APY29_00005 SM00382 ATPases associated with a variety of cellular activities APY29_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain APY29_00010 SM00480 DNA polymerase III beta subunit APY29_00020 SM00387 Histidine kinase-like ATPases APY29_00020 SM00433 TopoisomeraseII APY29_00035 SM00028 Tetratricopeptide repeats APY29_00070 SM00155 Phospholipase D. Active site motifs. APY29_00185 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APY29_00185 SM00245 tail specific protease APY29_00230 SM00829 Enoylreductase APY29_00355 SM00382 ATPases associated with a variety of cellular activities APY29_00465 SM00487 DEAD-like helicases superfamily APY29_00465 SM00490 helicase superfamily c-terminal domain APY29_00485 SM00822 APY29_00485 APY29_00490 SM00822 APY29_00490 APY29_00535 SM00862 Transcriptional regulatory protein, C terminal APY29_00555 SM00421 helix_turn_helix, Lux Regulon APY29_00555 SM00448 cheY-homologous receiver domain APY29_00575 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen APY29_00770 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_00775 SM00642 Alpha-amylase domain APY29_00780 SM00642 Alpha-amylase domain APY29_00785 SM00642 Alpha-amylase domain APY29_00995 SM00564 beta-propeller repeat APY29_01025 SM00091 PAS domain APY29_01025 SM00387 Histidine kinase-like ATPases APY29_01025 SM00388 His Kinase A (phosphoacceptor) domain APY29_01025 SM00448 cheY-homologous receiver domain APY29_01040 SM00346 helix_turn_helix isocitrate lyase regulation APY29_01055 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APY29_01110 SM00421 helix_turn_helix, Lux Regulon APY29_01110 SM00448 cheY-homologous receiver domain APY29_01255 SM00155 Phospholipase D. Active site motifs. APY29_01280 SM01266 APY29_01280 APY29_01290 SM00342 helix_turn_helix, arabinose operon control protein APY29_01330 SM00382 ATPases associated with a variety of cellular activities APY29_01330 SM01086 C-terminal, D2-small domain, of ClpB protein APY29_01360 SM00915 Jacalin-like lectin domain APY29_01390 SM00220 Serine/Threonine protein kinases, catalytic domain APY29_01400 SM00028 Tetratricopeptide repeats APY29_01415 SM00240 Forkhead associated domain APY29_01440 SM00331 Sigma factor PP2C-like phosphatases APY29_01440 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain APY29_01460 SM00912 haemagglutination activity domain APY29_01475 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs APY29_01475 SM00474 3'-5' exonuclease APY29_01475 SM00475 5'-3' exonuclease APY29_01475 SM00482 DNA polymerase A domain APY29_01535 SM00563 Phosphate acyltransferases APY29_01580 SM00822 APY29_01580 APY29_01605 SM00825 Beta-ketoacyl synthase APY29_01615 SM00248 ankyrin repeats APY29_01640 SM01057 Eukaryotic-type carbonic anhydrase APY29_01645 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_01645 SM00924 MgtE intracellular N domain APY29_01650 SM00881 CoA binding domain APY29_01710 SM00382 ATPases associated with a variety of cellular activities APY29_01720 SM00342 helix_turn_helix, arabinose operon control protein APY29_01760 SM00530 Helix-turn-helix XRE-family like proteins APY29_01770 SM00382 ATPases associated with a variety of cellular activities APY29_01790 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. APY29_01855 SM01004 Delta-aminolevulinic acid dehydratase APY29_01870 SM00477 DNA/RNA non-specific endonuclease APY29_01870 SM00892 DNA/RNA non-specific endonuclease APY29_01900 SM00491 APY29_01900 APY29_01905 SM01060 APY29_01905 APY29_01910 SM00248 ankyrin repeats APY29_01930 SM00448 cheY-homologous receiver domain APY29_01930 SM00862 Transcriptional regulatory protein, C terminal APY29_01935 SM00387 Histidine kinase-like ATPases APY29_01935 SM00388 His Kinase A (phosphoacceptor) domain APY29_02020 SM00960 Roadblock/LC7 domain APY29_02050 SM00849 Metallo-beta-lactamase superfamily APY29_02090 SM00382 ATPases associated with a variety of cellular activities APY29_02105 SM00421 helix_turn_helix, Lux Regulon APY29_02105 SM00448 cheY-homologous receiver domain APY29_02120 SM01060 APY29_02120 APY29_02165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APY29_02185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_02185 SM00387 Histidine kinase-like ATPases APY29_02185 SM00388 His Kinase A (phosphoacceptor) domain APY29_02190 SM00448 cheY-homologous receiver domain APY29_02190 SM00862 Transcriptional regulatory protein, C terminal APY29_02240 SM00244 prohibitin homologues APY29_02270 SM00052 Putative diguanylate phosphodiesterase APY29_02285 SM00382 ATPases associated with a variety of cellular activities APY29_02295 SM00938 Nitrogen regulatory protein P-II APY29_02340 SM00823 Phosphopantetheine attachment site APY29_02340 SM00824 Thioesterase APY29_02370 SM00836 DALR anticodon binding domain APY29_02370 SM01016 Arginyl tRNA synthetase N terminal dom APY29_02400 SM01259 APY29_02400 APY29_02420 SM00470 ParB-like nuclease domain APY29_02465 SM00363 S4 RNA-binding domain APY29_02565 SM00400 zinc finger APY29_02565 SM00493 APY29_02565 APY29_02565 SM00766 DNA primase DnaG DnaB-binding APY29_02590 SM00905 Dihydroneopterin aldolase APY29_02595 SM01217 APY29_02595 APY29_02630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APY29_02640 SM00644 APY29_02640 APY29_02685 SM01150 APY29_02685 APY29_02715 SM00257 Lysin motif APY29_02750 SM00357 Cold shock protein domain APY29_02750 SM00382 ATPases associated with a variety of cellular activities APY29_02750 SM00959 Rho termination factor, N-terminal domain APY29_02760 SM00487 DEAD-like helicases superfamily APY29_02760 SM00490 helicase superfamily c-terminal domain APY29_02765 SM00382 ATPases associated with a variety of cellular activities APY29_02775 SM00448 cheY-homologous receiver domain APY29_02780 SM00986 Uracil DNA glycosylase superfamily APY29_02780 SM00987 UreE urease accessory protein, C-terminal domain APY29_02815 SM00487 DEAD-like helicases superfamily APY29_02815 SM00490 helicase superfamily c-terminal domain APY29_02870 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain APY29_02870 SM00437 Bacterial DNA topoisomerase I DNA-binding domain APY29_02870 SM00493 APY29_02870 APY29_02895 SM00257 Lysin motif APY29_03020 SM00487 DEAD-like helicases superfamily APY29_03020 SM00490 helicase superfamily c-terminal domain APY29_03115 SM00631 APY29_03115 APY29_03120 SM00382 ATPases associated with a variety of cellular activities APY29_03195 SM00382 ATPases associated with a variety of cellular activities APY29_03250 SM00382 ATPases associated with a variety of cellular activities APY29_03250 SM00448 cheY-homologous receiver domain APY29_03260 SM00448 cheY-homologous receiver domain APY29_03315 SM00387 Histidine kinase-like ATPases APY29_03320 SM00448 cheY-homologous receiver domain APY29_03320 SM00850 LytTr DNA-binding domain APY29_03385 