locus-tag class description APY29_00005 PF00308 Bacterial dnaA protein APY29_00005 PF11638 DnaA N-terminal domain APY29_00005 PF08299 Bacterial dnaA protein helix-turn-helix APY29_00010 PF02767 DNA polymerase III beta subunit, central domain APY29_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain APY29_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain APY29_00015 PF02463 RecF/RecN/SMC N terminal domain APY29_00020 PF01751 Toprim domain APY29_00020 PF00204 DNA gyrase B APY29_00020 PF00986 DNA gyrase B subunit, carboxyl terminus APY29_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_00020 PF18053 DNA gyrase B subunit insert domain APY29_00030 PF01435 Peptidase family M48 APY29_00040 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_00045 PF01618 MotA/TolQ/ExbB proton channel family APY29_00050 PF02472 Biopolymer transport protein ExbD/TolR APY29_00055 PF02472 Biopolymer transport protein ExbD/TolR APY29_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APY29_00070 PF13091 PLD-like domain APY29_00070 PF13396 Phospholipase_D-nuclease N-terminal APY29_00110 PF04002 RadC-like JAB domain APY29_00120 PF01527 Transposase APY29_00125 PF13683 Integrase core domain APY29_00125 PF13276 HTH-like domain APY29_00185 PF13180 PDZ domain APY29_00185 PF03572 Peptidase family S41 APY29_00190 PF01551 Peptidase family M23 APY29_00200 PF04389 Peptidase family M28 APY29_00210 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_00215 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_00225 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_00230 PF08240 Alcohol dehydrogenase GroES-like domain APY29_00230 PF00107 Zinc-binding dehydrogenase APY29_00235 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APY29_00235 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_00240 PF04898 Glutamate synthase central domain APY29_00240 PF00310 Glutamine amidotransferases class-II APY29_00240 PF01645 Conserved region in glutamate synthase APY29_00240 PF01493 GXGXG motif APY29_00285 PF02397 Bacterial sugar transferase APY29_00290 PF02350 UDP-N-acetylglucosamine 2-epimerase APY29_00300 PF03808 Glycosyl transferase WecB/TagA/CpsF family APY29_00305 PF13439 Glycosyltransferase Family 4 APY29_00305 PF00534 Glycosyl transferases group 1 APY29_00325 PF00733 Asparagine synthase APY29_00325 PF13537 Glutamine amidotransferase domain APY29_00340 PF16363 GDP-mannose 4,6 dehydratase APY29_00355 PF00664 ABC transporter transmembrane region APY29_00355 PF00005 ABC transporter APY29_00370 PF13537 Glutamine amidotransferase domain APY29_00370 PF00733 Asparagine synthase APY29_00385 PF02603 HPr Serine kinase N terminus APY29_00385 PF07475 HPr Serine kinase C-terminal domain APY29_00390 PF00685 Sulfotransferase domain APY29_00465 PF09369 Domain of unknown function (DUF1998) APY29_00465 PF00271 Helicase conserved C-terminal domain APY29_00465 PF00270 DEAD/DEAH box helicase APY29_00470 PF03006 Haemolysin-III related APY29_00485 PF00106 short chain dehydrogenase APY29_00495 PF03466 LysR substrate binding domain APY29_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_00520 PF00294 pfkB family carbohydrate kinase APY29_00530 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase APY29_00530 PF07055 Enoyl reductase FAD binding domain APY29_00530 PF12241 Trans-2-enoyl-CoA reductase catalytic region APY29_00535 PF00486 Transcriptional regulatory protein, C terminal APY29_00535 PF18500 CadC C-terminal domain 1 APY29_00555 PF00072 Response regulator receiver domain APY29_00555 PF00196 Bacterial regulatory proteins, luxR family APY29_00560 PF07730 Histidine kinase APY29_00565 PF00144 Beta-lactamase APY29_00570 PF01070 FMN-dependent dehydrogenase APY29_00575 PF02735 Ku70/Ku80 beta-barrel domain APY29_00625 PF07883 Cupin domain APY29_00635 PF07715 TonB-dependent Receptor Plug Domain APY29_00635 PF00593 TonB dependent receptor APY29_00640 PF00155 Aminotransferase class I and II APY29_00645 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APY29_00675 PF07726 ATPase family associated with various cellular activities (AAA) APY29_00675 PF17863 AAA lid domain APY29_00725 PF00085 Thioredoxin APY29_00745 PF00293 NUDIX domain APY29_00745 PF13344 Haloacid dehalogenase-like hydrolase APY29_00775 PF11896 Domain of unknown function (DUF3416) APY29_00775 PF00128 Alpha amylase, catalytic domain APY29_00780 PF00128 Alpha amylase, catalytic domain APY29_00780 PF16657 Maltogenic Amylase, C-terminal domain APY29_00785 PF02806 Alpha amylase, C-terminal all-beta domain APY29_00785 PF00128 Alpha amylase, catalytic domain APY29_00785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_00795 PF03377 TAL effector repeat APY29_00800 PF03377 TAL effector repeat APY29_00865 PF03524 Conjugal transfer protein APY29_00870 PF03743 Bacterial conjugation TrbI-like protein APY29_00875 PF00437 Type II/IV secretion system protein APY29_00880 PF01464 Transglycosylase SLT domain APY29_00905 PF18272 single-stranded DNA binding TraI N-terminal subdomain APY29_00905 PF08751 TrwC relaxase APY29_00905 PF07057 DNA helicase TraI APY29_00905 PF07057 DNA helicase TraI APY29_00905 PF18340 DNA relaxase TraI 2B/2B-like domain APY29_00905 PF08751 TrwC relaxase APY29_00905 PF18340 DNA relaxase TraI 2B/2B-like domain APY29_00905 PF18272 single-stranded DNA binding TraI N-terminal subdomain APY29_00935 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ APY29_00940 PF04221 RelB antitoxin APY29_00970 PF03377 TAL effector repeat APY29_00995 PF13570 PQQ-like domain APY29_00995 PF13360 PQQ-like domain APY29_00995 PF01011 PQQ enzyme repeat APY29_01010 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain APY29_01010 PF06165 Glycosyltransferase family 36 APY29_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_01025 PF00512 His Kinase A (phospho-acceptor) domain APY29_01030 PF02659 Putative manganese efflux pump APY29_01040 PF01614 Bacterial transcriptional regulator APY29_01040 PF09339 IclR helix-turn-helix domain APY29_01045 PF07690 Major Facilitator Superfamily APY29_01050 PF05336 L-rhamnose mutarotase APY29_01055 PF13378 Enolase C-terminal domain-like APY29_01055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_01060 PF01557 Fumarylacetoacetate (FAA) hydrolase family APY29_01075 PF00248 Aldo/keto reductase family APY29_01110 PF00072 Response regulator receiver domain APY29_01110 PF00196 Bacterial regulatory proteins, luxR family APY29_01115 PF13193 AMP-binding enzyme C-terminal domain APY29_01115 PF16177 Acetyl-coenzyme A synthetase N-terminus APY29_01115 PF00501 AMP-binding enzyme APY29_01125 PF04341 Protein of unknown function, DUF485 APY29_01130 PF00474 Sodium:solute symporter family APY29_01140 PF09312 SurA N-terminal domain APY29_01140 PF00639 PPIC-type PPIASE domain APY29_01150 PF00480 ROK family APY29_01155 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_01165 PF04226 Transglycosylase associated protein APY29_01175 PF01648 4'-phosphopantetheinyl transferase superfamily APY29_01180 PF16655 PhoD-like phosphatase, N-terminal domain APY29_01180 PF09423 PhoD-like phosphatase APY29_01185 PF09423 PhoD-like phosphatase APY29_01185 PF16655 PhoD-like phosphatase, N-terminal domain APY29_01190 PF02527 rRNA small subunit methyltransferase G APY29_01210 PF13533 Biotin-lipoyl like APY29_01220 PF00873 AcrB/AcrD/AcrF family APY29_01225 PF00830 Ribosomal L28 family APY29_01230 PF00471 Ribosomal protein L33 APY29_01235 PF04909 Amidohydrolase APY29_01240 PF04303 PrpF protein APY29_01245 PF03737 Aldolase/RraA APY29_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_01250 PF03466 LysR substrate binding domain APY29_01255 PF13091 PLD-like domain APY29_01255 PF13396 Phospholipase_D-nuclease N-terminal APY29_01270 PF00580 UvrD/REP helicase N-terminal domain APY29_01270 PF13361 UvrD-like helicase C-terminal domain APY29_01280 PF12464 Maltose acetyltransferase APY29_01280 PF14602 Hexapeptide repeat of succinyl-transferase APY29_01305 PF05638 Type VI secretion system effector, Hcp APY29_01330 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_01330 PF17871 AAA lid domain APY29_01330 PF00004 ATPase family associated with various cellular activities (AAA) APY29_01330 PF07724 AAA domain (Cdc48 subfamily) APY29_01365 PF00328 Histidine phosphatase superfamily (branch 2) APY29_01380 PF04542 Sigma-70 region 2 APY29_01380 PF08281 Sigma-70, region 4 APY29_01390 PF00069 Protein kinase domain APY29_01390 PF03793 PASTA domain APY29_01405 PF04717 Type VI secretion system, phage-baseplate injector APY29_01445 PF03793 PASTA domain APY29_01445 PF00069 Protein kinase domain APY29_01475 PF01612 3'-5' exonuclease APY29_01475 PF00476 DNA polymerase family A APY29_01475 PF01367 5'-3' exonuclease, C-terminal SAM fold APY29_01475 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APY29_01485 PF01218 Coproporphyrinogen III oxidase APY29_01500 PF07676 WD40-like Beta Propeller Repeat APY29_01500 PF00326 Prolyl oligopeptidase family APY29_01520 PF04820 Tryptophan halogenase APY29_01525 PF00550 Phosphopantetheine attachment site APY29_01535 PF01553 Acyltransferase APY29_01540 PF07977 FabA-like domain APY29_01595 PF00535 Glycosyl transferase family 2 APY29_01605 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_01605 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_01610 PF05166 YcgL domain APY29_01625 PF00723 Glycosyl hydrolases family 15 APY29_01630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APY29_01630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APY29_01635 PF00999 Sodium/hydrogen exchanger family APY29_01635 PF02254 TrkA-N domain APY29_01640 PF00194 Eukaryotic-type carbonic anhydrase APY29_01645 PF01769 Divalent cation transporter APY29_01645 PF00571 CBS domain APY29_01645 PF03448 MgtE intracellular N domain APY29_01650 PF13607 Succinyl-CoA ligase like flavodoxin domain APY29_01650 PF13380 CoA binding domain APY29_01650 PF00583 Acetyltransferase (GNAT) family APY29_01660 PF02867 Ribonucleotide reductase, barrel domain APY29_01660 PF03477 ATP cone domain APY29_01660 PF00317 Ribonucleotide reductase, all-alpha domain APY29_01665 PF00268 Ribonucleotide reductase, small chain APY29_01695 PF02558 Ketopantoate reductase PanE/ApbA APY29_01695 PF08546 Ketopantoate reductase PanE/ApbA C terminal APY29_01705 PF01061 ABC-2 type transporter APY29_01710 PF00005 ABC transporter APY29_01715 PF00970 Oxidoreductase FAD-binding domain APY29_01715 PF00175 Oxidoreductase NAD-binding domain APY29_01715 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_01720 PF12833 Helix-turn-helix domain APY29_01720 PF01965 DJ-1/PfpI family APY29_01730 PF00593 TonB dependent receptor APY29_01730 PF07715 TonB-dependent Receptor Plug Domain APY29_01740 PF16916 Dimerisation domain of Zinc Transporter APY29_01740 PF01545 Cation efflux family APY29_01745 PF02583 Metal-sensitive transcriptional repressor APY29_01760 PF01381 Helix-turn-helix APY29_01770 PF00005 ABC transporter APY29_01785 PF04820 Tryptophan halogenase APY29_01810 PF02798 Glutathione S-transferase, N-terminal domain APY29_01810 PF00043 Glutathione S-transferase, C-terminal domain APY29_01815 PF00326 Prolyl oligopeptidase family APY29_01815 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_01855 PF00490 Delta-aminolevulinic acid dehydratase APY29_01865 PF03466 LysR substrate binding domain APY29_01865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_01875 PF00258 Flavodoxin APY29_01875 PF00175 Oxidoreductase NAD-binding domain APY29_01875 PF00667 FAD binding domain APY29_01885 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APY29_01885 PF08501 Shikimate dehydrogenase substrate binding domain APY29_01885 PF01488 Shikimate / quinate 5-dehydrogenase APY29_01900 PF13307 Helicase C-terminal domain APY29_01900 PF06733 DEAD_2 APY29_01905 PF00199 Catalase APY29_01905 PF06628 Catalase-related immune-responsive APY29_01920 PF01207 Dihydrouridine synthase (Dus) APY29_01930 PF00072 Response regulator receiver domain APY29_01930 PF00486 Transcriptional regulatory protein, C terminal APY29_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_01935 PF00672 HAMP domain APY29_01935 PF00512 His Kinase A (phospho-acceptor) domain APY29_01950 PF06167 Glucose-regulated metallo-peptidase M90 APY29_01960 PF02237 Biotin protein ligase C terminal domain APY29_01960 PF08279 HTH domain APY29_01960 PF03099 Biotin/lipoate A/B protein ligase family APY29_01965 PF03309 Type III pantothenate kinase APY29_02000 PF02223 Thymidylate kinase APY29_02025 PF00491 Arginase family APY29_02040 PF05532 CsbD-like APY29_02045 PF00579 tRNA synthetases class I (W and Y) APY29_02050 PF00753 Metallo-beta-lactamase superfamily APY29_02065 PF00892 EamA-like transporter family APY29_02070 PF00892 EamA-like transporter family APY29_02090 PF00005 ABC transporter APY29_02095 PF13533 Biotin-lipoyl like APY29_02100 PF07730 Histidine kinase APY29_02105 PF00196 Bacterial regulatory proteins, luxR family APY29_02105 PF00072 Response regulator receiver domain APY29_02120 PF00199 Catalase APY29_02125 PF04542 Sigma-70 region 2 APY29_02125 PF08281 Sigma-70, region 4 APY29_02135 PF00883 Cytosol aminopeptidase family, catalytic domain APY29_02135 PF02789 Cytosol aminopeptidase family, N-terminal domain APY29_02140 PF13419 Haloacid dehalogenase-like hydrolase APY29_02145 PF01594 AI-2E family transporter APY29_02165 PF00595 PDZ domain APY29_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_02185 PF08521 Two-component sensor kinase N-terminal APY29_02185 PF00512 His Kinase A (phospho-acceptor) domain APY29_02190 PF00486 Transcriptional regulatory protein, C terminal APY29_02190 PF00072 Response regulator receiver domain APY29_02195 PF08338 Domain of unknown function (DUF1731) APY29_02195 PF01370 NAD dependent epimerase/dehydratase family APY29_02235 PF01139 tRNA-splicing ligase RtcB APY29_02255 PF00440 Bacterial regulatory proteins, tetR family APY29_02260 PF00970 Oxidoreductase FAD-binding domain APY29_02260 PF00175 Oxidoreductase NAD-binding domain APY29_02260 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_02265 PF00487 Fatty acid desaturase APY29_02270 PF12792 CSS motif domain associated with EAL APY29_02270 PF00563 EAL domain APY29_02285 PF13335 Magnesium chelatase, subunit ChlI C-terminal APY29_02285 PF01078 Magnesium chelatase, subunit ChlI APY29_02290 PF04380 Membrane fusogenic activity APY29_02295 PF00543 Nitrogen regulatory protein P-II APY29_02325 PF17284 Spermidine synthase tetramerisation domain APY29_02330 PF17810 Arginine decarboxylase helical bundle domain APY29_02330 PF17944 Arginine decarboxylase C-terminal helical extension APY29_02330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY29_02340 PF00550 Phosphopantetheine attachment site APY29_02340 PF00501 AMP-binding enzyme APY29_02340 PF13193 AMP-binding enzyme C-terminal domain APY29_02340 PF00975 Thioesterase domain APY29_02340 PF00668 Condensation domain APY29_02345 PF03033 Glycosyltransferase family 28 N-terminal domain APY29_02355 PF00106 short chain dehydrogenase APY29_02370 PF05746 DALR anticodon binding domain APY29_02370 PF00750 tRNA synthetases class I (R) APY29_02370 PF03485 Arginyl tRNA synthetase N terminal domain APY29_02375 PF04002 RadC-like JAB domain APY29_02380 PF04127 DNA / pantothenate metabolism flavoprotein APY29_02380 PF02441 Flavoprotein APY29_02385 PF00692 dUTPase APY29_02405 PF00535 Glycosyl transferase family 2 APY29_02410 PF01370 NAD dependent epimerase/dehydratase family APY29_02420 PF02195 ParB-like nuclease domain APY29_02420 PF17762 HTH domain found in ParB protein APY29_02425 PF13614 AAA domain APY29_02435 PF00156 Phosphoribosyl transferase domain APY29_02440 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_02445 PF07690 Major Facilitator Superfamily APY29_02455 PF03702 Anhydro-N-acetylmuramic acid kinase APY29_02460 PF04225 Opacity-associated protein A LysM-like domain APY29_02460 PF01551 Peptidase family M23 APY29_02465 PF00579 tRNA synthetases class I (W and Y) APY29_02500 PF14850 DNA-binding domain of Proline dehydrogenase APY29_02500 PF01619 Proline dehydrogenase APY29_02500 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APY29_02500 PF00171 Aldehyde dehydrogenase family APY29_02510 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APY29_02510 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APY29_02515 PF00115 Cytochrome C and Quinol oxidase polypeptide I APY29_02520 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APY29_02525 PF00510 Cytochrome c oxidase subunit III APY29_02550 PF01040 UbiA prenyltransferase family APY29_02560 PF13593 SBF-like CPA transporter family (DUF4137) APY29_02565 PF10410 DnaB-helicase binding domain of primase APY29_02565 PF08278 DNA primase DnaG DnaB-binding APY29_02565 PF01807 CHC2 zinc finger APY29_02565 PF08275 DNA primase catalytic core, N-terminal domain APY29_02570 PF03631 Virulence factor BrkB APY29_02575 PF09424 Yqey-like protein APY29_02580 PF01165 Ribosomal protein S21 APY29_02585 PF00814 Glycoprotease family APY29_02590 PF02152 Dihydroneopterin aldolase APY29_02595 PF14310 Fibronectin type III-like domain APY29_02595 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_02595 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_02600 PF07995 Glucose / Sorbosone dehydrogenase APY29_02605 PF05360 yiaA/B two helix domain APY29_02620 PF13520 Amino acid permease APY29_02630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_02630 PF13378 Enolase C-terminal domain-like APY29_02640 PF01510 N-acetylmuramoyl-L-alanine amidase APY29_02645 PF01427 D-ala-D-ala dipeptidase APY29_02685 PF07063 Domain of unknown function (DUF1338) APY29_02690 PF00873 AcrB/AcrD/AcrF family APY29_02695 PF00873 AcrB/AcrD/AcrF family APY29_02700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_02705 PF01546 Peptidase family M20/M25/M40 APY29_02705 PF07687 Peptidase dimerisation domain APY29_02710 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APY29_02710 PF14489 QueF-like protein APY29_02725 PF03971 Monomeric isocitrate dehydrogenase APY29_02735 PF03466 LysR substrate binding domain APY29_02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_02740 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) APY29_02750 PF07498 Rho termination factor, N-terminal domain APY29_02750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_02750 PF07497 Rho termination factor, RNA-binding domain APY29_02755 PF00085 Thioredoxin APY29_02760 PF00270 DEAD/DEAH box helicase APY29_02760 PF00271 Helicase conserved C-terminal domain APY29_02760 PF12300 ATP-dependent RNA helicase RhlB APY29_02765 PF00005 ABC transporter APY29_02770 PF18075 FtsX extracellular domain APY29_02775 PF01339 CheB methylesterase APY29_02775 PF00072 Response regulator receiver domain APY29_02780 PF03167 Uracil DNA glycosylase superfamily APY29_02785 PF04545 Sigma-70, region 4 APY29_02785 PF04542 Sigma-70 region 2 APY29_02790 PF03458 UPF0126 domain APY29_02795 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_02810 PF13417 Glutathione S-transferase, N-terminal domain APY29_02810 PF00043 Glutathione S-transferase, C-terminal domain APY29_02815 PF17764 3′ DNA-binding domain (3′BD) APY29_02815 PF18074 Primosomal protein N C-terminal domain APY29_02815 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APY29_02815 PF00270 DEAD/DEAH box helicase APY29_02815 PF00271 Helicase conserved C-terminal domain APY29_02835 PF01554 MatE APY29_02840 PF01343 Peptidase family S49 APY29_02865 PF01300 Telomere recombination APY29_02870 PF01751 Toprim domain APY29_02870 PF01131 DNA topoisomerase APY29_02870 PF13368 Topoisomerase C-terminal repeat APY29_02880 PF00114 Pilin (bacterial filament) APY29_02880 PF07963 Prokaryotic N-terminal methylation motif APY29_02885 PF04361 Protein of unknown function (DUF494) APY29_02890 PF02481 DNA recombination-mediator protein A APY29_02890 PF17782 DprA winged helix domain APY29_02895 PF01476 LysM domain APY29_02900 PF01327 Polypeptide deformylase APY29_02905 PF02911 Formyl transferase, C-terminal domain APY29_02905 PF00551 Formyl transferase APY29_02910 PF01189 16S rRNA methyltransferase RsmB/F APY29_02910 PF01029 NusB family APY29_02925 PF00535 Glycosyl transferase family 2 APY29_02945 PF00925 GTP cyclohydrolase II APY29_02960 PF03279 Bacterial lipid A biosynthesis acyltransferase APY29_02965 PF02580 D-Tyr-tRNA(Tyr) deacylase APY29_02970 PF04546 Sigma-70, non-essential region APY29_02970 PF03979 Sigma-70 factor, region 1.1 APY29_02970 PF04545 Sigma-70, region 4 APY29_02970 PF00140 Sigma-70 factor, region 1.2 APY29_02970 PF04542 Sigma-70 region 2 APY29_02970 PF04539 Sigma-70 region 3 APY29_02985 PF00589 Phage integrase family APY29_02985 PF13356 Arm DNA-binding domain APY29_02990 PF12728 Helix-turn-helix domain APY29_03020 PF00271 Helicase conserved C-terminal domain APY29_03020 PF00176 SNF2 family N-terminal domain APY29_03050 PF00557 Metallopeptidase family M24 APY29_03095 PF02525 Flavodoxin-like fold APY29_03100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_03100 PF03466 LysR substrate binding domain APY29_03120 PF00005 ABC transporter APY29_03135 PF00593 TonB dependent receptor APY29_03135 PF07715 TonB-dependent Receptor Plug Domain APY29_03180 PF13823 Alcohol dehydrogenase GroES-associated APY29_03180 PF08240 Alcohol dehydrogenase GroES-like domain APY29_03180 PF00107 Zinc-binding dehydrogenase APY29_03195 PF00664 ABC transporter transmembrane region APY29_03195 PF00005 ABC transporter APY29_03205 PF03275 UDP-galactopyranose mutase APY29_03215 PF16363 GDP-mannose 4,6 dehydratase APY29_03235 PF02322 Cytochrome bd terminal oxidase subunit II APY29_03240 PF01654 Cytochrome bd terminal oxidase subunit I APY29_03250 PF00072 Response regulator receiver domain APY29_03250 PF02954 Bacterial regulatory protein, Fis family APY29_03250 PF00158 Sigma-54 interaction domain APY29_03285 PF05067 Manganese containing catalase APY29_03290 PF05974 Domain of unknown function (DUF892) APY29_03300 PF01527 Transposase APY29_03305 PF13333 Integrase core domain APY29_03305 PF00665 Integrase core domain APY29_03305 PF13276 HTH-like domain APY29_03315 PF02743 Cache domain APY29_03315 PF06580 Histidine kinase APY29_03315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03315 PF00672 HAMP domain APY29_03320 PF00072 Response regulator receiver domain APY29_03320 PF04397 LytTr DNA-binding domain APY29_03330 PF13520 Amino acid permease APY29_03350 PF05649 Peptidase family M13 APY29_03350 PF01431 Peptidase family M13 APY29_03360 PF00248 Aldo/keto reductase family APY29_03365 PF03358 NADPH-dependent FMN reductase APY29_03370 PF03466 LysR substrate binding domain APY29_03370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_03380 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY29_03390 PF03167 Uracil DNA glycosylase superfamily APY29_03395 PF02469 Fasciclin domain APY29_03400 PF00999 Sodium/hydrogen exchanger family APY29_03405 PF00005 ABC transporter APY29_03410 PF01061 ABC-2 type transporter APY29_03435 PF13677 Membrane MotB of proton-channel complex MotA/MotB APY29_03435 PF00691 OmpA family APY29_03440 PF01618 MotA/TolQ/ExbB proton channel family APY29_03450 PF01641 SelR domain APY29_03460 PF01037 Lrp/AsnC ligand binding domain APY29_03465 PF01266 FAD dependent oxidoreductase APY29_03470 PF00842 Alanine racemase, C-terminal domain APY29_03470 PF01168 Alanine racemase, N-terminal domain APY29_03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03490 PF00512 His Kinase A (phospho-acceptor) domain APY29_03490 PF00989 PAS fold APY29_03500 PF07995 Glucose / Sorbosone dehydrogenase APY29_03510 PF05175 Methyltransferase small domain APY29_03510 PF08468 Methyltransferase small domain N-terminal APY29_03515 PF01479 S4 domain APY29_03515 PF00849 RNA pseudouridylate synthase APY29_03520 PF13419 Haloacid dehalogenase-like hydrolase APY29_03545 PF00072 Response regulator receiver domain APY29_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03545 PF00512 His Kinase A (phospho-acceptor) domain APY29_03545 PF18415 Histidine kinase receptor ArcB trans-membrane domain APY29_03545 PF01627 Hpt domain APY29_03545 PF00989 PAS fold APY29_03555 PF04461 Protein of unknown function (DUF520) APY29_03560 PF00892 EamA-like transporter family APY29_03565 PF09383 NIL domain APY29_03565 PF00005 ABC transporter APY29_03570 PF00528 Binding-protein-dependent transport system inner membrane component APY29_03575 PF03180 NLPA lipoprotein APY29_03620 PF02817 e3 binding