APY29_00005 PF00308 Bacterial dnaA protein APY29_00005 PF08299 Bacterial dnaA protein helix-turn-helix APY29_00005 PF11638 DnaA N-terminal domain APY29_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain APY29_00010 PF02767 DNA polymerase III beta subunit, central domain APY29_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain APY29_00015 PF02463 RecF/RecN/SMC N terminal domain APY29_00020 PF00204 DNA gyrase B APY29_00020 PF00986 DNA gyrase B subunit, carboxyl terminus APY29_00020 PF01751 Toprim domain APY29_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_00025 PF02517 CAAX protease self-immunity APY29_00030 PF01435 Peptidase family M48 APY29_00035 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) APY29_00040 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_00045 PF01618 APY29_00045 APY29_00050 PF02472 Biopolymer transport protein ExbD/TolR APY29_00055 PF02472 Biopolymer transport protein ExbD/TolR APY29_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APY29_00070 PF13091 PLD-like domain APY29_00075 PF01527 Transposase APY29_00080 PF00665 Integrase core domain APY29_00105 PF07791 APY29_00105 APY29_00110 PF04002 RadC-like JAB domain APY29_00120 PF01527 Transposase APY29_00125 PF13276 APY29_00125 APY29_00125 PF13683 APY29_00125 APY29_00130 PF07751 APY29_00130 APY29_00135 PF01527 Transposase APY29_00145 PF00665 Integrase core domain APY29_00150 PF01527 Transposase APY29_00160 PF00589 Phage integrase family APY29_00170 PF01694 Rhomboid family APY29_00175 PF08850 APY29_00175 APY29_00185 PF03572 Peptidase family S41 APY29_00185 PF13180 PDZ domain APY29_00190 PF01551 Peptidase family M23 APY29_00200 PF02225 PA domain APY29_00200 PF04389 Peptidase family M28 APY29_00205 PF13670 APY29_00205 APY29_00210 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_00215 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_00225 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_00230 PF00107 Zinc-binding dehydrogenase APY29_00230 PF08240 Alcohol dehydrogenase GroES-like domain APY29_00235 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_00235 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APY29_00240 PF00310 Glutamine amidotransferases class-II APY29_00240 PF01493 GXGXG motif APY29_00240 PF01645 Conserved region in glutamate synthase APY29_00240 PF04898 Glutamate synthase central domain APY29_00245 PF11720 Peptidase inhibitor I78 family APY29_00250 PF01028 Eukaryotic DNA topoisomerase I, catalytic core APY29_00265 PF05368 NmrA-like family APY29_00275 PF00534 Glycosyl transferases group 1 APY29_00275 PF13439 Glycosyltransferase Family 4 APY29_00280 PF00534 Glycosyl transferases group 1 APY29_00280 PF13439 Glycosyltransferase Family 4 APY29_00285 PF02397 APY29_00285 APY29_00285 PF13727 CoA-binding domain APY29_00290 PF02350 UDP-N-acetylglucosamine 2-epimerase APY29_00295 PF04932 APY29_00295 APY29_00300 PF03808 APY29_00300 APY29_00305 PF13439 Glycosyltransferase Family 4 APY29_00305 PF13692 Glycosyl transferases group 1 APY29_00320 PF13489 Methyltransferase domain APY29_00325 PF00733 Asparagine synthase APY29_00325 PF13537 Glutamine amidotransferase domain APY29_00335 PF05711 Macrocin-O-methyltransferase (TylF) APY29_00340 PF01370 NAD dependent epimerase/dehydratase family APY29_00350 PF01943 APY29_00350 APY29_00350 PF14667 Polysaccharide biosynthesis C-terminal domain APY29_00355 PF00005 ABC transporter APY29_00355 PF00664 ABC transporter transmembrane region APY29_00360 PF13471 APY29_00360 APY29_00370 PF00733 Asparagine synthase APY29_00370 PF13537 Glutamine amidotransferase domain APY29_00375 PF13847 Methyltransferase domain APY29_00380 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APY29_00390 PF00685 Sulfotransferase domain APY29_00395 PF13673 Acetyltransferase (GNAT) domain APY29_00400 PF07484 Phage Tail Collar Domain APY29_00405 PF07484 Phage Tail Collar Domain APY29_00410 PF07484 Phage Tail Collar Domain APY29_00415 PF14907 Uncharacterised nucleotidyltransferase APY29_00420 PF03965 Penicillinase repressor APY29_00425 PF05569 BlaR1 peptidase M56 APY29_00435 PF03435 Saccharopine dehydrogenase APY29_00440 PF08975 Domain of unknown function (DUF1868) APY29_00445 PF00593 TonB dependent receptor APY29_00445 PF07715 TonB-dependent Receptor Plug Domain APY29_00450 PF00480 ROK family APY29_00455 PF03009 Glycerophosphoryl diester phosphodiesterase family APY29_00460 PF13482 RNase_H superfamily APY29_00465 PF00270 DEAD/DEAH box helicase APY29_00465 PF00271 Helicase conserved C-terminal domain APY29_00465 PF09369 APY29_00465 APY29_00470 PF03006 APY29_00470 APY29_00475 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APY29_00480 PF05016 Plasmid stabilisation system protein APY29_00485 PF00106 short chain dehydrogenase APY29_00490 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_00495 PF03466 LysR substrate binding domain APY29_00500 PF00665 Integrase core domain APY29_00505 PF01527 Transposase APY29_00510 PF13385 Concanavalin A-like lectin/glucanases superfamily APY29_00515 PF00593 TonB dependent receptor APY29_00515 PF07715 TonB-dependent Receptor Plug Domain APY29_00520 PF00294 pfkB family carbohydrate kinase APY29_00530 PF07055 Enoyl reductase FAD binding domain APY29_00530 PF12241 Trans-2-enoyl-CoA reductase catalytic region APY29_00530 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase APY29_00535 PF00486 Transcriptional regulatory protein, C terminal APY29_00535 PF13191 AAA ATPase domain APY29_00555 PF00072 Response regulator receiver domain APY29_00555 PF00196 Bacterial regulatory proteins, luxR family APY29_00560 PF07730 Histidine kinase APY29_00565 PF00144 Beta-lactamase APY29_00570 PF01070 FMN-dependent dehydrogenase APY29_00575 PF02735 Ku70/Ku80 beta-barrel domain APY29_00590 PF05610 APY29_00590 APY29_00595 PF01526 APY29_00595 APY29_00600 PF13369 APY29_00600 APY29_00625 PF07883 Cupin domain APY29_00635 PF00593 TonB dependent receptor APY29_00635 PF07715 TonB-dependent Receptor Plug Domain APY29_00640 PF00155 Aminotransferase class I and II APY29_00645 PF00316 Fructose-1-6-bisphosphatase APY29_00655 PF01523 Putative modulator of DNA gyrase APY29_00660 PF01523 Putative modulator of DNA gyrase APY29_00665 PF01523 Putative modulator of DNA gyrase APY29_00670 PF13709 Domain of unknown function (DUF4159) APY29_00675 PF07726 ATPase family associated with various cellular activities (AAA) APY29_00680 PF01882 APY29_00680 APY29_00685 PF07584 APY29_00685 APY29_00700 PF06080 APY29_00700 APY29_00705 PF12787 APY29_00705 APY29_00710 PF08327 Activator of Hsp90 ATPase homolog 1-like protein APY29_00725 PF00085 Thioredoxin APY29_00730 PF10116 APY29_00730 APY29_00745 PF00293 NUDIX domain APY29_00750 PF13460 NADH(P)-binding APY29_00755 PF01527 Transposase APY29_00760 PF00665 Integrase core domain APY29_00770 PF12802 MarR family APY29_00775 PF00128 Alpha amylase, catalytic domain APY29_00775 PF11896 Domain of unknown function (DUF3416) APY29_00780 PF00128 Alpha amylase, catalytic domain APY29_00780 PF16657 APY29_00780 APY29_00785 PF00128 Alpha amylase, catalytic domain APY29_00785 PF02806 Alpha amylase, C-terminal all-beta domain APY29_00785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_00790 PF12850 Calcineurin-like phosphoesterase superfamily domain APY29_00795 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_00800 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_00825 PF04956 APY29_00825 APY29_00830 PF05101 APY29_00830 APY29_00840 PF07996 Type IV secretion system proteins APY29_00855 PF04610 APY29_00855 APY29_00860 PF04335 VirB8 protein APY29_00865 PF03524 Conjugal transfer protein APY29_00870 PF03743 Bacterial conjugation TrbI-like protein APY29_00875 PF00437 Type II/IV secretion system protein APY29_00880 PF01464 Transglycosylase SLT domain APY29_00895 PF11455 APY29_00895 APY29_00900 PF02452 PemK-like protein APY29_00905 PF08751 TrwC relaxase APY29_00905 PF13538 UvrD-like helicase C-terminal domain APY29_00905 PF13604 AAA domain APY29_00935 PF15738 APY29_00935 APY29_00940 PF04221 RelB antitoxin APY29_00950 PF14020 APY29_00950 APY29_00970 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_00975 PF00665 Integrase core domain APY29_00980 PF01527 Transposase APY29_00995 PF13360 PQQ-like domain APY29_01000 PF13671 AAA domain APY29_01005 PF13347 MFS/sugar transport protein APY29_01010 PF06165 Glycosyltransferase family 36 APY29_01010 PF17167 APY29_01010 APY29_01015 PF15979 APY29_01015 APY29_01025 PF00072 Response regulator receiver domain APY29_01025 PF00512 His Kinase A (phospho-acceptor) domain APY29_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_01025 PF12860 APY29_01025 APY29_01030 PF02659 APY29_01030 APY29_01040 PF01614 Bacterial transcriptional regulator APY29_01040 PF09339 IclR helix-turn-helix domain APY29_01045 PF07690 Major Facilitator Superfamily APY29_01050 PF05336 Domain of unknown function (DUF718) APY29_01055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_01055 PF13378 Enolase C-terminal domain-like APY29_01060 PF01557 Fumarylacetoacetate (FAA) hydrolase family APY29_01065 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_01070 PF04909 Amidohydrolase APY29_01075 PF00248 Aldo/keto reductase family APY29_01095 PF08534 Redoxin APY29_01105 PF14415 Domain of unknown function (DUF4424) APY29_01110 PF00072 Response regulator receiver domain APY29_01110 PF00196 Bacterial regulatory proteins, luxR family APY29_01115 PF00501 AMP-binding enzyme APY29_01115 PF13193 AMP-binding enzyme C-terminal domain APY29_01115 PF16177 APY29_01115 APY29_01125 PF04341 APY29_01125 APY29_01130 PF00474 Sodium:solute symporter family APY29_01135 PF03009 Glycerophosphoryl diester phosphodiesterase family APY29_01140 PF13616 PPIC-type PPIASE domain APY29_01150 PF00480 ROK family APY29_01155 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_01160 PF04828 Glutathione-dependent formaldehyde-activating enzyme APY29_01165 PF04226 APY29_01165 APY29_01175 PF01648 4'-phosphopantetheinyl transferase superfamily APY29_01180 PF09423 PhoD-like phosphatase APY29_01180 PF16655 APY29_01180 APY29_01185 PF09423 PhoD-like phosphatase APY29_01185 PF16655 APY29_01185 APY29_01190 PF02527 rRNA small subunit methyltransferase G APY29_01195 PF05960 Bacterial protein of unknown function (DUF885) APY29_01205 PF02321 Outer membrane efflux protein APY29_01210 PF16576 APY29_01210 APY29_01220 PF00873 AcrB/AcrD/AcrF family APY29_01225 PF00830 Ribosomal L28 family APY29_01230 PF00471 Ribosomal protein L33 APY29_01235 PF04909 Amidohydrolase APY29_01240 PF04303 PrpF protein APY29_01245 PF03737 Demethylmenaquinone methyltransferase APY29_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_01250 PF03466 LysR substrate binding domain APY29_01255 PF13091 PLD-like domain APY29_01255 PF13396 APY29_01255 APY29_01265 PF13454 FAD-NAD(P)-binding APY29_01270 PF00580 UvrD/REP helicase N-terminal domain APY29_01270 PF13361 UvrD-like helicase C-terminal domain APY29_01280 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_01280 PF12464 Maltose acetyltransferase APY29_01285 PF00582 Universal stress protein family APY29_01290 PF12833 Helix-turn-helix domain APY29_01295 PF05591 APY29_01295 APY29_01300 PF05943 APY29_01300 APY29_01305 PF05638 Protein of unknown function (DUF796) APY29_01310 PF07024 ImpE protein APY29_01315 PF04965 Gene 25-like lysozyme APY29_01320 PF05947 APY29_01320 APY29_01325 PF06996 APY29_01325 APY29_01330 PF00004 ATPase family associated with various cellular activities (AAA) APY29_01330 PF07724 AAA domain (Cdc48 subfamily) APY29_01330 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_01335 PF00665 Integrase core domain APY29_01340 PF01527 Transposase APY29_01360 PF01419 Jacalin-like lectin domain APY29_01365 PF00328 Histidine phosphatase superfamily (branch 2) APY29_01375 PF04773 FecR protein APY29_01375 PF16220 APY29_01375 APY29_01375 PF16344 APY29_01375 APY29_01380 PF04542 Sigma-70 region 2 APY29_01380 PF08281 Sigma-70, region 4 APY29_01385 PF07638 ECF sigma factor APY29_01390 PF00069 Protein kinase domain APY29_01390 PF13424 Tetratricopeptide repeat APY29_01395 PF05488 PAAR motif APY29_01400 PF00515 Tetratricopeptide repeat APY29_01400 PF13489 Methyltransferase domain APY29_01405 PF05954 Phage late control gene D protein (GPD) APY29_01415 PF00498 FHA domain APY29_01420 PF05936 APY29_01420 APY29_01425 PF00691 OmpA family APY29_01425 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) APY29_01435 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) APY29_01440 PF13672 Protein phosphatase 2C APY29_01445 PF00069 Protein kinase domain APY29_01445 PF03781 Sulfatase-modifying factor enzyme 1 APY29_01455 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APY29_01455 PF08479 POTRA domain, ShlB-type APY29_01460 PF05860 haemagglutination activity domain APY29_01465 PF06812 APY29_01465 APY29_01470 PF11191 Protein of unknown function (DUF2782) APY29_01475 PF00476 DNA polymerase family A APY29_01475 PF01367 5'-3' exonuclease, C-terminal SAM fold APY29_01475 PF01612 3'-5' exonuclease APY29_01475 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APY29_01485 PF01218 Coproporphyrinogen III oxidase APY29_01500 PF00326 Prolyl oligopeptidase family APY29_01500 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_01505 PF00501 AMP-binding enzyme APY29_01520 PF01494 FAD binding domain APY29_01525 PF00550 Phosphopantetheine attachment site APY29_01535 PF01553 Acyltransferase APY29_01540 PF07977 FabA-like domain APY29_01545 PF03279 APY29_01545 APY29_01565 PF03176 MMPL family APY29_01580 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_01590 PF01494 FAD binding domain APY29_01595 PF00535 Glycosyl transferase family 2 APY29_01600 PF13723 APY29_01600 APY29_01605 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_01605 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_01610 PF05166 YcgL domain APY29_01615 PF00023 Ankyrin repeat APY29_01615 PF12796 Ankyrin repeats (3 copies) APY29_01625 PF00723 Glycosyl hydrolases family 15 APY29_01630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APY29_01630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APY29_01635 PF00999 Sodium/hydrogen exchanger family APY29_01635 PF02254 TrkA-N domain APY29_01640 PF00194 Eukaryotic-type carbonic anhydrase APY29_01645 PF00571 CBS domain APY29_01645 PF01769 Divalent cation transporter APY29_01645 PF03448 MgtE intracellular N domain APY29_01650 PF13302 Acetyltransferase (GNAT) domain APY29_01650 PF13380 CoA binding domain APY29_01650 PF13549 ATP-grasp domain APY29_01650 PF13607 Succinyl-CoA ligase like flavodoxin domain APY29_01655 PF04332 APY29_01655 APY29_01660 PF00317 Ribonucleotide reductase, all-alpha domain APY29_01660 PF02867 Ribonucleotide reductase, barrel domain APY29_01665 PF00268 Ribonucleotide reductase, small chain APY29_01670 PF00258 Flavodoxin APY29_01675 PF00085 Thioredoxin APY29_01685 PF03061 Thioesterase superfamily APY29_01695 PF02558 Ketopantoate reductase PanE/ApbA APY29_01695 PF08546 Ketopantoate reductase PanE/ApbA C terminal APY29_01705 PF01061 APY29_01705 APY29_01710 PF00005 ABC transporter APY29_01715 PF00175 Oxidoreductase NAD-binding domain APY29_01715 PF00970 Oxidoreductase FAD-binding domain APY29_01720 PF01965 DJ-1/PfpI family APY29_01720 PF12833 Helix-turn-helix domain APY29_01725 PF11287 APY29_01725 APY29_01730 PF00593 TonB dependent receptor APY29_01730 PF07715 TonB-dependent Receptor Plug Domain APY29_01740 PF01545 Cation efflux family APY29_01745 PF02583 Metal-sensitive transcriptional repressor APY29_01760 PF01381 Helix-turn-helix APY29_01765 PF08386 TAP-like protein APY29_01770 PF00005 ABC transporter APY29_01775 PF12679 APY29_01775 APY29_01780 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_01785 PF04820 Tryptophan halogenase APY29_01790 PF13621 Cupin-like domain APY29_01795 PF07277 APY29_01795 APY29_01800 PF00593 TonB dependent receptor APY29_01800 PF07715 TonB-dependent Receptor Plug Domain APY29_01810 PF00043 Glutathione S-transferase, C-terminal domain APY29_01810 PF02798 Glutathione S-transferase, N-terminal domain APY29_01815 PF00326 Prolyl oligopeptidase family APY29_01815 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_01825 PF01527 Transposase APY29_01830 PF00665 Integrase core domain APY29_01855 PF00490 Delta-aminolevulinic acid dehydratase APY29_01865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_01865 PF03466 LysR substrate binding domain APY29_01870 PF01223 DNA/RNA non-specific endonuclease APY29_01875 PF00175 Oxidoreductase NAD-binding domain APY29_01875 PF00258 Flavodoxin APY29_01875 PF03929 APY29_01875 APY29_01880 PF07676 WD40-like Beta Propeller Repeat APY29_01885 PF01488 Shikimate / quinate 5-dehydrogenase APY29_01885 PF08501 Shikimate dehydrogenase substrate binding domain APY29_01900 PF13307 Helicase C-terminal domain APY29_01905 PF00199 Catalase APY29_01905 PF06628 Catalase-related immune-responsive APY29_01910 PF12796 Ankyrin repeats (3 copies) APY29_01920 PF01207 Dihydrouridine synthase (Dus) APY29_01930 PF00072 Response regulator receiver domain APY29_01930 PF00486 Transcriptional regulatory protein, C terminal APY29_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_01940 PF08811 APY29_01940 APY29_01945 PF07394 APY29_01945 APY29_01950 PF06167 Glucose-regulated metallo-peptidase M90 APY29_01960 PF02237 Biotin protein ligase C terminal domain APY29_01960 PF03099 Biotin/lipoate A/B protein ligase family APY29_01960 PF08279 HTH domain APY29_01965 PF03309 Type III pantothenate kinase APY29_01970 PF05036 Sporulation related domain APY29_01985 PF00665 Integrase core domain APY29_01990 PF01527 Transposase APY29_01995 PF13356 Domain of unknown function (DUF4102) APY29_02000 PF02223 Thymidylate kinase APY29_02020 PF03259 Roadblock/LC7 domain APY29_02025 PF00491 Arginase family APY29_02030 PF08085 APY29_02030 APY29_02035 PF08085 APY29_02035 APY29_02040 PF05532 CsbD-like APY29_02045 PF00579 tRNA synthetases class I (W and Y) APY29_02050 PF00753 Metallo-beta-lactamase superfamily APY29_02055 PF02225 PA domain APY29_02055 PF04389 Peptidase family M28 APY29_02065 PF00892 EamA-like transporter family APY29_02070 PF00892 EamA-like transporter family APY29_02075 PF12697 Alpha/beta hydrolase family APY29_02080 PF02687 APY29_02080 APY29_02080 PF12704 MacB-like periplasmic core domain APY29_02085 PF02687 APY29_02085 APY29_02085 PF12704 MacB-like periplasmic core domain APY29_02090 PF00005 ABC transporter APY29_02095 PF16576 APY29_02095 APY29_02100 PF07730 Histidine kinase APY29_02105 PF00072 Response regulator receiver domain APY29_02105 PF00196 Bacterial regulatory proteins, luxR family APY29_02110 PF06283 Trehalose utilisation APY29_02115 PF01292 Prokaryotic cytochrome b561 APY29_02120 PF00199 Catalase APY29_02125 PF04542 Sigma-70 region 2 APY29_02125 PF08281 Sigma-70, region 4 APY29_02135 PF00883 Cytosol aminopeptidase family, catalytic domain APY29_02140 PF13419 Haloacid dehalogenase-like hydrolase APY29_02145 PF01594 APY29_02145 APY29_02165 PF13180 PDZ domain APY29_02165 PF13365 Trypsin-like peptidase domain APY29_02175 PF11769 APY29_02175 APY29_02185 PF00512 His Kinase A (phospho-acceptor) domain APY29_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_02190 PF00072 Response regulator receiver domain APY29_02190 PF00486 Transcriptional regulatory protein, C terminal APY29_02195 PF01370 NAD dependent epimerase/dehydratase family APY29_02195 PF08338 Domain of unknown function (DUF1731) APY29_02200 PF13628 APY29_02200 APY29_02220 PF11379 APY29_02220 APY29_02225 PF00326 Prolyl oligopeptidase family APY29_02235 PF01139 tRNA-splicing ligase RtcB APY29_02240 PF01145 SPFH domain / Band 7 family APY29_02255 PF00440 Bacterial regulatory proteins, tetR family APY29_02260 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_02260 PF00175 Oxidoreductase NAD-binding domain APY29_02260 PF00970 Oxidoreductase FAD-binding domain APY29_02265 PF00487 APY29_02265 APY29_02270 PF00563 EAL domain APY29_02270 PF12792 APY29_02270 APY29_02280 PF08212 Lipocalin-like domain APY29_02285 PF01078 Magnesium chelatase, subunit ChlI APY29_02285 PF13335 APY29_02285 APY29_02285 PF13541 Subunit ChlI of Mg-chelatase APY29_02290 PF04380 APY29_02290 APY29_02295 PF00543 Nitrogen regulatory protein P-II APY29_02300 PF02838 Glycosyl hydrolase family 20, domain 2 APY29_02300 PF07555 beta-N-acetylglucosaminidase APY29_02305 PF01636 Phosphotransferase enzyme family APY29_02320 PF09851 APY29_02320 APY29_02320 PF14470 Bacterial PH domain APY29_02325 PF01564 Spermine/spermidine synthase APY29_02325 PF17284 APY29_02325 APY29_02330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY29_02340 PF00501 AMP-binding enzyme APY29_02340 PF00550 Phosphopantetheine attachment site APY29_02340 PF00668 Condensation domain APY29_02340 PF00975 Thioesterase domain APY29_02340 PF13193 AMP-binding enzyme C-terminal domain APY29_02345 PF03033 Glycosyltransferase family 28 N-terminal domain APY29_02355 PF00106 short chain dehydrogenase APY29_02365 PF05036 Sporulation related domain APY29_02370 PF00750 tRNA synthetases class I (R) APY29_02370 PF03485 Arginyl tRNA synthetase N terminal domain APY29_02370 PF05746 DALR anticodon binding domain APY29_02375 PF04002 RadC-like JAB domain APY29_02380 PF02441 Flavoprotein APY29_02380 PF04127 DNA / pantothenate metabolism flavoprotein APY29_02385 PF00692 dUTPase APY29_02400 PF07578 Lipid A Biosynthesis N-terminal domain APY29_02405 PF00535 Glycosyl transferase family 2 APY29_02410 PF01370 NAD dependent epimerase/dehydratase family APY29_02415 PF11731 APY29_02415 APY29_02420 PF02195 ParB-like nuclease domain APY29_02425 PF13614 AAA domain APY29_02435 PF00156 Phosphoribosyl transferase domain APY29_02440 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_02445 PF07690 Major Facilitator Superfamily APY29_02455 PF03702 Uncharacterised protein family (UPF0075) APY29_02460 PF01551 Peptidase family M23 APY29_02460 PF04225 Opacity-associated protein A LysM-like domain APY29_02465 PF00579 tRNA synthetases class I (W and Y) APY29_02500 PF00171 Aldehyde dehydrogenase family APY29_02500 PF01619 Proline dehydrogenase APY29_02500 PF14850 DNA-binding domain of Proline dehydrogenase APY29_02505 PF10003 APY29_02505 APY29_02510 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APY29_02510 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APY29_02515 PF00115 Cytochrome C and Quinol oxidase polypeptide I APY29_02520 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APY29_02525 PF00510 Cytochrome c oxidase subunit III APY29_02530 PF11137 APY29_02530 APY29_02535 PF02104 APY29_02535 APY29_02545 PF02628 APY29_02545 APY29_02550 PF01040 UbiA prenyltransferase family APY29_02555 PF13899 Thioredoxin-like APY29_02560 PF13593 SBF-like CPA transporter family (DUF4137) APY29_02565 PF01807 CHC2 zinc finger APY29_02565 PF08275 DNA primase catalytic core, N-terminal domain APY29_02565 PF08278 DNA primase DnaG DnaB-binding APY29_02565 PF10410 DnaB-helicase binding domain of primase APY29_02565 PF13155 Toprim-like APY29_02570 PF03631 APY29_02570 APY29_02575 PF09424 Yqey-like protein APY29_02580 PF01165 Ribosomal protein S21 APY29_02585 PF00814 Glycoprotease family APY29_02590 PF02152 Dihydroneopterin aldolase APY29_02595 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_02595 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_02595 PF14310 Fibronectin type III-like domain APY29_02600 PF07995 Glucose / Sorbosone dehydrogenase APY29_02605 PF05360 APY29_02605 APY29_02620 PF13520 Amino acid permease APY29_02630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_02630 PF13378 Enolase C-terminal domain-like APY29_02635 PF00877 NlpC/P60 family APY29_02635 PF12913 SH3 domain of the SH3b1 type APY29_02635 PF12914 SH3 domain of SH3b2 type APY29_02640 PF01510 N-acetylmuramoyl-L-alanine amidase APY29_02645 PF01427 D-ala-D-ala dipeptidase APY29_02650 PF14255 APY29_02650 APY29_02660 PF13202 EF hand APY29_02665 PF13202 EF hand APY29_02670 PF13419 Haloacid dehalogenase-like hydrolase APY29_02685 PF07063 Domain of unknown function (DUF1338) APY29_02690 PF00873 AcrB/AcrD/AcrF family APY29_02695 PF00873 AcrB/AcrD/AcrF family APY29_02700 PF16576 APY29_02700 APY29_02705 PF01546 Peptidase family M20/M25/M40 APY29_02705 PF07687 Peptidase dimerisation domain APY29_02710 PF14489 QueF-like protein APY29_02710 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APY29_02715 PF01476 LysM domain APY29_02725 PF03971 Monomeric isocitrate dehydrogenase APY29_02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_02735 PF03466 LysR substrate binding domain APY29_02740 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) APY29_02750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_02750 PF07497 Rho termination factor, RNA-binding domain APY29_02750 PF07498 Rho termination factor, N-terminal domain APY29_02755 PF00085 Thioredoxin APY29_02760 PF00270 DEAD/DEAH box helicase APY29_02760 PF00271 Helicase conserved C-terminal domain APY29_02760 PF12300 APY29_02760 APY29_02765 PF00005 ABC transporter APY29_02775 PF00072 Response regulator receiver domain APY29_02780 PF03167 Uracil DNA glycosylase superfamily APY29_02785 PF00140 Sigma-70 factor, region 1 APY29_02785 PF04542 Sigma-70 region 2 APY29_02785 PF04545 Sigma-70, region 4 APY29_02790 PF03458 APY29_02790 APY29_02795 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_02805 PF01936 NYN domain APY29_02805 PF12872 OST-HTH/LOTUS domain APY29_02810 PF00043 Glutathione S-transferase, C-terminal domain APY29_02810 PF13417 Glutathione S-transferase, N-terminal domain APY29_02815 PF00270 DEAD/DEAH box helicase APY29_02815 PF00271 Helicase conserved C-terminal domain APY29_02825 PF11304 APY29_02825 APY29_02830 PF12412 APY29_02830 APY29_02835 PF01554 MatE APY29_02840 PF01343 Peptidase family S49 APY29_02850 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_02865 PF01300 Telomere recombination APY29_02870 PF01131 DNA topoisomerase APY29_02870 PF01751 Toprim domain APY29_02870 PF13368 APY29_02870 APY29_02875 PF06271 APY29_02875 APY29_02875 PF14237 APY29_02875 APY29_02880 PF00114 Pilin (bacterial filament) APY29_02880 PF14237 APY29_02880 APY29_02885 PF04361 APY29_02885 APY29_02890 PF02481 DNA recombination-mediator protein A APY29_02895 PF01476 LysM domain APY29_02900 PF01327 Polypeptide deformylase APY29_02905 PF00551 Formyl transferase APY29_02905 PF02911 Formyl transferase, C-terminal domain APY29_02910 PF01029 NusB family APY29_02910 PF01189 NOL1/NOP2/sun family APY29_02915 PF13231 APY29_02915 APY29_02920 PF04932 APY29_02920 APY29_02925 PF00535 Glycosyl transferase family 2 APY29_02930 PF02350 UDP-N-acetylglucosamine 2-epimerase APY29_02935 PF03703 APY29_02935 APY29_02940 PF03703 APY29_02940 APY29_02945 PF00925 GTP cyclohydrolase II APY29_02955 PF13420 Acetyltransferase (GNAT) domain APY29_02960 PF03279 APY29_02960 APY29_02965 PF02580 D-Tyr-tRNA(Tyr) deacylase APY29_02970 PF00140 Sigma-70 factor, region 1 APY29_02970 PF03979 Sigma-70 factor, region 1 APY29_02970 PF04539 Sigma-70 region 3 APY29_02970 PF04542 Sigma-70 region 2 APY29_02970 PF04545 Sigma-70, region 4 APY29_02970 PF04546 Sigma-70, non-essential region APY29_02985 PF00589 Phage integrase family APY29_02985 PF13356 Domain of unknown function (DUF4102) APY29_02990 PF12728 Helix-turn-helix domain APY29_03005 PF04326 Divergent AAA domain APY29_03005 PF13749 ATP-dependent DNA helicase recG C-terminal APY29_03010 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03015 PF01555 DNA methylase APY29_03020 PF00176 SNF2 family N-terminal domain APY29_03020 PF00271 Helicase conserved C-terminal domain APY29_03025 PF08665 APY29_03025 APY29_03035 PF01527 Transposase APY29_03040 PF00665 Integrase core domain APY29_03045 PF11903 APY29_03045 APY29_03050 PF00557 Metallopeptidase family M24 APY29_03080 PF07866 Protein of unknown function (DUF1653) APY29_03090 PF03795 YCII-related domain APY29_03095 PF02525 Flavodoxin-like fold APY29_03100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_03100 PF03466 LysR substrate binding domain APY29_03105 PF12697 Alpha/beta hydrolase family APY29_03115 PF00246 Zinc carboxypeptidase APY29_03120 PF00005 ABC transporter APY29_03125 PF12040 APY29_03125 APY29_03125 PF12679 APY29_03125 APY29_03130 PF12040 APY29_03130 APY29_03135 PF00593 TonB dependent receptor APY29_03135 PF07715 TonB-dependent Receptor Plug Domain APY29_03140 PF11445 APY29_03140 APY29_03145 PF00691 OmpA family APY29_03150 PF05650 APY29_03150 APY29_03155 PF11828 APY29_03155 APY29_03170 PF03692 APY29_03170 APY29_03180 PF00107 Zinc-binding dehydrogenase APY29_03180 PF08240 Alcohol dehydrogenase GroES-like domain APY29_03180 PF13823 Alcohol dehydrogenase GroES-associated APY29_03185 PF13628 APY29_03185 APY29_03190 PF12244 APY29_03190 APY29_03195 PF00005 ABC transporter APY29_03195 PF00664 ABC transporter transmembrane region APY29_03205 PF03275 UDP-galactopyranose mutase APY29_03205 PF13450 NAD(P)-binding Rossmann-like domain APY29_03210 PF13692 Glycosyl transferases group 1 APY29_03215 PF16363 APY29_03215 APY29_03220 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_03235 PF02322 APY29_03235 APY29_03240 PF01654 APY29_03240 APY29_03250 PF00072 Response regulator receiver domain APY29_03250 PF00158 Sigma-54 interaction domain APY29_03250 PF02954 Bacterial regulatory protein, Fis family APY29_03260 PF00072 Response regulator receiver domain APY29_03285 PF05067 Manganese containing catalase APY29_03290 PF05974 Domain of unknown function (DUF892) APY29_03300 PF01527 Transposase APY29_03305 PF00665 Integrase core domain APY29_03305 PF13276 APY29_03305 APY29_03310 PF01266 FAD dependent oxidoreductase APY29_03315 PF06580 APY29_03315 APY29_03320 PF00072 Response regulator receiver