locus-tag class description APY30_00005 PF11638 DnaA N-terminal domain APY30_00005 PF00308 Bacterial dnaA protein APY30_00005 PF08299 Bacterial dnaA protein helix-turn-helix APY30_00010 PF02767 DNA polymerase III beta subunit, central domain APY30_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain APY30_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain APY30_00015 PF02463 RecF/RecN/SMC N terminal domain APY30_00020 PF00204 DNA gyrase B APY30_00020 PF00986 DNA gyrase B subunit, carboxyl terminus APY30_00020 PF18053 DNA gyrase B subunit insert domain APY30_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_00020 PF01751 Toprim domain APY30_00030 PF01435 Peptidase family M48 APY30_00040 PF03544 Gram-negative bacterial TonB protein C-terminal APY30_00045 PF01618 MotA/TolQ/ExbB proton channel family APY30_00050 PF02472 Biopolymer transport protein ExbD/TolR APY30_00055 PF02472 Biopolymer transport protein ExbD/TolR APY30_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APY30_00070 PF13396 Phospholipase_D-nuclease N-terminal APY30_00070 PF13091 PLD-like domain APY30_00110 PF04002 RadC-like JAB domain APY30_00120 PF01527 Transposase APY30_00125 PF13276 HTH-like domain APY30_00125 PF00665 Integrase core domain APY30_00125 PF13333 Integrase core domain APY30_00130 PF01527 Transposase APY30_00135 PF13276 HTH-like domain APY30_00135 PF13683 Integrase core domain APY30_00195 PF13180 PDZ domain APY30_00195 PF03572 Peptidase family S41 APY30_00200 PF01551 Peptidase family M23 APY30_00210 PF04389 Peptidase family M28 APY30_00220 PF00150 Cellulase (glycosyl hydrolase family 5) APY30_00225 PF00150 Cellulase (glycosyl hydrolase family 5) APY30_00235 PF00150 Cellulase (glycosyl hydrolase family 5) APY30_00240 PF08240 Alcohol dehydrogenase GroES-like domain APY30_00240 PF00107 Zinc-binding dehydrogenase APY30_00245 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APY30_00245 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_00250 PF04898 Glutamate synthase central domain APY30_00250 PF01493 GXGXG motif APY30_00250 PF00310 Glutamine amidotransferases class-II APY30_00250 PF01645 Conserved region in glutamate synthase APY30_00295 PF02397 Bacterial sugar transferase APY30_00300 PF02350 UDP-N-acetylglucosamine 2-epimerase APY30_00310 PF03808 Glycosyl transferase WecB/TagA/CpsF family APY30_00315 PF13439 Glycosyltransferase Family 4 APY30_00315 PF00534 Glycosyl transferases group 1 APY30_00335 PF00733 Asparagine synthase APY30_00335 PF13537 Glutamine amidotransferase domain APY30_00350 PF16363 GDP-mannose 4,6 dehydratase APY30_00365 PF00005 ABC transporter APY30_00365 PF00664 ABC transporter transmembrane region APY30_00380 PF13537 Glutamine amidotransferase domain APY30_00380 PF00733 Asparagine synthase APY30_00395 PF02603 HPr Serine kinase N terminus APY30_00395 PF07475 HPr Serine kinase C-terminal domain APY30_00400 PF00685 Sulfotransferase domain APY30_00475 PF09369 Domain of unknown function (DUF1998) APY30_00475 PF00270 DEAD/DEAH box helicase APY30_00475 PF00271 Helicase conserved C-terminal domain APY30_00480 PF03006 Haemolysin-III related APY30_00495 PF00106 short chain dehydrogenase APY30_00505 PF03466 LysR substrate binding domain APY30_00505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_00535 PF00294 pfkB family carbohydrate kinase APY30_00545 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase APY30_00545 PF12241 Trans-2-enoyl-CoA reductase catalytic region APY30_00545 PF07055 Enoyl reductase FAD binding domain APY30_00550 PF18500 CadC C-terminal domain 1 APY30_00550 PF00486 Transcriptional regulatory protein, C terminal APY30_00570 PF00072 Response regulator receiver domain APY30_00570 PF00196 Bacterial regulatory proteins, luxR family APY30_00575 PF07730 Histidine kinase APY30_00580 PF00144 Beta-lactamase APY30_00585 PF01070 FMN-dependent dehydrogenase APY30_00590 PF02735 Ku70/Ku80 beta-barrel domain APY30_00640 PF07883 Cupin domain APY30_00650 PF07715 TonB-dependent Receptor Plug Domain APY30_00650 PF00593 TonB dependent receptor APY30_00655 PF00155 Aminotransferase class I and II APY30_00660 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APY30_00690 PF07726 ATPase family associated with various cellular activities (AAA) APY30_00690 PF17863 AAA lid domain APY30_00740 PF00085 Thioredoxin APY30_00760 PF00293 NUDIX domain APY30_00760 PF13344 Haloacid dehalogenase-like hydrolase APY30_00790 PF11896 Domain of unknown function (DUF3416) APY30_00790 PF00128 Alpha amylase, catalytic domain APY30_00795 PF16657 Maltogenic Amylase, C-terminal domain APY30_00795 PF00128 Alpha amylase, catalytic domain APY30_00800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY30_00800 PF02806 Alpha amylase, C-terminal all-beta domain APY30_00800 PF00128 Alpha amylase, catalytic domain APY30_00835 PF01011 PQQ enzyme repeat APY30_00835 PF13570 PQQ-like domain APY30_00835 PF13360 PQQ-like domain APY30_00850 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain APY30_00850 PF06165 Glycosyltransferase family 36 APY30_00865 PF00512 His Kinase A (phospho-acceptor) domain APY30_00865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_00870 PF02659 Putative manganese efflux pump APY30_00880 PF09339 IclR helix-turn-helix domain APY30_00880 PF01614 Bacterial transcriptional regulator APY30_00885 PF07690 Major Facilitator Superfamily APY30_00890 PF05336 L-rhamnose mutarotase APY30_00895 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY30_00895 PF13378 Enolase C-terminal domain-like APY30_00900 PF01557 Fumarylacetoacetate (FAA) hydrolase family APY30_00915 PF00248 Aldo/keto reductase family APY30_00950 PF00072 Response regulator receiver domain APY30_00950 PF00196 Bacterial regulatory proteins, luxR family APY30_00955 PF16177 Acetyl-coenzyme A synthetase N-terminus APY30_00955 PF13193 AMP-binding enzyme C-terminal domain APY30_00955 PF00501 AMP-binding enzyme APY30_00965 PF04341 Protein of unknown function, DUF485 APY30_00970 PF00474 Sodium:solute symporter family APY30_00980 PF09312 SurA N-terminal domain APY30_00980 PF00639 PPIC-type PPIASE domain APY30_00990 PF00480 ROK family APY30_00995 PF03372 Endonuclease/Exonuclease/phosphatase family APY30_01005 PF04226 Transglycosylase associated protein APY30_01015 PF01648 4'-phosphopantetheinyl transferase superfamily APY30_01020 PF16655 PhoD-like phosphatase, N-terminal domain APY30_01020 PF09423 PhoD-like phosphatase APY30_01025 PF09423 PhoD-like phosphatase APY30_01025 PF16655 PhoD-like phosphatase, N-terminal domain APY30_01030 PF02527 rRNA small subunit methyltransferase G APY30_01050 PF13533 Biotin-lipoyl like APY30_01060 PF00873 AcrB/AcrD/AcrF family APY30_01065 PF00830 Ribosomal L28 family APY30_01070 PF00471 Ribosomal protein L33 APY30_01075 PF04909 Amidohydrolase APY30_01080 PF04303 PrpF protein APY30_01085 PF03737 Aldolase/RraA APY30_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_01090 PF03466 LysR substrate binding domain APY30_01095 PF13091 PLD-like domain APY30_01095 PF13396 Phospholipase_D-nuclease N-terminal APY30_01110 PF13361 UvrD-like helicase C-terminal domain APY30_01110 PF00580 UvrD/REP helicase N-terminal domain APY30_01120 PF12464 Maltose acetyltransferase APY30_01120 PF14602 Hexapeptide repeat of succinyl-transferase APY30_01145 PF05638 Type VI secretion system effector, Hcp APY30_01170 PF17871 AAA lid domain APY30_01170 PF10431 C-terminal, D2-small domain, of ClpB protein APY30_01170 PF07724 AAA domain (Cdc48 subfamily) APY30_01170 PF00004 ATPase family associated with various cellular activities (AAA) APY30_01195 PF00328 Histidine phosphatase superfamily (branch 2) APY30_01210 PF08281 Sigma-70, region 4 APY30_01210 PF04542 Sigma-70 region 2 APY30_01220 PF00069 Protein kinase domain APY30_01220 PF03793 PASTA domain APY30_01235 PF04717 Type VI secretion system, phage-baseplate injector APY30_01275 PF00069 Protein kinase domain APY30_01305 PF00476 DNA polymerase family A APY30_01305 PF01612 3'-5' exonuclease APY30_01305 PF01367 5'-3' exonuclease, C-terminal SAM fold APY30_01305 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APY30_01315 PF01218 Coproporphyrinogen III oxidase APY30_01330 PF07676 WD40-like Beta Propeller Repeat APY30_01330 PF00326 Prolyl oligopeptidase family APY30_01350 PF04820 Tryptophan halogenase APY30_01355 PF00550 Phosphopantetheine attachment site APY30_01365 PF01553 Acyltransferase APY30_01370 PF07977 FabA-like domain APY30_01425 PF00535 Glycosyl transferase family 2 APY30_01435 PF00109 Beta-ketoacyl synthase, N-terminal domain APY30_01435 PF02801 Beta-ketoacyl synthase, C-terminal domain APY30_01440 PF05166 YcgL domain APY30_01455 PF00723 Glycosyl hydrolases family 15 APY30_01460 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APY30_01460 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APY30_01465 