locus-tag	class	description
BGK55_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BGK55_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BGK55_00020	COG0187	DNA topoisomerase II activity
BGK55_00030	COG0501	Belongs to the peptidase M48B family
BGK55_00060	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BGK55_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BGK55_00115	COG0793	Belongs to the peptidase S41A family
BGK55_00120	COG4942	peptidase
BGK55_00130	COG2234	aminopeptidase activity
BGK55_00140	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BGK55_00150	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BGK55_00155	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BGK55_00160	COG1064	alcohol dehydrogenase
BGK55_00165	COG0493	'glutamate synthase
BGK55_00170	COG0067	glutamate synthase
BGK55_00170	COG0070	glutamate synthase
BGK55_00170	COG0069	glutamate synthase activity
BGK55_00215	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BGK55_00230	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
BGK55_00235	COG0297	glycogen (starch) synthase activity
BGK55_00235	COG0438	transferase activity, transferring glycosyl groups
BGK55_00255	COG0367	asparagine synthase
BGK55_00285	COG1132	(ABC) transporter
BGK55_00315	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BGK55_00405	COG1111	helicase
BGK55_00405	COG1205	dead DEAH box helicase
BGK55_00410	COG1272	protein, Hemolysin III
BGK55_00430	COG0300	oxidoreductase activity
BGK55_00435	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_00450	COG2249	NAD(P)H dehydrogenase (quinone) activity
BGK55_00475	COG3237	CsbD-like
BGK55_00525	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BGK55_00575	COG0714	Associated with various cellular activities
BGK55_00605	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BGK55_00615	COG4772	TonB-dependent receptor
BGK55_00680	COG1304	FMN binding
BGK55_00690	COG4585	Histidine kinase
BGK55_00695	COG2197	response regulator
BGK55_00715	COG3710	Transcriptional regulator
BGK55_00720	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BGK55_00770	COG0366	Alpha amylase catalytic
BGK55_00775	COG0366	Alpha amylase catalytic
BGK55_00780	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BGK55_00800	COG0657	acetylesterase activity
BGK55_00800	COG2755	lipolytic protein G-D-S-L family
BGK55_00810	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BGK55_00825	COG3507	Belongs to the glycosyl hydrolase 43 family
BGK55_00830	COG1609	Transcriptional regulator
BGK55_00835	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BGK55_00840	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_00850	COG2755	lipolytic protein G-D-S-L family
BGK55_00865	COG3186	Phenylalanine-4-hydroxylase
BGK55_00870	COG1522	sequence-specific DNA binding
BGK55_00880	COG1752	Esterase of the alpha-beta hydrolase superfamily
BGK55_00890	COG1119	ATPase activity
BGK55_00905	COG1125	glycine betaine transport
BGK55_00920	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BGK55_00940	COG1396	sequence-specific DNA binding
BGK55_00965	COG0489	protein tyrosine kinase activity
BGK55_00970	COG2062	phosphohistidine phosphatase, SixA
BGK55_00980	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BGK55_01010	COG1881	PFAM PEBP family protein
BGK55_01020	COG1968	undecaprenyl-diphosphatase activity
BGK55_01025	COG0174	glutamine synthetase
BGK55_01030	COG0347	Belongs to the P(II) protein family
BGK55_01035	COG0004	ammonium transporteR
BGK55_01040	COG3852	Histidine kinase
BGK55_01045	COG2204	response regulator
BGK55_01050	COG2032	superoxide dismutase activity
BGK55_01055	COG2032	superoxide dismutase activity
BGK55_01070	COG0183	Belongs to the thiolase family
BGK55_01105	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BGK55_01110	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BGK55_01115	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BGK55_01130	COG0028	Belongs to the TPP enzyme family
BGK55_01135	COG2205	protein histidine kinase activity
BGK55_01160	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BGK55_01175	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BGK55_01185	COG0596	Alpha beta hydrolase
BGK55_01195	COG0318	PFAM AMP-dependent synthetase and ligase
BGK55_01205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BGK55_01220	COG1181	Belongs to the D-alanine--D-alanine ligase family
BGK55_01230	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BGK55_01240	COG0564	pseudouridine synthase activity
BGK55_01260	COG1446	asparaginase
BGK55_01265	COG0339	signal peptide processing
BGK55_01295	COG0475	glutathione-regulated potassium exporter activity
BGK55_01305	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BGK55_01310	COG2224	Isocitrate lyase
BGK55_01315	COG3706	GGDEF domain
BGK55_01345	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BGK55_01350	COG1960	acyl-CoA dehydrogenase activity
BGK55_01425	COG0697	spore germination
BGK55_01435	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BGK55_01440	COG1846	Transcriptional regulator
BGK55_01445	COG1764	response to oxidative stress
BGK55_01475	COG2130	NADP-dependent
BGK55_01490	COG1187	pseudouridine synthase activity
BGK55_01505	COG1643	Atp-dependent helicase
BGK55_01510	COG4807	Protein conserved in bacteria
BGK55_01515	COG2351	hydroxyisourate hydrolase activity
BGK55_01520	COG2072	flavoprotein involved in K transport
BGK55_01540	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BGK55_01575	COG1957	nucleoside hydrolase
BGK55_01585	COG2252	PERMEase
BGK55_01605	COG0084	hydrolase, TatD family'
BGK55_01620	COG0583	DNA-binding transcription factor activity
BGK55_01625	COG2814	Major facilitator Superfamily
BGK55_01640	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BGK55_01645	COG1902	pentaerythritol trinitrate reductase activity
BGK55_01665	COG0745	RESPONSE REGULATOR receiver
BGK55_01670	COG2205	protein histidine kinase activity
BGK55_01675	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_01685	COG1538	Outer membrane efflux protein
BGK55_01700	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BGK55_01705	COG0583	DNA-binding transcription factor activity
BGK55_01740	COG0702	epimerase
BGK55_01745	COG1733	regulation of RNA biosynthetic process
BGK55_01795	COG0129	dihydroxy-acid dehydratase activity
BGK55_01815	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BGK55_01870	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BGK55_01875	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BGK55_01900	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BGK55_01905	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BGK55_01920	COG3485	protocatechuate 3,4-dioxygenase
BGK55_01935	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BGK55_01940	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BGK55_01950	COG1414	Transcriptional regulator
BGK55_01970	COG0445	tRNA wobble uridine modification
BGK55_02005	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_02010	COG2267	carboxylic ester hydrolase activity
BGK55_02020	COG0156	8-amino-7-oxononanoate synthase activity
BGK55_02025	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BGK55_02030	COG1040	competence protein
BGK55_02035	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BGK55_02105	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BGK55_02180	COG3264	Mechanosensitive ion channel
BGK55_02180	COG1511	domain protein
BGK55_02185	COG1368	sulfuric ester hydrolase activity
BGK55_02190	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BGK55_02195	COG2354	Protein conserved in bacteria
BGK55_02200	COG0745	RESPONSE REGULATOR receiver
BGK55_02200	COG3706	GGDEF domain
BGK55_02205	COG0297	glycogen (starch) synthase activity
BGK55_02210	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BGK55_02215	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BGK55_02240	COG0702	epimerase
BGK55_02245	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_02285	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_02295	COG0513	Belongs to the DEAD box helicase family
BGK55_02300	COG0508	dehydrogenase complex catalyzes the overall conversion of
BGK55_02315	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BGK55_02325	COG3483	tryptophan 2,3-dioxygenase activity
BGK55_02330	COG3104	oligopeptide transport
BGK55_02350	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BGK55_02365	COG1320	monovalent cation:proton antiporter activity
BGK55_02370	COG2212	antiporter activity
BGK55_02380	COG0651	ATP synthesis coupled electron transport
BGK55_02385	COG1006	Multisubunit Na H antiporter MnhC subunit
BGK55_02390	COG2111	Na H antiporter
BGK55_02390	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BGK55_02410	COG3179	chitinase
BGK55_02430	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BGK55_02435	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BGK55_02450	COG0456	acetyltransferase
BGK55_02455	COG0582	viral genome integration into host DNA
BGK55_02545	COG1597	lipid kinase activity
BGK55_02570	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BGK55_02575	COG0134	indole-3-glycerol-phosphate synthase activity
BGK55_02590	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BGK55_02595	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BGK55_02605	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BGK55_02610	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BGK55_02615	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BGK55_02630	COG1051	belongs to the nudix hydrolase family
BGK55_02670	COG0316	Belongs to the HesB IscA family
BGK55_02690	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BGK55_02705	COG2814	Major facilitator Superfamily
BGK55_02715	COG2814	Major facilitator Superfamily
BGK55_02720	COG1289	transmembrane transporter activity
BGK55_02730	COG0151	Belongs to the GarS family
BGK55_02740	COG0138	bifunctional purine biosynthesis protein purh
BGK55_02745	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BGK55_02750	COG2267	carboxylic ester hydrolase activity
BGK55_02755	COG2453	phosphatase
BGK55_02755	COG0671	phosphoesterase, PA-phosphatase related
BGK55_02785	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BGK55_02810	COG2264	protein methyltransferase activity
BGK55_02825	COG0439	Biotin carboxylase
BGK55_02835	COG0511	ligase activity, forming carbon-carbon bonds
BGK55_02840	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BGK55_02850	COG1324	tolerance protein
BGK55_02875	COG0300	oxidoreductase activity
BGK55_02880	COG2356	endonuclease I
BGK55_02890	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BGK55_02895	COG0459	protein refolding
BGK55_02910	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BGK55_02925	COG3386	PFAM SMP-30 Gluconolaconase
BGK55_02935	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BGK55_02940	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BGK55_02960	COG0778	Nitroreductase
BGK55_02965	COG2353	YceI-like domain
BGK55_02995	COG3052	prosthetic group binding
BGK55_03015	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BGK55_03020	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BGK55_03030	COG1802	Transcriptional regulator
BGK55_03035	COG0546	phosphoglycolate phosphatase activity
BGK55_03105	COG4221	oxidoreductase activity
BGK55_03115	COG0435	Glutathione S-transferase
BGK55_03140	COG2409	Drug exporters of the RND superfamily
BGK55_03145	COG0823	Involved in the tonB-independent uptake of proteins
BGK55_03145	COG1506	peptidase
BGK55_03155	COG3706	GGDEF domain
BGK55_03175	COG0697	spore germination
BGK55_03190	COG1113	amino acid transport
BGK55_03200	COG0598	Magnesium transport protein CorA
BGK55_03210	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BGK55_03250	COG5001	Diguanylate cyclase
BGK55_03255	COG0840	transmembrane signaling receptor activity
BGK55_03260	COG5297	Belongs to the glycosyl hydrolase family 6
BGK55_03260	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BGK55_03265	COG0659	secondary active sulfate transmembrane transporter activity
BGK55_03270	COG3706	GGDEF domain
BGK55_03285	COG2943	transferase activity, transferring hexosyl groups
BGK55_03295	COG3275	phosphorelay sensor kinase activity
BGK55_03305	COG0181	hydroxymethylbilane synthase activity
BGK55_03330	COG1505	serine-type exopeptidase activity
BGK55_03340	COG0436	Aminotransferase
BGK55_03350	COG2832	Protein of unknown function (DUF454)
BGK55_03360	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BGK55_03370	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BGK55_03375	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BGK55_03380	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BGK55_03405	COG2226	methyltransferase