domain APY29_03320 PF04397 LytTr DNA-binding domain APY29_03330 PF13520 Amino acid permease APY29_03345 PF09995 APY29_03345 APY29_03350 PF01431 Peptidase family M13 APY29_03350 PF05649 Peptidase family M13 APY29_03355 PF00535 Glycosyl transferase family 2 APY29_03360 PF00248 Aldo/keto reductase family APY29_03365 PF03358 NADPH-dependent FMN reductase APY29_03370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_03370 PF03466 LysR substrate binding domain APY29_03375 PF07681 APY29_03375 APY29_03380 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY29_03385 PF04055 Radical SAM superfamily APY29_03390 PF03167 Uracil DNA glycosylase superfamily APY29_03390 PF13566 APY29_03390 APY29_03395 PF02469 Fasciclin domain APY29_03400 PF00999 Sodium/hydrogen exchanger family APY29_03405 PF00005 ABC transporter APY29_03410 PF01061 APY29_03410 APY29_03415 PF11730 APY29_03415 APY29_03425 PF13223 APY29_03425 APY29_03435 PF00691 OmpA family APY29_03435 PF13677 APY29_03435 APY29_03440 PF01618 APY29_03440 APY29_03445 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme APY29_03450 PF01641 SelR domain APY29_03460 PF01037 AsnC family APY29_03460 PF13404 AsnC-type helix-turn-helix domain APY29_03465 PF01266 FAD dependent oxidoreductase APY29_03470 PF00842 Alanine racemase, C-terminal domain APY29_03470 PF01168 Alanine racemase, N-terminal domain APY29_03475 PF11454 APY29_03475 APY29_03490 PF00072 Response regulator receiver domain APY29_03490 PF00512 His Kinase A (phospho-acceptor) domain APY29_03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03490 PF08448 PAS fold APY29_03490 PF13426 PAS domain APY29_03495 PF11607 Protein of unknown function (DUF3247) APY29_03500 PF07995 Glucose / Sorbosone dehydrogenase APY29_03510 PF05175 Methyltransferase small domain APY29_03515 PF00849 RNA pseudouridylate synthase APY29_03520 PF13419 Haloacid dehalogenase-like hydrolase APY29_03525 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_03535 PF07209 APY29_03535 APY29_03540 PF12146 Putative lysophospholipase APY29_03545 PF00072 Response regulator receiver domain APY29_03545 PF00512 His Kinase A (phospho-acceptor) domain APY29_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03555 PF04461 Protein of unknown function (DUF520) APY29_03560 PF00892 EamA-like transporter family APY29_03565 PF00005 ABC transporter APY29_03565 PF09383 NIL domain APY29_03570 PF00528 Binding-protein-dependent transport system inner membrane component APY29_03575 PF03180 NLPA lipoprotein APY29_03585 PF01527 Transposase APY29_03590 PF00665 Integrase core domain APY29_03605 PF03922 OmpW family APY29_03610 PF03167 Uracil DNA glycosylase superfamily APY29_03615 PF11101 APY29_03615 APY29_03620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY29_03620 PF00364 Biotin-requiring enzyme APY29_03620 PF02817 e3 binding domain APY29_03630 PF00364 Biotin-requiring enzyme APY29_03630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY29_03630 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_03650 PF00119 ATP synthase A chain APY29_03655 PF00137 ATP synthase subunit C APY29_03660 PF00430 ATP synthase B/B' CF(0) APY29_03665 PF00213 ATP synthase delta (OSCP) subunit APY29_03670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_03670 PF00306 ATP synthase alpha/beta chain, C terminal domain APY29_03670 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY29_03675 PF00231 ATP synthase APY29_03680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_03680 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY29_03685 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APY29_03685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APY29_03690 PF01817 Chorismate mutase type II APY29_03695 PF04138 APY29_03695 APY29_03700 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_03700 PF12804 MobA-like NTP transferase domain APY29_03700 PF14602 Hexapeptide repeat of succinyl-transferase APY29_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_03710 PF00072 Response regulator receiver domain APY29_03710 PF00158 Sigma-54 interaction domain APY29_03710 PF02954 Bacterial regulatory protein, Fis family APY29_03720 PF02687 APY29_03720 APY29_03720 PF12704 MacB-like periplasmic core domain APY29_03725 PF02687 APY29_03725 APY29_03725 PF12704 MacB-like periplasmic core domain APY29_03730 PF00005 ABC transporter APY29_03735 PF13437 HlyD family secretion protein APY29_03735 PF13533 Biotin-lipoyl like APY29_03740 PF01380 SIS domain APY29_03740 PF13522 Glutamine amidotransferase domain APY29_03755 PF00665 Integrase core domain APY29_03755 PF13276 APY29_03755 APY29_03760 PF01527 Transposase APY29_03765 PF01471 Putative peptidoglycan binding domain APY29_03775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_03785 PF00394 Multicopper oxidase APY29_03785 PF07731 Multicopper oxidase APY29_03785 PF07732 Multicopper oxidase APY29_03795 PF00291 Pyridoxal-phosphate dependent enzyme APY29_03800 PF01432 Peptidase family M3 APY29_03810 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_03810 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_03815 PF07977 FabA-like domain APY29_03820 PF00817 impB/mucB/samB family APY29_03820 PF11799 impB/mucB/samB family C-terminal domain APY29_03825 PF13419 Haloacid dehalogenase-like hydrolase APY29_03830 PF00593 TonB dependent receptor APY29_03830 PF07715 TonB-dependent Receptor Plug Domain APY29_03835 PF00756 Putative esterase APY29_03840 PF04994 TfoX C-terminal domain APY29_03845 PF13185 GAF domain APY29_03850 PF13500 AAA domain APY29_03855 PF09361 APY29_03855 APY29_03860 PF01242 6-pyruvoyl tetrahydropterin synthase APY29_03865 PF00593 TonB dependent receptor APY29_03865 PF07715 TonB-dependent Receptor Plug Domain APY29_03870 PF02225 PA domain APY29_03870 PF04253 Transferrin receptor-like dimerisation domain APY29_03870 PF04389 Peptidase family M28 APY29_03875 PF00270 DEAD/DEAH box helicase APY29_03875 PF00271 Helicase conserved C-terminal domain APY29_03880 PF01557 Fumarylacetoacetate (FAA) hydrolase family APY29_03885 PF13417 Glutathione S-transferase, N-terminal domain APY29_03890 PF00437 Type II/IV secretion system protein APY29_03895 PF14346 Domain of unknown function (DUF4398) APY29_03905 PF04325 Protein of unknown function (DUF465) APY29_03910 PF00291 Pyridoxal-phosphate dependent enzyme APY29_03910 PF00571 CBS domain APY29_03915 PF01053 Cys/Met metabolism PLP-dependent enzyme APY29_03925 PF00534 Glycosyl transferases group 1 APY29_03925 PF13439 Glycosyltransferase Family 4 APY29_03930 PF01061 APY29_03930 APY29_03935 PF00005 ABC transporter APY29_03935 PF14524 Wzt C-terminal domain APY29_03940 PF01636 Phosphotransferase enzyme family APY29_03940 PF13847 Methyltransferase domain APY29_03945 PF00534 Glycosyl transferases group 1 APY29_03945 PF13579 Glycosyl transferase 4-like domain APY29_03950 PF16363 APY29_03950 APY29_03955 PF01370 NAD dependent epimerase/dehydratase family APY29_03960 PF01527 Transposase APY29_03965 PF00665 Integrase core domain APY29_03975 PF00665 Integrase core domain APY29_03980 PF01527 Transposase APY29_03985 PF05598 APY29_03985 APY29_03995 PF01593 Flavin containing amine oxidoreductase APY29_04000 PF04138 APY29_04000 APY29_04005 PF00535 Glycosyl transferase family 2 APY29_04015 PF00766 Electron transfer flavoprotein FAD-binding domain APY29_04015 PF01012 Electron transfer flavoprotein domain APY29_04020 PF01012 Electron transfer flavoprotein domain APY29_04025 PF16363 APY29_04025 APY29_04030 PF00483 Nucleotidyl transferase APY29_04035 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APY29_04040 PF04321 RmlD substrate binding domain APY29_04045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY29_04045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY29_04045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY29_04050 PF00483 Nucleotidyl transferase APY29_04050 PF01050 Mannose-6-phosphate isomerase APY29_04055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY29_04055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY29_04055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY29_04055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY29_04060 PF01144 Coenzyme A transferase APY29_04065 PF01144 Coenzyme A transferase APY29_04070 PF01946 Thi4 family APY29_04070 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase APY29_04075 PF13532 2OG-Fe(II) oxygenase superfamily APY29_04080 PF03886 Protein of unknown function (DUF330) APY29_04085 PF02470 APY29_04085 APY29_04090 PF00005 ABC transporter APY29_04095 PF02405 APY29_04095 APY29_04100 PF06738 APY29_04100 APY29_04100 PF12821 APY29_04100 APY29_04105 PF00816 H-NS histone family APY29_04110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY29_04110 PF03129 Anticodon binding domain APY29_04110 PF04073 Aminoacyl-tRNA editing domain APY29_04115 PF13511 APY29_04115 APY29_04120 PF01066 CDP-alcohol phosphatidyltransferase APY29_04130 PF00583 Acetyltransferase (GNAT) family APY29_04135 PF00544 Pectate lyase APY29_04140 PF01464 Transglycosylase SLT domain APY29_04140 PF14718 Soluble lytic murein transglycosylase L domain APY29_04150 PF00133 tRNA synthetases class I (I, L, M and V) APY29_04150 PF08264 Anticodon-binding domain of tRNA APY29_04150 PF10458 Valyl tRNA synthetase tRNA binding arm APY29_04155 PF04364 DNA polymerase III chi subunit, HolC APY29_04170 PF03739 APY29_04170 APY29_04175 PF03739 APY29_04175 APY29_04185 PF06271 APY29_04185 APY29_04190 PF00589 Phage integrase family APY29_04190 PF02899 Phage integrase, N-terminal SAM-like domain APY29_04195 PF10411 Disulfide bond isomerase protein N-terminus APY29_04195 PF13098 Thioredoxin-like domain APY29_04200 PF02769 AIR synthase related protein, C-terminal domain APY29_04200 PF13507 CobB/CobQ-like glutamine amidotransferase domain APY29_04205 PF03895 YadA-like C-terminal region APY29_04205 PF05658 Head domain of trimeric autotransporter adhesin APY29_04205 PF05662 Coiled stalk of trimeric autotransporter adhesin APY29_04210 PF00082 Subtilase family APY29_04210 PF04151 Bacterial pre-peptidase C-terminal domain APY29_04215 PF05658 Head domain of trimeric autotransporter adhesin APY29_04215 PF05662 Coiled stalk of trimeric autotransporter adhesin APY29_04215 PF13018 APY29_04215 APY29_04220 PF00082 Subtilase family APY29_04220 PF04151 Bacterial pre-peptidase C-terminal domain APY29_04225 PF00437 Type II/IV secretion system protein APY29_04225 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_04230 PF00482 Type II secretion system (T2SS), protein F APY29_04235 PF08334 Type II secretion system (T2SS), protein G APY29_04240 PF12019 Type II transport protein GspH APY29_04245 PF07963 Prokaryotic N-terminal methylation motif APY29_04255 PF03934 Type II secretion system (T2SS), protein K APY29_04260 PF05137 APY29_04260 APY29_04265 PF10741 APY29_04265 APY29_04275 PF00263 APY29_04275 APY29_04275 PF03958 Bacterial type II/III secretion system short domain APY29_04280 PF01527 Transposase APY29_04285 PF13276 APY29_04285 APY29_04285 PF13683 APY29_04285 APY29_04295 PF00392 Bacterial regulatory proteins, gntR family APY29_04295 PF07702 UTRA domain APY29_04300 PF04973 APY29_04300 APY29_04310 PF01636 Phosphotransferase enzyme family APY29_04315 PF00535 Glycosyl transferase family 2 APY29_04325 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_04325 PF13641 Glycosyltransferase like family 2 APY29_04345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APY29_04360 PF00535 Glycosyl transferase family 2 APY29_04360 PF03552 Cellulose synthase APY29_04360 PF07238 PilZ domain APY29_04365 PF03170 Bacterial cellulose synthase subunit APY29_04370 PF01270 Glycosyl hydrolases family 8 APY29_04375 PF05420 APY29_04375 APY29_04375 PF13432 Tetratricopeptide repeat APY29_04375 PF14559 Tetratricopeptide repeat APY29_04395 PF03960 ArsC family APY29_04400 PF01327 Polypeptide deformylase APY29_04405 PF02645 Uncharacterised protein, DegV family COG1307 APY29_04415 PF09284 Rhamnogalacturonase B, N-terminal APY29_04415 PF14683 Polysaccharide lyase family 4, domain III APY29_04415 PF14686 Polysaccharide lyase family 4, domain II APY29_04425 PF01979 Amidohydrolase family APY29_04430 PF01979 Amidohydrolase family APY29_04435 PF06041 Bacterial protein of unknown function (DUF924) APY29_04445 PF00462 Glutaredoxin APY29_04445 PF00581 Rhodanese-like domain APY29_04450 PF01522 Polysaccharide deacetylase APY29_04455 PF00593 TonB dependent receptor APY29_04455 PF07715 TonB-dependent Receptor Plug Domain APY29_04460 PF08242 Methyltransferase domain APY29_04465 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_04470 PF00155 Aminotransferase class I and II APY29_04475 PF00005 ABC transporter APY29_04475 PF00664 ABC transporter transmembrane region APY29_04475 PF03412 Peptidase C39 family APY29_04480 PF13437 HlyD family secretion protein APY29_04480 PF13533 Biotin-lipoyl like APY29_04490 PF10512 Cell division cycle-associated protein 8 APY29_04495 PF13276 APY29_04495 APY29_04495 PF13683 APY29_04495 APY29_04500 PF01527 Transposase APY29_04505 PF01527 Transposase APY29_04510 PF00665 Integrase core domain APY29_04520 PF13683 APY29_04520 APY29_04525 PF01527 Transposase APY29_04535 PF03193 Protein of unknown function, DUF258 APY29_04540 PF08014 APY29_04540 APY29_04545 PF01965 DJ-1/PfpI family APY29_04550 PF00128 Alpha amylase, catalytic domain APY29_04555 PF00593 TonB dependent receptor APY29_04555 PF07715 TonB-dependent Receptor Plug Domain APY29_04560 PF07690 Major Facilitator Superfamily APY29_04565 PF00356 Bacterial regulatory proteins, lacI family APY29_04565 PF13377 Periplasmic binding protein-like domain APY29_04570 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_04575 PF03600 Citrate transporter APY29_04580 PF07396 Phosphate-selective porin O and P APY29_04585 PF00072 Response regulator receiver domain APY29_04585 PF00486 Transcriptional regulatory protein, C terminal APY29_04590 PF00512 His Kinase A (phospho-acceptor) domain APY29_04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_04590 PF08521 APY29_04590 APY29_04595 PF13531 Bacterial extracellular solute-binding protein APY29_04600 PF00072 Response regulator receiver domain APY29_04600 PF00196 Bacterial regulatory proteins, luxR family APY29_04605 PF11512 Agrobacterium tumefaciens protein Atu4866 APY29_04610 PF12680 SnoaL-like domain APY29_04615 PF00248 Aldo/keto reductase family APY29_04625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_04625 PF03466 LysR substrate binding domain APY29_04630 PF13531 Bacterial extracellular solute-binding protein APY29_04635 PF00083 Sugar (and other) transporter APY29_04640 PF00072 Response regulator receiver domain APY29_04640 PF00512 His Kinase A (phospho-acceptor) domain APY29_04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_04640 PF02743 Cache domain APY29_04640 PF12860 APY29_04640 APY29_04650 PF07396 Phosphate-selective porin O and P APY29_04655 PF00375 Sodium:dicarboxylate symporter family APY29_04660 PF00390 Malic enzyme, N-terminal domain APY29_04660 PF01515 Phosphate acetyl/butaryl transferase APY29_04660 PF03949 Malic enzyme, NAD binding domain APY29_04670 PF10276 Zinc-finger domain APY29_04675 PF00534 Glycosyl transferases group 1 APY29_04675 PF13439 Glycosyltransferase Family 4 APY29_04680 PF04932 APY29_04680 APY29_04685 PF03279 APY29_04685 APY29_04690 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APY29_04695 PF02321 Outer membrane efflux protein APY29_04700 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) APY29_04705 PF00440 Bacterial regulatory proteins, tetR family APY29_04705 PF14246 AefR-like transcriptional repressor, C-terminal region APY29_04710 PF00990 GGDEF domain APY29_04710 PF07494 Two component regulator propeller APY29_04710 PF07495 Y_Y_Y domain APY29_04715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_04715 PF03466 LysR substrate binding domain APY29_04720 PF00330 Aconitase family (aconitate hydratase) APY29_04725 PF00694 Aconitase C-terminal domain APY29_04730 PF00180 Isocitrate/isopropylmalate dehydrogenase APY29_04735 PF00682 HMGL-like APY29_04735 PF08502 LeuA allosteric (dimerisation) domain APY29_04740 PF00291 Pyridoxal-phosphate dependent enzyme APY29_04745 PF13710 ACT domain APY29_04750 PF00205 Thiamine pyrophosphate enzyme, central domain APY29_04750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APY29_04750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APY29_04755 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APY29_04755 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain APY29_04760 PF01019 Gamma-glutamyltranspeptidase APY29_04765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_04770 PF00593 TonB dependent receptor APY29_04770 PF07715 TonB-dependent Receptor Plug Domain APY29_04775 PF01964 ThiC family APY29_04775 PF13667 ThiC-associated domain APY29_04780 PF00486 Transcriptional regulatory protein, C terminal APY29_04780 PF07676 WD40-like Beta Propeller Repeat APY29_04785 PF12833 Helix-turn-helix domain APY29_04790 PF00593 TonB dependent receptor APY29_04790 PF07715 TonB-dependent Receptor Plug Domain APY29_04795 PF08668 HDOD domain APY29_04800 PF00719 Inorganic pyrophosphatase APY29_04810 PF03030 Inorganic H+ pyrophosphatase APY29_04815 PF01527 Transposase APY29_04820 PF00665 Integrase core domain APY29_04820 PF13276 APY29_04820 APY29_04830 PF00365 Phosphofructokinase APY29_04835 PF00406 Adenylate kinase APY29_04840 PF01225 Mur ligase family, catalytic domain APY29_04840 PF02875 Mur ligase family, glutamate ligase domain APY29_04840 PF08245 Mur ligase middle domain APY29_04845 PF02190 ATP-dependent protease La (LON) domain APY29_04850 PF01062 APY29_04850 APY29_04855 PF01569 PAP2 superfamily APY29_04855 PF09335 APY29_04855 APY29_04855 PF14067 APY29_04855 APY29_04865 PF00106 short chain dehydrogenase APY29_04870 PF00520 Ion transport protein APY29_04875 PF00202 Aminotransferase class-III APY29_04885 PF00593 TonB dependent receptor APY29_04885 PF07715 TonB-dependent Receptor Plug Domain APY29_04890 PF01593 Flavin containing amine oxidoreductase APY29_04895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APY29_04900 PF01042 Endoribonuclease L-PSP APY29_04905 PF00155 Aminotransferase class I and II APY29_04910 PF00127 Copper binding proteins, plastocyanin/azurin family APY29_04920 PF00202 Aminotransferase class-III APY29_04925 PF07715 TonB-dependent Receptor Plug Domain APY29_04925 PF13620 Carboxypeptidase regulatory-like domain APY29_04930 PF02581 Thiamine monophosphate synthase/TENI APY29_04935 PF00301 Rubredoxin APY29_04940 PF13369 APY29_04940 APY29_04940 PF13371 Tetratricopeptide repeat APY29_04945 PF02643 Uncharacterized ACR, COG1430 APY29_04950 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APY29_04955 PF01878 EVE domain APY29_04960 PF01812 5-formyltetrahydrofolate cyclo-ligase family APY29_04965 PF05164 Cell division protein ZapA APY29_04975 PF03695 Uncharacterised protein family (UPF0149) APY29_04980 PF00557 Metallopeptidase family M24 APY29_04980 PF05195 Aminopeptidase P, N-terminal domain APY29_04990 PF00557 Metallopeptidase family M24 APY29_04995 PF07238 PilZ domain APY29_05000 PF07793 APY29_05000 APY29_05005 PF04055 Radical SAM superfamily APY29_05005 PF06969 HemN C-terminal domain APY29_05010 PF01725 Ham1 family APY29_05015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_05020 PF01138 3' exoribonuclease family, domain 1 APY29_05020 PF03725 3' exoribonuclease family, domain 2 APY29_05025 PF03755 APY29_05025 APY29_05025 PF08340 APY29_05025 APY29_05030 PF00625 Guanylate kinase APY29_05035 PF01192 RNA polymerase Rpb6 APY29_05040 PF02824 TGS domain APY29_05040 PF04607 Region found in RelA / SpoT proteins APY29_05040 PF13291 ACT domain APY29_05040 PF13328 HD domain APY29_05045 PF01042 Endoribonuclease L-PSP APY29_05050 PF00270 DEAD/DEAH box helicase APY29_05050 PF00271 Helicase conserved C-terminal domain APY29_05050 PF17191 APY29_05050 APY29_05055 PF01156 Inosine-uridine preferring nucleoside hydrolase APY29_05060 PF01197 Ribosomal protein L31 APY29_05065 PF00285 Citrate synthase APY29_05075 PF00905 Penicillin binding protein transpeptidase domain APY29_05075 PF00912 Transglycosylase APY29_05075 PF17092 APY29_05075 APY29_05080 PF11104 Type IV pilus assembly protein PilM; APY29_05085 PF05137 APY29_05085 APY29_05090 PF04350 Pilus assembly protein, PilO APY29_05095 PF04351 Pilus assembly protein, PilP APY29_05105 PF07726 ATPase family associated with various cellular activities (AAA) APY29_05110 PF01882 APY29_05110 APY29_05115 PF14316 APY29_05115 APY29_05120 PF00092 von Willebrand factor type A domain APY29_05125 PF00515 Tetratricopeptide repeat APY29_05125 PF13519 von Willebrand factor type A domain APY29_05135 PF00375 Sodium:dicarboxylate symporter family APY29_05140 PF00456 Transketolase, thiamine diphosphate binding domain APY29_05140 PF02779 Transketolase, pyrimidine binding domain APY29_05140 PF02780 Transketolase, C-terminal domain APY29_05160 PF00593 TonB dependent receptor APY29_05160 PF07715 TonB-dependent Receptor Plug Domain APY29_05175 PF01527 Transposase APY29_05180 PF00665 Integrase core domain APY29_05190 PF16670 APY29_05190 APY29_05195 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APY29_05200 PF03965 Penicillinase repressor APY29_05205 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_05205 PF05569 BlaR1 peptidase M56 APY29_05215 PF00005 ABC transporter APY29_05220 PF00528 Binding-protein-dependent transport system inner membrane component APY29_05225 PF13531 Bacterial extracellular solute-binding protein APY29_05230 PF00753 Metallo-beta-lactamase superfamily APY29_05235 PF02265 S1/P1 Nuclease APY29_05240 PF03922 OmpW family APY29_05245 PF03922 OmpW family APY29_05250 PF08332 Calcium/calmodulin dependent protein kinase II Association APY29_05255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APY29_05255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APY29_05270 PF13163 APY29_05270 APY29_05275 PF00162 Phosphoglycerate kinase APY29_05285 PF00224 Pyruvate kinase, barrel domain APY29_05285 PF02887 Pyruvate kinase, alpha/beta domain APY29_05290 PF00274 Fructose-bisphosphate aldolase class-I APY29_05295 PF01661 Macro domain APY29_05300 PF04191 Phospholipid methyltransferase APY29_05305 PF00291 Pyridoxal-phosphate dependent enzyme APY29_05310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY29_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_05315 PF03466 LysR substrate binding domain APY29_05330 PF01590 GAF domain APY29_05330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_05335 PF11162 APY29_05335 APY29_05340 PF00593 TonB dependent receptor APY29_05340 PF07715 TonB-dependent Receptor Plug Domain APY29_05345 PF03929 APY29_05345 APY29_05350 PF01507 Phosphoadenosine phosphosulfate reductase family APY29_05355 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APY29_05355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APY29_05360 PF00175 Oxidoreductase NAD-binding domain APY29_05360 PF00258 Flavodoxin APY29_05360 PF00667 FAD binding domain APY29_05365 PF01507 Phosphoadenosine phosphosulfate reductase family APY29_05370 PF00009 Elongation factor Tu GTP binding domain APY29_05370 PF01583 Adenylylsulphate kinase APY29_05375 PF16576 APY29_05375 APY29_05380 PF00873 AcrB/AcrD/AcrF family APY29_05390 PF01527 Transposase APY29_05395 PF00665 Integrase core domain APY29_05395 PF13276 APY29_05395 APY29_05405 PF07791 APY29_05405 APY29_05410 PF01433 Peptidase family M1 APY29_05410 PF11838 ERAP1-like C-terminal domain APY29_05415 PF13302 Acetyltransferase (GNAT) domain APY29_05420 PF00588 SpoU rRNA Methylase family APY29_05420 PF08032 RNA 2'-O ribose methyltransferase substrate binding APY29_05425 PF00135 Carboxylesterase family APY29_05430 PF03080 APY29_05430 APY29_05435 PF10566 Glycoside hydrolase 97 APY29_05435 PF14508 Glycosyl-hydrolase 97 N-terminal APY29_05435 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation APY29_05440 PF00703 Glycosyl hydrolases family 2 APY29_05440 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_05440 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_05440 PF13385 Concanavalin A-like lectin/glucanases superfamily APY29_05445 PF00593 TonB dependent receptor APY29_05445 PF07715 TonB-dependent Receptor Plug Domain APY29_05450 PF00356 Bacterial regulatory proteins, lacI family APY29_05450 PF13377 Periplasmic binding protein-like domain APY29_05460 PF04389 Peptidase family M28 APY29_05465 PF01741 Large-conductance mechanosensitive channel, MscL APY29_05480 PF00355 Rieske [2Fe-2S] domain APY29_05485 PF02080 TrkA-C domain APY29_05485 PF03600 Citrate transporter APY29_05490 PF02390 Putative methyltransferase APY29_05495 PF05690 Thiazole biosynthesis protein ThiG APY29_05500 PF02597 ThiS family APY29_05505 PF00657 GDSL-like Lipase/Acylhydrolase APY29_05505 PF03797 Autotransporter beta-domain APY29_05515 PF00589 Phage integrase family APY29_05520 PF01609 Transposase DDE domain APY29_05520 PF05598 APY29_05520 APY29_05525 PF01527 Transposase APY29_05530 PF00665 Integrase core domain APY29_05535 PF01527 Transposase APY29_05555 PF00565 Staphylococcal nuclease homologue APY29_05565 PF00816 H-NS histone family APY29_05570 PF00128 Alpha amylase, catalytic domain APY29_05570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_05575 PF08443 RimK-like ATP-grasp domain APY29_05585 PF00072 Response regulator receiver domain APY29_05585 PF00486 Transcriptional regulatory protein, C terminal APY29_05590 PF00512 His Kinase A (phospho-acceptor) domain APY29_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_05595 PF08845 APY29_05595 APY29_05600 PF01527 Transposase APY29_05605 PF13276 APY29_05605 APY29_05605 PF13683 APY29_05605 APY29_05610 PF00665 Integrase core domain APY29_05615 PF01527 Transposase APY29_05625 PF01121 Dephospho-CoA kinase APY29_05630 PF01478 Type IV leader peptidase family APY29_05630 PF06750 APY29_05630 APY29_05635 PF00482 Type II secretion system (T2SS), protein F APY29_05640 PF00114 Pilin (bacterial filament) APY29_05640 PF07963 Prokaryotic N-terminal methylation motif APY29_05645 PF00437 Type II/IV secretion system protein APY29_05645 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_05655 PF00072 Response regulator receiver domain APY29_05655 PF00158 Sigma-54 interaction domain APY29_05655 PF02954 Bacterial regulatory protein, Fis family APY29_05665 PF00512 His Kinase A (phospho-acceptor) domain APY29_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_05670 PF00549 CoA-ligase APY29_05670 PF08442 ATP-grasp domain APY29_05675 PF00549 CoA-ligase APY29_05675 PF02629 CoA binding domain APY29_05685 PF04480 Protein of unknown function (DUF559) APY29_05690 PF00795 Carbon-nitrogen hydrolase APY29_05690 PF02540 NAD synthase APY29_05700 PF13525 Outer membrane lipoprotein APY29_05705 PF00849 RNA pseudouridylate synthase APY29_05710 PF02578 Multi-copper polyphenol oxidoreductase laccase APY29_05715 PF13761 APY29_05715 APY29_05720 PF04134 APY29_05720 APY29_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_05730 PF01011 PQQ enzyme repeat APY29_05730 PF13360 PQQ-like domain APY29_05735 PF00982 Glycosyltransferase family 20 APY29_05740 PF00723 Glycosyl hydrolases family 15 APY29_05745 PF02358 Trehalose-phosphatase APY29_05750 PF00593 TonB dependent receptor APY29_05750 PF07715 TonB-dependent Receptor Plug Domain APY29_05755 PF12098 APY29_05755 APY29_05775 PF11219 APY29_05775 APY29_05780 PF14497 Glutathione S-transferase, C-terminal domain APY29_05785 PF01541 GIY-YIG catalytic domain APY29_05790 PF00593 TonB dependent receptor APY29_05790 PF07715 TonB-dependent Receptor Plug Domain APY29_05800 PF00248 Aldo/keto reductase family APY29_05805 PF09084 NMT1/THI5 like APY29_05810 PF00528 Binding-protein-dependent transport system inner membrane component APY29_05815 PF00005 ABC transporter APY29_05820 PF00004 ATPase family associated with various cellular activities (AAA) APY29_05820 PF02861 Clp amino terminal domain APY29_05820 PF07724 AAA domain (Cdc48 subfamily) APY29_05820 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_05825 PF00593 TonB dependent receptor APY29_05825 PF07715 TonB-dependent Receptor Plug Domain APY29_05840 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APY29_05840 PF12557 Cob(I)alamin adenosyltransferase N terminal APY29_05845 PF03186 APY29_05845 APY29_05855 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_05855 PF07685 CobB/CobQ-like glutamine amidotransferase domain APY29_05860 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APY29_05865 PF02277 Phosphoribosyltransferase APY29_05870 PF00300 Histidine phosphatase superfamily (branch 1) APY29_05875 PF02654 APY29_05875 APY29_05885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APY29_05885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY29_05890 PF04183 IucA / IucC family APY29_05890 PF06276 Ferric iron reductase FhuF-like transporter APY29_05895 PF07690 Major Facilitator Superfamily APY29_05900 PF04183 IucA / IucC family APY29_05900 PF06276 Ferric iron reductase FhuF-like transporter APY29_05905 PF02655 ATP-grasp domain APY29_05910 PF00593 TonB dependent receptor APY29_05910 PF07715 TonB-dependent Receptor Plug Domain APY29_05915 PF03328 HpcH/HpaI aldolase/citrate lyase family APY29_05935 PF00999 Sodium/hydrogen exchanger family APY29_05935 PF02254 TrkA-N domain APY29_05945 PF00593 TonB dependent receptor APY29_05945 PF07715 TonB-dependent Receptor Plug Domain APY29_05955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_05965 PF00593 TonB dependent receptor APY29_05965 PF07715 TonB-dependent Receptor Plug Domain APY29_05975 PF14317 APY29_05975 APY29_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_05980 PF03466 LysR