APY29_00285	PWY-6655	xanthan biosynthesis
APY29_00285	PWY-6658	acetan biosynthesis
APY29_00530	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_00530	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_00530	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_00530	PWY-6113	superpathway of mycolate biosynthesis
APY29_00530	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_00530	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_00530	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_00530	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_00530	PWY-7858	APY29_00530
APY29_00530	PWYG-321	mycolate biosynthesis
APY29_00640	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_00640	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APY29_00640	PWY-6638	sulfolactate degradation III
APY29_00640	PWY-6642	(<i>R</i>)-cysteate degradation
APY29_00640	PWY-6643	coenzyme M biosynthesis II
APY29_00640	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_00640	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_00640	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_00645	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_00775	PWY-7900	APY29_00775
APY29_00780	PWY-2622	trehalose biosynthesis IV
APY29_00780	PWY-7900	APY29_00780
APY29_00785	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_00785	PWY-622	starch biosynthesis
APY29_00785	PWY-7900	APY29_00785
APY29_00985	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_00985	PWY-6416	quinate degradation II
APY29_00985	PWY-6707	gallate biosynthesis
APY29_01000	PWY-5530	sorbitol biosynthesis II
APY29_01115	PWY-5108	L-isoleucine biosynthesis V
APY29_01115	PWY-5132	humulone biosynthesis
APY29_01115	PWY-5133	cohumulone biosynthesis
APY29_01115	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APY29_01115	PWY-7118	chitin degradation to ethanol
APY29_01115	PWY-7857	APY29_01115
APY29_01160	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_01175	PWY-6012	acyl carrier protein metabolism I
APY29_01175	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APY29_01175	PWY-6289	petrobactin biosynthesis
APY29_01245	PWY-7701	APY29_01245
APY29_01485	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APY29_01535	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_01535	PWY-5981	CDP-diacylglycerol biosynthesis III
APY29_01535	PWY-6453	stigma estolide biosynthesis
APY29_01535	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APY29_01535	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
APY29_01535	PWY-7587	oleate biosynthesis III (cyanobacteria)
APY29_01535	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
APY29_01535	PWY-7782	APY29_01535
APY29_01540	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_01540	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_01540	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_01540	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_01540	PWY-6113	superpathway of mycolate biosynthesis
APY29_01540	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_01540	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_01540	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_01540	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_01540	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_01540	PWY-7858	APY29_01540
APY29_01540	PWYG-321	mycolate biosynthesis
APY29_01630	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_01640	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_01640	PWY-5743	3-hydroxypropanoate cycle
APY29_01640	PWY-5744	glyoxylate assimilation
APY29_01640	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_01640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_01640	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_01640	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_01650	PWY-5392	reductive TCA cycle II
APY29_01650	PWY-5537	pyruvate fermentation to acetate V
APY29_01650	PWY-5538	pyruvate fermentation to acetate VI
APY29_01650	PWY-5690	TCA cycle II (plants and fungi)
APY29_01650	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_01650	PWY-6728	methylaspartate cycle
APY29_01650	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_01650	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_01660	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_01660	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_01660	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_01660	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_01660	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_01660	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_01660	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_01660	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APY29_01665	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_01665	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_01665	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_01665	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_01665	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_01665	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_01665	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_01665	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APY29_01695	PWY-6654	phosphopantothenate biosynthesis III
APY29_01855	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_01855	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APY29_01885	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_01960	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APY29_01960	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APY29_01965	PWY-3961	phosphopantothenate biosynthesis II
APY29_02000	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_02000	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_02000	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_02000	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APY29_02000	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_02000	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_02025	PWY-31	canavanine degradation
APY29_02025	PWY-4984	urea cycle
APY29_02025	PWY-6305	putrescine biosynthesis IV
APY29_02025	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APY29_02300	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
APY29_02330	PWY-40	putrescine biosynthesis I
APY29_02330	PWY-43	putrescine biosynthesis II
APY29_02330	PWY-6305	putrescine biosynthesis IV
APY29_02330	PWY-6834	spermidine biosynthesis III
APY29_02345	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_02345	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_02345	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_02345	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_02380	PWY-7851	APY29_02380
APY29_02435	PWY-5686	UMP biosynthesis
APY29_02435	PWY-7790	APY29_02435
APY29_02435	PWY-7791	APY29_02435
APY29_02455	PWY-7883	APY29_02455
APY29_02500	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APY29_02500	PWY-6853	ethylene biosynthesis II (microbes)
APY29_02500	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APY29_02515	PWY-3781	aerobic respiration I (cytochrome c)
APY29_02515	PWY-4521	arsenite oxidation I (respiratory)
APY29_02515	PWY-6692	Fe(II) oxidation
APY29_02515	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_02590	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_02590	PWY-6148	tetrahydromethanopterin biosynthesis
APY29_02590	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APY29_02590	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_02645	PWY-6454	vancomycin resistance I
APY29_02645	PWY-6455	vancomycin resistance II
APY29_02710	PWY-6700	queuosine biosynthesis
APY29_02725	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_02725	PWY-6549	L-glutamine biosynthesis III
APY29_02725	PWY-6728	methylaspartate cycle
APY29_02725	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_02725	PWY-7124	ethylene biosynthesis V (engineered)
APY29_02725	PWY-7254	TCA cycle VII (acetate-producers)
APY29_02725	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_02750	PWY-7980	APY29_02750
APY29_02945	PWY-6168	flavin biosynthesis III (fungi)
APY29_02945	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_02945	PWY-7991	APY29_02945
APY29_03050	PWY-7799	APY29_03050
APY29_03050	PWY-7800	APY29_03050
APY29_03205	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APY29_03205	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APY29_03205	PWY-7622	UDP-galactofuranose biosynthesis
APY29_03215	PWY-3821	galactose degradation III
APY29_03215	PWY-6317	galactose degradation I (Leloir pathway)
APY29_03215	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APY29_03215	PWY-6527	stachyose degradation
APY29_03215	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APY29_03215	PWY-7344	UDP-D-galactose biosynthesis
APY29_03470	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_03630	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APY29_03630	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_03670	PWY-7980	APY29_03670
APY29_03680	PWY-7980	APY29_03680
APY29_03690	PWY-3461	L-tyrosine biosynthesis II
APY29_03690	PWY-3462	L-phenylalanine biosynthesis II
APY29_03690	PWY-6120	L-tyrosine biosynthesis III
APY29_03690	PWY-6627	salinosporamide A biosynthesis
APY29_03690	PWY-7626	bacilysin biosynthesis
APY29_03700	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_03740	PWY-6749	CMP-legionaminate biosynthesis I