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_03390 SM00986 Uracil DNA glycosylase superfamily APY29_03390 SM00987 UreE urease accessory protein, C-terminal domain APY29_03395 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. APY29_03405 SM00382 ATPases associated with a variety of cellular activities APY29_03460 SM00344 helix_turn_helix ASNC type APY29_03470 SM01005 Alanine racemase, C-terminal domain APY29_03490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_03490 SM00091 PAS domain APY29_03490 SM00387 Histidine kinase-like ATPases APY29_03490 SM00388 His Kinase A (phosphoacceptor) domain APY29_03490 SM00448 cheY-homologous receiver domain APY29_03545 SM00387 Histidine kinase-like ATPases APY29_03545 SM00388 His Kinase A (phosphoacceptor) domain APY29_03545 SM00448 cheY-homologous receiver domain APY29_03565 SM00382 ATPases associated with a variety of cellular activities APY29_03565 SM00930 APY29_03565 APY29_03610 SM00986 Uracil DNA glycosylase superfamily APY29_03610 SM00987 UreE urease accessory protein, C-terminal domain APY29_03680 SM00382 ATPases associated with a variety of cellular activities APY29_03690 SM00830 Chorismate mutase type II APY29_03705 SM00387 Histidine kinase-like ATPases APY29_03710 SM00382 ATPases associated with a variety of cellular activities APY29_03710 SM00448 cheY-homologous receiver domain APY29_03730 SM00382 ATPases associated with a variety of cellular activities APY29_03810 SM00825 Beta-ketoacyl synthase APY29_03845 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_03875 SM00487 DEAD-like helicases superfamily APY29_03875 SM00490 helicase superfamily c-terminal domain APY29_03910 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_03935 SM00382 ATPases associated with a variety of cellular activities APY29_04015 SM00893 Electron transfer flavoprotein domain APY29_04020 SM00893 Electron transfer flavoprotein domain APY29_04045 SM00984 UDP binding domain APY29_04060 SM00882 Coenzyme A transferase APY29_04065 SM00882 Coenzyme A transferase APY29_04090 SM00382 ATPases associated with a variety of cellular activities APY29_04105 SM00528 Domain in histone-like proteins of HNS family APY29_04135 SM00656 APY29_04135 APY29_04200 SM01211 APY29_04200 APY29_04225 SM00382 ATPases associated with a variety of cellular activities APY29_04295 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_04295 SM00866 APY29_04295 APY29_04375 SM00028 Tetratricopeptide repeats APY29_04445 SM00450 Rhodanese Homology Domain APY29_04475 SM00382 ATPases associated with a variety of cellular activities APY29_04540 SM01154 APY29_04540 APY29_04550 SM00642 Alpha-amylase domain APY29_04565 SM00354 helix_turn _helix lactose operon repressor APY29_04570 SM00822 APY29_04570 APY29_04585 SM00448 cheY-homologous receiver domain APY29_04585 SM00862 Transcriptional regulatory protein, C terminal APY29_04590 SM00387 Histidine kinase-like ATPases APY29_04590 SM00388 His Kinase A (phosphoacceptor) domain APY29_04600 SM00421 helix_turn_helix, Lux Regulon APY29_04600 SM00448 cheY-homologous receiver domain APY29_04640 SM00387 Histidine kinase-like ATPases APY29_04640 SM00388 His Kinase A (phosphoacceptor) domain APY29_04640 SM00448 cheY-homologous receiver domain APY29_04660 SM00919 Malic enzyme, NAD binding domain APY29_04660 SM01274 APY29_04660 APY29_04710 SM00267 diguanylate cyclase APY29_04730 SM01329 APY29_04730 APY29_04735 SM00917 LeuA allosteric (dimerisation) domain APY29_04765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_04780 SM00862 Transcriptional regulatory protein, C terminal APY29_04785 SM00342 helix_turn_helix, arabinose operon control protein APY29_04845 SM00464 Found in ATP-dependent protease La (LON) APY29_04980 SM01011 Aminopeptidase P, N-terminal domain APY29_05005 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_05030 SM00072 Guanylate kinase homologues. APY29_05035 SM01409 APY29_05035 APY29_05040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_05040 SM00954 Region found in RelA / SpoT proteins APY29_05050 SM00487 DEAD-like helicases superfamily APY29_05050 SM00490 helicase superfamily c-terminal domain APY29_05105 SM00382 ATPases associated with a variety of cellular activities APY29_05120 SM00327 von Willebrand factor (vWF) type A domain APY29_05125 SM00028 Tetratricopeptide repeats APY29_05125 SM00327 von Willebrand factor (vWF) type A domain APY29_05140 SM00861 Transketolase, pyrimidine binding domain APY29_05215 SM00382 ATPases associated with a variety of cellular activities APY29_05230 SM00849 Metallo-beta-lactamase superfamily APY29_05255 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APY29_05295 SM00506 Appr-1"-p processing enzyme APY29_05330 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_05330 SM00387 Histidine kinase-like ATPases APY29_05420 SM00967 RNA 2'-O ribose methyltransferase substrate binding APY29_05450 SM00354 helix_turn _helix lactose operon repressor APY29_05505 SM00869 Autotransporter beta-domain APY29_05555 SM00318 Staphylococcal nuclease homologues APY29_05565 SM00528 Domain in histone-like proteins of HNS family APY29_05570 SM00642 Alpha-amylase domain APY29_05585 SM00448 cheY-homologous receiver domain APY29_05585 SM00862 Transcriptional regulatory protein, C terminal APY29_05590 SM00387 Histidine kinase-like ATPases APY29_05590 SM00388 His Kinase A (phosphoacceptor) domain APY29_05655 SM00382 ATPases associated with a variety of cellular activities APY29_05655 SM00448 cheY-homologous receiver domain APY29_05665 SM00387 Histidine kinase-like ATPases APY29_05665 SM00388 His Kinase A (phosphoacceptor) domain APY29_05675 SM00881 CoA binding domain APY29_05725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_05730 SM00564 beta-propeller repeat APY29_05805 SM00062 Bacterial periplasmic substrate-binding proteins APY29_05815 SM00382 ATPases associated with a variety of cellular activities APY29_05820 SM00382 ATPases associated with a variety of cellular activities APY29_05820 SM01086 C-terminal, D2-small domain, of ClpB protein APY29_05870 SM00855 Phosphoglycerate mutase family APY29_06005 SM00834 Putative regulatory protein APY29_06040 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APY29_06055 SM00382 ATPases associated with a variety of cellular activities APY29_06110 SM00091 PAS domain APY29_06110 SM00911 HWE histidine kinase APY29_06115 SM00448 cheY-homologous receiver domain APY29_06130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_06130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_06155 SM00448 cheY-homologous receiver domain APY29_06165 SM00341 Helicase and RNase D C-terminal APY29_06165 SM00487 DEAD-like helicases superfamily APY29_06165 SM00490 helicase superfamily c-terminal domain APY29_06165 SM00956 APY29_06165 APY29_06175 SM00382 ATPases associated with