PF02254 TrkA-N domain APY30_01465 PF00999 Sodium/hydrogen exchanger family APY30_01470 PF00194 Eukaryotic-type carbonic anhydrase APY30_01475 PF01769 Divalent cation transporter APY30_01475 PF00571 CBS domain APY30_01475 PF03448 MgtE intracellular N domain APY30_01480 PF13380 CoA binding domain APY30_01480 PF00583 Acetyltransferase (GNAT) family APY30_01480 PF13607 Succinyl-CoA ligase like flavodoxin domain APY30_01490 PF02867 Ribonucleotide reductase, barrel domain APY30_01490 PF00317 Ribonucleotide reductase, all-alpha domain APY30_01490 PF03477 ATP cone domain APY30_01495 PF00268 Ribonucleotide reductase, small chain APY30_01525 PF02558 Ketopantoate reductase PanE/ApbA APY30_01525 PF08546 Ketopantoate reductase PanE/ApbA C terminal APY30_01535 PF01061 ABC-2 type transporter APY30_01540 PF00005 ABC transporter APY30_01545 PF00111 2Fe-2S iron-sulfur cluster binding domain APY30_01545 PF00970 Oxidoreductase FAD-binding domain APY30_01545 PF00175 Oxidoreductase NAD-binding domain APY30_01550 PF01965 DJ-1/PfpI family APY30_01550 PF12833 Helix-turn-helix domain APY30_01560 PF00593 TonB dependent receptor APY30_01560 PF07715 TonB-dependent Receptor Plug Domain APY30_01570 PF16916 Dimerisation domain of Zinc Transporter APY30_01570 PF01545 Cation efflux family APY30_01575 PF02583 Metal-sensitive transcriptional repressor APY30_01580 PF01229 Glycosyl hydrolases family 39 APY30_01590 PF01381 Helix-turn-helix APY30_01600 PF00005 ABC transporter APY30_01615 PF04820 Tryptophan halogenase APY30_01640 PF00043 Glutathione S-transferase, C-terminal domain APY30_01640 PF02798 Glutathione S-transferase, N-terminal domain APY30_01645 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY30_01645 PF00326 Prolyl oligopeptidase family APY30_01685 PF00490 Delta-aminolevulinic acid dehydratase APY30_01695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_01695 PF03466 LysR substrate binding domain APY30_01705 PF00667 FAD binding domain APY30_01705 PF00258 Flavodoxin APY30_01705 PF00175 Oxidoreductase NAD-binding domain APY30_01715 PF01488 Shikimate / quinate 5-dehydrogenase APY30_01715 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APY30_01715 PF08501 Shikimate dehydrogenase substrate binding domain APY30_01730 PF06733 DEAD_2 APY30_01730 PF13307 Helicase C-terminal domain APY30_01735 PF06628 Catalase-related immune-responsive APY30_01735 PF00199 Catalase APY30_01750 PF01207 Dihydrouridine synthase (Dus) APY30_01760 PF00072 Response regulator receiver domain APY30_01760 PF00486 Transcriptional regulatory protein, C terminal APY30_01765 PF00512 His Kinase A (phospho-acceptor) domain APY30_01765 PF00672 HAMP domain APY30_01765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_01780 PF06167 Glucose-regulated metallo-peptidase M90 APY30_01790 PF02237 Biotin protein ligase C terminal domain APY30_01790 PF08279 HTH domain APY30_01790 PF03099 Biotin/lipoate A/B protein ligase family APY30_01795 PF03309 Type III pantothenate kinase APY30_01830 PF02223 Thymidylate kinase APY30_01855 PF00491 Arginase family APY30_01870 PF05532 CsbD-like APY30_01875 PF00579 tRNA synthetases class I (W and Y) APY30_01880 PF00753 Metallo-beta-lactamase superfamily APY30_01895 PF00892 EamA-like transporter family APY30_01900 PF00892 EamA-like transporter family APY30_01920 PF00005 ABC transporter APY30_01925 PF13533 Biotin-lipoyl like APY30_01930 PF07730 Histidine kinase APY30_01935 PF00072 Response regulator receiver domain APY30_01935 PF00196 Bacterial regulatory proteins, luxR family APY30_01950 PF00199 Catalase APY30_01955 PF04542 Sigma-70 region 2 APY30_01955 PF08281 Sigma-70, region 4 APY30_01965 PF00883 Cytosol aminopeptidase family, catalytic domain APY30_01965 PF02789 Cytosol aminopeptidase family, N-terminal domain APY30_01970 PF13419 Haloacid dehalogenase-like hydrolase APY30_01975 PF01594 AI-2E family transporter APY30_01995 PF00595 PDZ domain APY30_02015 PF00512 His Kinase A (phospho-acceptor) domain APY30_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_02015 PF08521 Two-component sensor kinase N-terminal APY30_02020 PF00072 Response regulator receiver domain APY30_02020 PF00486 Transcriptional regulatory protein, C terminal APY30_02025 PF01370 NAD dependent epimerase/dehydratase family APY30_02025 PF08338 Domain of unknown function (DUF1731) APY30_02065 PF01139 tRNA-splicing ligase RtcB APY30_02085 PF00440 Bacterial regulatory proteins, tetR family APY30_02090 PF00970 Oxidoreductase FAD-binding domain APY30_02090 PF00175 Oxidoreductase NAD-binding domain APY30_02090 PF00111 2Fe-2S iron-sulfur cluster binding domain APY30_02095 PF00487 Fatty acid desaturase APY30_02100 PF00563 EAL domain APY30_02100 PF12792 CSS motif domain associated with EAL APY30_02115 PF13335 Magnesium chelatase, subunit ChlI C-terminal APY30_02115 PF01078 Magnesium chelatase, subunit ChlI APY30_02120 PF04380 Membrane fusogenic activity APY30_02125 PF00543 Nitrogen regulatory protein P-II APY30_02155 PF17284 Spermidine synthase tetramerisation domain APY30_02160 PF17810 Arginine decarboxylase helical bundle domain APY30_02160 PF17944 Arginine decarboxylase C-terminal helical extension APY30_02160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY30_02165 PF00975 Thioesterase domain APY30_02165 PF00550 Phosphopantetheine attachment site APY30_02165 PF00668 Condensation domain APY30_02165 PF00501 AMP-binding enzyme APY30_02165 PF13193 AMP-binding enzyme C-terminal domain APY30_02170 PF03033 Glycosyltransferase family 28 N-terminal domain APY30_02180 PF00106 short chain dehydrogenase APY30_02195 PF03485 Arginyl tRNA synthetase N terminal domain APY30_02195 PF05746 DALR anticodon binding domain APY30_02195 PF00750 tRNA synthetases class I (R) APY30_02200 PF04002 RadC-like JAB domain APY30_02205 PF02441 Flavoprotein APY30_02205 PF04127 DNA / pantothenate metabolism flavoprotein APY30_02210 PF00692 dUTPase APY30_02215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY30_02215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY30_02215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY30_02215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY30_02230 PF00535 Glycosyl transferase family 2 APY30_02235 PF01370 NAD dependent epimerase/dehydratase family APY30_02245 PF02195 ParB-like nuclease domain APY30_02245 PF17762 HTH domain found in ParB protein APY30_02250 PF13614 AAA domain APY30_02260 PF00156 Phosphoribosyl transferase domain APY30_02265 PF03372 Endonuclease/Exonuclease/phosphatase family APY30_02270 PF07690 Major Facilitator Superfamily APY30_02280 PF03702 Anhydro-N-acetylmuramic acid kinase APY30_02285 PF01551 Peptidase family M23 APY30_02285 PF04225 Opacity-associated protein A LysM-like domain APY30_02290 PF00579 tRNA synthetases class I (W and Y) APY30_02325 PF14850 DNA-binding domain of Proline dehydrogenase APY30_02325 PF00171 Aldehyde dehydrogenase family APY30_02325 PF01619 Proline dehydrogenase APY30_02325 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APY30_02335 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APY30_02335 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APY30_02340 PF00115 Cytochrome C and Quinol oxidase polypeptide I APY30_02345 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 APY30_02350 PF00510 Cytochrome c oxidase subunit III APY30_02375 PF01040 UbiA prenyltransferase family APY30_02385 PF13593 SBF-like CPA transporter family (DUF4137) APY30_02390 PF01807 CHC2 zinc finger APY30_02390 PF10410 DnaB-helicase binding domain of primase APY30_02390 PF08275 DNA primase catalytic core, N-terminal domain APY30_02390 PF08278 DNA primase DnaG DnaB-binding APY30_02395 PF03631 Virulence factor BrkB APY30_02400 PF09424 Yqey-like protein APY30_02405 PF01165 Ribosomal protein S21 APY30_02410 PF00814 Glycoprotease family APY30_02415 PF02152 Dihydroneopterin aldolase APY30_02420 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY30_02420 PF14310 Fibronectin type III-like domain APY30_02420 PF00933 Glycosyl hydrolase family 3 N terminal domain APY30_02425 PF07995 Glucose / Sorbosone dehydrogenase APY30_02430 PF05360 yiaA/B two helix domain APY30_02445 PF13520 Amino acid permease APY30_02455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY30_02455 PF13378 Enolase C-terminal domain-like APY30_02465 PF01510 N-acetylmuramoyl-L-alanine amidase APY30_02470 PF01427 D-ala-D-ala dipeptidase APY30_02510 PF07063 Domain of unknown function (DUF1338) APY30_02515 PF00873 AcrB/AcrD/AcrF family APY30_02520 PF00873 AcrB/AcrD/AcrF family APY30_02525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_02530 PF01546 Peptidase family M20/M25/M40 APY30_02530 PF07687 Peptidase dimerisation domain APY30_02535 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APY30_02535 PF14489 QueF-like