BGK55_03410	COG2199	diguanylate cyclase activity
BGK55_03415	COG0308	aminopeptidase N
BGK55_03455	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BGK55_03465	COG3284	Transcriptional regulator
BGK55_03475	COG1077	Cell shape determining protein MreB Mrl
BGK55_03480	COG1792	Involved in formation and maintenance of cell shape
BGK55_03495	COG0772	Belongs to the SEDS family
BGK55_03505	COG2951	lytic endotransglycosylase activity
BGK55_03510	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BGK55_03520	COG1686	Belongs to the peptidase S11 family
BGK55_03530	COG2921	Belongs to the UPF0250 family
BGK55_03535	COG0321	lipoyl(octanoyl) transferase activity
BGK55_03540	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BGK55_03555	COG0583	DNA-binding transcription factor activity
BGK55_03565	COG1056	cytidyltransferase-related domain
BGK55_03565	COG1051	belongs to the nudix hydrolase family
BGK55_03600	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BGK55_03605	COG0673	inositol 2-dehydrogenase activity
BGK55_03610	COG2823	Periplasmic or secreted lipoprotein
BGK55_03615	COG4251	negative regulation of phosphorylation
BGK55_03620	COG0784	Response regulator, receiver
BGK55_03625	COG4191	Histidine kinase
BGK55_03630	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BGK55_03685	COG1459	type II secretion system
BGK55_03705	COG4795	General secretion pathway protein
BGK55_03735	COG3250	beta-galactosidase activity
BGK55_03760	COG1609	Transcriptional regulator
BGK55_03765	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BGK55_03770	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BGK55_03780	COG0617	tRNA 3'-terminal CCA addition
BGK55_03785	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BGK55_03790	COG1012	belongs to the aldehyde dehydrogenase family
BGK55_03795	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BGK55_03810	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BGK55_03825	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BGK55_03830	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BGK55_03845	COG2205	protein histidine kinase activity
BGK55_03850	COG0745	RESPONSE REGULATOR receiver
BGK55_03875	COG3791	Glutathione-dependent formaldehyde-activating
BGK55_03890	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BGK55_03900	COG0697	spore germination
BGK55_03910	COG0488	(ABC) transporter
BGK55_03920	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BGK55_03925	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BGK55_03935	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BGK55_03935	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BGK55_03955	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BGK55_03960	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BGK55_03965	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BGK55_03985	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BGK55_03990	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BGK55_03995	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
BGK55_04000	COG2205	protein histidine kinase activity
BGK55_04005	COG0745	RESPONSE REGULATOR receiver
BGK55_04020	COG0277	FAD linked oxidase domain protein
BGK55_04025	COG1988	membrane-bound metal-dependent
BGK55_04030	COG0792	nuclease activity
BGK55_04060	COG2001	Belongs to the MraZ family
BGK55_04065	COG0275	rRNA processing
BGK55_04070	COG3116	cell division
BGK55_04080	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BGK55_04085	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BGK55_04090	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BGK55_04100	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BGK55_04105	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BGK55_04110	COG1181	Belongs to the D-alanine--D-alanine ligase family
BGK55_04115	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BGK55_04130	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BGK55_04140	COG0739	heme binding
BGK55_04145	COG0653	protein targeting
BGK55_04150	COG0494	nUDIX hydrolase
BGK55_04160	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BGK55_04170	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_04170	COG3321	synthase
BGK55_04170	COG0604	alcohol dehydrogenase
BGK55_04195	COG0366	Alpha amylase catalytic
BGK55_04220	COG2226	methyltransferase
BGK55_04225	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BGK55_04235	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BGK55_04270	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BGK55_04280	COG4106	trans-aconitate 2-methyltransferase activity
BGK55_04285	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BGK55_04295	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BGK55_04300	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BGK55_04305	COG0667	Aldo Keto reductase
BGK55_04315	COG4771	TonB-dependent receptor
BGK55_04335	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BGK55_04340	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BGK55_04350	COG2175	clavaminate synthase activity
BGK55_04360	COG4181	ATPase activity
BGK55_04375	COG0642	Histidine kinase
BGK55_04390	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BGK55_04410	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BGK55_04415	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BGK55_04430	COG3829	transcription factor binding
BGK55_04440	COG1116	anion transmembrane transporter activity
BGK55_04445	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BGK55_04455	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BGK55_04460	COG0431	NADPH-dependent FMN reductase
BGK55_04485	COG0747	negative chemotaxis
BGK55_04505	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BGK55_04510	COG2967	ApaG domain
BGK55_04515	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BGK55_04520	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BGK55_04525	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BGK55_04530	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BGK55_04540	COG0123	including yeast histone deacetylase and acetoin utilization protein
BGK55_04545	COG2096	Adenosyltransferase
BGK55_04555	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BGK55_04560	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BGK55_04600	COG3384	dioxygenase
BGK55_04605	COG0583	DNA-binding transcription factor activity
BGK55_04610	COG0318	PFAM AMP-dependent synthetase and ligase
BGK55_04620	COG1024	Enoyl-CoA hydratase
BGK55_04640	COG3386	PFAM SMP-30 Gluconolaconase
BGK55_04685	COG0697	spore germination
BGK55_04695	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BGK55_04710	COG3706	GGDEF domain
BGK55_04710	COG0745	RESPONSE REGULATOR receiver
BGK55_04720	COG2197	response regulator
BGK55_04730	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BGK55_04740	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BGK55_04745	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BGK55_04750	COG0583	DNA-binding transcription factor activity
BGK55_04755	COG3634	alkyl hydroperoxide reductase activity
BGK55_04765	COG2890	protein-(glutamine-N5) methyltransferase activity
BGK55_04785	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BGK55_04785	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BGK55_04815	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BGK55_04835	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BGK55_04840	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BGK55_04855	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BGK55_04870	COG1404	Belongs to the peptidase S8 family
BGK55_04875	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BGK55_04900	COG1295	ribonuclease BN
BGK55_04905	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BGK55_04910	COG1254	Belongs to the acylphosphatase family
BGK55_04925	COG0521	Mo-molybdopterin cofactor biosynthetic process
BGK55_04935	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BGK55_04940	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BGK55_04950	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BGK55_04955	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BGK55_04965	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BGK55_04970	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BGK55_04975	COG0193	aminoacyl-tRNA hydrolase activity
BGK55_04980	COG0012	GTP binding
BGK55_05000	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BGK55_05010	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BGK55_05015	COG0250	Participates in transcription elongation, termination and antitermination
BGK55_05020	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BGK55_05025	COG0081	regulation of translation
BGK55_05030	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BGK55_05035	COG0222	ribosome binding
BGK55_05040	COG0085	RNA polymerase activity
BGK55_05045	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BGK55_05050	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BGK55_05055	COG0049	tRNA binding
BGK55_05060	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BGK55_05065	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BGK55_05070	COG0051	transcription antitermination factor activity, RNA binding
BGK55_05075	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BGK55_05080	COG0088	Forms part of the polypeptide exit tunnel
BGK55_05085	COG0089	rRNA binding
BGK55_05090	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BGK55_05095	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BGK55_05100	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BGK55_05105	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BGK55_05110	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BGK55_05115	COG0255	Belongs to the universal ribosomal protein uL29 family
BGK55_05120	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BGK55_05125	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BGK55_05130	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BGK55_05135	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BGK55_05140	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BGK55_05145	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BGK55_05150	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BGK55_05155	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BGK55_05160	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BGK55_05165	COG1841	ribosomal large subunit assembly
BGK55_05170	COG0200	Binds to the 23S rRNA
BGK55_05175	COG0201	protein transport
BGK55_05180	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BGK55_05185	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BGK55_05190	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BGK55_05195	COG0202	RNA polymerase activity
BGK55_05200	COG0203	ribosomal protein L17
BGK55_05205	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BGK55_05220	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BGK55_05230	COG0154	amidase activity
BGK55_05245	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BGK55_05250	COG0039	L-malate dehydrogenase activity
BGK55_05255	COG2801	Transposase and inactivated derivatives
BGK55_05275	COG0446	pyridine nucleotide-disulphide oxidoreductase
BGK55_05275	COG1902	pentaerythritol trinitrate reductase activity
BGK55_05280	COG0604	alcohol dehydrogenase
BGK55_05305	COG0156	8-amino-7-oxononanoate synthase activity
BGK55_05310	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BGK55_05315	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BGK55_05320	COG4208	sulfate ABC transporter
BGK55_05325	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BGK55_05335	COG1063	alcohol dehydrogenase
BGK55_05365	COG0406	alpha-ribazole phosphatase activity
BGK55_05370	COG0285	dihydrofolate synthase activity
BGK55_05390	COG2833	Protein of unknown function (DUF455)
BGK55_05400	COG3291	Pkd domain containing protein
BGK55_05410	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BGK55_05415	COG0671	phosphoesterase, PA-phosphatase related
BGK55_05420	COG0438	transferase activity, transferring glycosyl groups
BGK55_05430	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BGK55_05445	COG4783	chaperone-mediated protein folding
BGK55_05460	COG0473	3-isopropylmalate dehydrogenase activity
BGK55_05530	COG3179	chitinase
BGK55_05575	COG4695	Portal protein
BGK55_05595	COG0189	ligase activity
BGK55_05605	COG0745	RESPONSE REGULATOR receiver
BGK55_05610	COG5002	protein histidine kinase activity
BGK55_05635	COG2801	Transposase and inactivated derivatives
BGK55_05640	COG0237	dephospho-CoA kinase activity
BGK55_05645	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BGK55_05705	COG0045	succinate-CoA ligase (ADP-forming) activity