a variety of cellular activities APY29_06175 SM00487 DEAD-like helicases superfamily APY29_06175 SM00490 helicase superfamily c-terminal domain APY29_06175 SM00847 Helicase associated domain (HA2) Add an annotation APY29_06220 SM00954 Region found in RelA / SpoT proteins APY29_06245 SM00491 APY29_06245 APY29_06270 SM00448 cheY-homologous receiver domain APY29_06275 SM00448 cheY-homologous receiver domain APY29_06280 SM00260 Two component signalling adaptor domain APY29_06285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_06300 SM00260 Two component signalling adaptor domain APY29_06325 SM00369 Leucine-rich repeats, typical (most populated) subfamily APY29_06360 SM01149 APY29_06360 APY29_06405 SM00758 APY29_06405 APY29_06405 SM01217 APY29_06405 APY29_06420 SM00636 APY29_06420 APY29_06425 SM00812 Alpha-L-fucosidase APY29_06595 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_06650 SM00867 YceI-like domain APY29_06660 SM00867 YceI-like domain APY29_06665 SM00387 Histidine kinase-like ATPases APY29_06665 SM00388 His Kinase A (phosphoacceptor) domain APY29_06665 SM00448 cheY-homologous receiver domain APY29_06675 SM00387 Histidine kinase-like ATPases APY29_06675 SM00388 His Kinase A (phosphoacceptor) domain APY29_06675 SM00448 cheY-homologous receiver domain APY29_06680 SM00387 Histidine kinase-like ATPases APY29_06680 SM00388 His Kinase A (phosphoacceptor) domain APY29_06680 SM00448 cheY-homologous receiver domain APY29_06775 SM00422 helix_turn_helix, mercury resistance APY29_06800 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. APY29_06810 SM00849 Metallo-beta-lactamase superfamily APY29_06840 SM00421 helix_turn_helix, Lux Regulon APY29_06900 SM00924 MgtE intracellular N domain APY29_06945 SM00382 ATPases associated with a variety of cellular activities APY29_06965 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_07060 SM00054 EF-hand, calcium binding motif APY29_07090 SM00671 Sel1-like repeats. APY29_07095 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. APY29_07125 SM00382 ATPases associated with a variety of cellular activities APY29_07140 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain APY29_07170 SM00411 bacterial (prokaryotic) histone like domain APY29_07185 SM00382 ATPases associated with a variety of cellular activities APY29_07220 SM00732 Likely ribonuclease with RNase H fold. APY29_07290 SM00829 Enoylreductase APY29_07300 SM01092 CO dehydrogenase flavoprotein C-terminal domain APY29_07305 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY29_07345 SM00248 ankyrin repeats APY29_07395 SM00855 Phosphoglycerate mutase family APY29_07410 SM00155 Phospholipase D. Active site motifs. APY29_07415 SM00448 cheY-homologous receiver domain APY29_07420 SM00138 Methyltransferase, chemotaxis proteins APY29_07425 SM00052 Putative diguanylate phosphodiesterase APY29_07425 SM00448 cheY-homologous receiver domain APY29_07430 SM00260 Two component signalling adaptor domain APY29_07435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_07435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_07440 SM00073 Histidine Phosphotransfer domain APY29_07440 SM00260 Two component signalling adaptor domain APY29_07440 SM00387 Histidine kinase-like ATPases APY29_07440 SM01231 APY29_07440 APY29_07470 SM00487 DEAD-like helicases superfamily APY29_07470 SM00490 helicase superfamily c-terminal domain APY29_07470 SM00982 APY29_07470 APY29_07470 SM01058 CarD-like/TRCF domain APY29_07485 SM00448 cheY-homologous receiver domain APY29_07485 SM00862 Transcriptional regulatory protein, C terminal APY29_07490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_07490 SM00387 Histidine kinase-like ATPases APY29_07490 SM00388 His Kinase A (phosphoacceptor) domain APY29_07500 SM00645 Papain family cysteine protease APY29_07580 SM00342 helix_turn_helix, arabinose operon control protein APY29_07645 SM00829 Enoylreductase APY29_07710 SM00487 DEAD-like helicases superfamily APY29_07710 SM00490 helicase superfamily c-terminal domain APY29_07715 SM00052 Putative diguanylate phosphodiesterase APY29_07715 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_07715 SM00091 PAS domain APY29_07715 SM00267 diguanylate cyclase APY29_07720 SM00363 S4 RNA-binding domain APY29_07725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_07725 SM00267 diguanylate cyclase APY29_07765 SM00448 cheY-homologous receiver domain APY29_07765 SM00862 Transcriptional regulatory protein, C terminal APY29_07795 SM00382 ATPases associated with a variety of cellular activities APY29_07860 SM01126 APY29_07860 APY29_07945 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_07980 SM01351 APY29_07980 APY29_08005 SM00977 TilS substrate C-terminal domain APY29_08015 SM00098 Alkaline phosphatase homologues APY29_08070 SM01160 APY29_08070 APY29_08160 SM00382 ATPases associated with a variety of cellular activities APY29_08165 SM00530 Helix-turn-helix XRE-family like proteins APY29_08170 SM00966 SpoVT / AbrB like domain APY29_08175 SM00530 Helix-turn-helix XRE-family like proteins APY29_08180 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_08210 SM00257 Lysin motif APY29_08250 SM00859 Semialdehyde dehydrogenase, NAD binding domain APY29_08325 SM00052 Putative diguanylate phosphodiesterase APY29_08325 SM00267 diguanylate cyclase APY29_08325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_08340 SM00822 APY29_08340 APY29_08385 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APY29_08390 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APY29_08440 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_08440 SM00322 K homology RNA-binding domain APY29_08460 SM01387 APY29_08460 APY29_08465 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_08465 SM00322 K homology RNA-binding domain APY29_08485 SM01001 AIR carboxylase APY29_08505 SM00822 APY29_08505 APY29_08560 SM00487 DEAD-like helicases superfamily APY29_08560 SM00490 helicase superfamily c-terminal domain APY29_08620 SM00382 ATPases associated with a variety of cellular activities APY29_08690 SM00642 Alpha-amylase domain APY29_08695 SM00354 helix_turn _helix lactose operon repressor APY29_08700 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APY29_08725 SM00873 B3/4 domain APY29_08725 SM00874 tRNA synthetase B5 domain APY29_08725 SM00896 Ferredoxin-fold anticodon binding domain APY29_08730 SM00411 bacterial (prokaryotic) histone like domain APY29_08735 SM00422 helix_turn_helix, mercury resistance APY29_08820 SM00849 Metallo-beta-lactamase superfamily APY29_08845 SM00861 Transketolase, pyrimidine binding domain APY29_08850 SM00507 HNH nucleases APY29_08880 SM00465 GIY-YIG type nucleases (URI domain) APY29_08895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_08895 SM00091 PAS domain APY29_08895 SM00387 Histidine kinase-like ATPases