protein APY30_02550 PF03971 Monomeric isocitrate dehydrogenase APY30_02560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_02560 PF03466 LysR substrate binding domain APY30_02565 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) APY30_02575 PF07498 Rho termination factor, N-terminal domain APY30_02575 PF07497 Rho termination factor, RNA-binding domain APY30_02575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY30_02580 PF00085 Thioredoxin APY30_02585 PF00270 DEAD/DEAH box helicase APY30_02585 PF00271 Helicase conserved C-terminal domain APY30_02585 PF12300 ATP-dependent RNA helicase RhlB APY30_02590 PF00005 ABC transporter APY30_02595 PF18075 FtsX extracellular domain APY30_02600 PF00072 Response regulator receiver domain APY30_02600 PF01339 CheB methylesterase APY30_02605 PF03167 Uracil DNA glycosylase superfamily APY30_02610 PF04542 Sigma-70 region 2 APY30_02610 PF04545 Sigma-70, region 4 APY30_02615 PF03458 UPF0126 domain APY30_02620 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_02635 PF13417 Glutathione S-transferase, N-terminal domain APY30_02635 PF00043 Glutathione S-transferase, C-terminal domain APY30_02640 PF17764 3′ DNA-binding domain (3′BD) APY30_02640 PF00270 DEAD/DEAH box helicase APY30_02640 PF00271 Helicase conserved C-terminal domain APY30_02640 PF18074 Primosomal protein N C-terminal domain APY30_02640 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APY30_02660 PF01554 MatE APY30_02665 PF01343 Peptidase family S49 APY30_02690 PF01300 Telomere recombination APY30_02695 PF01131 DNA topoisomerase APY30_02695 PF01751 Toprim domain APY30_02695 PF13368 Topoisomerase C-terminal repeat APY30_02705 PF07963 Prokaryotic N-terminal methylation motif APY30_02705 PF00114 Pilin (bacterial filament) APY30_02710 PF04361 Protein of unknown function (DUF494) APY30_02715 PF17782 DprA winged helix domain APY30_02715 PF02481 DNA recombination-mediator protein A APY30_02720 PF01476 LysM domain APY30_02725 PF01327 Polypeptide deformylase APY30_02730 PF02911 Formyl transferase, C-terminal domain APY30_02730 PF00551 Formyl transferase APY30_02735 PF01029 NusB family APY30_02735 PF01189 16S rRNA methyltransferase RsmB/F APY30_02750 PF00535 Glycosyl transferase family 2 APY30_02770 PF00925 GTP cyclohydrolase II APY30_02785 PF03279 Bacterial lipid A biosynthesis acyltransferase APY30_02790 PF02580 D-Tyr-tRNA(Tyr) deacylase APY30_02795 PF04539 Sigma-70 region 3 APY30_02795 PF03979 Sigma-70 factor, region 1.1 APY30_02795 PF00140 Sigma-70 factor, region 1.2 APY30_02795 PF04545 Sigma-70, region 4 APY30_02795 PF04542 Sigma-70 region 2 APY30_02795 PF04546 Sigma-70, non-essential region APY30_02810 PF00589 Phage integrase family APY30_02810 PF13356 Arm DNA-binding domain APY30_02815 PF12728 Helix-turn-helix domain APY30_02845 PF00176 SNF2 family N-terminal domain APY30_02845 PF00271 Helicase conserved C-terminal domain APY30_02875 PF00557 Metallopeptidase family M24 APY30_02920 PF02525 Flavodoxin-like fold APY30_02925 PF03466 LysR substrate binding domain APY30_02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_02945 PF00005 ABC transporter APY30_02960 PF00593 TonB dependent receptor APY30_02960 PF07715 TonB-dependent Receptor Plug Domain APY30_03005 PF13823 Alcohol dehydrogenase GroES-associated APY30_03005 PF00107 Zinc-binding dehydrogenase APY30_03005 PF08240 Alcohol dehydrogenase GroES-like domain APY30_03020 PF00005 ABC transporter APY30_03020 PF00664 ABC transporter transmembrane region APY30_03030 PF03275 UDP-galactopyranose mutase APY30_03040 PF16363 GDP-mannose 4,6 dehydratase APY30_03060 PF02322 Cytochrome bd terminal oxidase subunit II APY30_03065 PF01654 Cytochrome bd terminal oxidase subunit I APY30_03075 PF00072 Response regulator receiver domain APY30_03075 PF00158 Sigma-54 interaction domain APY30_03075 PF02954 Bacterial regulatory protein, Fis family APY30_03110 PF05067 Manganese containing catalase APY30_03115 PF05974 Domain of unknown function (DUF892) APY30_03125 PF01527 Transposase APY30_03130 PF13276 HTH-like domain APY30_03130 PF00665 Integrase core domain APY30_03130 PF13333 Integrase core domain APY30_03140 PF00672 HAMP domain APY30_03140 PF02743 Cache domain APY30_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_03140 PF06580 Histidine kinase APY30_03145 PF04397 LytTr DNA-binding domain APY30_03145 PF00072 Response regulator receiver domain APY30_03155 PF13520 Amino acid permease APY30_03175 PF01431 Peptidase family M13 APY30_03175 PF05649 Peptidase family M13 APY30_03185 PF00248 Aldo/keto reductase family APY30_03190 PF03358 NADPH-dependent FMN reductase APY30_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_03195 PF03466 LysR substrate binding domain APY30_03205 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY30_03215 PF03167 Uracil DNA glycosylase superfamily APY30_03220 PF02469 Fasciclin domain APY30_03225 PF00999 Sodium/hydrogen exchanger family APY30_03230 PF00005 ABC transporter APY30_03235 PF01061 ABC-2 type transporter APY30_03260 PF00691 OmpA family APY30_03260 PF13677 Membrane MotB of proton-channel complex MotA/MotB APY30_03265 PF01618 MotA/TolQ/ExbB proton channel family APY30_03275 PF01641 SelR domain APY30_03285 PF01037 Lrp/AsnC ligand binding domain APY30_03290 PF01266 FAD dependent oxidoreductase APY30_03295 PF01168 Alanine racemase, N-terminal domain APY30_03295 PF00842 Alanine racemase, C-terminal domain APY30_03315 PF00512 His Kinase A (phospho-acceptor) domain APY30_03315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_03315 PF00989 PAS fold APY30_03325 PF07995 Glucose / Sorbosone dehydrogenase APY30_03335 PF08468 Methyltransferase small domain N-terminal APY30_03335 PF05175 Methyltransferase small domain APY30_03340 PF01479 S4 domain APY30_03340 PF00849 RNA pseudouridylate synthase APY30_03345 PF13419 Haloacid dehalogenase-like hydrolase APY30_03370 PF00072 Response regulator receiver domain APY30_03370 PF00989 PAS fold APY30_03370 PF01627 Hpt domain APY30_03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_03370 PF00512 His Kinase A (phospho-acceptor) domain APY30_03370 PF18415 Histidine kinase receptor ArcB trans-membrane domain APY30_03380 PF04461 Protein of unknown function (DUF520) APY30_03385 PF00892 EamA-like transporter family APY30_03390 PF00005 ABC transporter APY30_03390 PF09383 NIL domain APY30_03395 PF00528 Binding-protein-dependent transport system inner membrane component APY30_03400 PF03180 NLPA lipoprotein APY30_03445 PF02817 e3 binding domain APY30_03445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY30_03445 PF00364 Biotin-requiring enzyme APY30_03455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY30_03455 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_03475 PF00119 ATP synthase A chain APY30_03480 PF00137 ATP synthase subunit C APY30_03485 PF00430 ATP synthase B/B' CF(0) APY30_03490 PF00213 ATP synthase delta (OSCP) subunit APY30_03495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY30_03495 PF00306 ATP synthase alpha/beta chain, C terminal domain APY30_03495 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY30_03500 PF00231 ATP synthase APY30_03505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY30_03505 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY30_03510 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APY30_03510 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APY30_03525 PF12804 MobA-like NTP transferase domain APY30_03525 PF14602 Hexapeptide repeat of succinyl-transferase APY30_03525 PF00132 Bacterial transferase hexapeptide (six repeats) APY30_03530 PF00512 His Kinase A (phospho-acceptor) domain APY30_03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_03535 PF00158 Sigma-54 interaction domain APY30_03535 PF00072 Response regulator receiver domain APY30_03535 PF02954 Bacterial regulatory protein, Fis family APY30_03545 PF12704 MacB-like periplasmic core domain APY30_03545 PF02687 FtsX-like permease family APY30_03550 PF12704 MacB-like periplasmic core domain APY30_03550 PF02687 FtsX-like permease family APY30_03555 PF00005 ABC transporter APY30_03555 PF02687 FtsX-like permease family APY30_03555 PF12704 MacB-like periplasmic core domain APY30_03560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_03565 PF01380 SIS domain APY30_03590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY30_03595 PF05275 Copper resistance protein B precursor (CopB) APY30_03600 PF07732 Multicopper oxidase APY30_03600 PF07731 Multicopper oxidase APY30_03600 PF00394 Multicopper oxidase APY30_03615 PF01432 Peptidase family M3 APY30_03625 PF02801 Beta-ketoacyl synthase, C-terminal domain APY30_03625 PF00109 Beta-ketoacyl synthase, N-terminal domain APY30_03630 PF07977 FabA-like domain APY30_03635 PF00817 impB/mucB/samB family APY30_03635 PF11799 