BGK55_05725	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BGK55_05725	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BGK55_05735	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BGK55_05740	COG0564	pseudouridine synthase activity
BGK55_05755	COG3011	Protein conserved in bacteria
BGK55_05760	COG0840	transmembrane signaling receptor activity
BGK55_05775	COG3387	PFAM Glycoside hydrolase 15-related
BGK55_05780	COG1877	trehalose-phosphatase activity
BGK55_05820	COG2827	Endonuclease containing a URI domain
BGK55_05825	COG4771	TonB-dependent receptor
BGK55_05850	COG2801	Transposase and inactivated derivatives
BGK55_05855	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BGK55_05860	COG1116	anion transmembrane transporter activity
BGK55_05865	COG0542	response to heat
BGK55_05870	COG4206	TonB-dependent receptor
BGK55_05890	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BGK55_05900	COG1492	cobalamin metabolic process
BGK55_05910	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BGK55_05930	COG0019	diaminopimelate decarboxylase activity
BGK55_05945	COG4264	IucA IucC family
BGK55_05955	COG4772	TonB-dependent receptor
BGK55_05980	COG4651	solute:proton antiporter activity
BGK55_05980	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BGK55_06015	COG0488	(ABC) transporter
BGK55_06050	COG0477	Major facilitator Superfamily
BGK55_06065	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BGK55_06080	COG0217	transcriptional regulatory protein
BGK55_06085	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BGK55_06090	COG0632	four-way junction helicase activity
BGK55_06095	COG3158	transport of potassium into the cell
BGK55_06105	COG2255	four-way junction helicase activity
BGK55_06110	COG0824	Thioesterase
BGK55_06120	COG0848	biopolymer transport protein
BGK55_06130	COG0823	Involved in the tonB-independent uptake of proteins
BGK55_06135	COG2885	chlorophyll binding
BGK55_06145	COG0602	queuosine metabolic process
BGK55_06155	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BGK55_06160	COG3920	Histidine kinase
BGK55_06180	COG0840	transmembrane signaling receptor activity
BGK55_06210	COG0514	ATP-dependent DNA helicase (RecQ)
BGK55_06215	COG0783	Belongs to the Dps family
BGK55_06220	COG1643	Atp-dependent helicase
BGK55_06235	COG0837	glucose binding
BGK55_06250	COG0535	radical SAM domain protein
BGK55_06255	COG0535	radical SAM domain protein
BGK55_06260	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BGK55_06265	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BGK55_06270	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BGK55_06280	COG1215	transferase activity, transferring glycosyl groups
BGK55_06295	COG1199	ATP-dependent helicase activity
BGK55_06300	COG1214	PFAM Peptidase M22, glycoprotease
BGK55_06305	COG1397	ADP-ribosylglycohydrolase
BGK55_06315	COG0189	ligase activity
BGK55_06330	COG0835	chemotaxis
BGK55_06335	COG0840	transmembrane signaling receptor activity
BGK55_06365	COG1446	asparaginase
BGK55_06370	COG3142	Participates in the control of copper homeostasis
BGK55_06405	COG3537	Alpha-1,2-mannosidase
BGK55_06430	COG1472	Belongs to the glycosyl hydrolase 3 family
BGK55_06440	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BGK55_06445	COG1388	LysM domain
BGK55_06445	COG3858	chitin binding
BGK55_06460	COG0837	glucose binding
BGK55_06465	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BGK55_06475	COG0494	nUDIX hydrolase
BGK55_06485	COG3956	TIGRFAM MazG family protein
BGK55_06490	COG1742	UPF0060 membrane protein
BGK55_06500	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BGK55_06505	COG0509	glycine decarboxylation via glycine cleavage system
BGK55_06530	COG1960	acyl-CoA dehydrogenase activity
BGK55_06535	COG2267	carboxylic ester hydrolase activity
BGK55_06540	COG1309	transcriptional regulator
BGK55_06560	COG4771	TonB-dependent receptor
BGK55_06570	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BGK55_06575	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BGK55_06580	COG0463	Glycosyl transferase, family 2
BGK55_06585	COG0517	IMP dehydrogenase activity
BGK55_06585	COG0516	GMP reductase activity
BGK55_06590	COG2982	Protein involved in outer membrane biogenesis
BGK55_06595	COG1272	protein, Hemolysin III
BGK55_06600	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BGK55_06605	COG0739	heme binding
BGK55_06610	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BGK55_06615	COG0626	cystathionine gamma-synthase activity
BGK55_06620	COG0460	homoserine dehydrogenase
BGK55_06620	COG0527	aspartate kinase activity
BGK55_06630	COG1760	l-serine dehydratase
BGK55_06650	COG2353	YceI-like domain
BGK55_06655	COG0784	Response regulator, receiver
BGK55_06655	COG2205	protein histidine kinase activity
BGK55_06655	COG2198	Histidine kinase
BGK55_06675	COG0477	Major facilitator Superfamily
BGK55_06680	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BGK55_06690	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BGK55_06695	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BGK55_06700	COG0259	pyridoxamine-phosphate oxidase activity
BGK55_06710	COG1842	Phage shock protein A
BGK55_06735	COG0754	glutathionylspermidine amidase activity
BGK55_06745	COG2814	Major facilitator Superfamily
BGK55_06815	COG0531	amino acid
BGK55_06820	COG2197	response regulator
BGK55_06840	COG1113	amino acid transport
BGK55_06850	COG1271	oxidase subunit
BGK55_06855	COG1294	oxidase, subunit
BGK55_06870	COG2239	Acts as a magnesium transporter
BGK55_06875	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BGK55_06880	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BGK55_06890	COG1660	Displays ATPase and GTPase activities
BGK55_06895	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BGK55_06900	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BGK55_06915	COG1137	ATPase activity
BGK55_06920	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BGK55_06930	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BGK55_06940	COG0271	Belongs to the BolA IbaG family
BGK55_06945	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BGK55_06965	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BGK55_06980	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BGK55_06990	COG0628	permease
BGK55_07000	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BGK55_07020	COG1555	photosystem II stabilization
BGK55_07035	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BGK55_07040	COG1477	protein flavinylation
BGK55_07065	COG3128	pkhd-type hydroxylase
BGK55_07070	COG4774	siderophore transport
BGK55_07075	COG2146	nitrite reductase [NAD(P)H] activity
BGK55_07085	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BGK55_07090	COG0719	Fe-S assembly protein
BGK55_07095	COG0396	ATPase activity
BGK55_07100	COG0719	Fe-S assembly protein
BGK55_07105	COG1959	2 iron, 2 sulfur cluster binding
BGK55_07115	COG0693	protein deglycase activity
BGK55_07135	COG0739	heme binding
BGK55_07150	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BGK55_07185	COG1678	Uncharacterized ACR, COG1678
BGK55_07190	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BGK55_07195	COG0540	Belongs to the ATCase OTCase family
BGK55_07200	COG1764	response to oxidative stress
BGK55_07210	COG0384	phenazine biosynthesis protein PhzF
BGK55_07215	COG0384	phenazine biosynthesis protein PhzF
BGK55_07220	COG0527	aspartate kinase activity
BGK55_07235	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BGK55_07250	COG0142	geranyltranstransferase activity
BGK55_07255	COG0629	single-stranded DNA binding
BGK55_07260	COG3706	GGDEF domain
BGK55_07260	COG5001	Diguanylate cyclase
BGK55_07260	COG2203	Gaf domain
BGK55_07260	COG4251	negative regulation of phosphorylation
BGK55_07265	COG0604	alcohol dehydrogenase
BGK55_07265	COG3321	synthase
BGK55_07265	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_07270	COG2080	2 iron, 2 sulfur cluster binding
BGK55_07275	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BGK55_07280	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BGK55_07285	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BGK55_07330	COG2879	small protein
BGK55_07335	COG1966	Carbon starvation protein
BGK55_07340	COG1741	Belongs to the pirin family
BGK55_07355	COG1741	Belongs to the pirin family
BGK55_07365	COG1515	deoxyribonuclease V activity
BGK55_07370	COG0588	phosphoglycerate mutase activity
BGK55_07385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BGK55_07390	COG2201	protein-glutamate methylesterase activity
BGK55_07395	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BGK55_07400	COG2202	Pas domain
BGK55_07400	COG2199	diguanylate cyclase activity
BGK55_07400	COG2200	EAL domain
BGK55_07405	COG0835	chemotaxis
BGK55_07410	COG0840	transmembrane signaling receptor activity
BGK55_07415	COG0643	Histidine kinase
BGK55_07415	COG2198	Histidine kinase
BGK55_07440	COG2963	transposase activity
BGK55_07445	COG2801	Transposase and inactivated derivatives
BGK55_07455	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BGK55_07465	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BGK55_07470	COG0745	RESPONSE REGULATOR receiver
BGK55_07475	COG2205	protein histidine kinase activity
BGK55_07485	COG4452	Inner membrane protein CreD
BGK55_07510	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BGK55_07515	COG0735	belongs to the Fur family
BGK55_07530	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BGK55_07535	COG1538	Outer membrane efflux protein
BGK55_07540	COG1309	transcriptional regulator
BGK55_07545	COG0667	Aldo Keto reductase
BGK55_07560	COG2207	Transcriptional regulator
BGK55_07570	COG0583	DNA-binding transcription factor activity
BGK55_07575	COG2814	Major facilitator Superfamily
BGK55_07650	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BGK55_07700	COG5002	protein histidine kinase activity
BGK55_07700	COG5001	Diguanylate cyclase
BGK55_07705	COG1187	pseudouridine synthase activity
BGK55_07710	COG3706	GGDEF domain
BGK55_07710	COG0745	RESPONSE REGULATOR receiver
BGK55_07730	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BGK55_07740	COG0475	glutathione-regulated potassium exporter activity
BGK55_07750	COG0745	RESPONSE REGULATOR receiver
BGK55_07755	COG1538	Outer membrane efflux protein
BGK55_07785	COG1132	(ABC) transporter
BGK55_07825	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BGK55_07830	COG2155	Conserved Protein
BGK55_07855	COG3118	belongs to the thioredoxin family
BGK55_07865	COG0495	leucyl-tRNA aminoacylation
BGK55_07895	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BGK55_07910	COG2968	Membrane
BGK55_07915	COG0424	maF-like protein
BGK55_07920	COG1530	ribonuclease E activity
BGK55_07925	COG3164	Protein of unknown function
BGK55_07935	COG0312	modulator of DNA gyrase
BGK55_07940	COG3028	Belongs to the UPF0307 family
BGK55_07945	COG0312	modulator of DNA gyrase
BGK55_07955	COG4104	PAAR repeat-containing protein
BGK55_07960	COG0142	geranyltranstransferase activity
BGK55_07965	COG1722	exodeoxyribonuclease VII activity
BGK55_07970	COG0037	tRNA processing
BGK55_07975	COG1785	Belongs to the alkaline phosphatase family
BGK55_07980	COG1301	dicarboxylic acid transport
BGK55_07985	COG4106	trans-aconitate 2-methyltransferase activity
BGK55_07995	COG0791	NLP P60 protein
BGK55_08000	COG0791	NLP P60 protein
BGK55_08005	COG1047	Peptidyl-prolyl cis-trans
BGK55_08010	COG2311	Membrane
BGK55_08015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BGK55_08020	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BGK55_08040	COG3590	peptidase
BGK55_08045	COG3590	peptidase
BGK55_08065	COG0489	protein tyrosine kinase activity
BGK55_08070	COG0717	Belongs to the dCTP deaminase family
BGK55_08120	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BGK55_08135	COG0494	nUDIX hydrolase
BGK55_08140	COG0433	COG0433 Predicted ATPase
BGK55_08150	COG0688	phosphatidylethanolamine metabolic process
BGK55_08160	COG2890	protein-(glutamine-N5) methyltransferase activity
BGK55_08165	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BGK55_08170	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BGK55_08175	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BGK55_08200	COG0101	tRNA pseudouridine synthase activity
BGK55_08205	COG0135	phosphoribosylanthranilate isomerase activity
BGK55_08215	COG0133	tryptophan synthase activity
BGK55_08225	COG0159	tryptophan synthase activity
BGK55_08230	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BGK55_08235	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BGK55_08270	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_08275	COG0149	triose-phosphate isomerase activity
BGK55_08290	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BGK55_08295	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BGK55_08300	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BGK55_08305	COG0649	NAD binding