domain APY29_03620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY29_03620 PF00364 Biotin-requiring enzyme APY29_03630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY29_03630 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_03650 PF00119 ATP synthase A chain APY29_03655 PF00137 ATP synthase subunit C APY29_03660 PF00430 ATP synthase B/B' CF(0) APY29_03665 PF00213 ATP synthase delta (OSCP) subunit APY29_03670 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY29_03670 PF00306 ATP synthase alpha/beta chain, C terminal domain APY29_03670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_03675 PF00231 ATP synthase APY29_03680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_03680 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY29_03685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APY29_03685 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APY29_03700 PF12804 MobA-like NTP transferase domain APY29_03700 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_03700 PF14602 Hexapeptide repeat of succinyl-transferase APY29_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03705 PF00512 His Kinase A (phospho-acceptor) domain APY29_03710 PF02954 Bacterial regulatory protein, Fis family APY29_03710 PF00072 Response regulator receiver domain APY29_03710 PF00158 Sigma-54 interaction domain APY29_03720 PF02687 FtsX-like permease family APY29_03720 PF12704 MacB-like periplasmic core domain APY29_03725 PF12704 MacB-like periplasmic core domain APY29_03725 PF02687 FtsX-like permease family APY29_03730 PF00005 ABC transporter APY29_03730 PF02687 FtsX-like permease family APY29_03730 PF12704 MacB-like periplasmic core domain APY29_03735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_03740 PF01380 SIS domain APY29_03755 PF13333 Integrase core domain APY29_03755 PF00665 Integrase core domain APY29_03755 PF13276 HTH-like domain APY29_03760 PF01527 Transposase APY29_03775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_03785 PF07732 Multicopper oxidase APY29_03785 PF07731 Multicopper oxidase APY29_03785 PF00394 Multicopper oxidase APY29_03800 PF01432 Peptidase family M3 APY29_03810 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_03810 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_03815 PF07977 FabA-like domain APY29_03820 PF00817 impB/mucB/samB family APY29_03820 PF11799 impB/mucB/samB family C-terminal domain APY29_03825 PF13419 Haloacid dehalogenase-like hydrolase APY29_03830 PF07715 TonB-dependent Receptor Plug Domain APY29_03830 PF00593 TonB dependent receptor APY29_03835 PF00756 Putative esterase APY29_03845 PF13185 GAF domain APY29_03860 PF01242 6-pyruvoyl tetrahydropterin synthase APY29_03865 PF00593 TonB dependent receptor APY29_03865 PF07715 TonB-dependent Receptor Plug Domain APY29_03875 PF00271 Helicase conserved C-terminal domain APY29_03875 PF00270 DEAD/DEAH box helicase APY29_03885 PF02798 Glutathione S-transferase, N-terminal domain APY29_03885 PF14497 Glutathione S-transferase, C-terminal domain APY29_03890 PF00437 Type II/IV secretion system protein APY29_03910 PF00291 Pyridoxal-phosphate dependent enzyme APY29_03910 PF00571 CBS domain APY29_03915 PF01053 Cys/Met metabolism PLP-dependent enzyme APY29_03925 PF00534 Glycosyl transferases group 1 APY29_03925 PF13439 Glycosyltransferase Family 4 APY29_03935 PF00005 ABC transporter APY29_03940 PF13847 Methyltransferase domain APY29_03940 PF00069 Protein kinase domain APY29_03945 PF13477 Glycosyl transferase 4-like APY29_03945 PF00534 Glycosyl transferases group 1 APY29_03950 PF16363 GDP-mannose 4,6 dehydratase APY29_03955 PF16363 GDP-mannose 4,6 dehydratase APY29_03985 PF05598 Transposase domain (DUF772) APY29_04005 PF00535 Glycosyl transferase family 2 APY29_04015 PF01012 Electron transfer flavoprotein domain APY29_04015 PF00766 Electron transfer flavoprotein FAD-binding domain APY29_04020 PF01012 Electron transfer flavoprotein domain APY29_04025 PF16363 GDP-mannose 4,6 dehydratase APY29_04030 PF00483 Nucleotidyl transferase APY29_04035 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APY29_04040 PF04321 RmlD substrate binding domain APY29_04045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY29_04045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY29_04045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY29_04050 PF01050 Mannose-6-phosphate isomerase APY29_04050 PF00483 Nucleotidyl transferase APY29_04055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY29_04055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY29_04055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY29_04055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY29_04060 PF01144 Coenzyme A transferase APY29_04065 PF01144 Coenzyme A transferase APY29_04085 PF03886 ABC-type transport auxiliary lipoprotein component APY29_04085 PF02470 MlaD protein APY29_04090 PF00005 ABC transporter APY29_04095 PF02405 Permease MlaE APY29_04105 PF00816 H-NS histone family APY29_04110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY29_04110 PF03129 Anticodon binding domain APY29_04110 PF04073 Aminoacyl-tRNA editing domain APY29_04120 PF01066 CDP-alcohol phosphatidyltransferase APY29_04135 PF00544 Pectate lyase APY29_04140 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APY29_04140 PF01464 Transglycosylase SLT domain APY29_04150 PF10458 Valyl tRNA synthetase tRNA binding arm APY29_04150 PF00133 tRNA synthetases class I (I, L, M and V) APY29_04150 PF08264 Anticodon-binding domain of tRNA APY29_04175 PF03739 Lipopolysaccharide export system permease LptF/LptG APY29_04190 PF00589 Phage integrase family APY29_04190 PF02899 Phage integrase, N-terminal SAM-like domain APY29_04195 PF10411 Disulfide bond isomerase protein N-terminus APY29_04195 PF13098 Thioredoxin-like domain APY29_04200 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APY29_04200 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APY29_04200 PF02769 AIR synthase related protein, C-terminal domain APY29_04205 PF13018 Extended Signal Peptide of Type V secretion system APY29_04205 PF03895 YadA-like membrane anchor domain APY29_04205 PF05658 Head domain of trimeric autotransporter adhesin APY29_04205 PF05662 Coiled stalk of trimeric autotransporter adhesin APY29_04210 PF04151 Bacterial pre-peptidase C-terminal domain APY29_04210 PF00082 Subtilase family APY29_04215 PF13018 Extended Signal Peptide of Type V secretion system APY29_04215 PF05662 Coiled stalk of trimeric autotransporter adhesin APY29_04215 PF05658 Head domain of trimeric autotransporter adhesin APY29_04215 PF03895 YadA-like membrane anchor domain APY29_04220 PF00082 Subtilase family APY29_04220 PF04151 Bacterial pre-peptidase C-terminal domain APY29_04225 PF00437 Type II/IV secretion system protein APY29_04225 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_04230 PF00482 Type II secretion system (T2SS), protein F APY29_04235 PF08334 Type II secretion system (T2SS), protein G APY29_04240 PF12019 Type II transport protein GspH APY29_04245 PF07963 Prokaryotic N-terminal methylation motif APY29_04255 PF03934 Type II secretion system (T2SS), protein K APY29_04260 PF05137 Fimbrial assembly protein (PilN) APY29_04265 PF10741 Type II secretion system (T2SS), protein M subtype b APY29_04275 PF00263 Bacterial type II and III secretion system protein APY29_04275 PF03958 Bacterial type II/III secretion system short domain APY29_04280 PF01527 Transposase APY29_04285 PF13276 HTH-like domain APY29_04285 PF13683 Integrase core domain APY29_04295 PF07702 UTRA domain APY29_04295 PF00392 Bacterial regulatory proteins, gntR family APY29_04345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APY29_04345 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APY29_04360 PF07238 PilZ domain APY29_04360 PF00535 Glycosyl transferase family 2 APY29_04360 PF03552 Cellulose synthase APY29_04365 PF03170 Bacterial cellulose synthase subunit APY29_04370 PF01270 Glycosyl hydrolases family 8 APY29_04375 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) APY29_04395 PF03960 ArsC family APY29_04400 PF01327 Polypeptide deformylase APY29_04405 PF02645 Uncharacterised protein, DegV family COG1307 APY29_04425 PF01979 Amidohydrolase family APY29_04430 PF01979 Amidohydrolase family APY29_04445 PF00462 Glutaredoxin APY29_04450 PF01522 Polysaccharide deacetylase APY29_04455 PF00593 TonB dependent receptor APY29_04455 PF07715 TonB-dependent Receptor Plug Domain APY29_04475 PF03412 Peptidase C39 family APY29_04475 PF00005 ABC transporter APY29_04475 PF00664 ABC transporter transmembrane region APY29_04495 PF13683 Integrase core domain APY29_04495 PF13276 HTH-like domain APY29_04500 PF01527 Transposase APY29_04525 PF01527 Transposase APY29_04535 PF03193 RsgA GTPase APY29_04550 PF00128 Alpha amylase, catalytic domain APY29_04565 PF00356 Bacterial regulatory proteins, lacI family APY29_04570 PF00106 short chain dehydrogenase APY29_04575 PF03600 Citrate transporter APY29_04585 PF00072 Response regulator receiver domain APY29_04585 PF00486 Transcriptional regulatory protein, C terminal APY29_04590 PF00512 His Kinase A (phospho-acceptor) domain APY29_04590 PF08521 Two-component sensor kinase N-terminal APY29_04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_04600 PF00196 Bacterial regulatory proteins, luxR family APY29_04600 PF00072 Response regulator receiver domain APY29_04615 PF00248 Aldo/keto reductase family APY29_04625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_04625 PF03466 LysR substrate binding domain APY29_04635 PF07690 Major Facilitator Superfamily APY29_04640 PF02743 Cache domain APY29_04640 PF00512 His Kinase A (phospho-acceptor) domain APY29_04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_04655 PF00375 Sodium:dicarboxylate symporter family APY29_04660 PF01515 Phosphate acetyl/butaryl transferase APY29_04660 PF03949 Malic enzyme, NAD binding domain APY29_04660 PF00390 Malic enzyme, N-terminal domain APY29_04685 PF03279 Bacterial lipid A biosynthesis acyltransferase APY29_04690 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APY29_04695 PF02321 Outer membrane efflux protein APY29_04710 PF17151 Periplasmic sensor domain APY29_04710 PF00990 Diguanylate cyclase, GGDEF domain APY29_04715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_04720 PF00330 Aconitase family (aconitate hydratase) APY29_04725 PF00694 Aconitase C-terminal domain APY29_04730 PF00180 Isocitrate/isopropylmalate dehydrogenase APY29_04735 PF08502 LeuA allosteric (dimerisation) domain APY29_04735 PF00682 HMGL-like APY29_04740 PF00291 Pyridoxal-phosphate dependent enzyme APY29_04750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APY29_04750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APY29_04750 PF00205 Thiamine pyrophosphate enzyme, central domain APY29_04755 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APY29_04755 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APY29_04765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_04765 PF02203 Tar ligand binding domain homologue APY29_04765 PF00672 HAMP domain APY29_04770 PF07715 TonB-dependent Receptor Plug Domain APY29_04770 PF00593 TonB dependent receptor APY29_04775 PF13667 ThiC-associated domain APY29_04775 PF01964 Radical SAM ThiC family APY29_04780 PF00486 Transcriptional regulatory protein, C terminal APY29_04780 PF18500 CadC C-terminal domain 1 APY29_04785 PF12833 Helix-turn-helix domain APY29_04790 PF00593 TonB dependent receptor APY29_04790 PF07715 TonB-dependent Receptor Plug Domain APY29_04800 PF00719 Inorganic pyrophosphatase APY29_04810 PF03030 Inorganic H+ pyrophosphatase APY29_04815 PF01527 Transposase APY29_04820 PF13333 Integrase core domain APY29_04820 PF13276 HTH-like domain APY29_04820 PF00665 Integrase core domain APY29_04830 PF00365 Phosphofructokinase APY29_04840 PF02875 Mur ligase family, glutamate ligase domain APY29_04840 PF08245 Mur ligase middle domain APY29_04840 PF01225 Mur ligase family, catalytic domain APY29_04850 PF01062 Bestrophin, RFP-TM, chloride channel APY29_04855 PF01569 PAP2 superfamily APY29_04870 PF00520 Ion transport protein APY29_04870 PF00027 Cyclic nucleotide-binding domain APY29_04875 PF00202 Aminotransferase class-III APY29_04890 PF01593 Flavin containing amine oxidoreductase APY29_04895 PF00034 Cytochrome c APY29_04895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APY29_04905 PF00155 Aminotransferase class I and II APY29_04910 PF00127 Copper binding proteins, plastocyanin/azurin family APY29_04920 PF00202 Aminotransferase class-III APY29_04930 PF02581 Thiamine monophosphate synthase APY29_04935 PF00301 Rubredoxin APY29_04940 PF13369 Transglutaminase-like superfamily APY29_04950 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APY29_04960 PF01812 5-formyltetrahydrofolate cyclo-ligase family APY29_04965 PF05164 Cell division protein ZapA APY29_04975 PF03695 Uncharacterised protein family (UPF0149) APY29_04980 PF05195 Aminopeptidase P, N-terminal domain APY29_04980 PF00557 Metallopeptidase family M24 APY29_04990 PF00557 Metallopeptidase family M24 APY29_05005 PF04055 Radical SAM superfamily APY29_05005 PF06969 HemN C-terminal domain APY29_05010 PF01725 Ham1 family APY29_05020 PF01138 3' exoribonuclease family, domain 1 APY29_05020 PF03725 3' exoribonuclease family, domain 2 APY29_05025 PF08340 Domain of unknown function (DUF1732) APY29_05025 PF03755 YicC-like family, N-terminal region APY29_05030 PF00625 Guanylate kinase APY29_05035 PF01192 RNA polymerase Rpb6 APY29_05040 PF02824 TGS domain APY29_05040 PF04607 Region found in RelA / SpoT proteins APY29_05040 PF13291 ACT domain APY29_05045 PF01042 Endoribonuclease L-PSP APY29_05050 PF00271 Helicase conserved C-terminal domain APY29_05050 PF00270 DEAD/DEAH box helicase APY29_05050 PF17191 RecG wedge domain APY29_05055 PF01156 Inosine-uridine preferring nucleoside hydrolase APY29_05060 PF01197 Ribosomal protein L31 APY29_05065 PF00285 Citrate synthase, C-terminal domain APY29_05075 PF00912 Transglycosylase APY29_05075 PF00905 Penicillin binding protein transpeptidase domain APY29_05075 PF17092 Penicillin-binding protein OB-like domain APY29_05105 PF07726 ATPase family associated with various cellular activities (AAA) APY29_05105 PF17863 AAA lid domain APY29_05125 PF00092 von Willebrand factor type A domain APY29_05125 PF07584 Aerotolerance regulator N-terminal APY29_05135 PF00375 Sodium:dicarboxylate symporter family APY29_05140 PF02780 Transketolase, C-terminal domain APY29_05140 PF00456 Transketolase, thiamine diphosphate binding domain APY29_05140 PF02779 Transketolase, pyrimidine binding domain APY29_05160 PF00593 TonB dependent receptor APY29_05160 PF07715 TonB-dependent Receptor Plug Domain APY29_05215 PF03459 TOBE domain APY29_05215 PF00005 ABC transporter APY29_05220 PF00528 Binding-protein-dependent transport system inner membrane component APY29_05230 PF00753 Metallo-beta-lactamase superfamily APY29_05230 PF04273 Putative phosphatase (DUF442) APY29_05240 PF03922 OmpW family APY29_05245 PF03922 OmpW family APY29_05255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APY29_05255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APY29_05275 PF00162 Phosphoglycerate kinase APY29_05285 PF02887 Pyruvate kinase, alpha/beta domain APY29_05285 PF00224 Pyruvate kinase, barrel domain APY29_05290 PF00274 Fructose-bisphosphate aldolase class-I APY29_05295 PF01661 Macro domain APY29_05305 PF00291 Pyridoxal-phosphate dependent enzyme APY29_05310 PF10414 Sirohaem synthase dimerisation region APY29_05310 PF14824 Sirohaem biosynthesis protein central APY29_05310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY29_05315 PF03466 LysR substrate binding domain APY29_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_05330 PF01627 Hpt domain APY29_05330 PF00512 His Kinase A (phospho-acceptor) domain APY29_05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_05330 PF00072 Response regulator receiver domain APY29_05350 PF01507 Phosphoadenosine phosphosulfate reductase family APY29_05355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APY29_05355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APY29_05360 PF00175 Oxidoreductase NAD-binding domain APY29_05360 PF00258 Flavodoxin APY29_05360 PF00667 FAD binding domain APY29_05365 PF01507 Phosphoadenosine phosphosulfate reductase family APY29_05370 PF00009 Elongation factor Tu GTP binding domain APY29_05375 PF00529 HlyD membrane-fusion protein of T1SS APY29_05375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_05380 PF00873 AcrB/AcrD/AcrF family APY29_05395 PF13276 HTH-like domain APY29_05395 PF13333 Integrase core domain APY29_05395 PF00665 Integrase core domain APY29_05410 PF01433 Peptidase family M1 domain APY29_05410 PF11838 ERAP1-like C-terminal domain APY29_05420 PF08032 RNA 2'-O ribose methyltransferase substrate binding APY29_05420 PF00588 SpoU rRNA Methylase family APY29_05425 PF00135 Carboxylesterase family APY29_05435 PF14508 Glycosyl-hydrolase 97 N-terminal APY29_05435 PF10566 Glycoside hydrolase 97 APY29_05435 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation APY29_05440 PF00703 Glycosyl hydrolases family 2 APY29_05440 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain APY29_05440 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_05450 PF00356 Bacterial regulatory proteins, lacI family APY29_05465 PF01741 Large-conductance mechanosensitive channel, MscL APY29_05485 PF02080 TrkA-C domain APY29_05485 PF03600 Citrate transporter APY29_05490 PF02390 Putative methyltransferase APY29_05495 PF05690 Thiazole biosynthesis protein ThiG APY29_05505 PF00657 GDSL-like Lipase/Acylhydrolase APY29_05505 PF03797 Autotransporter beta-domain APY29_05520 PF05598 Transposase domain (DUF772) APY29_05525 PF01527 Transposase APY29_05570 PF00128 Alpha amylase, catalytic domain APY29_05570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_05575 PF18030 RimK PreATP-grasp domain APY29_05575 PF08443 RimK-like ATP-grasp domain APY29_05585 PF00486 Transcriptional regulatory protein, C terminal APY29_05585 PF00072 Response regulator receiver domain APY29_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_05590 PF00512 His Kinase A (phospho-acceptor) domain APY29_05590 PF00989 PAS fold APY29_05590 PF16736 Single Cache-like APY29_05600 PF01527 Transposase APY29_05605 PF13683 Integrase core domain APY29_05605 PF13276 HTH-like domain APY29_05625 PF01121 Dephospho-CoA kinase APY29_05630 PF01478 Type IV leader peptidase family APY29_05630 PF06750 Bacterial Peptidase A24 N-terminal domain APY29_05635 PF00482 Type II secretion system (T2SS), protein F APY29_05645 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_05645 PF00437 Type II/IV secretion system protein APY29_05650 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_05650 PF00437 Type II/IV secretion system protein APY29_05655 PF02954 Bacterial regulatory protein, Fis family APY29_05655 PF00072 Response regulator receiver domain APY29_05655 PF00158 Sigma-54 interaction domain APY29_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_05665 PF00512 His Kinase A (phospho-acceptor) domain APY29_05670 PF00549 CoA-ligase APY29_05670 PF08442 ATP-grasp domain APY29_05675 PF02629 CoA binding domain APY29_05675 PF00549 CoA-ligase APY29_05690 PF00795 Carbon-nitrogen hydrolase APY29_05690 PF02540 NAD synthase APY29_05700 PF13525 Outer membrane lipoprotein APY29_05705 PF00849 RNA pseudouridylate synthase APY29_05720 PF04134 Protein of unknown function, DUF393 APY29_05725 PF02203 Tar ligand binding domain homologue APY29_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_05725 PF00672 HAMP domain APY29_05730 PF01011 PQQ enzyme repeat APY29_05735 PF00982 Glycosyltransferase family 20 APY29_05740 PF00723 Glycosyl hydrolases family 15 APY29_05745 PF02358 Trehalose-phosphatase APY29_05750 PF07715 TonB-dependent Receptor Plug Domain APY29_05750 PF00593 TonB dependent receptor APY29_05785 PF01541 GIY-YIG catalytic domain APY29_05790 PF07715 TonB-dependent Receptor Plug Domain APY29_05790 PF00593 TonB dependent receptor APY29_05800 PF00248 Aldo/keto reductase family APY29_05805 PF09084 NMT1/THI5 like APY29_05810 PF00528 Binding-protein-dependent transport system inner membrane component APY29_05815 PF00005 ABC transporter APY29_05820 PF02861 Clp amino terminal domain, pathogenicity island component APY29_05820 PF17871 AAA lid domain APY29_05820 PF07724 AAA domain (Cdc48 subfamily) APY29_05820 PF00004 ATPase family associated with various cellular activities (AAA) APY29_05820 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_05825 PF07715 TonB-dependent Receptor Plug Domain APY29_05825 PF00593 TonB dependent receptor APY29_05840 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APY29_05840 PF12557 Cob(I)alamin adenosyltransferase N terminal APY29_05845 PF03186 CobD/Cbib protein APY29_05845 PF17113 Regulatory signalling modulator protein AmpE APY29_05855 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_05855 PF07685 CobB/CobQ-like glutamine amidotransferase domain APY29_05860 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APY29_05865 PF02277 Phosphoribosyltransferase APY29_05875 PF02654 Cobalamin-5-phosphate synthase APY29_05885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APY29_05885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY29_05895 PF07690 Major Facilitator Superfamily APY29_05900 PF04183 IucA / IucC family APY29_05900 PF06276 Ferric iron reductase FhuF-like transporter APY29_05910 PF07660 Secretin and TonB N terminus short domain APY29_05910 PF00593 TonB dependent receptor APY29_05910 PF07715 TonB-dependent Receptor Plug Domain APY29_05935 PF02254 TrkA-N domain APY29_05935 PF00999 Sodium/hydrogen exchanger family APY29_05945 PF00593 TonB dependent receptor APY29_05945 PF07715 TonB-dependent Receptor Plug Domain APY29_05965 PF00593 TonB dependent receptor APY29_05965 PF07715 TonB-dependent Receptor Plug Domain APY29_05980 PF03466 LysR substrate binding domain APY29_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_06000 PF07690 Major Facilitator Superfamily APY29_06015 PF02938 GAD domain APY29_06015 PF01336 OB-fold nucleic acid binding domain APY29_06015 PF00152 tRNA synthetases class II (D, K and N) APY29_06030 PF01709 Transcriptional regulator APY29_06035 PF02075 Crossover junction endodeoxyribonuclease RuvC APY29_06040 PF07499 RuvA, C-terminal domain APY29_06040 PF01330 RuvA N terminal domain APY29_06045 PF02705 K+ potassium transporter APY29_06055 PF05496 Holliday junction DNA helicase RuvB P-loop domain APY29_06055 PF05491 RuvB C-terminal winged helix domain APY29_06055 PF17864 RuvB AAA lid domain APY29_06060 PF03061 Thioesterase superfamily APY29_06065 PF01618 MotA/TolQ/ExbB proton channel family APY29_06070 PF02472 Biopolymer transport protein ExbD/TolR APY29_06080 PF04052 TolB amino-terminal domain APY29_06080 PF07676 WD40-like Beta Propeller Repeat APY29_06085 PF00691 OmpA family APY29_06095 PF04055 Radical SAM superfamily APY29_06105 PF06508 Queuosine biosynthesis protein QueC APY29_06110 PF13581 Histidine kinase-like ATPase domain APY29_06110 PF13426 PAS domain APY29_06110 PF07536 HWE histidine kinase APY29_06130 PF00672 HAMP domain APY29_06130 PF02203 Tar ligand binding domain homologue APY29_06130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_06165 PF00270 DEAD/DEAH box helicase APY29_06165 PF00271 Helicase conserved C-terminal domain APY29_06165 PF00570 HRDC domain APY29_06165 PF09382 RQC domain APY29_06165 PF16124 RecQ zinc-binding APY29_06170 PF00210 Ferritin-like domain APY29_06175 PF00270 DEAD/DEAH box helicase APY29_06175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APY29_06175 PF04408 Helicase associated domain (HA2) APY29_06175 PF11898 Domain of unknown function (DUF3418) APY29_06175 PF00271 Helicase conserved C-terminal domain APY29_06185 PF02685 Glucokinase APY29_06200 PF13186 Iron-sulfur cluster-binding domain APY29_06200 PF04055 Radical SAM superfamily APY29_06205 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APY29_06210 PF03070 TENA/THI-4/PQQC family APY29_06215 PF12706 Beta-lactamase superfamily domain APY29_06220 PF13291 ACT domain APY29_06220 PF02824 TGS domain APY29_06220 PF04607 Region found in RelA / SpoT proteins APY29_06230 PF00535 Glycosyl transferase family 2 APY29_06235 PF14814 Bifunctional transglycosylase second domain APY29_06235 PF00905 Penicillin binding protein transpeptidase domain APY29_06235 