APY29_03775	PWY-5386	methylglyoxal degradation I
APY29_03815	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_03815	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_03815	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_03815	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_03815	PWY-6113	superpathway of mycolate biosynthesis
APY29_03815	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_03815	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_03815	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_03815	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_03815	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_03815	PWY-7858	APY29_03815
APY29_03815	PWYG-321	mycolate biosynthesis
APY29_03825	PWY-181	photorespiration
APY29_03850	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APY29_03950	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
APY29_03950	PWY-5739	GDP-D-perosamine biosynthesis
APY29_03950	PWY-5740	GDP-L-colitose biosynthesis
APY29_03950	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APY29_03950	PWY-7573	GDP-mycosamine biosynthesis
APY29_04025	PWY-3221	dTDP-L-rhamnose biosynthesis II
APY29_04025	PWY-6808	dTDP-D-forosamine biosynthesis
APY29_04025	PWY-6942	dTDP-D-desosamine biosynthesis
APY29_04025	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APY29_04025	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APY29_04025	PWY-6974	dTDP-L-olivose biosynthesis
APY29_04025	PWY-6976	dTDP-L-mycarose biosynthesis
APY29_04025	PWY-7104	dTDP-L-megosamine biosynthesis
APY29_04025	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APY29_04025	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APY29_04025	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APY29_04025	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APY29_04025	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APY29_04025	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APY29_04025	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APY29_04025	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APY29_04025	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APY29_04025	PWY-7688	APY29_04025
APY29_04025	PWY-7814	APY29_04025
APY29_04030	PWY-3221	dTDP-L-rhamnose biosynthesis II
APY29_04030	PWY-6808	dTDP-D-forosamine biosynthesis
APY29_04030	PWY-6942	dTDP-D-desosamine biosynthesis
APY29_04030	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APY29_04030	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APY29_04030	PWY-6974	dTDP-L-olivose biosynthesis
APY29_04030	PWY-6976	dTDP-L-mycarose biosynthesis
APY29_04030	PWY-7104	dTDP-L-megosamine biosynthesis
APY29_04030	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APY29_04030	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APY29_04030	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APY29_04030	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APY29_04030	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APY29_04030	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APY29_04030	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APY29_04030	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APY29_04030	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APY29_04030	PWY-7688	APY29_04030
APY29_04030	PWY-7814	APY29_04030
APY29_04045	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APY29_04045	PWY-7820	APY29_04045
APY29_04050	PWY-5659	GDP-mannose biosynthesis
APY29_04050	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APY29_04055	PWY-6749	CMP-legionaminate biosynthesis I
APY29_04120	PWY-5669	phosphatidylethanolamine biosynthesis I
APY29_04200	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_04200	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_04200	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_04345	PWY-5381	pyridine nucleotide cycling (plants)
APY29_04360	PWY-1001	cellulose biosynthesis
APY29_04370	PWY-6788	cellulose degradation II (fungi)
APY29_04395	PWY-4202	arsenate detoxification I (glutaredoxin)
APY29_04395	PWY-4621	arsenate detoxification II (glutaredoxin)
APY29_04415	PWY-6769	rhamnogalacturonan type I degradation I (fungi)
APY29_04415	PWY-6771	rhamnogalacturonan type I degradation II (bacteria)
APY29_04570	PWY-5676	acetyl-CoA fermentation to butanoate II
APY29_04570	PWY-5741	ethylmalonyl-CoA pathway
APY29_04570	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_04570	PWY-7948	APY29_04570
APY29_04660	PWY-1281	sulfoacetaldehyde degradation I
APY29_04660	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_04660	PWY-5482	pyruvate fermentation to acetate II
APY29_04660	PWY-5485	pyruvate fermentation to acetate IV
APY29_04660	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_04660	PWY-6637	sulfolactate degradation II
APY29_04660	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_04690	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APY29_04730	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APY29_04735	PWY-6871	3-methylbutanol biosynthesis
APY29_04750	PWY-5101	L-isoleucine biosynthesis II
APY29_04750	PWY-5103	L-isoleucine biosynthesis III
APY29_04750	PWY-5104	L-isoleucine biosynthesis IV
APY29_04750	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APY29_04750	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APY29_04750	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APY29_04750	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_04755	PWY-5103	L-isoleucine biosynthesis III
APY29_04755	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_04760	PWY-4041	&gamma;-glutamyl cycle
APY29_04760	PWY-4061	glutathione-mediated detoxification I
APY29_04760	PWY-5826	hypoglycin biosynthesis
APY29_04760	PWY-6842	glutathione-mediated detoxification II
APY29_04760	PWY-7112	4-hydroxy-2-nonenal detoxification
APY29_04760	PWY-7559	glutathione degradation (DUG pathway - yeast)
APY29_04775	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
APY29_04800	PWY-7805	APY29_04800
APY29_04800	PWY-7807	APY29_04800
APY29_04810	PWY-7805	APY29_04810
APY29_04810	PWY-7807	APY29_04810
APY29_04830	PWY-1042	glycolysis IV (plant cytosol)
APY29_04830	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_04830	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_04830	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_04835	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_04840	PWY-7883	APY29_04840
APY29_04920	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_04930	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APY29_04930	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APY29_04930	PWY-6897	thiamin salvage II
APY29_04930	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APY29_04930	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APY29_04930	PWY-7356	thiamin salvage IV (yeast)
APY29_04930	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APY29_04950	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_04950	PWY-5723	Rubisco shunt
APY29_04980	PWY-7799	APY29_04980
APY29_04980	PWY-7800	APY29_04980
APY29_05030	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_05075	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_05075	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_05075	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_05075	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_05140	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_05140	PWY-5723	Rubisco shunt
APY29_05140	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_05140	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_05140	PWY-6901	superpathway of glucose and xylose degradation
APY29_05140	PWY-7560	methylerythritol phosphate pathway II
APY29_05250	PWY-2582	brassinosteroid biosynthesis II
APY29_05250	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_05250	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_05250	PWY-6948	sitosterol degradation to androstenedione
APY29_05250	PWY-699	brassinosteroid biosynthesis I
APY29_05250	PWY-7299	progesterone biosynthesis
APY29_05255	PWY-1042	glycolysis IV (plant cytosol)
APY29_05255	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_05255	PWY-6901	superpathway of glucose and xylose degradation
APY29_05255	PWY-7003	glycerol degradation to butanol
APY29_05275	PWY-1042	glycolysis IV (plant cytosol)
APY29_05275	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_05275	PWY-6886	1-butanol autotrophic biosynthesis
APY29_05275	PWY-6901	superpathway of glucose and xylose degradation
APY29_05275	PWY-7003	glycerol degradation to butanol
APY29_05285	PWY-1042	glycolysis IV (plant cytosol)
APY29_05285	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_05285	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_05285	PWY-5723	Rubisco shunt
APY29_05285	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_05285	PWY-6886	1-butanol autotrophic biosynthesis
APY29_05285	PWY-6901	superpathway of glucose and xylose degradation
APY29_05285	PWY-7003	glycerol degradation to butanol
APY29_05285	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_05285	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_05290	PWY-1042	glycolysis IV (plant cytosol)
APY29_05290	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_05290	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_05290	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_05290	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_05300	PWY-6825	phosphatidylcholine biosynthesis V