substrate binding domain APY29_05985 PF13354 Beta-lactamase enzyme family APY29_05995 PF00593 TonB dependent receptor APY29_05995 PF07715 TonB-dependent Receptor Plug Domain APY29_06000 PF07690 Major Facilitator Superfamily APY29_06005 PF09723 APY29_06005 APY29_06010 PF11218 APY29_06010 APY29_06015 PF00152 tRNA synthetases class II (D, K and N) APY29_06015 PF01336 OB-fold nucleic acid binding domain APY29_06015 PF02938 GAD domain APY29_06020 PF00583 Acetyltransferase (GNAT) family APY29_06025 PF12697 Alpha/beta hydrolase family APY29_06030 PF01709 Transcriptional regulator APY29_06035 PF02075 Crossover junction endodeoxyribonuclease RuvC APY29_06040 PF01330 RuvA N terminal domain APY29_06040 PF07499 RuvA, C-terminal domain APY29_06040 PF14520 Helix-hairpin-helix domain APY29_06045 PF02705 APY29_06045 APY29_06055 PF05491 Holliday junction DNA helicase ruvB C-terminus APY29_06055 PF05496 Holliday junction DNA helicase ruvB N-terminus APY29_06060 PF03061 Thioesterase superfamily APY29_06065 PF01618 APY29_06065 APY29_06070 PF02472 Biopolymer transport protein ExbD/TolR APY29_06075 PF13103 TonB C terminal APY29_06080 PF04052 TolB amino-terminal domain APY29_06080 PF07676 WD40-like Beta Propeller Repeat APY29_06085 PF00691 OmpA family APY29_06090 PF13525 Outer membrane lipoprotein APY29_06090 PF16331 APY29_06090 APY29_06095 PF04055 Radical SAM superfamily APY29_06095 PF13394 4Fe-4S single cluster domain APY29_06105 PF06508 Queuosine biosynthesis protein QueC APY29_06110 PF07536 APY29_06110 APY29_06110 PF08448 PAS fold APY29_06115 PF00072 Response regulator receiver domain APY29_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_06120 PF03466 LysR substrate binding domain APY29_06125 PF01810 APY29_06125 APY29_06130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_06130 PF00672 HAMP domain APY29_06130 PF12729 APY29_06130 APY29_06145 PF01479 S4 domain APY29_06155 PF00072 Response regulator receiver domain APY29_06165 PF00270 DEAD/DEAH box helicase APY29_06165 PF00271 Helicase conserved C-terminal domain APY29_06165 PF00570 HRDC domain APY29_06165 PF09382 RQC domain APY29_06165 PF16124 APY29_06165 APY29_06170 PF00210 Ferritin-like domain APY29_06175 PF00270 DEAD/DEAH box helicase APY29_06175 PF00271 Helicase conserved C-terminal domain APY29_06175 PF04408 Helicase associated domain (HA2) APY29_06175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APY29_06175 PF11898 APY29_06175 APY29_06180 PF00593 TonB dependent receptor APY29_06180 PF07715 TonB-dependent Receptor Plug Domain APY29_06185 PF02685 Glucokinase APY29_06190 PF10142 PhoPQ-activated pathogenicity-related protein APY29_06200 PF04055 Radical SAM superfamily APY29_06200 PF13186 Iron-sulfur cluster-binding domain APY29_06200 PF13353 4Fe-4S single cluster domain APY29_06205 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APY29_06210 PF03070 TENA/THI-4/PQQC family APY29_06215 PF12706 Beta-lactamase superfamily domain APY29_06220 PF02824 TGS domain APY29_06220 PF04607 Region found in RelA / SpoT proteins APY29_06220 PF13291 ACT domain APY29_06220 PF13328 HD domain APY29_06230 PF00535 Glycosyl transferase family 2 APY29_06230 PF13692 Glycosyl transferases group 1 APY29_06235 PF00905 Penicillin binding protein transpeptidase domain APY29_06235 PF00912 Transglycosylase APY29_06235 PF14814 Bifunctional transglycosylase second domain APY29_06245 PF13307 Helicase C-terminal domain APY29_06250 PF00814 Glycoprotease family APY29_06255 PF03747 ADP-ribosylglycohydrolase APY29_06260 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_06265 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APY29_06265 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APY29_06270 PF00072 Response regulator receiver domain APY29_06275 PF00072 Response regulator receiver domain APY29_06280 PF01584 CheW-like domain APY29_06285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_06295 PF01339 CheB methylesterase APY29_06300 PF01584 CheW-like domain APY29_06305 PF13302 Acetyltransferase (GNAT) domain APY29_06315 PF01112 Asparaginase APY29_06320 PF03932 CutC family APY29_06325 PF13855 Leucine rich repeat APY29_06330 PF13088 BNR repeat-like domain APY29_06335 PF11747 APY29_06335 APY29_06350 PF01301 Glycosyl hydrolases family 35 APY29_06355 PF07971 Glycosyl hydrolase family 92 APY29_06360 PF06824 Protein of unknown function (DUF1237) APY29_06365 PF01527 Transposase APY29_06370 PF00665 Integrase core domain APY29_06390 PF00665 Integrase core domain APY29_06390 PF13276 APY29_06390 APY29_06395 PF01527 Transposase APY29_06405 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_06405 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_06405 PF07691 PA14 domain APY29_06405 PF14310 Fibronectin type III-like domain APY29_06410 PF00703 Glycosyl hydrolases family 2 APY29_06410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_06415 PF00728 Glycosyl hydrolase family 20, catalytic domain APY29_06415 PF02838 Glycosyl hydrolase family 20, domain 2 APY29_06415 PF13290 APY29_06415 APY29_06420 PF00704 Glycosyl hydrolases family 18 APY29_06425 PF01120 Alpha-L-fucosidase APY29_06425 PF16757 APY29_06425 APY29_06430 PF00593 TonB dependent receptor APY29_06430 PF07715 TonB-dependent Receptor Plug Domain APY29_06440 PF02685 Glucokinase APY29_06445 PF04452 RNA methyltransferase APY29_06450 PF00202 Aminotransferase class-III APY29_06455 PF00293 NUDIX domain APY29_06460 PF00459 Inositol monophosphatase family APY29_06465 PF03819 MazG nucleotide pyrophosphohydrolase domain APY29_06470 PF02694 APY29_06470 APY29_06480 PF01571 Aminomethyltransferase folate-binding domain APY29_06480 PF08669 Glycine cleavage T-protein C-terminal barrel domain APY29_06485 PF01597 Glycine cleavage H-protein APY29_06500 PF00144 Beta-lactamase APY29_06505 PF07690 Major Facilitator Superfamily APY29_06510 PF06993 APY29_06510 APY29_06515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_06515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_06515 PF09317 APY29_06515 APY29_06520 PF12146 Putative lysophospholipase APY29_06525 PF00440 Bacterial regulatory proteins, tetR family APY29_06535 PF00665 Integrase core domain APY29_06540 PF01527 Transposase APY29_06545 PF13469 Sulfotransferase family APY29_06550 PF13276 APY29_06550 APY29_06550 PF13683 APY29_06550 APY29_06555 PF01527 Transposase APY29_06560 PF01527 Transposase APY29_06565 PF00665 Integrase core domain APY29_06565 PF13276 APY29_06565 APY29_06570 PF00593 TonB dependent receptor APY29_06570 PF07715 TonB-dependent Receptor Plug Domain APY29_06580 PF01430 Hsp33 protein APY29_06585 PF00912 Transglycosylase APY29_06590 PF00535 Glycosyl transferase family 2 APY29_06595 PF00571 CBS domain APY29_06600 PF05170 APY29_06600 APY29_06605 PF03006 APY29_06605 APY29_06610 PF00009 Elongation factor Tu GTP binding domain APY29_06610 PF16658 APY29_06610 APY29_06615 PF01551 Peptidase family M23 APY29_06620 PF00561 alpha/beta hydrolase fold APY29_06625 PF01053 Cys/Met metabolism PLP-dependent enzyme APY29_06630 PF00742 Homoserine dehydrogenase APY29_06630 PF03447 Homoserine dehydrogenase, NAD binding domain APY29_06640 PF03313 APY29_06640 APY29_06640 PF03315 Serine dehydratase beta chain APY29_06645 PF05768 Glutaredoxin-like domain (DUF836) APY29_06650 PF04264 YceI-like domain APY29_06655 PF01292 Prokaryotic cytochrome b561 APY29_06660 PF04264 YceI-like domain APY29_06665 PF00072 Response regulator receiver domain APY29_06665 PF00512 His Kinase A (phospho-acceptor) domain APY29_06665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_06665 PF07494 Two component regulator propeller APY29_06665 PF07495 Y_Y_Y domain APY29_06675 PF00072 Response regulator receiver domain APY29_06675 PF00512 His Kinase A (phospho-acceptor) domain APY29_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_06675 PF07494 Two component regulator propeller APY29_06675 PF07495 Y_Y_Y domain APY29_06680 PF00072 Response regulator receiver domain APY29_06680 PF00512 His Kinase A (phospho-acceptor) domain APY29_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_06680 PF07494 Two component regulator propeller APY29_06680 PF07495 Y_Y_Y domain APY29_06690 PF01208 Uroporphyrinogen decarboxylase (URO-D) APY29_06700 PF01761 3-dehydroquinate synthase APY29_06705 PF01202 Shikimate kinase APY29_06710 PF01243 Pyridoxamine 5'-phosphate oxidase APY29_06710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APY29_06715 PF09938 APY29_06715 APY29_06720 PF04012 APY29_06720 APY29_06725 PF07885 Ion channel APY29_06730 PF10679 APY29_06730 APY29_06735 PF03994 APY29_06735 APY29_06740 PF06693 APY29_06740 APY29_06745 PF03738 Glutathionylspermidine synthase preATP-grasp APY29_06760 PF00665 Integrase core domain APY29_06760 PF13276 APY29_06760 APY29_06765 PF01527 Transposase APY29_06775 PF00376 MerR family regulatory protein APY29_06775 PF09278 MerR, DNA binding APY29_06780 PF01433 Peptidase family M1 APY29_06790 PF00593 TonB dependent receptor APY29_06790 PF07715 TonB-dependent Receptor Plug Domain APY29_06795 PF07277 APY29_06795 APY29_06800 PF13621 Cupin-like domain APY29_06805 PF04820 Tryptophan halogenase APY29_06810 PF12706 Beta-lactamase superfamily domain APY29_06835 PF13520 Amino acid permease APY29_06840 PF00196 Bacterial regulatory proteins, luxR family APY29_06840 PF03472 Autoinducer binding domain APY29_06850 PF00561 alpha/beta hydrolase fold APY29_06860 PF13276 APY29_06860 APY29_06860 PF13683 APY29_06860 APY29_06865 PF01527 Transposase APY29_06875 PF00324 Amino acid permease APY29_06880 PF01244 Membrane dipeptidase (Peptidase family M19) APY29_06885 PF01654 APY29_06885 APY29_06890 PF02322 APY29_06890 APY29_06895 PF00326 Prolyl oligopeptidase family APY29_06900 PF00571 CBS domain APY29_06900 PF01769 Divalent cation transporter APY29_06900 PF03448 MgtE intracellular N domain APY29_06910 PF00381 PTS HPr component phosphorylation site APY29_06915 PF03610 PTS system fructose IIA component APY29_06920 PF03668 APY29_06920 APY29_06925 PF02603 HPr Serine kinase N terminus APY29_06925 PF07475 HPr Serine kinase C-terminal domain APY29_06930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APY29_06935 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APY29_06940 PF00309 APY29_06940 APY29_06940 PF04552 Sigma-54, DNA binding domain APY29_06940 PF04963 Sigma-54 factor, core binding domain APY29_06945 PF00005 ABC transporter APY29_06945 PF12399 Branched-chain amino acid ATP-binding cassette transporter APY29_06950 PF03968 OstA-like protein APY29_06955 PF06835 Lipopolysaccharide-assembly, LptC-related APY29_06960 PF08282 haloacid dehalogenase-like hydrolase APY29_06965 PF00571 CBS domain APY29_06965 PF01380 SIS domain APY29_06970 PF01722 BolA-like protein APY29_06975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APY29_06985 PF11306 Protein of unknown function (DUF3108) APY29_06990 PF11306 Protein of unknown function (DUF3108) APY29_06995 PF00551 Formyl transferase APY29_07000 PF09997 APY29_07000 APY29_07010 PF00586 AIR synthase related protein, N-terminal domain APY29_07010 PF02769 AIR synthase related protein, C-terminal domain APY29_07015 PF09839 APY29_07015 APY29_07020 PF01594 APY29_07020 APY29_07025 PF00308 Bacterial dnaA protein APY29_07030 PF00483 Nucleotidyl transferase APY29_07035 PF01636 Phosphotransferase enzyme family APY29_07040 PF04226 APY29_07040 APY29_07045 PF01546 Peptidase family M20/M25/M40 APY29_07045 PF07687 Peptidase dimerisation domain APY29_07050 PF12836 Helix-hairpin-helix motif APY29_07055 PF05962 HutD APY29_07060 PF13202 EF hand APY29_07060 PF13499 EF-hand domain pair APY29_07065 PF00175 Oxidoreductase NAD-binding domain APY29_07065 PF00258 Flavodoxin APY29_07070 PF02424 ApbE family APY29_07075 PF10670 APY29_07075 APY29_07080 PF10029 APY29_07080 APY29_07085 PF16357 APY29_07085 APY29_07090 PF08238 Sel1 repeat APY29_07095 PF13640 2OG-Fe(II) oxygenase superfamily APY29_07100 PF00593 TonB dependent receptor APY29_07100 PF07715 TonB-dependent Receptor Plug Domain APY29_07105 PF00355 Rieske [2Fe-2S] domain APY29_07110 PF13673 Acetyltransferase (GNAT) domain APY29_07115 PF00266 Aminotransferase class-V APY29_07120 PF01458 Uncharacterized protein family (UPF0051) APY29_07125 PF00005 ABC transporter APY29_07130 PF01458 Uncharacterized protein family (UPF0051) APY29_07135 PF02082 Transcriptional regulator APY29_07140 PF00856 SET domain APY29_07145 PF01965 DJ-1/PfpI family APY29_07150 PF07273 Protein of unknown function (DUF1439) APY29_07160 PF12977 Domain of Unknown Function with PDB structure (DUF3861) APY29_07165 PF01551 Peptidase family M23 APY29_07170 PF00216 Bacterial DNA-binding protein APY29_07175 PF03807 NADP oxidoreductase coenzyme F420-dependent APY29_07175 PF14748 Pyrroline-5-carboxylate reductase dimerisation APY29_07180 PF01168 Alanine racemase, N-terminal domain APY29_07185 PF00437 Type II/IV secretion system protein APY29_07190 PF00437 Type II/IV secretion system protein APY29_07195 PF02588 APY29_07195 APY29_07200 PF01904 Protein of unknown function DUF72 APY29_07205 PF03352 Methyladenine glycosylase APY29_07215 PF02622 Uncharacterized ACR, COG1678 APY29_07220 PF03652 Uncharacterised protein family (UPF0081) APY29_07225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APY29_07225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APY29_07230 PF02566 OsmC-like protein APY29_07235 PF05433 APY29_07235 APY29_07240 PF02567 Phenazine biosynthesis-like protein APY29_07245 PF02567 Phenazine biosynthesis-like protein APY29_07250 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APY29_07250 PF00696 Amino acid kinase family APY29_07250 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY29_07265 PF02875 Mur ligase family, glutamate ligase domain APY29_07265 PF08245 Mur ligase middle domain APY29_07270 PF01738 Dienelactone hydrolase family APY29_07275 PF00348 Polyprenyl synthetase APY29_07280 PF00436 Single-strand binding protein family APY29_07290 PF00107 Zinc-binding dehydrogenase APY29_07290 PF08240 Alcohol dehydrogenase GroES-like domain APY29_07295 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_07295 PF01799 [2Fe-2S] binding domain APY29_07300 PF00941 FAD binding domain in molybdopterin dehydrogenase APY29_07300 PF03450 CO dehydrogenase flavoprotein C-terminal domain APY29_07305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY29_07305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APY29_07310 PF02625 XdhC and CoxI family APY29_07310 PF13478 XdhC Rossmann domain APY29_07335 PF05684 APY29_07335 APY29_07340 PF11187 Protein of unknown function (DUF2974) APY29_07345 PF12796 Ankyrin repeats (3 copies) APY29_07350 PF13419 Haloacid dehalogenase-like hydrolase APY29_07355 PF04328 APY29_07355 APY29_07360 PF02554 APY29_07360 APY29_07360 PF13722 APY29_07360 APY29_07365 PF02678 Pirin APY29_07365 PF05726 Pirin C-terminal cupin domain APY29_07370 PF02566 OsmC-like protein APY29_07380 PF02678 Pirin APY29_07380 PF05726 Pirin C-terminal cupin domain APY29_07390 PF04493 Endonuclease V APY29_07395 PF00300 Histidine phosphatase superfamily (branch 1) APY29_07405 PF01431 Peptidase family M13 APY29_07405 PF05649 Peptidase family M13 APY29_07410 PF13091 PLD-like domain APY29_07415 PF00072 Response regulator receiver domain APY29_07415 PF01339 CheB methylesterase APY29_07420 PF01739 CheR methyltransferase, SAM binding domain APY29_07420 PF03705 CheR methyltransferase, all-alpha domain APY29_07425 PF00072 Response regulator receiver domain APY29_07425 PF00563 EAL domain APY29_07430 PF01584 CheW-like domain APY29_07435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_07440 PF01584 CheW-like domain APY29_07440 PF01627 Hpt domain APY29_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_07440 PF02895 Signal transducing histidine kinase, homodimeric domain APY29_07445 PF13466 STAS domain APY29_07450 PF08845 APY29_07450 APY29_07455 PF07791 APY29_07455 APY29_07470 PF00270 DEAD/DEAH box helicase APY29_07470 PF00271 Helicase conserved C-terminal domain APY29_07470 PF02559 CarD-like/TRCF domain APY29_07470 PF03461 TRCF domain APY29_07475 PF13302 Acetyltransferase (GNAT) domain APY29_07480 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ APY29_07485 PF00072 Response regulator receiver domain APY29_07485 PF00486 Transcriptional regulatory protein, C terminal APY29_07490 PF00512 His Kinase A (phospho-acceptor) domain APY29_07490 PF00672 HAMP domain APY29_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_07500 PF00112 Papain family cysteine protease APY29_07505 PF06123 APY29_07505 APY29_07520 PF00795 Carbon-nitrogen hydrolase APY29_07525 PF12275 APY29_07525 APY29_07530 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY29_07535 PF01475 Ferric uptake regulator family APY29_07540 PF00440 Bacterial regulatory proteins, tetR family APY29_07540 PF14246 AefR-like transcriptional repressor, C-terminal region APY29_07545 PF00529 HlyD family secretion protein APY29_07545 PF16576 APY29_07545 APY29_07550 PF00873 AcrB/AcrD/AcrF family APY29_07555 PF02321 Outer membrane efflux protein APY29_07560 PF00440 Bacterial regulatory proteins, tetR family APY29_07560 PF14246 AefR-like transcriptional repressor, C-terminal region APY29_07565 PF00248 Aldo/keto reductase family APY29_07570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_07570 PF03466 LysR substrate binding domain APY29_07575 PF07883 Cupin domain APY29_07580 PF06719 APY29_07580 APY29_07580 PF12833 Helix-turn-helix domain APY29_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_07590 PF03466 LysR substrate binding domain APY29_07595 PF07690 Major Facilitator Superfamily APY29_07610 PF00082 Subtilase family APY29_07610 PF01483 Proprotein convertase P-domain APY29_07620 PF00082 Subtilase family APY29_07620 PF01483 Proprotein convertase P-domain APY29_07625 PF00593 TonB dependent receptor APY29_07625 PF07715 TonB-dependent Receptor Plug Domain APY29_07630 PF00593 TonB dependent receptor APY29_07630 PF07715 TonB-dependent Receptor Plug Domain APY29_07635 PF03203 APY29_07635 APY29_07640 PF17067 APY29_07640 APY29_07645 PF00107 Zinc-binding dehydrogenase APY29_07645 PF08240 Alcohol dehydrogenase GroES-like domain APY29_07650 PF00654 Voltage gated chloride channel APY29_07655 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase APY29_07660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APY29_07660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APY29_07680 PF13211 APY29_07680 APY29_07685 PF01124 MAPEG family APY29_07695 PF13275 S4 domain APY29_07705 PF04542 Sigma-70 region 2 APY29_07705 PF08281 Sigma-70, region 4 APY29_07710 PF00270 DEAD/DEAH box helicase APY29_07710 PF00271 Helicase conserved C-terminal domain APY29_07710 PF03880 DbpA RNA binding domain APY29_07715 PF00563 EAL domain APY29_07715 PF00990 GGDEF domain APY29_07715 PF08447 PAS fold APY29_07720 PF00849 RNA pseudouridylate synthase APY29_07720 PF01479 S4 domain APY29_07725 PF00990 GGDEF domain APY29_07725 PF01590 GAF domain APY29_07730 PF00892 EamA-like transporter family APY29_07735 PF01904 Protein of unknown function DUF72 APY29_07745 PF03737 Demethylmenaquinone methyltransferase APY29_07750 PF00144 Beta-lactamase APY29_07750 PF11954 APY29_07750 APY29_07755 PF00999 Sodium/hydrogen exchanger family APY29_07765 PF00072 Response regulator receiver domain APY29_07765 PF00486 Transcriptional regulatory protein, C terminal APY29_07770 PF02321 Outer membrane efflux protein APY29_07775 PF06629 APY29_07775 APY29_07780 PF16576 APY29_07780 APY29_07785 PF00873 AcrB/AcrD/AcrF family APY29_07790 PF07929 Plasmid pRiA4b ORF-3-like protein APY29_07795 PF00005 ABC transporter APY29_07795 PF00664 ABC transporter transmembrane region APY29_07800 PF05960 Bacterial protein of unknown function (DUF885) APY29_07810 PF14257 APY29_07810 APY29_07830 PF00892 EamA-like transporter family APY29_07835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APY29_07840 PF04070 APY29_07840 APY29_07860 PF12760 Transposase zinc-ribbon domain APY29_07860 PF12762 APY29_07860 APY29_07870 PF14539 Domain of unknown function (DUF4442) APY29_07880 PF00085 Thioredoxin APY29_07880 PF14559 Tetratricopeptide repeat APY29_07880 PF14561 Tetratricopeptide repeat APY29_07885 PF06197 APY29_07885 APY29_07890 PF00133 tRNA synthetases class I (I, L, M and V) APY29_07890 PF08264 Anticodon-binding domain of tRNA APY29_07890 PF13603 Leucyl-tRNA synthetase, Domain 2 APY29_07895 PF04390 Lipopolysaccharide-assembly APY29_07900 PF06144 DNA polymerase III, delta subunit APY29_07905 PF01467 Cytidylyltransferase APY29_07910 PF02410 Oligomerisation domain APY29_07915 PF05787 Bacterial protein of unknown function (DUF839) APY29_07915 PF10518 TAT (twin-arginine translocation) pathway signal sequence APY29_07920 PF02590 Predicted SPOUT methyltransferase APY29_07925 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_07930 PF00593 TonB dependent receptor APY29_07930 PF07715 TonB-dependent Receptor Plug Domain APY29_07930 PF13620 Carboxypeptidase regulatory-like domain APY29_07935 PF04402 Protein of unknown function (DUF541) APY29_07940 PF02545 Maf-like protein APY29_07945 PF10150 Ribonuclease E/G family APY29_07950 PF13116 APY29_07950 APY29_07950 PF13502 APY29_07950 APY29_07960 PF01523 Putative modulator of DNA gyrase APY29_07965 PF04751 Protein of unknown function (DUF615) APY29_07970 PF01523 Putative modulator of DNA gyrase APY29_07975 PF09685 APY29_07975 APY29_07980 PF14521 Lysine-specific metallo-endopeptidase APY29_07985 PF00665 Integrase core domain APY29_07985 PF13276 APY29_07985 APY29_07990 PF01527 Transposase APY29_07995 PF00348 Polyprenyl synthetase APY29_08000 PF02609 Exonuclease VII small subunit APY29_08005 PF01171 PP-loop family APY29_08005 PF09179 TilS substrate binding domain APY29_08005 PF11734 TilS substrate C-terminal domain APY29_08015 PF00245 Alkaline phosphatase APY29_08020 PF00375 Sodium:dicarboxylate symporter family APY29_08025 PF13649 Methyltransferase domain APY29_08030 PF03061 Thioesterase superfamily APY29_08035 PF00877 NlpC/P60 family APY29_08040 PF00877 NlpC/P60 family APY29_08045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_08050 PF04235 APY29_08050 APY29_08055 PF01266 FAD dependent oxidoreductase APY29_08060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY29_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_08065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APY29_08070 PF01694 Rhomboid family APY29_08075 PF01431 Peptidase family M13 APY29_08075 PF05649 Peptidase family M13 APY29_08080 PF01431 Peptidase family M13 APY29_08080 PF05649 Peptidase family M13 APY29_08085 PF01431 Peptidase family M13 APY29_08085 PF05649 Peptidase family M13 APY29_08090 PF01593 Flavin containing amine oxidoreductase APY29_08095 PF00593 TonB dependent receptor APY29_08095 PF07715 TonB-dependent Receptor Plug Domain APY29_08100 PF00593 TonB dependent receptor APY29_08100 PF07715 TonB-dependent Receptor Plug Domain APY29_08105 PF10609 ParA/MinD ATPase like APY29_08110 PF00692 dUTPase APY29_08125 PF01230 HIT domain APY29_08130 PF01738 Dienelactone hydrolase family APY29_08140 PF00665 Integrase core domain APY29_08140 PF13276 APY29_08140 APY29_08145 PF01527 Transposase APY29_08150 PF09664 APY29_08150 APY29_08150 PF11796 APY29_08150 APY29_08155 PF00082 Subtilase family APY29_08160 PF00004 ATPase family associated with various cellular activities (AAA) APY29_08165 PF01381 Helix-turn-helix APY29_08170 PF04014 Antidote-toxin recognition MazE APY29_08175 PF01381 Helix-turn-helix APY29_08180 PF00919 Uncharacterized protein family UPF0004 APY29_08180 PF04055 Radical SAM superfamily APY29_08185 PF01272 Transcription elongation factor, GreA/GreB, C-term APY29_08185 PF03449 Transcription elongation factor, N-terminal APY29_08200 PF00293 NUDIX domain APY29_08210 PF01464 Transglycosylase SLT domain APY29_08210 PF01476 LysM domain APY29_08215 PF01527 Transposase APY29_08220 PF00665 Integrase core domain APY29_08220 PF13276 APY29_08220 APY29_08225 PF02666 APY29_08225 APY29_08230 PF02630 SCO1/SenC APY29_08235 PF05175 Methyltransferase small domain APY29_08240 PF01264 Chorismate synthase APY29_08245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APY29_08245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APY29_08250 PF01118 Semialdehyde dehydrogenase, NAD binding domain APY29_08250 PF02774 Semialdehyde dehydrogenase, dimerisation domain APY29_08265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_08270 PF01416 tRNA pseudouridine synthase APY29_08275 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APY29_08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_08280 PF03466 LysR substrate binding domain APY29_08285 PF00291 Pyridoxal-phosphate dependent enzyme APY29_08295 PF00290 Tryptophan synthase alpha chain APY29_08300 PF01039 Carboxyl transferase domain APY29_08305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY29_08305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY29_08305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY29_08305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY29_08315 PF03171 2OG-Fe(II) oxygenase superfamily APY29_08315 PF14226 non-haem dioxygenase in morphine synthesis N-terminal APY29_08325 PF00563 EAL domain APY29_08325 PF00672 HAMP domain APY29_08325 PF00990 GGDEF domain APY29_08325 PF14827 Sensory domain of two-component sensor kinase APY29_08330 PF11231 APY29_08330 APY29_08335 PF01152 Bacterial-like globin APY29_08340 PF00106 short chain dehydrogenase APY29_08345 PF00121 Triosephosphate isomerase APY29_08350 PF03840 Preprotein translocase SecG subunit APY29_08360 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APY29_08365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APY29_08370 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APY29_08375 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APY29_08380 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APY29_08385 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APY29_08385 PF10531 SLBB domain APY29_08385 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APY29_08390 PF00384 Molybdopterin oxidoreductase APY29_08390 PF01568 Molydopterin dinucleotide binding domain APY29_08390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APY29_08390 PF13510 2Fe-2S iron-sulfur cluster binding domain APY29_08395 PF00146 NADH dehydrogenase APY29_08400 PF12838 4Fe-4S dicluster domain APY29_08405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APY29_08410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APY29_08415 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APY29_08415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY29_08420 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APY29_08425 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APY29_08435 PF02576 Uncharacterised BCR, YhbC family COG0779 APY29_08435 PF17384 APY29_08435 APY29_08440 PF00575 S1 RNA binding domain APY29_08440 PF08529 NusA N-terminal domain APY29_08440 PF13184 NusA-like KH domain APY29_08440 PF14520 Helix-hairpin-helix domain APY29_08445 PF00009 Elongation factor Tu GTP binding domain APY29_08445 PF04760 Translation initiation factor IF-2, N-terminal region APY29_08445 PF08364 APY29_08445 APY29_08445 PF11987 Translation-initiation factor 2 APY29_08450 PF02033 Ribosome-binding factor A APY29_08455 PF01509 TruB family pseudouridylate synthase (N terminal domain) APY29_08455 PF09157 Pseudouridine synthase II TruB, C-terminal APY29_08455 PF16198 APY29_08455 APY29_08460 PF00312 Ribosomal protein S15 APY29_08465 PF00013 KH domain APY29_08465 PF00575 S1 RNA binding domain APY29_08465 PF01138 3' exoribonuclease family, domain 1 APY29_08465 PF03725 3' exoribonuclease family, domain 2 APY29_08465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APY29_08470 PF10030 APY29_08470 APY29_08475 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APY29_08475 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APY29_08480 PF03966 Trm112p-like protein APY29_08485 PF00731 AIR carboxylase APY29_08490 PF02222 ATP-grasp domain APY29_08495 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APY29_08495 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APY29_08500 PF00462 Glutaredoxin APY29_08505 PF00106 short chain dehydrogenase APY29_08510 PF01914 APY29_08510 APY29_08515 PF07715 TonB-dependent Receptor Plug Domain APY29_08515 PF13620 Carboxypeptidase regulatory-like domain APY29_08520 PF03641 Possible lysine decarboxylase APY29_08520 PF11892 Domain of unknown function (DUF3412) APY29_08520 PF14793 Domain of unknown function (DUF4478) APY29_08525 PF07963 Prokaryotic N-terminal methylation motif APY29_08535 PF14341 APY29_08535 APY29_08540 PF05567 Neisseria PilC beta-propeller domain APY29_08545 PF07963 Prokaryotic N-terminal methylation motif APY29_08545 PF16732 APY29_08545 APY29_08555 PF12019 Type II transport protein GspH APY29_08560 PF00271 Helicase conserved C-terminal domain APY29_08560 PF02151 UvrB/uvrC motif APY29_08560 PF04851 Type III restriction enzyme, res subunit APY29_08560 PF12344 Ultra-violet resistance protein B APY29_08575 PF02534 Type IV secretory system Conjugative DNA transfer APY29_08580 PF10671 Toxin co-regulated pilus biosynthesis protein Q APY29_08585 PF04335 VirB8 protein APY29_08590 PF03524 Conjugal transfer protein APY29_08595 PF03743 Bacterial conjugation TrbI-like protein APY29_08600 PF00437 Type II/IV secretion system protein APY29_08605 PF01464 Transglycosylase SLT domain APY29_08610 PF04956 APY29_08610 APY29_08615 PF05101 APY29_08615 APY29_08620 PF03135 APY29_08620 APY29_08630 PF04610 APY29_08630 APY29_08640 PF01471 Putative peptidoglycan binding domain APY29_08645 PF04610 APY29_08645 APY29_08655 PF01527 Transposase APY29_08660 PF01527 Transposase APY29_08665 PF00665 Integrase core