impB/mucB/samB family C-terminal domain APY30_03640 PF13419 Haloacid dehalogenase-like hydrolase APY30_03645 PF07715 TonB-dependent Receptor Plug Domain APY30_03645 PF00593 TonB dependent receptor APY30_03650 PF00756 Putative esterase APY30_03660 PF13185 GAF domain APY30_03675 PF01242 6-pyruvoyl tetrahydropterin synthase APY30_03680 PF00593 TonB dependent receptor APY30_03680 PF07715 TonB-dependent Receptor Plug Domain APY30_03690 PF00270 DEAD/DEAH box helicase APY30_03690 PF00271 Helicase conserved C-terminal domain APY30_03700 PF14497 Glutathione S-transferase, C-terminal domain APY30_03700 PF02798 Glutathione S-transferase, N-terminal domain APY30_03705 PF00437 Type II/IV secretion system protein APY30_03725 PF00571 CBS domain APY30_03725 PF00291 Pyridoxal-phosphate dependent enzyme APY30_03730 PF01053 Cys/Met metabolism PLP-dependent enzyme APY30_03740 PF00534 Glycosyl transferases group 1 APY30_03740 PF13439 Glycosyltransferase Family 4 APY30_03750 PF00005 ABC transporter APY30_03755 PF13847 Methyltransferase domain APY30_03755 PF00069 Protein kinase domain APY30_03760 PF00534 Glycosyl transferases group 1 APY30_03760 PF13477 Glycosyl transferase 4-like APY30_03765 PF16363 GDP-mannose 4,6 dehydratase APY30_03770 PF16363 GDP-mannose 4,6 dehydratase APY30_03810 PF00535 Glycosyl transferase family 2 APY30_03820 PF01012 Electron transfer flavoprotein domain APY30_03820 PF00766 Electron transfer flavoprotein FAD-binding domain APY30_03825 PF01012 Electron transfer flavoprotein domain APY30_03830 PF16363 GDP-mannose 4,6 dehydratase APY30_03835 PF00483 Nucleotidyl transferase APY30_03840 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APY30_03845 PF04321 RmlD substrate binding domain APY30_03850 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY30_03850 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY30_03850 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY30_03855 PF00483 Nucleotidyl transferase APY30_03855 PF01050 Mannose-6-phosphate isomerase APY30_03860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY30_03860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY30_03860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY30_03860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY30_03865 PF01144 Coenzyme A transferase APY30_03870 PF01144 Coenzyme A transferase APY30_03890 PF03886 ABC-type transport auxiliary lipoprotein component APY30_03890 PF02470 MlaD protein APY30_03895 PF00005 ABC transporter APY30_03900 PF02405 Permease MlaE APY30_03910 PF00816 H-NS histone family APY30_03915 PF03129 Anticodon binding domain APY30_03915 PF04073 Aminoacyl-tRNA editing domain APY30_03915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY30_03925 PF01066 CDP-alcohol phosphatidyltransferase APY30_03940 PF00544 Pectate lyase APY30_03945 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APY30_03945 PF01464 Transglycosylase SLT domain APY30_03955 PF00133 tRNA synthetases class I (I, L, M and V) APY30_03955 PF08264 Anticodon-binding domain of tRNA APY30_03955 PF10458 Valyl tRNA synthetase tRNA binding arm APY30_03970 PF00883 Cytosol aminopeptidase family, catalytic domain APY30_03970 PF02789 Cytosol aminopeptidase family, N-terminal domain APY30_03980 PF03739 Lipopolysaccharide export system permease LptF/LptG APY30_03995 PF00589 Phage integrase family APY30_03995 PF02899 Phage integrase, N-terminal SAM-like domain APY30_04000 PF10411 Disulfide bond isomerase protein N-terminus APY30_04000 PF13098 Thioredoxin-like domain APY30_04005 PF02769 AIR synthase related protein, C-terminal domain APY30_04005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APY30_04005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APY30_04010 PF03895 YadA-like membrane anchor domain APY30_04010 PF05658 Head domain of trimeric autotransporter adhesin APY30_04010 PF05662 Coiled stalk of trimeric autotransporter adhesin APY30_04010 PF13018 Extended Signal Peptide of Type V secretion system APY30_04015 PF04151 Bacterial pre-peptidase C-terminal domain APY30_04015 PF00082 Subtilase family APY30_04020 PF03895 YadA-like membrane anchor domain APY30_04020 PF05658 Head domain of trimeric autotransporter adhesin APY30_04020 PF13018 Extended Signal Peptide of Type V secretion system APY30_04020 PF05662 Coiled stalk of trimeric autotransporter adhesin APY30_04025 PF04151 Bacterial pre-peptidase C-terminal domain APY30_04025 PF00082 Subtilase family APY30_04030 PF00437 Type II/IV secretion system protein APY30_04030 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY30_04035 PF00482 Type II secretion system (T2SS), protein F APY30_04040 PF08334 Type II secretion system (T2SS), protein G APY30_04045 PF12019 Type II transport protein GspH APY30_04050 PF07963 Prokaryotic N-terminal methylation motif APY30_04060 PF03934 Type II secretion system (T2SS), protein K APY30_04065 PF05137 Fimbrial assembly protein (PilN) APY30_04070 PF10741 Type II secretion system (T2SS), protein M subtype b APY30_04080 PF03958 Bacterial type II/III secretion system short domain APY30_04080 PF00263 Bacterial type II and III secretion system protein APY30_04085 PF01527 Transposase APY30_04090 PF13683 Integrase core domain APY30_04090 PF13276 HTH-like domain APY30_04100 PF07702 UTRA domain APY30_04100 PF00392 Bacterial regulatory proteins, gntR family APY30_04110 PF00593 TonB dependent receptor APY30_04110 PF07715 TonB-dependent Receptor Plug Domain APY30_04150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APY30_04150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APY30_04165 PF07238 PilZ domain APY30_04165 PF00535 Glycosyl transferase family 2 APY30_04165 PF03552 Cellulose synthase APY30_04170 PF03170 Bacterial cellulose synthase subunit APY30_04175 PF01270 Glycosyl hydrolases family 8 APY30_04180 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) APY30_04200 PF03960 ArsC family APY30_04205 PF01327 Polypeptide deformylase APY30_04210 PF02645 Uncharacterised protein, DegV family COG1307 APY30_04230 PF01979 Amidohydrolase family APY30_04235 PF01979 Amidohydrolase family APY30_04250 PF00462 Glutaredoxin APY30_04255 PF01522 Polysaccharide deacetylase APY30_04260 PF07715 TonB-dependent Receptor Plug Domain APY30_04260 PF00593 TonB dependent receptor APY30_04280 PF03412 Peptidase C39 family APY30_04280 PF00005 ABC transporter APY30_04280 PF00664 ABC transporter transmembrane region APY30_04300 PF13276 HTH-like domain APY30_04300 PF13683 Integrase core domain APY30_04305 PF01527 Transposase APY30_04330 PF01527 Transposase APY30_04360 PF08450 SMP-30/Gluconolactonase/LRE-like region APY30_04365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APY30_04365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY30_04395 PF00892 EamA-like transporter family APY30_04405 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APY30_04405 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY30_04420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_04420 PF01627 Hpt domain APY30_04420 PF00072 Response regulator receiver domain APY30_04420 PF00672 HAMP domain APY30_04420 PF00512 His Kinase A (phospho-acceptor) domain APY30_04420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY30_04425 PF00672 HAMP domain APY30_04425 PF00512 His Kinase A (phospho-acceptor) domain APY30_04425 PF01627 Hpt domain APY30_04425 PF00072 Response regulator receiver domain APY30_04425 PF17149 Periplasmic sensor domain found in signal transduction proteins APY30_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_04430 PF00072 Response regulator receiver domain APY30_04430 PF00196 Bacterial regulatory proteins, luxR family APY30_04440 PF01625 Peptide methionine sulfoxide reductase APY30_04450 PF00923 Transaldolase/Fructose-6-phosphate aldolase APY30_04455 PF14760 Rnk N-terminus APY30_04455 PF01272 Transcription elongation factor, GreA/GreB, C-term APY30_04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_04460 PF03466 LysR substrate binding domain APY30_04465 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_04465 PF13192 Thioredoxin domain APY30_04470 PF10417 C-terminal domain of 1-Cys peroxiredoxin APY30_04470 PF00578 AhpC/TSA family APY30_04475 PF05175 Methyltransferase small domain APY30_04475 PF17827 PrmC N-terminal domain APY30_04480 PF00561 alpha/beta hydrolase fold APY30_04490 PF00293 NUDIX domain APY30_04495 PF00476 DNA polymerase family A APY30_04495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APY30_04495 PF01367 5'-3' exonuclease, C-terminal SAM fold APY30_04495 PF01612 3'-5' exonuclease APY30_04525 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APY30_04525 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APY30_04525 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APY30_04545 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APY30_04550 