APY29_08895 SM00388 His Kinase A (phosphoacceptor) domain APY29_08895 SM00448 cheY-homologous receiver domain APY29_08905 SM00478 endonuclease III APY29_08910 SM00382 ATPases associated with a variety of cellular activities APY29_08910 SM00962 SRP54-type protein, GTPase domain APY29_08910 SM00963 SRP54-type protein, helical bundle domain APY29_08915 SM00342 helix_turn_helix, arabinose operon control protein APY29_08940 SM01130 APY29_08940 APY29_08990 SM00944 Pro-kumamolisin, activation domain APY29_09055 SM00387 Histidine kinase-like ATPases APY29_09140 SM00344 helix_turn_helix ASNC type APY29_09155 SM01323 APY29_09155 APY29_09235 SM00354 helix_turn _helix lactose operon repressor APY29_09265 SM00448 cheY-homologous receiver domain APY29_09265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_09270 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_09270 SM00091 PAS domain APY29_09270 SM00387 Histidine kinase-like ATPases APY29_09270 SM00388 His Kinase A (phosphoacceptor) domain APY29_09270 SM00448 cheY-homologous receiver domain APY29_09270 SM01079 APY29_09270 APY29_09325 SM00267 diguanylate cyclase APY29_09325 SM00448 cheY-homologous receiver domain APY29_09335 SM01230 APY29_09335 APY29_09345 SM01230 APY29_09345 APY29_09375 SM00382 ATPases associated with a variety of cellular activities APY29_09410 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_09410 SM01091 Transporter associated domain APY29_09435 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_09490 SM00487 DEAD-like helicases superfamily APY29_09490 SM00490 helicase superfamily c-terminal domain APY29_09500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_09500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_09505 SM00260 Two component signalling adaptor domain APY29_09510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_09510 SM00267 diguanylate cyclase APY29_09560 SM00528 Domain in histone-like proteins of HNS family APY29_09575 SM00474 3'-5' exonuclease APY29_09610 SM00646 APY29_09610 APY29_09615 SM00853 MutL C terminal dimerisation domain APY29_09615 SM01340 APY29_09615 APY29_09635 SM00822 APY29_09635 APY29_09650 SM00052 Putative diguanylate phosphodiesterase APY29_09650 SM00267 diguanylate cyclase APY29_09660 SM01322 APY29_09660 APY29_09665 SM00357 Cold shock protein domain APY29_09690 SM00487 DEAD-like helicases superfamily APY29_09690 SM00490 helicase superfamily c-terminal domain APY29_09695 SM00382 ATPases associated with a variety of cellular activities APY29_09730 SM00052 Putative diguanylate phosphodiesterase APY29_09730 SM00267 diguanylate cyclase APY29_09730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_09740 SM00841 Elongation factor P, C-terminal APY29_09740 SM01185 APY29_09740 APY29_09805 SM00849 Metallo-beta-lactamase superfamily APY29_09845 SM01234 APY29_09845 APY29_09870 SM00840 APY29_09870 APY29_09910 SM00859 Semialdehyde dehydrogenase, NAD binding domain APY29_09935 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APY29_09960 SM00382 ATPases associated with a variety of cellular activities APY29_09965 SM00382 ATPases associated with a variety of cellular activities APY29_09970 SM00357 Cold shock protein domain APY29_10020 SM00382 ATPases associated with a variety of cellular activities APY29_10045 SM00363 S4 RNA-binding domain APY29_10070 SM00354 helix_turn _helix lactose operon repressor APY29_10145 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_10150 SM00411 bacterial (prokaryotic) histone like domain APY29_10160 SM00028 Tetratricopeptide repeats APY29_10170 SM00822 APY29_10170 APY29_10195 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_10195 SM01240 APY29_10195 APY29_10245 SM00829 Enoylreductase APY29_10305 SM00382 ATPases associated with a variety of cellular activities APY29_10365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_10370 SM00421 helix_turn_helix, Lux Regulon APY29_10370 SM00448 cheY-homologous receiver domain APY29_10380 SM00342 helix_turn_helix, arabinose operon control protein APY29_10395 SM00479 APY29_10395 APY29_10405 SM00529 Helix-turn-helix diphteria tox regulatory element APY29_10505 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_10505 SM00732 Likely ribonuclease with RNase H fold. APY29_10510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_10510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_10510 SM00091 PAS domain APY29_10510 SM00387 Histidine kinase-like ATPases APY29_10510 SM00388 His Kinase A (phosphoacceptor) domain APY29_10510 SM00448 cheY-homologous receiver domain APY29_10515 SM00448 cheY-homologous receiver domain APY29_10615 SM00382 ATPases associated with a variety of cellular activities APY29_10665 SM00382 ATPases associated with a variety of cellular activities APY29_10675 SM00849 Metallo-beta-lactamase superfamily APY29_10690 SM00382 ATPases associated with a variety of cellular activities APY29_10705 SM00226 Low molecular weight phosphatase family APY29_10715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APY29_10715 SM00465 GIY-YIG type nucleases (URI domain) APY29_10850 SM00953 APY29_10850 APY29_10890 SM01126 APY29_10890 APY29_10990 SM00487 DEAD-like helicases superfamily APY29_11095 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain APY29_11095 SM00437 Bacterial DNA topoisomerase I DNA-binding domain APY29_11095 SM00493 APY29_11095 APY29_11160 SM00487 DEAD-like helicases superfamily APY29_11160 SM00490 helicase superfamily c-terminal domain APY29_11175 SM00382 ATPases associated with a variety of cellular activities APY29_11185 SM00490 helicase superfamily c-terminal domain APY29_11195 SM00155 Phospholipase D. Active site motifs. APY29_11250 SM00984 UDP binding domain APY29_11270 SM00450 Rhodanese Homology Domain APY29_11275 SM00421 helix_turn_helix, Lux Regulon APY29_11275 SM00448 cheY-homologous receiver domain APY29_11280 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_11285 SM00363 S4 RNA-binding domain APY29_11455 SM00448 cheY-homologous receiver domain APY29_11455 SM00850 LytTr DNA-binding domain APY29_11475 SM00869 Autotransporter beta-domain APY29_11505 SM00387 Histidine kinase-like ATPases APY29_11505 SM00388 His Kinase A (phosphoacceptor) domain APY29_11510 SM00421 helix_turn_helix, Lux Regulon APY29_11510 SM00448 cheY-homologous receiver domain APY29_11515 SM00869 Autotransporter beta-domain APY29_11520 SM00052 Putative diguanylate phosphodiesterase APY29_11570 SM00852 Probable molybdopterin binding domain APY29_11650 SM00382 ATPases associated with a variety of cellular activities APY29_11740 SM00857 Resolvase, N terminal domain APY29_11870 SM00450 Rhodanese Homology Domain APY29_11875 SM00852 Probable molybdopterin binding domain APY29_11880 SM00382 ATPases associated with a variety of cellular activities APY29_11885 SM00564 beta-propeller repeat