PF00912 Transglycosylase APY29_06245 PF04851 Type III restriction enzyme, res subunit APY29_06245 PF13307 Helicase C-terminal domain APY29_06250 PF00814 Glycoprotease family APY29_06255 PF03747 ADP-ribosylglycohydrolase APY29_06265 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APY29_06265 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APY29_06270 PF00072 Response regulator receiver domain APY29_06275 PF00072 Response regulator receiver domain APY29_06280 PF01584 CheW-like domain APY29_06285 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APY29_06285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_06305 PF13302 Acetyltransferase (GNAT) domain APY29_06315 PF01112 Asparaginase APY29_06320 PF03932 CutC family APY29_06350 PF01301 Glycosyl hydrolases family 35 APY29_06355 PF17678 Glycosyl hydrolase family 92 N-terminal domain APY29_06355 PF07971 Glycosyl hydrolase family 92 APY29_06390 PF00665 Integrase core domain APY29_06390 PF13276 HTH-like domain APY29_06390 PF13333 Integrase core domain APY29_06395 PF01527 Transposase APY29_06405 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_06405 PF07691 PA14 domain APY29_06405 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_06405 PF14310 Fibronectin type III-like domain APY29_06415 PF02838 Glycosyl hydrolase family 20, domain 2 APY29_06415 PF00728 Glycosyl hydrolase family 20, catalytic domain APY29_06415 PF07691 PA14 domain APY29_06420 PF00704 Glycosyl hydrolases family 18 APY29_06420 PF01476 LysM domain APY29_06440 PF02685 Glucokinase APY29_06445 PF04452 RNA methyltransferase APY29_06450 PF00202 Aminotransferase class-III APY29_06455 PF00293 NUDIX domain APY29_06460 PF00459 Inositol monophosphatase family APY29_06465 PF03819 MazG nucleotide pyrophosphohydrolase domain APY29_06470 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APY29_06480 PF01571 Aminomethyltransferase folate-binding domain APY29_06480 PF08669 Glycine cleavage T-protein C-terminal barrel domain APY29_06485 PF01597 Glycine cleavage H-protein APY29_06515 PF09317 Domain of unknown function (DUF1974) APY29_06515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_06515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_06520 PF00561 alpha/beta hydrolase fold APY29_06525 PF00440 Bacterial regulatory proteins, tetR family APY29_06550 PF13276 HTH-like domain APY29_06550 PF13683 Integrase core domain APY29_06555 PF01527 Transposase APY29_06565 PF13276 HTH-like domain APY29_06565 PF00665 Integrase core domain APY29_06565 PF13333 Integrase core domain APY29_06570 PF00593 TonB dependent receptor APY29_06570 PF07715 TonB-dependent Receptor Plug Domain APY29_06580 PF01430 Hsp33 protein APY29_06585 PF00912 Transglycosylase APY29_06590 PF00535 Glycosyl transferase family 2 APY29_06595 PF00571 CBS domain APY29_06595 PF00478 IMP dehydrogenase / GMP reductase domain APY29_06600 PF05170 AsmA family APY29_06605 PF03006 Haemolysin-III related APY29_06610 PF16658 Class II release factor RF3, C-terminal domain APY29_06610 PF00009 Elongation factor Tu GTP binding domain APY29_06615 PF01551 Peptidase family M23 APY29_06615 PF08525 Opacity-associated protein A N-terminal motif APY29_06615 PF01476 LysM domain APY29_06620 PF00561 alpha/beta hydrolase fold APY29_06625 PF01053 Cys/Met metabolism PLP-dependent enzyme APY29_06630 PF00696 Amino acid kinase family APY29_06630 PF00742 Homoserine dehydrogenase APY29_06630 PF03447 Homoserine dehydrogenase, NAD binding domain APY29_06640 PF03313 Serine dehydratase alpha chain APY29_06640 PF03315 Serine dehydratase beta chain APY29_06660 PF04264 YceI-like domain APY29_06665 PF00072 Response regulator receiver domain APY29_06665 PF00512 His Kinase A (phospho-acceptor) domain APY29_06665 PF01627 Hpt domain APY29_06665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_06675 PF00672 HAMP domain APY29_06675 PF17149 Periplasmic sensor domain found in signal transduction proteins APY29_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_06675 PF00512 His Kinase A (phospho-acceptor) domain APY29_06675 PF01627 Hpt domain APY29_06675 PF00072 Response regulator receiver domain APY29_06680 PF00072 Response regulator receiver domain APY29_06680 PF01627 Hpt domain APY29_06680 PF00512 His Kinase A (phospho-acceptor) domain APY29_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_06680 PF17149 Periplasmic sensor domain found in signal transduction proteins APY29_06680 PF00672 HAMP domain APY29_06690 PF01208 Uroporphyrinogen decarboxylase (URO-D) APY29_06700 PF01761 3-dehydroquinate synthase APY29_06705 PF01202 Shikimate kinase APY29_06710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APY29_06710 PF01243 Pyridoxamine 5'-phosphate oxidase APY29_06720 PF04012 PspA/IM30 family APY29_06745 PF03738 Glutathionylspermidine synthase preATP-grasp APY29_06760 PF13276 HTH-like domain APY29_06760 PF13333 Integrase core domain APY29_06760 PF00665 Integrase core domain APY29_06765 PF01527 Transposase APY29_06775 PF00376 MerR family regulatory protein APY29_06775 PF09278 MerR, DNA binding APY29_06805 PF04820 Tryptophan halogenase APY29_06810 PF12706 Beta-lactamase superfamily domain APY29_06835 PF00324 Amino acid permease APY29_06840 PF00196 Bacterial regulatory proteins, luxR family APY29_06850 PF00561 alpha/beta hydrolase fold APY29_06860 PF13276 HTH-like domain APY29_06860 PF13683 Integrase core domain APY29_06865 PF01527 Transposase APY29_06875 PF00324 Amino acid permease APY29_06885 PF01654 Cytochrome bd terminal oxidase subunit I APY29_06890 PF02322 Cytochrome bd terminal oxidase subunit II APY29_06895 PF00756 Putative esterase APY29_06900 PF01769 Divalent cation transporter APY29_06900 PF00571 CBS domain APY29_06900 PF03448 MgtE intracellular N domain APY29_06910 PF00381 PTS HPr component phosphorylation site APY29_06920 PF03668 P-loop ATPase protein family APY29_06925 PF02603 HPr Serine kinase N terminus APY29_06925 PF07475 HPr Serine kinase C-terminal domain APY29_06930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APY29_06935 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APY29_06940 PF04963 Sigma-54 factor, core binding domain APY29_06940 PF00309 Sigma-54 factor, Activator interacting domain (AID) APY29_06940 PF04552 Sigma-54, DNA binding domain APY29_06945 PF00005 ABC transporter APY29_06950 PF03968 OstA-like protein APY29_06965 PF00571 CBS domain APY29_06965 PF01380 SIS domain APY29_06970 PF01722 BolA-like protein APY29_06975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APY29_06995 PF00551 Formyl transferase APY29_07010 PF02769 AIR synthase related protein, C-terminal domain APY29_07010 PF00586 AIR synthase related protein, N-terminal domain APY29_07020 PF01594 AI-2E family transporter APY29_07025 PF00308 Bacterial dnaA protein APY29_07030 PF00483 Nucleotidyl transferase APY29_07035 PF01636 Phosphotransferase enzyme family APY29_07065 PF00667 FAD binding domain APY29_07065 PF00258 Flavodoxin APY29_07065 PF00175 Oxidoreductase NAD-binding domain APY29_07070 PF02424 ApbE family APY29_07095 PF18331 PKHD-type hydroxylase C-terminal domain APY29_07095 PF13640 2OG-Fe(II) oxygenase superfamily APY29_07100 PF00593 TonB dependent receptor APY29_07100 PF07715 TonB-dependent Receptor Plug Domain APY29_07105 PF00355 Rieske [2Fe-2S] domain APY29_07115 PF00266 Aminotransferase class-V APY29_07120 PF01458 Uncharacterized protein family (UPF0051) APY29_07125 PF00005 ABC transporter APY29_07130 PF01458 Uncharacterized protein family (UPF0051) APY29_07135 PF02082 Transcriptional regulator APY29_07145 PF01965 DJ-1/PfpI family APY29_07165 PF01551 Peptidase family M23 APY29_07175 PF03807 NADP oxidoreductase coenzyme F420-dependent APY29_07175 PF14748 Pyrroline-5-carboxylate reductase dimerisation APY29_07180 PF01168 Alanine racemase, N-terminal domain APY29_07185 PF00437 Type II/IV secretion system protein APY29_07190 PF00437 Type II/IV secretion system protein APY29_07205 PF13673 Acetyltransferase (GNAT) domain APY29_07205 PF13302 Acetyltransferase (GNAT) domain APY29_07205 PF00958 GMP synthase C terminal domain APY29_07205 PF03352 Methyladenine glycosylase APY29_07205 PF00117 Glutamine amidotransferase class-I APY29_07215 PF02622 Uncharacterized ACR, COG1678 APY29_07220 PF03652 Holliday junction resolvase APY29_07225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APY29_07225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APY29_07230 PF02566 OsmC-like protein APY29_07240 PF02567 Phenazine biosynthesis-like protein APY29_07245 PF02567 Phenazine biosynthesis-like protein APY29_07250 PF00696 Amino acid kinase family APY29_07250 PF01842 ACT domain APY29_07265 PF02875 Mur ligase family, glutamate ligase domain APY29_07265 PF08245 Mur ligase middle domain APY29_07275 PF00348 Polyprenyl synthetase APY29_07280 PF00436 Single-strand binding protein family APY29_07290 PF08659 KR domain APY29_07290 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_07290 PF14765 Polyketide synthase dehydratase APY29_07290 PF08240 Alcohol dehydrogenase GroES-like domain APY29_07290 PF00698 Acyl transferase domain APY29_07290 PF00107 Zinc-binding dehydrogenase APY29_07290 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_07290 PF00550 Phosphopantetheine attachment site APY29_07290 PF16197 Ketoacyl-synthetase C-terminal extension APY29_07295 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_07295 PF01799 [2Fe-2S] binding domain APY29_07295 PF10518 TAT (twin-arginine translocation) pathway signal sequence APY29_07300 PF00941 FAD binding domain in molybdopterin dehydrogenase APY29_07300 PF03450 CO dehydrogenase flavoprotein C-terminal domain APY29_07305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APY29_07305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY29_07310 PF13478 XdhC Rossmann domain APY29_07310 PF02625 XdhC and CoxI family APY29_07355 PF04328 Selenoprotein, putative APY29_07360 PF02554 Carbon starvation protein CstA APY29_07360 PF13722 5TM C-terminal transporter carbon starvation CstA APY29_07365 PF02678 Pirin APY29_07365 PF05726 Pirin C-terminal cupin domain APY29_07380 PF05726 Pirin C-terminal cupin domain APY29_07380 PF02678 Pirin APY29_07390 PF04493 Endonuclease V APY29_07395 PF00300 Histidine phosphatase superfamily (branch 1) APY29_07405 PF05649 Peptidase family M13 APY29_07405 PF01431 Peptidase family M13 APY29_07410 PF13091 PLD-like domain APY29_07415 PF01339 CheB methylesterase APY29_07415 PF00072 Response regulator receiver domain APY29_07420 PF03705 CheR methyltransferase, all-alpha domain APY29_07420 PF01739 CheR methyltransferase, SAM binding domain APY29_07425 PF00990 Diguanylate cyclase, GGDEF domain APY29_07425 PF13426 PAS domain APY29_07425 PF00563 EAL domain APY29_07430 PF01584 CheW-like domain APY29_07435 PF00672 HAMP domain APY29_07435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_07435 PF02203 Tar ligand binding domain homologue APY29_07440 PF09078 CheY binding APY29_07440 PF02895 Signal transducing histidine kinase, homodimeric domain APY29_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_07440 PF01584 CheW-like domain APY29_07440 PF01627 Hpt domain APY29_07470 PF02559 CarD-like/TRCF domain APY29_07470 PF17757 UvrB interaction domain APY29_07470 PF00270 DEAD/DEAH box helicase APY29_07470 PF03461 TRCF domain APY29_07470 PF00271 Helicase conserved C-terminal domain APY29_07480 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APY29_07485 PF00486 Transcriptional regulatory protein, C terminal APY29_07485 PF00072 Response regulator receiver domain APY29_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_07490 PF00672 HAMP domain APY29_07490 PF00512 His Kinase A (phospho-acceptor) domain APY29_07505 PF06123 Inner membrane protein CreD APY29_07530 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY29_07535 PF01475 Ferric uptake regulator family APY29_07545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_07545 PF00529 HlyD membrane-fusion protein of T1SS APY29_07550 PF00873 AcrB/AcrD/AcrF family APY29_07555 PF02321 Outer membrane efflux protein APY29_07560 PF00440 Bacterial regulatory proteins, tetR family APY29_07560 PF16859 Tetracyclin repressor-like, C-terminal domain APY29_07565 PF00248 Aldo/keto reductase family APY29_07570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_07570 PF03466 LysR substrate binding domain APY29_07580 PF12833 Helix-turn-helix domain APY29_07580 PF06719 AraC-type transcriptional regulator N-terminus APY29_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_07590 PF03466 LysR substrate binding domain APY29_07595 PF07690 Major Facilitator Superfamily APY29_07610 PF01483 Proprotein convertase P-domain APY29_07610 PF00082 Subtilase family APY29_07620 PF00082 Subtilase family APY29_07620 PF01483 Proprotein convertase P-domain APY29_07630 PF00593 TonB dependent receptor APY29_07630 PF07715 TonB-dependent Receptor Plug Domain APY29_07645 PF08240 Alcohol dehydrogenase GroES-like domain APY29_07645 PF00107 Zinc-binding dehydrogenase APY29_07650 PF00654 Voltage gated chloride channel APY29_07660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APY29_07660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APY29_07710 PF03880 DbpA RNA binding domain APY29_07710 PF00271 Helicase conserved C-terminal domain APY29_07710 PF00270 DEAD/DEAH box helicase APY29_07715 PF08448 PAS fold APY29_07715 PF00563 EAL domain APY29_07715 PF00990 Diguanylate cyclase, GGDEF domain APY29_07720 PF01479 S4 domain APY29_07720 PF00849 RNA pseudouridylate synthase APY29_07725 PF00072 Response regulator receiver domain APY29_07725 PF00990 Diguanylate cyclase, GGDEF domain APY29_07745 PF03737 Aldolase/RraA APY29_07750 PF00144 Beta-lactamase APY29_07755 PF00999 Sodium/hydrogen exchanger family APY29_07765 PF00486 Transcriptional regulatory protein, C terminal APY29_07765 PF00072 Response regulator receiver domain APY29_07770 PF02321 Outer membrane efflux protein APY29_07785 PF00873 AcrB/AcrD/AcrF family APY29_07795 PF00005 ABC transporter APY29_07795 PF00664 ABC transporter transmembrane region APY29_07835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APY29_07840 PF04070 Domain of unknown function (DUF378) APY29_07880 PF00085 Thioredoxin APY29_07890 PF00133 tRNA synthetases class I (I, L, M and V) APY29_07890 PF08264 Anticodon-binding domain of tRNA APY29_07890 PF13603 Leucyl-tRNA synthetase, Domain 2 APY29_07905 PF01467 Cytidylyltransferase-like APY29_07920 PF02590 Predicted SPOUT methyltransferase APY29_07935 PF04402 Protein of unknown function (DUF541) APY29_07940 PF02545 Maf-like protein APY29_07945 PF00575 S1 RNA binding domain APY29_07945 PF10150 Ribonuclease E/G family APY29_07950 PF13502 AsmA-like C-terminal region APY29_07950 PF13116 Protein of unknown function APY29_07960 PF01523 Putative modulator of DNA gyrase APY29_07965 PF04751 Protein of unknown function (DUF615) APY29_07970 PF01523 Putative modulator of DNA gyrase APY29_07980 PF14521 Lysine-specific metallo-endopeptidase APY29_07985 PF13276 HTH-like domain APY29_07985 PF13333 Integrase core domain APY29_07985 PF00665 Integrase core domain APY29_07990 PF01527 Transposase APY29_07995 PF00348 Polyprenyl synthetase APY29_08000 PF02609 Exonuclease VII small subunit APY29_08005 PF11734 TilS substrate C-terminal domain APY29_08005 PF01171 PP-loop family APY29_08005 PF09179 TilS substrate binding domain APY29_08015 PF00245 Alkaline phosphatase APY29_08020 PF00375 Sodium:dicarboxylate symporter family APY29_08035 PF00877 NlpC/P60 family APY29_08040 PF00877 NlpC/P60 family APY29_08045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_08050 PF04235 Protein of unknown function (DUF418) APY29_08055 PF01266 FAD dependent oxidoreductase APY29_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_08060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY29_08065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APY29_08080 PF01431 Peptidase family M13 APY29_08080 PF05649 Peptidase family M13 APY29_08085 PF05649 Peptidase family M13 APY29_08085 PF01431 Peptidase family M13 APY29_08100 PF00593 TonB dependent receptor APY29_08100 PF07715 TonB-dependent Receptor Plug Domain APY29_08105 PF10609 NUBPL iron-transfer P-loop NTPase APY29_08110 PF00692 dUTPase APY29_08130 PF01738 Dienelactone hydrolase family APY29_08140 PF13276 HTH-like domain APY29_08140 PF13333 Integrase core domain APY29_08140 PF00665 Integrase core domain APY29_08155 PF00082 Subtilase family APY29_08160 PF06480 FtsH Extracellular APY29_08160 PF01434 Peptidase family M41 APY29_08160 PF17862 AAA+ lid domain APY29_08160 PF00004 ATPase family associated with various cellular activities (AAA) APY29_08170 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APY29_08180 PF00919 Uncharacterized protein family UPF0004 APY29_08180 PF04055 Radical SAM superfamily APY29_08180 PF18693 TRAM domain APY29_08185 PF03449 Transcription elongation factor, N-terminal APY29_08185 PF01272 Transcription elongation factor, GreA/GreB, C-term APY29_08200 PF00293 NUDIX domain APY29_08215 PF01527 Transposase APY29_08220 PF13333 Integrase core domain APY29_08220 PF13276 HTH-like domain APY29_08220 PF00665 Integrase core domain APY29_08225 PF02666 Phosphatidylserine decarboxylase APY29_08230 PF02630 SCO1/SenC APY29_08235 PF05175 Methyltransferase small domain APY29_08240 PF01264 Chorismate synthase APY29_08245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APY29_08245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APY29_08250 PF02774 Semialdehyde dehydrogenase, dimerisation domain APY29_08250 PF01118 Semialdehyde dehydrogenase, NAD binding domain APY29_08270 PF01416 tRNA pseudouridine synthase APY29_08275 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APY29_08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_08280 PF03466 LysR substrate binding domain APY29_08285 PF00291 Pyridoxal-phosphate dependent enzyme APY29_08295 PF00290 Tryptophan synthase alpha chain APY29_08300 PF01039 Carboxyl transferase domain APY29_08300 PF17848 Acetyl-coA carboxylase zinc finger domain APY29_08305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY29_08305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY29_08305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY29_08305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY29_08325 PF03707 Bacterial signalling protein N terminal repeat APY29_08325 PF00563 EAL domain APY29_08325 PF00990 Diguanylate cyclase, GGDEF domain APY29_08340 PF00106 short chain dehydrogenase APY29_08345 PF00121 Triosephosphate isomerase APY29_08360 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APY29_08365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APY29_08370 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APY29_08375 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APY29_08385 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APY29_08385 PF10531 SLBB domain APY29_08385 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APY29_08390 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APY29_08390 PF00384 Molybdopterin oxidoreductase APY29_08390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APY29_08395 PF00146 NADH dehydrogenase APY29_08400 PF12838 4Fe-4S dicluster domain APY29_08405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APY29_08410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APY29_08415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY29_08415 PF00361 Proton-conducting membrane transporter APY29_08420 PF00361 Proton-conducting membrane transporter APY29_08420 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APY29_08425 PF00361 Proton-conducting membrane transporter APY29_08435 PF02576 RimP N-terminal domain APY29_08435 PF17384 RimP C-terminal SH3 domain APY29_08440 PF13184 NusA-like KH domain APY29_08440 PF00575 S1 RNA binding domain APY29_08440 PF08529 NusA N-terminal domain APY29_08445 PF08364 Bacterial translation initiation factor IF-2 associated region APY29_08445 PF00009 Elongation factor Tu GTP binding domain APY29_08445 PF11987 Translation-initiation factor 2 APY29_08445 PF04760 Translation initiation factor IF-2, N-terminal region APY29_08450 PF02033 Ribosome-binding factor A APY29_08455 PF09157 Pseudouridine synthase II TruB, C-terminal APY29_08455 PF16198 tRNA pseudouridylate synthase B C-terminal domain APY29_08455 PF01509 TruB family pseudouridylate synthase (N terminal domain) APY29_08460 PF00312 Ribosomal protein S15 APY29_08465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APY29_08465 PF00575 S1 RNA binding domain APY29_08465 PF03725 3' exoribonuclease family, domain 2 APY29_08465 PF01138 3' exoribonuclease family, domain 1 APY29_08465 PF00013 KH domain APY29_08475 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APY29_08475 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APY29_08485 PF00731 AIR carboxylase APY29_08490 PF02222 ATP-grasp domain APY29_08490 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APY29_08495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APY29_08495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APY29_08500 PF00462 Glutaredoxin APY29_08510 PF01914 MarC family integral membrane protein APY29_08515 PF00593 TonB dependent receptor APY29_08520 PF11892 Domain of unknown function (DUF3412) APY29_08520 PF03641 Possible lysine decarboxylase APY29_08520 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases APY29_08540 PF05567 Neisseria PilC beta-propeller domain APY29_08560 PF04851 Type III restriction enzyme, res subunit APY29_08560 PF17757 UvrB interaction domain APY29_08560 PF12344 Ultra-violet resistance protein B APY29_08560 PF00271 Helicase conserved C-terminal domain APY29_08560 PF02151 UvrB/uvrC motif APY29_08575 PF02534 Type IV secretory system Conjugative DNA transfer APY29_08595 PF03743 Bacterial conjugation TrbI-like protein APY29_08600 PF00437 Type II/IV secretion system protein APY29_08605 PF01464 Transglycosylase SLT domain APY29_08620 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APY29_08675 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation APY29_08675 PF14508 Glycosyl-hydrolase 97 N-terminal APY29_08675 PF10566 Glycoside hydrolase 97 APY29_08685 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APY29_08690 PF00128 Alpha amylase, catalytic domain APY29_08690 PF00686 Starch binding domain APY29_08695 PF00356 Bacterial regulatory proteins, lacI family APY29_08700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY29_08700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APY29_08700 PF02824 TGS domain APY29_08700 PF03129 Anticodon binding domain APY29_08705 PF00707 Translation initiation factor IF-3, C-terminal domain APY29_08705 PF05198 Translation initiation factor IF-3, N-terminal domain APY29_08710 PF01632 Ribosomal protein L35 APY29_08715 PF00453 Ribosomal protein L20 APY29_08720 PF01409 tRNA synthetases class II core domain (F) APY29_08720 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APY29_08725 PF03484 tRNA synthetase B5 domain APY29_08725 PF03147 Ferredoxin-fold anticodon binding domain APY29_08725 PF01588 Putative tRNA binding domain APY29_08725 PF03483 B3/4 domain APY29_08725 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APY29_08730 PF00216 Bacterial DNA-binding protein APY29_08735 PF13411 MerR HTH family regulatory protein APY29_08755 PF02397 Bacterial sugar transferase APY29_08775 PF13439 Glycosyltransferase Family 4 APY29_08775 PF00534 Glycosyl transferases group 1 APY29_08785 PF14667 Polysaccharide biosynthesis C-terminal domain APY29_08800 PF03808 Glycosyl transferase WecB/TagA/CpsF family APY29_08815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_08815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_08820 PF00753 Metallo-beta-lactamase superfamily APY29_08820 PF16123 Hydroxyacylglutathione hydrolase C-terminus APY29_08825 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family APY29_08845 PF02780 Transketolase, C-terminal domain APY29_08845 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APY29_08845 PF02779 Transketolase, pyrimidine binding domain APY29_08855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_08855 PF12806 Acetyl-CoA dehydrogenase C-terminal like APY29_08855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_08855 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_08865 PF08212 Lipocalin-like domain APY29_08895 PF13426 PAS domain APY29_08895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_08895 