domain APY29_08675 PF10566 Glycoside hydrolase 97 APY29_08675 PF14508 Glycosyl-hydrolase 97 N-terminal APY29_08675 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation APY29_08680 PF06202 Amylo-alpha-1,6-glucosidase APY29_08685 PF07690 Major Facilitator Superfamily APY29_08690 PF00128 Alpha amylase, catalytic domain APY29_08695 PF00356 Bacterial regulatory proteins, lacI family APY29_08695 PF13377 Periplasmic binding protein-like domain APY29_08700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY29_08700 PF02824 TGS domain APY29_08700 PF03129 Anticodon binding domain APY29_08700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APY29_08705 PF00707 Translation initiation factor IF-3, C-terminal domain APY29_08705 PF05198 Translation initiation factor IF-3, N-terminal domain APY29_08710 PF01632 Ribosomal protein L35 APY29_08715 PF00453 Ribosomal protein L20 APY29_08720 PF01409 tRNA synthetases class II core domain (F) APY29_08720 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APY29_08725 PF01588 Putative tRNA binding domain APY29_08725 PF03147 Ferredoxin-fold anticodon binding domain APY29_08725 PF03483 B3/4 domain APY29_08725 PF03484 tRNA synthetase B5 domain APY29_08730 PF00216 Bacterial DNA-binding protein APY29_08735 PF13411 MerR HTH family regulatory protein APY29_08745 PF02563 Polysaccharide biosynthesis/export protein APY29_08745 PF10531 SLBB domain APY29_08750 PF02706 Chain length determinant protein APY29_08750 PF13807 APY29_08750 APY29_08755 PF02397 APY29_08755 APY29_08755 PF13727 CoA-binding domain APY29_08765 PF01757 APY29_08765 APY29_08770 PF01757 APY29_08770 APY29_08775 PF00534 Glycosyl transferases group 1 APY29_08775 PF13439 Glycosyltransferase Family 4 APY29_08780 PF13692 Glycosyl transferases group 1 APY29_08785 PF13440 APY29_08785 APY29_08795 PF04230 APY29_08795 APY29_08800 PF03808 APY29_08800 APY29_08805 PF06172 Cupin superfamily (DUF985) APY29_08810 PF01963 APY29_08810 APY29_08815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_08815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_08820 PF00753 Metallo-beta-lactamase superfamily APY29_08825 PF01370 NAD dependent epimerase/dehydratase family APY29_08830 PF13506 Glycosyl transferase family 21 APY29_08840 PF04101 Glycosyltransferase family 28 C-terminal domain APY29_08845 PF02779 Transketolase, pyrimidine binding domain APY29_08845 PF02780 Transketolase, C-terminal domain APY29_08845 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APY29_08850 PF14279 APY29_08850 APY29_08855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_08855 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_08855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_08855 PF12418 APY29_08855 APY29_08855 PF12806 APY29_08855 APY29_08860 PF03168 Late embryogenesis abundant protein APY29_08865 PF08212 Lipocalin-like domain APY29_08885 PF10685 APY29_08885 APY29_08895 PF00072 Response regulator receiver domain APY29_08895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_08895 PF13426 PAS domain APY29_08900 PF04362 Bacterial Fe(2+) trafficking APY29_08905 PF00633 Helix-hairpin-helix motif APY29_08905 PF00730 HhH-GPD superfamily base excision DNA repair protein APY29_08905 PF14815 NUDIX domain APY29_08910 PF00448 SRP54-type protein, GTPase domain APY29_08910 PF02881 SRP54-type protein, helical bundle domain APY29_08915 PF08448 PAS fold APY29_08915 PF12833 Helix-turn-helix domain APY29_08920 PF05544 Proline racemase APY29_08925 PF01266 FAD dependent oxidoreductase APY29_08930 PF13510 2Fe-2S iron-sulfur cluster binding domain APY29_08935 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_08940 PF00701 Dihydrodipicolinate synthetase family APY29_08945 PF00171 Aldehyde dehydrogenase family APY29_08950 PF00557 Metallopeptidase family M24 APY29_08950 PF01321 Creatinase/Prolidase N-terminal domain APY29_08955 PF05960 Bacterial protein of unknown function (DUF885) APY29_08960 PF05960 Bacterial protein of unknown function (DUF885) APY29_08965 PF13520 Amino acid permease APY29_08970 PF00326 Prolyl oligopeptidase family APY29_08970 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_08990 PF00082 Subtilase family APY29_08990 PF09286 Pro-kumamolisin, activation domain APY29_09000 PF00593 TonB dependent receptor APY29_09000 PF07715 TonB-dependent Receptor Plug Domain APY29_09005 PF00754 F5/8 type C domain APY29_09005 PF07532 APY29_09005 APY29_09010 PF04616 Glycosyl hydrolases family 43 APY29_09015 PF00326 Prolyl oligopeptidase family APY29_09015 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_09020 PF00593 TonB dependent receptor APY29_09020 PF07715 TonB-dependent Receptor Plug Domain APY29_09025 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) APY29_09030 PF08845 APY29_09030 APY29_09035 PF00665 Integrase core domain APY29_09040 PF01527 Transposase APY29_09050 PF05593 APY29_09050 APY29_09055 PF00183 Hsp90 protein APY29_09055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_09060 PF03602 Conserved hypothetical protein 95 APY29_09065 PF01467 Cytidylyltransferase APY29_09075 PF00037 4Fe-4S binding domain APY29_09080 PF01019 Gamma-glutamyltranspeptidase APY29_09090 PF00759 Glycosyl hydrolase family 9 APY29_09090 PF02927 N-terminal ig-like domain of cellulase APY29_09095 PF14681 Uracil phosphoribosyltransferase APY29_09100 PF00593 TonB dependent receptor APY29_09100 PF07715 TonB-dependent Receptor Plug Domain APY29_09105 PF02333 Phytase APY29_09110 PF00149 Calcineurin-like phosphoesterase APY29_09110 PF16656 APY29_09110 APY29_09115 PF01527 Transposase APY29_09120 PF00665 Integrase core domain APY29_09120 PF13276 APY29_09120 APY29_09130 PF00202 Aminotransferase class-III APY29_09140 PF01037 AsnC family APY29_09140 PF13412 Winged helix-turn-helix DNA-binding APY29_09145 PF02547 Queuosine biosynthesis protein APY29_09150 PF01702 Queuine tRNA-ribosyltransferase APY29_09155 PF02699 Preprotein translocase subunit APY29_09160 PF02355 Protein export membrane protein APY29_09160 PF07549 SecD/SecF GG Motif APY29_09160 PF13721 SecD export protein N-terminal TM region APY29_09165 PF02355 Protein export membrane protein APY29_09165 PF07549 SecD/SecF GG Motif APY29_09170 PF01527 Transposase APY29_09175 PF00665 Integrase core domain APY29_09185 PF07791 APY29_09185 APY29_09195 PF01527 Transposase APY29_09200 PF00665 Integrase core domain APY29_09200 PF13276 APY29_09200 APY29_09215 PF04966 Carbohydrate-selective porin, OprB family APY29_09220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APY29_09225 PF00294 pfkB family carbohydrate kinase APY29_09230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APY29_09230 PF00381 PTS HPr component phosphorylation site APY29_09230 PF00391 PEP-utilising enzyme, mobile domain APY29_09230 PF02896 PEP-utilising enzyme, TIM barrel domain APY29_09230 PF05524 PEP-utilising enzyme, N-terminal APY29_09235 PF00356 Bacterial regulatory proteins, lacI family APY29_09235 PF13377 Periplasmic binding protein-like domain APY29_09240 PF00873 AcrB/AcrD/AcrF family APY29_09245 PF16576 APY29_09245 APY29_09250 PF00440 Bacterial regulatory proteins, tetR family APY29_09255 PF05088 APY29_09255 APY29_09255 PF12466 APY29_09255 APY29_09260 PF07690 Major Facilitator Superfamily APY29_09265 PF00072 Response regulator receiver domain APY29_09265 PF13487 HD domain APY29_09270 PF00072 Response regulator receiver domain APY29_09270 PF00512 His Kinase A (phospho-acceptor) domain APY29_09270 PF01627 Hpt domain APY29_09270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_09270 PF03924 CHASE domain APY29_09270 PF13426 PAS domain APY29_09275 PF04286 APY29_09275 APY29_09285 PF00202 Aminotransferase class-III APY29_09295 PF07690 Major Facilitator Superfamily APY29_09300 PF02634 FdhD/NarQ family APY29_09305 PF00384 Molybdopterin oxidoreductase APY29_09305 PF01568 Molydopterin dinucleotide binding domain APY29_09315 PF00083 Sugar (and other) transporter APY29_09315 PF07690 Major Facilitator Superfamily APY29_09320 PF01814 Hemerythrin HHE cation binding domain APY29_09325 PF00072 Response regulator receiver domain APY29_09325 PF00990 GGDEF domain APY29_09330 PF01266 FAD dependent oxidoreductase APY29_09335 PF00120 Glutamine synthetase, catalytic domain APY29_09340 PF07722 Peptidase C26 APY29_09345 PF00120 Glutamine synthetase, catalytic domain APY29_09350 PF00202 Aminotransferase class-III APY29_09355 PF13416 Bacterial extracellular solute-binding protein APY29_09360 PF13533 Biotin-lipoyl like APY29_09360 PF16576 APY29_09360 APY29_09365 PF07690 Major Facilitator Superfamily APY29_09370 PF02321 Outer membrane efflux protein APY29_09375 PF00005 ABC transporter APY29_09375 PF08402 TOBE domain APY29_09380 PF00528 Binding-protein-dependent transport system inner membrane component APY29_09385 PF00528 Binding-protein-dependent transport system inner membrane component APY29_09395 PF00171 Aldehyde dehydrogenase family APY29_09400 PF01544 CorA-like Mg2+ transporter protein APY29_09405 PF13387 APY29_09405 APY29_09410 PF00571 CBS domain APY29_09410 PF03471 Transporter associated domain APY29_09420 PF02130 Uncharacterized protein family UPF0054 APY29_09430 PF02562 PhoH-like protein APY29_09435 PF00919 Uncharacterized protein family UPF0004 APY29_09435 PF01938 TRAM domain APY29_09435 PF04055 Radical SAM superfamily APY29_09440 PF02798 Glutathione S-transferase, N-terminal domain APY29_09445 PF08279 HTH domain APY29_09445 PF13280 APY29_09445 APY29_09450 PF01464 Transglycosylase SLT domain APY29_09455 PF00355 Rieske [2Fe-2S] domain APY29_09455 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APY29_09460 PF00032 Cytochrome b(C-terminal)/b6/petD APY29_09460 PF00033 Cytochrome b(N-terminal)/b6/petB APY29_09465 PF02167 Cytochrome C1 family APY29_09470 PF00043 Glutathione S-transferase, C-terminal domain APY29_09470 PF13417 Glutathione S-transferase, N-terminal domain APY29_09475 PF04386 Stringent starvation protein B APY29_09485 PF11743 APY29_09485 APY29_09490 PF00270 DEAD/DEAH box helicase APY29_09490 PF00271 Helicase conserved C-terminal domain APY29_09490 PF08494 APY29_09490 APY29_09495 PF02245 Methylpurine-DNA glycosylase (MPG) APY29_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_09500 PF00672 HAMP domain APY29_09500 PF12729 APY29_09500 APY29_09505 PF01584 CheW-like domain APY29_09510 PF00990 GGDEF domain APY29_09520 PF00665 Integrase core domain APY29_09525 PF01527 Transposase APY29_09530 PF00665 Integrase core domain APY29_09530 PF13276 APY29_09530 APY29_09535 PF01527 Transposase APY29_09550 PF00589 Phage integrase family APY29_09560 PF00816 H-NS histone family APY29_09565 PF12244 APY29_09565 APY29_09570 PF01068 ATP dependent DNA ligase domain APY29_09570 PF04679 ATP dependent DNA ligase C terminal region APY29_09570 PF13298 DNA polymerase Ligase (LigD) APY29_09575 PF00570 HRDC domain APY29_09575 PF01612 3'-5' exonuclease APY29_09580 PF03781 Sulfatase-modifying factor enzyme 1 APY29_09585 PF06057 Bacterial virulence protein (VirJ) APY29_09590 PF02601 APY29_09590 APY29_09590 PF13742 APY29_09590 APY29_09595 PF08331 APY29_09595 APY29_09595 PF13484 APY29_09595 APY29_09600 PF01256 Carbohydrate kinase APY29_09600 PF03853 YjeF-related protein N-terminus APY29_09605 PF02367 Uncharacterised P-loop hydrolase UPF0079 APY29_09610 PF01520 N-acetylmuramoyl-L-alanine amidase APY29_09610 PF11741 AMIN domain APY29_09615 PF01119 DNA mismatch repair protein, C-terminal domain APY29_09615 PF08676 MutL C terminal dimerisation domain APY29_09615 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_09620 PF07920 Protein of unknown function (DUF1684) APY29_09625 PF01963 APY29_09625 APY29_09630 PF05233 APY29_09630 APY29_09630 PF07879 APY29_09630 APY29_09635 PF00106 short chain dehydrogenase APY29_09640 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY29_09645 PF01435 Peptidase family M48 APY29_09650 PF00563 EAL domain APY29_09650 PF00990 GGDEF domain APY29_09650 PF13188 PAS domain APY29_09655 PF03486 HI0933-like protein APY29_09660 PF07152 YaeQ protein APY29_09665 PF00313 'Cold-shock' DNA-binding domain APY29_09670 PF00043 Glutathione S-transferase, C-terminal domain APY29_09670 PF02798 Glutathione S-transferase, N-terminal domain APY29_09675 PF07859 alpha/beta hydrolase fold APY29_09680 PF02696 APY29_09680 APY29_09685 PF00156 Phosphoribosyl transferase domain APY29_09690 PF00270 DEAD/DEAH box helicase APY29_09690 PF00271 Helicase conserved C-terminal domain APY29_09690 PF03880 DbpA RNA binding domain APY29_09695 PF00005 ABC transporter APY29_09695 PF12848 ABC transporter APY29_09695 PF16326 APY29_09695 APY29_09700 PF01337 Barstar (barnase inhibitor) APY29_09705 PF00545 ribonuclease APY29_09710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APY29_09710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APY29_09715 PF00459 Inositol monophosphatase family APY29_09720 PF00588 SpoU rRNA Methylase family APY29_09725 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein APY29_09730 PF00563 EAL domain APY29_09730 PF00672 HAMP domain APY29_09730 PF00990 GGDEF domain APY29_09730 PF17203 APY29_09730 APY29_09735 PF13353 4Fe-4S single cluster domain APY29_09740 PF01132 Elongation factor P (EF-P) OB domain APY29_09740 PF08207 Elongation factor P (EF-P) KOW-like domain APY29_09740 PF09285 Elongation factor P, C-terminal APY29_09750 PF01979 Amidohydrolase family APY29_09755 PF13489 Methyltransferase domain APY29_09760 PF13419 Haloacid dehalogenase-like hydrolase APY29_09775 PF13683 APY29_09775 APY29_09800 PF16242 APY29_09800 APY29_09805 PF00753 Metallo-beta-lactamase superfamily APY29_09815 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APY29_09820 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APY29_09825 PF13520 Amino acid permease APY29_09830 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_09835 PF01551 Peptidase family M23 APY29_09840 PF01979 Amidohydrolase family APY29_09845 PF01809 APY29_09845 APY29_09855 PF01258 Prokaryotic dksA/traR C4-type zinc finger APY29_09860 PF05977 Transmembrane secretion effector APY29_09865 PF02657 Fe-S metabolism associated domain APY29_09870 PF01406 tRNA synthetases class I (C) catalytic domain APY29_09870 PF09190 DALR domain APY29_09880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APY29_09880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APY29_09885 PF00764 Arginosuccinate synthase APY29_09890 PF13508 Acetyltransferase (GNAT) domain APY29_09895 PF01546 Peptidase family M20/M25/M40 APY29_09895 PF07687 Peptidase dimerisation domain APY29_09900 PF00696 Amino acid kinase family APY29_09900 PF04768 Protein of unknown function (DUF619) APY29_09905 PF13302 Acetyltransferase (GNAT) domain APY29_09910 PF01118 Semialdehyde dehydrogenase, NAD binding domain APY29_09915 PF00206 Lyase APY29_09920 PF03795 YCII-related domain APY29_09930 PF00171 Aldehyde dehydrogenase family APY29_09935 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APY29_09935 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APY29_09940 PF07690 Major Facilitator Superfamily APY29_09950 PF02322 APY29_09950 APY29_09955 PF01654 APY29_09955 APY29_09960 PF00005 ABC transporter APY29_09960 PF00664 ABC transporter transmembrane region APY29_09965 PF00005 ABC transporter APY29_09965 PF00664 ABC transporter transmembrane region APY29_09970 PF00313 'Cold-shock' DNA-binding domain APY29_09970 PF06961 APY29_09970 APY29_09975 PF00561 alpha/beta hydrolase fold APY29_09985 PF03918 Cytochrome C biogenesis protein APY29_09990 PF08534 Redoxin APY29_09995 PF01578 APY29_09995 APY29_09995 PF16327 APY29_09995 APY29_10000 PF03100 CcmE APY29_10005 PF04995 APY29_10005 APY29_10010 PF01578 APY29_10010 APY29_10015 PF03379 APY29_10015 APY29_10020 PF00005 ABC transporter APY29_10025 PF00155 Aminotransferase class I and II APY29_10030 PF00795 Carbon-nitrogen hydrolase APY29_10035 PF05096 Glutamine cyclotransferase APY29_10045 PF00849 RNA pseudouridylate synthase APY29_10045 PF01479 S4 domain APY29_10050 PF04079 Putative transcriptional regulators (Ypuh-like) APY29_10055 PF02616 ScpA/B protein APY29_10060 PF03795 YCII-related domain APY29_10065 PF01722 BolA-like protein APY29_10070 PF00356 Bacterial regulatory proteins, lacI family APY29_10070 PF13377 Periplasmic binding protein-like domain APY29_10075 PF00593 TonB dependent receptor APY29_10075 PF13620 Carboxypeptidase regulatory-like domain APY29_10080 PF10091 Putative glucoamylase APY29_10085 PF13416 Bacterial extracellular solute-binding protein APY29_10090 PF00528 Binding-protein-dependent transport system inner membrane component APY29_10095 PF00528 Binding-protein-dependent transport system inner membrane component APY29_10100 PF00754 F5/8 type C domain APY29_10100 PF06202 Amylo-alpha-1,6-glucosidase APY29_10105 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_10110 PF01963 APY29_10110 APY29_10120 PF00795 Carbon-nitrogen hydrolase APY29_10125 PF04371 Porphyromonas-type peptidyl-arginine deiminase APY29_10135 PF00444 Ribosomal protein L36 APY29_10140 PF02224 Cytidylate kinase APY29_10145 PF00575 S1 RNA binding domain APY29_10150 PF00216 Bacterial DNA-binding protein APY29_10155 PF06305 APY29_10155 APY29_10160 PF13432 Tetratricopeptide repeat APY29_10165 PF00953 Glycosyl transferase family 4 APY29_10170 PF02719 Polysaccharide biosynthesis protein APY29_10170 PF13727 CoA-binding domain APY29_10175 PF00483 Nucleotidyl transferase APY29_10180 PF00999 Sodium/hydrogen exchanger family APY29_10180 PF02254 TrkA-N domain APY29_10185 PF06844 Protein of unknown function (DUF1244) APY29_10190 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APY29_10190 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APY29_10195 PF00478 IMP dehydrogenase / GMP reductase domain APY29_10195 PF00571 CBS domain APY29_10200 PF00117 Glutamine amidotransferase class-I APY29_10200 PF00958 GMP synthase C terminal domain APY29_10200 PF02540 NAD synthase APY29_10205 PF00589 Phage integrase family APY29_10205 PF13356 Domain of unknown function (DUF4102) APY29_10220 PF06834 APY29_10220 APY29_10225 PF07511 APY29_10225 APY29_10230 PF00665 Integrase core domain APY29_10235 PF01527 Transposase APY29_10240 PF04307 APY29_10240 APY29_10245 PF00107 Zinc-binding dehydrogenase APY29_10245 PF08240 Alcohol dehydrogenase GroES-like domain APY29_10250 PF12146 Putative lysophospholipase APY29_10255 PF00248 Aldo/keto reductase family APY29_10260 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) APY29_10265 PF00440 Bacterial regulatory proteins, tetR family APY29_10265 PF14246 AefR-like transcriptional repressor, C-terminal region APY29_10270 PF01527 Transposase APY29_10275 PF00665 Integrase core domain APY29_10275 PF13276 APY29_10275 APY29_10280 PF02534 Type IV secretory system Conjugative DNA transfer APY29_10290 PF00437 Type II/IV secretion system protein APY29_10295 PF04956 APY29_10295 APY29_10300 PF05101 APY29_10300 APY29_10305 PF03135 APY29_10305 APY29_10320 PF04610 APY29_10320 APY29_10330 PF03524 Conjugal transfer protein APY29_10335 PF03743 Bacterial conjugation TrbI-like protein APY29_10345 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APY29_10345 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY29_10345 PF10070 APY29_10345 APY29_10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_10350 PF03466 LysR substrate binding domain APY29_10365 PF17201 APY29_10365 APY29_10370 PF00072 Response regulator receiver domain APY29_10370 PF00196 Bacterial regulatory proteins, luxR family APY29_10380 PF12833 Helix-turn-helix domain APY29_10385 PF00857 Isochorismatase family APY29_10390 PF07681 APY29_10390 APY29_10395 PF00929 Exonuclease APY29_10400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APY29_10405 PF01325 Iron dependent repressor, N-terminal DNA binding domain APY29_10405 PF02742 Iron dependent repressor, metal binding and dimerisation domain APY29_10410 PF01566 APY29_10410 APY29_10415 PF00561 alpha/beta hydrolase fold APY29_10430 PF05977 Transmembrane secretion effector APY29_10435 PF07969 Amidohydrolase family APY29_10440 PF00924 Mechanosensitive ion channel APY29_10445 PF00391 PEP-utilising enzyme, mobile domain APY29_10445 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APY29_10445 PF02896 PEP-utilising enzyme, TIM barrel domain APY29_10450 PF03618 APY29_10450 APY29_10455 PF06853 APY29_10455 APY29_10460 PF00293 NUDIX domain APY29_10465 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_10470 PF01066 CDP-alcohol phosphatidyltransferase APY29_10475 PF09712 APY29_10475 APY29_10480 PF00561 alpha/beta hydrolase fold APY29_10485 PF04024 APY29_10485 APY29_10495 PF01266 FAD dependent oxidoreductase APY29_10505 PF00575 S1 RNA binding domain APY29_10505 PF09371 Tex-like protein N-terminal domain APY29_10505 PF12836 Helix-hairpin-helix motif APY29_10505 PF16921 APY29_10505 APY29_10510 PF00072 Response regulator receiver domain APY29_10510 PF00512 His Kinase A (phospho-acceptor) domain APY29_10510 PF01590 GAF domain APY29_10510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_10510 PF08447 PAS fold APY29_10510 PF08448 PAS fold APY29_10510 PF13185 GAF domain APY29_10550 PF00034 Cytochrome c APY29_10555 PF00034 Cytochrome c APY29_10560 PF00529 HlyD family secretion protein APY29_10560 PF16576 APY29_10560 APY29_10565 PF00873 AcrB/AcrD/AcrF family APY29_10575 PF13276 APY29_10575 APY29_10575 PF13683 APY29_10575 APY29_10580 PF01527 Transposase APY29_10585 PF00873 AcrB/AcrD/AcrF family APY29_10590 PF01081 KDPG and KHG aldolase APY29_10595 PF00920 Dehydratase family APY29_10600 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APY29_10605 PF02685 Glucokinase APY29_10610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APY29_10610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APY29_10615 PF00005 ABC transporter APY29_10615 PF08402 TOBE domain APY29_10620 PF01571 Aminomethyltransferase folate-binding domain APY29_10620 PF08669 Glycine cleavage T-protein C-terminal barrel domain APY29_10625 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APY29_10630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APY29_10635 PF00890 FAD binding domain APY29_10635 PF02910 Fumarate reductase flavoprotein C-term APY29_10645 PF13085 2Fe-2S iron-sulfur cluster binding domain APY29_10645 PF13534 4Fe-4S dicluster domain APY29_10650 PF03937 Flavinator of succinate dehydrogenase APY29_10660 PF02687 APY29_10660 APY29_10660 PF12704 MacB-like periplasmic core domain APY29_10665 PF00005 ABC transporter APY29_10670 PF01370 NAD dependent epimerase/dehydratase family APY29_10675 PF00753 Metallo-beta-lactamase superfamily APY29_10675 PF03772 APY29_10675 APY29_10675 PF13567 APY29_10675 APY29_10680 PF01618 APY29_10680 APY29_10685 PF02472 Biopolymer transport protein ExbD/TolR APY29_10690 PF00005 ABC transporter APY29_10690 PF00664 ABC transporter transmembrane region APY29_10695 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APY29_10700 PF02348 Cytidylyltransferase APY29_10705 PF01451 Low molecular weight phosphotyrosine protein phosphatase APY29_10710 PF01436 NHL repeat APY29_10715 PF01541 GIY-YIG catalytic domain APY29_10715 PF02151 UvrB/uvrC motif APY29_10715 PF08459 UvrC Helix-hairpin-helix N-terminal APY29_10720 PF01066 CDP-alcohol phosphatidyltransferase APY29_10740 PF00589 Phage integrase family APY29_10740 PF13356 Domain of unknown function (DUF4102) APY29_10745 PF00665 Integrase core domain APY29_10750 PF01527 Transposase APY29_10760 PF00580 UvrD/REP helicase N-terminal domain APY29_10760 PF13361 UvrD-like helicase C-terminal domain APY29_10765 PF13175 AAA ATPase domain APY29_10775 PF01609 Transposase DDE domain APY29_10775 PF05598 APY29_10775 APY29_10780 PF05231 APY29_10780 APY29_10790 PF04610 APY29_10790 APY29_10805 PF01764 Lipase (class 3) APY29_10815 PF01527 Transposase APY29_10820 PF00665 Integrase core domain APY29_10830 PF01527 Transposase APY29_10835 PF00665 Integrase core domain APY29_10835 PF13276 APY29_10835 APY29_10850 PF08808 APY29_10850 APY29_10855 PF12553 APY29_10855 APY29_10860 PF07916 APY29_10860 APY29_10880 PF07511 APY29_10880 APY29_10890 PF12760 Transposase zinc-ribbon domain APY29_10890 PF12762 APY29_10890 APY29_10895 PF07690 Major Facilitator Superfamily APY29_10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_10900 PF03466 LysR substrate binding domain APY29_10905 PF13462 Thioredoxin APY29_10910 PF11130 APY29_10910 APY29_10925 PF11920 APY29_10925 APY29_10935 PF11990 APY29_10935 APY29_10940 PF11190 APY29_10940 APY29_10945 PF11660 APY29_10945 APY29_10950 PF09686 APY29_10950 APY29_10955 PF14348 APY29_10955 APY29_10960 PF12696 TraM recognition site of TraD and TraG APY29_10965 PF11072 APY29_10965 APY29_10990 PF00271 Helicase conserved C-terminal domain APY29_11015 PF11679 APY29_11015 APY29_11020 PF12101 APY29_11020 APY29_11025 PF13936 Helix-turn-helix domain APY29_11035 PF11284 APY29_11035 APY29_11060 PF16219 APY29_11060 APY29_11070 PF11284 APY29_11070 APY29_11090 PF00145 C-5 cytosine-specific DNA methylase APY29_11095 PF01131 DNA topoisomerase APY29_11095 PF01396 APY29_11095 APY29_11095 PF01751 Toprim domain APY29_11100 PF00436 Single-strand binding protein family APY29_11105 PF11358 APY29_11105 APY29_11110 PF08900 APY29_11110 APY29_11120 PF11198 APY29_11120 APY29_11125 PF02195 ParB-like nuclease domain APY29_11135 PF13614 AAA domain APY29_11140 PF05930 Prophage CP4-57 regulatory protein (AlpA) APY29_11155 PF00145 C-5 cytosine-specific DNA methylase APY29_11160 PF00176 SNF2 family N-terminal domain APY29_11160 PF00271 Helicase conserved C-terminal domain APY29_11170 PF00665 Integrase core domain APY29_11170 PF13936 Helix-turn-helix domain APY29_11175 PF01695 IstB-like ATP binding protein APY29_11185 PF00271 Helicase conserved C-terminal domain APY29_11190 PF09369 APY29_11190 APY29_11195 PF13091 PLD-like domain APY29_11200 PF12101 APY29_11200 APY29_11225 PF00665 Integrase core domain APY29_11230 PF01527 Transposase APY29_11240 PF01648 4'-phosphopantetheinyl transferase superfamily APY29_11250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY29_11250 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY29_11250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY29_11255 PF03486 HI0933-like protein APY29_11260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_11270 PF00581 Rhodanese-like domain APY29_11275 PF00072 Response regulator receiver domain APY29_11275 PF00196 Bacterial regulatory proteins, luxR family APY29_11280 PF00575 S1 RNA binding domain APY29_11280 PF10150 Ribonuclease E/G family APY29_11285 PF00849 RNA pseudouridylate synthase APY29_11285 PF01479 S4 domain APY29_11290 PF11737 APY29_11290 APY29_11295 PF02535 APY29_11295 APY29_11300 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_11305 PF01329 Pterin 4 alpha carbinolamine dehydratase APY29_11310 PF01106 NifU-like domain APY29_11360 PF01527 Transposase APY29_11365 PF00665 Integrase core domain APY29_11365 PF13276 APY29_11365 APY29_11380 PF17091 APY29_11380 APY29_11385 PF02303 Helix-destabilising protein APY29_11390 PF02486 APY29_11390 APY29_11410 PF00665 Integrase core domain APY29_11415 PF01527 Transposase APY29_11425 PF09335 APY29_11425 APY29_11435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY29_11440 PF07995 Glucose / Sorbosone dehydrogenase APY29_11450 PF00144 Beta-lactamase APY29_11455 PF00072 Response regulator receiver domain APY29_11455 PF04397 LytTr DNA-binding domain APY29_11460 PF06580 APY29_11460 APY29_11475 PF00082 Subtilase family APY29_11475 PF03797 Autotransporter beta-domain APY29_11475 PF12951 APY29_11475 APY29_11480 PF16576 APY29_11480 APY29_11485 PF00873 AcrB/AcrD/AcrF family APY29_11490 PF01527 Transposase APY29_11495 PF00665 Integrase core domain APY29_11495 PF13276 APY29_11495 APY29_11500 PF02321 Outer membrane efflux protein APY29_11505 PF00512 His Kinase A (phospho-acceptor) domain APY29_11505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_11510 PF00072 Response regulator receiver domain APY29_11510 PF00196 Bacterial regulatory proteins, luxR family APY29_11515 PF12951 APY29_11515 APY29_11515 PF13018 APY29_11515 APY29_11520 PF00563 EAL domain APY29_11525 PF07081 Protein of unknown function (DUF1349) APY29_11530 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APY29_11535 PF05974 Domain of unknown function (DUF892) APY29_11545 PF10685 APY29_11545 APY29_11555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY29_11555 PF10414 Sirohaem synthase dimerisation region APY29_11555 PF13241 Putative NAD(P)-binding APY29_11555 PF14824 Sirohaem biosynthesis protein central APY29_11565 PF12804 MobA-like NTP transferase domain APY29_11570 PF00994 Probable molybdopterin binding domain APY29_11570 PF03453 MoeA N-terminal region (domain I and II) APY29_11570 PF03454 MoeA C-terminal region (domain IV) APY29_11575 PF04193 PQ loop repeat APY29_11580 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_11590 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_11595 PF00665 Integrase core domain APY29_11595 PF13276 APY29_11595 APY29_11600 PF01527 Transposase APY29_11605 PF00665 Integrase core domain APY29_11605 PF13276 APY29_11605 APY29_11610 PF00665 Integrase core domain APY29_11610 PF13276 APY29_11610 APY29_11615 PF01527 Transposase APY29_11635 PF06627 Protein of unknown function (DUF1153) APY29_11640 PF00665 Integrase core domain APY29_11650 PF01695 IstB-like ATP binding protein APY29_11655 PF00665 Integrase core domain APY29_11655 PF13936 Helix-turn-helix domain APY29_11665 PF05717 APY29_11665 APY29_11670 PF13007 APY29_11670 APY29_11675 PF11740 APY29_11675 APY29_11685 PF01526 APY29_11685 APY29_11685 PF13700 APY29_11685 APY29_11695 PF00665 Integrase core domain APY29_11700 PF01527 Transposase APY29_11705 PF06414 Zeta toxin APY29_11715 PF01850 PIN domain APY29_11720 PF04014 Antidote-toxin