APY29_05305	PWY-6936	seleno-amino acid biosynthesis
APY29_05310	PWY-5194	siroheme biosynthesis
APY29_05310	PWY-5196	factor 430 biosynthesis
APY29_05310	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APY29_05355	PWY-6683	sulfate reduction III (assimilatory)
APY29_05360	PWY-6683	sulfate reduction III (assimilatory)
APY29_05365	PWY-5278	sulfite oxidation III
APY29_05365	PWY-5340	sulfate activation for sulfonation
APY29_05365	PWY-6683	sulfate reduction III (assimilatory)
APY29_05365	PWY-6932	selenate reduction
APY29_05370	PWY-5278	sulfite oxidation III
APY29_05370	PWY-5340	sulfate activation for sulfonation
APY29_05370	PWY-6683	sulfate reduction III (assimilatory)
APY29_05370	PWY-6932	selenate reduction
APY29_05440	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_05495	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_05495	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_05625	PWY-7851	APY29_05625
APY29_05670	PWY-5392	reductive TCA cycle II
APY29_05670	PWY-5537	pyruvate fermentation to acetate V
APY29_05670	PWY-5538	pyruvate fermentation to acetate VI
APY29_05670	PWY-5690	TCA cycle II (plants and fungi)
APY29_05670	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_05670	PWY-6728	methylaspartate cycle
APY29_05670	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_05670	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_05675	PWY-5392	reductive TCA cycle II
APY29_05675	PWY-5537	pyruvate fermentation to acetate V
APY29_05675	PWY-5538	pyruvate fermentation to acetate VI
APY29_05675	PWY-5690	TCA cycle II (plants and fungi)
APY29_05675	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_05675	PWY-6728	methylaspartate cycle
APY29_05675	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_05675	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_05690	PWY-5381	pyridine nucleotide cycling (plants)
APY29_05690	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APY29_05690	PWY-7761	APY29_05690
APY29_05860	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_05860	PWY-7962	APY29_05860
APY29_05860	PWY-7971	APY29_05860
APY29_05860	PWY-7972	APY29_05860
APY29_05865	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_05865	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_05865	PWY-7964	APY29_05865
APY29_05865	PWY-7965	APY29_05865
APY29_05865	PWY-7966	APY29_05865
APY29_05865	PWY-7967	APY29_05865
APY29_05865	PWY-7968	APY29_05865
APY29_05865	PWY-7969	APY29_05865
APY29_05865	PWY-7970	APY29_05865
APY29_05875	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APY29_05875	PWY-6269	adenosylcobalamin salvage from cobinamide II
APY29_05875	PWY-7961	APY29_05875
APY29_05875	PWY-7963	APY29_05875
APY29_05875	PWY-7964	APY29_05875
APY29_05875	PWY-7965	APY29_05875
APY29_05875	PWY-7966	APY29_05875
APY29_05875	PWY-7967	APY29_05875
APY29_05875	PWY-7968	APY29_05875
APY29_05875	PWY-7969	APY29_05875
APY29_05875	PWY-7970	APY29_05875
APY29_05875	PWY-7975	APY29_05875
APY29_06095	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_06105	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_06185	PWY-2722	trehalose degradation IV
APY29_06185	PWY-2723	trehalose degradation V
APY29_06185	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_06185	PWY-5661	GDP-glucose biosynthesis
APY29_06185	PWY-621	sucrose degradation III (sucrose invertase)
APY29_06185	PWY-7238	sucrose biosynthesis II
APY29_06185	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_06210	PWY-6420	pyrroloquinoline quinone biosynthesis
APY29_06235	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_06235	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_06235	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_06235	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_06350	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_06410	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_06415	PWY-6902	chitin degradation II
APY29_06415	PWY-7822	APY29_06415
APY29_06415	PWY-7883	APY29_06415
APY29_06425	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_06440	PWY-2722	trehalose degradation IV
APY29_06440	PWY-2723	trehalose degradation V
APY29_06440	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_06440	PWY-5661	GDP-glucose biosynthesis
APY29_06440	PWY-621	sucrose degradation III (sucrose invertase)
APY29_06440	PWY-7238	sucrose biosynthesis II
APY29_06440	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_06515	PWY-7094	fatty acid salvage
APY29_06515	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
APY29_06585	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_06585	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_06585	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_06585	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_06625	PWY-801	L-homocysteine and L-cysteine interconversion
APY29_06690	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APY29_06690	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APY29_06690	PWY-7766	APY29_06690
APY29_06700	PWY-6164	3-dehydroquinate biosynthesis I
APY29_06705	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_06710	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APY29_06710	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APY29_06880	PWY-7533	gliotoxin biosynthesis
APY29_06960	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_06960	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APY29_06975	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_06975	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_06975	PWY-7953	APY29_06975
APY29_06995	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_06995	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APY29_07010	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_07010	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_07010	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_07115	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APY29_07175	PWY-3341	L-proline biosynthesis III
APY29_07175	PWY-4981	L-proline biosynthesis II (from arginine)
APY29_07175	PWY-6344	L-ornithine degradation II (Stickland reaction)
APY29_07180	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_07225	PWY-5686	UMP biosynthesis
APY29_07225	PWY-7790	APY29_07225
APY29_07225	PWY-7791	APY29_07225
APY29_07250	PWY-2941	L-lysine biosynthesis II
APY29_07250	PWY-2942	L-lysine biosynthesis III
APY29_07250	PWY-5097	L-lysine biosynthesis VI
APY29_07250	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APY29_07250	PWY-6559	spermidine biosynthesis II
APY29_07250	PWY-6562	norspermidine biosynthesis
APY29_07250	PWY-7153	grixazone biosynthesis
APY29_07250	PWY-7977	APY29_07250
APY29_07265	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_07265	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_07395	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_07395	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_07530	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_07905	PWY-5381	pyridine nucleotide cycling (plants)
APY29_07905	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APY29_07905	PWY-7761	APY29_07905
APY29_08015	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APY29_08015	PWY-5491	diethylphosphate degradation
APY29_08225	PWY-5669	phosphatidylethanolamine biosynthesis I
APY29_08240	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_08250	PWY-2941	L-lysine biosynthesis II
APY29_08250	PWY-2942	L-lysine biosynthesis III
APY29_08250	PWY-5097	L-lysine biosynthesis VI
APY29_08250	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_08250	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APY29_08250	PWY-6559	spermidine biosynthesis II
APY29_08250	PWY-6562	norspermidine biosynthesis
APY29_08250	PWY-7153	grixazone biosynthesis
APY29_08250	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_08250	PWY-7977	APY29_08250
APY29_08300	PWY-4381	fatty acid biosynthesis initiation I
APY29_08300	PWY-5743	3-hydroxypropanoate cycle
APY29_08300	PWY-5744	glyoxylate assimilation
APY29_08300	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_08300	PWY-6722	candicidin biosynthesis
APY29_08305	PWY-6749	CMP-legionaminate biosynthesis I
APY29_08345	PWY-1042	glycolysis IV (plant cytosol)
APY29_08345	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_08345	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_08345	PWY-7003	glycerol degradation to butanol
APY29_08475	PWY-5316	nicotine biosynthesis
APY29_08475	PWY-5381	pyridine nucleotide cycling (plants)
APY29_08475	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APY29_08475	PWY-7342	superpathway of nicotine biosynthesis
APY29_08485	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_08485	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_08495	PWY-6854	ethylene biosynthesis III (microbes)
APY29_08520	PWY-6617	adenosine nucleotides degradation III
APY29_08520	PWY-7569	arginomycin biosynthesis
APY29_08520	PWY-7570	blasticidin S biosynthesis
APY29_08680	PWY-5941	glycogen degradation II (eukaryotic)
APY29_08680	PWY-6724	starch degradation II
APY29_08680	PWY-6737	starch degradation V
APY29_08680	PWY-7238	sucrose biosynthesis II
APY29_08755	PWY-6655	xanthan biosynthesis
APY29_08755	PWY-6658	acetan biosynthesis
APY29_08815	PWY-4381	fatty acid biosynthesis initiation I
APY29_08830	PWY-5129	sphingolipid biosynthesis (plants)
APY29_08830	PWY-7836	APY29_08830