BGK55_08310	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BGK55_08315	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BGK55_08325	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BGK55_08330	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BGK55_08340	COG0713	ATP synthesis coupled electron transport
BGK55_08355	COG1007	ATP synthesis coupled electron transport
BGK55_08365	COG0779	Required for maturation of 30S ribosomal subunits
BGK55_08370	COG0195	Participates in both transcription termination and antitermination
BGK55_08375	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BGK55_08380	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BGK55_08385	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BGK55_08390	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BGK55_08425	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BGK55_08430	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BGK55_08440	COG2095	MarC family integral membrane protein
BGK55_08450	COG1611	Belongs to the LOG family
BGK55_08490	COG0556	nucleotide-excision repair
BGK55_08505	COG3505	Type IV secretory pathway VirD4
BGK55_08525	COG2948	multi-organism process
BGK55_08545	COG3702	type iv secretory pathway
BGK55_08590	COG0366	Alpha amylase catalytic
BGK55_08600	COG1082	Xylose isomerase domain protein TIM barrel
BGK55_08625	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BGK55_08630	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BGK55_08635	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BGK55_08640	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BGK55_08645	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BGK55_08650	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BGK55_08650	COG0072	phenylalanine-tRNA ligase activity
BGK55_08655	COG0776	regulation of translation
BGK55_08700	COG0438	transferase activity, transferring glycosyl groups
BGK55_08705	COG0438	transferase activity, transferring glycosyl groups
BGK55_08740	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BGK55_08745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BGK55_08750	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BGK55_08770	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BGK55_08780	COG1960	acyl-CoA dehydrogenase activity
BGK55_08795	COG3040	lipid binding
BGK55_08810	COG0322	excinuclease ABC activity
BGK55_08825	COG4191	Histidine kinase
BGK55_08825	COG0784	Response regulator, receiver
BGK55_08830	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BGK55_08835	COG1194	a g-specific adenine glycosylase
BGK55_08840	COG0552	protein localization to endoplasmic reticulum
BGK55_08850	COG3938	Belongs to the proline racemase family
BGK55_08855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BGK55_08870	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BGK55_08880	COG0006	proline dipeptidase activity
BGK55_08895	COG0531	amino acid
BGK55_08950	COG4206	TonB-dependent receptor
BGK55_08985	COG0326	Molecular chaperone. Has ATPase activity
BGK55_08990	COG0742	ribosomal rna small subunit methyltransferase
BGK55_08995	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BGK55_09005	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BGK55_09010	COG0405	Gamma-glutamyltransferase
BGK55_09020	COG3291	Pkd domain containing protein
BGK55_09025	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BGK55_09060	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BGK55_09065	COG0343	queuine tRNA-ribosyltransferase activity
BGK55_09070	COG1862	Preprotein translocase
BGK55_09080	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BGK55_09085	COG2801	Transposase and inactivated derivatives
BGK55_09090	COG2963	transposase activity
BGK55_09110	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BGK55_09110	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BGK55_09115	COG1105	Belongs to the carbohydrate kinase PfkB family
BGK55_09120	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BGK55_09120	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BGK55_09125	COG1609	Transcriptional regulator
BGK55_09130	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BGK55_09135	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_09145	COG2902	Dehydrogenase
BGK55_09170	COG0784	Response regulator, receiver
BGK55_09170	COG5002	protein histidine kinase activity
BGK55_09170	COG2205	protein histidine kinase activity
BGK55_09175	COG2733	membrane
BGK55_09200	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BGK55_09205	COG0243	molybdopterin cofactor binding
BGK55_09215	COG0477	Major facilitator Superfamily
BGK55_09220	COG2703	oxygen carrier activity
BGK55_09225	COG3706	GGDEF domain
BGK55_09225	COG0745	RESPONSE REGULATOR receiver
BGK55_09235	COG0174	glutamine synthetase
BGK55_09240	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BGK55_09255	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BGK55_09275	COG3842	ATPase activity
BGK55_09280	COG1176	ABC-type spermidine putrescine transport system, permease component I
BGK55_09285	COG1177	transmembrane transport
BGK55_09295	COG1012	belongs to the aldehyde dehydrogenase family
BGK55_09310	COG4535	Mg2 and Co2 transporter CorC
BGK55_09320	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BGK55_09330	COG1702	phosphate starvation-inducible protein PhoH
BGK55_09335	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BGK55_09350	COG0741	lytic transglycosylase activity
BGK55_09355	COG0723	plastoquinol--plastocyanin reductase activity
BGK55_09360	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BGK55_09365	COG2857	Cytochrome c1
BGK55_09370	COG0625	glutathione transferase activity
BGK55_09375	COG2969	positive regulation of protein catabolic process
BGK55_09395	COG1201	RNA secondary structure unwinding
BGK55_09400	COG2094	Belongs to the DNA glycosylase MPG family
BGK55_09405	COG0840	transmembrane signaling receptor activity
BGK55_09470	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BGK55_09480	COG1570	exodeoxyribonuclease VII activity
BGK55_09485	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BGK55_09490	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BGK55_09490	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BGK55_09495	COG0802	atpase or kinase
BGK55_09500	COG0860	N-Acetylmuramoyl-L-alanine amidase
BGK55_09505	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BGK55_09530	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_09535	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BGK55_09540	COG0501	Belongs to the peptidase M48B family
BGK55_09550	COG2081	HI0933 family
BGK55_09555	COG4681	YaeQ
BGK55_09565	COG0625	glutathione transferase activity
BGK55_09575	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BGK55_09580	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BGK55_09585	COG0513	Belongs to the DEAD box helicase family
BGK55_09610	COG0483	inositol monophosphate 1-phosphatase activity
BGK55_09625	COG3300	MHYT domain
BGK55_09625	COG5001	Diguanylate cyclase
BGK55_09630	COG1509	lysine 2,3-aminomutase activity
BGK55_09635	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BGK55_09645	COG0402	S-adenosylhomocysteine deaminase activity
BGK55_09650	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BGK55_09670	COG2801	Transposase and inactivated derivatives
BGK55_09680	COG2801	Transposase and inactivated derivatives
BGK55_09710	COG4302	ethanolamine ammonia-lyase activity
BGK55_09735	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BGK55_09740	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BGK55_09755	COG2166	iron-sulfur cluster assembly
BGK55_09760	COG0215	cysteine-tRNA ligase activity
BGK55_09770	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BGK55_09775	COG0137	argininosuccinate synthase activity
BGK55_09790	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BGK55_09800	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BGK55_09805	COG0165	Argininosuccinate lyase
BGK55_09815	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BGK55_09820	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BGK55_09840	COG1294	oxidase, subunit
BGK55_09850	COG4988	ABC transporter
BGK55_09855	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BGK55_09860	COG1278	Cold shock
BGK55_09865	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BGK55_09885	COG1138	Cytochrome C-type biogenesis protein
BGK55_09890	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BGK55_09910	COG4133	protoheme IX ABC transporter activity
BGK55_09915	COG0436	Aminotransferase
BGK55_09935	COG1187	pseudouridine synthase activity
BGK55_09940	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BGK55_09945	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BGK55_09950	COG2350	Protein conserved in bacteria
BGK55_09980	COG1175	transmembrane transport
BGK55_09985	COG0395	ABC-type sugar transport system, permease component
BGK55_10010	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BGK55_10015	COG2957	Belongs to the agmatine deiminase family
BGK55_10025	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BGK55_10030	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BGK55_10035	COG0539	negative regulation of cytoplasmic translation
BGK55_10040	COG0776	regulation of translation
BGK55_10050	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BGK55_10055	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BGK55_10065	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BGK55_10070	COG0475	glutathione-regulated potassium exporter activity
BGK55_10070	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BGK55_10080	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BGK55_10090	COG0519	Catalyzes the synthesis of GMP from XMP
BGK55_10090	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BGK55_10095	COG0582	viral genome integration into host DNA
BGK55_10115	COG2801	Transposase and inactivated derivatives
BGK55_10130	COG0667	Aldo Keto reductase
BGK55_10200	COG2801	Transposase and inactivated derivatives
BGK55_10210	COG3002	Belongs to the UPF0753 family
BGK55_10215	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BGK55_10220	COG0583	DNA-binding transcription factor activity
BGK55_10245	COG2197	response regulator
BGK55_10260	COG1335	isochorismatase
BGK55_10295	COG1914	H( )-stimulated, divalent metal cation uptake system
BGK55_10300	COG1321	iron dependent repressor
BGK55_10305	COG0590	tRNA wobble adenosine to inosine editing
BGK55_10310	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BGK55_10315	COG0668	transmembrane transport
BGK55_10325	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BGK55_10340	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_10345	COG1183	phosphatidylcholine synthase activity
BGK55_10355	COG3243	poly(R)-hydroxyalkanoic acid synthase
BGK55_10370	COG0723	plastoquinol--plastocyanin reductase activity
BGK55_10370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BGK55_10380	COG2183	response to ionizing radiation
BGK55_10385	COG2205	protein histidine kinase activity
BGK55_10385	COG0784	Response regulator, receiver
BGK55_10460	COG2801	Transposase and inactivated derivatives
BGK55_10470	COG2963	transposase activity
BGK55_10475	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BGK55_10480	COG0800	Aldolase
BGK55_10485	COG0129	dihydroxy-acid dehydratase activity
BGK55_10490	COG0363	glucosamine-6-phosphate deaminase activity
BGK55_10495	COG0837	glucose binding
BGK55_10500	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BGK55_10520	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BGK55_10535	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BGK55_10540	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BGK55_10550	COG4591	ABC-type transport system involved in lipoprotein release permease component
BGK55_10555	COG1136	(ABC) transporter
BGK55_10570	COG0811	peptide transport
BGK55_10580	COG1132	(ABC) transporter
BGK55_10585	COG1663	tetraacyldisaccharide 4'-kinase activity
BGK55_10590	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BGK55_10595	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BGK55_10605	COG0322	excinuclease ABC activity
BGK55_10610	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BGK55_10645	COG0643	Histidine kinase
BGK55_10645	COG2198	Histidine kinase
BGK55_10665	COG0455	bacterial-type flagellum organization
BGK55_10675	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BGK55_10690	COG5001	Diguanylate cyclase
BGK55_10690	COG3300	MHYT domain
BGK55_10705	COG3012	SEC-C Motif Domain Protein
BGK55_10705	COG3318	Belongs to the UPF0149 family
BGK55_10725	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BGK55_10735	COG1684	flagellar biosynthetic protein fliR