APY29_11900 SM00028 Tetratricopeptide repeats APY29_11910 SM00562 APY29_11910 APY29_11935 SM00382 ATPases associated with a variety of cellular activities APY29_11955 SM00382 ATPases associated with a variety of cellular activities APY29_11955 SM00843 APY29_11955 APY29_11975 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_11980 SM00382 ATPases associated with a variety of cellular activities APY29_11980 SM01086 C-terminal, D2-small domain, of ClpB protein APY29_12005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12015 SM00052 Putative diguanylate phosphodiesterase APY29_12015 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_12015 SM00091 PAS domain APY29_12015 SM00267 diguanylate cyclase APY29_12020 SM00091 PAS domain APY29_12020 SM00387 Histidine kinase-like ATPases APY29_12025 SM00052 Putative diguanylate phosphodiesterase APY29_12025 SM00267 diguanylate cyclase APY29_12025 SM00448 cheY-homologous receiver domain APY29_12030 SM00387 Histidine kinase-like ATPases APY29_12045 SM00858 APY29_12045 APY29_12050 SM00260 Two component signalling adaptor domain APY29_12050 SM00448 cheY-homologous receiver domain APY29_12095 SM00047 Lysozyme subfamily 2 APY29_12135 SM00421 helix_turn_helix, Lux Regulon APY29_12135 SM00448 cheY-homologous receiver domain APY29_12145 SM00448 cheY-homologous receiver domain APY29_12150 SM00382 ATPases associated with a variety of cellular activities APY29_12175 SM00822 APY29_12175 APY29_12245 SM00382 ATPases associated with a variety of cellular activities APY29_12295 SM00267 diguanylate cyclase APY29_12305 SM00267 diguanylate cyclase APY29_12310 SM00052 Putative diguanylate phosphodiesterase APY29_12310 SM00267 diguanylate cyclase APY29_12325 SM00382 ATPases associated with a variety of cellular activities APY29_12325 SM00962 SRP54-type protein, GTPase domain APY29_12340 SM00448 cheY-homologous receiver domain APY29_12350 SM00073 Histidine Phosphotransfer domain APY29_12350 SM00260 Two component signalling adaptor domain APY29_12350 SM00387 Histidine kinase-like ATPases APY29_12350 SM01231 APY29_12350 APY29_12440 SM00260 Two component signalling adaptor domain APY29_12450 SM00448 cheY-homologous receiver domain APY29_12455 SM00073 Histidine Phosphotransfer domain APY29_12455 SM00260 Two component signalling adaptor domain APY29_12455 SM00387 Histidine kinase-like ATPases APY29_12455 SM01231 APY29_12455 APY29_12460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12470 SM01049 APY29_12470 APY29_12475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12535 SM00260 Two component signalling adaptor domain APY29_12545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_12545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_12550 SM00138 Methyltransferase, chemotaxis proteins APY29_12560 SM00448 cheY-homologous receiver domain APY29_12565 SM00052 Putative diguanylate phosphodiesterase APY29_12565 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_12565 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_12565 SM00091 PAS domain APY29_12565 SM00267 diguanylate cyclase APY29_12585 SM00966 SpoVT / AbrB like domain APY29_12610 SM00073 Histidine Phosphotransfer domain APY29_12610 SM00387 Histidine kinase-like ATPases APY29_12610 SM00388 His Kinase A (phosphoacceptor) domain APY29_12610 SM00448 cheY-homologous receiver domain APY29_12615 SM00448 cheY-homologous receiver domain APY29_12615 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_12625 SM00937 APY29_12625 APY29_12630 SM00850 LytTr DNA-binding domain APY29_12690 SM00851 MGS-like domain APY29_12690 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APY29_12700 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain APY29_12735 SM00899 APY29_12735 APY29_12755 SM00822 APY29_12755 APY29_12760 SM00841 Elongation factor P, C-terminal APY29_12760 SM01185 APY29_12760 APY29_12805 SM01007 Class II Aldolase and Adducin N-terminal domain APY29_12880 SM00100 Cyclic nucleotide-monophosphate binding domain APY29_12880 SM00419 helix_turn_helix, cAMP Regulatory protein APY29_12995 SM00014 Acid phosphatase homologues APY29_13005 SM00387 Histidine kinase-like ATPases APY29_13010 SM00448 cheY-homologous receiver domain APY29_13020 SM00052 Putative diguanylate phosphodiesterase APY29_13020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_13020 SM00267 diguanylate cyclase APY29_13090 SM00646 APY29_13090 APY29_13125 SM00758 APY29_13125 APY29_13175 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APY29_13200 SM01130 APY29_13200 APY29_13220 SM00670 Large family of predicted nucleotide-binding domains APY29_13275 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_13275 SM00091 PAS domain APY29_13275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_13290 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APY29_13300 SM00382 ATPases associated with a variety of cellular activities APY29_13340 SM00382 ATPases associated with a variety of cellular activities APY29_13350 SM01103 APY29_13350 APY29_13360 SM00257 Lysin motif APY29_13380 SM00463 Small MutS-related domain APY29_13405 SM01192 APY29_13405 APY29_13405 SM01193 APY29_13405 APY29_13430 SM00387 Histidine kinase-like ATPases APY29_13430 SM00433 TopoisomeraseII APY29_13455 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_13455 SM01091 Transporter associated domain APY29_13480 SM00382 ATPases associated with a variety of cellular activities APY29_13490 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_13640 SM01126 APY29_13640 APY29_13705 SM00091 PAS domain APY29_13705 SM00387 Histidine kinase-like ATPases APY29_13705 SM00388 His Kinase A (phosphoacceptor) domain APY29_13705 SM00448 cheY-homologous receiver domain APY29_13715 SM00448 cheY-homologous receiver domain APY29_13735 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_13745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_13745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_13810 SM00240 Forkhead associated domain APY29_13830 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_13830 SM00866 APY29_13830 APY29_13870 SM00564 beta-propeller repeat APY29_13875 SM00434 DNA Topoisomerase IV APY29_13895 SM00292 breast cancer carboxy-terminal domain APY29_13895 SM00532 Ligase N family APY29_13905 SM01126 APY29_13905 APY29_13915 SM00771 ZipA, C-terminal domain (FtsZ-binding) APY29_13920 SM00968 SMC proteins Flexible Hinge Domain APY29_13990 SM00421 helix_turn_helix, Lux Regulon APY29_13990 SM00448 cheY-homologous receiver domain APY29_14035 SM00947 Carbonic anhydrase APY29_14060 SM00479 APY29_14060 APY29_14090 SM00981 APY29_14090 APY29_14095 SM00382 ATPases associated with a variety of cellular activities APY29_14115 SM00644 APY29_14115 APY29_14125 SM00450 Rhodanese Homology Domain APY29_14150 SM00478 endonuclease III APY29_14160 SM00947 Carbonic anhydrase