APY29_08830	PWY-7838	APY29_08830
APY29_08830	PWY-7839	APY29_08830
APY29_08830	PWY-7841	APY29_08830
APY29_08840	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_08840	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_08840	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_08840	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_08845	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_08845	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_08845	PWY-7560	methylerythritol phosphate pathway II
APY29_09065	PWY-7851	APY29_09065
APY29_09080	PWY-4041	&gamma;-glutamyl cycle
APY29_09080	PWY-4061	glutathione-mediated detoxification I
APY29_09080	PWY-5826	hypoglycin biosynthesis
APY29_09080	PWY-6842	glutathione-mediated detoxification II
APY29_09080	PWY-7112	4-hydroxy-2-nonenal detoxification
APY29_09080	PWY-7559	glutathione degradation (DUG pathway - yeast)
APY29_09090	PWY-6788	cellulose degradation II (fungi)
APY29_09095	PWY-7183	pyrimidine nucleobases salvage I
APY29_09105	PWY-4702	phytate degradation I
APY29_09145	PWY-6700	queuosine biosynthesis
APY29_09150	PWY-6700	queuosine biosynthesis
APY29_09255	PWY-5022	4-aminobutanoate degradation V
APY29_09255	PWY-6728	methylaspartate cycle
APY29_09255	PWY-7126	ethylene biosynthesis IV
APY29_09335	PWY-381	nitrate reduction II (assimilatory)
APY29_09335	PWY-5675	nitrate reduction V (assimilatory)
APY29_09335	PWY-6549	L-glutamine biosynthesis III
APY29_09335	PWY-6963	ammonia assimilation cycle I
APY29_09335	PWY-6964	ammonia assimilation cycle II
APY29_09345	PWY-381	nitrate reduction II (assimilatory)
APY29_09345	PWY-5675	nitrate reduction V (assimilatory)
APY29_09345	PWY-6549	L-glutamine biosynthesis III
APY29_09345	PWY-6963	ammonia assimilation cycle I
APY29_09345	PWY-6964	ammonia assimilation cycle II
APY29_09455	PWY-3781	aerobic respiration I (cytochrome c)
APY29_09455	PWY-6692	Fe(II) oxidation
APY29_09455	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
APY29_09455	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_09595	PWY-6700	queuosine biosynthesis
APY29_09600	PWY-6938	NADH repair
APY29_09635	PWY-5676	acetyl-CoA fermentation to butanoate II
APY29_09635	PWY-5741	ethylmalonyl-CoA pathway
APY29_09635	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_09635	PWY-7948	APY29_09635
APY29_09685	PWY-6605	adenine and adenosine salvage II
APY29_09685	PWY-6610	adenine and adenosine salvage IV
APY29_09685	PWY-7805	APY29_09685
APY29_09685	PWY-7807	APY29_09685
APY29_09710	PWY-6854	ethylene biosynthesis III (microbes)
APY29_09715	PWY-2301	<i>myo</i>-inositol biosynthesis
APY29_09715	PWY-4702	phytate degradation I
APY29_09715	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APY29_09755	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APY29_09755	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APY29_09755	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APY29_09755	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APY29_09755	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
APY29_09755	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
APY29_09755	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
APY29_09755	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APY29_09755	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APY29_09755	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
APY29_09760	PWY-181	photorespiration
APY29_09840	PWY-5686	UMP biosynthesis
APY29_09840	PWY-7790	APY29_09840
APY29_09840	PWY-7791	APY29_09840
APY29_09880	PWY-5686	UMP biosynthesis
APY29_09880	PWY-7790	APY29_09880
APY29_09880	PWY-7791	APY29_09880
APY29_09885	PWY-4983	L-citrulline-nitric oxide cycle
APY29_09885	PWY-4984	urea cycle
APY29_09885	PWY-5	canavanine biosynthesis
APY29_09885	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_09885	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_09900	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_09900	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_09910	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_09910	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_09915	PWY-4983	L-citrulline-nitric oxide cycle
APY29_09915	PWY-4984	urea cycle
APY29_09915	PWY-5	canavanine biosynthesis
APY29_09915	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_09915	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_09930	PWY-3341	L-proline biosynthesis III
APY29_09930	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APY29_10035	PWY-7942	APY29_10035
APY29_10100	PWY-5941	glycogen degradation II (eukaryotic)
APY29_10100	PWY-6724	starch degradation II
APY29_10100	PWY-6737	starch degradation V
APY29_10100	PWY-7238	sucrose biosynthesis II
APY29_10125	PWY-43	putrescine biosynthesis II
APY29_10140	PWY-7205	CMP phosphorylation
APY29_10165	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_10165	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_10165	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_10165	PWY-6938	NADH repair
APY29_10175	PWY-3801	sucrose degradation II (sucrose synthase)
APY29_10175	PWY-6527	stachyose degradation
APY29_10175	PWY-7238	sucrose biosynthesis II
APY29_10175	PWY-7343	UDP-glucose biosynthesis
APY29_10175	PWY-7817	APY29_10175
APY29_10190	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APY29_10190	PWY-2201	folate transformations I
APY29_10190	PWY-3841	folate transformations II
APY29_10190	PWY-5030	L-histidine degradation III
APY29_10190	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_10190	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APY29_10190	PWY-7909	APY29_10190
APY29_10195	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APY29_10195	PWY-6596	adenosine nucleotides degradation I
APY29_10195	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_10200	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_10445	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_10445	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_10460	PWY-6502	oxidized GTP and dGTP detoxification
APY29_10590	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_10590	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_10590	PWY-7242	D-fructuronate degradation
APY29_10590	PWY-7310	D-glucosaminate degradation
APY29_10590	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APY29_10595	PWY-5101	L-isoleucine biosynthesis II
APY29_10595	PWY-5103	L-isoleucine biosynthesis III
APY29_10595	PWY-5104	L-isoleucine biosynthesis IV
APY29_10595	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_10600	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_10600	PWY-6855	chitin degradation I (archaea)
APY29_10600	PWY-6906	chitin derivatives degradation
APY29_10605	PWY-2722	trehalose degradation IV
APY29_10605	PWY-2723	trehalose degradation V
APY29_10605	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_10605	PWY-5661	GDP-glucose biosynthesis
APY29_10605	PWY-621	sucrose degradation III (sucrose invertase)
APY29_10605	PWY-7238	sucrose biosynthesis II
APY29_10605	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_10610	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_10635	PWY-3781	aerobic respiration I (cytochrome c)
APY29_10635	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APY29_10635	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_10635	PWY-5690	TCA cycle II (plants and fungi)
APY29_10635	PWY-6728	methylaspartate cycle
APY29_10635	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_10635	PWY-7254	TCA cycle VII (acetate-producers)
APY29_10635	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_10645	PWY-3781	aerobic respiration I (cytochrome c)
APY29_10645	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APY29_10645	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_10645	PWY-5690	TCA cycle II (plants and fungi)
APY29_10645	PWY-6728	methylaspartate cycle
APY29_10645	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_10645	PWY-7254	TCA cycle VII (acetate-producers)
APY29_10645	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_10700	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_10720	PWY-5269	cardiolipin biosynthesis II
APY29_10720	PWY-5668	cardiolipin biosynthesis I
APY29_10720	PWY-7817	APY29_10720
APY29_11240	PWY-6012	acyl carrier protein metabolism I
APY29_11240	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APY29_11240	PWY-6289	petrobactin biosynthesis
APY29_11305	PWY-7158	L-phenylalanine degradation V
APY29_11555	PWY-5194	siroheme biosynthesis
APY29_11555	PWY-5196	factor 430 biosynthesis
APY29_11555	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APY29_11565	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APY29_11565	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
APY29_11570	PWY-6823	molybdenum cofactor biosynthesis
APY29_11875	PWY-6823	molybdenum cofactor biosynthesis
APY29_11910	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APY29_11910	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APY29_11910	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_11910	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_11910	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APY29_11910	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_11910	PWY-7205	CMP phosphorylation
APY29_11910	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_11910	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_11910	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APY29_11910	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_11910	PWY-7224	purine deoxyribonucleosides salvage