BGK55_10740	COG1987	bacterial-type flagellum assembly
BGK55_10750	COG3190	flagellar
BGK55_10800	COG1677	Flagellar hook-basal body complex protein FliE
BGK55_10845	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_10850	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_10855	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BGK55_10870	COG2204	response regulator
BGK55_10875	COG2201	protein-glutamate methylesterase activity
BGK55_10905	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BGK55_10910	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BGK55_10915	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BGK55_10925	COG1705	Flagellar rod assembly protein muramidase FlgJ
BGK55_10925	COG3951	Flagellar rod assembly protein muramidase FlgJ
BGK55_10930	COG1706	bacterial-type flagellum-dependent cell motility
BGK55_10935	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BGK55_10940	COG4786	Flagellar basal body rod
BGK55_10945	COG4787	bacterial-type flagellum-dependent cell motility
BGK55_10950	COG1749	Flagellar hook protein flgE
BGK55_10955	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BGK55_10960	COG1558	bacterial-type flagellum-dependent cell motility
BGK55_10965	COG1815	bacterial-type flagellum-dependent cell motility
BGK55_10970	COG0784	Response regulator, receiver
BGK55_10970	COG0835	chemotaxis
BGK55_10990	COG5002	protein histidine kinase activity
BGK55_11020	COG2915	High frequency lysogenization protein hflD homolog
BGK55_11025	COG0482	sulfurtransferase activity
BGK55_11035	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BGK55_11040	COG0542	response to heat
BGK55_11045	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BGK55_11050	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BGK55_11060	COG0492	ferredoxin-NADP+ reductase activity
BGK55_11075	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BGK55_11085	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BGK55_11090	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BGK55_11095	COG0183	Belongs to the thiolase family
BGK55_11100	COG1250	3-hydroxyacyl-CoA dehydrogenase
BGK55_11100	COG1024	Enoyl-CoA hydratase
BGK55_11110	COG0105	UTP biosynthetic process
BGK55_11115	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BGK55_11125	COG1426	Protein conserved in bacteria
BGK55_11135	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BGK55_11140	COG1160	GTP binding
BGK55_11145	COG0303	'Molybdopterin
BGK55_11150	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BGK55_11190	COG2801	Transposase and inactivated derivatives
BGK55_11265	COG2801	Transposase and inactivated derivatives
BGK55_11280	COG0708	Exodeoxyribonuclease III
BGK55_11290	COG0303	'Molybdopterin
BGK55_11295	COG0746	molybdenum cofactor guanylyltransferase activity
BGK55_11305	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BGK55_11305	COG1648	precorrin-2 dehydrogenase activity
BGK55_11325	COG3685	Protein conserved in bacteria
BGK55_11345	COG5001	Diguanylate cyclase
BGK55_11355	COG4566	intracellular signal transduction
BGK55_11375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_11395	COG3279	Response regulator of the LytR AlgR family
BGK55_11430	COG1238	metal cluster binding
BGK55_11440	COG2801	Transposase and inactivated derivatives
BGK55_11470	COG0316	Belongs to the HesB IscA family
BGK55_11470	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BGK55_11475	COG2154	pterin-4-alpha-carbinolamine dehydratase
BGK55_11485	COG0428	transporter
BGK55_11500	COG1530	ribonuclease E activity
BGK55_11530	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BGK55_11560	COG2801	Transposase and inactivated derivatives
BGK55_11585	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BGK55_11590	COG1360	Flagellar Motor Protein
BGK55_11595	COG1192	Involved in chromosome partitioning
BGK55_11600	COG0835	chemotaxis
BGK55_11610	COG0745	RESPONSE REGULATOR receiver
BGK55_11620	COG0840	transmembrane signaling receptor activity
BGK55_11630	COG0840	transmembrane signaling receptor activity
BGK55_11630	COG0840	transmembrane signaling receptor activity
BGK55_11635	COG0840	transmembrane signaling receptor activity
BGK55_11645	COG0840	transmembrane signaling receptor activity
BGK55_11650	COG0840	transmembrane signaling receptor activity
BGK55_11655	COG0840	transmembrane signaling receptor activity
BGK55_11670	COG0840	transmembrane signaling receptor activity
BGK55_11675	COG0840	transmembrane signaling receptor activity
BGK55_11680	COG0840	transmembrane signaling receptor activity
BGK55_11695	COG0835	chemotaxis
BGK55_11705	COG0840	transmembrane signaling receptor activity
BGK55_11715	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BGK55_11720	COG2201	protein-glutamate methylesterase activity
BGK55_11730	COG2267	carboxylic ester hydrolase activity
BGK55_11760	COG0318	PFAM AMP-dependent synthetase and ligase
BGK55_11765	COG1024	Enoyl-CoA hydratase
BGK55_11770	COG0784	Response regulator, receiver
BGK55_11770	COG2205	protein histidine kinase activity
BGK55_11770	COG2198	Histidine kinase
BGK55_11780	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BGK55_11785	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BGK55_11790	COG3279	Response regulator of the LytR AlgR family
BGK55_11815	COG2963	transposase activity
BGK55_11820	COG2801	Transposase and inactivated derivatives
BGK55_11855	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BGK55_11865	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BGK55_11870	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BGK55_11880	COG0505	Belongs to the CarA family
BGK55_11885	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BGK55_11895	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BGK55_11940	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BGK55_11960	COG0277	FAD linked oxidase domain protein
BGK55_11965	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BGK55_11975	COG0531	amino acid
BGK55_11980	COG0531	amino acid
BGK55_11985	COG0235	Class ii aldolase
BGK55_11990	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BGK55_11995	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BGK55_12010	COG0140	phosphoribosyl-ATP diphosphatase activity
BGK55_12010	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BGK55_12015	COG0107	imidazoleglycerol-phosphate synthase activity
BGK55_12020	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BGK55_12025	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BGK55_12030	COG0131	Imidazoleglycerol-phosphate dehydratase
BGK55_12030	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BGK55_12035	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BGK55_12040	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BGK55_12045	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BGK55_12055	COG0124	histidyl-tRNA synthetase
BGK55_12060	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BGK55_12135	COG0726	polysaccharide deacetylase
BGK55_12135	COG1649	PFAM Uncharacterised BCR, COG1649
BGK55_12140	COG1215	transferase activity, transferring glycosyl groups
BGK55_12165	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
BGK55_12165	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
BGK55_12270	COG2963	transposase activity
BGK55_12275	COG2801	Transposase and inactivated derivatives
BGK55_12300	COG1012	belongs to the aldehyde dehydrogenase family
BGK55_12315	COG0167	dihydroorotate dehydrogenase activity
BGK55_12320	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BGK55_12325	COG0697	spore germination
BGK55_12330	COG1794	racemase activity, acting on amino acids and derivatives
BGK55_12345	COG0671	phosphoesterase, PA-phosphatase related
BGK55_12350	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BGK55_12360	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BGK55_12365	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BGK55_12370	COG2203	Gaf domain
BGK55_12370	COG4251	negative regulation of phosphorylation
BGK55_12370	COG5001	Diguanylate cyclase
BGK55_12370	COG3706	GGDEF domain
BGK55_12380	COG1472	Belongs to the glycosyl hydrolase 3 family
BGK55_12400	COG0166	Belongs to the GPI family
BGK55_12405	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BGK55_12410	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BGK55_12415	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BGK55_12435	COG1469	GTP cyclohydrolase I activity
BGK55_12440	COG0860	N-Acetylmuramoyl-L-alanine amidase
BGK55_12450	COG0477	Major facilitator Superfamily
BGK55_12455	COG2115	Belongs to the xylose isomerase family
BGK55_12460	COG1070	Carbohydrate kinase
BGK55_12470	COG1501	Belongs to the glycosyl hydrolase 31 family
BGK55_12510	COG0800	Aldolase
BGK55_12515	COG4948	Mandelate Racemase Muconate Lactonizing
BGK55_12525	COG3734	2-keto-3-deoxy-galactonokinase
BGK55_12530	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BGK55_12540	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BGK55_12555	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BGK55_12560	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BGK55_12575	COG0351	phosphomethylpyrimidine kinase
BGK55_12600	COG2801	Transposase and inactivated derivatives
BGK55_12605	COG2963	transposase activity
BGK55_12615	COG0583	DNA-binding transcription factor activity
BGK55_12625	COG1741	Belongs to the pirin family
BGK55_12640	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BGK55_12645	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BGK55_12650	COG2137	regulation of response to DNA damage stimulus
BGK55_12655	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BGK55_12660	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BGK55_12670	COG1546	Belongs to the CinA family
BGK55_12675	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BGK55_12680	COG1923	regulation of RNA biosynthetic process
BGK55_12685	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BGK55_12690	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BGK55_12695	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BGK55_12700	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BGK55_12705	COG1534	Rna-binding protein
BGK55_12720	COG1238	metal cluster binding
BGK55_12725	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BGK55_12730	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BGK55_12735	COG2840	Smr protein MutS2
BGK55_12740	COG0585	pseudouridine synthase activity
BGK55_12745	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BGK55_12750	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BGK55_12755	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BGK55_12760	COG0148	phosphopyruvate hydratase activity
BGK55_12770	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BGK55_12775	COG0504	CTP synthase activity
BGK55_12800	COG0306	phosphate transporter
BGK55_12810	COG1253	flavin adenine dinucleotide binding
BGK55_12825	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BGK55_12830	COG0477	Major facilitator Superfamily
BGK55_12835	COG1132	(ABC) transporter
BGK55_12840	COG1136	(ABC) transporter
BGK55_12865	COG2264	protein methyltransferase activity
BGK55_12895	COG2244	polysaccharide biosynthetic process
BGK55_12945	COG2801	Transposase and inactivated derivatives
BGK55_12985	COG1595	DNA-templated transcription, initiation
BGK55_13000	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BGK55_13010	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BGK55_13020	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BGK55_13035	COG0784	Response regulator, receiver
BGK55_13035	COG4191	Histidine kinase
BGK55_13045	COG5002	protein histidine kinase activity
BGK55_13045	COG2205	protein histidine kinase activity
BGK55_13045	COG0784	Response regulator, receiver
BGK55_13075	COG0840	transmembrane signaling receptor activity
BGK55_13090	COG0583	DNA-binding transcription factor activity
BGK55_13095	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BGK55_13100	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BGK55_13115	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BGK55_13120	COG1605	Chorismate mutase
BGK55_13120	COG0077	Prephenate dehydratase
BGK55_13125	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BGK55_13130	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BGK55_13135	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BGK55_13175	COG1228	amidohydrolase
BGK55_13180	COG2986	histidine ammonia-lyase
BGK55_13190	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BGK55_13200	COG4993	Dehydrogenase
BGK55_13210	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BGK55_13220	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BGK55_13225	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BGK55_13230	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BGK55_13240	COG3115	cell septum assembly