APY29_14195 SM00382 ATPases associated with a variety of cellular activities APY29_14210 SM00479 APY29_14210 APY29_14225 SM00967 RNA 2'-O ribose methyltransferase substrate binding APY29_14235 SM00316 Ribosomal protein S1-like RNA-binding domain APY29_14235 SM00357 Cold shock protein domain APY29_14235 SM00955 APY29_14235 APY29_14255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APY29_14265 SM01018 B12 binding domain APY29_14285 SM00354 helix_turn _helix lactose operon repressor APY29_14305 SM00984 UDP binding domain APY29_14325 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_14330 SM00382 ATPases associated with a variety of cellular activities APY29_14360 SM00116 Domain in cystathionine beta-synthase and other proteins. APY29_14360 SM01091 Transporter associated domain APY29_14380 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. APY29_14390 SM00861 Transketolase, pyrimidine binding domain APY29_14415 SM00382 ATPases associated with a variety of cellular activities APY29_14455 SM00271 DnaJ molecular chaperone homology domain APY29_14530 SM00382 ATPases associated with a variety of cellular activities APY29_14555 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_14555 SM00267 diguanylate cyclase APY29_14565 SM00267 diguanylate cyclase APY29_14685 SM00357 Cold shock protein domain APY29_14700 SM00947 Carbonic anhydrase APY29_14720 SM00382 ATPases associated with a variety of cellular activities APY29_14740 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_14770 SM00631 APY29_14770 APY29_14775 SM01217 APY29_14775 APY29_14800 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_14810 SM00434 DNA Topoisomerase IV APY29_14835 SM00710 Parallel beta-helix repeats APY29_14835 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses APY29_14840 SM01172 APY29_14840 APY29_14860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_14870 SM00972 Spore Coat Protein U domain APY29_14885 SM00972 Spore Coat Protein U domain APY29_14910 SM00267 diguanylate cyclase APY29_14940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APY29_14980 SM00481 DNA polymerase alpha chain like domain APY29_15065 SM00382 ATPases associated with a variety of cellular activities APY29_15275 SM00671 Sel1-like repeats. APY29_15275 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. APY29_15280 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APY29_15285 SM00869 Autotransporter beta-domain APY29_15305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_15305 SM00267 diguanylate cyclase APY29_15335 SM00487 DEAD-like helicases superfamily APY29_15335 SM00490 helicase superfamily c-terminal domain APY29_15350 SM00357 Cold shock protein domain APY29_15395 SM00448 cheY-homologous receiver domain APY29_15410 SM00358 Double-stranded RNA binding motif APY29_15410 SM00535 Ribonuclease III family APY29_15425 SM00838 Elongation factor G C-terminus APY29_15430 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APY29_15480 SM00530 Helix-turn-helix XRE-family like proteins APY29_15505 SM00812 Alpha-L-fucosidase APY29_15560 SM00533 DNA-binding domain of DNA mismatch repair MUTS family APY29_15560 SM00534 ATPase domain of DNA mismatch repair MUTS family APY29_15630 SM00382 ATPases associated with a variety of cellular activities APY29_15630 SM00962 SRP54-type protein, GTPase domain APY29_15630 SM00963 SRP54-type protein, helical bundle domain APY29_15655 SM00813 Alpha-L-arabinofuranosidase C-terminus APY29_15665 SM00448 cheY-homologous receiver domain APY29_15670 SM00091 PAS domain APY29_15670 SM00387 Histidine kinase-like ATPases APY29_15670 SM00388 His Kinase A (phosphoacceptor) domain APY29_15675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_15675 SM00387 Histidine kinase-like ATPases APY29_15675 SM00388 His Kinase A (phosphoacceptor) domain APY29_15675 SM00448 cheY-homologous receiver domain APY29_15680 SM00138 Methyltransferase, chemotaxis proteins APY29_15690 SM00387 Histidine kinase-like ATPases APY29_15690 SM00388 His Kinase A (phosphoacceptor) domain APY29_15690 SM00448 cheY-homologous receiver domain APY29_15715 SM00387 Histidine kinase-like ATPases APY29_15715 SM00388 His Kinase A (phosphoacceptor) domain APY29_15715 SM00448 cheY-homologous receiver domain APY29_15720 SM00387 Histidine kinase-like ATPases APY29_15720 SM00388 His Kinase A (phosphoacceptor) domain APY29_15755 SM00342 helix_turn_helix, arabinose operon control protein APY29_15760 SM00862 Transcriptional regulatory protein, C terminal APY29_15770 SM00382 ATPases associated with a variety of cellular activities APY29_15775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APY29_15955 SM00904 Riboflavin kinase APY29_16045 SM00244 prohibitin homologues APY29_16065 SM00478 endonuclease III APY29_16080 SM00421 helix_turn_helix, Lux Regulon APY29_16080 SM00448 cheY-homologous receiver domain APY29_16120 SM00387 Histidine kinase-like ATPases APY29_16120 SM00388 His Kinase A (phosphoacceptor) domain APY29_16125 SM00448 cheY-homologous receiver domain APY29_16125 SM00862 Transcriptional regulatory protein, C terminal APY29_16175 SM01060 APY29_16175 APY29_16210 SM00091 PAS domain APY29_16210 SM00342 helix_turn_helix, arabinose operon control protein APY29_16260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_16270 SM00481 DNA polymerase alpha chain like domain APY29_16290 SM00966 SpoVT / AbrB like domain APY29_16310 SM00974 APY29_16310 APY29_16325 SM01092 CO dehydrogenase flavoprotein C-terminal domain APY29_16330 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY29_16345 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_16350 SM00052 Putative diguanylate phosphodiesterase APY29_16410 SM00855 Phosphoglycerate mutase family APY29_16445 SM00487 DEAD-like helicases superfamily APY29_16445 SM00490 helicase superfamily c-terminal domain APY29_16475 SM00822 APY29_16475 APY29_16490 SM00788 Adenylosuccinate synthetase APY29_16495 SM01321 APY29_16495 APY29_16500 SM00244 prohibitin homologues APY29_16505 SM00244 prohibitin homologues APY29_16510 SM00448 cheY-homologous receiver domain APY29_16515 SM00271 DnaJ molecular chaperone homology domain APY29_16550 SM01359 APY29_16550 APY29_16550 SM01360 APY29_16550 APY29_16590 SM00382 ATPases associated with a variety of cellular activities APY29_16625 SM00825 Beta-ketoacyl synthase APY29_16635 SM00822 APY29_16635 APY29_16640 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. APY29_16685 SM00382 ATPases associated with a variety of cellular activities APY29_16695 SM00460 Transglutaminase/protease-like homologues APY29_16710 SM00493 APY29_16710 APY29_16720 SM00382 ATPases associated with a variety of cellular activities APY29_16750 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_16755 SM00849 Metallo-beta-lactamase superfamily APY29_16780 SM00331 Sigma factor PP2C-like