APY29_11910	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_11910	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APY29_11920	PWY-1361	benzoyl-CoA degradation I (aerobic)
APY29_11920	PWY-5109	2-methylbutanoate biosynthesis
APY29_11920	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APY29_11920	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APY29_11920	PWY-5177	glutaryl-CoA degradation
APY29_11920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_11920	PWY-6435	4-hydroxybenzoate biosynthesis V
APY29_11920	PWY-6583	pyruvate fermentation to butanol I
APY29_11920	PWY-6863	pyruvate fermentation to hexanol
APY29_11920	PWY-6883	pyruvate fermentation to butanol II
APY29_11920	PWY-6944	androstenedione degradation
APY29_11920	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_11920	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_11920	PWY-7007	methyl ketone biosynthesis
APY29_11920	PWY-7046	4-coumarate degradation (anaerobic)
APY29_11920	PWY-7094	fatty acid salvage
APY29_11920	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_11920	PWY-735	jasmonic acid biosynthesis
APY29_11920	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APY29_11920	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APY29_11920	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
APY29_11920	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
APY29_11920	PWY-7726	APY29_11920
APY29_11920	PWY-7778	APY29_11920
APY29_11920	PWY-7779	APY29_11920
APY29_11970	PWY-7801	APY29_11970
APY29_11995	PWY-7887	APY29_11995
APY29_11995	PWY-7892	APY29_11995
APY29_12165	PWY-4381	fatty acid biosynthesis initiation I
APY29_12245	PWY-7980	APY29_12245
APY29_12575	PWY-5747	2-methylcitrate cycle II
APY29_12675	PWY-7805	APY29_12675
APY29_12675	PWY-7807	APY29_12675
APY29_12690	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_12690	PWY-5686	UMP biosynthesis
APY29_12690	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_12690	PWY-7790	APY29_12690
APY29_12690	PWY-7791	APY29_12690
APY29_12700	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APY29_12700	PWY-5686	UMP biosynthesis
APY29_12700	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APY29_12700	PWY-7790	APY29_12700
APY29_12700	PWY-7791	APY29_12700
APY29_12705	PWY-2941	L-lysine biosynthesis II
APY29_12705	PWY-2942	L-lysine biosynthesis III
APY29_12705	PWY-5097	L-lysine biosynthesis VI
APY29_12805	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APY29_12810	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APY29_12810	PWY-5389	3-methylthiopropanoate biosynthesis
APY29_12900	PWY-702	L-methionine biosynthesis II
APY29_12905	PWY-2941	L-lysine biosynthesis II
APY29_12905	PWY-2942	L-lysine biosynthesis III
APY29_12905	PWY-5097	L-lysine biosynthesis VI
APY29_12905	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
APY29_12905	PWY-6559	spermidine biosynthesis II
APY29_12905	PWY-6562	norspermidine biosynthesis
APY29_12905	PWY-7153	grixazone biosynthesis
APY29_12905	PWY-7977	APY29_12905
APY29_12970	PWY-5686	UMP biosynthesis
APY29_12975	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_12975	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_12975	PWY-7953	APY29_12975
APY29_12985	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_12985	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_13050	PWY-3801	sucrose degradation II (sucrose synthase)
APY29_13050	PWY-5054	sorbitol biosynthesis I
APY29_13050	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APY29_13050	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APY29_13050	PWY-5659	GDP-mannose biosynthesis
APY29_13050	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_13050	PWY-621	sucrose degradation III (sucrose invertase)
APY29_13050	PWY-622	starch biosynthesis
APY29_13050	PWY-6981	chitin biosynthesis
APY29_13050	PWY-6992	1,5-anhydrofructose degradation
APY29_13050	PWY-7238	sucrose biosynthesis II
APY29_13050	PWY-7347	sucrose biosynthesis III
APY29_13050	PWY-7385	1,3-propanediol biosynthesis (engineered)
APY29_13055	PWY-5155	&beta;-alanine biosynthesis III
APY29_13065	PWY-6654	phosphopantothenate biosynthesis III
APY29_13070	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_13070	PWY-6148	tetrahydromethanopterin biosynthesis
APY29_13070	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APY29_13070	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_13070	PWY-7852	APY29_13070
APY29_13070	PWY-7853	APY29_13070
APY29_13085	PWY-5663	tetrahydrobiopterin biosynthesis I
APY29_13085	PWY-5664	tetrahydrobiopterin biosynthesis II
APY29_13085	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_13085	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_13085	PWY-6983	tetrahydrobiopterin biosynthesis III
APY29_13085	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APY29_13085	PWY-7852	APY29_13085
APY29_13115	PWY-4261	glycerol degradation I
APY29_13120	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_13130	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_13135	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_13170	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_13170	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_13170	PWY-7242	D-fructuronate degradation
APY29_13170	PWY-7310	D-glucosaminate degradation
APY29_13170	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APY29_13185	PWY-7130	L-glucose degradation
APY29_13200	PWY-2941	L-lysine biosynthesis II
APY29_13200	PWY-2942	L-lysine biosynthesis III
APY29_13200	PWY-5097	L-lysine biosynthesis VI
APY29_13235	PWY-6910	hydroxymethylpyrimidine salvage
APY29_13235	PWY-7356	thiamin salvage IV (yeast)
APY29_13235	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APY29_13330	PWY-2781	<i>cis</i>-zeatin biosynthesis
APY29_13335	PWY-6614	tetrahydrofolate biosynthesis
APY29_13375	PWY-5381	pyridine nucleotide cycling (plants)
APY29_13375	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APY29_13375	PWY-6596	adenosine nucleotides degradation I
APY29_13375	PWY-6606	guanosine nucleotides degradation II
APY29_13375	PWY-6607	guanosine nucleotides degradation I
APY29_13375	PWY-6608	guanosine nucleotides degradation III
APY29_13375	PWY-7185	UTP and CTP dephosphorylation I
APY29_13375	PWY-7821	APY29_13375
APY29_13390	PWY-7560	methylerythritol phosphate pathway II
APY29_13405	PWY-1042	glycolysis IV (plant cytosol)
APY29_13405	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_13405	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APY29_13405	PWY-5484	glycolysis II (from fructose 6-phosphate)
APY29_13405	PWY-5723	Rubisco shunt
APY29_13405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_13405	PWY-6886	1-butanol autotrophic biosynthesis
APY29_13405	PWY-6901	superpathway of glucose and xylose degradation
APY29_13405	PWY-7003	glycerol degradation to butanol
APY29_13405	PWY-7124	ethylene biosynthesis V (engineered)
APY29_13405	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APY29_13415	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_13415	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APY29_13420	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APY29_13420	PWY-7177	UTP and CTP dephosphorylation II
APY29_13420	PWY-7185	UTP and CTP dephosphorylation I
APY29_13550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_13550	PWY-6578	8-amino-7-oxononanoate biosynthesis III
APY29_13550	PWY-7147	8-amino-7-oxononanoate biosynthesis II
APY29_13565	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APY29_13565	PWY-7688	APY29_13565
APY29_13770	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APY29_13785	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_13845	PWY-5028	L-histidine degradation II
APY29_13845	PWY-5030	L-histidine degradation III
APY29_13850	PWY-5028	L-histidine degradation II
APY29_13850	PWY-5030	L-histidine degradation III
APY29_13860	PWY-5028	L-histidine degradation II
APY29_13860	PWY-5030	L-histidine degradation III
APY29_13880	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APY29_13880	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APY29_14035	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_14035	PWY-5743	3-hydroxypropanoate cycle
APY29_14035	PWY-5744	glyoxylate assimilation
APY29_14035	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_14035	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_14035	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_14035	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_14040	PWY-5647	2-nitrobenzoate degradation I
APY29_14040	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APY29_14040	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APY29_14040	PWY-6505	L-tryptophan degradation XII (Geobacillus)
APY29_14050	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APY29_14050	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APY29_14055	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APY29_14055	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APY29_14055	PWY-7717	APY29_14055
APY29_14055	PWY-7765	APY29_14055
APY29_14080	PWY-5381	pyridine nucleotide cycling (plants)
APY29_14080	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APY29_14080	PWY-6596	adenosine nucleotides degradation I
APY29_14080	PWY-6606	guanosine nucleotides degradation II
APY29_14080	PWY-6607	guanosine nucleotides degradation I