BGK55_13250	COG0359	binds to the 23S rRNA
BGK55_13255	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BGK55_13260	COG0360	Binds together with S18 to 16S ribosomal RNA
BGK55_13265	COG0316	Belongs to the HesB IscA family
BGK55_13270	COG0017	Asparaginyl-tRNA synthetase
BGK55_13290	COG2808	Putative FMN-binding domain
BGK55_13325	COG2801	Transposase and inactivated derivatives
BGK55_13370	COG0288	reversible hydration of carbon dioxide
BGK55_13375	COG0662	Cupin 2, conserved barrel domain protein
BGK55_13385	COG3844	kynureninase activity
BGK55_13390	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BGK55_13395	COG2925	Exonuclease
BGK55_13420	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BGK55_13425	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BGK55_13425	COG0116	Belongs to the methyltransferase superfamily
BGK55_13465	COG0494	nUDIX hydrolase
BGK55_13475	COG1024	Enoyl-CoA hydratase
BGK55_13485	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BGK55_13490	COG0659	secondary active sulfate transmembrane transporter activity
BGK55_13515	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BGK55_13520	COG0573	inorganic phosphate transmembrane transporter activity
BGK55_13525	COG0581	inorganic phosphate transmembrane transporter activity
BGK55_13530	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BGK55_13535	COG0704	Plays a role in the regulation of phosphate uptake
BGK55_13545	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BGK55_13550	COG3706	GGDEF domain
BGK55_13555	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BGK55_13565	COG0557	exoribonuclease II activity
BGK55_13580	COG1960	acyl-CoA dehydrogenase activity
BGK55_13590	COG1410	methionine synthase
BGK55_13590	COG0646	methionine synthase
BGK55_13605	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BGK55_13630	COG2900	Belongs to the SlyX family
BGK55_13645	COG0386	Belongs to the glutathione peroxidase family
BGK55_13655	COG1725	Transcriptional regulator
BGK55_13660	COG1131	(ABC) transporter
BGK55_13690	COG1253	flavin adenine dinucleotide binding
BGK55_13710	COG2850	peptidyl-arginine hydroxylation
BGK55_13745	COG1132	(ABC) transporter
BGK55_13750	COG0583	DNA-binding transcription factor activity
BGK55_13780	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BGK55_13785	COG0484	heat shock protein binding
BGK55_13790	COG0443	Heat shock 70 kDa protein
BGK55_13795	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BGK55_13800	COG1420	regulation of RNA biosynthetic process
BGK55_13805	COG0497	DNA recombination
BGK55_13815	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BGK55_13830	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BGK55_13855	COG2801	Transposase and inactivated derivatives
BGK55_13880	COG3706	GGDEF domain
BGK55_13890	COG3706	GGDEF domain
BGK55_13930	COG0583	DNA-binding transcription factor activity
BGK55_13940	COG0415	Belongs to the DNA photolyase family
BGK55_13945	COG0305	Participates in initiation and elongation during chromosome replication
BGK55_13955	COG0367	asparagine synthase
BGK55_13975	COG1960	acyl-CoA dehydrogenase activity
BGK55_13990	COG0084	hydrolase, TatD family'
BGK55_13995	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BGK55_14050	COG0386	Belongs to the glutathione peroxidase family
BGK55_14055	COG0339	signal peptide processing
BGK55_14085	COG3104	oligopeptide transport
BGK55_14105	COG2814	Major facilitator Superfamily
BGK55_14110	COG1566	PFAM secretion protein HlyD family protein
BGK55_14135	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BGK55_14155	COG4774	siderophore transport
BGK55_14165	COG0367	asparagine synthase
BGK55_14170	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BGK55_14175	COG1393	Belongs to the ArsC family
BGK55_14185	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BGK55_14190	COG0024	Methionine aminopeptidase
BGK55_14225	COG0052	Belongs to the universal ribosomal protein uS2 family
BGK55_14230	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BGK55_14235	COG3706	GGDEF domain
BGK55_14235	COG0745	RESPONSE REGULATOR receiver
BGK55_14240	COG0528	UMP kinase activity
BGK55_14245	COG0233	cytoplasmic translational termination
BGK55_14250	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BGK55_14255	COG0575	Belongs to the CDS family
BGK55_14260	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BGK55_14265	COG0750	zinc metalloprotease
BGK55_14280	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BGK55_14285	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BGK55_14290	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BGK55_14295	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BGK55_14300	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BGK55_14310	COG0825	malonyl-CoA metabolic process
BGK55_14345	COG1695	Transcriptional regulator
BGK55_14365	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BGK55_14375	COG2040	homocysteine
BGK55_14380	COG0833	amino acid
BGK55_14385	COG0346	lactoylglutathione lyase activity
BGK55_14390	COG1131	(ABC) transporter
BGK55_14405	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BGK55_14405	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BGK55_14415	COG2878	Part of a membrane complex involved in electron transport
BGK55_14435	COG1595	DNA-templated transcription, initiation
BGK55_14460	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BGK55_14475	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BGK55_14480	COG0251	oxidation-reduction process
BGK55_14490	COG0392	lysyltransferase activity
BGK55_14490	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BGK55_14525	COG2814	Major facilitator Superfamily
BGK55_14535	COG2824	Alkylphosphonate utilization operon protein PhnA
BGK55_14545	COG1047	Peptidyl-prolyl cis-trans
BGK55_14550	COG1077	Cell shape determining protein MreB Mrl
BGK55_14570	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BGK55_14580	COG5487	UPF0391 membrane protein
BGK55_14585	COG1451	nucleotide metabolic process
BGK55_14610	COG0183	Belongs to the thiolase family
BGK55_14625	COG0745	RESPONSE REGULATOR receiver
BGK55_14625	COG3706	GGDEF domain
BGK55_14640	COG1793	dna ligase
BGK55_14640	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BGK55_14650	COG1793	dna ligase
BGK55_14655	COG1201	RNA secondary structure unwinding
BGK55_14665	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BGK55_14670	COG1278	Cold shock
BGK55_14675	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BGK55_14685	COG1472	Belongs to the glycosyl hydrolase 3 family
BGK55_14690	COG3046	protein related to deoxyribodipyrimidine photolyase
BGK55_14700	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BGK55_14710	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BGK55_14720	COG1381	Involved in DNA repair and RecF pathway recombination
BGK55_14725	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BGK55_14730	COG0571	ribonuclease III activity
BGK55_14745	COG0481	GTPase activity
BGK55_14750	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BGK55_14765	COG1250	3-hydroxyacyl-CoA dehydrogenase
BGK55_14765	COG1024	Enoyl-CoA hydratase
BGK55_14790	COG1960	acyl-CoA dehydrogenase activity
BGK55_14810	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BGK55_14860	COG3209	COG3209 Rhs family protein
BGK55_14880	COG2801	Transposase and inactivated derivatives
BGK55_14885	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BGK55_14895	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BGK55_14920	COG0534	Mate efflux family protein
BGK55_14925	COG0335	large ribosomal subunit rRNA binding
BGK55_14930	COG0336	Belongs to the RNA methyltransferase TrmD family
BGK55_14935	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BGK55_14940	COG0228	four-way junction DNA binding
BGK55_14945	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BGK55_14960	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BGK55_14965	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BGK55_14995	COG0784	Response regulator, receiver
BGK55_14995	COG4191	Histidine kinase
BGK55_15000	COG3850	Histidine kinase
BGK55_15000	COG3437	response regulator, receiver
BGK55_15000	COG2205	protein histidine kinase activity
BGK55_15000	COG4999	Histidine kinase
BGK55_15005	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BGK55_15015	COG3706	GGDEF domain
BGK55_15015	COG0745	RESPONSE REGULATOR receiver
BGK55_15020	COG5507	3-demethylubiquinone-9 3-methyltransferase
BGK55_15030	COG4771	TonB-dependent receptor
BGK55_15055	COG2172	sigma factor antagonist activity
BGK55_15060	COG1366	Belongs to the anti-sigma-factor antagonist family
BGK55_15065	COG1366	Belongs to the anti-sigma-factor antagonist family
BGK55_15075	COG0326	Molecular chaperone. Has ATPase activity
BGK55_15080	COG2207	Transcriptional regulator
BGK55_15090	COG3152	Membrane
BGK55_15105	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BGK55_15110	COG1845	cytochrome c oxidase, subunit III
BGK55_15115	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BGK55_15155	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
BGK55_15155	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BGK55_15245	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BGK55_15250	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BGK55_15255	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BGK55_15260	COG0196	riboflavin kinase activity
BGK55_15265	COG0728	peptidoglycan biosynthetic process
BGK55_15275	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BGK55_15280	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BGK55_15285	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BGK55_15290	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BGK55_15295	COG0824	Thioesterase
BGK55_15310	COG1946	Acyl-CoA thioesterase
BGK55_15335	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BGK55_15345	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BGK55_15370	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BGK55_15385	COG2197	response regulator
BGK55_15390	COG4585	Histidine kinase
BGK55_15405	COG0850	regulation of cytokinetic process
BGK55_15410	COG2894	cell division
BGK55_15415	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BGK55_15425	COG0642	Histidine kinase
BGK55_15430	COG0745	RESPONSE REGULATOR receiver
BGK55_15445	COG2194	sulfuric ester hydrolase activity
BGK55_15460	COG2814	Major facilitator Superfamily
BGK55_15465	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BGK55_15465	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BGK55_15475	COG0656	L-ascorbic acid biosynthetic process
BGK55_15480	COG0753	catalase activity
BGK55_15510	COG1917	Cupin 2, conserved barrel domain protein
BGK55_15510	COG2207	Transcriptional regulator
BGK55_15550	COG1297	OPT oligopeptide transporter protein
BGK55_15565	COG0587	DNA-directed DNA polymerase activity
BGK55_15580	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BGK55_15615	COG2080	2 iron, 2 sulfur cluster binding
BGK55_15620	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BGK55_15650	COG0492	ferredoxin-NADP+ reductase activity
BGK55_15660	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_15665	COG3537	Alpha-1,2-mannosidase
BGK55_15670	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_15700	COG2189	Belongs to the N(4) N(6)-methyltransferase family
BGK55_15710	COG1196	nuclear chromosome segregation
BGK55_15715	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BGK55_15740	COG1309	transcriptional regulator
BGK55_15745	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_15755	COG0308	aminopeptidase N
BGK55_15760	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BGK55_15770	COG0330	HflC and HflK could
BGK55_15775	COG0330	HflC and HflK could
BGK55_15795	COG0678	peroxiredoxin activity
BGK55_15805	COG4953	penicillin-binding protein 1C
BGK55_15860	COG3829	transcription factor binding
BGK55_15885	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BGK55_15890	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BGK55_15900	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BGK55_15905	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_15920	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BGK55_15925	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BGK55_15930	COG1399	metal-binding, possibly nucleic acid-binding protein
BGK55_15935	COG0424	maF-like protein
BGK55_15955	COG0714	Associated with various cellular activities
BGK55_15975	COG0537	adenosine 5'-monophosphoramidase activity