PF00072 Response regulator receiver domain APY29_08900 PF04362 Bacterial Fe(2+) trafficking APY29_08905 PF14815 NUDIX domain APY29_08905 PF10576 Iron-sulfur binding domain of endonuclease III APY29_08905 PF00730 HhH-GPD superfamily base excision DNA repair protein APY29_08905 PF00633 Helix-hairpin-helix motif APY29_08910 PF00448 SRP54-type protein, GTPase domain APY29_08910 PF02881 SRP54-type protein, helical bundle domain APY29_08920 PF05544 Proline racemase APY29_08925 PF01266 FAD dependent oxidoreductase APY29_08935 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_08935 PF04324 BFD-like [2Fe-2S] binding domain APY29_08940 PF00701 Dihydrodipicolinate synthetase family APY29_08945 PF00171 Aldehyde dehydrogenase family APY29_08950 PF01321 Creatinase/Prolidase N-terminal domain APY29_08950 PF00557 Metallopeptidase family M24 APY29_08965 PF13520 Amino acid permease APY29_08990 PF09286 Pro-kumamolisin, activation domain APY29_08990 PF00082 Subtilase family APY29_09000 PF00593 TonB dependent receptor APY29_09000 PF07715 TonB-dependent Receptor Plug Domain APY29_09005 PF07532 Bacterial Ig-like domain (group 4) APY29_09010 PF04616 Glycosyl hydrolases family 43 APY29_09020 PF07715 TonB-dependent Receptor Plug Domain APY29_09020 PF00593 TonB dependent receptor APY29_09055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_09055 PF00183 Hsp90 protein APY29_09065 PF01467 Cytidylyltransferase-like APY29_09075 PF00037 4Fe-4S binding domain APY29_09090 PF00759 Glycosyl hydrolase family 9 APY29_09090 PF02927 Cellulase N-terminal ig-like domain APY29_09120 PF13333 Integrase core domain APY29_09120 PF00665 Integrase core domain APY29_09120 PF13276 HTH-like domain APY29_09145 PF02547 Queuosine biosynthesis protein APY29_09150 PF01702 Queuine tRNA-ribosyltransferase APY29_09155 PF02699 Preprotein translocase subunit APY29_09160 PF07549 SecD/SecF GG Motif APY29_09160 PF13721 SecD export protein N-terminal TM region APY29_09160 PF02355 Protein export membrane protein APY29_09165 PF07549 SecD/SecF GG Motif APY29_09165 PF02355 Protein export membrane protein APY29_09200 PF00665 Integrase core domain APY29_09200 PF13276 HTH-like domain APY29_09200 PF13333 Integrase core domain APY29_09220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APY29_09225 PF00294 pfkB family carbohydrate kinase APY29_09230 PF00391 PEP-utilising enzyme, mobile domain APY29_09230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APY29_09230 PF02896 PEP-utilising enzyme, TIM barrel domain APY29_09230 PF05524 PEP-utilising enzyme, N-terminal APY29_09230 PF00381 PTS HPr component phosphorylation site APY29_09235 PF00356 Bacterial regulatory proteins, lacI family APY29_09240 PF00873 AcrB/AcrD/AcrF family APY29_09245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_09245 PF00529 HlyD membrane-fusion protein of T1SS APY29_09255 PF05088 Bacterial NAD-glutamate dehydrogenase APY29_09260 PF07690 Major Facilitator Superfamily APY29_09265 PF00072 Response regulator receiver domain APY29_09270 PF00672 HAMP domain APY29_09270 PF01627 Hpt domain APY29_09270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_09270 PF00512 His Kinase A (phospho-acceptor) domain APY29_09270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY29_09270 PF00072 Response regulator receiver domain APY29_09275 PF04286 Protein of unknown function (DUF445) APY29_09285 PF00202 Aminotransferase class-III APY29_09295 PF07690 Major Facilitator Superfamily APY29_09300 PF02634 FdhD/NarQ family APY29_09305 PF00384 Molybdopterin oxidoreductase APY29_09315 PF00083 Sugar (and other) transporter APY29_09315 PF07690 Major Facilitator Superfamily APY29_09320 PF01814 Hemerythrin HHE cation binding domain APY29_09325 PF00072 Response regulator receiver domain APY29_09325 PF00990 Diguanylate cyclase, GGDEF domain APY29_09330 PF01266 FAD dependent oxidoreductase APY29_09335 PF00120 Glutamine synthetase, catalytic domain APY29_09340 PF07722 Peptidase C26 APY29_09345 PF00120 Glutamine synthetase, catalytic domain APY29_09350 PF00202 Aminotransferase class-III APY29_09355 PF13416 Bacterial extracellular solute-binding protein APY29_09360 PF13533 Biotin-lipoyl like APY29_09365 PF07690 Major Facilitator Superfamily APY29_09370 PF02321 Outer membrane efflux protein APY29_09375 PF08402 TOBE domain APY29_09375 PF00005 ABC transporter APY29_09380 PF00528 Binding-protein-dependent transport system inner membrane component APY29_09385 PF00528 Binding-protein-dependent transport system inner membrane component APY29_09395 PF00171 Aldehyde dehydrogenase family APY29_09410 PF03471 Transporter associated domain APY29_09410 PF00571 CBS domain APY29_09420 PF02130 Uncharacterized protein family UPF0054 APY29_09430 PF02562 PhoH-like protein APY29_09435 PF04055 Radical SAM superfamily APY29_09435 PF00919 Uncharacterized protein family UPF0004 APY29_09435 PF01938 TRAM domain APY29_09450 PF01464 Transglycosylase SLT domain APY29_09455 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APY29_09455 PF00355 Rieske [2Fe-2S] domain APY29_09460 PF00033 Cytochrome b/b6/petB APY29_09460 PF00032 Cytochrome b(C-terminal)/b6/petD APY29_09465 PF02167 Cytochrome C1 family APY29_09470 PF02798 Glutathione S-transferase, N-terminal domain APY29_09470 PF00043 Glutathione S-transferase, C-terminal domain APY29_09475 PF04386 Stringent starvation protein B APY29_09490 PF00270 DEAD/DEAH box helicase APY29_09490 PF08494 DEAD/H associated APY29_09490 PF00271 Helicase conserved C-terminal domain APY29_09495 PF02245 Methylpurine-DNA glycosylase (MPG) APY29_09500 PF02743 Cache domain APY29_09500 PF00672 HAMP domain APY29_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_09505 PF01584 CheW-like domain APY29_09530 PF13333 Integrase core domain APY29_09530 PF00665 Integrase core domain APY29_09530 PF13276 HTH-like domain APY29_09550 PF00589 Phage integrase family APY29_09570 PF04679 ATP dependent DNA ligase C terminal region APY29_09570 PF01068 ATP dependent DNA ligase domain APY29_09570 PF13298 DNA polymerase Ligase (LigD) APY29_09575 PF00570 HRDC domain APY29_09575 PF01612 3'-5' exonuclease APY29_09580 PF03781 Sulfatase-modifying factor enzyme 1 APY29_09590 PF02601 Exonuclease VII, large subunit APY29_09590 PF13742 OB-fold nucleic acid binding domain APY29_09595 PF08331 Domain of unknown function (DUF1730) APY29_09600 PF01256 Carbohydrate kinase APY29_09600 PF03853 YjeF-related protein N-terminus APY29_09605 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APY29_09610 PF11741 AMIN domain APY29_09610 PF01520 N-acetylmuramoyl-L-alanine amidase APY29_09615 PF01119 DNA mismatch repair protein, C-terminal domain APY29_09615 PF08676 MutL C terminal dimerisation domain APY29_09630 PF05233 PHB accumulation regulatory domain APY29_09630 PF07879 PHB/PHA accumulation regulator DNA-binding domain APY29_09635 PF00106 short chain dehydrogenase APY29_09640 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY29_09645 PF01435 Peptidase family M48 APY29_09650 PF00563 EAL domain APY29_09650 PF00990 Diguanylate cyclase, GGDEF domain APY29_09650 PF00072 Response regulator receiver domain APY29_09660 PF07152 YaeQ protein APY29_09665 PF00313 'Cold-shock' DNA-binding domain APY29_09670 PF02798 Glutathione S-transferase, N-terminal domain APY29_09670 PF14497 Glutathione S-transferase, C-terminal domain APY29_09675 PF00135 Carboxylesterase family APY29_09680 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APY29_09685 PF00156 Phosphoribosyl transferase domain APY29_09690 PF00271 Helicase conserved C-terminal domain APY29_09690 PF03880 DbpA RNA binding domain APY29_09690 PF00270 DEAD/DEAH box helicase APY29_09705 PF00545 ribonuclease APY29_09710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APY29_09710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APY29_09715 PF00459 Inositol monophosphatase family APY29_09720 PF00588 SpoU rRNA Methylase family APY29_09730 PF03707 Bacterial signalling protein N terminal repeat APY29_09730 PF00990 Diguanylate cyclase, GGDEF domain APY29_09730 PF13188 PAS domain APY29_09730 PF00563 EAL domain APY29_09735 PF04055 Radical SAM superfamily APY29_09740 PF01132 Elongation factor P (EF-P) OB domain APY29_09740 PF09285 Elongation factor P, C-terminal APY29_09740 PF08207 Elongation factor P (EF-P) KOW-like domain APY29_09750 PF01979 Amidohydrolase family APY29_09760 PF13419 Haloacid dehalogenase-like hydrolase APY29_09775 PF13276 HTH-like domain APY29_09775 PF13683 Integrase core domain APY29_09805 PF00753 Metallo-beta-lactamase superfamily APY29_09815 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APY29_09820 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APY29_09835 PF08460 Bacterial SH3 domain APY29_09835 PF01551 Peptidase family M23 APY29_09840 PF01979 Amidohydrolase family APY29_09845 PF01809 Putative membrane protein insertion efficiency factor APY29_09855 PF01258 Prokaryotic dksA/traR C4-type zinc finger APY29_09865 PF02657 Fe-S metabolism associated domain APY29_09870 PF09190 DALR domain APY29_09870 PF01406 tRNA synthetases class I (C) catalytic domain APY29_09880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APY29_09880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APY29_09885 PF00764 Arginosuccinate synthase APY29_09900 PF00696 Amino acid kinase family APY29_09900 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase APY29_09910 PF01118 Semialdehyde dehydrogenase, NAD binding domain APY29_09915 PF00206 Lyase APY29_09930 PF00171 Aldehyde dehydrogenase family APY29_09935 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APY29_09935 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APY29_09950 PF02322 Cytochrome bd terminal oxidase subunit II APY29_09955 PF01654 Cytochrome bd terminal oxidase subunit I APY29_09960 PF00664 ABC transporter transmembrane region APY29_09960 PF00005 ABC transporter APY29_09965 PF00664 ABC transporter transmembrane region APY29_09965 PF00005 ABC transporter APY29_09970 PF00313 'Cold-shock' DNA-binding domain APY29_09975 PF00561 alpha/beta hydrolase fold APY29_09985 PF03918 Cytochrome C biogenesis protein APY29_09990 PF08534 Redoxin APY29_09995 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APY29_09995 PF01578 Cytochrome C assembly protein APY29_10000 PF03100 CcmE APY29_10010 PF01578 Cytochrome C assembly protein APY29_10015 PF03379 CcmB protein APY29_10020 PF00005 ABC transporter APY29_10025 PF00155 Aminotransferase class I and II APY29_10030 PF00795 Carbon-nitrogen hydrolase APY29_10045 PF00849 RNA pseudouridylate synthase APY29_10045 PF01479 S4 domain APY29_10050 PF04079 Segregation and condensation complex subunit ScpB APY29_10055 PF02616 Segregation and condensation protein ScpA APY29_10060 PF03795 YCII-related domain APY29_10070 PF00356 Bacterial regulatory proteins, lacI family APY29_10090 PF00528 Binding-protein-dependent transport system inner membrane component APY29_10095 PF00528 Binding-protein-dependent transport system inner membrane component APY29_10120 PF00795 Carbon-nitrogen hydrolase APY29_10125 PF04371 Porphyromonas-type peptidyl-arginine deiminase APY29_10135 PF00444 Ribosomal protein L36 APY29_10140 PF02224 Cytidylate kinase APY29_10145 PF00575 S1 RNA binding domain APY29_10150 PF00216 Bacterial DNA-binding protein APY29_10160 PF18073 Rubredoxin metal binding domain APY29_10165 PF00953 Glycosyl transferase family 4 APY29_10170 PF02719 Polysaccharide biosynthesis protein APY29_10175 PF00483 Nucleotidyl transferase APY29_10180 PF00999 Sodium/hydrogen exchanger family APY29_10180 PF02254 TrkA-N domain APY29_10190 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APY29_10190 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APY29_10195 PF00478 IMP dehydrogenase / GMP reductase domain APY29_10195 PF00571 CBS domain APY29_10200 PF02540 NAD synthase APY29_10200 PF00117 Glutamine amidotransferase class-I APY29_10200 PF00958 GMP synthase C terminal domain APY29_10205 PF00589 Phage integrase family APY29_10205 PF13356 Arm DNA-binding domain APY29_10245 PF08240 Alcohol dehydrogenase GroES-like domain APY29_10245 PF00107 Zinc-binding dehydrogenase APY29_10255 PF00248 Aldo/keto reductase family APY29_10275 PF00665 Integrase core domain APY29_10275 PF13276 HTH-like domain APY29_10275 PF13333 Integrase core domain APY29_10280 PF02534 Type IV secretory system Conjugative DNA transfer APY29_10290 PF00437 Type II/IV secretion system protein APY29_10305 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APY29_10320 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APY29_10330 PF03524 Conjugal transfer protein APY29_10335 PF03743 Bacterial conjugation TrbI-like protein APY29_10345 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) APY29_10350 PF03466 LysR substrate binding domain APY29_10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_10370 PF00072 Response regulator receiver domain APY29_10370 PF00196 Bacterial regulatory proteins, luxR family APY29_10385 PF00857 Isochorismatase family APY29_10395 PF00929 Exonuclease APY29_10400 PF14437 MafB19-like deaminase APY29_10405 PF01325 Iron dependent repressor, N-terminal DNA binding domain APY29_10405 PF02742 Iron dependent repressor, metal binding and dimerisation domain APY29_10410 PF01566 Natural resistance-associated macrophage protein APY29_10415 PF00561 alpha/beta hydrolase fold APY29_10430 PF05977 Transmembrane secretion effector APY29_10435 PF07969 Amidohydrolase family APY29_10440 PF05552 Conserved TM helix APY29_10440 PF00924 Mechanosensitive ion channel APY29_10445 PF02896 PEP-utilising enzyme, TIM barrel domain APY29_10445 PF00391 PEP-utilising enzyme, mobile domain APY29_10445 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APY29_10450 PF03618 Kinase/pyrophosphorylase APY29_10470 PF01066 CDP-alcohol phosphatidyltransferase APY29_10480 PF00561 alpha/beta hydrolase fold APY29_10495 PF01266 FAD dependent oxidoreductase APY29_10495 PF00355 Rieske [2Fe-2S] domain APY29_10505 PF00575 S1 RNA binding domain APY29_10505 PF16921 Tex protein YqgF-like domain APY29_10505 PF09371 Tex-like protein N-terminal domain APY29_10505 PF17674 HHH domain APY29_10510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_10510 PF00512 His Kinase A (phospho-acceptor) domain APY29_10510 PF00072 Response regulator receiver domain APY29_10510 PF09308 LuxQ, periplasmic APY29_10550 PF00034 Cytochrome c APY29_10560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_10565 PF00873 AcrB/AcrD/AcrF family APY29_10575 PF13683 Integrase core domain APY29_10575 PF13276 HTH-like domain APY29_10580 PF01527 Transposase APY29_10585 PF00873 AcrB/AcrD/AcrF family APY29_10590 PF01081 KDPG and KHG aldolase APY29_10595 PF00920 Dehydratase family APY29_10600 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APY29_10605 PF02685 Glucokinase APY29_10610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APY29_10610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APY29_10615 PF17912 MalK OB fold domain APY29_10615 PF00005 ABC transporter APY29_10625 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APY29_10630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APY29_10635 PF00890 FAD binding domain APY29_10635 PF02910 Fumarate reductase flavoprotein C-term APY29_10645 PF13085 2Fe-2S iron-sulfur cluster binding domain APY29_10650 PF03937 Flavinator of succinate dehydrogenase APY29_10660 PF02687 FtsX-like permease family APY29_10660 PF12704 MacB-like periplasmic core domain APY29_10665 PF00005 ABC transporter APY29_10675 PF00753 Metallo-beta-lactamase superfamily APY29_10675 PF03772 Competence protein APY29_10680 PF01618 MotA/TolQ/ExbB proton channel family APY29_10690 PF00664 ABC transporter transmembrane region APY29_10690 PF00005 ABC transporter APY29_10695 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APY29_10700 PF02348 Cytidylyltransferase APY29_10705 PF01451 Low molecular weight phosphotyrosine protein phosphatase APY29_10715 PF08459 UvrC Helix-hairpin-helix N-terminal APY29_10715 PF02151 UvrB/uvrC motif APY29_10715 PF01541 GIY-YIG catalytic domain APY29_10720 PF01066 CDP-alcohol phosphatidyltransferase APY29_10740 PF13356 Arm DNA-binding domain APY29_10740 PF00589 Phage integrase family APY29_10760 PF12705 PD-(D/E)XK nuclease superfamily APY29_10760 PF13361 UvrD-like helicase C-terminal domain APY29_10760 PF00580 UvrD/REP helicase N-terminal domain APY29_10765 PF11398 Protein of unknown function (DUF2813) APY29_10775 PF05598 Transposase domain (DUF772) APY29_10790 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APY29_10830 PF01527 Transposase APY29_10835 PF13333 Integrase core domain APY29_10835 PF13276 HTH-like domain APY29_10835 PF00665 Integrase core domain APY29_10895 PF07690 Major Facilitator Superfamily APY29_10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_10900 PF03466 LysR substrate binding domain APY29_11025 PF00665 Integrase core domain APY29_11025 PF13936 Helix-turn-helix domain APY29_11055 PF02021 Uncharacterised protein family UPF0102 APY29_11090 PF00145 C-5 cytosine-specific DNA methylase APY29_11095 PF01751 Toprim domain APY29_11095 PF01131 DNA topoisomerase APY29_11100 PF00436 Single-strand binding protein family APY29_11135 PF13614 AAA domain APY29_11155 PF00145 C-5 cytosine-specific DNA methylase APY29_11160 PF12137 RNA polymerase recycling family C-terminal APY29_11160 PF18339 RapA N-terminal Tudor like domain 1 APY29_11160 PF00176 SNF2 family N-terminal domain APY29_11160 PF18337 RapA N-terminal Tudor like domain APY29_11160 PF00271 Helicase conserved C-terminal domain APY29_11170 PF02796 Helix-turn-helix domain of resolvase APY29_11170 PF00665 Integrase core domain APY29_11175 PF01695 IstB-like ATP binding protein APY29_11240 PF01648 4'-phosphopantetheinyl transferase superfamily APY29_11240 PF17837 4'-phosphopantetheinyl transferase N-terminal domain APY29_11250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY29_11250 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY29_11250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY29_11260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_11275 PF00196 Bacterial regulatory proteins, luxR family APY29_11275 PF00072 Response regulator receiver domain APY29_11280 PF12111 Polyribonucleotide phosphorylase C terminal APY29_11280 PF10150 Ribonuclease E/G family APY29_11280 PF00575 S1 RNA binding domain APY29_11285 PF00849 RNA pseudouridylate synthase APY29_11285 PF01479 S4 domain APY29_11290 PF11737 Protein of unknown function (DUF3300) APY29_11295 PF02535 ZIP Zinc transporter APY29_11305 PF01329 Pterin 4 alpha carbinolamine dehydratase APY29_11310 PF01106 NifU-like domain APY29_11360 PF01527 Transposase APY29_11365 PF13276 HTH-like domain APY29_11365 PF13333 Integrase core domain APY29_11365 PF00665 Integrase core domain APY29_11380 PF17091 Inovirus G7P protein APY29_11425 PF09335 SNARE associated Golgi protein APY29_11435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY29_11440 PF07995 Glucose / Sorbosone dehydrogenase APY29_11450 PF00144 Beta-lactamase APY29_11455 PF00072 Response regulator receiver domain APY29_11455 PF04397 LytTr DNA-binding domain APY29_11460 PF06580 Histidine kinase APY29_11460 PF07694 5TMR of 5TMR-LYT APY29_11460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_11475 PF00082 Subtilase family APY29_11475 PF03797 Autotransporter beta-domain APY29_11480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_11480 PF00529 HlyD membrane-fusion protein of T1SS APY29_11485 PF00873 AcrB/AcrD/AcrF family APY29_11490 PF01527 Transposase APY29_11495 PF00665 Integrase core domain APY29_11495 PF13333 Integrase core domain APY29_11495 PF13276 HTH-like domain APY29_11505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_11505 PF00512 His Kinase A (phospho-acceptor) domain APY29_11505 PF08448 PAS fold APY29_11505 PF13426 PAS domain APY29_11505 PF00072 Response regulator receiver domain APY29_11510 PF00072 Response regulator receiver domain APY29_11510 PF00196 Bacterial regulatory proteins, luxR family APY29_11515 PF12951 Passenger-associated-transport-repeat APY29_11515 PF12951 Passenger-associated-transport-repeat APY29_11520 PF08448 PAS fold APY29_11520 PF00563 EAL domain APY29_11520 PF00990 Diguanylate cyclase, GGDEF domain APY29_11520 PF08447 PAS fold APY29_11535 PF05974 Domain of unknown function (DUF892) APY29_11555 PF10414 Sirohaem synthase dimerisation region APY29_11555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY29_11555 PF14824 Sirohaem biosynthesis protein central APY29_11565 PF12804 MobA-like NTP transferase domain APY29_11570 PF00994 Probable molybdopterin binding domain APY29_11570 PF03453 MoeA N-terminal region (domain I and II) APY29_11570 PF03454 MoeA C-terminal region (domain IV) APY29_11580 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_11590 PF03377 TAL effector repeat APY29_11595 PF13333 Integrase core domain APY29_11595 PF13276 HTH-like domain APY29_11595 PF00665 Integrase core domain APY29_11600 PF01527 Transposase APY29_11605 PF13276 HTH-like domain APY29_11605 PF13333 Integrase core domain APY29_11605 PF00665 Integrase core domain APY29_11610 PF00665 Integrase core domain APY29_11610 PF13333 Integrase core domain APY29_11610 PF13276 HTH-like domain APY29_11615 PF01527 Transposase APY29_11650 PF01695 IstB-like ATP binding protein APY29_11655 PF00665 Integrase core domain APY29_11655 PF02796 Helix-turn-helix domain of resolvase APY29_11685 PF01526 Tn3 transposase DDE domain APY29_11685 PF13700 Domain of unknown function (DUF4158) APY29_11720 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APY29_11725 PF03377 TAL effector repeat APY29_11730 PF01381 Helix-turn-helix APY29_11740 PF02796 Helix-turn-helix domain of resolvase APY29_11740 PF00239 Resolvase, N terminal domain APY29_11745 PF01555 DNA methylase APY29_11750 PF09571 XcyI restriction endonuclease APY29_11790 PF00145 C-5 cytosine-specific DNA methylase APY29_11830 PF13823 Alcohol dehydrogenase GroES-associated APY29_11830 PF00107 Zinc-binding dehydrogenase APY29_11830 PF08240 Alcohol dehydrogenase GroES-like domain APY29_11870 PF00899 ThiF family APY29_11875 PF00994 Probable molybdopterin binding domain APY29_11875 PF03454 MoeA C-terminal region (domain IV) APY29_11875 PF03453 MoeA N-terminal region (domain I and II) APY29_11880 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APY29_11880 PF01926 50S ribosome-binding GTPase APY29_11885 PF13360 PQQ-like domain APY29_11885 PF01011 PQQ enzyme repeat APY29_11895 PF13464 Domain of unknown function (DUF4115) APY29_11905 PF04055 Radical SAM superfamily APY29_11910 PF00334 Nucleoside diphosphate kinase APY29_11920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY29_11920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY29_11920 PF00378 Enoyl-CoA hydratase/isomerase APY29_11925 PF02803 Thiolase, C-terminal domain APY29_11925 PF00108 Thiolase, N-terminal domain APY29_11930 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APY29_11935 PF00004 ATPase family associated with various cellular activities (AAA) APY29_11935 PF16193 AAA C-terminal domain APY29_11935 PF12002 MgsA AAA+ ATPase C terminal APY29_11945 PF03548 Outer membrane lipoprotein carrier protein LolA APY29_11955 PF01580 FtsK/SpoIIIE family APY29_11955 PF17854 FtsK alpha domain APY29_11955 PF09397 Ftsk gamma domain APY29_11955 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APY29_11960 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_11970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APY29_11975 PF01176 Translation initiation factor 1A / IF-1 APY29_11980 PF17871 AAA lid domain APY29_11980 PF07724 AAA domain (Cdc48 subfamily) APY29_11980 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_11980 PF00004 ATPase family associated with various cellular activities (AAA) APY29_11980 PF02861 Clp amino terminal domain, pathogenicity island component APY29_11985 PF02617 ATP-dependent Clp protease adaptor protein ClpS APY29_11990 PF00293 NUDIX domain APY29_12000 PF04356 Protein of unknown function (DUF489) APY29_12005 PF12729 Four helix bundle sensory module for signal transduction APY29_12005 PF00672 HAMP domain APY29_12005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12015 PF00563 EAL domain APY29_12015 PF03707 Bacterial signalling protein N terminal repeat APY29_12015 PF00990 Diguanylate cyclase, GGDEF domain APY29_12020 PF07730 Histidine kinase APY29_12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12025 