APY29_14080	PWY-6608	guanosine nucleotides degradation III
APY29_14080	PWY-7185	UTP and CTP dephosphorylation I
APY29_14080	PWY-7821	APY29_14080
APY29_14085	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APY29_14085	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APY29_14085	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APY29_14160	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_14160	PWY-5743	3-hydroxypropanoate cycle
APY29_14160	PWY-5744	glyoxylate assimilation
APY29_14160	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_14160	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_14160	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_14160	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_14230	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_14265	PWY-2201	folate transformations I
APY29_14265	PWY-3841	folate transformations II
APY29_14265	PWY-7977	APY29_14265
APY29_14305	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APY29_14305	PWY-7820	APY29_14305
APY29_14355	PWY-5392	reductive TCA cycle II
APY29_14355	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_14355	PWY-5690	TCA cycle II (plants and fungi)
APY29_14355	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_14355	PWY-6728	methylaspartate cycle
APY29_14355	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_14355	PWY-7254	TCA cycle VII (acetate-producers)
APY29_14355	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_14390	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_14395	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_14400	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APY29_14400	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APY29_14445	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APY29_14450	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APY29_14450	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APY29_14700	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_14700	PWY-5743	3-hydroxypropanoate cycle
APY29_14700	PWY-5744	glyoxylate assimilation
APY29_14700	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_14700	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_14700	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_14700	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_14715	PWY-5392	reductive TCA cycle II
APY29_14715	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_14715	PWY-5690	TCA cycle II (plants and fungi)
APY29_14715	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_14715	PWY-6728	methylaspartate cycle
APY29_14715	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_14715	PWY-7254	TCA cycle VII (acetate-producers)
APY29_14715	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APY29_14865	PWY-7799	APY29_14865
APY29_14865	PWY-7800	APY29_14865
APY29_14930	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_14930	PWY-5981	CDP-diacylglycerol biosynthesis III
APY29_14930	PWY-7817	APY29_14930
APY29_14935	PWY-7560	methylerythritol phosphate pathway II
APY29_14960	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_14960	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_14960	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_14960	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_14960	PWY-6113	superpathway of mycolate biosynthesis
APY29_14960	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_14960	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_14960	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_14960	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_14960	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_14960	PWY-7858	APY29_14960
APY29_14960	PWYG-321	mycolate biosynthesis
APY29_14985	PWY-4381	fatty acid biosynthesis initiation I
APY29_14985	PWY-5743	3-hydroxypropanoate cycle
APY29_14985	PWY-5744	glyoxylate assimilation
APY29_14985	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_14985	PWY-6722	candicidin biosynthesis
APY29_15365	PWY-6902	chitin degradation II
APY29_15365	PWY-7822	APY29_15365
APY29_15365	PWY-7883	APY29_15365
APY29_15445	PWY-1361	benzoyl-CoA degradation I (aerobic)
APY29_15445	PWY-5109	2-methylbutanoate biosynthesis
APY29_15445	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APY29_15445	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APY29_15445	PWY-5177	glutaryl-CoA degradation
APY29_15445	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_15445	PWY-6435	4-hydroxybenzoate biosynthesis V
APY29_15445	PWY-6583	pyruvate fermentation to butanol I
APY29_15445	PWY-6863	pyruvate fermentation to hexanol
APY29_15445	PWY-6883	pyruvate fermentation to butanol II
APY29_15445	PWY-6944	androstenedione degradation
APY29_15445	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_15445	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_15445	PWY-7007	methyl ketone biosynthesis
APY29_15445	PWY-7046	4-coumarate degradation (anaerobic)
APY29_15445	PWY-7094	fatty acid salvage
APY29_15445	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APY29_15445	PWY-735	jasmonic acid biosynthesis
APY29_15445	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APY29_15445	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APY29_15445	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
APY29_15445	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
APY29_15445	PWY-7726	APY29_15445
APY29_15445	PWY-7778	APY29_15445
APY29_15445	PWY-7779	APY29_15445
APY29_15475	PWY-5642	2,4-dinitrotoluene degradation
APY29_15495	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_15505	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_15570	PWY-5506	methanol oxidation to formaldehyde IV
APY29_15605	PWY-6829	tRNA methylation (yeast)
APY29_15605	PWY-7285	methylwyosine biosynthesis
APY29_15605	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APY29_15625	PWY-723	alkylnitronates degradation
APY29_15645	PWY-6317	galactose degradation I (Leloir pathway)
APY29_15790	PWY-3781	aerobic respiration I (cytochrome c)
APY29_15790	PWY-4521	arsenite oxidation I (respiratory)
APY29_15790	PWY-6692	Fe(II) oxidation
APY29_15790	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APY29_15790	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
APY29_15940	PWY-7560	methylerythritol phosphate pathway II
APY29_15945	PWY-7884	APY29_15945
APY29_15955	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APY29_15955	PWY-6167	flavin biosynthesis II (archaea)
APY29_15955	PWY-6168	flavin biosynthesis III (fungi)
APY29_15955	PWY-7863	APY29_15955
APY29_16030	PWY-7802	APY29_16030
APY29_16490	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_16535	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_16535	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_16535	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_16535	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_16585	PWY-5747	2-methylcitrate cycle II
APY29_16620	PWY-5958	acridone alkaloid biosynthesis
APY29_16620	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APY29_16620	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APY29_16635	PWY-5367	petroselinate biosynthesis
APY29_16635	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APY29_16635	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APY29_16635	PWY-5989	stearate biosynthesis II (bacteria and plants)
APY29_16635	PWY-5994	palmitate biosynthesis I (animals and fungi)
APY29_16635	PWY-6113	superpathway of mycolate biosynthesis
APY29_16635	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APY29_16635	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_16635	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_16635	PWY-7663	gondoate biosynthesis (anaerobic)
APY29_16635	PWY-7664	oleate biosynthesis IV (anaerobic)
APY29_16635	PWY-7858	APY29_16635
APY29_16635	PWYG-321	mycolate biosynthesis
APY29_16640	PWY-4381	fatty acid biosynthesis initiation I
APY29_16640	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APY29_16640	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APY29_16650	PWY-4381	fatty acid biosynthesis initiation I
APY29_16730	PWY-6823	molybdenum cofactor biosynthesis
APY29_16730	PWY-7887	APY29_16730
APY29_16740	PWY-6823	molybdenum cofactor biosynthesis
APY29_16750	PWY-6823	molybdenum cofactor biosynthesis
APY29_16760	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APY29_16760	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
APY29_16800	PWY-5386	methylglyoxal degradation I
APY29_16975	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_16975	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_16975	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_16975	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APY29_16990	PWY-2161	folate polyglutamylation
APY29_17010	PWY-7782	APY29_17010
APY29_17010	PWY-7783	APY29_17010
APY29_17020	PWY-7378	aminopropanol phosphate biosynthesis II
APY29_17095	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_17095	PWY-5392	reductive TCA cycle II
APY29_17095	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APY29_17095	PWY-5690	TCA cycle II (plants and fungi)
APY29_17095	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_17095	PWY-6728	methylaspartate cycle
APY29_17095	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_17095	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_17095	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APY29_17125	PWY-6164	3-dehydroquinate biosynthesis I