recognition MazE APY29_11725 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_11735 PF00156 Phosphoribosyl transferase domain APY29_11740 PF00239 Resolvase, N terminal domain APY29_11745 PF01555 DNA methylase APY29_11750 PF09571 APY29_11750 APY29_11755 PF13166 APY29_11755 APY29_11760 PF00665 Integrase core domain APY29_11765 PF01527 Transposase APY29_11770 PF13166 APY29_11770 APY29_11790 PF00145 C-5 cytosine-specific DNA methylase APY29_11795 PF12183 Restriction endonuclease NotI APY29_11805 PF13007 APY29_11805 APY29_11810 PF05717 APY29_11810 APY29_11830 PF00107 Zinc-binding dehydrogenase APY29_11830 PF08240 Alcohol dehydrogenase GroES-like domain APY29_11830 PF13823 Alcohol dehydrogenase GroES-associated APY29_11840 PF13628 APY29_11840 APY29_11850 PF00593 TonB dependent receptor APY29_11855 PF00665 Integrase core domain APY29_11860 PF01527 Transposase APY29_11870 PF00581 Rhodanese-like domain APY29_11870 PF00899 ThiF family APY29_11875 PF00994 Probable molybdopterin binding domain APY29_11875 PF03453 MoeA N-terminal region (domain I and II) APY29_11875 PF03454 MoeA C-terminal region (domain IV) APY29_11880 PF01926 50S ribosome-binding GTPase APY29_11880 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APY29_11885 PF13360 PQQ-like domain APY29_11890 PF09976 Tetratricopeptide repeat APY29_11895 PF13413 Helix-turn-helix domain APY29_11895 PF13464 APY29_11895 APY29_11900 PF13432 Tetratricopeptide repeat APY29_11905 PF04055 Radical SAM superfamily APY29_11910 PF00334 Nucleoside diphosphate kinase APY29_11915 PF00440 Bacterial regulatory proteins, tetR family APY29_11920 PF00378 Enoyl-CoA hydratase/isomerase family APY29_11920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY29_11920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY29_11925 PF00108 Thiolase, N-terminal domain APY29_11925 PF02803 Thiolase, C-terminal domain APY29_11930 PF02537 APY29_11930 APY29_11935 PF00004 ATPase family associated with various cellular activities (AAA) APY29_11935 PF12002 MgsA AAA+ ATPase C terminal APY29_11935 PF16193 APY29_11935 APY29_11945 PF03548 Outer membrane lipoprotein carrier protein LolA APY29_11950 PF01841 Transglutaminase-like superfamily APY29_11950 PF12969 Domain of Unknown Function with PDB structure (DUF3857) APY29_11955 PF01580 FtsK/SpoIIIE family APY29_11955 PF09397 Ftsk gamma domain APY29_11955 PF13491 APY29_11955 APY29_11960 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_11965 PF04339 APY29_11965 APY29_11970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APY29_11975 PF01176 Translation initiation factor 1A / IF-1 APY29_11980 PF00004 ATPase family associated with various cellular activities (AAA) APY29_11980 PF02861 Clp amino terminal domain APY29_11980 PF07724 AAA domain (Cdc48 subfamily) APY29_11980 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_11985 PF02617 ATP-dependent Clp protease adaptor protein ClpS APY29_11990 PF00293 NUDIX domain APY29_11995 PF03054 tRNA methyl transferase APY29_12000 PF04356 Protein of unknown function (DUF489) APY29_12005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12015 PF00563 EAL domain APY29_12015 PF00990 GGDEF domain APY29_12015 PF08447 PAS fold APY29_12015 PF13426 PAS domain APY29_12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12020 PF07730 Histidine kinase APY29_12020 PF08448 PAS fold APY29_12020 PF13426 PAS domain APY29_12025 PF00072 Response regulator receiver domain APY29_12025 PF00563 EAL domain APY29_12025 PF00990 GGDEF domain APY29_12030 PF00512 His Kinase A (phospho-acceptor) domain APY29_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12040 PF04316 Anti-sigma-28 factor, FlgM APY29_12045 PF13144 SAF-like APY29_12050 PF00072 Response regulator receiver domain APY29_12050 PF01584 CheW-like domain APY29_12055 PF00460 Flagella basal body rod protein APY29_12060 PF00460 Flagella basal body rod protein APY29_12060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12065 PF03963 APY29_12065 APY29_12065 PF13860 FlgD Ig-like domain APY29_12065 PF13861 FlgD Tudor-like domain APY29_12070 PF00460 Flagella basal body rod protein APY29_12070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12070 PF07559 Flagellar basal body protein FlaE APY29_12075 PF00460 Flagella basal body rod protein APY29_12075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12080 PF00460 Flagella basal body rod protein APY29_12080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12085 PF02107 APY29_12085 APY29_12090 PF02119 APY29_12090 APY29_12095 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APY29_12095 PF10135 APY29_12095 APY29_12100 PF00460 Flagella basal body rod protein APY29_12100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY29_12105 PF00669 Bacterial flagellin N-terminal helical region APY29_12105 PF00700 Bacterial flagellin C-terminal helical region APY29_12110 PF00669 Bacterial flagellin N-terminal helical region APY29_12110 PF00700 Bacterial flagellin C-terminal helical region APY29_12110 PF07196 Flagellin hook IN motif APY29_12115 PF02465 APY29_12115 APY29_12115 PF07195 APY29_12115 APY29_12115 PF07196 Flagellin hook IN motif APY29_12120 PF02561 Flagellar protein FliS APY29_12130 PF16823 APY29_12130 APY29_12135 PF00072 Response regulator receiver domain APY29_12135 PF00196 Bacterial regulatory proteins, luxR family APY29_12140 PF00309 APY29_12140 APY29_12140 PF04552 Sigma-54, DNA binding domain APY29_12140 PF04963 Sigma-54 factor, core binding domain APY29_12145 PF00072 Response regulator receiver domain APY29_12150 PF00158 Sigma-54 interaction domain APY29_12150 PF02954 Bacterial regulatory protein, Fis family APY29_12150 PF06490 APY29_12150 APY29_12155 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APY29_12165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_12165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_12170 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_12175 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_12180 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_12185 PF00355 Rieske [2Fe-2S] domain APY29_12185 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APY29_12190 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_12200 PF01527 Transposase APY29_12205 PF00665 Integrase core domain APY29_12215 PF13276 APY29_12215 APY29_12215 PF13683 APY29_12215 APY29_12220 PF00535 Glycosyl transferase family 2 APY29_12225 PF02049 APY29_12225 APY29_12230 PF01514 Secretory protein of YscJ/FliF family APY29_12230 PF08345 APY29_12230 APY29_12235 PF01706 FliG C-terminal domain APY29_12235 PF14841 FliG middle domain APY29_12235 PF14842 FliG N-terminal domain APY29_12240 PF02108 APY29_12240 APY29_12245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_12250 PF02050 Flagellar FliJ protein APY29_12255 PF02120 Flagellar hook-length control protein FliK APY29_12260 PF03748 APY29_12260 APY29_12265 PF01052 Surface presentation of antigens (SPOA) APY29_12265 PF02154 Flagellar motor switch protein FliM APY29_12270 PF01052 Surface presentation of antigens (SPOA) APY29_12275 PF04347 APY29_12275 APY29_12280 PF00813 APY29_12280 APY29_12285 PF01313 APY29_12285 APY29_12290 PF01311 APY29_12290 APY29_12295 PF00990 GGDEF domain APY29_12295 PF07494 Two component regulator propeller APY29_12295 PF07495 Y_Y_Y domain APY29_12305 PF00990 GGDEF domain APY29_12310 PF00563 EAL domain APY29_12310 PF00990 GGDEF domain APY29_12310 PF03707 APY29_12310 APY29_12315 PF01312 FlhB HrpN YscU SpaS Family APY29_12320 PF00771 FHIPEP family APY29_12325 PF00448 SRP54-type protein, GTPase domain APY29_12330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_12335 PF04539 Sigma-70 region 3 APY29_12335 PF04542 Sigma-70 region 2 APY29_12335 PF04545 Sigma-70, region 4 APY29_12340 PF00072 Response regulator receiver domain APY29_12345 PF04344 Chemotaxis phosphatase, CheZ APY29_12350 PF01584 CheW-like domain APY29_12350 PF01627 Hpt domain APY29_12350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12350 PF02895 Signal transducing histidine kinase, homodimeric domain APY29_12360 PF01527 Transposase APY29_12365 PF00665 Integrase core domain APY29_12365 PF13276 APY29_12365 APY29_12370 PF01527 Transposase APY29_12375 PF13276 APY29_12375 APY29_12375 PF13683 APY29_12375 APY29_12395 PF00665 Integrase core domain APY29_12400 PF01527 Transposase APY29_12405 PF01527 Transposase APY29_12410 PF13276 APY29_12410 APY29_12410 PF13683 APY29_12410 APY29_12415 PF00593 TonB dependent receptor APY29_12420 PF00593 TonB dependent receptor APY29_12420 PF07715 TonB-dependent Receptor Plug Domain APY29_12425 PF01618 APY29_12425 APY29_12430 PF00691 OmpA family APY29_12430 PF13677 APY29_12430 APY29_12435 PF13614 AAA domain APY29_12440 PF01584 CheW-like domain APY29_12445 PF13466 STAS domain APY29_12450 PF00072 Response regulator receiver domain APY29_12455 PF01584 CheW-like domain APY29_12455 PF01627 Hpt domain APY29_12455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12455 PF02895 Signal transducing histidine kinase, homodimeric domain APY29_12460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12460 PF00672 HAMP domain APY29_12460 PF12729 APY29_12460 APY29_12470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12470 PF17200 APY29_12470 APY29_12475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12475 PF00672 HAMP domain APY29_12475 PF02743 Cache domain APY29_12480 PF13557 APY29_12480 APY29_12485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12490 PF12729 APY29_12490 APY29_12495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12495 PF00672 HAMP domain APY29_12495 PF12729 APY29_12495 APY29_12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12510 PF00672 HAMP domain APY29_12515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12515 PF00672 HAMP domain APY29_12515 PF12729 APY29_12515 APY29_12520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12520 PF00672 HAMP domain APY29_12520 PF12729 APY29_12520 APY29_12525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12525 PF17201 APY29_12525 APY29_12530 PF07238 PilZ domain APY29_12530 PF07317 Flagellar regulator YcgR APY29_12535 PF01584 CheW-like domain APY29_12545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_12545 PF00672 HAMP domain APY29_12545 PF12729 APY29_12545 APY29_12550 PF01739 CheR methyltransferase, SAM binding domain APY29_12550 PF03705 CheR methyltransferase, all-alpha domain APY29_12555 PF03975 CheD chemotactic sensory transduction APY29_12560 PF00072 Response regulator receiver domain APY29_12560 PF01339 CheB methylesterase APY29_12565 PF00563 EAL domain APY29_12565 PF00990 GGDEF domain APY29_12565 PF13185 GAF domain APY29_12565 PF13426 PAS domain APY29_12575 PF00330 Aconitase family (aconitate hydratase) APY29_12575 PF06434 Aconitate hydratase 2 N-terminus APY29_12575 PF11791 Aconitate B N-terminal domain APY29_12580 PF01850 PIN domain APY29_12585 PF04014 Antidote-toxin recognition MazE APY29_12590 PF00330 Aconitase family (aconitate hydratase) APY29_12590 PF00694 Aconitase C-terminal domain APY29_12600 PF00501 AMP-binding enzyme APY29_12600 PF13193 AMP-binding enzyme C-terminal domain APY29_12605 PF00378 Enoyl-CoA hydratase/isomerase family APY29_12610 PF00072 Response regulator receiver domain APY29_12610 PF00512 His Kinase A (phospho-acceptor) domain APY29_12610 PF01627 Hpt domain APY29_12610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_12615 PF00072 Response regulator receiver domain APY29_12615 PF01966 HD domain APY29_12620 PF00152 tRNA synthetases class II (D, K and N) APY29_12620 PF01336 OB-fold nucleic acid binding domain APY29_12625 PF00472 RF-1 domain APY29_12625 PF03462 PCRF domain APY29_12630 PF04397 LytTr DNA-binding domain APY29_12635 PF13276 APY29_12635 APY29_12635 PF13683 APY29_12635 APY29_12640 PF01527 Transposase APY29_12660 PF15649 APY29_12660 APY29_12675 PF01368 DHH family APY29_12675 PF02272 DHHA1 domain APY29_12685 PF01272 Transcription elongation factor, GreA/GreB, C-term APY29_12685 PF03449 Transcription elongation factor, N-terminal APY29_12690 PF02142 MGS-like domain APY29_12690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_12690 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APY29_12700 PF00117 Glutamine amidotransferase class-I APY29_12700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APY29_12705 PF01113 Dihydrodipicolinate reductase, N-terminus APY29_12705 PF05173 Dihydrodipicolinate reductase, C-terminus APY29_12710 PF03473 MOSC domain APY29_12710 PF03475 3-alpha domain APY29_12715 PF00155 Aminotransferase class I and II APY29_12730 PF02421 Ferrous iron transport protein B APY29_12730 PF07664 APY29_12730 APY29_12730 PF07670 Nucleoside recognition APY29_12735 PF04023 FeoA domain APY29_12740 PF00378 Enoyl-CoA hydratase/isomerase family APY29_12745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_12750 PF00682 HMGL-like APY29_12755 PF00106 short chain dehydrogenase APY29_12760 PF01132 Elongation factor P (EF-P) OB domain APY29_12760 PF08207 Elongation factor P (EF-P) KOW-like domain APY29_12760 PF09285 Elongation factor P, C-terminal APY29_12770 PF13387 APY29_12770 APY29_12775 PF09498 APY29_12775 APY29_12780 PF01565 FAD binding domain APY29_12780 PF02913 FAD linked oxidases, C-terminal domain APY29_12785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APY29_12785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APY29_12790 PF00293 NUDIX domain APY29_12795 PF13520 Amino acid permease APY29_12800 PF13520 Amino acid permease APY29_12805 PF00596 Class II Aldolase and Adducin N-terminal domain APY29_12810 PF03079 ARD/ARD' family APY29_12820 PF01650 Peptidase C13 family APY29_12825 PF00149 Calcineurin-like phosphoesterase APY29_12825 PF16370 APY29_12825 APY29_12825 PF16371 APY29_12825 APY29_12830 PF01502 Phosphoribosyl-AMP cyclohydrolase APY29_12830 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APY29_12835 PF00977 Histidine biosynthesis protein APY29_12840 PF00977 Histidine biosynthesis protein APY29_12845 PF00117 Glutamine amidotransferase class-I APY29_12850 PF00475 Imidazoleglycerol-phosphate dehydratase APY29_12850 PF13242 HAD-hyrolase-like APY29_12855 PF00155 Aminotransferase class I and II APY29_12860 PF00815 Histidinol dehydrogenase APY29_12865 PF01634 ATP phosphoribosyltransferase APY29_12865 PF08029 HisG, C-terminal domain APY29_12870 PF01371 Trp repressor protein APY29_12875 PF03129 Anticodon binding domain APY29_12875 PF13393 Histidyl-tRNA synthetase APY29_12880 PF00027 Cyclic nucleotide-binding domain APY29_12880 PF13545 Crp-like helix-turn-helix domain APY29_12885 PF13645 APY29_12885 APY29_12890 PF00291 Pyridoxal-phosphate dependent enzyme APY29_12890 PF14821 Threonine synthase N terminus APY29_12895 PF07110 EthD domain APY29_12900 PF00288 GHMP kinases N terminal domain APY29_12900 PF08544 GHMP kinases C terminal APY29_12905 PF00696 Amino acid kinase family APY29_12905 PF00742 Homoserine dehydrogenase APY29_12905 PF03447 Homoserine dehydrogenase, NAD binding domain APY29_12905 PF13840 ACT domain APY29_12910 PF00665 Integrase core domain APY29_12915 PF01527 Transposase APY29_12925 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APY29_12925 PF08479 POTRA domain, ShlB-type APY29_12925 PF17287 APY29_12925 APY29_12930 PF13432 Tetratricopeptide repeat APY29_12930 PF14559 Tetratricopeptide repeat APY29_12935 PF01522 Polysaccharide deacetylase APY29_12935 PF14883 Hypothetical glycosyl hydrolase family 13 APY29_12940 PF13641 Glycosyltransferase like family 2 APY29_12945 PF13994 APY29_12945 APY29_12955 PF00171 Aldehyde dehydrogenase family APY29_12960 PF13828 APY29_12960 APY29_12965 PF08241 Methyltransferase domain APY29_12970 PF01180 Dihydroorotate dehydrogenase APY29_12975 PF01565 FAD binding domain APY29_12975 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APY29_12980 PF00892 EamA-like transporter family APY29_12985 PF01177 Asp/Glu/Hydantoin racemase APY29_12990 PF07690 Major Facilitator Superfamily APY29_12995 PF01569 PAP2 superfamily APY29_13000 PF04551 GcpE protein APY29_13005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_13010 PF00072 Response regulator receiver domain APY29_13010 PF02954 Bacterial regulatory protein, Fis family APY29_13015 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_13020 PF00563 EAL domain APY29_13020 PF00990 GGDEF domain APY29_13020 PF01590 GAF domain APY29_13025 PF00474 Sodium:solute symporter family APY29_13030 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_13030 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_13035 PF05787 Bacterial protein of unknown function (DUF839) APY29_13045 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APY29_13050 PF00342 Phosphoglucose isomerase APY29_13055 PF02261 Aspartate decarboxylase APY29_13060 PF02569 Pantoate-beta-alanine ligase APY29_13065 PF02548 Ketopantoate hydroxymethyltransferase APY29_13070 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APY29_13075 PF01743 Poly A polymerase head domain APY29_13075 PF12626 Polymerase A arginine-rich C-terminus APY29_13075 PF12627 Probable RNA and SrmB- binding site of polymerase A APY29_13085 PF02649 Type I GTP cyclohydrolase folE2 APY29_13090 PF01520 N-acetylmuramoyl-L-alanine amidase APY29_13090 PF11741 AMIN domain APY29_13100 PF05231 APY29_13100 APY29_13105 PF00083 Sugar (and other) transporter APY29_13115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY29_13115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY29_13120 PF14498 Glycosyl hydrolase family 65, N-terminal domain APY29_13125 PF01055 Glycosyl hydrolases family 31 APY29_13125 PF07691 PA14 domain APY29_13125 PF16338 APY29_13125 APY29_13125 PF17137 APY29_13125 APY29_13130 PF02449 Beta-galactosidase APY29_13135 PF03629 Domain of unknown function (DUF303) APY29_13135 PF13364 Beta-galactosidase jelly roll domain APY29_13145 PF00593 TonB dependent receptor APY29_13145 PF07715 TonB-dependent Receptor Plug Domain APY29_13155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_13155 PF03466 LysR substrate binding domain APY29_13170 PF01081 KDPG and KHG aldolase APY29_13175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_13175 PF13378 Enolase C-terminal domain-like APY29_13180 PF08450 SMP-30/Gluconolaconase/LRE-like region APY29_13185 PF05035 2-keto-3-deoxy-galactonokinase APY29_13190 PF00037 4Fe-4S binding domain APY29_13190 PF11953 Domain of unknown function (DUF3470) APY29_13200 PF00701 Dihydrodipicolinate synthetase family APY29_13205 PF13740 ACT domain APY29_13210 PF06877 Regulator of ribonuclease activity B APY29_13215 PF00578 AhpC/TSA family APY29_13220 PF02562 PhoH-like protein APY29_13220 PF13638 PIN domain APY29_13230 PF06912 APY29_13230 APY29_13235 PF08543 Phosphomethylpyrimidine kinase APY29_13240 PF12146 Putative lysophospholipase APY29_13255 PF00581 Rhodanese-like domain APY29_13255 PF09335 APY29_13255 APY29_13260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_13260 PF03466 LysR substrate binding domain APY29_13270 PF02678 Pirin APY29_13275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_13275 PF08447 PAS fold APY29_13285 PF02599 Global regulator protein family APY29_13290 PF01411 tRNA synthetases class II (A) APY29_13290 PF02272 DHHA1 domain APY29_13290 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APY29_13295 PF02631 RecX family APY29_13300 PF00154 recA bacterial DNA recombination protein APY29_13305 PF00717 Peptidase S24-like APY29_13305 PF01726 LexA DNA binding domain APY29_13310 PF03109 APY29_13310 APY29_13315 PF02464 Competence-damaged protein APY29_13320 PF01926 50S ribosome-binding GTPase APY29_13320 PF13167 APY29_13320 APY29_13320 PF16360 APY29_13320 APY29_13325 PF17209 APY29_13325 APY29_13330 PF01715 IPP transferase APY29_13335 PF00809 Pterin binding enzyme APY29_13340 PF00004 ATPase family associated with various cellular activities (AAA) APY29_13340 PF01434 Peptidase family M41 APY29_13340 PF06480 FtsH Extracellular APY29_13345 PF01728 FtsJ-like methyltransferase APY29_13350 PF01985 CRS1 / YhbY (CRM) domain APY29_13355 PF04430 Protein of unknown function (DUF498/DUF598) APY29_13360 PF01476 LysM domain APY29_13360 PF01551 Peptidase family M23 APY29_13365 PF09335 APY29_13365 APY29_13370 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) APY29_13375 PF01975 Survival protein SurE APY29_13380 PF01713 Smr domain APY29_13385 PF01142 tRNA pseudouridine synthase D (TruD) APY29_13390 PF02542 YgbB family APY29_13400 PF04977 Septum formation initiator APY29_13405 PF00113 Enolase, C-terminal TIM barrel domain APY29_13405 PF03952 Enolase, N-terminal domain APY29_13415 PF00793 DAHP synthetase I family APY29_13420 PF00117 Glutamine amidotransferase class-I APY29_13420 PF06418 CTP synthase N-terminus APY29_13430 PF00204 DNA gyrase B APY29_13430 PF00986 DNA gyrase B subunit, carboxyl terminus APY29_13430 PF01751 Toprim domain APY29_13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_13440 PF02698 DUF218 domain APY29_13445 PF01384 APY29_13445 APY29_13450 PF01865 Protein of unknown function DUF47 APY29_13455 PF00571 CBS domain APY29_13455 PF01595 APY29_13455 APY29_13455 PF03471 Transporter associated domain APY29_13460 PF06055 APY29_13460 APY29_13465 PF16242 APY29_13465 APY29_13470 PF00296 Luciferase-like monooxygenase APY29_13475 PF00083 Sugar (and other) transporter APY29_13480 PF00005 ABC transporter APY29_13490 PF04055 Radical SAM superfamily APY29_13495 PF14907 Uncharacterised nucleotidyltransferase APY29_13500 PF00534 Glycosyl transferases group 1 APY29_13500 PF13579 Glycosyl transferase 4-like domain APY29_13505 PF00534 Glycosyl transferases group 1 APY29_13505 PF13439 Glycosyltransferase Family 4 APY29_13510 PF08241 Methyltransferase domain APY29_13515 PF01979 Amidohydrolase family APY29_13520 PF13649 Methyltransferase domain APY29_13525 PF02706 Chain length determinant protein APY29_13535 PF00535 Glycosyl transferase family 2 APY29_13540 PF01943 APY29_13540 APY29_13545 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APY29_13550 PF13480 Acetyltransferase (GNAT) domain APY29_13560 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_13565 PF05523 WxcM-like, C-terminal APY29_13570 PF01292 Prokaryotic cytochrome b561 APY29_13580 PF00034 Cytochrome c APY29_13595 PF01527 Transposase APY29_13600 PF00665 Integrase core domain APY29_13605 PF01527 Transposase APY29_13615 PF01471 Putative peptidoglycan binding domain APY29_13615 PF13406 Transglycosylase SLT domain APY29_13620 PF01526 APY29_13620 APY29_13625 PF01527 Transposase APY29_13630 PF00665 Integrase core domain APY29_13630 PF13276 APY29_13630 APY29_13640 PF12760 Transposase zinc-ribbon domain APY29_13640 PF12762 APY29_13640 APY29_13655 PF04542 Sigma-70 region 2 APY29_13655 PF08281 Sigma-70, region 4 APY29_13660 PF13490 Putative zinc-finger APY29_13665 PF00082 Subtilase family APY29_13670 PF01578 APY29_13670 APY29_13675 PF04995 APY29_13675 APY29_13680 PF03100 CcmE APY29_13685 PF01578 APY29_13685 APY29_13685 PF16327 APY29_13685 APY29_13690 PF08534 Redoxin APY29_13695 PF03918 Cytochrome C biogenesis protein APY29_13705 PF00072 Response regulator receiver domain APY29_13705 PF00512 His Kinase A (phospho-acceptor) domain APY29_13705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_13705 PF08448 PAS fold APY29_13715 PF00072 Response regulator receiver domain APY29_13735 PF01047 MarR family APY29_13740 PF01494 FAD binding domain APY29_13745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_13745 PF12729 APY29_13745 APY29_13750 PF04343 APY29_13750 APY29_13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_13760 PF03466 LysR substrate binding domain APY29_13765 PF02525 Flavodoxin-like fold APY29_13770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY29_13770 PF02403 Seryl-tRNA synthetase N-terminal domain APY29_13775 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_13780 PF03544 Gram-negative bacterial TonB protein C-terminal APY29_13785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APY29_13795 PF00266 Aminotransferase class-V APY29_13800 PF00174 Oxidoreductase molybdopterin binding domain APY29_13805 PF01794 APY29_13805 APY29_13810 PF16697 APY29_13810 APY29_13815 PF09650 APY29_13815 APY29_13820 PF05597 APY29_13820 APY29_13825 PF04471 Restriction endonuclease APY29_13830 PF00392 Bacterial regulatory proteins, gntR family APY29_13830 PF07702 UTRA domain APY29_13840 PF01979 Amidohydrolase family APY29_13845 PF07969 Amidohydrolase family APY29_13850 PF00221 Aromatic amino acid lyase APY29_13855 PF05013 N-formylglutamate amidohydrolase APY29_13860 PF01175 Urocanase APY29_13860 PF17391 APY29_13860 APY29_13860 PF17392 APY29_13860 APY29_13870 PF13360 PQQ-like domain APY29_13875 PF00521 DNA gyrase/topoisomerase IV, subunit A APY29_13875 PF03989 DNA gyrase C-terminal domain, beta-propeller APY29_13880 PF01008 Initiation factor 2 subunit family APY29_13885 PF11218 APY29_13885 APY29_13890 PF00152 tRNA synthetases class II (D, K and N) APY29_13895 PF00533 BRCA1 C Terminus (BRCT) domain APY29_13895 PF01653 NAD-dependent DNA ligase adenylation domain APY29_13895 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APY29_13895 PF03120 NAD-dependent DNA ligase OB-fold domain APY29_13895 PF12826 Helix-hairpin-helix motif APY29_13900 PF00155 Aminotransferase class I and II APY29_13905 PF12760 Transposase zinc-ribbon domain APY29_13905 PF12762 APY29_13905 APY29_13915 PF04354 ZipA, C-terminal FtsZ-binding domain APY29_13920 PF02463 RecF/RecN/SMC N terminal domain APY29_13925 PF01281 Ribosomal protein L9, N-terminal domain APY29_13925 PF03948 Ribosomal protein L9, C-terminal domain APY29_13930 PF01084 Ribosomal protein S18 APY29_13935 PF01250 Ribosomal protein S6 APY29_13940 PF01521 Iron-sulphur cluster biosynthesis APY29_13945 PF00152 tRNA synthetases class II (D, K and N) APY29_13945 PF01336 OB-fold nucleic acid binding domain APY29_13965 PF04299 Putative FMN-binding domain APY29_13970 PF01527 Transposase APY29_13975 PF00665 Integrase core domain APY29_13985 PF00161 Ribosome inactivating protein APY29_13990 PF00072 Response regulator receiver domain APY29_13990 PF00196 Bacterial regulatory proteins, luxR family APY29_14020 PF11655 APY29_14020 APY29_14025 PF11655 APY29_14025 APY29_14030 PF05838 Glycosyl hydrolase 108 APY29_14030 PF09374 Predicted Peptidoglycan domain APY29_14035 PF00484 Carbonic anhydrase APY29_14040 PF06052 3-hydroxyanthranilic acid dioxygenase APY29_14050 PF00266 Aminotransferase class-V APY29_14055 PF01494 FAD binding domain APY29_14060 PF00929 Exonuclease APY29_14060 PF08411 Exonuclease C-terminal APY29_14065 PF09365 APY29_14065 APY29_14075 PF11159 APY29_14075 APY29_14080 PF06189 APY29_14080 APY29_14085 PF01513 ATP-NAD kinase APY29_14090 PF01170 Putative RNA methylase family UPF0020 APY29_14090 PF02926 THUMP domain APY29_14090 PF10672 S-adenosylmethionine-dependent methyltransferase APY29_14095 PF00005 ABC transporter APY29_14100 PF00583 Acetyltransferase (GNAT) family APY29_14110 PF03473 MOSC domain APY29_14115 PF01510 N-acetylmuramoyl-L-alanine amidase APY29_14120 PF07920 Protein of unknown function (DUF1684) APY29_14125 PF00581 Rhodanese-like domain APY29_14130 PF00293 NUDIX domain APY29_14130 PF06945 APY29_14130 APY29_14135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_14135 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APY29_14140 PF00378 Enoyl-CoA hydratase/isomerase family APY29_14150 PF00633 Helix-hairpin-helix motif APY29_14150 PF00730 HhH-GPD superfamily base excision DNA repair protein APY29_14155 PF00916 APY29_14155 APY29_14160 PF00484 Carbonic anhydrase APY29_14170 PF07396 Phosphate-selective porin O and P APY29_14175 PF12849 PBP superfamily domain APY29_14180 PF12849 PBP superfamily domain APY29_14185 PF00528 Binding-protein-dependent transport system inner membrane component APY29_14190 PF00528 Binding-protein-dependent transport system inner membrane component APY29_14195 PF00005 ABC transporter APY29_14200 PF01895 PhoU domain APY29_14205 PF11776 Domain of unknown function (DUF3315) APY29_14210 PF00929 Exonuclease APY29_14220 PF01609 Transposase DDE domain APY29_14220 PF05598 APY29_14220 APY29_14225 PF00588 SpoU rRNA Methylase family APY29_14225 PF08032 RNA 2'-O ribose methyltransferase substrate binding APY29_14230 PF04828 Glutathione-dependent formaldehyde-activating enzyme APY29_14235 PF00575 S1 RNA binding domain APY29_14235 PF00773 RNB domain APY29_14235 PF08206 Ribonuclease B OB domain APY29_14245 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_14250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_14250 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_14250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_14255 PF01022 Bacterial regulatory protein, arsR family APY29_14255 PF08241 Methyltransferase domain APY29_14260 PF02574 Homocysteine S-methyltransferase APY29_14265 PF00809 Pterin binding enzyme APY29_14265 PF02310 B12 binding domain APY29_14265 PF02607 B12 binding domain APY29_14265 PF02965 Vitamin B12 dependent methionine synthase, activation domain APY29_14270 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) APY29_14275 PF00294 pfkB family carbohydrate kinase APY29_14280 PF07690 Major Facilitator Superfamily APY29_14285 PF00356 Bacterial regulatory proteins, lacI family APY29_14285 PF13377 Periplasmic binding protein-like domain APY29_14290 PF13557 APY29_14290 APY29_14295 PF09831 APY29_14295 APY29_14300 PF04102 SlyX APY29_14305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY29_14305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY29_14305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY29_14310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_14310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APY29_14315 PF00255 Glutathione