW72_20935 SM00342 helix_turn_helix, arabinose operon control protein CIW72_20945 SM00382 ATPases associated with a variety of cellular activities CIW72_21025 SM00116 Domain in cystathionine beta-synthase and other proteins. CIW72_21025 SM00924 MgtE intracellular N domain CIW72_21035 SM01057 Eukaryotic-type carbonic anhydrase CIW72_21060 SM00248 ankyrin repeats CIW72_21070 SM00825 Beta-ketoacyl synthase CIW72_21095 SM00822 CIW72_21095 CIW72_21145 SM00563 Phosphate acyltransferases CIW72_21215 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CIW72_21215 SM00474 3'-5' exonuclease CIW72_21215 SM00475 5'-3' exonuclease CIW72_21215 SM00482 DNA polymerase A domain CIW72_21230 SM00912 haemagglutination activity domain CIW72_21250 SM00331 Sigma factor PP2C-like phosphatases CIW72_21250 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CIW72_21275 SM00240 Forkhead associated domain CIW72_21290 SM00028 Tetratricopeptide repeats CIW72_21335 SM00915 Jacalin-like lectin domain CIW72_21360 SM00382 ATPases associated with a variety of cellular activities CIW72_21360 SM01086 C-terminal, D2-small domain, of ClpB protein CIW72_21400 SM00342 helix_turn_helix, arabinose operon control protein CIW72_21410 SM01266 CIW72_21410 CIW72_21435 SM00155 Phospholipase D. Active site motifs. CIW72_21580 SM00421 helix_turn_helix, Lux Regulon CIW72_21580 SM00448 cheY-homologous receiver domain CIW72_21640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW72_21655 SM00346 helix_turn_helix isocitrate lyase regulation CIW72_21670 SM00091 PAS domain CIW72_21670 SM00387 Histidine kinase-like ATPases CIW72_21670 SM00388 His Kinase A (phosphoacceptor) domain CIW72_21670 SM00448 cheY-homologous receiver domain CIW72_21705 SM00564 beta-propeller repeat CIW72_21755 SM00836 DALR anticodon binding domain CIW72_21765 SM00382 ATPases associated with a variety of cellular activities CIW72_21855 SM00354 helix_turn _helix lactose operon repressor CIW72_21870 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CIW72_21880 SM00758 CIW72_21880 CIW72_21880 SM01217 CIW72_21880 CIW72_21940 SM01007 Class II Aldolase and Adducin N-terminal domain CIW72_21970 SM00633 Glycosyl hydrolase family 10 CIW72_21995 SM00633 Glycosyl hydrolase family 10 CIW72_22045 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_22045 SM00388 His Kinase A (phosphoacceptor) domain CIW72_22085 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CIW72_22105 SM00354 helix_turn _helix lactose operon repressor CIW72_22120 SM00563 Phosphate acyltransferases CIW72_22125 SM00829 Enoylreductase CIW72_22135 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CIW72_22135 SM01232 CIW72_22135 CIW72_22170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_22170 SM00091 PAS domain CIW72_22225 SM00347 helix_turn_helix multiple antibiotic resistance protein CIW72_22260 SM00155 Phospholipase D. Active site motifs. CIW72_22290 SM01126 CIW72_22290 CIW72_22345 SM00382 ATPases associated with a variety of cellular activities CIW72_22395 SM00829 Enoylreductase CIW72_22445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CIW72_22445 SM00091 PAS domain CIW72_22445 SM00267 diguanylate cyclase CIW72_22465 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CIW72_22500 SM00014 Acid phosphatase homologues CIW72_22510 SM00028 Tetratricopeptide repeats CIW72_22630 SM00857 Resolvase, N terminal domain CIW72_22705 SM00857 Resolvase, N terminal domain CIW72_22735 SM00857 Resolvase, N terminal domain CIW72_22755 SM00857 Resolvase, N terminal domain CIW72_22765 SM00670 Large family of predicted nucleotide-binding domains CIW72_22805 SM00857 Resolvase, N terminal domain CIW72_22985 SM00670 Large family of predicted nucleotide-binding domains CIW72_22995 SM00857 Resolvase, N terminal domain CIW72_23030 SM00857 Resolvase, N terminal domain CIW72_23040 SM00670 Large family of predicted nucleotide-binding domains