APY29_17370	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APY29_17390	PWY-7560	methylerythritol phosphate pathway II
APY29_17405	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_17415	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
APY29_17450	PWY-7731	APY29_17450
APY29_17490	PWY-5057	L-valine degradation II
APY29_17490	PWY-5076	L-leucine degradation III
APY29_17490	PWY-5078	L-isoleucine degradation II
APY29_17490	PWY-5101	L-isoleucine biosynthesis II
APY29_17490	PWY-5103	L-isoleucine biosynthesis III
APY29_17490	PWY-5104	L-isoleucine biosynthesis IV
APY29_17490	PWY-5108	L-isoleucine biosynthesis V
APY29_17490	PWY-7767	APY29_17490
APY29_17605	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_17605	PWY-5723	Rubisco shunt
APY29_17620	PWY-2582	brassinosteroid biosynthesis II
APY29_17620	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APY29_17620	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APY29_17620	PWY-6948	sitosterol degradation to androstenedione
APY29_17620	PWY-699	brassinosteroid biosynthesis I
APY29_17620	PWY-7299	progesterone biosynthesis
APY29_17690	PWY-5530	sorbitol biosynthesis II
APY29_17900	PWY-3841	folate transformations II
APY29_17900	PWY-6614	tetrahydrofolate biosynthesis
APY29_17910	PWY-3841	folate transformations II
APY29_17910	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APY29_17910	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APY29_17910	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APY29_17910	PWY-7199	pyrimidine deoxyribonucleosides salvage
APY29_17910	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APY29_17935	PWY-7039	phosphatidate metabolism, as a signaling molecule
APY29_17935	PWY-7817	APY29_17935
APY29_18050	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APY29_18050	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APY29_18085	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_18085	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APY29_18085	PWY-5913	TCA cycle VI (obligate autotrophs)
APY29_18085	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APY29_18085	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APY29_18085	PWY-6549	L-glutamine biosynthesis III
APY29_18085	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APY29_18085	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APY29_18085	PWY-7124	ethylene biosynthesis V (engineered)
APY29_18095	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APY29_18160	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_18165	PWY-2201	folate transformations I
APY29_18165	PWY-3841	folate transformations II
APY29_18175	PWY-6502	oxidized GTP and dGTP detoxification
APY29_18175	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APY29_18175	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APY29_18175	PWY-6897	thiamin salvage II
APY29_18175	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APY29_18175	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APY29_18175	PWY-7356	thiamin salvage IV (yeast)
APY29_18175	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APY29_18215	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_18215	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_18215	PWY-7953	APY29_18215
APY29_18220	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_18220	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_18220	PWY-7953	APY29_18220
APY29_18225	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18225	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_18225	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_18225	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18230	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18230	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_18230	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_18230	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18235	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18235	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_18235	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18240	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_18240	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_18240	PWY-7953	APY29_18240
APY29_18250	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18250	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18365	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APY29_18365	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APY29_18365	PWY-6896	thiamin salvage I
APY29_18365	PWY-6897	thiamin salvage II
APY29_18375	PWY-6167	flavin biosynthesis II (archaea)
APY29_18375	PWY-6168	flavin biosynthesis III (fungi)
APY29_18380	PWY-6167	flavin biosynthesis II (archaea)
APY29_18380	PWY-6168	flavin biosynthesis III (fungi)
APY29_18380	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_18380	PWY-7991	APY29_18380
APY29_18405	PWY-7991	APY29_18405
APY29_18420	PWY-1622	formaldehyde assimilation I (serine pathway)
APY29_18420	PWY-181	photorespiration
APY29_18420	PWY-2161	folate polyglutamylation
APY29_18420	PWY-2201	folate transformations I
APY29_18420	PWY-3661	glycine betaine degradation I
APY29_18420	PWY-3661-1	glycine betaine degradation II (mammalian)
APY29_18420	PWY-3841	folate transformations II
APY29_18420	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_18460	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_18465	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_18470	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_18470	PWY-3162	L-tryptophan degradation V (side chain pathway)
APY29_18470	PWY-5057	L-valine degradation II
APY29_18470	PWY-5076	L-leucine degradation III
APY29_18470	PWY-5078	L-isoleucine degradation II
APY29_18470	PWY-5079	L-phenylalanine degradation III
APY29_18470	PWY-5082	L-methionine degradation III
APY29_18470	PWY-5480	pyruvate fermentation to ethanol I
APY29_18470	PWY-5486	pyruvate fermentation to ethanol II
APY29_18470	PWY-5751	phenylethanol biosynthesis
APY29_18470	PWY-6313	serotonin degradation
APY29_18470	PWY-6333	acetaldehyde biosynthesis I
APY29_18470	PWY-6342	noradrenaline and adrenaline degradation
APY29_18470	PWY-6587	pyruvate fermentation to ethanol III
APY29_18470	PWY-6802	salidroside biosynthesis
APY29_18470	PWY-6871	3-methylbutanol biosynthesis
APY29_18470	PWY-7013	L-1,2-propanediol degradation
APY29_18470	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_18470	PWY-7118	chitin degradation to ethanol
APY29_18470	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APY29_18470	PWY-7798	APY29_18470
APY29_18500	PWY-6840	homoglutathione biosynthesis
APY29_18500	PWY-7255	ergothioneine biosynthesis I (bacteria)
APY29_18545	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APY29_18545	PWY-7494	choline degradation IV
APY29_18550	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APY29_18550	PWY-7494	choline degradation IV
APY29_18565	PWY-6906	chitin derivatives degradation
APY29_18565	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APY29_18565	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APY29_18600	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_18705	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_18705	PWY-6148	tetrahydromethanopterin biosynthesis
APY29_18705	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APY29_18705	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APY29_18705	PWY-7852	APY29_18705
APY29_18705	PWY-7853	APY29_18705
APY29_18765	PWY-5381	pyridine nucleotide cycling (plants)
APY29_18795	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APY29_18795	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APY29_18800	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APY29_18800	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APY29_18815	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18815	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18840	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18840	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APY29_18840	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APY29_18840	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18845	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APY29_18845	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APY29_18880	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APY29_18880	PWY-3162	L-tryptophan degradation V (side chain pathway)
APY29_18880	PWY-5057	L-valine degradation II
APY29_18880	PWY-5076	L-leucine degradation III
APY29_18880	PWY-5078	L-isoleucine degradation II
APY29_18880	PWY-5079	L-phenylalanine degradation III
APY29_18880	PWY-5082	L-methionine degradation III
APY29_18880	PWY-5480	pyruvate fermentation to ethanol I
APY29_18880	PWY-5486	pyruvate fermentation to ethanol II
APY29_18880	PWY-5751	phenylethanol biosynthesis
APY29_18880	PWY-6313	serotonin degradation
APY29_18880	PWY-6333	acetaldehyde biosynthesis I
APY29_18880	PWY-6342	noradrenaline and adrenaline degradation
APY29_18880	PWY-6587	pyruvate fermentation to ethanol III
APY29_18880	PWY-6802	salidroside biosynthesis
APY29_18880	PWY-6871	3-methylbutanol biosynthesis
APY29_18880	PWY-7013	L-1,2-propanediol degradation
APY29_18880	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_18880	PWY-7118	chitin degradation to ethanol
APY29_18880	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APY29_18880	PWY-7798	APY29_18880