peroxidase APY29_14325 PF00392 Bacterial regulatory proteins, gntR family APY29_14330 PF00005 ABC transporter APY29_14345 PF11101 APY29_14345 APY29_14355 PF00206 Lyase APY29_14355 PF10415 Fumarase C C-terminus APY29_14360 PF00571 CBS domain APY29_14360 PF01595 APY29_14360 APY29_14360 PF03471 Transporter associated domain APY29_14365 PF00188 Cysteine-rich secretory protein family APY29_14380 PF08007 Cupin superfamily protein APY29_14385 PF13673 Acetyltransferase (GNAT) domain APY29_14390 PF00676 Dehydrogenase E1 component APY29_14390 PF02779 Transketolase, pyrimidine binding domain APY29_14390 PF16078 APY29_14390 APY29_14390 PF16870 APY29_14390 APY29_14395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY29_14395 PF00364 Biotin-requiring enzyme APY29_14395 PF02817 e3 binding domain APY29_14400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY29_14400 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_14405 PF03641 Possible lysine decarboxylase APY29_14410 PF01205 Uncharacterized protein family UPF0029 APY29_14410 PF09186 Domain of unknown function (DUF1949) APY29_14415 PF00005 ABC transporter APY29_14415 PF00664 ABC transporter transmembrane region APY29_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_14420 PF03466 LysR substrate binding domain APY29_14430 PF16576 APY29_14430 APY29_14435 PF02321 Outer membrane efflux protein APY29_14445 PF01842 ACT domain APY29_14445 PF02153 Prephenate dehydrogenase APY29_14450 PF08543 Phosphomethylpyrimidine kinase APY29_14455 PF00226 DnaJ domain APY29_14455 PF00684 DnaJ central domain APY29_14455 PF01556 DnaJ C terminal domain APY29_14460 PF00012 Hsp70 protein APY29_14465 PF01025 GrpE APY29_14470 PF01628 HrcA protein C terminal domain APY29_14470 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APY29_14475 PF02463 RecF/RecN/SMC N terminal domain APY29_14480 PF01475 Ferric uptake regulator family APY29_14485 PF04355 SmpA / OmlA family APY29_14490 PF03658 RnfH family Ubiquitin APY29_14495 PF03364 Polyketide cyclase / dehydrase and lipid transport APY29_14500 PF01668 SmpB protein APY29_14505 PF00082 Subtilase family APY29_14515 PF01527 Transposase APY29_14520 PF00665 Integrase core domain APY29_14530 PF00005 ABC transporter APY29_14530 PF00664 ABC transporter transmembrane region APY29_14530 PF03412 Peptidase C39 family APY29_14535 PF13437 HlyD family secretion protein APY29_14540 PF00665 Integrase core domain APY29_14540 PF13276 APY29_14540 APY29_14545 PF01527 Transposase APY29_14555 PF00990 GGDEF domain APY29_14555 PF05227 CHASE3 domain APY29_14555 PF13185 GAF domain APY29_14565 PF00990 GGDEF domain APY29_14570 PF02321 Outer membrane efflux protein APY29_14575 PF00106 short chain dehydrogenase APY29_14580 PF00873 AcrB/AcrD/AcrF family APY29_14585 PF16576 APY29_14585 APY29_14590 PF00106 short chain dehydrogenase APY29_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_14600 PF03466 LysR substrate binding domain APY29_14605 PF00691 OmpA family APY29_14605 PF13488 APY29_14605 APY29_14610 PF00875 DNA photolyase APY29_14610 PF03441 FAD binding domain of DNA photolyase APY29_14615 PF00772 DnaB-like helicase N terminal domain APY29_14615 PF03796 DnaB-like helicase C terminal domain APY29_14620 PF03358 NADPH-dependent FMN reductase APY29_14625 PF00733 Asparagine synthase APY29_14625 PF13537 Glutamine amidotransferase domain APY29_14635 PF00043 Glutathione S-transferase, C-terminal domain APY29_14635 PF02798 Glutathione S-transferase, N-terminal domain APY29_14645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_14645 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_14645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_14650 PF05433 APY29_14650 APY29_14655 PF01609 Transposase DDE domain APY29_14655 PF05598 APY29_14655 APY29_14665 PF01026 TatD related DNase APY29_14670 PF00899 ThiF family APY29_14680 PF05433 APY29_14680 APY29_14685 PF00313 'Cold-shock' DNA-binding domain APY29_14690 PF04306 APY29_14690 APY29_14700 PF00484 Carbonic anhydrase APY29_14705 PF02798 Glutathione S-transferase, N-terminal domain APY29_14705 PF14497 Glutathione S-transferase, C-terminal domain APY29_14715 PF05681 APY29_14715 APY29_14715 PF05683 Fumarase C-terminus APY29_14720 PF00005 ABC transporter APY29_14725 PF00175 Oxidoreductase NAD-binding domain APY29_14725 PF00970 Oxidoreductase FAD-binding domain APY29_14730 PF00255 Glutathione peroxidase APY29_14735 PF01432 Peptidase family M3 APY29_14740 PF01047 MarR family APY29_14750 PF14542 GCN5-related N-acetyl-transferase APY29_14760 PF01694 Rhomboid family APY29_14765 PF00854 POT family APY29_14770 PF00246 Zinc carboxypeptidase APY29_14775 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_14775 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY29_14775 PF14310 Fibronectin type III-like domain APY29_14785 PF07690 Major Facilitator Superfamily APY29_14790 PF00529 HlyD family secretion protein APY29_14790 PF16576 APY29_14790 APY29_14795 PF02321 Outer membrane efflux protein APY29_14800 PF01047 MarR family APY29_14810 PF00521 DNA gyrase/topoisomerase IV, subunit A APY29_14810 PF03989 DNA gyrase C-terminal domain, beta-propeller APY29_14815 PF05724 Thiopurine S-methyltransferase (TPMT) APY29_14820 PF00210 Ferritin-like domain APY29_14830 PF00593 TonB dependent receptor APY29_14830 PF07715 TonB-dependent Receptor Plug Domain APY29_14835 PF13229 Right handed beta helix region APY29_14840 PF00733 Asparagine synthase APY29_14840 PF13537 Glutamine amidotransferase domain APY29_14845 PF01546 Peptidase family M20/M25/M40 APY29_14845 PF07687 Peptidase dimerisation domain APY29_14850 PF03960 ArsC family APY29_14855 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_14855 PF14602 Hexapeptide repeat of succinyl-transferase APY29_14855 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APY29_14860 PF01909 Nucleotidyltransferase domain APY29_14860 PF01966 HD domain APY29_14860 PF08335 GlnD PII-uridylyltransferase APY29_14865 PF00557 Metallopeptidase family M24 APY29_14870 PF05229 APY29_14870 APY29_14875 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APY29_14880 PF00577 Outer membrane usher protein APY29_14880 PF13953 PapC C-terminal domain APY29_14885 PF05229 APY29_14885 APY29_14895 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APY29_14900 PF00318 Ribosomal protein S2 APY29_14905 PF00889 Elongation factor TS APY29_14910 PF00990 GGDEF domain APY29_14910 PF08668 HDOD domain APY29_14915 PF00696 Amino acid kinase family APY29_14920 PF01765 Ribosome recycling factor APY29_14925 PF01255 Putative undecaprenyl diphosphate synthase APY29_14930 PF01148 Cytidylyltransferase family APY29_14935 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APY29_14935 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal APY29_14935 PF13288 DXP reductoisomerase C-terminal domain APY29_14940 PF02163 Peptidase family M50 APY29_14945 PF01103 Surface antigen APY29_14945 PF07244 Surface antigen variable number repeat APY29_14955 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_14955 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APY29_14960 PF07977 FabA-like domain APY29_14965 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_14965 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APY29_14970 PF02684 APY29_14970 APY29_14975 PF01351 Ribonuclease HII APY29_14980 PF01336 OB-fold nucleic acid binding domain APY29_14980 PF02811 PHP domain APY29_14980 PF07733 Bacterial DNA polymerase III alpha subunit APY29_14980 PF14579 Helix-hairpin-helix motif APY29_14985 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APY29_14990 PF14559 Tetratricopeptide repeat APY29_15000 PF03653 APY29_15000 APY29_15005 PF13489 Methyltransferase domain APY29_15010 PF06850 APY29_15010 APY29_15015 PF13796 APY29_15015 APY29_15020 PF03551 Transcriptional regulator PadR-like family APY29_15025 PF13372 Alginate export APY29_15035 PF04367 APY29_15035 APY29_15040 PF02592 APY29_15040 APY29_15045 PF05960 Bacterial protein of unknown function (DUF885) APY29_15050 PF02574 Homocysteine S-methyltransferase APY29_15055 PF00324 Amino acid permease APY29_15060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_15065 PF00005 ABC transporter APY29_15070 PF01433 Peptidase family M1 APY29_15070 PF12679 APY29_15070 APY29_15075 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) APY29_15080 PF01588 Putative tRNA binding domain APY29_15080 PF09334 tRNA synthetases class I (M) APY29_15085 PF12710 haloacid dehalogenase-like hydrolase APY29_15090 PF04060 Putative Fe-S cluster APY29_15090 PF14697 4Fe-4S dicluster domain APY29_15110 PF04542 Sigma-70 region 2 APY29_15110 PF08281 Sigma-70, region 4 APY29_15115 PF10099 APY29_15115 APY29_15120 PF00487 APY29_15120 APY29_15125 PF01593 Flavin containing amine oxidoreductase APY29_15130 PF07103 APY29_15130 APY29_15135 PF02353 Mycolic acid cyclopropane synthetase APY29_15140 PF11086 APY29_15140 APY29_15145 PF06966 APY29_15145 APY29_15150 PF02353 Mycolic acid cyclopropane synthetase APY29_15155 PF01042 Endoribonuclease L-PSP APY29_15160 PF06197 APY29_15160 APY29_15165 PF03706 APY29_15165 APY29_15165 PF09924 Uncharacterized conserved protein (DUF2156) APY29_15170 PF06057 Bacterial virulence protein (VirJ) APY29_15175 PF09791 APY29_15175 APY29_15185 PF13563 2'-5' RNA ligase superfamily APY29_15190 PF09537 Domain of unknown function (DUF2383) APY29_15200 PF07690 Major Facilitator Superfamily APY29_15210 PF03831 PhnA protein APY29_15210 PF08274 PhnA Zinc-Ribbon APY29_15215 PF01545 Cation efflux family APY29_15220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY29_15225 PF06723 MreB/Mbl protein APY29_15240 PF00924 Mechanosensitive ion channel APY29_15245 PF01258 Prokaryotic dksA/traR C4-type zinc finger APY29_15250 PF10982 Protein of unknown function (DUF2789) APY29_15255 PF07043 APY29_15255 APY29_15260 PF00665 Integrase core domain APY29_15260 PF13276 APY29_15260 APY29_15265 PF01527 Transposase APY29_15270 PF01863 Protein of unknown function DUF45 APY29_15275 PF13640 2OG-Fe(II) oxygenase superfamily APY29_15280 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APY29_15280 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APY29_15285 PF00082 Subtilase family APY29_15285 PF03797 Autotransporter beta-domain APY29_15285 PF12951 APY29_15285 APY29_15290 PF00108 Thiolase, N-terminal domain APY29_15290 PF02803 Thiolase, C-terminal domain APY29_15305 PF00990 GGDEF domain APY29_15305 PF05227 CHASE3 domain APY29_15305 PF13185 GAF domain APY29_15310 PF04519 APY29_15310 APY29_15330 PF01068 ATP dependent DNA ligase domain APY29_15330 PF04675 DNA ligase N terminus APY29_15330 PF04679 ATP dependent DNA ligase C terminal region APY29_15335 PF00270 DEAD/DEAH box helicase APY29_15335 PF00271 Helicase conserved C-terminal domain APY29_15335 PF08494 APY29_15335 APY29_15340 PF00149 Calcineurin-like phosphoesterase APY29_15345 PF01494 FAD binding domain APY29_15350 PF00313 'Cold-shock' DNA-binding domain APY29_15355 PF01048 Phosphorylase superfamily APY29_15360 PF00156 Phosphoribosyl transferase domain APY29_15365 PF00933 Glycosyl hydrolase family 3 N terminal domain APY29_15370 PF04244 Deoxyribodipyrimidine photo-lyase-related protein APY29_15375 PF13450 NAD(P)-binding Rossmann-like domain APY29_15380 PF01323 DSBA-like thioredoxin domain APY29_15390 PF05958 tRNA (Uracil-5-)-methyltransferase APY29_15395 PF00072 Response regulator receiver domain APY29_15395 PF01627 Hpt domain APY29_15400 PF02565 Recombination protein O C terminal APY29_15400 PF11967 Recombination protein O N terminal APY29_15405 PF01926 50S ribosome-binding GTPase APY29_15405 PF07650 KH domain APY29_15410 PF00035 Double-stranded RNA binding motif APY29_15410 PF14622 Ribonuclease-III-like APY29_15415 PF16137 APY29_15415 APY29_15420 PF00717 Peptidase S24-like APY29_15425 PF00009 Elongation factor Tu GTP binding domain APY29_15425 PF00679 Elongation factor G C-terminus APY29_15425 PF03144 Elongation factor Tu domain 2 APY29_15425 PF06421 GTP-binding protein LepA C-terminus APY29_15430 PF13180 PDZ domain APY29_15430 PF13365 Trypsin-like peptidase domain APY29_15435 PF03872 Anti sigma-E protein RseA, N-terminal domain APY29_15440 PF04542 Sigma-70 region 2 APY29_15440 PF08281 Sigma-70, region 4 APY29_15445 PF00378 Enoyl-CoA hydratase/isomerase family APY29_15445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY29_15445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY29_15450 PF01545 Cation efflux family APY29_15455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY29_15455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APY29_15460 PF16113 APY29_15460 APY29_15465 PF00378 Enoyl-CoA hydratase/isomerase family APY29_15470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_15470 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_15470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_15475 PF00171 Aldehyde dehydrogenase family APY29_15480 PF06114 Domain of unknown function (DUF955) APY29_15480 PF09856 APY29_15480 APY29_15480 PF13560 Helix-turn-helix domain APY29_15485 PF00593 TonB dependent receptor APY29_15485 PF07715 TonB-dependent Receptor Plug Domain APY29_15490 PF07745 Glycosyl hydrolase family 53 APY29_15495 PF00703 Glycosyl hydrolases family 2 APY29_15495 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_15495 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_15495 PF16355 APY29_15495 APY29_15505 PF00754 F5/8 type C domain APY29_15505 PF01120 Alpha-L-fucosidase APY29_15510 PF01609 Transposase DDE domain APY29_15510 PF05598 APY29_15510 APY29_15515 PF01527 Transposase APY29_15520 PF00665 Integrase core domain APY29_15530 PF00665 Integrase core domain APY29_15535 PF01527 Transposase APY29_15550 PF05593 APY29_15550 APY29_15560 PF00488 MutS domain V APY29_15560 PF01624 MutS domain I APY29_15560 PF05188 MutS domain II APY29_15560 PF05190 MutS family domain IV APY29_15560 PF05192 MutS domain III APY29_15565 PF06078 Bacterial protein of unknown function (DUF937) APY29_15570 PF00141 Peroxidase APY29_15575 PF01479 S4 domain APY29_15580 PF00043 Glutathione S-transferase, C-terminal domain APY29_15580 PF13417 Glutathione S-transferase, N-terminal domain APY29_15585 PF08279 HTH domain APY29_15585 PF13280 APY29_15585 APY29_15595 PF01554 MatE APY29_15600 PF01245 Ribosomal protein L19 APY29_15605 PF01746 tRNA (Guanine-1)-methyltransferase APY29_15610 PF01782 RimM N-terminal domain APY29_15610 PF05239 PRC-barrel domain APY29_15615 PF00886 Ribosomal protein S16 APY29_15620 PF01063 Aminotransferase class IV APY29_15625 PF03060 Nitronate monooxygenase APY29_15630 PF00448 SRP54-type protein, GTPase domain APY29_15630 PF02881 SRP54-type protein, helical bundle domain APY29_15630 PF02978 Signal peptide binding domain APY29_15635 PF01578 APY29_15635 APY29_15645 PF01263 Aldose 1-epimerase APY29_15655 PF06964 Alpha-L-arabinofuranosidase C-terminus APY29_15660 PF00722 Glycosyl hydrolases family 16 APY29_15665 PF00072 Response regulator receiver domain APY29_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15670 PF13426 PAS domain APY29_15675 PF00072 Response regulator receiver domain APY29_15675 PF00512 His Kinase A (phospho-acceptor) domain APY29_15675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15675 PF13185 GAF domain APY29_15680 PF01739 CheR methyltransferase, SAM binding domain APY29_15680 PF03705 CheR methyltransferase, all-alpha domain APY29_15685 PF01339 CheB methylesterase APY29_15690 PF00072 Response regulator receiver domain APY29_15690 PF00512 His Kinase A (phospho-acceptor) domain APY29_15690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15695 PF07237 Protein of unknown function (DUF1428) APY29_15700 PF00085 Thioredoxin APY29_15705 PF00593 TonB dependent receptor APY29_15705 PF07715 TonB-dependent Receptor Plug Domain APY29_15710 PF04616 Glycosyl hydrolases family 43 APY29_15715 PF00072 Response regulator receiver domain APY29_15715 PF00512 His Kinase A (phospho-acceptor) domain APY29_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15715 PF08448 PAS fold APY29_15720 PF00512 His Kinase A (phospho-acceptor) domain APY29_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15725 PF07228 Stage II sporulation protein E (SpoIIE) APY29_15725 PF13581 Histidine kinase-like ATPase domain APY29_15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15740 PF01740 STAS domain APY29_15740 PF14361 APY29_15740 APY29_15750 PF00183 Hsp90 protein APY29_15750 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_15755 PF12833 Helix-turn-helix domain APY29_15760 PF00486 Transcriptional regulatory protein, C terminal APY29_15765 PF05656 APY29_15765 APY29_15770 PF13481 AAA domain APY29_15770 PF13541 Subunit ChlI of Mg-chelatase APY29_15775 PF05299 M61 glycyl aminopeptidase APY29_15775 PF07720 Tetratricopeptide repeat APY29_15780 PF03626 APY29_15780 APY29_15785 PF00510 Cytochrome c oxidase subunit III APY29_15790 PF00115 Cytochrome C and Quinol oxidase polypeptide I APY29_15795 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APY29_15795 PF06481 COX Aromatic Rich Motif APY29_15800 PF00589 Phage integrase family APY29_15835 PF13086 AAA domain APY29_15835 PF13087 AAA domain APY29_15835 PF13091 PLD-like domain APY29_15840 PF03389 MobA/MobL family APY29_15845 PF01527 Transposase APY29_15850 PF00665 Integrase core domain APY29_15850 PF13276 APY29_15850 APY29_15860 PF06412 APY29_15860 APY29_15890 PF01551 Peptidase family M23 APY29_15910 PF01527 Transposase APY29_15915 PF00665 Integrase core domain APY29_15940 PF02401 LytB protein APY29_15945 PF01252 APY29_15945 APY29_15950 PF00133 tRNA synthetases class I (I, L, M and V) APY29_15950 PF06827 Zinc finger found in FPG and IleRS APY29_15950 PF08264 Anticodon-binding domain of tRNA APY29_15955 PF01687 Riboflavin kinase APY29_15955 PF06574 FAD synthetase APY29_15960 PF03023 APY29_15960 APY29_15965 PF01649 Ribosomal protein S20 APY29_15970 PF01018 GTP1/OBG APY29_15970 PF01926 50S ribosome-binding GTPase APY29_15975 PF01016 Ribosomal L27 protein APY29_15980 PF00829 Ribosomal prokaryotic L21 protein APY29_15985 PF00005 ABC transporter APY29_15990 PF13279 Thioesterase-like superfamily APY29_15995 PF04314 Protein of unknown function (DUF461) APY29_16000 PF00378 Enoyl-CoA hydratase/isomerase family APY29_16005 PF13622 Thioesterase-like superfamily APY29_16010 PF09413 Domain of unknown function (DUF2007) APY29_16025 PF13202 EF hand APY29_16025 PF13499 EF-hand domain pair APY29_16030 PF04376 APY29_16030 APY29_16030 PF04377 APY29_16030 APY29_16035 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_16040 PF02222 ATP-grasp domain APY29_16045 PF01145 SPFH domain / Band 7 family APY29_16060 PF02557 D-alanyl-D-alanine carboxypeptidase APY29_16065 PF00730 HhH-GPD superfamily base excision DNA repair protein APY29_16070 PF04241 APY29_16070 APY29_16075 PF10604 Polyketide cyclase / dehydrase and lipid transport APY29_16080 PF00072 Response regulator receiver domain APY29_16080 PF00196 Bacterial regulatory proteins, luxR family APY29_16085 PF07730 Histidine kinase APY29_16095 PF00583 Acetyltransferase (GNAT) family APY29_16100 PF03775 Septum formation inhibitor MinC, C-terminal domain APY29_16100 PF05209 Septum formation inhibitor MinC, N-terminal domain APY29_16105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_16110 PF03776 Septum formation topological specificity factor MinE APY29_16120 PF00512 His Kinase A (phospho-acceptor) domain APY29_16120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_16125 PF00072 Response regulator receiver domain APY29_16125 PF00486 Transcriptional regulatory protein, C terminal APY29_16130 PF13231 APY29_16130 APY29_16135 PF01569 PAP2 superfamily APY29_16140 PF00884 Sulfatase APY29_16140 PF08019 APY29_16140 APY29_16145 PF01401 Angiotensin-converting enzyme APY29_16155 PF07690 Major Facilitator Superfamily APY29_16160 PF02347 Glycine cleavage system P-protein APY29_16165 PF00135 Carboxylesterase family APY29_16170 PF00248 Aldo/keto reductase family APY29_16175 PF00199 Catalase APY29_16175 PF06628 Catalase-related immune-responsive APY29_16185 PF01527 Transposase APY29_16190 PF00665 Integrase core domain APY29_16210 PF08448 PAS fold APY29_16210 PF12833 Helix-turn-helix domain APY29_16230 PF01527 Transposase APY29_16235 PF00665 Integrase core domain APY29_16240 PF00326 Prolyl oligopeptidase family APY29_16240 PF07676 WD40-like Beta Propeller Repeat APY29_16250 PF13557 APY29_16250 APY29_16255 PF03169 APY29_16255 APY29_16260 PF08668 HDOD domain APY29_16265 PF00326 Prolyl oligopeptidase family APY29_16270 PF02811 PHP domain APY29_16270 PF07733 Bacterial DNA polymerase III alpha subunit APY29_16270 PF14579 Helix-hairpin-helix motif APY29_16275 PF00817 impB/mucB/samB family APY29_16285 PF00717 Peptidase S24-like APY29_16285 PF01726 LexA DNA binding domain APY29_16290 PF04014 Antidote-toxin recognition MazE APY29_16295 PF02661 Fic/DOC family APY29_16305 PF07883 Cupin domain APY29_16315 PF05559 APY29_16315 APY29_16320 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_16320 PF01799 [2Fe-2S] binding domain APY29_16325 PF00941 FAD binding domain in molybdopterin dehydrogenase APY29_16325 PF03450 CO dehydrogenase flavoprotein C-terminal domain APY29_16330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY29_16330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APY29_16335 PF00005 ABC transporter APY29_16345 PF13328 HD domain APY29_16350 PF00563 EAL domain APY29_16355 PF02148 Zn-finger in ubiquitin-hydrolases and other protein APY29_16365 PF13532 2OG-Fe(II) oxygenase superfamily APY29_16370 PF00106 short chain dehydrogenase APY29_16375 PF01527 Transposase APY29_16380 PF00665 Integrase core domain APY29_16380 PF13276 APY29_16380 APY29_16385 PF07971 Glycosyl hydrolase family 92 APY29_16390 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_16400 PF02055 O-Glycosyl hydrolase family 30 APY29_16400 PF17189 APY29_16400 APY29_16405 PF01256 Carbohydrate kinase APY29_16410 PF00300 Histidine phosphatase superfamily (branch 1) APY29_16415 PF00440 Bacterial regulatory proteins, tetR family APY29_16425 PF04851 Type III restriction enzyme, res subunit APY29_16430 PF01555 DNA methylase APY29_16435 PF10592 APY29_16435 APY29_16440 PF13304 AAA domain APY29_16445 PF00176 SNF2 family N-terminal domain APY29_16445 PF00271 Helicase conserved C-terminal domain APY29_16450 PF05016 Plasmid stabilisation system protein APY29_16470 PF00440 Bacterial regulatory proteins, tetR family APY29_16475 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_16485 PF01433 Peptidase family M1 APY29_16485 PF11838 ERAP1-like C-terminal domain APY29_16490 PF00709 Adenylosuccinate synthetase APY29_16495 PF01797 Transposase IS200 like APY29_16500 PF01145 SPFH domain / Band 7 family APY29_16505 PF01145 SPFH domain / Band 7 family APY29_16510 PF00072 Response regulator receiver domain APY29_16515 PF00226 DnaJ domain APY29_16515 PF01556 DnaJ C terminal domain APY29_16520 PF00011 Hsp20/alpha crystallin family APY29_16525 PF08534 Redoxin APY29_16530 PF00210 Ferritin-like domain APY29_16535 PF00905 Penicillin binding protein transpeptidase domain APY29_16535 PF00912 Transglycosylase APY29_16535 PF06832 APY29_16535 APY29_16540 PF03009 Glycerophosphoryl diester phosphodiesterase family APY29_16540 PF16387 APY29_16540 APY29_16545 PF00593 TonB dependent receptor APY29_16545 PF07715 TonB-dependent Receptor Plug Domain APY29_16550 PF00207 Alpha-2-macroglobulin family APY29_16550 PF01835 MG2 domain APY29_16550 PF07703 Alpha-2-macroglobulin family N-terminal region APY29_16550 PF11974 Alpha-2-macroglobulin MG1 domain APY29_16555 PF01156 Inosine-uridine preferring nucleoside hydrolase APY29_16560 PF00593 TonB dependent receptor APY29_16560 PF07715 TonB-dependent Receptor Plug Domain APY29_16565 PF04303 PrpF protein APY29_16575 PF00330 Aconitase family (aconitate hydratase) APY29_16575 PF00694 Aconitase C-terminal domain APY29_16580 PF00285 Citrate synthase APY29_16585 PF13714 Phosphoenolpyruvate phosphomutase APY29_16590 PF00158 Sigma-54 interaction domain APY29_16590 PF02954 Bacterial regulatory protein, Fis family APY29_16590 PF06506 Propionate catabolism activator APY29_16605 PF07238 PilZ domain APY29_16610 PF13177 DNA polymerase III, delta subunit APY29_16615 PF02618 YceG-like family APY29_16620 PF00425 chorismate binding enzyme APY29_16625 PF00109 Beta-ketoacyl synthase, N-terminal domain APY29_16625 PF02801 Beta-ketoacyl synthase, C-terminal domain APY29_16630 PF00550 Phosphopantetheine attachment site APY29_16635 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_16640 PF00698 Acyl transferase domain APY29_16645 PF08670 APY29_16645 APY29_16650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_16650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_16655 PF01783 Ribosomal L32p protein family APY29_16660 PF02620 APY29_16660 APY29_16665 PF02545 Maf-like protein APY29_16675 PF00535 Glycosyl transferase family 2 APY29_16680 PF13231 APY29_16680 APY29_16685 PF07726 ATPase family associated with various cellular activities (AAA) APY29_16690 PF01882 APY29_16690 APY29_16695 PF01841 Transglutaminase-like superfamily APY29_16695 PF11992 APY29_16695 APY29_16700 PF03843 APY29_16700 APY29_16705 PF01230 HIT domain APY29_16710 PF02132 RecR protein APY29_16710 PF13662 Toprim domain APY29_16715 PF02575 YbaB/EbfC DNA-binding family APY29_16720 PF12169 DNA polymerase III subunits gamma and tau domain III APY29_16720 PF12170 DNA polymerase III tau subunit V interacting with alpha APY29_16720 PF13177 DNA polymerase III, delta subunit APY29_16730 PF02391 MoaE protein APY29_16735 PF02597 ThiS family APY29_16740 PF01967 MoaC family APY29_16750 PF04055 Radical SAM superfamily APY29_16750 PF06463 Molybdenum Cofactor Synthesis C APY29_16750 PF13353 4Fe-4S single cluster domain APY29_16755 PF12706 Beta-lactamase superfamily domain APY29_16760 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family APY29_16765 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APY29_16780 PF13672 Protein phosphatase 2C APY29_16785 PF00929 Exonuclease APY29_16790 PF00075 RNase H APY29_16800 PF00753 Metallo-beta-lactamase superfamily APY29_16800 PF16123 APY29_16800 APY29_16805 PF01464 Transglycosylase SLT domain APY29_16805 PF01476 LysM domain APY29_16810 PF13145 PPIC-type PPIASE domain APY29_16810 PF13616 PPIC-type PPIASE domain APY29_16810 PF13623 APY29_16810 APY29_16830 PF00216 Bacterial DNA-binding protein APY29_16835 PF00004 ATPase family associated with various cellular activities (AAA) APY29_16835 PF02190 ATP-dependent protease La (LON) domain APY29_16835 PF05362 Lon protease (S16) C-terminal proteolytic domain APY29_16840 PF06689 ClpX C4-type zinc finger APY29_16840 PF07724 AAA domain (Cdc48 subfamily) APY29_16840 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_16845 PF00574 Clp protease APY29_16850 PF05697 Bacterial trigger factor protein (TF) APY29_16850 PF05698 Bacterial trigger factor protein (TF) C-terminus APY29_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_16860 PF08448 PAS fold APY29_16885 PF12811 APY29_16885 APY29_16890 PF00180 Isocitrate/isopropylmalate dehydrogenase APY29_16895 PF02627 Carboxymuconolactone decarboxylase family APY29_16900 PF00462 Glutaredoxin APY29_16905 PF01435 Peptidase family M48 APY29_16910 PF00072 Response regulator receiver domain APY29_16910 PF00486 Transcriptional regulatory protein, C terminal APY29_16915 PF00512 His Kinase A (phospho-acceptor) domain APY29_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_16915 PF11808 APY29_16915 APY29_16920 PF02503 Polyphosphate kinase middle domain APY29_16920 PF13089 Polyphosphate kinase N-terminal domain APY29_16920 PF13090 Polyphosphate kinase C-terminal domain APY29_16925 PF02541 Ppx/GppA phosphatase family APY29_16935 PF01569 PAP2 superfamily APY29_16940 PF00149 Calcineurin-like phosphoesterase APY29_16950 PF13688 Metallo-peptidase family M12 APY29_16960 PF01527 Transposase APY29_16965 PF00665 Integrase core domain APY29_16975 PF13522 Glutamine amidotransferase domain APY29_16980 PF02674 APY29_16980 APY29_16985 PF05036 Sporulation related domain APY29_16990 PF08245 Mur ligase middle domain APY29_16995 PF00300 Histidine phosphatase superfamily (branch 1) APY29_17000 PF10459 Peptidase S46 APY29_17005 PF10459 Peptidase S46 APY29_17010 PF04185 Phosphoesterase family APY29_17010 PF05506 APY29_17010 APY29_17015 PF00593 TonB dependent receptor APY29_17015 PF07715 TonB-dependent Receptor Plug Domain APY29_17020 PF00107 Zinc-binding dehydrogenase APY29_17020 PF08240 Alcohol dehydrogenase GroES-like domain APY29_17025 PF09694 APY29_17025 APY29_17030 PF00005 ABC transporter APY29_17030 PF12857 APY29_17030 APY29_17035 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17040 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17045 PF13531 Bacterial extracellular solute-binding protein APY29_17050 PF00155 Aminotransferase class I and II APY29_17060 PF00849 RNA pseudouridylate synthase APY29_17060 PF01479 S4 domain APY29_17070 PF00691 OmpA family APY29_17070 PF13505 Outer membrane protein beta-barrel domain APY29_17075 PF08240 Alcohol dehydrogenase GroES-like domain APY29_17075 PF13602 Zinc-binding dehydrogenase APY29_17080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APY29_17080 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_17085 PF07486 Cell Wall Hydrolase APY29_17090 PF00043 Glutathione S-transferase, C-terminal domain APY29_17090 PF02798 Glutathione S-transferase, N-terminal domain APY29_17095 PF00056 lactate/malate dehydrogenase, NAD binding domain APY29_17095 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APY29_17100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APY29_17105 PF00009 Elongation factor Tu GTP binding domain APY29_17105 