PF00563 EAL domain APY29_12025 PF00990 Diguanylate cyclase, GGDEF domain APY29_12025 PF03707 Bacterial signalling protein N terminal repeat APY29_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12030 PF00989 PAS fold APY29_12030 PF13188 PAS domain APY29_12030 PF00512 His Kinase A (phospho-acceptor) domain APY29_12030 PF13426 PAS domain APY29_12050 PF00072 Response regulator receiver domain APY29_12050 PF01584 CheW-like domain APY29_12060 PF00460 Flagella basal body rod protein APY29_12060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12065 PF03963 Flagellar hook capping protein - N-terminal region APY29_12070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12070 PF00460 Flagella basal body rod protein APY29_12070 PF07559 Flagellar basal body protein FlaE APY29_12075 PF00460 Flagella basal body rod protein APY29_12075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12080 PF00460 Flagella basal body rod protein APY29_12085 PF02107 Flagellar L-ring protein APY29_12090 PF02119 Flagellar P-ring protein APY29_12095 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APY29_12095 PF10135 Rod binding protein APY29_12100 PF07196 Flagellin hook IN motif APY29_12100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12105 PF00700 Bacterial flagellin C-terminal helical region APY29_12105 PF00669 Bacterial flagellin N-terminal helical region APY29_12110 PF00700 Bacterial flagellin C-terminal helical region APY29_12110 PF00669 Bacterial flagellin N-terminal helical region APY29_12115 PF07195 Flagellar hook-associated protein 2 C-terminus APY29_12115 PF02465 Flagellar hook-associated protein 2 N-terminus APY29_12115 PF07196 Flagellin hook IN motif APY29_12120 PF02561 Flagellar protein FliS APY29_12135 PF00072 Response regulator receiver domain APY29_12135 PF00196 Bacterial regulatory proteins, luxR family APY29_12140 PF04963 Sigma-54 factor, core binding domain APY29_12140 PF00309 Sigma-54 factor, Activator interacting domain (AID) APY29_12140 PF04552 Sigma-54, DNA binding domain APY29_12145 PF01339 CheB methylesterase APY29_12145 PF00072 Response regulator receiver domain APY29_12150 PF02954 Bacterial regulatory protein, Fis family APY29_12150 PF00072 Response regulator receiver domain APY29_12150 PF00158 Sigma-54 interaction domain APY29_12155 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APY29_12165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_12165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_12215 PF13683 Integrase core domain APY29_12215 PF13276 HTH-like domain APY29_12220 PF00534 Glycosyl transferases group 1 APY29_12220 PF00535 Glycosyl transferase family 2 APY29_12225 PF02049 Flagellar hook-basal body complex protein FliE APY29_12230 PF08345 Flagellar M-ring protein C-terminal APY29_12230 PF01514 Secretory protein of YscJ/FliF family APY29_12235 PF14842 FliG N-terminal domain APY29_12235 PF14841 FliG middle domain APY29_12235 PF01706 FliG C-terminal domain APY29_12245 PF18269 T3SS EscN ATPase C-terminal domain APY29_12245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_12265 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APY29_12265 PF02154 Flagellar motor switch protein FliM APY29_12270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APY29_12275 PF04347 Flagellar biosynthesis protein, FliO APY29_12280 PF00813 FliP family APY29_12285 PF01313 Bacterial export proteins, family 3 APY29_12290 PF01311 Bacterial export proteins, family 1 APY29_12295 PF00563 EAL domain APY29_12295 PF00990 Diguanylate cyclase, GGDEF domain APY29_12295 PF03707 Bacterial signalling protein N terminal repeat APY29_12295 PF13188 PAS domain APY29_12305 PF03707 Bacterial signalling protein N terminal repeat APY29_12305 PF00990 Diguanylate cyclase, GGDEF domain APY29_12305 PF13188 PAS domain APY29_12305 PF00563 EAL domain APY29_12310 PF00990 Diguanylate cyclase, GGDEF domain APY29_12310 PF00563 EAL domain APY29_12310 PF03707 Bacterial signalling protein N terminal repeat APY29_12315 PF01312 FlhB HrpN YscU SpaS Family APY29_12320 PF00771 FHIPEP family APY29_12325 PF00448 SRP54-type protein, GTPase domain APY29_12330 PF10609 NUBPL iron-transfer P-loop NTPase APY29_12335 PF04542 Sigma-70 region 2 APY29_12335 PF04539 Sigma-70 region 3 APY29_12335 PF04545 Sigma-70, region 4 APY29_12340 PF00072 Response regulator receiver domain APY29_12345 PF04344 Chemotaxis phosphatase, CheZ APY29_12350 PF07194 P2 response regulator binding domain APY29_12350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12350 PF02895 Signal transducing histidine kinase, homodimeric domain APY29_12350 PF01584 CheW-like domain APY29_12350 PF01627 Hpt domain APY29_12365 PF13276 HTH-like domain APY29_12365 PF13333 Integrase core domain APY29_12365 PF00665 Integrase core domain APY29_12370 PF01527 Transposase APY29_12375 PF13683 Integrase core domain APY29_12375 PF13276 HTH-like domain APY29_12405 PF01527 Transposase APY29_12410 PF13683 Integrase core domain APY29_12410 PF13276 HTH-like domain APY29_12425 PF01618 MotA/TolQ/ExbB proton channel family APY29_12430 PF13677 Membrane MotB of proton-channel complex MotA/MotB APY29_12430 PF00691 OmpA family APY29_12435 PF13614 AAA domain APY29_12440 PF01584 CheW-like domain APY29_12450 PF00072 Response regulator receiver domain APY29_12455 PF01627 Hpt domain APY29_12455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12455 PF02895 Signal transducing histidine kinase, homodimeric domain APY29_12455 PF09078 CheY binding APY29_12455 PF01584 CheW-like domain APY29_12460 PF02203 Tar ligand binding domain homologue APY29_12460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12460 PF00672 HAMP domain APY29_12470 PF00672 HAMP domain APY29_12470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12470 PF00672 HAMP domain APY29_12470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12470 PF17200 Single Cache domain 2 APY29_12470 PF17200 Single Cache domain 2 APY29_12475 PF00672 HAMP domain APY29_12475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12475 PF02203 Tar ligand binding domain homologue APY29_12485 PF02203 Tar ligand binding domain homologue APY29_12485 PF00672 HAMP domain APY29_12485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12490 PF00672 HAMP domain APY29_12490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12495 PF00672 HAMP domain APY29_12495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12495 PF02203 Tar ligand binding domain homologue APY29_12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12510 PF00672 HAMP domain APY29_12510 PF02203 Tar ligand binding domain homologue APY29_12515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12515 PF00672 HAMP domain APY29_12515 PF02203 Tar ligand binding domain homologue APY29_12520 PF02203 Tar ligand binding domain homologue APY29_12520 PF00672 HAMP domain APY29_12520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12525 PF02203 Tar ligand binding domain homologue APY29_12525 PF00672 HAMP domain APY29_12525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12530 PF07317 Flagellar regulator YcgR APY29_12530 PF07238 PilZ domain APY29_12535 PF01584 CheW-like domain APY29_12545 PF02203 Tar ligand binding domain homologue APY29_12545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12545 PF00672 HAMP domain APY29_12550 PF03705 CheR methyltransferase, all-alpha domain APY29_12550 PF01739 CheR methyltransferase, SAM binding domain APY29_12555 PF03975 CheD chemotactic sensory transduction APY29_12560 PF00072 Response regulator receiver domain APY29_12560 PF01339 CheB methylesterase APY29_12565 PF00990 Diguanylate cyclase, GGDEF domain APY29_12565 PF03707 Bacterial signalling protein N terminal repeat APY29_12565 PF00563 EAL domain APY29_12575 PF00330 Aconitase family (aconitate hydratase) APY29_12575 PF06434 Aconitate hydratase 2 N-terminus APY29_12575 PF11791 Aconitate B N-terminal domain APY29_12590 PF00330 Aconitase family (aconitate hydratase) APY29_12590 PF00694 Aconitase C-terminal domain APY29_12600 PF00501 AMP-binding enzyme APY29_12600 PF13193 AMP-binding enzyme C-terminal domain APY29_12605 PF00378 Enoyl-CoA hydratase/isomerase APY29_12610 PF01627 Hpt domain APY29_12610 PF00512 His Kinase A (phospho-acceptor) domain APY29_12610 PF00072 Response regulator receiver domain APY29_12610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12615 PF00072 Response regulator receiver domain APY29_12620 PF00152 tRNA synthetases class II (D, K and N) APY29_12620 PF01336 OB-fold nucleic acid binding domain APY29_12625 PF03462 PCRF domain APY29_12625 PF00472 RF-1 domain APY29_12630 PF04397 LytTr DNA-binding domain APY29_12630 PF00072 Response regulator receiver domain APY29_12635 PF13276 HTH-like domain APY29_12635 PF13683 Integrase core domain APY29_12640 PF01527 Transposase APY29_12675 PF02272 DHHA1 domain APY29_12675 PF01368 DHH family APY29_12675 PF17768 RecJ OB domain APY29_12685 PF03449 Transcription elongation factor, N-terminal APY29_12685 PF01272 Transcription elongation factor, GreA/GreB, C-term APY29_12690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_12690 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APY29_12690 PF02142 MGS-like domain APY29_12700 PF00117 Glutamine amidotransferase class-I APY29_12700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APY29_12705 PF05173 Dihydrodipicolinate reductase, C-terminus APY29_12705 PF01113 Dihydrodipicolinate reductase, N-terminus APY29_12710 PF03475 3-alpha domain APY29_12710 PF03473 MOSC domain APY29_12715 PF00155 Aminotransferase class I and II APY29_12730 PF07664 Ferrous iron transport protein B C terminus APY29_12730 PF07670 Nucleoside recognition APY29_12730 PF02421 Ferrous iron transport protein B APY29_12740 PF00378 Enoyl-CoA hydratase/isomerase APY29_12750 PF00682 HMGL-like APY29_12755 PF00106 short chain dehydrogenase APY29_12760 PF09285 Elongation factor P, C-terminal APY29_12760 PF08207 Elongation factor P (EF-P) KOW-like domain APY29_12760 PF01132 Elongation factor P (EF-P) OB domain APY29_12780 PF02913 FAD linked oxidases, C-terminal domain APY29_12780 PF01565 FAD binding domain APY29_12785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APY29_12785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APY29_12785 PF01842 ACT domain APY29_12795 PF13520 Amino acid permease APY29_12800 PF13520 Amino acid permease APY29_12805 PF00596 Class II Aldolase and Adducin N-terminal domain APY29_12810 PF03079 ARD/ARD' family APY29_12830 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APY29_12830 PF01502 Phosphoribosyl-AMP cyclohydrolase APY29_12835 PF00977 Histidine biosynthesis protein APY29_12840 PF00977 Histidine biosynthesis protein APY29_12845 PF00117 Glutamine amidotransferase class-I APY29_12850 PF00475 Imidazoleglycerol-phosphate dehydratase APY29_12855 PF00155 Aminotransferase class I and II APY29_12860 PF00815 Histidinol dehydrogenase APY29_12865 PF01634 ATP phosphoribosyltransferase APY29_12865 PF08029 HisG, C-terminal domain APY29_12875 PF03129 Anticodon binding domain APY29_12875 PF13393 Histidyl-tRNA synthetase APY29_12880 PF13545 Crp-like helix-turn-helix domain APY29_12880 PF00027 Cyclic nucleotide-binding domain APY29_12890 PF14821 Threonine synthase N terminus APY29_12890 PF00291 Pyridoxal-phosphate dependent enzyme APY29_12900 PF00288 GHMP kinases N terminal domain APY29_12900 PF08544 GHMP kinases C terminal APY29_12905 PF00742 Homoserine dehydrogenase APY29_12905 PF13840 ACT domain APY29_12905 PF01842 ACT domain APY29_12905 PF00696 Amino acid kinase family APY29_12905 PF03447 Homoserine dehydrogenase, NAD binding domain APY29_12925 PF08479 POTRA domain, ShlB-type APY29_12925 PF17287 POTRA domain APY29_12925 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APY29_12935 PF01522 Polysaccharide deacetylase APY29_12935 PF14883 Hypothetical glycosyl hydrolase family 13 APY29_12940 PF00535 Glycosyl transferase family 2 APY29_12955 PF00171 Aldehyde dehydrogenase family APY29_12970 PF01180 Dihydroorotate dehydrogenase APY29_12975 PF01565 FAD binding domain APY29_12975 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APY29_12980 PF00892 EamA-like transporter family APY29_12985 PF01177 Asp/Glu/Hydantoin racemase APY29_12990 PF07690 Major Facilitator Superfamily APY29_12995 PF01569 PAP2 superfamily APY29_13000 PF04551 GcpE protein APY29_13010 PF00072 Response regulator receiver domain APY29_13015 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_13015 PF02013 Cellulose or protein binding domain APY29_13020 PF00990 Diguanylate cyclase, GGDEF domain APY29_13020 PF00563 EAL domain APY29_13020 PF01590 GAF domain APY29_13020 PF00360 Phytochrome region APY29_13025 PF00474 Sodium:solute symporter family APY29_13030 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_13030 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_13030 PF14310 Fibronectin type III-like domain APY29_13050 PF00342 Phosphoglucose isomerase APY29_13055 PF02261 Aspartate decarboxylase APY29_13060 PF02569 Pantoate-beta-alanine ligase APY29_13065 PF02548 Ketopantoate hydroxymethyltransferase APY29_13070 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APY29_13075 PF12627 Probable RNA and SrmB- binding site of polymerase A APY29_13075 PF01743 Poly A polymerase head domain APY29_13075 PF12626 Polymerase A arginine-rich C-terminus APY29_13085 PF02649 Type I GTP cyclohydrolase folE2 APY29_13090 PF01520 N-acetylmuramoyl-L-alanine amidase APY29_13105 PF00083 Sugar (and other) transporter APY29_13115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY29_13115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY29_13125 PF01055 Glycosyl hydrolases family 31 APY29_13125 PF16338 Domain of unknown function (DUF4968) APY29_13125 PF17137 Domain of unknown function (DUF5110) APY29_13140 PF03442 Carbohydrate binding domain X2 APY29_13140 PF00942 Cellulose binding domain APY29_13155 PF03466 LysR substrate binding domain APY29_13155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_13170 PF01081 KDPG and KHG aldolase APY29_13175 PF13378 Enolase C-terminal domain-like APY29_13175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_13180 PF08450 SMP-30/Gluconolactonase/LRE-like region APY29_13185 PF05035 2-keto-3-deoxy-galactonokinase APY29_13190 PF11953 Domain of unknown function (DUF3470) APY29_13190 PF00037 4Fe-4S binding domain APY29_13200 PF00701 Dihydrodipicolinate synthetase family APY29_13215 PF00578 AhpC/TSA family APY29_13220 PF13638 PIN domain APY29_13220 PF02562 PhoH-like protein APY29_13235 PF08543 Phosphomethylpyrimidine kinase APY29_13260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_13260 PF03466 LysR substrate binding domain APY29_13270 PF02678 Pirin APY29_13270 PF17954 Quercetinase C-terminal cupin domain APY29_13275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_13275 PF13426 PAS domain APY29_13275 PF08447 PAS fold APY29_13285 PF02599 Global regulator protein family APY29_13290 PF01411 tRNA synthetases class II (A) APY29_13290 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APY29_13290 PF02272 DHHA1 domain APY29_13295 PF02631 RecX family APY29_13300 PF00154 recA bacterial DNA recombination protein APY29_13305 PF00717 Peptidase S24-like APY29_13305 PF01726 LexA DNA binding domain APY29_13310 PF03109 ABC1 family APY29_13315 PF02464 Competence-damaged protein APY29_13320 PF16360 GTP-binding GTPase Middle Region APY29_13320 PF01926 50S ribosome-binding GTPase APY29_13320 PF13167 GTP-binding GTPase N-terminal APY29_13325 PF17209 Hfq protein APY29_13335 PF00809 Pterin binding enzyme APY29_13340 PF00004 ATPase family associated with various cellular activities (AAA) APY29_13340 PF17862 AAA+ lid domain APY29_13340 PF06480 FtsH Extracellular APY29_13340 PF01434 Peptidase family M41 APY29_13345 PF01728 FtsJ-like methyltransferase APY29_13350 PF01985 CRS1 / YhbY (CRM) domain APY29_13355 PF04430 Protein of unknown function (DUF498/DUF598) APY29_13360 PF01551 Peptidase family M23 APY29_13360 PF01476 LysM domain APY29_13365 PF09335 SNARE associated Golgi protein APY29_13375 PF01975 Survival protein SurE APY29_13380 PF01713 Smr domain APY29_13385 PF01142 tRNA pseudouridine synthase D (TruD) APY29_13390 PF02542 YgbB family APY29_13400 PF04977 Septum formation initiator APY29_13405 PF03952 Enolase, N-terminal domain APY29_13405 PF00113 Enolase, C-terminal TIM barrel domain APY29_13415 PF00793 DAHP synthetase I family APY29_13420 PF06418 CTP synthase N-terminus APY29_13420 PF00117 Glutamine amidotransferase class-I APY29_13430 PF00204 DNA gyrase B APY29_13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_13430 PF01751 Toprim domain APY29_13430 PF00986 DNA gyrase B subunit, carboxyl terminus APY29_13445 PF01384 Phosphate transporter family APY29_13455 PF00571 CBS domain APY29_13455 PF03471 Transporter associated domain APY29_13455 PF01595 Cyclin M transmembrane N-terminal domain APY29_13470 PF00296 Luciferase-like monooxygenase APY29_13475 PF07690 Major Facilitator Superfamily APY29_13480 PF00005 ABC transporter APY29_13480 PF00664 ABC transporter transmembrane region APY29_13485 PF00005 ABC transporter APY29_13520 PF08241 Methyltransferase domain APY29_13535 PF00535 Glycosyl transferase family 2 APY29_13540 PF01943 Polysaccharide biosynthesis protein APY29_13545 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APY29_13565 PF05523 WxcM-like, C-terminal APY29_13580 PF00034 Cytochrome c APY29_13605 PF01527 Transposase APY29_13615 PF13406 Transglycosylase SLT domain APY29_13620 PF13700 Domain of unknown function (DUF4158) APY29_13620 PF01526 Tn3 transposase DDE domain APY29_13630 PF13276 HTH-like domain APY29_13630 PF00665 Integrase core domain APY29_13630 PF13333 Integrase core domain APY29_13655 PF08281 Sigma-70, region 4 APY29_13655 PF04542 Sigma-70 region 2 APY29_13665 PF00082 Subtilase family APY29_13670 PF01578 Cytochrome C assembly protein APY29_13680 PF03100 CcmE APY29_13685 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APY29_13685 PF01578 Cytochrome C assembly protein APY29_13690 PF08534 Redoxin APY29_13695 PF03918 Cytochrome C biogenesis protein APY29_13705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_13705 PF13426 PAS domain APY29_13705 PF00072 Response regulator receiver domain APY29_13715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY29_13715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_13715 PF00512 His Kinase A (phospho-acceptor) domain APY29_13715 PF01627 Hpt domain APY29_13715 PF00672 HAMP domain APY29_13715 PF00072 Response regulator receiver domain APY29_13740 PF01494 FAD binding domain APY29_13745 PF02203 Tar ligand binding domain homologue APY29_13745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_13745 PF00672 HAMP domain APY29_13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_13760 PF03466 LysR substrate binding domain APY29_13765 PF02525 Flavodoxin-like fold APY29_13770 PF02403 Seryl-tRNA synthetase N-terminal domain APY29_13770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY29_13775 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_13785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APY29_13795 PF00266 Aminotransferase class-V APY29_13800 PF00174 Oxidoreductase molybdopterin binding domain APY29_13805 PF01794 Ferric reductase like transmembrane component APY29_13830 PF07702 UTRA domain APY29_13830 PF00392 Bacterial regulatory proteins, gntR family APY29_13845 PF07969 Amidohydrolase family APY29_13850 PF00221 Aromatic amino acid lyase APY29_13860 PF01175 Urocanase Rossmann-like domain APY29_13860 PF17392 Urocanase C-terminal domain APY29_13860 PF17391 Urocanase N-terminal domain APY29_13870 PF13360 PQQ-like domain APY29_13875 PF03989 DNA gyrase C-terminal domain, beta-propeller APY29_13875 PF00521 DNA gyrase/topoisomerase IV, subunit A APY29_13880 PF01008 Initiation factor 2 subunit family APY29_13890 PF00152 tRNA synthetases class II (D, K and N) APY29_13895 PF12826 Helix-hairpin-helix motif APY29_13895 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APY29_13895 PF01653 NAD-dependent DNA ligase adenylation domain APY29_13895 PF00533 BRCA1 C Terminus (BRCT) domain APY29_13895 PF03120 NAD-dependent DNA ligase OB-fold domain APY29_13900 PF00155 Aminotransferase class I and II APY29_13915 PF04354 ZipA, C-terminal FtsZ-binding domain APY29_13920 PF02463 RecF/RecN/SMC N terminal domain APY29_13925 PF03948 Ribosomal protein L9, C-terminal domain APY29_13925 PF01281 Ribosomal protein L9, N-terminal domain APY29_13930 PF01084 Ribosomal protein S18 APY29_13935 PF01250 Ribosomal protein S6 APY29_13940 PF01521 Iron-sulphur cluster biosynthesis APY29_13945 PF01336 OB-fold nucleic acid binding domain APY29_13945 PF00152 tRNA synthetases class II (D, K and N) APY29_13965 PF04299 Putative FMN-binding domain APY29_13990 PF00196 Bacterial regulatory proteins, luxR family APY29_13990 PF00072 Response regulator receiver domain APY29_14035 PF00484 Carbonic anhydrase APY29_14040 PF06052 3-hydroxyanthranilic acid dioxygenase APY29_14050 PF00266 Aminotransferase class-V APY29_14055 PF01494 FAD binding domain APY29_14060 PF08411 Exonuclease C-terminal APY29_14060 PF00929 Exonuclease APY29_14085 PF01513 ATP-NAD kinase APY29_14090 PF01170 Putative RNA methylase family UPF0020 APY29_14090 PF10672 S-adenosylmethionine-dependent methyltransferase APY29_14090 PF02926 THUMP domain APY29_14125 PF00581 Rhodanese-like domain APY29_14130 PF00293 NUDIX domain APY29_14135 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APY29_14135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_14140 PF00378 Enoyl-CoA hydratase/isomerase APY29_14150 PF00633 Helix-hairpin-helix motif APY29_14150 PF00730 HhH-GPD superfamily base excision DNA repair protein APY29_14150 PF10576 Iron-sulfur binding domain of endonuclease III APY29_14155 PF00916 Sulfate permease family APY29_14155 PF01740 STAS domain APY29_14160 PF00484 Carbonic anhydrase APY29_14175 PF12849 PBP superfamily domain APY29_14180 PF12849 PBP superfamily domain APY29_14185 PF00528 Binding-protein-dependent transport system inner membrane component APY29_14190 PF00528 Binding-protein-dependent transport system inner membrane component APY29_14195 PF00005 ABC transporter APY29_14200 PF01895 PhoU domain APY29_14210 PF00929 Exonuclease APY29_14220 PF05598 Transposase domain (DUF772) APY29_14225 PF00588 SpoU rRNA Methylase family APY29_14225 PF08032 RNA 2'-O ribose methyltransferase substrate binding APY29_14235 PF00773 RNB domain APY29_14235 PF00575 S1 RNA binding domain APY29_14235 PF08206 Ribonuclease B OB domain APY29_14235 PF17876 Cold shock domain APY29_14235 PF08461 Ribonuclease R winged-helix domain APY29_14250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_14250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_14250 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_14255 PF01209 ubiE/COQ5 methyltransferase family APY29_14260 PF00809 Pterin binding enzyme APY29_14260 PF02574 Homocysteine S-methyltransferase APY29_14265 PF02310 B12 binding domain APY29_14265 PF02965 Vitamin B12 dependent methionine synthase, activation domain APY29_14265 PF00809 Pterin binding enzyme APY29_14265 PF02574 Homocysteine S-methyltransferase APY29_14265 PF02607 B12 binding domain APY29_14275 PF00294 pfkB family carbohydrate kinase APY29_14280 PF07690 Major Facilitator Superfamily APY29_14285 PF00356 Bacterial regulatory proteins, lacI family APY29_14300 PF04102 SlyX APY29_14305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY29_14305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY29_14305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY29_14310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APY29_14310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_14315 PF00255 Glutathione peroxidase APY29_14325 PF00392 Bacterial regulatory proteins, gntR family APY29_14330 PF00005 ABC transporter APY29_14355 PF10415 Fumarase C C-terminus APY29_14355 PF00206 Lyase APY29_14360 PF00571 CBS domain APY29_14360 PF03471 Transporter associated domain APY29_14360 PF01595 Cyclin M transmembrane N-terminal domain APY29_14380 PF08007 Cupin superfamily protein APY29_14390 PF02779 Transketolase, pyrimidine binding domain APY29_14390 PF16870 2-oxoglutarate dehydrogenase C-terminal APY29_14390 PF00676 Dehydrogenase E1 component APY29_14390 PF16078 2-oxoglutarate dehydrogenase N-terminus APY29_14395 PF00364 Biotin-requiring enzyme APY29_14395 PF02817 e3 binding domain