BGK55_15980	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BGK55_15985	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BGK55_15990	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BGK55_16005	COG0314	molybdopterin synthase activity
BGK55_16010	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BGK55_16015	COG0315	cyclic pyranopterin monophosphate synthase activity
BGK55_16025	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BGK55_16030	COG1234	tRNA 3'-trailer cleavage
BGK55_16035	COG3642	lipopolysaccharide core region biosynthetic process
BGK55_16040	COG0859	PFAM glycosyl transferase family 9
BGK55_16055	COG0631	protein serine/threonine phosphatase activity
BGK55_16060	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BGK55_16065	COG0328	RNA-DNA hybrid ribonuclease activity
BGK55_16075	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BGK55_16085	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BGK55_16115	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BGK55_16120	COG0740	serine-type endopeptidase activity
BGK55_16125	COG0544	peptidyl-prolyl cis-trans isomerase activity
BGK55_16135	COG3852	Histidine kinase
BGK55_16150	COG2801	Transposase and inactivated derivatives
BGK55_16155	COG2963	transposase activity
BGK55_16165	COG2801	Transposase and inactivated derivatives
BGK55_16240	COG2963	transposase activity
BGK55_16245	COG2801	Transposase and inactivated derivatives
BGK55_16320	COG2022	thiamine diphosphate biosynthetic process
BGK55_16325	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BGK55_16330	COG3273	potassium ion transport
BGK55_16330	COG0471	metal ion transport
BGK55_16350	COG1970	mechanosensitive ion channel activity
BGK55_16365	COG1609	Transcriptional regulator
BGK55_16375	COG3250	beta-galactosidase activity
BGK55_16380	COG4948	Mandelate Racemase Muconate Lactonizing
BGK55_16395	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BGK55_16405	COG0308	aminopeptidase N
BGK55_16425	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BGK55_16435	COG2895	sulfate adenylyltransferase (ATP) activity
BGK55_16435	COG0529	Catalyzes the synthesis of activated sulfate
BGK55_16440	COG0175	sulfate reduction
BGK55_16445	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BGK55_16450	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BGK55_16455	COG0175	sulfate reduction
BGK55_16495	COG1648	precorrin-2 dehydrogenase activity
BGK55_16495	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BGK55_16510	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BGK55_16515	COG3588	fructose-bisphosphate aldolase
BGK55_16520	COG0469	pyruvate kinase activity
BGK55_16530	COG0126	phosphoglycerate kinase activity
BGK55_16550	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BGK55_16560	COG3047	cAMP biosynthetic process
BGK55_16565	COG3047	cAMP biosynthetic process
BGK55_16575	COG3453	Protein conserved in bacteria
BGK55_16575	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BGK55_16580	COG0725	ABC transporter, periplasmic molybdate-binding protein
BGK55_16585	COG4149	molybdate abc transporter
BGK55_16590	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BGK55_16625	COG1376	ErfK ybiS ycfS ynhG family protein
BGK55_16630	COG0739	heme binding
BGK55_16650	COG4773	Receptor
BGK55_16670	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BGK55_16675	COG1301	dicarboxylic acid transport
BGK55_16685	COG2304	oxidoreductase activity
BGK55_16705	COG0714	Associated with various cellular activities
BGK55_16735	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BGK55_16750	COG0254	rRNA binding
BGK55_16760	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BGK55_16770	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BGK55_16775	COG1758	RNA polymerase activity
BGK55_16780	COG0194	GDP metabolic process
BGK55_16785	COG1561	YicC-like family, N-terminal region
BGK55_16790	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BGK55_16800	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BGK55_16805	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BGK55_16820	COG0006	proline dipeptidase activity
BGK55_16830	COG0006	proline dipeptidase activity
BGK55_16835	COG3079	Belongs to the UPF0149 family
BGK55_16855	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BGK55_16865	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BGK55_16875	COG2912	Transglutaminase-like superfamily
BGK55_16880	COG1773	rubredoxin
BGK55_16885	COG0352	thiamine-phosphate diphosphorylase activity
BGK55_16895	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BGK55_16905	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
BGK55_16910	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BGK55_16940	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BGK55_16945	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BGK55_16950	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_16960	COG0671	phosphoesterase, PA-phosphatase related
BGK55_16965	COG3781	membrane
BGK55_16975	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BGK55_16980	COG0563	adenylate kinase activity
BGK55_16995	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BGK55_17005	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BGK55_17025	COG3710	Transcriptional regulator
BGK55_17030	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BGK55_17040	COG0840	transmembrane signaling receptor activity
BGK55_17045	COG0405	Gamma-glutamyltransferase
BGK55_17050	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BGK55_17070	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BGK55_17075	COG0473	3-isopropylmalate dehydrogenase activity
BGK55_17080	COG0066	3-isopropylmalate dehydratase activity
BGK55_17085	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BGK55_17105	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BGK55_17110	COG1538	Outer membrane efflux protein
BGK55_17115	COG1519	Transferase
BGK55_17120	COG1560	Kdo2-lipid A biosynthetic process
BGK55_17145	COG0281	malic enzyme
BGK55_17145	COG0280	phosphate acetyltransferase
BGK55_17150	COG1301	dicarboxylic acid transport
BGK55_17180	COG0583	DNA-binding transcription factor activity
BGK55_17190	COG0667	Aldo Keto reductase
BGK55_17205	COG2197	response regulator
BGK55_17210	COG1840	ABC-type Fe3 transport system, periplasmic component
BGK55_17215	COG0642	Histidine kinase
BGK55_17230	COG2851	Citrate transporter
BGK55_17235	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_17240	COG1609	Transcriptional regulator
BGK55_17245	COG2211	Major facilitator Superfamily
BGK55_17270	COG1162	GTPase activity
BGK55_17295	COG2801	Transposase and inactivated derivatives
BGK55_17330	COG4773	Receptor
BGK55_17335	COG0726	polysaccharide deacetylase
BGK55_17340	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BGK55_17355	COG3964	amidohydrolase
BGK55_17360	COG0402	S-adenosylhomocysteine deaminase activity
BGK55_17380	COG1307	EDD domain protein, DegV family
BGK55_17385	COG0242	peptide deformylase activity
BGK55_17410	COG0457	Tetratricopeptide repeat
BGK55_17415	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BGK55_17420	COG1215	transferase activity, transferring glycosyl groups
BGK55_17425	COG1215	transferase activity, transferring glycosyl groups
BGK55_17440	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BGK55_17490	COG2188	Transcriptional regulator
BGK55_17500	COG1450	Type ii and iii secretion system protein
BGK55_17515	COG3166	PFAM Fimbrial assembly family protein
BGK55_17520	COG3156	type II secretion system protein K
BGK55_17525	COG4795	General secretion pathway protein
BGK55_17530	COG2165	general secretion pathway protein
BGK55_17535	COG4970	Tfp pilus assembly protein FimT
BGK55_17540	COG2165	general secretion pathway protein
BGK55_17545	COG1459	type II secretion system
BGK55_17550	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BGK55_17555	COG1404	Belongs to the peptidase S8 family
BGK55_17565	COG1404	Belongs to the peptidase S8 family
BGK55_17575	COG0047	phosphoribosylformylglycinamidine synthase activity
BGK55_17575	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BGK55_17580	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BGK55_17585	COG4974	Belongs to the 'phage' integrase family
BGK55_17600	COG0795	lipopolysaccharide-transporting ATPase activity
BGK55_17610	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BGK55_17625	COG0525	valine-tRNA ligase activity
BGK55_17655	COG1183	phosphatidylcholine synthase activity
BGK55_17665	COG0442	prolyl-tRNA aminoacylation
BGK55_17680	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BGK55_17685	COG1127	ABC transporter
BGK55_17690	COG3218	ABC-type transport auxiliary lipoprotein component
BGK55_17690	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BGK55_17720	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BGK55_17725	COG0662	Cupin 2, conserved barrel domain protein
BGK55_17725	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BGK55_17755	COG2086	electron transfer activity
BGK55_17770	COG0463	Glycosyl transferase, family 2
BGK55_17785	COG2813	Specifically methylates the guanine in position
BGK55_17805	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
BGK55_17810	COG0438	transferase activity, transferring glycosyl groups
BGK55_17830	COG0438	transferase activity, transferring glycosyl groups
BGK55_17840	COG0626	cystathionine gamma-synthase activity
BGK55_17870	COG0625	glutathione transferase activity
BGK55_17880	COG0513	Belongs to the DEAD box helicase family
BGK55_17890	COG4206	TonB-dependent receptor
BGK55_17895	COG0720	synthase
BGK55_17905	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BGK55_17915	COG1956	GAF domain-containing protein
BGK55_17925	COG2819	hydrolase of the alpha beta superfamily
BGK55_17940	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BGK55_17945	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BGK55_17960	COG0339	signal peptide processing
BGK55_18010	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BGK55_18015	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_18020	COG1136	(ABC) transporter
BGK55_18025	COG1136	(ABC) transporter
BGK55_18025	COG0577	efflux transmembrane transporter activity
BGK55_18030	COG0577	efflux transmembrane transporter activity
BGK55_18045	COG4191	Histidine kinase
BGK55_18050	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BGK55_18065	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BGK55_18070	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BGK55_18075	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BGK55_18080	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BGK55_18085	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BGK55_18090	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BGK55_18100	COG0356	it plays a direct role in the translocation of protons across the membrane
BGK55_18120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BGK55_18130	COG0508	dehydrogenase complex catalyzes the overall conversion of
BGK55_18170	COG2011	ABC-type metal ion transport system permease component
BGK55_18175	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BGK55_18180	COG0697	spore germination
BGK55_18185	COG1666	GTP binding
BGK55_18195	COG0784	Response regulator, receiver
BGK55_18195	COG2198	Histidine kinase
BGK55_18195	COG5002	protein histidine kinase activity
BGK55_18220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BGK55_18230	COG2813	Specifically methylates the guanine in position
BGK55_18250	COG2205	protein histidine kinase activity
BGK55_18250	COG2202	Pas domain
BGK55_18270	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BGK55_18275	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BGK55_18280	COG1522	sequence-specific DNA binding
BGK55_18330	COG0842	Transport permease protein
BGK55_18335	COG1131	(ABC) transporter
BGK55_18340	COG0025	NhaP-type Na H and K H
BGK55_18345	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BGK55_18350	COG1573	uracil-dna glycosylase
BGK55_18360	COG3384	dioxygenase
BGK55_18370	COG0583	DNA-binding transcription factor activity
BGK55_18380	COG0667	Aldo Keto reductase
BGK55_18390	COG3590	peptidase
BGK55_18410	COG0531	amino acid
BGK55_18425	COG2972	Histidine kinase
BGK55_18440	COG3685	Protein conserved in bacteria
BGK55_18445	COG3546	catalase activity
BGK55_18490	COG1271	oxidase subunit
BGK55_18495	COG1294	oxidase, subunit
BGK55_18510	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_18515	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BGK55_18535	COG1132	(ABC) transporter
BGK55_18550	COG1063	alcohol dehydrogenase
BGK55_18630	COG0583	DNA-binding transcription factor activity
BGK55_18635	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BGK55_18675	COG0024	Methionine aminopeptidase
BGK55_18700	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BGK55_18705	COG1490	D-aminoacyl-tRNA deacylase activity