phosphatases APY29_16780 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain APY29_16785 SM00479 APY29_16785 APY29_16800 SM00849 Metallo-beta-lactamase superfamily APY29_16805 SM00257 Lysin motif APY29_16830 SM00411 bacterial (prokaryotic) histone like domain APY29_16835 SM00382 ATPases associated with a variety of cellular activities APY29_16835 SM00464 Found in ATP-dependent protease La (LON) APY29_16840 SM00382 ATPases associated with a variety of cellular activities APY29_16840 SM00994 ClpX C4-type zinc finger APY29_16840 SM01086 C-terminal, D2-small domain, of ClpB protein APY29_16860 SM00091 PAS domain APY29_16860 SM00387 Histidine kinase-like ATPases APY29_16890 SM01329 APY29_16890 APY29_16910 SM00448 cheY-homologous receiver domain APY29_16910 SM00862 Transcriptional regulatory protein, C terminal APY29_16915 SM00091 PAS domain APY29_16915 SM00387 Histidine kinase-like ATPases APY29_16915 SM00388 His Kinase A (phosphoacceptor) domain APY29_16935 SM00014 Acid phosphatase homologues APY29_16995 SM00855 Phosphoglycerate mutase family APY29_17020 SM00829 Enoylreductase APY29_17030 SM00382 ATPases associated with a variety of cellular activities APY29_17075 SM00829 Enoylreductase APY29_17105 SM00838 Elongation factor G C-terminus APY29_17150 SM00662 RNA polymerases D APY29_17155 SM00363 S4 RNA-binding domain APY29_17155 SM01390 APY29_17155 APY29_17215 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. APY29_17220 SM01374 APY29_17220 APY29_17240 SM00322 K homology RNA-binding domain APY29_17255 SM01382 APY29_17255 APY29_17255 SM01383 APY29_17255 APY29_17275 SM01403 APY29_17275 APY29_17285 SM00838 Elongation factor G C-terminus APY29_17285 SM00889 Elongation factor G, domain IV APY29_17300 SM00663 RNA polymerase I subunit A N-terminus APY29_17325 SM00649 Ribosomal protein L11/L12 APY29_17330 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. APY29_17330 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. APY29_17380 SM01400 APY29_17380 APY29_17400 SM00028 Tetratricopeptide repeats APY29_17410 SM00937 APY29_17410 APY29_17415 SM00028 Tetratricopeptide repeats APY29_17420 SM00852 Probable molybdopterin binding domain APY29_17530 SM01002 Alanine dehydrogenase/PNT, C-terminal domain APY29_17530 SM01003 Alanine dehydrogenase/PNT, N-terminal domain APY29_17560 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs APY29_17560 SM00475 5'-3' exonuclease APY29_17625 SM00421 helix_turn_helix, Lux Regulon APY29_17630 SM00387 Histidine kinase-like ATPases APY29_17630 SM00388 His Kinase A (phosphoacceptor) domain APY29_17630 SM00448 cheY-homologous receiver domain APY29_17635 SM00448 cheY-homologous receiver domain APY29_17710 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_17745 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_17745 SM00895 APY29_17745 APY29_17810 SM00650 Ribosomal RNA adenine dimethylases APY29_17825 SM00382 ATPases associated with a variety of cellular activities APY29_17885 SM00382 ATPases associated with a variety of cellular activities APY29_17895 SM00382 ATPases associated with a variety of cellular activities APY29_17950 SM00448 cheY-homologous receiver domain APY29_17950 SM00862 Transcriptional regulatory protein, C terminal APY29_17960 SM00382 ATPases associated with a variety of cellular activities APY29_17980 SM00382 ATPases associated with a variety of cellular activities APY29_18095 SM00996 S-adenosyl-L-homocysteine hydrolase APY29_18095 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APY29_18130 SM00642 Alpha-amylase domain APY29_18150 SM00944 Pro-kumamolisin, activation domain APY29_18155 SM00829 Enoylreductase APY29_18180 SM00957 SecA DEAD-like domain APY29_18180 SM00958 SecA preprotein cross-linking domain APY29_18200 SM00864 Tubulin/FtsZ family, GTPase domain APY29_18200 SM00865 Tubulin/FtsZ family, C-terminal domain APY29_18205 SM00842 Cell division protein FtsA APY29_18310 SM00448 cheY-homologous receiver domain APY29_18310 SM00862 Transcriptional regulatory protein, C terminal APY29_18315 SM00387 Histidine kinase-like ATPases APY29_18430 SM00382 ATPases associated with a variety of cellular activities APY29_18450 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_18470 SM00829 Enoylreductase APY29_18490 SM00448 cheY-homologous receiver domain APY29_18490 SM00862 Transcriptional regulatory protein, C terminal APY29_18495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_18495 SM00387 Histidine kinase-like ATPases APY29_18495 SM00388 His Kinase A (phosphoacceptor) domain APY29_18505 SM00342 helix_turn_helix, arabinose operon control protein APY29_18575 SM00354 helix_turn _helix lactose operon repressor APY29_18585 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_18585 SM00866 APY29_18585 APY29_18655 SM00382 ATPases associated with a variety of cellular activities APY29_18710 SM00387 Histidine kinase-like ATPases APY29_18710 SM00388 His Kinase A (phosphoacceptor) domain APY29_18710 SM00448 cheY-homologous receiver domain APY29_18715 SM00448 cheY-homologous receiver domain APY29_18720 SM00387 Histidine kinase-like ATPases APY29_18720 SM00388 His Kinase A (phosphoacceptor) domain APY29_18725 SM00749 bacterial OsmY and nodulation domain APY29_18735 SM01350 APY29_18735 APY29_18790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APY29_18790 SM00245 tail specific protease APY29_18795 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_18815 SM00936 Penicillin-binding protein 5, C-terminal domain APY29_18835 SM00710 Parallel beta-helix repeats APY29_18860 SM00268 Actin APY29_18870 SM00382 ATPases associated with a variety of cellular activities APY29_18880 SM00829 Enoylreductase APY29_18895 SM00062 Bacterial periplasmic substrate-binding proteins APY29_18895 SM00248 ankyrin repeats APY29_18900 SM00564 beta-propeller repeat APY29_18920 SM01263 APY29_18920 APY29_18925 SM00267 diguanylate cyclase APY29_18955 SM00382 ATPases associated with a variety of cellular activities APY29_18955 SM01086 C-terminal, D2-small domain, of ClpB protein APY29_19035 SM00448 cheY-homologous receiver domain APY29_19035 SM00850 LytTr DNA-binding domain APY29_19065 SM00267 diguanylate cyclase APY29_19075 SM00637 APY29_19075 APY29_19080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APY29_19080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_19080 SM01049 APY29_19080 APY29_19085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APY29_19085 SM00091 PAS domain APY29_19085 SM00267 diguanylate cyclase APY29_19095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_19110 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain APY29_19110 SM01232 APY29_19110 APY29_19150 SM00062 Bacterial periplasmic substrate-binding proteins APY29_19175 SM00267 diguanylate cyclase APY29_19240 SM00342 helix_turn_helix, arabinose operon control protein