PF00679 Elongation factor G C-terminus APY29_17105 PF03144 Elongation factor Tu domain 2 APY29_17110 PF09900 APY29_17110 APY29_17120 PF00924 Mechanosensitive ion channel APY29_17125 PF01474 Class-II DAHP synthetase family APY29_17130 PF00593 TonB dependent receptor APY29_17130 PF07715 TonB-dependent Receptor Plug Domain APY29_17140 PF02600 Disulfide bond formation protein DsbB APY29_17145 PF01196 Ribosomal protein L17 APY29_17150 PF01000 RNA polymerase Rpb3/RpoA insert domain APY29_17150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APY29_17150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APY29_17155 PF00163 Ribosomal protein S4/S9 N-terminal domain APY29_17155 PF01479 S4 domain APY29_17160 PF00411 Ribosomal protein S11 APY29_17165 PF00416 Ribosomal protein S13/S18 APY29_17170 PF00344 SecY translocase APY29_17175 PF00828 Ribosomal protein L18e/L15 APY29_17180 PF00327 Ribosomal protein L30p/L7e APY29_17185 PF00333 Ribosomal protein S5, N-terminal domain APY29_17185 PF03719 Ribosomal protein S5, C-terminal domain APY29_17190 PF00861 Ribosomal L18p/L5e family APY29_17195 PF00347 Ribosomal protein L6 APY29_17200 PF00410 Ribosomal protein S8 APY29_17205 PF00253 Ribosomal protein S14p/S29e APY29_17210 PF00281 Ribosomal protein L5 APY29_17210 PF00673 ribosomal L5P family C-terminus APY29_17215 PF00467 KOW motif APY29_17215 PF17136 APY29_17215 APY29_17220 PF00238 Ribosomal protein L14p/L23e APY29_17225 PF00366 Ribosomal protein S17 APY29_17230 PF00831 Ribosomal L29 protein APY29_17235 PF00252 Ribosomal protein L16p/L10e APY29_17240 PF00189 Ribosomal protein S3, C-terminal domain APY29_17240 PF07650 KH domain APY29_17245 PF00237 Ribosomal protein L22p/L17e APY29_17250 PF00203 Ribosomal protein S19 APY29_17255 PF00181 Ribosomal Proteins L2, RNA binding domain APY29_17255 PF03947 Ribosomal Proteins L2, C-terminal domain APY29_17260 PF00276 Ribosomal protein L23 APY29_17265 PF00573 Ribosomal protein L4/L1 family APY29_17270 PF00297 Ribosomal protein L3 APY29_17275 PF00338 Ribosomal protein S10p/S20e APY29_17280 PF00009 Elongation factor Tu GTP binding domain APY29_17280 PF03143 Elongation factor Tu C-terminal domain APY29_17280 PF03144 Elongation factor Tu domain 2 APY29_17285 PF00009 Elongation factor Tu GTP binding domain APY29_17285 PF00679 Elongation factor G C-terminus APY29_17285 PF03144 Elongation factor Tu domain 2 APY29_17285 PF03764 Elongation factor G, domain IV APY29_17285 PF14492 Elongation Factor G, domain II APY29_17290 PF00177 Ribosomal protein S7p/S5e APY29_17295 PF00164 Ribosomal protein S12/S23 APY29_17300 PF00623 RNA polymerase Rpb1, domain 2 APY29_17300 PF04983 RNA polymerase Rpb1, domain 3 APY29_17300 PF04997 RNA polymerase Rpb1, domain 1 APY29_17300 PF04998 RNA polymerase Rpb1, domain 5 APY29_17300 PF05000 RNA polymerase Rpb1, domain 4 APY29_17305 PF00562 RNA polymerase Rpb2, domain 6 APY29_17305 PF04560 RNA polymerase Rpb2, domain 7 APY29_17305 PF04561 RNA polymerase Rpb2, domain 2 APY29_17305 PF04563 RNA polymerase beta subunit APY29_17305 PF04565 RNA polymerase Rpb2, domain 3 APY29_17305 PF10385 RNA polymerase beta subunit external 1 domain APY29_17310 PF00542 Ribosomal protein L7/L12 C-terminal domain APY29_17310 PF16320 APY29_17310 APY29_17315 PF00466 Ribosomal protein L10 APY29_17320 PF00687 Ribosomal protein L1p/L10e family APY29_17325 PF00298 Ribosomal protein L11, RNA binding domain APY29_17325 PF03946 Ribosomal protein L11, N-terminal domain APY29_17330 PF00467 KOW motif APY29_17330 PF02357 Transcription termination factor nusG APY29_17335 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APY29_17345 PF00009 Elongation factor Tu GTP binding domain APY29_17345 PF03143 Elongation factor Tu C-terminal domain APY29_17345 PF03144 Elongation factor Tu domain 2 APY29_17365 PF01926 50S ribosome-binding GTPase APY29_17365 PF06071 Protein of unknown function (DUF933) APY29_17370 PF01195 Peptidyl-tRNA hydrolase APY29_17375 PF01386 Ribosomal L25p family APY29_17375 PF14693 Ribosomal protein TL5, C-terminal domain APY29_17380 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APY29_17380 PF14572 Phosphoribosyl synthetase-associated domain APY29_17390 PF00288 GHMP kinases N terminal domain APY29_17390 PF08544 GHMP kinases C terminal APY29_17395 PF03550 Outer membrane lipoprotein LolB APY29_17400 PF13181 Tetratricopeptide repeat APY29_17400 PF13432 Tetratricopeptide repeat APY29_17400 PF14559 Tetratricopeptide repeat APY29_17405 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APY29_17405 PF01488 Shikimate / quinate 5-dehydrogenase APY29_17405 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APY29_17410 PF00472 RF-1 domain APY29_17410 PF03462 PCRF domain APY29_17415 PF13844 Glycosyl transferase family 41 APY29_17415 PF14559 Tetratricopeptide repeat APY29_17420 PF00994 Probable molybdopterin binding domain APY29_17425 PF03976 Polyphosphate kinase 2 (PPK2) APY29_17435 PF00708 Acylphosphatase APY29_17440 PF00578 AhpC/TSA family APY29_17445 PF03631 APY29_17445 APY29_17450 PF03358 NADPH-dependent FMN reductase APY29_17455 PF09842 APY29_17455 APY29_17460 PF02055 O-Glycosyl hydrolase family 30 APY29_17460 PF17189 APY29_17460 APY29_17465 PF00710 Asparaginase APY29_17470 PF04073 Aminoacyl-tRNA editing domain APY29_17475 PF00082 Subtilase family APY29_17475 PF04151 Bacterial pre-peptidase C-terminal domain APY29_17490 PF01063 Aminotransferase class IV APY29_17495 PF01883 Domain of unknown function DUF59 APY29_17505 PF02233 NAD(P) transhydrogenase beta subunit APY29_17510 PF12769 Domain of unknown function (DUF3814) APY29_17515 PF04542 Sigma-70 region 2 APY29_17515 PF08281 Sigma-70, region 4 APY29_17525 PF11304 APY29_17525 APY29_17530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APY29_17530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APY29_17535 PF00440 Bacterial regulatory proteins, tetR family APY29_17535 PF13305 WHG domain APY29_17540 PF12146 Putative lysophospholipase APY29_17545 PF07793 APY29_17545 APY29_17550 PF07793 APY29_17550 APY29_17555 PF00881 Nitroreductase family APY29_17560 PF01367 5'-3' exonuclease, C-terminal SAM fold APY29_17560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APY29_17565 PF00293 NUDIX domain APY29_17570 PF05013 N-formylglutamate amidohydrolase APY29_17575 PF00561 alpha/beta hydrolase fold APY29_17580 PF05175 Methyltransferase small domain APY29_17585 PF00578 AhpC/TSA family APY29_17585 PF10417 C-terminal domain of 1-Cys peroxiredoxin APY29_17590 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY29_17590 PF13192 Thioredoxin domain APY29_17595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_17595 PF03466 LysR substrate binding domain APY29_17600 PF01272 Transcription elongation factor, GreA/GreB, C-term APY29_17600 PF14760 Rnk N-terminus APY29_17605 PF00923 Transaldolase APY29_17610 PF01965 DJ-1/PfpI family APY29_17615 PF01625 Peptide methionine sulfoxide reductase APY29_17620 PF08332 Calcium/calmodulin dependent protein kinase II Association APY29_17625 PF00196 Bacterial regulatory proteins, luxR family APY29_17630 PF00072 Response regulator receiver domain APY29_17630 PF00512 His Kinase A (phospho-acceptor) domain APY29_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_17630 PF05227 CHASE3 domain APY29_17635 PF00072 Response regulator receiver domain APY29_17640 PF09413 Domain of unknown function (DUF2007) APY29_17645 PF13409 Glutathione S-transferase, N-terminal domain APY29_17650 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY29_17650 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APY29_17680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APY29_17690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY29_17695 PF08450 SMP-30/Gluconolaconase/LRE-like region APY29_17705 PF13202 EF hand APY29_17710 PF12802 MarR family APY29_17715 PF00378 Enoyl-CoA hydratase/isomerase family APY29_17720 PF00171 Aldehyde dehydrogenase family APY29_17725 PF00501 AMP-binding enzyme APY29_17725 PF13193 AMP-binding enzyme C-terminal domain APY29_17730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_17730 PF03466 LysR substrate binding domain APY29_17735 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit APY29_17740 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY29_17745 PF00392 Bacterial regulatory proteins, gntR family APY29_17745 PF07729 FCD domain APY29_17750 PF13557 APY29_17750 APY29_17755 PF13577 SnoaL-like domain APY29_17760 PF12697 Alpha/beta hydrolase family APY29_17765 PF01494 FAD binding domain APY29_17770 PF01494 FAD binding domain APY29_17780 PF01923 Cobalamin adenosyltransferase APY29_17785 PF00850 Histone deacetylase domain APY29_17790 PF00850 Histone deacetylase domain APY29_17795 PF03968 OstA-like protein APY29_17795 PF04453 Organic solvent tolerance protein APY29_17800 PF00639 PPIC-type PPIASE domain APY29_17800 PF09312 SurA N-terminal domain APY29_17800 PF13616 PPIC-type PPIASE domain APY29_17805 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APY29_17810 PF00398 Ribosomal RNA adenine dimethylase APY29_17815 PF04379 Protein of unknown function (DUF525) APY29_17820 PF00149 Calcineurin-like phosphoesterase APY29_17825 PF00005 ABC transporter APY29_17825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APY29_17830 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17835 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APY29_17845 PF00296 Luciferase-like monooxygenase APY29_17850 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APY29_17860 PF00593 TonB dependent receptor APY29_17860 PF07715 TonB-dependent Receptor Plug Domain APY29_17865 PF03358 NADPH-dependent FMN reductase APY29_17870 PF00296 Luciferase-like monooxygenase APY29_17875 PF09084 NMT1/THI5 like APY29_17880 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17885 PF00005 ABC transporter APY29_17890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_17890 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APY29_17895 PF00158 Sigma-54 interaction domain APY29_17900 PF00186 Dihydrofolate reductase APY29_17910 PF00303 Thymidylate synthase APY29_17915 PF01790 APY29_17915 APY29_17920 PF04536 TLP18 APY29_17925 PF04536 TLP18 APY29_17930 PF04011 LemA family APY29_17935 PF01219 Prokaryotic diacylglycerol kinase APY29_17940 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_17950 PF00072 Response regulator receiver domain APY29_17950 PF00486 Transcriptional regulatory protein, C terminal APY29_17955 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_17960 PF00005 ABC transporter APY29_17965 PF02687 APY29_17965 APY29_17970 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APY29_17975 PF13379 NMT1-like family APY29_17980 PF00005 ABC transporter APY29_17985 PF00528 Binding-protein-dependent transport system inner membrane component APY29_17990 PF04342 APY29_17990 APY29_18005 PF00593 TonB dependent receptor APY29_18005 PF07715 TonB-dependent Receptor Plug Domain APY29_18010 PF10636 Hemin uptake protein hemP APY29_18015 PF00248 Aldo/keto reductase family APY29_18020 PF01773 Na+ dependent nucleoside transporter N-terminus APY29_18020 PF07662 Na+ dependent nucleoside transporter C-terminus APY29_18020 PF07670 Nucleoside recognition APY29_18025 PF00294 pfkB family carbohydrate kinase APY29_18035 PF01207 Dihydrouridine synthase (Dus) APY29_18040 PF08241 Methyltransferase domain APY29_18045 PF04307 APY29_18045 APY29_18050 PF00438 S-adenosylmethionine synthetase, N-terminal domain APY29_18050 PF02772 S-adenosylmethionine synthetase, central domain APY29_18050 PF02773 S-adenosylmethionine synthetase, C-terminal domain APY29_18055 PF00328 Histidine phosphatase superfamily (branch 2) APY29_18060 PF00593 TonB dependent receptor APY29_18060 PF07715 TonB-dependent Receptor Plug Domain APY29_18075 PF13387 APY29_18075 APY29_18080 PF00440 Bacterial regulatory proteins, tetR family APY29_18085 PF00311 Phosphoenolpyruvate carboxylase APY29_18090 PF00326 Prolyl oligopeptidase family APY29_18095 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APY29_18095 PF05221 S-adenosyl-L-homocysteine hydrolase APY29_18100 PF13649 Methyltransferase domain APY29_18105 PF00685 Sulfotransferase domain APY29_18115 PF11539 Protein of unknown function (DUF3228) APY29_18120 PF09831 APY29_18120 APY29_18130 PF00128 Alpha amylase, catalytic domain APY29_18135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY29_18150 PF00082 Subtilase family APY29_18150 PF09286 Pro-kumamolisin, activation domain APY29_18155 PF08240 Alcohol dehydrogenase GroES-like domain APY29_18155 PF13602 Zinc-binding dehydrogenase APY29_18160 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_18165 PF02219 Methylenetetrahydrofolate reductase APY29_18175 PF00293 NUDIX domain APY29_18175 PF02581 Thiamine monophosphate synthase/TENI APY29_18180 PF01043 SecA preprotein cross-linking domain APY29_18180 PF02810 SEC-C motif APY29_18180 PF07516 SecA Wing and Scaffold domain APY29_18180 PF07517 SecA DEAD-like domain APY29_18185 PF01551 Peptidase family M23 APY29_18190 PF05258 APY29_18190 APY29_18195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APY29_18200 PF00091 Tubulin/FtsZ family, GTPase domain APY29_18200 PF12327 FtsZ family, C-terminal domain APY29_18205 PF02491 SHS2 domain inserted in FTSA APY29_18205 PF14450 Cell division protein FtsA APY29_18210 PF03799 Cell division protein FtsQ APY29_18210 PF08478 POTRA domain, FtsQ-type APY29_18215 PF01820 D-ala D-ala ligase N-terminus APY29_18215 PF07478 D-ala D-ala ligase C-terminus APY29_18220 PF01225 Mur ligase family, catalytic domain APY29_18220 PF02875 Mur ligase family, glutamate ligase domain APY29_18220 PF08245 Mur ligase middle domain APY29_18225 PF03033 Glycosyltransferase family 28 N-terminal domain APY29_18225 PF04101 Glycosyltransferase family 28 C-terminal domain APY29_18230 PF01098 APY29_18230 APY29_18235 PF00953 Glycosyl transferase family 4 APY29_18240 PF01225 Mur ligase family, catalytic domain APY29_18240 PF02875 Mur ligase family, glutamate ligase domain APY29_18240 PF08245 Mur ligase middle domain APY29_18245 PF01225 Mur ligase family, catalytic domain APY29_18245 PF02875 Mur ligase family, glutamate ligase domain APY29_18245 PF08245 Mur ligase middle domain APY29_18250 PF00905 Penicillin binding protein transpeptidase domain APY29_18250 PF03717 Penicillin-binding Protein dimerisation domain APY29_18255 PF04999 APY29_18255 APY29_18260 PF01795 MraW methylase family APY29_18265 PF02381 MraZ protein APY29_18270 PF05742 APY29_18270 APY29_18280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY29_18285 PF04348 LppC putative lipoprotein APY29_18290 PF02021 Uncharacterised protein family UPF0102 APY29_18295 PF04307 APY29_18295 APY29_18300 PF01565 FAD binding domain APY29_18300 PF02913 FAD linked oxidases, C-terminal domain APY29_18305 PF07007 Protein of unknown function (DUF1311) APY29_18310 PF00072 Response regulator receiver domain APY29_18310 PF00486 Transcriptional regulatory protein, C terminal APY29_18315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18320 PF00665 Integrase core domain APY29_18325 PF01527 Transposase APY29_18335 PF02669 APY29_18335 APY29_18340 PF00122 E1-E2 ATPase APY29_18340 PF00702 haloacid dehalogenase-like hydrolase APY29_18345 PF03814 APY29_18345 APY29_18350 PF09604 APY29_18350 APY29_18355 PF00646 F-box domain APY29_18365 PF00586 AIR synthase related protein, N-terminal domain APY29_18365 PF02769 AIR synthase related protein, C-terminal domain APY29_18370 PF01029 NusB family APY29_18375 PF00885 6,7-dimethyl-8-ribityllumazine synthase APY29_18380 PF00925 GTP cyclohydrolase II APY29_18380 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APY29_18395 PF00665 Integrase core domain APY29_18400 PF01527 Transposase APY29_18405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APY29_18405 PF01872 RibD C-terminal domain APY29_18410 PF00583 Acetyltransferase (GNAT) family APY29_18415 PF03477 ATP cone domain APY29_18420 PF00464 Serine hydroxymethyltransferase APY29_18425 PF11776 Domain of unknown function (DUF3315) APY29_18430 PF00005 ABC transporter APY29_18430 PF12848 ABC transporter APY29_18440 PF00892 EamA-like transporter family APY29_18445 PF02567 Phenazine biosynthesis-like protein APY29_18450 PF00155 Aminotransferase class I and II APY29_18450 PF00392 Bacterial regulatory proteins, gntR family APY29_18460 PF00756 Putative esterase APY29_18465 PF04828 Glutathione-dependent formaldehyde-activating enzyme APY29_18470 PF00107 Zinc-binding dehydrogenase APY29_18470 PF08240 Alcohol dehydrogenase GroES-like domain APY29_18475 PF02583 Metal-sensitive transcriptional repressor APY29_18485 PF00534 Glycosyl transferases group 1 APY29_18490 PF00072 Response regulator receiver domain APY29_18490 PF00486 Transcriptional regulatory protein, C terminal APY29_18495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18500 PF04107 Glutamate-cysteine ligase family 2(GCS2) APY29_18505 PF12833 Helix-turn-helix domain APY29_18515 PF01926 50S ribosome-binding GTPase APY29_18520 PF00034 Cytochrome c APY29_18525 PF13462 Thioredoxin APY29_18530 PF01323 DSBA-like thioredoxin domain APY29_18535 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_18540 PF02028 BCCT family transporter APY29_18545 PF00171 Aldehyde dehydrogenase family APY29_18550 PF00732 GMC oxidoreductase APY29_18550 PF05199 GMC oxidoreductase APY29_18555 PF01743 Poly A polymerase head domain APY29_18555 PF01966 HD domain APY29_18555 PF12627 Probable RNA and SrmB- binding site of polymerase A APY29_18560 PF00593 TonB dependent receptor APY29_18560 PF07715 TonB-dependent Receptor Plug Domain APY29_18565 PF01979 Amidohydrolase family APY29_18570 PF01380 SIS domain APY29_18575 PF00356 Bacterial regulatory proteins, lacI family APY29_18575 PF13377 Periplasmic binding protein-like domain APY29_18580 PF07690 Major Facilitator Superfamily APY29_18585 PF00392 Bacterial regulatory proteins, gntR family APY29_18585 PF07702 UTRA domain APY29_18600 PF00703 Glycosyl hydrolases family 2 APY29_18600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_18600 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_18600 PF16355 APY29_18600 APY29_18605 PF00593 TonB dependent receptor APY29_18605 PF07715 TonB-dependent Receptor Plug Domain APY29_18610 PF01203 APY29_18610 APY29_18615 PF04612 Type II secretion system (T2SS), protein M APY29_18620 PF05134 Type II secretion system (T2SS), protein L APY29_18625 PF03934 Type II secretion system (T2SS), protein K APY29_18630 PF07963 Prokaryotic N-terminal methylation motif APY29_18630 PF11612 Type II secretion system (T2SS), protein J APY29_18635 PF02501 Type II secretion system (T2SS), protein I APY29_18635 PF07963 Prokaryotic N-terminal methylation motif APY29_18640 PF07963 Prokaryotic N-terminal methylation motif APY29_18640 PF12019 Type II transport protein GspH APY29_18645 PF07963 Prokaryotic N-terminal methylation motif APY29_18645 PF08334 Type II secretion system (T2SS), protein G APY29_18650 PF00482 Type II secretion system (T2SS), protein F APY29_18655 PF00437 Type II/IV secretion system protein APY29_18660 PF00263 APY29_18660 APY29_18660 PF03958 Bacterial type II/III secretion system short domain APY29_18665 PF11356 Type IV pilus biogenesis APY29_18665 PF13180 PDZ domain APY29_18670 PF00593 TonB dependent receptor APY29_18670 PF07715 TonB-dependent Receptor Plug Domain APY29_18685 PF00593 TonB dependent receptor APY29_18685 PF07715 TonB-dependent Receptor Plug Domain APY29_18695 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase APY29_18700 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_18705 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APY29_18710 PF00072 Response regulator receiver domain APY29_18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18715 PF00072 Response regulator receiver domain APY29_18720 PF00512 His Kinase A (phospho-acceptor) domain APY29_18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_18720 PF05227 CHASE3 domain APY29_18720 PF13188 PAS domain APY29_18725 PF04972 BON domain APY29_18735 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APY29_18735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY29_18745 PF05433 APY29_18745 APY29_18750 PF10001 APY29_18750 APY29_18755 PF01555 DNA methylase APY29_18765 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APY29_18770 PF00293 NUDIX domain APY29_18770 PF01467 Cytidylyltransferase APY29_18775 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_18780 PF03466 LysR substrate binding domain APY29_18785 PF01925 APY29_18785 APY29_18790 PF00595 PDZ domain (Also known as DHR or GLGF) APY29_18790 PF03572 Peptidase family S41 APY29_18790 PF11818 APY29_18790 APY29_18795 PF04055 Radical SAM superfamily APY29_18795 PF16881 APY29_18795 APY29_18800 PF03099 Biotin/lipoate A/B protein ligase family APY29_18805 PF04359 Protein of unknown function (DUF493) APY29_18810 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) APY29_18815 PF00768 D-alanyl-D-alanine carboxypeptidase APY29_18815 PF07943 Penicillin-binding protein 5, C-terminal domain APY29_18825 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel APY29_18825 PF05036 Sporulation related domain APY29_18830 PF13406 Transglycosylase SLT domain APY29_18835 PF00295 Glycosyl hydrolases family 28 APY29_18840 PF01098 APY29_18840 APY29_18845 PF00905 Penicillin binding protein transpeptidase domain APY29_18845 PF03717 Penicillin-binding Protein dimerisation domain APY29_18850 PF04093 APY29_18850 APY29_18855 PF04085 rod shape-determining protein MreC APY29_18860 PF06723 MreB/Mbl protein APY29_18865 PF00294 pfkB family carbohydrate kinase APY29_18870 PF00158 Sigma-54 interaction domain APY29_18870 PF01590 GAF domain APY29_18870 PF02954 Bacterial regulatory protein, Fis family APY29_18875 PF00593 TonB dependent receptor APY29_18875 PF07715 TonB-dependent Receptor Plug Domain APY29_18880 PF00107 Zinc-binding dehydrogenase APY29_18880 PF08240 Alcohol dehydrogenase GroES-like domain APY29_18885 PF10282 Lactonase, 7-bladed beta-propeller APY29_18890 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APY29_18895 PF00497 Bacterial extracellular solute-binding proteins, family 3 APY29_18895 PF13857 Ankyrin repeats (many copies) APY29_18900 PF13360 PQQ-like domain APY29_18900 PF13570 PQQ-like domain APY29_18905 PF00702 haloacid dehalogenase-like hydrolase APY29_18920 PF01433 Peptidase family M1 APY29_18920 PF09127 Leukotriene A4 hydrolase, C-terminal APY29_18925 PF00990 GGDEF domain APY29_18930 PF01209 ubiE/COQ5 methyltransferase family APY29_18935 PF07690 Major Facilitator Superfamily APY29_18940 PF16576 APY29_18940 APY29_18945 PF13673 Acetyltransferase (GNAT) domain APY29_18950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APY29_18955 PF00004 ATPase family associated with various cellular activities (AAA) APY29_18955 PF07724 AAA domain (Cdc48 subfamily) APY29_18955 PF10431 C-terminal, D2-small domain, of ClpB protein APY29_18960 PF00227 Proteasome subunit APY29_18965 PF00589 Phage integrase family APY29_18965 PF02899 Phage integrase, N-terminal SAM-like domain APY29_18970 PF04340 Protein of unknown function, DUF484 APY29_18975 PF01678 Diaminopimelate epimerase APY29_18980 PF13627 APY29_18980 APY29_18985 PF04304 APY29_18985 APY29_18990 PF00326 Prolyl oligopeptidase family APY29_18990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APY29_18995 PF00155 Aminotransferase class I and II APY29_19005 PF00326 Prolyl oligopeptidase family APY29_19005 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APY29_19015 PF08212 Lipocalin-like domain APY29_19020 PF08279 HTH domain APY29_19020 PF13280 APY29_19020 APY29_19025 PF04338 Protein of unknown function, DUF481 APY29_19030 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APY29_19030 PF03900 Porphobilinogen deaminase, C-terminal domain APY29_19035 PF00072 Response regulator receiver domain APY29_19035 PF04397 LytTr DNA-binding domain APY29_19040 PF06580 APY29_19040 APY29_19045 PF02230 Phospholipase/Carboxylesterase APY29_19050 PF13632 Glycosyl transferase family group 2 APY29_19060 PF02225 PA domain APY29_19060 PF04389 Peptidase family M28 APY29_19065 PF00990 GGDEF domain APY29_19070 PF00916 APY29_19070 APY29_19070 PF01740 STAS domain APY29_19075 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_19075 PF00553 Cellulose binding domain APY29_19080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY29_19080 PF00672 HAMP domain APY29_19080 PF17200 APY29_19080 APY29_19085 PF00990 GGDEF domain APY29_19085 PF01590 GAF domain APY29_19085 PF08447 PAS fold APY29_19085 PF08448 PAS fold APY29_19090 PF00675 Insulinase (Peptidase family M16) APY29_19090 PF05193 Peptidase M16 inactive domain APY29_19095 PF01590 GAF domain APY29_19110 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APY29_19110 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APY29_19115 PF01904 Protein of unknown function DUF72 APY29_19120 PF01204 Trehalase APY29_19125 PF01987 Mitochondrial biogenesis AIM24 APY29_19130 PF01544 CorA-like Mg2+ transporter protein APY29_19140 PF00324 Amino acid permease APY29_19150 PF00497 Bacterial extracellular solute-binding proteins, family 3 APY29_19155 PF00892 EamA-like transporter family APY29_19160 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APY29_19175 PF00990 GGDEF domain APY29_19180 PF07759 APY29_19180 APY29_19190 PF00326 Prolyl oligopeptidase family APY29_19190 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY29_19195 PF12823 APY29_19195 APY29_19200 PF05708 Orthopoxvirus protein of unknown function (DUF830) APY29_19205 PF00756 Putative esterase APY29_19215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_19220 PF13409 Glutathione S-transferase, N-terminal domain APY29_19220 PF13410 Glutathione S-transferase, C-terminal domain APY29_19225 PF01145 SPFH domain / Band 7 family APY29_19230 PF00106 short chain dehydrogenase APY29_19230 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_19240 PF12833 Helix-turn-helix domain APY29_19240 PF12852 Cupin APY29_19245 PF00106 short chain dehydrogenase APY29_19250 PF00665 Integrase core domain APY29_19255 PF01527 Transposase APY29_19260 PF07505 APY29_19260 APY29_19280 PF12760 Transposase zinc-ribbon domain APY29_19280 PF12762 APY29_19280 APY29_19285 PF00456 Transketolase, thiamine diphosphate binding domain APY29_19290 PF07745 Glycosyl hydrolase family 53 APY29_19295 PF01764 Lipase (class 3) APY29_19305 PF00672 HAMP domain APY29_19305 PF02743 Cache domain APY29_19305 PF07228 Stage II sporulation protein E (SpoIIE) APY29_19310 PF13581 Histidine kinase-like ATPase domain APY29_19315 PF01740 STAS domain APY29_19320 PF13419 Haloacid dehalogenase-like hydrolase APY29_19325 PF00392 Bacterial regulatory proteins, gntR family APY29_19325 PF07729 FCD domain APY29_19330 PF03600 Citrate transporter APY29_19330 PF07158 APY29_19330 APY29_19335 PF00698 Acyl transferase domain APY29_19340 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase APY29_19345 PF10620 APY29_19345 APY29_19350 PF06833 Malonate decarboxylase gamma subunit (MdcE) APY29_19355 PF01039 Carboxyl transferase domain APY29_19360 PF06857 APY29_19360 APY29_19365 PF16957 APY29_19365 APY29_19370 PF03551 Transcriptional regulator PadR-like family APY29_19375 PF04954 Siderophore-interacting protein APY29_19375 PF08021 Siderophore-interacting FAD-binding domain APY29_19380 PF00328 Histidine phosphatase superfamily (branch 2) APY29_19390 PF04264 YceI-like domain APY29_19395 PF00881 Nitroreductase family APY29_19400 PF06258 APY29_19400 APY29_19405 PF09286 Pro-kumamolisin, activation domain APY29_19415 PF02592 APY29_19415 APY29_19420 PF03710 Glutamate-ammonia ligase adenylyltransferase APY29_19420 PF08335 GlnD PII-uridylyltransferase APY29_19430 PF08450 SMP-30/Gluconolaconase/LRE-like region APY29_19445 PF00793 DAHP synthetase I family APY29_19460 PF00118 TCP-1/cpn60 chaperonin family APY29_19465 PF00166 Chaperonin 10 Kd subunit APY29_19470 PF04231 Endonuclease I APY29_19470 PF13205 Bacterial Ig-like domain APY29_19475 PF00106 short chain dehydrogenase APY29_19485 PF01852 START domain APY29_19495 PF12625 APY29_19495 APY29_19495 PF12833 Helix-turn-helix domain APY29_19500 PF03091 CutA1 divalent ion tolerance protein APY29_19505 PF02683 APY29_19505 APY29_19505 PF11412 Disulphide bond corrector protein DsbC APY29_19505 PF13899 Thioredoxin-like APY29_19510 PF01220 Dehydroquinase class II APY29_19515 PF00364 Biotin-requiring enzyme APY29_19520 PF05635 23S rRNA-intervening sequence protein APY29_19525 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APY29_19525 PF02785 Biotin carboxylase C-terminal domain APY29_19525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_19540 PF00665 Integrase core domain APY29_19540 PF13276 APY29_19540 APY29_19545 PF01527 Transposase APY29_19550 PF06325 Ribosomal protein L11 methyltransferase (PrmA) APY29_19560 PF01381 Helix-turn-helix APY29_19570 PF11906 APY29_19570 APY29_19575 PF02954 Bacterial regulatory protein, Fis family APY29_19580 PF01148 Cytidylyltransferase family APY29_19585 PF01553 Acyltransferase APY29_19590 PF01066 CDP-alcohol phosphatidyltransferase APY29_19605 PF00782 Dual specificity phosphatase, catalytic domain APY29_19610 PF12146 Putative lysophospholipase APY29_19610 PF12147 APY29_19610 APY29_19615 PF01066 CDP-alcohol phosphatidyltransferase APY29_19620 PF01808 AICARFT/IMPCHase bienzyme APY29_19620 PF02142 MGS-like domain APY29_19630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APY29_19630 PF02843 Phosphoribosylglycinamide synthetase, C domain APY29_19630 PF02844 Phosphoribosylglycinamide synthetase, N domain APY29_19640 PF12805 APY29_19640 APY29_19640 PF13515 APY29_19640 APY29_19645 PF07690 Major Facilitator Superfamily