PF02233 NAD(P) transhydrogenase beta subunit APY30_04565 PF01063 Amino-transferase class IV APY30_04580 PF04151 Bacterial pre-peptidase C-terminal domain APY30_04580 PF00082 Subtilase family APY30_04585 PF04073 Aminoacyl-tRNA editing domain APY30_04595 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain APY30_04595 PF17189 Glycosyl hydrolase family 30 beta sandwich domain APY30_04605 PF03358 NADPH-dependent FMN reductase APY30_04610 PF03631 Virulence factor BrkB APY30_04615 PF08534 Redoxin APY30_04620 PF00708 Acylphosphatase APY30_04630 PF03976 Polyphosphate kinase 2 (PPK2) APY30_04635 PF00994 Probable molybdopterin binding domain APY30_04645 PF00472 RF-1 domain APY30_04645 PF03462 PCRF domain APY30_04650 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APY30_04650 PF01488 Shikimate / quinate 5-dehydrogenase APY30_04650 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APY30_04660 PF03550 Outer membrane lipoprotein LolB APY30_04665 PF00288 GHMP kinases N terminal domain APY30_04665 PF08544 GHMP kinases C terminal APY30_04675 PF14572 Phosphoribosyl synthetase-associated domain APY30_04675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APY30_04680 PF14693 Ribosomal protein TL5, C-terminal domain APY30_04680 PF01386 Ribosomal L25p family APY30_04685 PF01195 Peptidyl-tRNA hydrolase APY30_04690 PF01926 50S ribosome-binding GTPase APY30_04690 PF06071 Protein of unknown function (DUF933) APY30_04710 PF00009 Elongation factor Tu GTP binding domain APY30_04710 PF03144 Elongation factor Tu domain 2 APY30_04710 PF03143 Elongation factor Tu C-terminal domain APY30_04720 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APY30_04725 PF00467 KOW motif APY30_04725 PF02357 Transcription termination factor nusG APY30_04730 PF00298 Ribosomal protein L11, RNA binding domain APY30_04730 PF03946 Ribosomal protein L11, N-terminal domain APY30_04735 PF00687 Ribosomal protein L1p/L10e family APY30_04740 PF00466 Ribosomal protein L10 APY30_04745 PF16320 Ribosomal protein L7/L12 dimerisation domain APY30_04745 PF00542 Ribosomal protein L7/L12 C-terminal domain APY30_04750 PF04560 RNA polymerase Rpb2, domain 7 APY30_04750 PF04563 RNA polymerase beta subunit APY30_04750 PF00562 RNA polymerase Rpb2, domain 6 APY30_04750 PF04561 RNA polymerase Rpb2, domain 2 APY30_04750 PF10385 RNA polymerase beta subunit external 1 domain APY30_04750 PF04565 RNA polymerase Rpb2, domain 3 APY30_04755 PF00623 RNA polymerase Rpb1, domain 2 APY30_04755 PF04983 RNA polymerase Rpb1, domain 3 APY30_04755 PF05000 RNA polymerase Rpb1, domain 4 APY30_04755 PF04997 RNA polymerase Rpb1, domain 1 APY30_04755 PF04998 RNA polymerase Rpb1, domain 5 APY30_04760 PF00164 Ribosomal protein S12/S23 APY30_04765 PF00177 Ribosomal protein S7p/S5e APY30_04770 PF03144 Elongation factor Tu domain 2 APY30_04770 PF00009 Elongation factor Tu GTP binding domain APY30_04770 PF00679 Elongation factor G C-terminus APY30_04770 PF03764 Elongation factor G, domain IV APY30_04770 PF14492 Elongation Factor G, domain II APY30_04775 PF00009 Elongation factor Tu GTP binding domain APY30_04775 PF03144 Elongation factor Tu domain 2 APY30_04775 PF03143 Elongation factor Tu C-terminal domain APY30_04780 PF00338 Ribosomal protein S10p/S20e APY30_04785 PF00297 Ribosomal protein L3 APY30_04790 PF00573 Ribosomal protein L4/L1 family APY30_04795 PF00276 Ribosomal protein L23 APY30_04800 PF00181 Ribosomal Proteins L2, RNA binding domain APY30_04800 PF03947 Ribosomal Proteins L2, C-terminal domain APY30_04805 PF00203 Ribosomal protein S19 APY30_04810 PF00237 Ribosomal protein L22p/L17e APY30_04815 PF07650 KH domain APY30_04815 PF00189 Ribosomal protein S3, C-terminal domain APY30_04820 PF00252 Ribosomal protein L16p/L10e APY30_04825 PF00831 Ribosomal L29 protein APY30_04830 PF00366 Ribosomal protein S17 APY30_04835 PF00238 Ribosomal protein L14p/L23e APY30_04840 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APY30_04840 PF00467 KOW motif APY30_04845 PF00281 Ribosomal protein L5 APY30_04845 PF00673 ribosomal L5P family C-terminus APY30_04850 PF00253 Ribosomal protein S14p/S29e APY30_04855 PF00410 Ribosomal protein S8 APY30_04860 PF00347 Ribosomal protein L6 APY30_04865 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APY30_04870 PF00333 Ribosomal protein S5, N-terminal domain APY30_04870 PF03719 Ribosomal protein S5, C-terminal domain APY30_04875 PF00327 Ribosomal protein L30p/L7e APY30_04880 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APY30_04885 PF00344 SecY translocase APY30_04890 PF00416 Ribosomal protein S13/S18 APY30_04895 PF00411 Ribosomal protein S11 APY30_04900 PF01479 S4 domain APY30_04900 PF00163 Ribosomal protein S4/S9 N-terminal domain APY30_04905 PF01000 RNA polymerase Rpb3/RpoA insert domain APY30_04905 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APY30_04905 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APY30_04910 PF01196 Ribosomal protein L17 APY30_04915 PF02600 Disulfide bond formation protein DsbB APY30_04930 PF01474 Class-II DAHP synthetase family APY30_04955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APY30_04960 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APY30_04960 PF00056 lactate/malate dehydrogenase, NAD binding domain APY30_04965 PF02798 Glutathione S-transferase, N-terminal domain APY30_04965 PF00043 Glutathione S-transferase, C-terminal domain APY30_04975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APY30_04975 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_04980 PF08240 Alcohol dehydrogenase GroES-like domain APY30_04980 PF00107 Zinc-binding dehydrogenase APY30_04985 PF05736 OprF membrane domain APY30_04985 PF00691 OmpA family APY30_04995 PF00849 RNA pseudouridylate synthase APY30_05005 PF00155 Aminotransferase class I and II APY30_05015 PF00528 Binding-protein-dependent transport system inner membrane component APY30_05020 PF00528 Binding-protein-dependent transport system inner membrane component APY30_05025 PF12857 TOBE-like domain APY30_05025 PF00005 ABC transporter APY30_05025 PF17850 CysA C-terminal regulatory domain APY30_05035 PF08240 Alcohol dehydrogenase GroES-like domain APY30_05035 PF00107 Zinc-binding dehydrogenase APY30_05045 PF05506 Domain of unknown function (DUF756) APY30_05045 PF04185 Phosphoesterase family APY30_05050 PF10459 Peptidase S46 APY30_05055 PF10459 Peptidase S46 APY30_05060 PF00300 Histidine phosphatase superfamily (branch 1) APY30_05065 PF02875 Mur ligase family, glutamate ligase domain APY30_05065 PF08245 Mur ligase middle domain APY30_05080 PF00156 Phosphoribosyl transferase domain APY30_05115 PF00149 Calcineurin-like phosphoesterase APY30_05120 PF01569 PAP2 superfamily APY30_05130 PF02541 Ppx/GppA phosphatase family APY30_05135 PF13089 Polyphosphate kinase N-terminal domain APY30_05135 PF17941 Polyphosphate kinase C-terminal domain 1 APY30_05135 PF02503 Polyphosphate kinase middle domain APY30_05135 PF13090 Polyphosphate kinase C-terminal domain 2 APY30_05140 PF00512 His Kinase A (phospho-acceptor) domain APY30_05140 PF11808 Phosphate regulon sensor protein PhoR APY30_05140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_05140 PF00989 PAS fold APY30_05145 PF00486 Transcriptional regulatory protein, C terminal APY30_05145 PF00072 Response regulator receiver domain APY30_05150 PF01435 Peptidase family M48 APY30_05150 PF13181 Tetratricopeptide repeat APY30_05155 PF00462 Glutaredoxin APY30_05165 PF00180 Isocitrate/isopropylmalate dehydrogenase APY30_05205 PF01527 Transposase APY30_05210 PF13276 HTH-like domain APY30_05210 PF13333 Integrase core domain APY30_05210 PF00665 Integrase core domain APY30_05245 PF00182 Chitinase class I APY30_05310 PF00989 PAS fold APY30_05310 PF00512 His Kinase A (phospho-acceptor) domain APY30_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_05320 PF05697 Bacterial trigger factor protein (TF) APY30_05320 PF05698 Bacterial trigger factor protein (TF) C-terminus APY30_05325 PF00574 Clp protease APY30_05330 PF10431 C-terminal, D2-small domain, of ClpB protein APY30_05330 PF07724 AAA domain (Cdc48 subfamily) APY30_05330 PF06689 ClpX C4-type zinc finger APY30_05335 PF02190 ATP-dependent protease La (LON) substrate-binding domain APY30_05335 PF05362 Lon protease (S16) C-terminal proteolytic domain APY30_05335 PF00004 ATPase family associated with various cellular activities (AAA) APY30_05340 PF00216 Bacterial DNA-binding protein APY30_05365 PF01476 LysM domain APY30_05365 PF05257 CHAP domain APY30_05370 PF16123 Hydroxyacylglutathione hydrolase C-terminus APY30_05370 PF00753 Metallo-beta-lactamase superfamily APY30_05380 PF00075 RNase H APY30_05385 PF00929 Exonuclease APY30_05405 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APY30_05415 PF12706 Beta-lactamase superfamily domain APY30_05415 