APY29_14395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY29_14400 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_14400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY29_14405 PF03641 Possible lysine decarboxylase APY29_14410 PF01205 Uncharacterized protein family UPF0029 APY29_14415 PF00005 ABC transporter APY29_14415 PF00664 ABC transporter transmembrane region APY29_14420 PF03466 LysR substrate binding domain APY29_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_14425 PF00664 ABC transporter transmembrane region APY29_14425 PF00005 ABC transporter APY29_14425 PF03412 Peptidase C39 family APY29_14450 PF08543 Phosphomethylpyrimidine kinase APY29_14455 PF00226 DnaJ domain APY29_14455 PF01556 DnaJ C terminal domain APY29_14455 PF00684 DnaJ central domain APY29_14460 PF00012 Hsp70 protein APY29_14465 PF01025 GrpE APY29_14470 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APY29_14470 PF01628 HrcA protein C terminal domain APY29_14475 PF02463 RecF/RecN/SMC N terminal domain APY29_14480 PF01475 Ferric uptake regulator family APY29_14485 PF04355 SmpA / OmlA family APY29_14490 PF03658 RnfH family Ubiquitin APY29_14495 PF03364 Polyketide cyclase / dehydrase and lipid transport APY29_14500 PF01668 SmpB protein APY29_14505 PF00082 Subtilase family APY29_14530 PF00005 ABC transporter APY29_14530 PF03412 Peptidase C39 family APY29_14530 PF00664 ABC transporter transmembrane region APY29_14540 PF13276 HTH-like domain APY29_14540 PF00665 Integrase core domain APY29_14540 PF13333 Integrase core domain APY29_14555 PF00990 Diguanylate cyclase, GGDEF domain APY29_14565 PF08448 PAS fold APY29_14565 PF00990 Diguanylate cyclase, GGDEF domain APY29_14570 PF02321 Outer membrane efflux protein APY29_14575 PF00106 short chain dehydrogenase APY29_14580 PF00873 AcrB/AcrD/AcrF family APY29_14585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_14600 PF03466 LysR substrate binding domain APY29_14605 PF00691 OmpA family APY29_14605 PF05736 OprF membrane domain APY29_14610 PF00875 DNA photolyase APY29_14610 PF03441 FAD binding domain of DNA photolyase APY29_14615 PF03796 DnaB-like helicase C terminal domain APY29_14615 PF00772 DnaB-like helicase N terminal domain APY29_14620 PF03358 NADPH-dependent FMN reductase APY29_14625 PF13537 Glutamine amidotransferase domain APY29_14625 PF00733 Asparagine synthase APY29_14635 PF00043 Glutathione S-transferase, C-terminal domain APY29_14635 PF02798 Glutathione S-transferase, N-terminal domain APY29_14645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_14645 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_14645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_14655 PF05598 Transposase domain (DUF772) APY29_14665 PF01026 TatD related DNase APY29_14670 PF00899 ThiF family APY29_14685 PF00313 'Cold-shock' DNA-binding domain APY29_14700 PF00484 Carbonic anhydrase APY29_14715 PF05681 Fumarate hydratase (Fumerase) APY29_14715 PF05683 Fumarase C-terminus APY29_14720 PF00005 ABC transporter APY29_14725 PF00175 Oxidoreductase NAD-binding domain APY29_14725 PF00970 Oxidoreductase FAD-binding domain APY29_14730 PF00255 Glutathione peroxidase APY29_14735 PF01432 Peptidase family M3 APY29_14740 PF12802 MarR family APY29_14765 PF00854 POT family APY29_14775 PF14310 Fibronectin type III-like domain APY29_14775 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_14775 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_14785 PF07690 Major Facilitator Superfamily APY29_14790 PF00529 HlyD membrane-fusion protein of T1SS APY29_14790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_14795 PF02321 Outer membrane efflux protein APY29_14810 PF00521 DNA gyrase/topoisomerase IV, subunit A APY29_14810 PF03989 DNA gyrase C-terminal domain, beta-propeller APY29_14815 PF05724 Thiopurine S-methyltransferase (TPMT) APY29_14820 PF00210 Ferritin-like domain APY29_14830 PF07715 TonB-dependent Receptor Plug Domain APY29_14830 PF00593 TonB dependent receptor APY29_14840 PF00733 Asparagine synthase APY29_14840 PF13537 Glutamine amidotransferase domain APY29_14845 PF07687 Peptidase dimerisation domain APY29_14845 PF01546 Peptidase family M20/M25/M40 APY29_14850 PF03960 ArsC family APY29_14855 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_14855 PF14602 Hexapeptide repeat of succinyl-transferase APY29_14855 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APY29_14860 PF01966 HD domain APY29_14860 PF01909 Nucleotidyltransferase domain APY29_14860 PF08335 GlnD PII-uridylyltransferase APY29_14865 PF00557 Metallopeptidase family M24 APY29_14900 PF00318 Ribosomal protein S2 APY29_14905 PF00889 Elongation factor TS APY29_14910 PF00072 Response regulator receiver domain APY29_14910 PF00990 Diguanylate cyclase, GGDEF domain APY29_14915 PF00696 Amino acid kinase family APY29_14920 PF01765 Ribosome recycling factor APY29_14925 PF01255 Putative undecaprenyl diphosphate synthase APY29_14935 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APY29_14935 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APY29_14935 PF13288 DXP reductoisomerase C-terminal domain APY29_14940 PF17820 PDZ domain APY29_14940 PF02163 Peptidase family M50 APY29_14945 PF01103 Surface antigen APY29_14945 PF07244 Surface antigen variable number repeat APY29_14955 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APY29_14955 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_14960 PF07977 FabA-like domain APY29_14965 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APY29_14965 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_14970 PF02684 Lipid-A-disaccharide synthetase APY29_14975 PF01351 Ribonuclease HII APY29_14980 PF01336 OB-fold nucleic acid binding domain APY29_14980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APY29_14980 PF14579 Helix-hairpin-helix motif APY29_14980 PF07733 Bacterial DNA polymerase III alpha NTPase domain APY29_14980 PF02811 PHP domain APY29_14985 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APY29_15020 PF03551 Transcriptional regulator PadR-like family APY29_15040 PF02592 Putative vitamin uptake transporter APY29_15050 PF02574 Homocysteine S-methyltransferase APY29_15055 PF00324 Amino acid permease APY29_15060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_15065 PF00005 ABC transporter APY29_15065 PF13732 Domain of unknown function (DUF4162) APY29_15080 PF01588 Putative tRNA binding domain APY29_15080 PF09334 tRNA synthetases class I (M) APY29_15090 PF04060 Putative Fe-S cluster APY29_15110 PF04545 Sigma-70, region 4 APY29_15110 PF04542 Sigma-70 region 2 APY29_15155 PF01042 Endoribonuclease L-PSP APY29_15165 PF09924 Uncharacterised conserved protein (DUF2156) APY29_15165 PF03706 Lysylphosphatidylglycerol synthase TM region APY29_15200 PF07690 Major Facilitator Superfamily APY29_15210 PF08274 PhnA Zinc-Ribbon APY29_15210 PF03831 PhnA domain APY29_15220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_15245 PF01258 Prokaryotic dksA/traR C4-type zinc finger APY29_15255 PF07043 Protein of unknown function (DUF1328) APY29_15260 PF13276 HTH-like domain APY29_15260 PF00665 Integrase core domain APY29_15260 PF13333 Integrase core domain APY29_15265 PF01527 Transposase APY29_15270 PF01863 Protein of unknown function DUF45 APY29_15280 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APY29_15280 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APY29_15285 PF00082 Subtilase family APY29_15285 PF12951 Passenger-associated-transport-repeat APY29_15285 PF03797 Autotransporter beta-domain APY29_15290 PF00108 Thiolase, N-terminal domain APY29_15290 PF02803 Thiolase, C-terminal domain APY29_15305 PF00072 Response regulator receiver domain APY29_15305 PF00990 Diguanylate cyclase, GGDEF domain APY29_15320 PF01068 ATP dependent DNA ligase domain APY29_15320 PF04679 ATP dependent DNA ligase C terminal region APY29_15320 PF04675 DNA ligase N terminus APY29_15330 PF04675 DNA ligase N terminus APY29_15330 PF01068 ATP dependent DNA ligase domain APY29_15330 PF04679 ATP dependent DNA ligase C terminal region APY29_15335 PF00271 Helicase conserved C-terminal domain APY29_15335 PF08494 DEAD/H associated APY29_15335 PF00270 DEAD/DEAH box helicase APY29_15345 PF01494 FAD binding domain APY29_15350 PF00313 'Cold-shock' DNA-binding domain APY29_15355 PF01048 Phosphorylase superfamily APY29_15365 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_15370 PF04244 Deoxyribodipyrimidine photo-lyase-related protein APY29_15375 PF01593 Flavin containing amine oxidoreductase APY29_15380 PF01323 DSBA-like thioredoxin domain APY29_15390 PF05958 tRNA (Uracil-5-)-methyltransferase APY29_15400 PF02565 Recombination protein O C terminal APY29_15400 PF11967 Recombination protein O N terminal APY29_15405 PF01926 50S ribosome-binding GTPase APY29_15405 PF07650 KH domain APY29_15410 PF00035 Double-stranded RNA binding motif APY29_15410 PF14622 Ribonuclease-III-like APY29_15420 PF10502 Signal peptidase, peptidase S26 APY29_15425 PF00009 Elongation factor Tu GTP binding domain APY29_15425 PF03144 Elongation factor Tu domain 2 APY29_15425 PF06421 GTP-binding protein LepA C-terminus APY29_15425 PF00679 Elongation factor G C-terminus APY29_15430 PF13180 PDZ domain APY29_15440 PF08281 Sigma-70, region 4 APY29_15440 PF04542 Sigma-70 region 2 APY29_15445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY29_15445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY29_15445 PF00378 Enoyl-CoA hydratase/isomerase APY29_15450 PF01545 Cation efflux family APY29_15455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APY29_15455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY29_15460 PF00378 Enoyl-CoA hydratase/isomerase APY29_15460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY29_15460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY29_15465 PF00378 Enoyl-CoA hydratase/isomerase APY29_15470 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_15470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_15470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_15475 PF00171 Aldehyde dehydrogenase family APY29_15480 PF01381 Helix-turn-helix APY29_15480 PF09856 Predicted transcriptional regulator (DUF2083) APY29_15480 PF06114 IrrE N-terminal-like domain APY29_15490 PF07745 Glycosyl hydrolase family 53 APY29_15495 PF16355 Domain of unknown function (DUF4982) APY29_15495 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 APY29_15495 PF00703 Glycosyl hydrolases family 2 APY29_15495 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_15495 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_15510 PF05598 Transposase domain (DUF772) APY29_15540 PF03527 RHS protein APY29_15540 PF05593 RHS Repeat APY29_15560 PF00488 MutS domain V APY29_15560 PF05192 MutS domain III APY29_15560 PF05188 MutS domain II APY29_15560 PF01624 MutS domain I APY29_15560 PF05190 MutS family domain IV APY29_15570 PF00141 Peroxidase APY29_15575 PF01479 S4 domain APY29_15595 PF01554 MatE APY29_15600 PF01245 Ribosomal protein L19 APY29_15605 PF01746 tRNA (Guanine-1)-methyltransferase APY29_15610 PF01782 RimM N-terminal domain APY29_15610 PF05239 PRC-barrel domain APY29_15615 PF00886 Ribosomal protein S16 APY29_15620 PF01063 Amino-transferase class IV APY29_15625 PF03060 Nitronate monooxygenase APY29_15630 PF02881 SRP54-type protein, helical bundle domain APY29_15630 PF02978 Signal peptide binding domain APY29_15630 PF00448 SRP54-type protein, GTPase domain APY29_15635 PF01578 Cytochrome C assembly protein APY29_15645 PF01263 Aldose 1-epimerase APY29_15655 PF06964 Alpha-L-arabinofuranosidase C-terminal domain APY29_15665 PF00072 Response regulator receiver domain APY29_15670 PF13426 PAS domain APY29_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15670 PF00072 Response regulator receiver domain APY29_15675 PF00072 Response regulator receiver domain APY29_15675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY29_15675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15675 PF01627 Hpt domain APY29_15675 PF00512 His Kinase A (phospho-acceptor) domain APY29_15675 PF00672 HAMP domain APY29_15680 PF01739 CheR methyltransferase, SAM binding domain APY29_15680 PF03705 CheR methyltransferase, all-alpha domain APY29_15685 PF01339 CheB methylesterase APY29_15690 PF00072 Response regulator receiver domain APY29_15690 PF00990 Diguanylate cyclase, GGDEF domain APY29_15695 PF07237 Protein of unknown function (DUF1428) APY29_15700 PF00085 Thioredoxin APY29_15705 PF07715 TonB-dependent Receptor Plug Domain APY29_15705 PF00593 TonB dependent receptor APY29_15710 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain APY29_15710 PF04616 Glycosyl hydrolases family 43 APY29_15715 PF00072 Response regulator receiver domain APY29_15715 PF08448 PAS fold APY29_15715 PF13188 PAS domain APY29_15715 PF00512 His Kinase A (phospho-acceptor) domain APY29_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15720 PF00512 His Kinase A (phospho-acceptor) domain APY29_15720 PF00072 Response regulator receiver domain APY29_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15720 PF00672 HAMP domain APY29_15720 PF17149 Periplasmic sensor domain found in signal transduction proteins APY29_15720 PF01627 Hpt domain APY29_15730 PF13581 Histidine kinase-like ATPase domain APY29_15735 PF01740 STAS domain APY29_15740 PF01740 STAS domain APY29_15740 PF08678 Rsbr N terminal APY29_15750 PF00183 Hsp90 protein APY29_15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15755 PF12833 Helix-turn-helix domain APY29_15765 PF05656 Protein of unknown function (DUF805) APY29_15770 PF18073 Rubredoxin metal binding domain APY29_15780 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APY29_15785 PF00510 Cytochrome c oxidase subunit III APY29_15790 PF00115 Cytochrome C and Quinol oxidase polypeptide I APY29_15795 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APY29_15795 PF06481 COX Aromatic Rich Motif APY29_15800 PF00589 Phage integrase family APY29_15835 PF13087 AAA domain APY29_15835 PF13091 PLD-like domain APY29_15840 PF03389 MobA/MobL family APY29_15840 PF16793 RepB DNA-primase from phage plasmid APY29_15845 PF01527 Transposase APY29_15850 PF00665 Integrase core domain APY29_15850 PF13333 Integrase core domain APY29_15850 PF13276 HTH-like domain APY29_15940 PF02401 LytB protein APY29_15945 PF01252 Signal peptidase (SPase) II APY29_15950 PF00133 tRNA synthetases class I (I, L, M and V) APY29_15950 PF06827 Zinc finger found in FPG and IleRS APY29_15950 PF08264 Anticodon-binding domain of tRNA APY29_15955 PF01687 Riboflavin kinase APY29_15955 PF06574 FAD synthetase APY29_15960 PF03023 Lipid II flippase MurJ APY29_15965 PF01649 Ribosomal protein S20 APY29_15970 PF01926 50S ribosome-binding GTPase APY29_15970 PF01018 GTP1/OBG APY29_15975 PF01016 Ribosomal L27 protein APY29_15980 PF00829 Ribosomal prokaryotic L21 protein APY29_15985 PF00005 ABC transporter APY29_15985 PF17760 UvrA interaction domain APY29_15985 PF17755 UvrA DNA-binding domain APY29_16000 PF00378 Enoyl-CoA hydratase/isomerase APY29_16030 PF04376 Arginine-tRNA-protein transferase, N terminus APY29_16030 PF04377 Arginine-tRNA-protein transferase, C terminus APY29_16040 PF02222 ATP-grasp domain APY29_16065 PF00730 HhH-GPD superfamily base excision DNA repair protein APY29_16080 PF00196 Bacterial regulatory proteins, luxR family APY29_16080 PF00072 Response regulator receiver domain APY29_16085 PF07730 Histidine kinase APY29_16100 PF05209 Septum formation inhibitor MinC, N-terminal domain APY29_16100 PF03775 Septum formation inhibitor MinC, C-terminal domain APY29_16105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_16110 PF03776 Septum formation topological specificity factor MinE APY29_16120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_16120 PF00512 His Kinase A (phospho-acceptor) domain APY29_16120 PF08521 Two-component sensor kinase N-terminal APY29_16125 PF00486 Transcriptional regulatory protein, C terminal APY29_16125 PF00072 Response regulator receiver domain APY29_16140 PF08019 Phosphoethanolamine transferase EptA/EptB APY29_16140 PF00884 Sulfatase APY29_16155 PF07690 Major Facilitator Superfamily APY29_16160 PF02347 Glycine cleavage system P-protein APY29_16165 PF00135 Carboxylesterase family APY29_16170 PF00248 Aldo/keto reductase family APY29_16175 PF18011 C-terminal domain found in long catalases APY29_16175 PF06628 Catalase-related immune-responsive APY29_16175 PF00199 Catalase APY29_16210 PF12833 Helix-turn-helix domain APY29_16210 PF02311 AraC-like ligand binding domain APY29_16240 PF07676 WD40-like Beta Propeller Repeat APY29_16240 PF00326 Prolyl oligopeptidase family APY29_16240 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_16255 PF03169 OPT oligopeptide transporter protein APY29_16265 PF00326 Prolyl oligopeptidase family APY29_16270 PF14579 Helix-hairpin-helix motif APY29_16270 PF07733 Bacterial DNA polymerase III alpha NTPase domain APY29_16270 PF02811 PHP domain APY29_16270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APY29_16285 PF01726 LexA DNA binding domain APY29_16285 PF00717 Peptidase S24-like APY29_16320 PF01799 [2Fe-2S] binding domain APY29_16320 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_16325 PF03450 CO dehydrogenase flavoprotein C-terminal domain APY29_16325 PF00941 FAD binding domain in molybdopterin dehydrogenase APY29_16330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APY29_16330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY29_16335 PF17755 UvrA DNA-binding domain APY29_16370 PF00106 short chain dehydrogenase APY29_16375 PF01527 Transposase APY29_16380 PF13333 Integrase core domain APY29_16380 PF00665 Integrase core domain APY29_16380 PF13276 HTH-like domain APY29_16385 PF17678 Glycosyl hydrolase family 92 N-terminal domain APY29_16385 PF07971 Glycosyl hydrolase family 92 APY29_16405 PF01256 Carbohydrate kinase APY29_16410 PF00300 Histidine phosphatase superfamily (branch 1) APY29_16410 PF13456 Reverse transcriptase-like APY29_16415 PF13977 BetI-type transcriptional repressor, C-terminal APY29_16415 PF00440 Bacterial regulatory proteins, tetR family APY29_16430 PF01555 DNA methylase APY29_16445 PF00271 Helicase conserved C-terminal domain APY29_16445 PF00176 SNF2 family N-terminal domain APY29_16470 PF00440 Bacterial regulatory proteins, tetR family APY29_16485 PF11838 ERAP1-like C-terminal domain APY29_16485 PF01433 Peptidase family M1 domain APY29_16490 PF00709 Adenylosuccinate synthetase APY29_16500 PF01145 SPFH domain / Band 7 family APY29_16505 PF12221 Bacterial membrane protein N terminal APY29_16505 PF01145 SPFH domain / Band 7 family APY29_16510 PF00072 Response regulator receiver domain APY29_16515 PF00226 DnaJ domain APY29_16515 PF01556 DnaJ C terminal domain APY29_16525 PF08534 Redoxin APY29_16535 PF00905 Penicillin binding protein transpeptidase domain APY29_16535 PF06832 Penicillin-Binding Protein C-terminus Family APY29_16535 PF00912 Transglycosylase APY29_16550 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain APY29_16550 PF07703 Alpha-2-macroglobulin bait region domain APY29_16550 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain APY29_16550 PF01835 MG2 domain APY29_16550 PF17962 Bacterial macroglobulin domain 6 APY29_16550 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain APY29_16550 PF00207 Alpha-2-macroglobulin family APY29_16550 PF11974 Bacterial alpha-2-macroglobulin MG3 domain APY29_16560 PF00593 TonB dependent receptor APY29_16560 PF07715 TonB-dependent Receptor Plug Domain APY29_16565 PF04303 PrpF protein APY29_16575 PF00694 Aconitase C-terminal domain APY29_16575 PF00330 Aconitase family (aconitate hydratase) APY29_16580 PF00285 Citrate synthase, C-terminal domain APY29_16590 PF00158 Sigma-54 interaction domain APY29_16590 PF06506 Propionate catabolism activator APY29_16590 PF02954 Bacterial regulatory protein, Fis family APY29_16610 PF09115 DNA polymerase III, delta subunit, C terminal APY29_16615 PF02618 YceG-like family APY29_16620 PF04715 Anthranilate synthase component I, N terminal region APY29_16620 PF00425 chorismate binding enzyme APY29_16625 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_16625 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_16630 PF00550 Phosphopantetheine attachment site APY29_16640 PF00698 Acyl transferase domain APY29_16650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_16650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_16655 PF01783 Ribosomal L32p protein family APY29_16660 PF02620 Large ribosomal RNA subunit accumulation protein YceD APY29_16665 PF02545 Maf-like protein APY29_16685 PF07726 ATPase family associated with various cellular activities (AAA) APY29_16685 PF17863 AAA lid domain APY29_16695 PF11992 Domain of unknown function (DUF3488) APY29_16695 PF01841 Transglutaminase-like superfamily APY29_16695 PF13559 Domain of unknown function (DUF4129) APY29_16705 PF01230 HIT domain APY29_16710 PF13662 Toprim domain APY29_16710 PF02132 RecR protein APY29_16715 PF02575 YbaB/EbfC DNA-binding family APY29_16720 PF12170 DNA polymerase III tau subunit V interacting with alpha APY29_16720 PF12169 DNA polymerase III subunits gamma and tau domain III APY29_16730 PF02391 MoaE protein APY29_16735 PF02597 ThiS family APY29_16740 PF01967 MoaC family APY29_16750 PF06463 Molybdenum Cofactor Synthesis C APY29_16750 PF04055 Radical SAM superfamily APY29_16755 PF12706 Beta-lactamase superfamily domain APY29_16755 PF00753 Metallo-beta-lactamase superfamily APY29_16765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APY29_16785 PF00929 Exonuclease APY29_16790 PF00075 RNase H APY29_16800 PF16123 Hydroxyacylglutathione hydrolase C-terminus APY29_16800 PF00753 Metallo-beta-lactamase superfamily APY29_16805 PF01476 LysM domain APY29_16805 PF05257 CHAP domain APY29_16830 PF00216 Bacterial DNA-binding protein APY29_16835 PF05362 Lon protease (S16) C-terminal proteolytic domain APY29_16835 PF02190 ATP-dependent protease La (LON) substrate-binding domain APY29_16835 PF00004 ATPase family associated with various cellular activities (AAA) APY29_16840 PF07724 AAA domain (Cdc48 subfamily) APY29_16840 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_16840 PF06689 ClpX C4-type zinc finger APY29_16845 PF00574 Clp protease APY29_16850 PF05697 Bacterial trigger factor protein (TF) APY29_16850 PF05698 Bacterial trigger factor protein (TF) C-terminus APY29_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_16860 PF00512 His Kinase A (phospho-acceptor) domain APY29_16860 PF00989 PAS fold APY29_16890 PF00180 Isocitrate/isopropylmalate dehydrogenase APY29_16900 PF00462 Glutaredoxin APY29_16905 PF13181 Tetratricopeptide repeat APY29_16905 PF01435 Peptidase family M48 APY29_16910 PF00486 Transcriptional regulatory protein, C terminal APY29_16910 PF00072 Response regulator receiver domain APY29_16915 PF00512 His Kinase A (phospho-acceptor) domain APY29_16915 PF00989 PAS fold APY29_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_16915 PF11808 Phosphate regulon sensor protein PhoR APY29_16920 PF13089 Polyphosphate kinase N-terminal domain APY29_16920 PF02503 Polyphosphate kinase middle domain APY29_16920 PF17941 Polyphosphate kinase C-terminal domain 1 APY29_16920 PF13090 Polyphosphate kinase C-terminal domain 2 APY29_16925 PF02541 Ppx/GppA phosphatase family APY29_16935 PF01569 PAP2 superfamily APY29_16940 PF00149 Calcineurin-like phosphoesterase APY29_16975 PF00156 Phosphoribosyl transferase domain APY29_16990 PF02875 Mur ligase family, glutamate ligase domain APY29_16990 PF08245 Mur ligase middle domain APY29_16995 PF00300 Histidine phosphatase superfamily (branch 1) APY29_17000 PF10459 Peptidase S46 APY29_17005 PF10459 Peptidase S46 APY29_17010 PF04185 Phosphoesterase family APY29_17010 PF05506 Domain of unknown function (DUF756) APY29_17020 PF08240 Alcohol dehydrogenase GroES-like domain APY29_17020 PF00107 Zinc-binding dehydrogenase APY29_17030 PF00005 ABC transporter APY29_17030 PF17850 CysA C-terminal regulatory domain APY29_17030 PF12857 TOBE-like domain APY29_17035 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17040 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17050 PF00155 Aminotransferase class I and II APY29_17060 PF00849 RNA pseudouridylate synthase APY29_17070 PF00691 OmpA family APY29_17070 PF05736 OprF membrane domain APY29_17075 PF00107 Zinc-binding dehydrogenase APY29_17075 PF08240 Alcohol dehydrogenase GroES-like domain