APY29_18930	PWY-5839	menaquinol-7 biosynthesis
APY29_18930	PWY-5844	menaquinol-9 biosynthesis
APY29_18930	PWY-5849	menaquinol-6 biosynthesis
APY29_18930	PWY-5890	menaquinol-10 biosynthesis
APY29_18930	PWY-5891	menaquinol-11 biosynthesis
APY29_18930	PWY-5892	menaquinol-12 biosynthesis
APY29_18930	PWY-5895	menaquinol-13 biosynthesis
APY29_18975	PWY-2941	L-lysine biosynthesis II
APY29_18975	PWY-5097	L-lysine biosynthesis VI
APY29_19030	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_19030	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APY29_19160	PWY-7892	APY29_19160
APY29_19285	PWY-6891	thiazole biosynthesis II (Bacillus)
APY29_19285	PWY-6892	thiazole biosynthesis I (E. coli)
APY29_19285	PWY-7560	methylerythritol phosphate pathway II
APY29_19340	PWY-5796	malonate decarboxylase activation
APY29_19345	PWY-5796	malonate decarboxylase activation
APY29_19350	PWY-6060	malonate degradation II (biotin-dependent)
APY29_19355	PWY-4381	fatty acid biosynthesis initiation I
APY29_19355	PWY-5743	3-hydroxypropanoate cycle
APY29_19355	PWY-5744	glyoxylate assimilation
APY29_19355	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_19355	PWY-6060	malonate degradation II (biotin-dependent)
APY29_19355	PWY-6722	candicidin biosynthesis
APY29_19365	PWY-5794	malonate degradation I (biotin-independent)
APY29_19365	PWY-6060	malonate degradation II (biotin-dependent)
APY29_19445	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APY29_19445	PWY-6164	3-dehydroquinate biosynthesis I
APY29_19445	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APY29_19510	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APY29_19510	PWY-6416	quinate degradation II
APY29_19510	PWY-6707	gallate biosynthesis
APY29_19620	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_19620	PWY-6124	inosine-5'-phosphate biosynthesis II
APY29_19620	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_19630	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APY29_19630	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APY29_19630	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APY29_19675	PWY-5381	pyridine nucleotide cycling (plants)
APY29_19675	PWY-7761	APY29_19675
APY29_19765	PWY-6834	spermidine biosynthesis III
APY29_19795	PWY-5958	acridone alkaloid biosynthesis
APY29_19795	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APY29_19795	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APY29_19805	PWY-5958	acridone alkaloid biosynthesis
APY29_19805	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APY29_19805	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APY29_19820	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APY29_19820	PWY-5723	Rubisco shunt
APY29_19835	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_19835	PWY-6124	inosine-5'-phosphate biosynthesis II
APY29_19835	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_19855	PWY-6855	chitin degradation I (archaea)
APY29_19855	PWY-6902	chitin degradation II
APY29_19855	PWY-7822	APY29_19855
APY29_20040	PWY-2661	trehalose biosynthesis V
APY29_20045	PWY-5941	glycogen degradation II (eukaryotic)
APY29_20045	PWY-6724	starch degradation II
APY29_20045	PWY-6737	starch degradation V
APY29_20045	PWY-7238	sucrose biosynthesis II
APY29_20050	PWY-2661	trehalose biosynthesis V
APY29_20055	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APY29_20055	PWY-622	starch biosynthesis
APY29_20055	PWY-7900	APY29_20055
APY29_20060	PWY-622	starch biosynthesis
APY29_20130	PWY-7980	APY29_20130
APY29_20240	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APY29_20245	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_20245	PWY-6578	8-amino-7-oxononanoate biosynthesis III
APY29_20245	PWY-7147	8-amino-7-oxononanoate biosynthesis II
APY29_20255	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_20265	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APY29_20330	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APY29_20335	PWY-6123	inosine-5'-phosphate biosynthesis I
APY29_20335	PWY-6124	inosine-5'-phosphate biosynthesis II
APY29_20335	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APY29_20335	PWY-7234	inosine-5'-phosphate biosynthesis III
APY29_20340	PWY-6041	4-sulfocatechol degradation
APY29_20350	PWY-1361	benzoyl-CoA degradation I (aerobic)
APY29_20350	PWY-2361	3-oxoadipate degradation
APY29_20350	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APY29_20380	PWY-4261	glycerol degradation I
APY29_20380	PWY-6118	glycerol-3-phosphate shuttle
APY29_20380	PWY-6952	glycerophosphodiester degradation
APY29_20390	PWY-4261	glycerol degradation I
APY29_20475	PWY-5101	L-isoleucine biosynthesis II
APY29_20475	PWY-5103	L-isoleucine biosynthesis III
APY29_20475	PWY-5104	L-isoleucine biosynthesis IV
APY29_20475	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APY29_20570	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APY29_20570	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APY29_20570	PWY-6936	seleno-amino acid biosynthesis
APY29_20570	PWY-702	L-methionine biosynthesis II
APY29_20590	PWY-6700	queuosine biosynthesis
APY29_20595	PWY-2201	folate transformations I
APY29_20595	PWY-3841	folate transformations II
APY29_20630	PWY-2201	folate transformations I
APY29_20630	PWY-5497	purine nucleobases degradation II (anaerobic)
APY29_20630	PWY-7909	APY29_20630
APY29_20730	PWY-5169	cyanurate degradation
APY29_20730	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APY29_20760	PWY-6832	2-aminoethylphosphonate degradation II
APY29_20775	PWY-5691	urate degradation to allantoin I
APY29_20775	PWY-7394	urate degradation to allantoin II
APY29_20775	PWY-7849	APY29_20775
APY29_20785	PWY-5691	urate degradation to allantoin I
APY29_20785	PWY-7394	urate degradation to allantoin II
APY29_20785	PWY-7849	APY29_20785
APY29_20955	PWY-4381	fatty acid biosynthesis initiation I
APY29_20955	PWY-5743	3-hydroxypropanoate cycle
APY29_20955	PWY-5744	glyoxylate assimilation
APY29_20955	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APY29_20955	PWY-6722	candicidin biosynthesis
APY29_20990	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_20995	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APY29_20995	PWY-7118	chitin degradation to ethanol
APY29_20995	PWY-7294	xylose degradation IV
APY29_20995	PWY-7295	L-arabinose degradation IV
APY29_20995	PWY-7854	APY29_20995
APY29_21080	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APY29_21080	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APY29_21080	PWY-7953	APY29_21080
APY29_21120	PWY-4381	fatty acid biosynthesis initiation I
APY29_21175	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_21175	PWY-5981	CDP-diacylglycerol biosynthesis III
APY29_21175	PWY-7902	APY29_21175
APY29_21205	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APY29_21205	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APY29_21235	PWY-6854	ethylene biosynthesis III (microbes)
APY29_21240	PWY-6854	ethylene biosynthesis III (microbes)
APY29_21265	PWY-381	nitrate reduction II (assimilatory)
APY29_21265	PWY-5675	nitrate reduction V (assimilatory)
APY29_21265	PWY-6549	L-glutamine biosynthesis III
APY29_21265	PWY-6963	ammonia assimilation cycle I
APY29_21265	PWY-6964	ammonia assimilation cycle II
APY29_21270	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APY29_21365	PWY-7255	ergothioneine biosynthesis I (bacteria)
APY29_21365	PWY-7550	ergothioneine biosynthesis II (fungi)
APY29_21370	PWY-7255	ergothioneine biosynthesis I (bacteria)
APY29_21425	PWY-6134	L-tyrosine biosynthesis IV
APY29_21425	PWY-7158	L-phenylalanine degradation V
APY29_21450	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_21450	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APY29_21455	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APY29_21625	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_21645	PWY-6531	mannitol cycle
APY29_21695	PWY-4261	glycerol degradation I
APY29_21715	PWY-6717	(1,4)-&beta;-xylan degradation
APY29_21715	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APY29_21720	PWY-6807	xyloglucan degradation II (exoglucanase)
APY29_21725	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
APY29_21725	PWY-7248	pectin degradation III
APY29_21740	PWY-6717	(1,4)-&beta;-xylan degradation
APY29_21740	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APY29_21830	PWY-5667	CDP-diacylglycerol biosynthesis I
APY29_21830	PWY-6453	stigma estolide biosynthesis
APY29_21830	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APY29_21830	PWY-7587	oleate biosynthesis III (cyanobacteria)
APY29_21865	PWY-5686	UMP biosynthesis
APY29_21865	PWY-7790	APY29_21865
APY29_21865	PWY-7791	APY29_21865
APY29_21895	PWY-7199	pyrimidine deoxyribonucleosides salvage
APY29_21955	PWY-5874	heme degradation
APY29_22000	PWY-5663	tetrahydrobiopterin biosynthesis I
APY29_22000	PWY-5664	tetrahydrobiopterin biosynthesis II
APY29_22000	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APY29_22000	PWY-6703	preQ<sub>0</sub> biosynthesis
APY29_22000	PWY-6983	tetrahydrobiopterin biosynthesis III
APY29_22000	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APY29_22000	PWY-7852	APY29_22000
APY29_22115	PWY-5169	cyanurate degradation
APY29_22115	PWY-5703	urea degradation I
APY29_22120	PWY-5169	cyanurate degradation
APY29_22120	PWY-5703	urea degradation I
APY29_22120	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APY29_22305	PWY-6348	phosphate acquisition