PF00753 Metallo-beta-lactamase superfamily APY30_05420 PF06463 Molybdenum Cofactor Synthesis C APY30_05420 PF04055 Radical SAM superfamily APY30_05430 PF01967 MoaC family APY30_05435 PF02597 ThiS family APY30_05440 PF02391 MoaE protein APY30_05450 PF12169 DNA polymerase III subunits gamma and tau domain III APY30_05450 PF12170 DNA polymerase III tau subunit V interacting with alpha APY30_05455 PF02575 YbaB/EbfC DNA-binding family APY30_05460 PF02132 RecR protein APY30_05460 PF13662 Toprim domain APY30_05465 PF01230 HIT domain APY30_05475 PF11992 Domain of unknown function (DUF3488) APY30_05475 PF13559 Domain of unknown function (DUF4129) APY30_05475 PF01841 Transglutaminase-like superfamily APY30_05485 PF17863 AAA lid domain APY30_05485 PF07726 ATPase family associated with various cellular activities (AAA) APY30_05505 PF02545 Maf-like protein APY30_05510 PF02620 Large ribosomal RNA subunit accumulation protein YceD APY30_05515 PF01783 Ribosomal L32p protein family APY30_05520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY30_05520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY30_05530 PF00698 Acyl transferase domain APY30_05540 PF00550 Phosphopantetheine attachment site APY30_05545 PF00109 Beta-ketoacyl synthase, N-terminal domain APY30_05545 PF02801 Beta-ketoacyl synthase, C-terminal domain APY30_05550 PF00425 chorismate binding enzyme APY30_05550 PF04715 Anthranilate synthase component I, N terminal region APY30_05555 PF02618 YceG-like family APY30_05560 PF09115 DNA polymerase III, delta subunit, C terminal APY30_05580 PF06506 Propionate catabolism activator APY30_05580 PF00158 Sigma-54 interaction domain APY30_05580 PF02954 Bacterial regulatory protein, Fis family APY30_05590 PF00285 Citrate synthase, C-terminal domain APY30_05595 PF00694 Aconitase C-terminal domain APY30_05595 PF00330 Aconitase family (aconitate hydratase) APY30_05605 PF04303 PrpF protein APY30_05610 PF07715 TonB-dependent Receptor Plug Domain APY30_05610 PF00593 TonB dependent receptor APY30_05620 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain APY30_05620 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain APY30_05620 PF00207 Alpha-2-macroglobulin family APY30_05620 PF17962 Bacterial macroglobulin domain 6 APY30_05620 PF07703 Alpha-2-macroglobulin bait region domain APY30_05620 PF11974 Bacterial alpha-2-macroglobulin MG3 domain APY30_05620 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain APY30_05620 PF01835 MG2 domain APY30_05635 PF06832 Penicillin-Binding Protein C-terminus Family APY30_05635 PF00912 Transglycosylase APY30_05635 PF00905 Penicillin binding protein transpeptidase domain APY30_05645 PF08534 Redoxin APY30_05655 PF00226 DnaJ domain APY30_05655 PF01556 DnaJ C terminal domain APY30_05660 PF00072 Response regulator receiver domain APY30_05665 PF12221 Bacterial membrane protein N terminal APY30_05665 PF01145 SPFH domain / Band 7 family APY30_05670 PF01145 SPFH domain / Band 7 family APY30_05680 PF00709 Adenylosuccinate synthetase APY30_05685 PF11838 ERAP1-like C-terminal domain APY30_05685 PF01433 Peptidase family M1 domain APY30_05700 PF00440 Bacterial regulatory proteins, tetR family APY30_05725 PF00176 SNF2 family N-terminal domain APY30_05725 PF00271 Helicase conserved C-terminal domain APY30_05740 PF01555 DNA methylase APY30_05755 PF00440 Bacterial regulatory proteins, tetR family APY30_05755 PF13977 BetI-type transcriptional repressor, C-terminal APY30_05760 PF13456 Reverse transcriptase-like APY30_05760 PF00300 Histidine phosphatase superfamily (branch 1) APY30_05765 PF01256 Carbohydrate kinase APY30_05785 PF07971 Glycosyl hydrolase family 92 APY30_05785 PF17678 Glycosyl hydrolase family 92 N-terminal domain APY30_05790 PF00106 short chain dehydrogenase APY30_05800 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_05825 PF17755 UvrA DNA-binding domain APY30_05830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APY30_05830 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APY30_05835 PF00941 FAD binding domain in molybdopterin dehydrogenase APY30_05835 PF03450 CO dehydrogenase flavoprotein C-terminal domain APY30_05840 PF00111 2Fe-2S iron-sulfur cluster binding domain APY30_05840 PF01799 [2Fe-2S] binding domain APY30_05875 PF00717 Peptidase S24-like APY30_05875 PF01726 LexA DNA binding domain APY30_05890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APY30_05890 PF14579 Helix-hairpin-helix motif APY30_05890 PF02811 PHP domain APY30_05890 PF07733 Bacterial DNA polymerase III alpha NTPase domain APY30_05895 PF00326 Prolyl oligopeptidase family APY30_05905 PF03169 OPT oligopeptide transporter protein APY30_05920 PF00326 Prolyl oligopeptidase family APY30_05920 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY30_05920 PF07676 WD40-like Beta Propeller Repeat APY30_05950 PF12833 Helix-turn-helix domain APY30_05950 PF02311 AraC-like ligand binding domain APY30_05985 PF00199 Catalase APY30_05985 PF18011 C-terminal domain found in long catalases APY30_05985 PF06628 Catalase-related immune-responsive APY30_05990 PF00248 Aldo/keto reductase family APY30_05995 PF00135 Carboxylesterase family APY30_06000 PF02347 Glycine cleavage system P-protein APY30_06005 PF07690 Major Facilitator Superfamily APY30_06020 PF00884 Sulfatase APY30_06020 PF08019 Phosphoethanolamine transferase EptA/EptB APY30_06035 PF00072 Response regulator receiver domain APY30_06035 PF00486 Transcriptional regulatory protein, C terminal APY30_06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_06040 PF00512 His Kinase A (phospho-acceptor) domain APY30_06040 PF08521 Two-component sensor kinase N-terminal APY30_06050 PF03776 Septum formation topological specificity factor MinE APY30_06055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY30_06060 PF03775 Septum formation inhibitor MinC, C-terminal domain APY30_06060 PF05209 Septum formation inhibitor MinC, N-terminal domain APY30_06070 PF07730 Histidine kinase APY30_06075 PF00072 Response regulator receiver domain APY30_06075 PF00196 Bacterial regulatory proteins, luxR family APY30_06090 PF00730 HhH-GPD superfamily base excision DNA repair protein APY30_06115 PF02222 ATP-grasp domain APY30_06125 PF04377 Arginine-tRNA-protein transferase, C terminus APY30_06125 PF04376 Arginine-tRNA-protein transferase, N terminus APY30_06155 PF00378 Enoyl-CoA hydratase/isomerase APY30_06170 PF17755 UvrA DNA-binding domain APY30_06170 PF00005 ABC transporter APY30_06170 PF17760 UvrA interaction domain APY30_06175 PF00829 Ribosomal prokaryotic L21 protein APY30_06180 PF01016 Ribosomal L27 protein APY30_06185 PF01018 GTP1/OBG APY30_06185 PF01926 50S ribosome-binding GTPase APY30_06190 PF01649 Ribosomal protein S20 APY30_06195 PF03023 Lipid II flippase MurJ APY30_06200 PF06574 FAD synthetase APY30_06200 PF01687 Riboflavin kinase APY30_06205 PF00133 tRNA synthetases class I (I, L, M and V) APY30_06205 PF06827 Zinc finger found in FPG and IleRS APY30_06205 PF08264 Anticodon-binding domain of tRNA APY30_06210 PF01252 Signal peptidase (SPase) II APY30_06215 PF02401 LytB protein APY30_06225 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APY30_06225 PF06481 COX Aromatic Rich Motif APY30_06230 PF00115 Cytochrome C and Quinol oxidase polypeptide I APY30_06235 PF00510 Cytochrome c oxidase subunit III APY30_06240 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APY30_06250 PF18073 Rubredoxin metal binding domain APY30_06255 PF05656 Protein of unknown function (DUF805) APY30_06265 PF12833 Helix-turn-helix domain APY30_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_06270 PF00183 Hsp90 protein APY30_06280 PF08678 Rsbr N terminal APY30_06280 PF01740 STAS domain APY30_06285 PF01740 STAS domain APY30_06290 PF13581 Histidine kinase-like ATPase domain APY30_06300 PF17149 Periplasmic sensor domain found in signal transduction proteins APY30_06300 PF00672 HAMP domain APY30_06300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_06300 PF00512 His Kinase A (phospho-acceptor) domain APY30_06300 PF01627 Hpt domain APY30_06300 PF00072 Response regulator receiver domain APY30_06305 PF08448 PAS fold APY30_06305 PF00512 His Kinase A (phospho-acceptor) domain APY30_06305 PF13188 PAS domain APY30_06305 PF00072 Response regulator receiver domain APY30_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_06310 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain APY30_06310 PF04616 Glycosyl hydrolases family 43 APY30_06315 PF00593 TonB dependent receptor APY30_06315 PF07715 TonB-dependent Receptor Plug Domain APY30_06320 PF00085 Thioredoxin APY30_06325 PF07237 Protein of unknown function (DUF1428) APY30_06330 PF00072 Response regulator receiver domain APY30_06330 PF00990 Diguanylate cyclase, GGDEF domain APY30_06335 PF01339 CheB methylesterase APY30_06340 PF01739 