APY29_19280 SM01126 APY29_19280 APY29_19305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_19305 SM00331 Sigma factor PP2C-like phosphatases APY29_19325 SM00345 helix_turn_helix gluconate operon transcriptional repressor APY29_19325 SM00895 APY29_19325 APY29_19335 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. APY29_19390 SM00867 YceI-like domain APY29_19405 SM00944 Pro-kumamolisin, activation domain APY29_19465 SM00883 Chaperonin 10 Kd subunit APY29_19485 SM00234 in StAR and phosphatidylcholine transfer protein APY29_19495 SM00342 helix_turn_helix, arabinose operon control protein APY29_19525 SM00878 Biotin carboxylase C-terminal domain APY29_19560 SM00530 Helix-turn-helix XRE-family like proteins APY29_19585 SM00563 Phosphate acyltransferases APY29_19605 SM00195 Dual specificity phosphatase, catalytic domain APY29_19620 SM00798 AICARFT/IMPCHase bienzyme APY29_19620 SM00851 MGS-like domain APY29_19630 SM01209 APY29_19630 APY29_19630 SM01210 APY29_19630 APY29_19655 SM00563 Phosphate acyltransferases APY29_19710 SM00052 Putative diguanylate phosphodiesterase APY29_19710 SM00267 diguanylate cyclase APY29_19710 SM00448 cheY-homologous receiver domain APY29_19715 SM00387 Histidine kinase-like ATPases APY29_19715 SM00388 His Kinase A (phosphoacceptor) domain APY29_19715 SM00448 cheY-homologous receiver domain APY29_19770 SM00100 Cyclic nucleotide-monophosphate binding domain APY29_19770 SM00419 helix_turn_helix, cAMP Regulatory protein APY29_19790 SM00903 Flavin reductase like domain APY29_19810 SM00046 Diacylglycerol kinase catalytic domain (presumed) APY29_19830 SM00271 DnaJ molecular chaperone homology domain APY29_19925 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_19945 SM00237 Domains in Na-Ca exchangers and integrin-beta4 APY29_19955 SM00861 Transketolase, pyrimidine binding domain APY29_19960 SM00326 Src homology 3 domains APY29_19970 SM00487 DEAD-like helicases superfamily APY29_19970 SM00490 helicase superfamily c-terminal domain APY29_19980 SM00822 APY29_19980 APY29_20030 SM00642 Alpha-amylase domain APY29_20040 SM00642 Alpha-amylase domain APY29_20050 SM00642 Alpha-amylase domain APY29_20055 SM00642 Alpha-amylase domain APY29_20065 SM00267 diguanylate cyclase APY29_20130 SM00382 ATPases associated with a variety of cellular activities APY29_20240 SM00729 Elongator protein 3, MiaB family, Radical SAM APY29_20240 SM00876 Biotin and Thiamin Synthesis associated domain APY29_20295 SM01228 APY29_20295 APY29_20310 SM00090 RIO-like kinase APY29_20315 SM00346 helix_turn_helix isocitrate lyase regulation APY29_20335 SM00998 Adenylosuccinate lyase C-terminus APY29_20355 SM00882 Coenzyme A transferase APY29_20360 SM00882 Coenzyme A transferase APY29_20375 SM00420 helix_turn_helix, Deoxyribose operon repressor APY29_20375 SM01134 APY29_20375 APY29_20415 SM00342 helix_turn_helix, arabinose operon control protein APY29_20435 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_20440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APY29_20620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APY29_20620 SM00387 Histidine kinase-like ATPases APY29_20620 SM00388 His Kinase A (phosphoacceptor) domain APY29_20625 SM00448 cheY-homologous receiver domain APY29_20625 SM00862 Transcriptional regulatory protein, C terminal APY29_20660 SM00422 helix_turn_helix, mercury resistance APY29_20795 SM00487 DEAD-like helicases superfamily APY29_20795 SM00490 helicase superfamily c-terminal domain APY29_20795 SM00847 Helicase associated domain (HA2) Add an annotation APY29_20825 SM00829 Enoylreductase APY29_20860 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_20935 SM00953 APY29_20935 APY29_20960 SM00878 Biotin carboxylase C-terminal domain APY29_20985 SM00100 Cyclic nucleotide-monophosphate binding domain APY29_20985 SM00267 diguanylate cyclase APY29_21010 SM00342 helix_turn_helix, arabinose operon control protein APY29_21045 SM00563 Phosphate acyltransferases APY29_21160 SM00387 Histidine kinase-like ATPases APY29_21160 SM00388 His Kinase A (phosphoacceptor) domain APY29_21185 SM00450 Rhodanese Homology Domain APY29_21245 SM00382 ATPases associated with a variety of cellular activities APY29_21245 SM00448 cheY-homologous receiver domain APY29_21250 SM00387 Histidine kinase-like ATPases APY29_21250 SM00388 His Kinase A (phosphoacceptor) domain APY29_21260 SM00938 Nitrogen regulatory protein P-II APY29_21265 SM01230 APY29_21265 APY29_21285 SM00028 Tetratricopeptide repeats APY29_21300 SM00563 Phosphate acyltransferases APY29_21310 SM00155 Phospholipase D. Active site motifs. APY29_21315 SM00867 YceI-like domain APY29_21320 SM00855 Phosphoglycerate mutase family APY29_21350 SM00530 Helix-turn-helix XRE-family like proteins APY29_21385 SM00382 ATPases associated with a variety of cellular activities APY29_21400 SM00382 ATPases associated with a variety of cellular activities APY29_21420 SM00344 helix_turn_helix ASNC type APY29_21460 SM00354 helix_turn _helix lactose operon repressor APY29_21530 SM00836 DALR anticodon binding domain APY29_21540 SM00382 ATPases associated with a variety of cellular activities APY29_21615 SM00354 helix_turn _helix lactose operon repressor APY29_21630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APY29_21690 SM01007 Class II Aldolase and Adducin N-terminal domain APY29_21715 SM00633 Glycosyl hydrolase family 10 APY29_21740 SM00633 Glycosyl hydrolase family 10 APY29_21825 SM00829 Enoylreductase APY29_21830 SM00563 Phosphate acyltransferases APY29_21840 SM00354 helix_turn _helix lactose operon repressor APY29_21865 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family APY29_21900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_21900 SM00388 His Kinase A (phosphoacceptor) domain APY29_21915 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain APY29_21915 SM01232 APY29_21915 APY29_21950 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_21950 SM00091 PAS domain APY29_22005 SM00347 helix_turn_helix multiple antibiotic resistance protein APY29_22035 SM00155 Phospholipase D. Active site motifs. APY29_22115 SM00796 Allophanate hydrolase subunit 1 APY29_22115 SM00797 Allophanate hydrolase subunit 2 APY29_22115 SM00878 Biotin carboxylase C-terminal domain APY29_22170 SM00382 ATPases associated with a variety of cellular activities APY29_22220 SM00829 Enoylreductase APY29_22260 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APY29_22260 SM00091 PAS domain APY29_22260 SM00267 diguanylate cyclase APY29_22280 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase APY29_22305 SM00014 Acid phosphatase homologues APY29_22315 SM00028 Tetratricopeptide repeats APY29_22425 SM00857 Resolvase, N terminal domain APY29_22435 SM00670 Large family of predicted nucleotide-binding domains APY29_22515 SM00857 Resolvase, N terminal domain