APY29_19650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_19650 PF03466 LysR substrate binding domain APY29_19655 PF01553 Acyltransferase APY29_19655 PF07690 Major Facilitator Superfamily APY29_19665 PF10825 APY29_19665 APY29_19670 PF03186 APY29_19670 APY29_19675 PF00293 NUDIX domain APY29_19675 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APY29_19675 PF09297 NADH pyrophosphatase zinc ribbon domain APY29_19680 PF03583 Secretory lipase APY29_19690 PF01521 Iron-sulphur cluster biosynthesis APY29_19695 PF04519 APY29_19695 APY29_19705 PF13548 APY29_19705 APY29_19710 PF00072 Response regulator receiver domain APY29_19710 PF00563 EAL domain APY29_19710 PF00990 GGDEF domain APY29_19715 PF00072 Response regulator receiver domain APY29_19715 PF00512 His Kinase A (phospho-acceptor) domain APY29_19715 PF01627 Hpt domain APY29_19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_19720 PF00210 Ferritin-like domain APY29_19725 PF04324 BFD-like [2Fe-2S] binding domain APY29_19730 PF00293 NUDIX domain APY29_19745 PF00380 Ribosomal protein S9/S16 APY29_19750 PF00572 Ribosomal protein L13 APY29_19755 PF03232 APY29_19755 APY29_19760 PF00893 Small Multidrug Resistance protein APY29_19765 PF02675 S-adenosylmethionine decarboxylase APY29_19770 PF00027 Cyclic nucleotide-binding domain APY29_19770 PF00325 Bacterial regulatory proteins, crp family APY29_19775 PF12710 haloacid dehalogenase-like hydrolase APY29_19780 PF00218 Indole-3-glycerol phosphate synthase APY29_19785 PF00591 Glycosyl transferase family, a/b domain APY29_19785 PF02885 Glycosyl transferase family, helical bundle domain APY29_19790 PF01613 Flavin reductase like domain APY29_19795 PF00117 Glutamine amidotransferase class-I APY29_19805 PF00425 chorismate binding enzyme APY29_19805 PF04715 Anthranilate synthase component I, N terminal region APY29_19810 PF00781 Diacylglycerol kinase catalytic domain APY29_19815 PF00583 Acetyltransferase (GNAT) family APY29_19820 PF00834 Ribulose-phosphate 3 epimerase family APY29_19825 PF13505 Outer membrane protein beta-barrel domain APY29_19830 PF00226 DnaJ domain APY29_19835 PF01259 SAICAR synthetase APY29_19855 PF00182 Chitinase class I APY29_19855 PF01471 Putative peptidoglycan binding domain APY29_19855 PF01551 Peptidase family M23 APY29_19860 PF01447 Thermolysin metallopeptidase, catalytic domain APY29_19860 PF02868 Thermolysin metallopeptidase, alpha-helical domain APY29_19860 PF07504 Fungalysin/Thermolysin Propeptide Motif APY29_19865 PF06127 APY29_19865 APY29_19870 PF01370 NAD dependent epimerase/dehydratase family APY29_19875 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APY29_19875 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY29_19875 PF04039 APY29_19875 APY29_19875 PF13244 APY29_19875 APY29_19880 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APY29_19885 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APY29_19890 PF01899 APY29_19890 APY29_19895 PF04066 APY29_19895 APY29_19900 PF03334 APY29_19900 APY29_19915 PF04209 homogentisate 1,2-dioxygenase APY29_19920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_19920 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal APY29_19925 PF12802 MarR family APY29_19930 PF13899 Thioredoxin-like APY29_19935 PF00854 POT family APY29_19940 PF03301 Tryptophan 2,3-dioxygenase APY29_19945 PF00932 Lamin Tail Domain APY29_19945 PF03160 Calx-beta domain APY29_19945 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_19950 PF00676 Dehydrogenase E1 component APY29_19955 PF02779 Transketolase, pyrimidine binding domain APY29_19955 PF02780 Transketolase, C-terminal domain APY29_19960 PF07653 Variant SH3 domain APY29_19965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY29_19965 PF00364 Biotin-requiring enzyme APY29_19965 PF02817 e3 binding domain APY29_19970 PF00270 DEAD/DEAH box helicase APY29_19970 PF00271 Helicase conserved C-terminal domain APY29_19980 PF00106 short chain dehydrogenase APY29_19985 PF00873 AcrB/AcrD/AcrF family APY29_19995 PF00440 Bacterial regulatory proteins, tetR family APY29_20005 PF06903 APY29_20005 APY29_20015 PF00890 FAD binding domain APY29_20015 PF13454 FAD-NAD(P)-binding APY29_20020 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_20025 PF13460 NADH(P)-binding APY29_20030 PF00128 Alpha amylase, catalytic domain APY29_20030 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_20035 PF11154 APY29_20035 APY29_20040 PF00128 Alpha amylase, catalytic domain APY29_20045 PF02446 4-alpha-glucanotransferase APY29_20050 PF00128 Alpha amylase, catalytic domain APY29_20050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_20050 PF11941 Domain of unknown function (DUF3459) APY29_20055 PF00128 Alpha amylase, catalytic domain APY29_20055 PF02806 Alpha amylase, C-terminal all-beta domain APY29_20055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY29_20060 PF00534 Glycosyl transferases group 1 APY29_20060 PF08323 Starch synthase catalytic domain APY29_20065 PF00990 GGDEF domain APY29_20070 PF05661 APY29_20070 APY29_20075 PF03109 APY29_20075 APY29_20080 PF00884 Sulfatase APY29_20085 PF00924 Mechanosensitive ion channel APY29_20085 PF12607 APY29_20085 APY29_20090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APY29_20105 PF01464 Transglycosylase SLT domain APY29_20115 PF00263 APY29_20115 APY29_20115 PF03958 Bacterial type II/III secretion system short domain APY29_20120 PF01311 APY29_20120 APY29_20125 PF09486 APY29_20125 APY29_20130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY29_20130 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY29_20135 PF02108 APY29_20135 APY29_20140 PF09502 APY29_20140 APY29_20145 PF01514 Secretory protein of YscJ/FliF family APY29_20150 PF09487 APY29_20150 APY29_20155 PF09613 APY29_20155 APY29_20160 PF01312 FlhB HrpN YscU SpaS Family APY29_20165 PF00771 FHIPEP family APY29_20170 PF09483 APY29_20170 APY29_20175 PF01052 Surface presentation of antigens (SPOA) APY29_20180 PF00813 APY29_20180 APY29_20185 PF01313 APY29_20185 APY29_20210 PF05932 Tir chaperone protein (CesT) family APY29_20230 PF01040 UbiA prenyltransferase family APY29_20235 PF00156 Phosphoribosyl transferase domain APY29_20240 PF04055 Radical SAM superfamily APY29_20240 PF06968 Biotin and Thiamin Synthesis associated domain APY29_20245 PF00155 Aminotransferase class I and II APY29_20255 PF12697 Alpha/beta hydrolase family APY29_20260 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_20265 PF08241 Methyltransferase domain APY29_20270 PF05118 Aspartyl/Asparaginyl beta-hydroxylase APY29_20275 PF12680 SnoaL-like domain APY29_20280 PF02698 DUF218 domain APY29_20285 PF00291 Pyridoxal-phosphate dependent enzyme APY29_20295 PF01134 Glucose inhibited division protein A APY29_20295 PF13932 GidA associated domain 3 APY29_20300 PF10677 APY29_20300 APY29_20310 PF01163 RIO1 family APY29_20315 PF01614 Bacterial transcriptional regulator APY29_20315 PF09339 IclR helix-turn-helix domain APY29_20320 PF12146 Putative lysophospholipase APY29_20325 PF02627 Carboxymuconolactone decarboxylase family APY29_20330 PF00561 alpha/beta hydrolase fold APY29_20335 PF00206 Lyase APY29_20335 PF10397 Adenylosuccinate lyase C-terminus APY29_20340 PF00775 Dioxygenase APY29_20350 PF00108 Thiolase, N-terminal domain APY29_20350 PF02803 Thiolase, C-terminal domain APY29_20355 PF01144 Coenzyme A transferase APY29_20360 PF01144 Coenzyme A transferase APY29_20365 PF00355 Rieske [2Fe-2S] domain APY29_20370 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_20370 PF00175 Oxidoreductase NAD-binding domain APY29_20370 PF00970 Oxidoreductase FAD-binding domain APY29_20375 PF00455 APY29_20375 APY29_20375 PF08220 DeoR-like helix-turn-helix domain APY29_20380 PF01266 FAD dependent oxidoreductase APY29_20380 PF16901 APY29_20380 APY29_20385 PF00230 Major intrinsic protein APY29_20390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY29_20390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY29_20395 PF00665 Integrase core domain APY29_20395 PF13276 APY29_20395 APY29_20400 PF01527 Transposase APY29_20405 PF12680 SnoaL-like domain APY29_20410 PF01494 FAD binding domain APY29_20415 PF02311 AraC-like ligand binding domain APY29_20415 PF12833 Helix-turn-helix domain APY29_20420 PF00171 Aldehyde dehydrogenase family APY29_20425 PF00106 short chain dehydrogenase APY29_20425 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_20430 PF13557 APY29_20430 APY29_20435 PF12802 MarR family APY29_20440 PF11871 APY29_20440 APY29_20440 PF13487 HD domain APY29_20445 PF07690 Major Facilitator Superfamily APY29_20455 PF00132 Bacterial transferase hexapeptide (six repeats) APY29_20470 PF00150 Cellulase (glycosyl hydrolase family 5) APY29_20475 PF00920 Dehydratase family APY29_20480 PF00589 Phage integrase family APY29_20485 PF14085 APY29_20485 APY29_20490 PF00665 Integrase core domain APY29_20490 PF13276 APY29_20490 APY29_20495 PF01527 Transposase APY29_20505 PF00665 Integrase core domain APY29_20505 PF13276 APY29_20505 APY29_20510 PF01527 Transposase APY29_20515 PF08327 Activator of Hsp90 ATPase homolog 1-like protein APY29_20520 PF00665 Integrase core domain APY29_20525 PF01527 Transposase APY29_20540 PF01638 HxlR-like helix-turn-helix APY29_20545 PF05368 NmrA-like family APY29_20560 PF07396 Phosphate-selective porin O and P APY29_20565 PF03812 APY29_20565 APY29_20570 PF01717 Cobalamin-independent synthase, Catalytic domain APY29_20575 PF08908 APY29_20575 APY29_20580 PF03358 NADPH-dependent FMN reductase APY29_20585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_20585 PF03466 LysR substrate binding domain APY29_20590 PF02677 APY29_20590 APY29_20595 PF02219 Methylenetetrahydrofolate reductase APY29_20605 PF02321 Outer membrane efflux protein APY29_20615 PF16576 APY29_20615 APY29_20620 PF00512 His Kinase A (phospho-acceptor) domain APY29_20620 PF00672 HAMP domain APY29_20620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_20625 PF00072 Response regulator receiver domain APY29_20625 PF00486 Transcriptional regulatory protein, C terminal APY29_20630 PF00551 Formyl transferase APY29_20630 PF01842 ACT domain APY29_20640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY29_20640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APY29_20645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APY29_20650 PF02146 Sir2 family APY29_20655 PF12697 Alpha/beta hydrolase family APY29_20660 PF13411 MerR HTH family regulatory protein APY29_20665 PF07690 Major Facilitator Superfamily APY29_20675 PF01527 Transposase APY29_20680 PF13276 APY29_20680 APY29_20680 PF13683 APY29_20680 APY29_20695 PF01026 TatD related DNase APY29_20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_20700 PF03466 LysR substrate binding domain APY29_20705 PF00355 Rieske [2Fe-2S] domain APY29_20710 PF00111 2Fe-2S iron-sulfur cluster binding domain APY29_20710 PF00970 Oxidoreductase FAD-binding domain APY29_20715 PF00860 Permease family APY29_20720 PF00962 Adenosine/AMP deaminase APY29_20725 PF01156 Inosine-uridine preferring nucleoside hydrolase APY29_20730 PF01425 Amidase APY29_20735 PF01019 Gamma-glutamyltranspeptidase APY29_20745 PF07690 Major Facilitator Superfamily APY29_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_20750 PF03466 LysR substrate binding domain APY29_20755 PF01546 Peptidase family M20/M25/M40 APY29_20755 PF07687 Peptidase dimerisation domain APY29_20760 PF00266 Aminotransferase class-V APY29_20765 PF01522 Polysaccharide deacetylase APY29_20770 PF11533 Protein of unknown function (DUF3225) APY29_20775 PF09349 OHCU decarboxylase APY29_20780 PF13738 Pyridine nucleotide-disulphide oxidoreductase APY29_20785 PF00576 HIUase/Transthyretin family APY29_20790 PF07308 APY29_20790 APY29_20795 PF00271 Helicase conserved C-terminal domain APY29_20795 PF04408 Helicase associated domain (HA2) APY29_20795 PF08482 APY29_20795 APY29_20805 PF00593 TonB dependent receptor APY29_20805 PF07715 TonB-dependent Receptor Plug Domain APY29_20805 PF13620 Carboxypeptidase regulatory-like domain APY29_20810 PF00849 RNA pseudouridylate synthase APY29_20820 PF00248 Aldo/keto reductase family APY29_20825 PF00107 Zinc-binding dehydrogenase APY29_20825 PF16884 APY29_20825 APY29_20845 PF12697 Alpha/beta hydrolase family APY29_20855 PF02566 OsmC-like protein APY29_20860 PF01047 MarR family APY29_20865 PF03969 AFG1-like ATPase APY29_20870 PF12146 Putative lysophospholipase APY29_20895 PF03203 APY29_20895 APY29_20905 PF03372 Endonuclease/Exonuclease/phosphatase family APY29_20910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APY29_20920 PF12365 APY29_20920 APY29_20925 PF03929 APY29_20925 APY29_20930 PF11804 APY29_20930 APY29_20935 PF08808 APY29_20935 APY29_20945 PF00440 Bacterial regulatory proteins, tetR family APY29_20950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY29_20950 PF02770 Acyl-CoA dehydrogenase, middle domain APY29_20950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY29_20955 PF01039 Carboxyl transferase domain APY29_20960 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APY29_20960 PF00364 Biotin-requiring enzyme APY29_20960 PF02785 Biotin carboxylase C-terminal domain APY29_20960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_20965 PF00326 Prolyl oligopeptidase family APY29_20970 PF00881 Nitroreductase family APY29_20980 PF13174 Tetratricopeptide repeat APY29_20980 PF14559 Tetratricopeptide repeat APY29_20985 PF00027 Cyclic nucleotide-binding domain APY29_20985 PF00990 GGDEF domain APY29_20990 PF00463 Isocitrate lyase family APY29_20995 PF01274 Malate synthase APY29_21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_21000 PF03466 LysR substrate binding domain APY29_21005 PF00999 Sodium/hydrogen exchanger family APY29_21010 PF12833 Helix-turn-helix domain APY29_21015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY29_21020 PF00440 Bacterial regulatory proteins, tetR family APY29_21020 PF14246 AefR-like transcriptional repressor, C-terminal region APY29_21030 PF12706 Beta-lactamase superfamily domain APY29_21035 PF01432 Peptidase family M3 APY29_21040 PF01112 Asparaginase APY29_21045 PF01553 Acyltransferase APY29_21050 PF00472 RF-1 domain APY29_21055 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) APY29_21060 PF00849 RNA pseudouridylate synthase APY29_21065 PF07883 Cupin domain APY29_21070 PF03109 APY29_21070 APY29_21075 PF02036 SCP-2 sterol transfer family APY29_21080 PF01820 D-ala D-ala ligase N-terminus APY29_21080 PF07478 D-ala D-ala ligase C-terminus APY29_21090 PF07043 APY29_21090 APY29_21095 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family APY29_21100 PF00501 AMP-binding enzyme APY29_21105 PF03692 APY29_21105 APY29_21110 PF00561 alpha/beta hydrolase fold APY29_21120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY29_21120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY29_21125 PF13698 APY29_21125 APY29_21135 PF00588 SpoU rRNA Methylase family APY29_21140 PF07690 Major Facilitator Superfamily APY29_21160 PF00512 His Kinase A (phospho-acceptor) domain APY29_21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_21165 PF00205 Thiamine pyrophosphate enzyme, central domain APY29_21165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APY29_21165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APY29_21175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APY29_21175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APY29_21180 PF02556 Preprotein translocase subunit SecB APY29_21185 PF00581 Rhodanese-like domain APY29_21195 PF09500 Putative thioesterase (yiiD_Cterm) APY29_21200 PF01755 APY29_21200 APY29_21205 PF02602 Uroporphyrinogen-III synthase HemD APY29_21210 PF04375 APY29_21210 APY29_21215 PF07219 APY29_21215 APY29_21220 PF00108 Thiolase, N-terminal domain APY29_21220 PF02803 Thiolase, C-terminal domain APY29_21235 PF00080 Copper/zinc superoxide dismutase (SODC) APY29_21240 PF00080 Copper/zinc superoxide dismutase (SODC) APY29_21245 PF00072 Response regulator receiver domain APY29_21245 PF00158 Sigma-54 interaction domain APY29_21245 PF02954 Bacterial regulatory protein, Fis family APY29_21250 PF00512 His Kinase A (phospho-acceptor) domain APY29_21250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY29_21255 PF00909 Ammonium Transporter Family APY29_21260 PF00543 Nitrogen regulatory protein P-II APY29_21265 PF00120 Glutamine synthetase, catalytic domain APY29_21265 PF03951 Glutamine synthetase, beta-Grasp domain APY29_21270 PF02673 APY29_21270 APY29_21275 PF03724 META domain APY29_21275 PF14302 APY29_21275 APY29_21280 PF01161 Phosphatidylethanolamine-binding protein APY29_21285 PF13432 Tetratricopeptide repeat APY29_21295 PF12146 Putative lysophospholipase APY29_21300 PF01553 Acyltransferase APY29_21305 PF03061 Thioesterase superfamily APY29_21310 PF13091 PLD-like domain APY29_21315 PF04264 YceI-like domain APY29_21320 PF00300 Histidine phosphatase superfamily (branch 1) APY29_21325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_21335 PF03547 APY29_21335 APY29_21345 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APY29_21350 PF13560 Helix-turn-helix domain APY29_21360 PF11625 Protein of unknown function (DUF3253) APY29_21365 PF10017 APY29_21365 APY29_21370 PF03781 Sulfatase-modifying factor enzyme 1 APY29_21370 PF12867 DinB superfamily APY29_21375 PF00266 Aminotransferase class-V APY29_21380 PF00528 Binding-protein-dependent transport system inner membrane component APY29_21380 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APY29_21385 PF00005 ABC transporter APY29_21390 PF13202 EF hand APY29_21400 PF00005 ABC transporter APY29_21405 PF01987 Mitochondrial biogenesis AIM24 APY29_21410 PF01734 Patatin-like phospholipase APY29_21415 PF00593 TonB dependent receptor APY29_21415 PF07715 TonB-dependent Receptor Plug Domain APY29_21420 PF01037 AsnC family APY29_21420 PF13404 AsnC-type helix-turn-helix domain APY29_21425 PF00351 Biopterin-dependent aromatic amino acid hydroxylase APY29_21430 PF14300 Domain of unknown function (DUF4375) APY29_21435 PF05299 M61 glycyl aminopeptidase APY29_21440 PF07883 Cupin domain APY29_21440 PF13472 GDSL-like Lipase/Acylhydrolase family APY29_21445 PF02502 Ribose/Galactose Isomerase APY29_21445 PF12408 Ribose-5-phosphate isomerase APY29_21450 PF13561 Enoyl-(Acyl carrier protein) reductase APY29_21455 PF04962 KduI/IolB family APY29_21460 PF00356 Bacterial regulatory proteins, lacI family APY29_21460 PF13377 Periplasmic binding protein-like domain APY29_21465 PF04616 Glycosyl hydrolases family 43 APY29_21470 PF06808 APY29_21470 APY29_21475 PF04290 APY29_21475 APY29_21480 PF03480 Bacterial extracellular solute-binding protein, family 7 APY29_21490 PF07859 alpha/beta hydrolase fold APY29_21495 PF00135 Carboxylesterase family APY29_21500 PF00248 Aldo/keto reductase family APY29_21505 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_21510 PF04357 APY29_21510 APY29_21515 PF01103 Surface antigen APY29_21515 PF07244 Surface antigen variable number repeat APY29_21515 PF17243 APY29_21515 APY29_21520 PF00593 TonB dependent receptor APY29_21520 PF07715 TonB-dependent Receptor Plug Domain APY29_21525 PF13469 Sulfotransferase family APY29_21530 PF02092 APY29_21530 APY29_21530 PF05746 DALR anticodon binding domain APY29_21535 PF02091 Glycyl-tRNA synthetase alpha subunit APY29_21540 PF00437 Type II/IV secretion system protein APY29_21540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY29_21550 PF00117 Glutamine amidotransferase class-I APY29_21560 PF00902 Sec-independent protein translocase protein (TatC) APY29_21565 PF02416 mttA/Hcf106 family APY29_21570 PF02416 mttA/Hcf106 family APY29_21580 PF00762 Ferrochelatase APY29_21585 PF00561 alpha/beta hydrolase fold APY29_21595 PF01863 Protein of unknown function DUF45 APY29_21600 PF04381 Putative exonuclease, RdgC APY29_21605 PF01171 PP-loop family APY29_21615 PF00356 Bacterial regulatory proteins, lacI family APY29_21615 PF13377 Periplasmic binding protein-like domain APY29_21620 PF03648 Glycosyl hydrolase family 67 N-terminus APY29_21620 PF07477 Glycosyl hydrolase family 67 C-terminus APY29_21620 PF07488 Glycosyl hydrolase family 67 middle domain APY29_21625 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_21625 PF03629 Domain of unknown function (DUF303) APY29_21630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY29_21630 PF13378 Enolase C-terminal domain-like APY29_21635 PF04616 Glycosyl hydrolases family 43 APY29_21645 PF01232 Mannitol dehydrogenase Rossmann domain APY29_21645 PF08125 Mannitol dehydrogenase C-terminal domain APY29_21665 PF00440 Bacterial regulatory proteins, tetR family APY29_21685 PF00202 Aminotransferase class-III APY29_21690 PF00596 Class II Aldolase and Adducin N-terminal domain APY29_21695 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY29_21695 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY29_21700 PF09694 APY29_21700 APY29_21705 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) APY29_21710 PF08450 SMP-30/Gluconolaconase/LRE-like region APY29_21715 PF00331 Glycosyl hydrolase family 10 APY29_21720 PF00703 Glycosyl hydrolases family 2 APY29_21720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY29_21720 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY29_21720 PF16355 APY29_21720 APY29_21725 PF02614 Glucuronate isomerase APY29_21740 PF00331 Glycosyl hydrolase family 10 APY29_21745 PF07690 Major Facilitator Superfamily APY29_21750 PF00593 TonB dependent receptor APY29_21750 PF07715 TonB-dependent Receptor Plug Domain APY29_21755 PF13347 MFS/sugar transport protein APY29_21760 PF04616 Glycosyl hydrolases family 43 APY29_21765 PF08212 Lipocalin-like domain APY29_21770 PF06877 Regulator of ribonuclease activity B APY29_21785 PF01527 Transposase APY29_21790 PF13276 APY29_21790 APY29_21790 PF13683 APY29_21790 APY29_21795 PF00665 Integrase core domain APY29_21800 PF01527 Transposase APY29_21810 PF03235 APY29_21810 APY29_21820 PF04325 Protein of unknown function (DUF465) APY29_21825 PF00107 Zinc-binding dehydrogenase APY29_21825 PF08240 Alcohol dehydrogenase GroES-like domain APY29_21830 PF01553 Acyltransferase APY29_21840 PF00356 Bacterial regulatory proteins, lacI family APY29_21840 PF13377 Periplasmic binding protein-like domain APY29_21845 PF00593 TonB dependent receptor APY29_21845 PF13620 Carboxypeptidase regulatory-like domain APY29_21855 PF00593 TonB dependent receptor APY29_21860 PF04820 Tryptophan halogenase APY29_21865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APY29_21870 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) APY29_21875 PF04337 Protein of unknown function, DUF480 APY29_21880 PF14094 APY29_21880 APY29_21885 PF13302 Acetyltransferase (GNAT) domain APY29_21890 PF00580 UvrD/REP helicase N-terminal domain APY29_21890 PF13361 UvrD-like helicase C-terminal domain APY29_21895 PF00265 Thymidine kinase APY29_21900 PF00512 His Kinase A (phospho-acceptor) domain APY29_21900 PF01590 GAF domain APY29_21905 PF04349 Periplasmic glucan biosynthesis protein, MdoG APY29_21910 PF14315 APY29_21910 APY29_21915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APY29_21915 PF06827 Zinc finger found in FPG and IleRS APY29_21915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APY29_21945 PF03594 APY29_21945 APY29_21950 PF00360 Phytochrome region APY29_21950 PF01590 GAF domain APY29_21950 PF08446 PAS fold APY29_21950 PF08448 PAS fold APY29_21955 PF01126 Heme oxygenase APY29_21960 PF07690 Major Facilitator Superfamily APY29_21965 PF01263 Aldose 1-epimerase APY29_21965 PF01471 Putative peptidoglycan binding domain APY29_21965 PF13406 Transglycosylase SLT domain APY29_21980 PF01925 APY29_21980 APY29_21985 PF13555 P-loop containing region of AAA domain APY29_21985 PF13558 Putative exonuclease SbcCD, C subunit APY29_21990 PF13835 APY29_21990 APY29_21995 PF11855 APY29_21995 APY29_22000 PF01227 GTP cyclohydrolase I APY29_22005 PF12802 MarR family APY29_22010 PF07869 APY29_22010 APY29_22015 PF13437 HlyD family secretion protein APY29_22015 PF13533 Biotin-lipoyl like APY29_22020 PF02321 Outer membrane efflux protein APY29_22025 PF04632 APY29_22025 APY29_22030 PF00083 Sugar (and other) transporter APY29_22035 PF13091 PLD-like domain APY29_22050 PF05016 Plasmid stabilisation system protein APY29_22055 PF03869 Arc-like DNA binding domain APY29_22060 PF01527 Transposase APY29_22070 PF01850 PIN domain APY29_22075 PF00665 Integrase core domain APY29_22075 PF13276 APY29_22075 APY29_22080 PF01527 Transposase APY29_22085 PF00756 Putative esterase APY29_22090 PF09722 APY29_22090 APY29_22105 PF00849 RNA pseudouridylate synthase APY29_22115 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APY29_22115 PF00364 Biotin-requiring enzyme APY29_22115 PF02626 Allophanate hydrolase subunit 2 APY29_22115 PF02682 Allophanate hydrolase subunit 1 APY29_22115 PF02785 Biotin carboxylase C-terminal domain APY29_22115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY29_22120 PF01425 Amidase APY29_22140 PF01156 Inosine-uridine preferring nucleoside hydrolase APY29_22145 PF13245 Part of AAA domain APY29_22145 PF13538 UvrD-like helicase C-terminal domain APY29_22150 PF00580 UvrD/REP helicase N-terminal domain APY29_22150 PF12705 PD-(D/E)XK nuclease superfamily APY29_22150 PF13361 UvrD-like helicase C-terminal domain APY29_22155 PF04257 Exodeoxyribonuclease V, gamma subunit APY29_22170 PF00005 ABC transporter APY29_22175 PF02405 APY29_22175 APY29_22180 PF02470 APY29_22180 APY29_22185 PF05494 Toluene tolerance, Ttg2 APY29_22190 PF13466 STAS domain APY29_22195 PF04333 APY29_22195 APY29_22205 PF00255 Glutathione peroxidase APY29_22215 PF02646 APY29_22215 APY29_22220 PF08240 Alcohol dehydrogenase GroES-like domain APY29_22220 PF13602 Zinc-binding dehydrogenase APY29_22225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY29_22225 PF03466 LysR substrate binding domain APY29_22235 PF13410 Glutathione S-transferase, C-terminal domain APY29_22235 PF13417 Glutathione S-transferase, N-terminal domain APY29_22245 PF13520 Amino acid permease APY29_22250 PF07971 Glycosyl hydrolase family 92 APY29_22255 PF10947 APY29_22255 APY29_22260 PF00990 GGDEF domain APY29_22260 PF01590 GAF domain APY29_22260 PF08448 PAS fold APY29_22280 PF10672 S-adenosylmethionine-dependent methyltransferase APY29_22285 PF03741 APY29_22285 APY29_22290 PF01694 Rhomboid family APY29_22295 PF03009 Glycerophosphoryl diester phosphodiesterase family APY29_22300 PF00593 TonB dependent receptor APY29_22300 PF07715 TonB-dependent Receptor Plug Domain APY29_22305 PF01569 PAP2 superfamily APY29_22310 PF01926 50S ribosome-binding GTPase APY29_22310 PF10396 GTP-binding protein TrmE N-terminus APY29_22310 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE APY29_22315 PF00656 Caspase domain APY29_22315 PF01522 Polysaccharide deacetylase APY29_22315 PF13424 Tetratricopeptide repeat APY29_22325 PF02096 60Kd inner membrane protein APY29_22325 PF14849 YidC periplasmic domain APY29_22330 PF00825 Ribonuclease P APY29_22335 PF00468 Ribosomal protein L34 APY29_22345 PF01526 APY29_22345 APY29_22345 PF13700 APY29_22345 APY29_22355 PF00665 Integrase core domain APY29_22360 PF01527 Transposase APY29_22365 PF01609 Transposase DDE domain APY29_22365 PF05598 APY29_22365 APY29_22370 PF04796 APY29_22370 APY29_22375 PF06414 Zeta toxin APY29_22385 PF01850 PIN domain APY29_22390 PF04014 Antidote-toxin recognition MazE APY29_22395 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_22400 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_22405 PF01471 Putative peptidoglycan binding domain APY29_22405 PF13406 Transglycosylase SLT domain APY29_22415 PF01527 Transposase APY29_22425 PF00239 Resolvase, N terminal domain APY29_22430 PF16762 APY29_22430 APY29_22435 PF13470 APY29_22435 APY29_22440 PF01526 APY29_22440 APY29_22440 PF13700 APY29_22440 APY29_22445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_22460 PF03090 APY29_22460 APY29_22460 PF08708 Primase C terminal 1 (PriCT-1) APY29_22465 PF00665 Integrase core domain APY29_22470 PF01527 Transposase APY29_22475 PF01527 Transposase APY29_22480 PF00665 Integrase core domain APY29_22480 PF13276 APY29_22480 APY29_22485 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_22495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_22500 PF09274 ParG APY29_22515 PF00239 Resolvase, N terminal domain APY29_22520 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_22525 PF00665 Integrase core domain APY29_22530 PF01527 Transposase APY29_22545 PF01936 NYN domain APY29_22555 PF00665 Integrase core domain APY29_22555 PF13276 APY29_22555 APY29_22560 PF01527 Transposase APY29_22565 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_22580 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_22590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_22595 PF09274 ParG APY29_22625 PF05016 Plasmid stabilisation system protein APY29_22635 PF00665 Integrase core domain APY29_22640 PF01527 Transposase APY29_22645 PF01527 Transposase APY29_22650 PF00665 Integrase core domain APY29_22650 PF13276 APY29_22650 APY29_22655 PF03377 Xanthomonas avirulence protein, Avr/PthA APY29_22660 PF00665 Integrase core domain APY29_22660 PF13276 APY29_22660 APY29_22665 PF01527 Transposase APY29_22680 PF10412 Type IV secretion-system coupling protein DNA-binding domain APY29_22685 PF08751 TrwC relaxase APY29_22685 PF13538 UvrD-like helicase C-terminal domain APY29_22685 PF13604 AAA domain APY29_22700 PF00665 Integrase core domain APY29_22700 PF13276 APY29_22700 APY29_22705 PF01527 Transposase APY29_22710 PF09274 ParG APY29_22715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY29_22720 PF11740 APY29_22720 APY29_22725 PF01527 Transposase APY29_22730 PF00665 Integrase core domain APY29_22735 PF11740 APY29_22735