CheR methyltransferase, SAM binding domain APY30_06340 PF03705 CheR methyltransferase, all-alpha domain APY30_06345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY30_06345 PF01627 Hpt domain APY30_06345 PF00512 His Kinase A (phospho-acceptor) domain APY30_06345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_06345 PF00072 Response regulator receiver domain APY30_06345 PF00672 HAMP domain APY30_06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_06350 PF00072 Response regulator receiver domain APY30_06350 PF13426 PAS domain APY30_06355 PF00072 Response regulator receiver domain APY30_06365 PF06964 Alpha-L-arabinofuranosidase C-terminal domain APY30_06375 PF01263 Aldose 1-epimerase APY30_06385 PF01578 Cytochrome C assembly protein APY30_06390 PF02978 Signal peptide binding domain APY30_06390 PF02881 SRP54-type protein, helical bundle domain APY30_06390 PF00448 SRP54-type protein, GTPase domain APY30_06395 PF03060 Nitronate monooxygenase APY30_06400 PF01063 Amino-transferase class IV APY30_06405 PF00886 Ribosomal protein S16 APY30_06410 PF05239 PRC-barrel domain APY30_06410 PF01782 RimM N-terminal domain APY30_06415 PF01746 tRNA (Guanine-1)-methyltransferase APY30_06420 PF01245 Ribosomal protein L19 APY30_06425 PF01554 MatE APY30_06445 PF01479 S4 domain APY30_06450 PF00141 Peroxidase APY30_06460 PF01624 MutS domain I APY30_06460 PF05190 MutS family domain IV APY30_06460 PF00488 MutS domain V APY30_06460 PF05192 MutS domain III APY30_06460 PF05188 MutS domain II APY30_06475 PF01527 Transposase APY30_06480 PF00665 Integrase core domain APY30_06480 PF13333 Integrase core domain APY30_06480 PF13276 HTH-like domain APY30_06495 PF05593 RHS Repeat APY30_06495 PF03527 RHS protein APY30_06520 PF16355 Domain of unknown function (DUF4982) APY30_06520 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 APY30_06520 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY30_06520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY30_06520 PF00703 Glycosyl hydrolases family 2 APY30_06525 PF07745 Glycosyl hydrolase family 53 APY30_06535 PF01381 Helix-turn-helix APY30_06535 PF09856 Predicted transcriptional regulator (DUF2083) APY30_06535 PF06114 IrrE N-terminal-like domain APY30_06540 PF00171 Aldehyde dehydrogenase family APY30_06545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY30_06545 PF02770 Acyl-CoA dehydrogenase, middle domain APY30_06545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_06550 PF00378 Enoyl-CoA hydratase/isomerase APY30_06555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY30_06555 PF00378 Enoyl-CoA hydratase/isomerase APY30_06555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY30_06560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY30_06560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APY30_06565 PF01545 Cation efflux family APY30_06570 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY30_06570 PF00378 Enoyl-CoA hydratase/isomerase APY30_06570 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY30_06575 PF08281 Sigma-70, region 4 APY30_06575 PF04542 Sigma-70 region 2 APY30_06585 PF13180 PDZ domain APY30_06590 PF03144 Elongation factor Tu domain 2 APY30_06590 PF06421 GTP-binding protein LepA C-terminus APY30_06590 PF00679 Elongation factor G C-terminus APY30_06590 PF00009 Elongation factor Tu GTP binding domain APY30_06595 PF10502 Signal peptidase, peptidase S26 APY30_06605 PF00035 Double-stranded RNA binding motif APY30_06605 PF14622 Ribonuclease-III-like APY30_06610 PF07650 KH domain APY30_06610 PF01926 50S ribosome-binding GTPase APY30_06615 PF02565 Recombination protein O C terminal APY30_06615 PF11967 Recombination protein O N terminal APY30_06625 PF05958 tRNA (Uracil-5-)-methyltransferase APY30_06635 PF01323 DSBA-like thioredoxin domain APY30_06640 PF01593 Flavin containing amine oxidoreductase APY30_06645 PF04244 Deoxyribodipyrimidine photo-lyase-related protein APY30_06650 PF00933 Glycosyl hydrolase family 3 N terminal domain APY30_06665 PF00313 'Cold-shock' DNA-binding domain APY30_06670 PF01494 FAD binding domain APY30_06680 PF00270 DEAD/DEAH box helicase APY30_06680 PF00271 Helicase conserved C-terminal domain APY30_06680 PF08494 DEAD/H associated APY30_06685 PF04675 DNA ligase N terminus APY30_06685 PF04679 ATP dependent DNA ligase C terminal region APY30_06685 PF01068 ATP dependent DNA ligase domain APY30_06695 PF04679 ATP dependent DNA ligase C terminal region APY30_06695 PF04675 DNA ligase N terminus APY30_06695 PF01068 ATP dependent DNA ligase domain APY30_06710 PF00990 Diguanylate cyclase, GGDEF domain APY30_06710 PF00072 Response regulator receiver domain APY30_06725 PF02803 Thiolase, C-terminal domain APY30_06725 PF00108 Thiolase, N-terminal domain APY30_06730 PF03797 Autotransporter beta-domain APY30_06730 PF12951 Passenger-associated-transport-repeat APY30_06730 PF00082 Subtilase family APY30_06735 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APY30_06735 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APY30_06745 PF01863 Protein of unknown function DUF45 APY30_06750 PF07043 Protein of unknown function (DUF1328) APY30_06760 PF01258 Prokaryotic dksA/traR C4-type zinc finger APY30_06785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY30_06795 PF03831 PhnA domain APY30_06795 PF08274 PhnA Zinc-Ribbon APY30_06805 PF07690 Major Facilitator Superfamily APY30_06840 PF03706 Lysylphosphatidylglycerol synthase TM region APY30_06840 PF09924 Uncharacterised conserved protein (DUF2156) APY30_06850 PF01042 Endoribonuclease L-PSP APY30_06895 PF04545 Sigma-70, region 4 APY30_06895 PF04542 Sigma-70 region 2 APY30_06915 PF04060 Putative Fe-S cluster APY30_06925 PF01588 Putative tRNA binding domain APY30_06925 PF09334 tRNA synthetases class I (M) APY30_06940 PF00005 ABC transporter APY30_06940 PF13732 Domain of unknown function (DUF4162) APY30_06945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY30_06950 PF00324 Amino acid permease APY30_06955 PF02574 Homocysteine S-methyltransferase APY30_06965 PF02592 Putative vitamin uptake transporter APY30_06985 PF03551 Transcriptional regulator PadR-like family APY30_07020 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APY30_07025 PF07733 Bacterial DNA polymerase III alpha NTPase domain APY30_07025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APY30_07025 PF14579 Helix-hairpin-helix motif APY30_07025 PF02811 PHP domain APY30_07025 PF01336 OB-fold nucleic acid binding domain APY30_07030 PF01351 Ribonuclease HII APY30_07035 PF02684 Lipid-A-disaccharide synthetase APY30_07040 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APY30_07040 PF00132 Bacterial transferase hexapeptide (six repeats) APY30_07045 PF07977 FabA-like domain APY30_07050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APY30_07050 PF00132 Bacterial transferase hexapeptide (six repeats) APY30_07060 PF01103 Surface antigen APY30_07060 PF07244 Surface antigen variable number repeat APY30_07065 PF17820 PDZ domain APY30_07065 PF02163 Peptidase family M50 APY30_07070 PF13288 DXP reductoisomerase C-terminal domain APY30_07070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APY30_07070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APY30_07080 PF01255 Putative undecaprenyl diphosphate synthase APY30_07085 PF01765 Ribosome recycling factor APY30_07090 PF00696 Amino acid kinase family APY30_07095 PF00990 Diguanylate cyclase, GGDEF domain APY30_07095 PF00072 Response regulator receiver domain APY30_07100 PF00889 Elongation factor TS APY30_07105 PF00318 Ribosomal protein S2 APY30_07140 PF00557 Metallopeptidase family M24 APY30_07145 PF01909 Nucleotidyltransferase domain APY30_07145 PF01966 HD domain APY30_07145 PF08335 GlnD PII-uridylyltransferase APY30_07150 PF00132 Bacterial transferase hexapeptide (six repeats) APY30_07150 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APY30_07150 PF14602 Hexapeptide repeat of succinyl-transferase APY30_07155 PF03960 ArsC family APY30_07160 PF07687 Peptidase dimerisation domain APY30_07160 PF01546 Peptidase family M20/M25/M40 APY30_07165 PF00733 Asparagine synthase APY30_07165 PF13537 Glutamine amidotransferase domain APY30_07175 PF00593 TonB dependent receptor APY30_07175 PF07715 TonB-dependent Receptor Plug Domain APY30_07185 PF00210 Ferritin-like domain APY30_07190 PF05724 Thiopurine S-methyltransferase (TPMT) APY30_07195 PF00521 DNA gyrase/topoisomerase IV, subunit A APY30_07195 PF03989 DNA gyrase C-terminal domain, beta-propeller APY30_07210 PF02321 Outer membrane efflux protein APY30_07215 PF00529 HlyD membrane-fusion protein of T1SS APY30_07215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_07220 PF07690 Major Facilitator Superfamily APY30_07230 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY30_07230 PF14310 Fibronectin type III-like