BGK55_18710	COG1560	Kdo2-lipid A biosynthetic process
BGK55_18765	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BGK55_18765	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BGK55_18770	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BGK55_18775	COG0242	peptide deformylase activity
BGK55_18780	COG1652	LysM domain
BGK55_18785	COG0758	DNA mediated transformation
BGK55_18805	COG1754	DNA topoisomerase type I activity
BGK55_18805	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BGK55_18810	COG0009	L-threonylcarbamoyladenylate synthase
BGK55_18825	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_18840	COG0616	signal peptide processing
BGK55_18845	COG0534	Mate efflux family protein
BGK55_18865	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BGK55_18870	COG0625	glutathione transferase activity
BGK55_18885	COG1252	NADH dehydrogenase
BGK55_18890	COG2860	membrane
BGK55_18895	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BGK55_18900	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BGK55_18905	COG2201	protein-glutamate methylesterase activity
BGK55_18910	COG2177	Part of the ABC transporter FtsEX involved in
BGK55_18915	COG2884	Cell division ATP-binding protein ftsE
BGK55_18925	COG3118	belongs to the thioredoxin family
BGK55_18930	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BGK55_18935	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BGK55_18940	COG0583	DNA-binding transcription factor activity
BGK55_18960	COG1652	LysM domain
BGK55_18965	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BGK55_18965	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BGK55_18970	COG1473	amidohydrolase
BGK55_18975	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_18980	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BGK55_18990	COG5383	Protein conserved in bacteria
BGK55_19030	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BGK55_19035	COG3023	N-Acetylmuramoyl-L-alanine amidase
BGK55_19045	COG4948	Mandelate Racemase Muconate Lactonizing
BGK55_19055	COG0531	amino acid
BGK55_19070	COG4682	membrane
BGK55_19075	COG2133	pyrroloquinoline quinone binding
BGK55_19085	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BGK55_19090	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BGK55_19095	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BGK55_19100	COG1610	YqeY-like protein
BGK55_19105	COG1295	ribonuclease BN
BGK55_19110	COG0358	DNA primase activity
BGK55_19125	COG0109	protoheme IX farnesyltransferase activity
BGK55_19155	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BGK55_19165	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BGK55_19210	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BGK55_19215	COG0739	heme binding
BGK55_19220	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BGK55_19230	COG2211	Major facilitator Superfamily
BGK55_19235	COG0708	Exodeoxyribonuclease III
BGK55_19240	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BGK55_19250	COG1192	Involved in chromosome partitioning
BGK55_19255	COG1475	DNA binding
BGK55_19270	COG0463	Glycosyl transferase, family 2
BGK55_19290	COG0756	dUTP diphosphatase activity
BGK55_19295	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BGK55_19300	COG2003	Belongs to the UPF0758 family
BGK55_19305	COG0018	arginyl-trna synthetase
BGK55_19320	COG4221	oxidoreductase activity
BGK55_19325	COG2755	lipolytic protein G-D-S-L family
BGK55_19325	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BGK55_19345	COG1166	arginine decarboxylase activity
BGK55_19350	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BGK55_19385	COG0606	chelatase, subunit chli
BGK55_19400	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BGK55_19435	COG1690	Belongs to the RtcB family
BGK55_19475	COG1090	epimerase
BGK55_19480	COG0745	RESPONSE REGULATOR receiver
BGK55_19485	COG0642	Histidine kinase
BGK55_19510	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BGK55_19535	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BGK55_19540	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BGK55_19555	COG0753	catalase activity
BGK55_19570	COG2197	response regulator
BGK55_19575	COG4585	Histidine kinase
BGK55_19580	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_19585	COG1136	(ABC) transporter
BGK55_19625	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BGK55_19630	COG0180	Tryptophanyl-tRNA synthetase
BGK55_19635	COG3237	CsbD-like
BGK55_19675	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BGK55_19700	COG2801	Transposase and inactivated derivatives
BGK55_19730	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BGK55_19735	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
BGK55_19735	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
BGK55_19775	COG2205	protein histidine kinase activity
BGK55_19780	COG0745	RESPONSE REGULATOR receiver
BGK55_19790	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BGK55_19810	COG1199	ATP-dependent helicase activity
BGK55_19825	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BGK55_19890	COG0625	glutathione transferase activity
BGK55_19930	COG4555	ABC transporter
BGK55_19940	COG1476	TRANSCRIPTIONal
BGK55_19985	COG0633	Ferredoxin
BGK55_19985	COG0543	2 iron, 2 sulfur cluster binding
BGK55_19990	COG1131	(ABC) transporter
BGK55_19995	COG0842	Transport permease protein
BGK55_20005	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BGK55_20035	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BGK55_20040	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BGK55_20050	COG1042	CoA-binding domain protein
BGK55_20050	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BGK55_20050	COG0045	succinate-CoA ligase (ADP-forming) activity
BGK55_20055	COG2239	Acts as a magnesium transporter
BGK55_20070	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BGK55_20075	COG3387	PFAM Glycoside hydrolase 15-related
BGK55_20090	COG3100	YcgL domain-containing protein
BGK55_20095	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BGK55_20105	COG0463	Glycosyl transferase, family 2
BGK55_20120	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_20165	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BGK55_20180	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BGK55_20205	COG4946	Tricorn protease homolog
BGK55_20205	COG1506	peptidase
BGK55_20205	COG0823	Involved in the tonB-independent uptake of proteins
BGK55_20220	COG0408	coproporphyrinogen oxidase activity
BGK55_20265	COG0631	protein serine/threonine phosphatase activity
BGK55_20300	COG3501	Rhs element vgr protein
BGK55_20430	COG0210	DNA helicase
BGK55_20445	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BGK55_20455	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BGK55_20465	COG2159	amidohydrolase
BGK55_20470	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BGK55_20475	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BGK55_20490	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BGK55_20510	COG0357	Ribosomal RNA small subunit methyltransferase G
BGK55_20515	COG3540	Alkaline phosphatase
BGK55_20525	COG2091	lysine biosynthetic process via aminoadipic acid
BGK55_20545	COG0708	Exodeoxyribonuclease III
BGK55_20550	COG1940	carbohydrate kinase activity
BGK55_20550	COG1846	Transcriptional regulator
BGK55_20560	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BGK55_20570	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BGK55_20575	COG3162	membrane
BGK55_20585	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BGK55_20615	COG3507	Belongs to the glycosyl hydrolase 43 family
BGK55_20635	COG1028	Short-chain dehydrogenase reductase Sdr
BGK55_20640	COG0179	Fumarylacetoacetate (FAA) hydrolase
BGK55_20645	COG4948	Mandelate Racemase Muconate Lactonizing
BGK55_20650	COG3254	rhamnose metabolic process
BGK55_20655	COG0738	Major facilitator superfamily
BGK55_20660	COG1414	Transcriptional regulator
BGK55_20670	COG1971	Probably functions as a manganese efflux pump
BGK55_20675	COG2205	protein histidine kinase activity
BGK55_20685	COG3459	Glycosyltransferase 36 associated
BGK55_20690	COG2211	Major facilitator Superfamily
BGK55_20695	COG3265	gluconokinase activity
BGK55_20700	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BGK55_20730	COG2911	Protein conserved in bacteria
BGK55_20735	COG0729	surface antigen
BGK55_20740	COG4771	TonB-dependent receptor
BGK55_20745	COG0457	Tetratricopeptide repeat
BGK55_20755	COG0752	glycyl-tRNA synthetase alpha subunit
BGK55_20760	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BGK55_20770	COG0519	Catalyzes the synthesis of GMP from XMP
BGK55_20770	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BGK55_20780	COG0805	protein transport
BGK55_20785	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BGK55_20790	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BGK55_20800	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BGK55_20820	COG2974	May be involved in recombination
BGK55_20825	COG0037	tRNA processing
BGK55_20830	COG2115	Belongs to the xylose isomerase family
BGK55_20840	COG3661	Belongs to the glycosyl hydrolase 67 family
BGK55_20850	COG4948	Mandelate Racemase Muconate Lactonizing
BGK55_20860	COG1472	Belongs to the glycosyl hydrolase 3 family
BGK55_20865	COG0246	Mannitol dehydrogenase
BGK55_20905	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BGK55_20930	COG3386	PFAM SMP-30 Gluconolaconase
BGK55_20940	COG3250	beta-galactosidase activity
BGK55_20945	COG1904	glucuronate isomerase
BGK55_20960	COG3693	PFAM glycoside hydrolase, family 10
BGK55_20975	COG2211	Major facilitator Superfamily
BGK55_21010	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BGK55_21020	COG1435	thymidine kinase activity
BGK55_21025	COG0210	DNA helicase
BGK55_21040	COG3132	Protein of unknown function, DUF480
BGK55_21045	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BGK55_21050	COG0284	orotidine-5'-phosphate decarboxylase activity
BGK55_21085	COG2937	Belongs to the GPAT DAPAT family
BGK55_21105	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BGK55_21135	COG3135	benzoate transporter
BGK55_21155	COG0676	glucose-6-phosphate 1-epimerase activity
BGK55_21165	COG3012	SEC-C Motif Domain Protein
BGK55_21170	COG0730	response to heat
BGK55_21190	COG0302	gtp cyclohydrolase
BGK55_21205	COG1566	PFAM secretion protein HlyD family protein
BGK55_21215	COG1289	transmembrane transporter activity
BGK55_21220	COG0477	Major facilitator Superfamily
BGK55_21225	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BGK55_21245	COG4691	Plasmid stability protein
BGK55_21250	COG1487	ribonuclease activity
BGK55_21290	COG1074	ATP-dependent DNA helicase activity
BGK55_21295	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BGK55_21310	COG1127	ABC transporter
BGK55_21315	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BGK55_21320	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BGK55_21335	COG2853	Lipoprotein
BGK55_21345	COG0386	Belongs to the glutathione peroxidase family
BGK55_21355	COG1322	Protein conserved in bacteria
BGK55_21360	COG0604	alcohol dehydrogenase
BGK55_21365	COG0583	DNA-binding transcription factor activity
BGK55_21375	COG0625	glutathione transferase activity
BGK55_21385	COG0531	amino acid
BGK55_21400	COG3706	GGDEF domain
BGK55_21420	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BGK55_21425	COG0861	Integral membrane protein TerC family
BGK55_21435	COG0584	glycerophosphoryl diester phosphodiesterase
BGK55_21450	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BGK55_21455	COG0726	polysaccharide deacetylase
BGK55_21460	COG0706	membrane insertase activity
BGK55_21465	COG0594	ribonuclease P activity
BGK55_21470	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BGK55_21480	COG3318	Belongs to the UPF0149 family
BGK55_21480	COG3012	SEC-C Motif Domain Protein
BGK55_21595	COG1192	Involved in chromosome partitioning
BGK55_21635	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BGK55_21655	COG2963	transposase activity
BGK55_21660	COG2801	Transposase and inactivated derivatives
BGK55_21680	COG2801	Transposase and inactivated derivatives
BGK55_21730	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BGK55_21785	COG3318	Belongs to the UPF0149 family
BGK55_21785	COG3012	SEC-C Motif Domain Protein
BGK55_21805	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BGK55_21870	COG4456	Virulence-associated protein
BGK55_21920	COG2801	Transposase and inactivated derivatives
BGK55_21930	COG2951	lytic endotransglycosylase activity
BGK55_21955	COG3318	Belongs to the UPF0149 family
BGK55_21955	COG3012	SEC-C Motif Domain Protein
BGK55_21975	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BGK55_21990	COG1192	Involved in chromosome partitioning