APY29_17080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APY29_17080 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_17090 PF02798 Glutathione S-transferase, N-terminal domain APY29_17090 PF00043 Glutathione S-transferase, C-terminal domain APY29_17095 PF00056 lactate/malate dehydrogenase, NAD binding domain APY29_17095 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APY29_17100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APY29_17125 PF01474 Class-II DAHP synthetase family APY29_17140 PF02600 Disulfide bond formation protein DsbB APY29_17145 PF01196 Ribosomal protein L17 APY29_17150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APY29_17150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APY29_17150 PF01000 RNA polymerase Rpb3/RpoA insert domain APY29_17155 PF00163 Ribosomal protein S4/S9 N-terminal domain APY29_17155 PF01479 S4 domain APY29_17160 PF00411 Ribosomal protein S11 APY29_17165 PF00416 Ribosomal protein S13/S18 APY29_17170 PF00344 SecY translocase APY29_17175 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APY29_17180 PF00327 Ribosomal protein L30p/L7e APY29_17185 PF00333 Ribosomal protein S5, N-terminal domain APY29_17185 PF03719 Ribosomal protein S5, C-terminal domain APY29_17190 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APY29_17195 PF00347 Ribosomal protein L6 APY29_17200 PF00410 Ribosomal protein S8 APY29_17205 PF00253 Ribosomal protein S14p/S29e APY29_17210 PF00281 Ribosomal protein L5 APY29_17210 PF00673 ribosomal L5P family C-terminus APY29_17215 PF00467 KOW motif APY29_17215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APY29_17220 PF00238 Ribosomal protein L14p/L23e APY29_17225 PF00366 Ribosomal protein S17 APY29_17230 PF00831 Ribosomal L29 protein APY29_17235 PF00252 Ribosomal protein L16p/L10e APY29_17240 PF00189 Ribosomal protein S3, C-terminal domain APY29_17240 PF07650 KH domain APY29_17245 PF00237 Ribosomal protein L22p/L17e APY29_17250 PF00203 Ribosomal protein S19 APY29_17255 PF03947 Ribosomal Proteins L2, C-terminal domain APY29_17255 PF00181 Ribosomal Proteins L2, RNA binding domain APY29_17260 PF00276 Ribosomal protein L23 APY29_17265 PF00573 Ribosomal protein L4/L1 family APY29_17270 PF00297 Ribosomal protein L3 APY29_17275 PF00338 Ribosomal protein S10p/S20e APY29_17280 PF03144 Elongation factor Tu domain 2 APY29_17280 PF03143 Elongation factor Tu C-terminal domain APY29_17280 PF00009 Elongation factor Tu GTP binding domain APY29_17285 PF03144 Elongation factor Tu domain 2 APY29_17285 PF00009 Elongation factor Tu GTP binding domain APY29_17285 PF03764 Elongation factor G, domain IV APY29_17285 PF14492 Elongation Factor G, domain II APY29_17285 PF00679 Elongation factor G C-terminus APY29_17290 PF00177 Ribosomal protein S7p/S5e APY29_17295 PF00164 Ribosomal protein S12/S23 APY29_17300 PF04997 RNA polymerase Rpb1, domain 1 APY29_17300 PF00623 RNA polymerase Rpb1, domain 2 APY29_17300 PF04983 RNA polymerase Rpb1, domain 3 APY29_17300 PF05000 RNA polymerase Rpb1, domain 4 APY29_17300 PF04998 RNA polymerase Rpb1, domain 5 APY29_17305 PF04560 RNA polymerase Rpb2, domain 7 APY29_17305 PF04563 RNA polymerase beta subunit APY29_17305 PF04561 RNA polymerase Rpb2, domain 2 APY29_17305 PF10385 RNA polymerase beta subunit external 1 domain APY29_17305 PF00562 RNA polymerase Rpb2, domain 6 APY29_17305 PF04565 RNA polymerase Rpb2, domain 3 APY29_17310 PF00542 Ribosomal protein L7/L12 C-terminal domain APY29_17310 PF16320 Ribosomal protein L7/L12 dimerisation domain APY29_17315 PF00466 Ribosomal protein L10 APY29_17320 PF00687 Ribosomal protein L1p/L10e family APY29_17325 PF00298 Ribosomal protein L11, RNA binding domain APY29_17325 PF03946 Ribosomal protein L11, N-terminal domain APY29_17330 PF02357 Transcription termination factor nusG APY29_17330 PF00467 KOW motif APY29_17335 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APY29_17345 PF00009 Elongation factor Tu GTP binding domain APY29_17345 PF03143 Elongation factor Tu C-terminal domain APY29_17345 PF03144 Elongation factor Tu domain 2 APY29_17365 PF06071 Protein of unknown function (DUF933) APY29_17365 PF01926 50S ribosome-binding GTPase APY29_17370 PF01195 Peptidyl-tRNA hydrolase APY29_17375 PF01386 Ribosomal L25p family APY29_17375 PF14693 Ribosomal protein TL5, C-terminal domain APY29_17380 PF14572 Phosphoribosyl synthetase-associated domain APY29_17380 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APY29_17390 PF08544 GHMP kinases C terminal APY29_17390 PF00288 GHMP kinases N terminal domain APY29_17395 PF03550 Outer membrane lipoprotein LolB APY29_17405 PF01488 Shikimate / quinate 5-dehydrogenase APY29_17405 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APY29_17405 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APY29_17410 PF03462 PCRF domain APY29_17410 PF00472 RF-1 domain APY29_17420 PF00994 Probable molybdopterin binding domain APY29_17425 PF03976 Polyphosphate kinase 2 (PPK2) APY29_17435 PF00708 Acylphosphatase APY29_17440 PF08534 Redoxin APY29_17445 PF03631 Virulence factor BrkB APY29_17450 PF03358 NADPH-dependent FMN reductase APY29_17460 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain APY29_17460 PF17189 Glycosyl hydrolase family 30 beta sandwich domain APY29_17470 PF04073 Aminoacyl-tRNA editing domain APY29_17475 PF04151 Bacterial pre-peptidase C-terminal domain APY29_17475 PF00082 Subtilase family APY29_17490 PF01063 Amino-transferase class IV APY29_17505 PF02233 NAD(P) transhydrogenase beta subunit APY29_17510 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APY29_17530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APY29_17530 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APY29_17530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APY29_17560 PF01612 3'-5' exonuclease APY29_17560 PF00476 DNA polymerase family A APY29_17560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APY29_17560 PF01367 5'-3' exonuclease, C-terminal SAM fold APY29_17565 PF00293 NUDIX domain APY29_17575 PF00561 alpha/beta hydrolase fold APY29_17580 PF17827 PrmC N-terminal domain APY29_17580 PF05175 Methyltransferase small domain APY29_17585 PF00578 AhpC/TSA family APY29_17585 PF10417 C-terminal domain of 1-Cys peroxiredoxin APY29_17590 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_17590 PF13192 Thioredoxin domain APY29_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_17595 PF03466 LysR substrate binding domain APY29_17600 PF14760 Rnk N-terminus APY29_17600 PF01272 Transcription elongation factor, GreA/GreB, C-term APY29_17605 PF00923 Transaldolase/Fructose-6-phosphate aldolase APY29_17615 PF01625 Peptide methionine sulfoxide reductase APY29_17625 PF00196 Bacterial regulatory proteins, luxR family APY29_17625 PF00072 Response regulator receiver domain APY29_17630 PF00072 Response regulator receiver domain APY29_17630 PF00512 His Kinase A (phospho-acceptor) domain APY29_17630 PF01627 Hpt domain APY29_17630 PF17149 Periplasmic sensor domain found in signal transduction proteins APY29_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_17630 PF00672 HAMP domain APY29_17635 PF00990 Diguanylate cyclase, GGDEF domain APY29_17635 PF00072 Response regulator receiver domain APY29_17650 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY29_17650 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APY29_17660 PF00892 EamA-like transporter family APY29_17690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APY29_17690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY29_17695 PF08450 SMP-30/Gluconolactonase/LRE-like region APY29_17715 PF00378 Enoyl-CoA hydratase/isomerase APY29_17720 PF00171 Aldehyde dehydrogenase family APY29_17725 PF13193 AMP-binding enzyme C-terminal domain APY29_17725 PF00501 AMP-binding enzyme APY29_17730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_17730 PF03466 LysR substrate binding domain APY29_17735 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY29_17735 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit APY29_17740 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY29_17745 PF00392 Bacterial regulatory proteins, gntR family APY29_17745 PF07729 FCD domain APY29_17765 PF01494 FAD binding domain APY29_17770 PF01494 FAD binding domain APY29_17780 PF01923 Cobalamin adenosyltransferase APY29_17785 PF00850 Histone deacetylase domain APY29_17795 PF03968 OstA-like protein APY29_17795 PF04453 LPS transport system D APY29_17800 PF00639 PPIC-type PPIASE domain APY29_17800 PF09312 SurA N-terminal domain APY29_17805 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APY29_17810 PF00398 Ribosomal RNA adenine dimethylase APY29_17815 PF04379 ApaG domain APY29_17820 PF00149 Calcineurin-like phosphoesterase APY29_17825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APY29_17825 PF00005 ABC transporter APY29_17830 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17830 PF12911 N-terminal TM domain of oligopeptide transport permease C APY29_17835 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APY29_17845 PF00296 Luciferase-like monooxygenase APY29_17865 PF03358 NADPH-dependent FMN reductase APY29_17870 PF00296 Luciferase-like monooxygenase APY29_17880 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17885 PF00005 ABC transporter APY29_17890 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APY29_17890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_17895 PF00158 Sigma-54 interaction domain APY29_17900 PF00186 Dihydrofolate reductase APY29_17910 PF00303 Thymidylate synthase APY29_17915 PF01790 Prolipoprotein diacylglyceryl transferase APY29_17935 PF01219 Prokaryotic diacylglycerol kinase APY29_17950 PF00486 Transcriptional regulatory protein, C terminal APY29_17950 PF00072 Response regulator receiver domain APY29_17955 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_17960 PF00005 ABC transporter APY29_17970 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APY29_17980 PF00005 ABC transporter APY29_17985 PF00528 Binding-protein-dependent transport system inner membrane component APY29_18005 PF00593 TonB dependent receptor APY29_18005 PF07715 TonB-dependent Receptor Plug Domain APY29_18015 PF00248 Aldo/keto reductase family APY29_18020 PF07670 Nucleoside recognition APY29_18020 PF07662 Na+ dependent nucleoside transporter C-terminus APY29_18020 PF01773 Na+ dependent nucleoside transporter N-terminus APY29_18025 PF00294 pfkB family carbohydrate kinase APY29_18035 PF01207 Dihydrouridine synthase (Dus) APY29_18040 PF13649 Methyltransferase domain APY29_18050 PF00438 S-adenosylmethionine synthetase, N-terminal domain APY29_18050 PF02773 S-adenosylmethionine synthetase, C-terminal domain APY29_18050 PF02772 S-adenosylmethionine synthetase, central domain APY29_18055 PF00328 Histidine phosphatase superfamily (branch 2) APY29_18085 PF00311 Phosphoenolpyruvate carboxylase APY29_18095 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APY29_18095 PF05221 S-adenosyl-L-homocysteine hydrolase APY29_18100 PF13649 Methyltransferase domain APY29_18130 PF00128 Alpha amylase, catalytic domain APY29_18135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY29_18150 PF09286 Pro-kumamolisin, activation domain APY29_18150 PF00082 Subtilase family APY29_18155 PF00107 Zinc-binding dehydrogenase APY29_18155 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_18155 PF14765 Polyketide synthase dehydratase APY29_18155 PF00550 Phosphopantetheine attachment site APY29_18155 PF08659 KR domain APY29_18155 PF08240 Alcohol dehydrogenase GroES-like domain APY29_18155 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_18155 PF00698 Acyl transferase domain APY29_18155 PF16197 Ketoacyl-synthetase C-terminal extension APY29_18165 PF02219 Methylenetetrahydrofolate reductase APY29_18175 PF00293 NUDIX domain APY29_18180 PF02810 SEC-C motif APY29_18180 PF07517 SecA DEAD-like domain APY29_18180 PF01043 SecA preprotein cross-linking domain APY29_18180 PF07516 SecA Wing and Scaffold domain APY29_18185 PF08525 Opacity-associated protein A N-terminal motif APY29_18185 PF01551 Peptidase family M23 APY29_18185 PF01476 LysM domain APY29_18195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APY29_18200 PF00091 Tubulin/FtsZ family, GTPase domain APY29_18200 PF12327 FtsZ family, C-terminal domain APY29_18205 PF02491 SHS2 domain inserted in FTSA APY29_18210 PF08478 POTRA domain, FtsQ-type APY29_18210 PF03799 Cell division protein FtsQ APY29_18215 PF01820 D-ala D-ala ligase N-terminus APY29_18215 PF07478 D-ala D-ala ligase C-terminus APY29_18220 PF08245 Mur ligase middle domain APY29_18220 PF02875 Mur ligase family, glutamate ligase domain APY29_18220 PF01225 Mur ligase family, catalytic domain APY29_18225 PF04101 Glycosyltransferase family 28 C-terminal domain APY29_18225 PF03033 Glycosyltransferase family 28 N-terminal domain APY29_18230 PF01098 Cell cycle protein APY29_18235 PF00953 Glycosyl transferase family 4 APY29_18240 PF08245 Mur ligase middle domain APY29_18240 PF01225 Mur ligase family, catalytic domain APY29_18240 PF02875 Mur ligase family, glutamate ligase domain APY29_18245 PF02875 Mur ligase family, glutamate ligase domain APY29_18245 PF01225 Mur ligase family, catalytic domain APY29_18245 PF08245 Mur ligase middle domain APY29_18250 PF00905 Penicillin binding protein transpeptidase domain APY29_18250 PF03717 Penicillin-binding Protein dimerisation domain APY29_18255 PF04999 Cell division protein FtsL APY29_18260 PF01795 MraW methylase family APY29_18265 PF02381 MraZ protein, putative antitoxin-like APY29_18280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY29_18290 PF02021 Uncharacterised protein family UPF0102 APY29_18295 PF04307 LexA-binding, inner membrane-associated putative hydrolase APY29_18300 PF02913 FAD linked oxidases, C-terminal domain APY29_18300 PF01565 FAD binding domain APY29_18310 PF00486 Transcriptional regulatory protein, C terminal APY29_18310 PF00072 Response regulator receiver domain APY29_18315 PF13493 Domain of unknown function (DUF4118) APY29_18315 PF13492 GAF domain APY29_18315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18315 PF00512 His Kinase A (phospho-acceptor) domain APY29_18315 PF02702 Osmosensitive K+ channel His kinase sensor domain APY29_18335 PF02669 K+-transporting ATPase, c chain APY29_18345 PF03814 Potassium-transporting ATPase A subunit APY29_18365 PF00586 AIR synthase related protein, N-terminal domain APY29_18365 PF02769 AIR synthase related protein, C-terminal domain APY29_18370 PF01029 NusB family APY29_18375 PF00885 6,7-dimethyl-8-ribityllumazine synthase APY29_18380 PF00925 GTP cyclohydrolase II APY29_18380 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APY29_18405 PF01872 RibD C-terminal domain APY29_18405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APY29_18415 PF03477 ATP cone domain APY29_18420 PF00464 Serine hydroxymethyltransferase APY29_18430 PF12848 ABC transporter APY29_18430 PF00005 ABC transporter APY29_18440 PF00892 EamA-like transporter family APY29_18445 PF02567 Phenazine biosynthesis-like protein APY29_18450 PF00392 Bacterial regulatory proteins, gntR family APY29_18450 PF00155 Aminotransferase class I and II APY29_18460 PF00756 Putative esterase APY29_18465 PF04828 Glutathione-dependent formaldehyde-activating enzyme APY29_18470 PF08240 Alcohol dehydrogenase GroES-like domain APY29_18470 PF00107 Zinc-binding dehydrogenase APY29_18475 PF02583 Metal-sensitive transcriptional repressor APY29_18490 PF00072 Response regulator receiver domain APY29_18490 PF00486 Transcriptional regulatory protein, C terminal APY29_18495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18495 PF00672 HAMP domain APY29_18495 PF00512 His Kinase A (phospho-acceptor) domain APY29_18500 PF04107 Glutamate-cysteine ligase family 2(GCS2) APY29_18515 PF01926 50S ribosome-binding GTPase APY29_18520 PF00034 Cytochrome c APY29_18530 PF01323 DSBA-like thioredoxin domain APY29_18540 PF02028 BCCT, betaine/carnitine/choline family transporter APY29_18545 PF00171 Aldehyde dehydrogenase family APY29_18550 PF00732 GMC oxidoreductase APY29_18550 PF05199 GMC oxidoreductase APY29_18555 PF01743 Poly A polymerase head domain APY29_18555 PF01966 HD domain APY29_18555 PF12627 Probable RNA and SrmB- binding site of polymerase A APY29_18565 PF01979 Amidohydrolase family APY29_18570 PF01380 SIS domain APY29_18575 PF00356 Bacterial regulatory proteins, lacI family APY29_18580 PF07690 Major Facilitator Superfamily APY29_18600 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_18600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_18600 PF00703 Glycosyl hydrolases family 2 APY29_18600 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 APY29_18600 PF16355 Domain of unknown function (DUF4982) APY29_18625 PF03934 Type II secretion system (T2SS), protein K APY29_18630 PF11612 Type II secretion system (T2SS), protein J APY29_18630 PF07963 Prokaryotic N-terminal methylation motif APY29_18635 PF07963 Prokaryotic N-terminal methylation motif APY29_18635 PF02501 Type II secretion system (T2SS), protein I APY29_18640 PF07963 Prokaryotic N-terminal methylation motif APY29_18640 PF12019 Type II transport protein GspH APY29_18645 PF07963 Prokaryotic N-terminal methylation motif APY29_18645 PF08334 Type II secretion system (T2SS), protein G APY29_18650 PF00482 Type II secretion system (T2SS), protein F APY29_18655 PF00437 Type II/IV secretion system protein APY29_18660 PF03958 Bacterial type II/III secretion system short domain APY29_18660 PF00263 Bacterial type II and III secretion system protein APY29_18700 PF00106 short chain dehydrogenase APY29_18705 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APY29_18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18710 PF00512 His Kinase A (phospho-acceptor) domain APY29_18715 PF00072 Response regulator receiver domain APY29_18720 PF00360 Phytochrome region APY29_18720 PF01590 GAF domain APY29_18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18720 PF00512 His Kinase A (phospho-acceptor) domain APY29_18720 PF08446 PAS fold APY29_18725 PF04972 BON domain APY29_18735 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APY29_18735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY29_18770 PF00293 NUDIX domain APY29_18770 PF01467 Cytidylyltransferase-like APY29_18780 PF03466 LysR substrate binding domain APY29_18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_18790 PF11818 C-terminal domain of tail specific protease (DUF3340) APY29_18790 PF00595 PDZ domain APY29_18790 PF03572 Peptidase family S41 APY29_18790 PF17804 Tail specific protease N-terminal domain APY29_18795 PF04055 Radical SAM superfamily APY29_18795 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family APY29_18800 PF03099 Biotin/lipoate A/B protein ligase family APY29_18805 PF04359 Protein of unknown function (DUF493) APY29_18815 PF00768 D-alanyl-D-alanine carboxypeptidase APY29_18815 PF07943 Penicillin-binding protein 5, C-terminal domain APY29_18825 PF05036 Sporulation related domain APY29_18825 PF03330 Lytic transglycolase APY29_18830 PF13406 Transglycosylase SLT domain APY29_18835 PF00295 Glycosyl hydrolases family 28 APY29_18840 PF01098 Cell cycle protein APY29_18845 PF00905 Penicillin binding protein transpeptidase domain APY29_18845 PF03717 Penicillin-binding Protein dimerisation domain APY29_18855 PF04085 rod shape-determining protein MreC APY29_18865 PF00294 pfkB family carbohydrate kinase APY29_18870 PF01590 GAF domain APY29_18870 PF02954 Bacterial regulatory protein, Fis family APY29_18870 PF00158 Sigma-54 interaction domain APY29_18880 PF08240 Alcohol dehydrogenase GroES-like domain APY29_18880 PF00107 Zinc-binding dehydrogenase APY29_18895 PF00497 Bacterial extracellular solute-binding proteins, family 3 APY29_18900 PF13360 PQQ-like domain APY29_18920 PF01433 Peptidase family M1 domain APY29_18920 PF11838 ERAP1-like C-terminal domain APY29_18925 PF00563 EAL domain APY29_18925 PF03707 Bacterial signalling protein N terminal repeat APY29_18925 PF00990 Diguanylate cyclase, GGDEF domain APY29_18930 PF01209 ubiE/COQ5 methyltransferase family APY29_18940 PF13533 Biotin-lipoyl like APY29_18945 PF13673 Acetyltransferase (GNAT) domain APY29_18955 PF00004 ATPase family associated with various cellular activities (AAA) APY29_18955 PF07724 AAA domain (Cdc48 subfamily) APY29_18955 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_18960 PF00227 Proteasome subunit APY29_18965 PF00589 Phage integrase family APY29_18965 PF02899 Phage integrase, N-terminal SAM-like domain APY29_18975 PF01678 Diaminopimelate epimerase APY29_18985 PF04304 Protein of unknown function (DUF454) APY29_18990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APY29_18990 PF00326 Prolyl oligopeptidase family APY29_18995 PF00155 Aminotransferase class I and II APY29_19005 PF00326 Prolyl oligopeptidase family APY29_19005 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APY29_19030 PF03900 Porphobilinogen deaminase, C-terminal domain APY29_19030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APY29_19035 PF04397 LytTr DNA-binding domain APY29_19035 PF00072 Response regulator receiver domain APY29_19040 PF07694 5TMR of 5TMR-LYT APY29_19040 PF06580 Histidine kinase APY29_19050 PF13632 Glycosyl transferase family group 2 APY29_19065 PF08448 PAS fold APY29_19065 PF00990 Diguanylate cyclase, GGDEF domain APY29_19070 PF01740 STAS domain APY29_19070 PF00916 Sulfate permease family APY29_19075 PF00553 Cellulose binding domain APY29_19075 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_19080 PF00672 HAMP domain APY29_19080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_19080 PF02203 Tar ligand binding domain homologue APY29_19085 PF00563 EAL domain APY29_19085 PF00990 Diguanylate cyclase, GGDEF domain APY29_19085 PF08447 PAS fold APY29_19085 PF08448 PAS fold APY29_19110 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APY29_19110 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APY29_19120 PF01204 Trehalase APY29_19130 PF01544 CorA-like Mg2+ transporter protein APY29_19140 PF00324 Amino acid permease APY29_19150 PF00497 Bacterial extracellular solute-binding proteins, family 3 APY29_19155 PF00892 EamA-like transporter family APY29_19175 PF00990 Diguanylate cyclase, GGDEF domain APY29_19175 PF05230 MASE2 domain APY29_19180 PF07759 Protein of unknown function (DUF1615) APY29_19190 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_19190 PF00326 Prolyl oligopeptidase family APY29_19195 PF03176 MMPL family APY29_19195 PF12823 Domain of unknown function (DUF3817) APY29_19220 PF13409 Glutathione S-transferase, N-terminal domain APY29_19230 PF00106 short chain dehydrogenase APY29_19245 PF00106 short chain dehydrogenase APY29_19285 PF00456 Transketolase, thiamine diphosphate binding domain APY29_19285 PF17831 Pyruvate dehydrogenase E1 component middle domain APY29_19290 PF07745 Glycosyl hydrolase family 53 APY29_19320 PF13419 Haloacid dehalogenase-like hydrolase APY29_19325 PF07729 FCD domain APY29_19325 PF00392 Bacterial regulatory proteins, gntR family APY29_19335 PF00698 Acyl transferase domain APY29_19340 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase APY29_19345 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG APY29_19355 PF01039 Carboxyl transferase domain APY29_19360 PF06857 Malonate decarboxylase delta subunit (MdcD) APY29_19365 PF16957 Malonate decarboxylase, alpha subunit, transporter APY29_19390 PF04264 YceI-like domain APY29_19395 PF00881 Nitroreductase family APY29_19415 PF02592 Putative vitamin uptake transporter APY29_19420 PF08335 GlnD PII-uridylyltransferase APY29_19420 PF03710 Glutamate-ammonia ligase adenylyltransferase APY29_19430 PF08450 SMP-30/Gluconolactonase/LRE-like region APY29_19445 PF00793 DAHP synthetase I family APY29_19460 PF00118 TCP-1/cpn60 chaperonin family APY29_19465 PF00166 Chaperonin 10 Kd subunit APY29_19470 PF04231 Endonuclease I APY29_19475 PF00106 short chain dehydrogenase APY29_19485 PF01852 START domain APY29_19500 PF03091 CutA1 divalent ion tolerance protein APY29_19505 PF11412 Disulphide bond corrector protein DsbC APY29_19505 PF02683 Cytochrome C biogenesis protein transmembrane region APY29_19510 PF01220 Dehydroquinase class II APY29_19515 PF00364 Biotin-requiring enzyme APY29_19525 PF00289 Biotin carboxylase, N-terminal domain APY29_19525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_19525 PF02785 Biotin carboxylase C-terminal domain APY29_19540 PF13333 Integrase core domain APY29_19540 PF13276 HTH-like domain APY29_19540 PF00665 Integrase core domain APY29_19545 PF01527 Transposase APY29_19560 PF01381 Helix-turn-helix APY29_19575 PF02954 Bacterial regulatory protein, Fis family APY29_19605 PF00782 Dual specificity phosphatase, catalytic domain APY29_19610 PF12147 Putative methyltransferase APY29_19610 PF12146 Serine aminopeptidase, S33 APY29_19615 PF01066 CDP-alcohol phosphatidyltransferase APY29_19620 PF01808 AICARFT/IMPCHase bienzyme APY29_19620 PF02142 MGS-like domain APY29_19630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APY29_19630 PF02843 Phosphoribosylglycinamide synthetase, C domain APY29_19630 PF02844 Phosphoribosylglycinamide synthetase, N domain APY29_19640 PF12805 FUSC-like inner membrane protein yccS APY29_19645 PF07690 Major Facilitator Superfamily APY29_19655 PF07690 Major Facilitator Superfamily APY29_19670 PF03186 CobD/Cbib protein APY29_19670 PF17113 Regulatory signalling modulator protein AmpE APY29_19675 PF09297 NADH pyrophosphatase zinc ribbon domain APY29_19675 PF00293 NUDIX domain APY29_19675 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APY29_19690 PF01521 Iron-sulphur cluster biosynthesis APY29_19710 PF00486 Transcriptional regulatory protein, C terminal APY29_19710 PF00072 Response regulator receiver domain APY29_19715 PF00512 His Kinase A (phospho-acceptor) domain APY29_19715 PF01627 Hpt domain APY29_19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_19715 PF00072 Response regulator receiver domain APY29_19715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY29_19715 PF00672 HAMP domain APY29_19720 PF00210 Ferritin-like domain APY29_19730 PF00293 NUDIX domain APY29_19745 PF00380 Ribosomal protein S9/S16 APY29_19750 PF00572 Ribosomal protein L13 APY29_19755 PF03232 Ubiquinone biosynthesis protein COQ7 APY29_19760 PF00893 Small Multidrug Resistance protein APY29_19765 PF02675 S-adenosylmethionine decarboxylase APY29_19770 PF00027 Cyclic nucleotide-binding domain APY29_19770 PF00325 Bacterial regulatory proteins, crp family APY29_19780 PF00218 Indole-3-glycerol phosphate synthase APY29_19785 PF00591 Glycosyl transferase family, a/b domain APY29_19785 PF02885 Glycosyl transferase family, helical bundle domain APY29_19795 PF00117 Glutamine amidotransferase class-I APY29_19805 PF04715 Anthranilate synthase component I, N terminal region APY29_19805 PF00425 chorismate binding enzyme APY29_19810 PF00781 Diacylglycerol kinase catalytic domain APY29_19815 PF00583 Acetyltransferase (GNAT) family APY29_19820 PF00834 Ribulose-phosphate 3 epimerase family APY29_19830 PF05099 Tellurite resistance protein TerB APY29_19830 PF00226 DnaJ domain APY29_19835 PF01259 SAICAR synthetase APY29_19855 PF00182 Chitinase class I APY29_19860 PF07504 Fungalysin/Thermolysin Propeptide Motif APY29_19860 PF01483 Proprotein convertase P-domain APY29_19860 PF01447 Thermolysin metallopeptidase, catalytic domain APY29_19860 PF02868 Thermolysin metallopeptidase, alpha-helical domain APY29_19875 PF00361 Proton-conducting membrane transporter APY29_19875 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY29_19875 PF13244 Domain of unknown function (DUF4040) APY29_19875 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter APY29_19880 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APY29_19885 PF00361 Proton-conducting membrane transporter APY29_19895 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) APY29_19900 PF03334 Na+/H+ antiporter subunit APY29_19915 PF04209 homogentisate 1,2-dioxygenase APY29_19920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_19925 PF01047 MarR family APY29_19935 PF00854 POT family APY29_19940 PF03301 Tryptophan 2,3-dioxygenase APY29_19950 PF00676 Dehydrogenase E1 component APY29_19955 PF02779 Transketolase, pyrimidine binding domain APY29_19955 PF02780 Transketolase, C-terminal domain APY29_19965 PF00364 Biotin-requiring enzyme APY29_19965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY29_19965 PF02817 e3 binding domain APY29_19970 PF00271 Helicase conserved C-terminal domain APY29_19970 PF00270 DEAD/DEAH box helicase APY29_19985 PF00873 AcrB/AcrD/AcrF family APY29_20005 PF06903 VirK protein APY29_20025 PF13460 NAD(P)H-binding APY29_20030 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_20030 PF00128 Alpha amylase, catalytic domain APY29_20040 PF00128 Alpha amylase, catalytic domain APY29_20045 PF02446 4-alpha-glucanotransferase APY29_20050 PF00128 Alpha amylase, catalytic domain APY29_20050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_20050 PF11941 Domain of unknown function (DUF3459) APY29_20055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_20055 PF02806 Alpha amylase, C-terminal all-beta domain APY29_20055 PF00128 Alpha amylase, catalytic domain APY29_20060 PF00534 Glycosyl transferases group 1 APY29_20060 PF08323 Starch synthase catalytic domain APY29_20065 PF00990 Diguanylate cyclase, GGDEF domain APY29_20065 PF00072 Response regulator receiver domain APY29_20070 PF05661 Protein of unknown function (DUF808) APY29_20075 PF03109 ABC1 family APY29_20080 PF00884 Sulfatase APY29_20085 PF00924 Mechanosensitive ion channel APY29_20085 PF12795 Mechanosensitive ion channel porin domain APY29_20085 PF12794 Mechanosensitive ion channel inner membrane domain 1 APY29_20105 PF01464 Transglycosylase SLT domain APY29_20120 PF01311 Bacterial export proteins, family 1 APY29_20130 PF18269 T3SS EscN ATPase C-terminal domain APY29_20130 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY29_20130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_20145 PF01514 Secretory protein of YscJ/FliF family APY29_20160 PF01312 FlhB HrpN YscU SpaS Family APY29_20165 PF00771 FHIPEP family APY29_20180 PF00813 FliP family APY29_20185 PF01313 Bacterial export proteins, family 3 APY29_20230 PF01040 UbiA prenyltransferase family APY29_20240 PF04055 Radical SAM superfamily APY29_20240 PF06968 Biotin and Thiamin Synthesis associated domain APY29_20245 PF00155 Aminotransferase class I and II APY29_20255 PF12697 Alpha/beta hydrolase family APY29_20265 PF13649 Methyltransferase domain APY29_20285 PF00291 Pyridoxal-phosphate dependent enzyme APY29_20295 PF13932 GidA associated domain APY29_20295 PF01134 Glucose inhibited division protein A APY29_20300 PF10677 Protein of unknown function (DUF2490) APY29_20315 PF01614 Bacterial transcriptional regulator APY29_20315 PF09339 IclR helix-turn-helix domain APY29_20325 PF02627 Carboxymuconolactone decarboxylase family APY29_20330 PF12146 Serine aminopeptidase, S33 APY29_20335 PF00206 Lyase APY29_20335 PF10397 Adenylosuccinate lyase C-terminus APY29_20340 PF00775 Dioxygenase APY29_20340 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal APY29_20350 PF00108 Thiolase, N-terminal domain APY29_20350 PF02803 Thiolase, C-terminal domain APY29_20355 PF01144 Coenzyme A transferase APY29_20360 PF01144 Coenzyme A transferase APY29_20365 PF00355 Rieske [2Fe-2S] domain APY29_20375 PF08220 DeoR-like helix-turn-helix domain APY29_20375 PF00455 DeoR C terminal sensor domain APY29_20380 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APY29_20380 PF01266 FAD dependent oxidoreductase APY29_20385 PF00230 Major intrinsic protein APY29_20390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY29_20390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY29_20395 PF13333 Integrase core domain APY29_20395 PF13276 HTH-like domain APY29_20395 PF00665 Integrase core domain APY29_20400 PF01527 Transposase APY29_20410 PF01494 FAD binding domain APY29_20420 PF00171 Aldehyde dehydrogenase family APY29_20440 PF01966 HD domain APY29_20440 PF11871 Domain of unknown function (DUF3391) APY29_20445 PF07690 Major Facilitator Superfamily APY29_20455 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_20475 PF00920 Dehydratase family APY29_20480 PF00589 Phage integrase family APY29_20480 PF13495 Phage integrase, N-terminal SAM-like domain APY29_20490 PF13333 Integrase core domain APY29_20490 PF00665 Integrase core domain APY29_20490 PF13276 HTH-like domain APY29_20505 PF13276 HTH-like domain APY29_20505 PF00665 Integrase core domain APY29_20505 PF13333 Integrase core domain APY29_20510 PF01527 Transposase APY29_20540 PF01638 HxlR-like helix-turn-helix APY29_20545 PF05368 NmrA-like family APY29_20565 PF03812 2-keto-3-deoxygluconate permease APY29_20570 PF01717 Cobalamin-independent synthase, Catalytic domain APY29_20570 PF08267 Cobalamin-independent synthase, N-terminal domain APY29_20580 PF03358 NADPH-dependent FMN reductase APY29_20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_20585 PF03466 LysR substrate binding domain APY29_20590 PF02677 Epoxyqueuosine reductase QueH APY29_20605 PF02321 Outer membrane efflux protein APY29_20615 PF00529 HlyD membrane-fusion protein of T1SS APY29_20615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_20620 PF00512 His Kinase A (phospho-acceptor) domain APY29_20620 PF00672 HAMP domain APY29_20620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_20625 PF00072 Response regulator receiver domain APY29_20625 PF00486 Transcriptional regulatory protein, C terminal APY29_20630 PF00551 Formyl transferase APY29_20640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY29_20640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APY29_20645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APY29_20650 PF02146 Sir2 family APY29_20665 PF07690 Major Facilitator Superfamily APY29_20675 PF01527 Transposase APY29_20680 PF13683 Integrase core domain APY29_20680 PF13276 HTH-like domain APY29_20695 PF01026 TatD related DNase APY29_20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_20700 PF03466 LysR substrate binding domain APY29_20705 PF00355 Rieske [2Fe-2S] domain APY29_20710 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_20715 PF00860 Permease family APY29_20725 PF01156 Inosine-uridine preferring nucleoside hydrolase APY29_20730 PF01425 Amidase APY29_20745 PF07690 Major Facilitator Superfamily APY29_20750 PF03466 LysR substrate binding domain APY29_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_20755 PF01546 Peptidase family M20/M25/M40 APY29_20755 PF07687 Peptidase dimerisation domain APY29_20760 PF00266 Aminotransferase class-V APY29_20775 PF01014 Uricase APY29_20775 PF09349 OHCU decarboxylase APY29_20780 PF13454 FAD-NAD(P)-binding APY29_20785 PF00576 HIUase/Transthyretin family APY29_20790 PF07308 Protein of unknown function (DUF1456) APY29_20795 PF00270 DEAD/DEAH box helicase APY29_20795 PF04408 Helicase associated domain (HA2) APY29_20795 PF00271 Helicase conserved C-terminal domain APY29_20795 PF08482 ATP-dependent helicase C-terminal APY29_20805 PF00593 TonB dependent receptor APY29_20810 PF00849 RNA pseudouridylate synthase APY29_20825 PF00107 Zinc-binding dehydrogenase APY29_20825 PF16884 N-terminal domain of oxidoreductase APY29_20855 PF02566 OsmC-like protein APY29_20860 PF01047 MarR family APY29_20865 PF03969 AFG1-like ATPase APY29_20950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_20950 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_20950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_20955 PF01039 Carboxyl transferase domain APY29_20960 PF02785 Biotin carboxylase C-terminal domain APY29_20960 PF00364 Biotin-requiring enzyme APY29_20960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_20960 PF00289 Biotin carboxylase, N-terminal domain APY29_20965 PF00326 Prolyl oligopeptidase family APY29_20985 PF00990 Diguanylate cyclase, GGDEF domain APY29_20990 PF00463 Isocitrate lyase family APY29_20995 PF01274 Malate synthase APY29_21005 PF00999 Sodium/hydrogen exchanger family APY29_21030 PF12706 Beta-lactamase superfamily domain APY29_21035 PF01432 Peptidase family M3 APY29_21040 PF01112 Asparaginase APY29_21050 PF00472 RF-1 domain APY29_21060 PF00849 RNA pseudouridylate synthase APY29_21070 PF03109 ABC1 family APY29_21080 PF01820 D-ala D-ala ligase N-terminus APY29_21080 PF07478 D-ala D-ala ligase C-terminus APY29_21095 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family APY29_21100 PF00501 AMP-binding enzyme APY29_21105 PF03692 Putative zinc- or iron-chelating domain APY29_21110 PF00561 alpha/beta hydrolase fold APY29_21120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_21120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_21135 PF00588 SpoU rRNA Methylase family APY29_21140 PF07690 Major Facilitator Superfamily APY29_21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_21165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APY29_21165 PF00205 Thiamine pyrophosphate enzyme, central domain APY29_21165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APY29_21175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APY29_21175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APY29_21180 PF02556 Preprotein translocase subunit SecB APY29_21185 PF00581 Rhodanese-like domain APY29_21220 PF00108 Thiolase, N-terminal domain APY29_21220 PF02803 Thiolase, C-terminal domain APY29_21235 PF00080 Copper/zinc superoxide dismutase (SODC) APY29_21240 PF00080 Copper/zinc superoxide dismutase (SODC) APY29_21245 PF00158 Sigma-54 interaction domain APY29_21245 PF02954 Bacterial regulatory protein, Fis family APY29_21245 PF00072 Response regulator receiver domain APY29_21250 PF00512 His Kinase A (phospho-acceptor) domain APY29_21250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_21250 PF00989 PAS fold APY29_21255 PF00909 Ammonium Transporter Family APY29_21260 PF00543 Nitrogen regulatory protein P-II APY29_21265 PF00120 Glutamine synthetase, catalytic domain APY29_21265 PF03951 Glutamine synthetase, beta-Grasp domain APY29_21270 PF02673 Bacitracin resistance protein BacA APY29_21280 PF01161 Phosphatidylethanolamine-binding protein APY29_21305 PF03061 Thioesterase superfamily APY29_21310 PF13091 PLD-like domain APY29_21325 PF01883 Iron-sulfur cluster assembly protein APY29_21325 PF10609 NUBPL iron-transfer P-loop NTPase APY29_21350 PF01381 Helix-turn-helix APY29_21370 PF03781 Sulfatase-modifying factor enzyme 1 APY29_21370 PF12867 DinB superfamily APY29_21380 PF00528 Binding-protein-dependent transport system inner membrane component APY29_21385 PF00005 ABC transporter APY29_21400 PF00005 ABC transporter APY29_21410 PF01734 Patatin-like phospholipase APY29_21415 PF00593 TonB dependent receptor APY29_21415 PF07715 TonB-dependent Receptor Plug Domain APY29_21415 PF07660 Secretin and TonB N terminus short domain APY29_21420 PF01037 Lrp/AsnC ligand binding domain APY29_21425 PF00351 Biopterin-dependent aromatic amino acid hydroxylase APY29_21440 PF00657 GDSL-like Lipase/Acylhydrolase APY29_21455 PF04962 KduI/IolB family APY29_21460 PF00356 Bacterial regulatory proteins, lacI family APY29_21465 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain APY29_21465 PF04616 Glycosyl hydrolases family 43 APY29_21470 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APY29_21480 PF03480 Bacterial extracellular solute-binding protein, family 7 APY29_21490 PF07859 alpha/beta hydrolase fold APY29_21490 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_21495 PF00135 Carboxylesterase family APY29_21500 PF00248 Aldo/keto reductase family APY29_21505 PF03377 TAL effector repeat APY29_21510 PF04357 TamB, inner membrane protein subunit of TAM complex APY29_21515 PF01103 Surface antigen APY29_21515 PF17243 POTRA domain TamA domain 1 APY29_21520 PF07715 TonB-dependent Receptor Plug Domain APY29_21520 PF00593 TonB dependent receptor APY29_21525 PF13181 Tetratricopeptide repeat APY29_21530 PF05746 DALR anticodon binding domain APY29_21530 PF02092 Glycyl-tRNA synthetase beta subunit APY29_21535 PF02091 Glycyl-tRNA synthetase alpha subunit APY29_21540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_21540 PF00437 Type II/IV secretion system protein APY29_21550 PF00117 Glutamine amidotransferase class-I APY29_21550 PF00958 GMP synthase C terminal domain APY29_21560 PF00902 Sec-independent protein translocase protein (TatC) APY29_21565 PF02416 mttA/Hcf106 family APY29_21570 PF02416 mttA/Hcf106 family APY29_21580 PF00762 Ferrochelatase APY29_21585 PF12697 Alpha/beta hydrolase family APY29_21600 PF04381 Putative exonuclease, RdgC APY29_21605 PF01171 PP-loop family APY29_21615 PF00356 Bacterial regulatory proteins, lacI family APY29_21620 PF03648 Glycosyl hydrolase family 67 N-terminus APY29_21620 PF07477 Glycosyl hydrolase family 67 C-terminus APY29_21620 PF07488 Glycosyl hydrolase family 67 middle domain APY29_21630 PF13378 Enolase C-terminal domain-like APY29_21630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_21635 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain APY29_21635 PF04616 Glycosyl hydrolases family 43 APY29_21645 PF01232 Mannitol dehydrogenase Rossmann domain APY29_21645 PF08125 Mannitol dehydrogenase C-terminal domain APY29_21685 PF00202 Aminotransferase class-III APY29_21695 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY29_21695 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY29_21710 PF08450 SMP-30/Gluconolactonase/LRE-like region APY29_21715 PF00331 Glycosyl hydrolase family 10 APY29_21720 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 APY29_21720 PF16355 Domain of unknown function (DUF4982) APY29_21720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_21720 PF00703 Glycosyl hydrolases family 2 APY29_21720 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_21725 PF02614 Glucuronate isomerase APY29_21740 PF00331 Glycosyl hydrolase family 10 APY29_21740 PF03422 Carbohydrate binding module (family 6) APY29_21740 PF00553 Cellulose binding domain APY29_21760 PF04616 Glycosyl hydrolases family 43 APY29_21785 PF01527 Transposase APY29_21790 PF13683 Integrase core domain APY29_21790 PF13276 HTH-like domain APY29_21825 PF14765 Polyketide synthase dehydratase APY29_21825 PF00550 Phosphopantetheine attachment site APY29_21825 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_21825 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_21825 PF00107 Zinc-binding dehydrogenase APY29_21825 PF08240 Alcohol dehydrogenase GroES-like domain APY29_21825 PF00698 Acyl transferase domain APY29_21825 PF16197 Ketoacyl-synthetase C-terminal extension APY29_21825 PF08659 KR domain APY29_21830 PF01553 Acyltransferase APY29_21840 PF00356 Bacterial regulatory proteins, lacI family APY29_21860 PF04820 Tryptophan halogenase APY29_21865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APY29_21870 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) APY29_21875 PF04337 Protein of unknown function, DUF480 APY29_21885 PF13302 Acetyltransferase (GNAT) domain APY29_21890 PF00580 UvrD/REP helicase N-terminal domain APY29_21890 PF13361 UvrD-like helicase C-terminal domain APY29_21895 PF00265 Thymidine kinase APY29_21900 PF00360 Phytochrome region APY29_21900 PF08446 PAS fold APY29_21900 PF00512 His Kinase A (phospho-acceptor) domain APY29_21900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_21900 PF01590 GAF domain APY29_21905 PF04349 Periplasmic glucan biosynthesis protein, MdoG APY29_21915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APY29_21915 PF06827 Zinc finger found in FPG and IleRS APY29_21915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APY29_21945 PF03594 Benzoate membrane transport protein APY29_21950 PF01590 GAF domain APY29_21950 PF13426 PAS domain APY29_21950 PF00360 Phytochrome region APY29_21950 PF08446 PAS fold APY29_21955 PF01126 Heme oxygenase APY29_21960 PF07690 Major Facilitator Superfamily APY29_21965 PF01263 Aldose 1-epimerase APY29_21975 PF02810 SEC-C motif APY29_21980 PF01925 Sulfite exporter TauE/SafE APY29_22000 PF01227 GTP cyclohydrolase I APY29_22010 PF07869 Protein of unknown function (DUF1656) APY29_22015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY29_22015 PF00529 HlyD membrane-fusion protein of T1SS APY29_22020 PF02321 Outer membrane efflux protein APY29_22025 PF04632 Fusaric acid resistance protein family APY29_22030 PF00083 Sugar (and other) transporter APY29_22035 PF13091 PLD-like domain APY29_22035 PF13396 Phospholipase_D-nuclease N-terminal APY29_22070 PF01850 PIN domain APY29_22075 PF13276 HTH-like domain APY29_22075 PF00665 Integrase core domain APY29_22075 PF13333 Integrase core domain APY29_22080 PF01527 Transposase APY29_22105 PF00849 RNA pseudouridylate synthase APY29_22115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_22115 PF00289 Biotin carboxylase, N-terminal domain APY29_22115 PF02785 Biotin carboxylase C-terminal domain APY29_22120 PF01425 Amidase APY29_22145 PF13538 UvrD-like helicase C-terminal domain APY29_22150 PF13361 UvrD-like helicase C-terminal domain APY29_22150 PF00580 UvrD/REP helicase N-terminal domain APY29_22150 PF12705 PD-(D/E)XK nuclease superfamily APY29_22155 PF17946 RecC C-terminal domain APY29_22170 PF00005 ABC transporter APY29_22175 PF02405 Permease MlaE APY29_22180 PF02470 MlaD protein APY29_22185 PF05494 MlaC protein APY29_22195 PF04333 MlaA lipoprotein APY29_22205 PF00255 Glutathione peroxidase APY29_22215 PF02646 RmuC family APY29_22220 PF08240 Alcohol dehydrogenase GroES-like domain APY29_22220 PF00107 Zinc-binding dehydrogenase APY29_22225 PF03466 LysR substrate binding domain APY29_22225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_22235 PF13417 Glutathione S-transferase, N-terminal domain APY29_22235 PF00043 Glutathione S-transferase, C-terminal domain APY29_22245 PF13520 Amino acid permease APY29_22250 PF07971 Glycosyl hydrolase family 92 APY29_22250 PF17678 Glycosyl hydrolase family 92 N-terminal domain APY29_22255 PF10947 Protein of unknown function (DUF2628) APY29_22260 PF00990 Diguanylate cyclase, GGDEF domain APY29_22280 PF17785 PUA-like domain APY29_22280 PF10672 S-adenosylmethionine-dependent methyltransferase APY29_22285 PF03741 Integral membrane protein TerC family APY29_22290 PF01694 Rhomboid family APY29_22295 PF03009 Glycerophosphoryl diester phosphodiesterase family APY29_22305 PF01569 PAP2 superfamily APY29_22310 PF01926 50S ribosome-binding GTPase APY29_22310 PF12631 MnmE helical domain APY29_22310 PF10396 GTP-binding protein TrmE N-terminus APY29_22315 PF01522 Polysaccharide deacetylase APY29_22325 PF14849 YidC periplasmic domain APY29_22325 PF02096 60Kd inner membrane protein APY29_22330 PF00825 Ribonuclease P APY29_22335 PF00468 Ribosomal protein L34 APY29_22345 PF13700 Domain of unknown function (DUF4158) APY29_22345 PF01526 Tn3 transposase DDE domain APY29_22365 PF05598 Transposase domain (DUF772) APY29_22390 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APY29_22395 PF03377 TAL effector repeat APY29_22400 PF03377 TAL effector repeat APY29_22405 PF13406 Transglycosylase SLT domain APY29_22425 PF00239 Resolvase, N terminal domain APY29_22425 PF02796 Helix-turn-helix domain of resolvase APY29_22440 PF01526 Tn3 transposase DDE domain APY29_22440 PF13700 Domain of unknown function (DUF4158) APY29_22445 PF07015 VirC1 protein APY29_22475 PF01527 Transposase APY29_22480 PF13333 Integrase core domain APY29_22480 PF13276 HTH-like domain APY29_22480 PF00665 Integrase core domain APY29_22485 PF03377 TAL effector repeat APY29_22495 PF13614 AAA domain APY29_22495 PF00376 MerR family regulatory protein APY29_22515 PF00239 Resolvase, N terminal domain APY29_22515 PF02796 Helix-turn-helix domain of resolvase APY29_22520 PF03377 TAL effector repeat APY29_22555 PF13333 Integrase core domain APY29_22555 PF00665 Integrase core domain APY29_22555 PF13276 HTH-like domain APY29_22560 PF01527 Transposase APY29_22565 PF03377 TAL effector repeat APY29_22590 PF13614 AAA domain APY29_22650 PF13333 Integrase core domain APY29_22650 PF13276 HTH-like domain APY29_22650 PF00665 Integrase core domain APY29_22655 PF03377 TAL effector repeat APY29_22660 PF13333 Integrase core domain APY29_22660 PF13276 HTH-like domain APY29_22660 PF00665 Integrase core domain APY29_22665 PF01527 Transposase APY29_22685 PF18272 single-stranded DNA binding TraI N-terminal subdomain APY29_22685 PF08751 TrwC relaxase APY29_22685 PF07057 DNA helicase TraI APY29_22685 PF18340 DNA relaxase TraI 2B/2B-like domain APY29_22685 PF18340 DNA relaxase TraI 2B/2B-like domain APY29_22685 PF08751 TrwC relaxase APY29_22685 PF18272 single-stranded DNA binding TraI N-terminal subdomain APY29_22685 PF07057 DNA helicase TraI APY29_22700 PF13333 Integrase core domain APY29_22700 PF00665 Integrase core domain APY29_22700 PF13276 HTH-like domain APY29_22715 PF13614 AAA domain