domain APY30_07230 PF00933 Glycosyl hydrolase family 3 N terminal domain APY30_07240 PF00854 POT family APY30_07265 PF12802 MarR family APY30_07270 PF01432 Peptidase family M3 APY30_07275 PF00255 Glutathione peroxidase APY30_07280 PF00970 Oxidoreductase FAD-binding domain APY30_07280 PF00175 Oxidoreductase NAD-binding domain APY30_07285 PF00005 ABC transporter APY30_07290 PF05683 Fumarase C-terminus APY30_07290 PF05681 Fumarate hydratase (Fumerase) APY30_07305 PF00484 Carbonic anhydrase APY30_07320 PF00313 'Cold-shock' DNA-binding domain APY30_07335 PF00899 ThiF family APY30_07340 PF01026 TatD related DNase APY30_07355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY30_07355 PF02770 Acyl-CoA dehydrogenase, middle domain APY30_07355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_07365 PF02798 Glutathione S-transferase, N-terminal domain APY30_07365 PF00043 Glutathione S-transferase, C-terminal domain APY30_07375 PF13537 Glutamine amidotransferase domain APY30_07375 PF00733 Asparagine synthase APY30_07380 PF03358 NADPH-dependent FMN reductase APY30_07385 PF00772 DnaB-like helicase N terminal domain APY30_07385 PF03796 DnaB-like helicase C terminal domain APY30_07390 PF03441 FAD binding domain of DNA photolyase APY30_07390 PF00875 DNA photolyase APY30_07395 PF00691 OmpA family APY30_07395 PF05736 OprF membrane domain APY30_07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_07400 PF03466 LysR substrate binding domain APY30_07415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_07420 PF00873 AcrB/AcrD/AcrF family APY30_07425 PF00106 short chain dehydrogenase APY30_07430 PF02321 Outer membrane efflux protein APY30_07435 PF08448 PAS fold APY30_07435 PF00990 Diguanylate cyclase, GGDEF domain APY30_07445 PF00990 Diguanylate cyclase, GGDEF domain APY30_07460 PF00665 Integrase core domain APY30_07460 PF13276 HTH-like domain APY30_07460 PF13333 Integrase core domain APY30_07470 PF00005 ABC transporter APY30_07470 PF00664 ABC transporter transmembrane region APY30_07470 PF03412 Peptidase C39 family APY30_07495 PF00082 Subtilase family APY30_07500 PF01668 SmpB protein APY30_07505 PF03364 Polyketide cyclase / dehydrase and lipid transport APY30_07510 PF03658 RnfH family Ubiquitin APY30_07515 PF04355 SmpA / OmlA family APY30_07520 PF01475 Ferric uptake regulator family APY30_07525 PF02463 RecF/RecN/SMC N terminal domain APY30_07530 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APY30_07530 PF01628 HrcA protein C terminal domain APY30_07535 PF01025 GrpE APY30_07540 PF00012 Hsp70 protein APY30_07545 PF01556 DnaJ C terminal domain APY30_07545 PF00226 DnaJ domain APY30_07545 PF00684 DnaJ central domain APY30_07550 PF08543 Phosphomethylpyrimidine kinase APY30_07575 PF03412 Peptidase C39 family APY30_07575 PF00664 ABC transporter transmembrane region APY30_07575 PF00005 ABC transporter APY30_07580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_07580 PF03466 LysR substrate binding domain APY30_07585 PF00005 ABC transporter APY30_07585 PF00664 ABC transporter transmembrane region APY30_07590 PF01205 Uncharacterized protein family UPF0029 APY30_07595 PF03641 Possible lysine decarboxylase APY30_07600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY30_07600 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_07605 PF02817 e3 binding domain APY30_07605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY30_07605 PF00364 Biotin-requiring enzyme APY30_07610 PF00676 Dehydrogenase E1 component APY30_07610 PF02779 Transketolase, pyrimidine binding domain APY30_07610 PF16078 2-oxoglutarate dehydrogenase N-terminus APY30_07610 PF16870 2-oxoglutarate dehydrogenase C-terminal APY30_07620 PF08007 Cupin superfamily protein APY30_07630 PF00206 Lyase APY30_07630 PF08328 Adenylosuccinate lyase C-terminal APY30_07640 PF03471 Transporter associated domain APY30_07640 PF01595 Cyclin M transmembrane N-terminal domain APY30_07640 PF00571 CBS domain APY30_07645 PF00206 Lyase APY30_07645 PF10415 Fumarase C C-terminus APY30_07670 PF00005 ABC transporter APY30_07675 PF00392 Bacterial regulatory proteins, gntR family APY30_07680 PF00255 Glutathione peroxidase APY30_07685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY30_07685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APY30_07690 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY30_07690 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY30_07690 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY30_07695 PF04102 SlyX APY30_07710 PF00356 Bacterial regulatory proteins, lacI family APY30_07715 PF07690 Major Facilitator Superfamily APY30_07720 PF00294 pfkB family carbohydrate kinase APY30_07730 PF02965 Vitamin B12 dependent methionine synthase, activation domain APY30_07730 PF02310 B12 binding domain APY30_07730 PF00809 Pterin binding enzyme APY30_07730 PF02574 Homocysteine S-methyltransferase APY30_07730 PF02607 B12 binding domain APY30_07735 PF00809 Pterin binding enzyme APY30_07735 PF02574 Homocysteine S-methyltransferase APY30_07740 PF01209 ubiE/COQ5 methyltransferase family APY30_07745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_07745 PF02770 Acyl-CoA dehydrogenase, middle domain APY30_07745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY30_07760 PF00575 S1 RNA binding domain APY30_07760 PF00773 RNB domain APY30_07760 PF08206 Ribonuclease B OB domain APY30_07760 PF17876 Cold shock domain APY30_07760 PF08461 Ribonuclease R winged-helix domain APY30_07770 PF08032 RNA 2'-O ribose methyltransferase substrate binding APY30_07770 PF00588 SpoU rRNA Methylase family APY30_07775 PF00990 Diguanylate cyclase, GGDEF domain APY30_07775 PF07694 5TMR of 5TMR-LYT APY30_07780 PF00929 Exonuclease APY30_07790 PF01895 PhoU domain APY30_07795 PF00005 ABC transporter APY30_07800 PF00528 Binding-protein-dependent transport system inner membrane component APY30_07805 PF00528 Binding-protein-dependent transport system inner membrane component APY30_07810 PF12849 PBP superfamily domain APY30_07815 PF12849 PBP superfamily domain APY30_07830 PF00484 Carbonic anhydrase APY30_07835 PF01740 STAS domain APY30_07835 PF00916 Sulfate permease family APY30_07840 PF00730 HhH-GPD superfamily base excision DNA repair protein APY30_07840 PF00633 Helix-hairpin-helix motif APY30_07840 PF10576 Iron-sulfur binding domain of endonuclease III APY30_07850 PF00378 Enoyl-CoA hydratase/isomerase APY30_07855 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APY30_07855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY30_07860 PF00293 NUDIX domain APY30_07865 PF00581 Rhodanese-like domain APY30_07900 PF01170 Putative RNA methylase family UPF0020 APY30_07900 PF10672 S-adenosylmethionine-dependent methyltransferase APY30_07900 PF02926 THUMP domain APY30_07905 PF01513 ATP-NAD kinase APY30_07930 PF00929 Exonuclease APY30_07930 PF08411 Exonuclease C-terminal APY30_07935 PF01494 FAD binding domain APY30_07940 PF00266 Aminotransferase class-V APY30_07950 PF06052 3-hydroxyanthranilic acid dioxygenase APY30_07955 PF00484 Carbonic anhydrase APY30_08000 PF00072 Response regulator receiver domain APY30_08000 PF00196 Bacterial regulatory proteins, luxR family APY30_08025 PF04299 Putative FMN-binding domain APY30_08040 PF01336 OB-fold nucleic acid binding domain APY30_08040 PF00152 tRNA synthetases class II (D, K and N) APY30_08045 PF01521 Iron-sulphur cluster biosynthesis APY30_08050 PF01250 Ribosomal protein S6 APY30_08055 PF01084 Ribosomal protein S18 APY30_08060 PF03948 Ribosomal protein L9, C-terminal domain APY30_08060 PF01281 Ribosomal protein L9, N-terminal domain APY30_08065 PF02463 RecF/RecN/SMC N terminal domain APY30_08070 PF04354 ZipA, C-terminal FtsZ-binding domain APY30_08085 PF00155 Aminotransferase class I and II APY30_08090 PF01653 NAD-dependent DNA ligase adenylation domain APY30_08090 PF03120 NAD-dependent DNA ligase OB-fold domain APY30_08090 PF12826 Helix-hairpin-helix motif APY30_08090 PF00533 BRCA1 C Terminus (BRCT) domain APY30_08090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APY30_08095 PF00152 tRNA synthetases class II (D, K and N) APY30_08105 PF01008 Initiation factor 2 subunit family APY30_08110 PF00521 DNA gyrase/topoisomerase IV, subunit A APY30_08110 PF03989 DNA gyrase C-terminal domain, beta-propeller APY30_08115 PF13360 PQQ-like domain APY30_08125 PF17392 Urocanase C-terminal domain APY30_08125 PF01175 Urocanase Rossmann-like domain APY30_08125 PF17391 Urocanase N-terminal domain APY30_08135 PF00221 Aromatic amino acid lyase APY30_08140 PF07969 Amidohydrolase family APY30_08155 PF00392 Bacterial regulatory proteins, gntR family APY30_08155 PF07702 UTRA domain APY30_08180 PF01794 Ferric reductase like transmembrane component APY30_08185 PF00174 Oxidoreductase molybdopterin binding domain APY30_08190 PF00266 Aminotransferase class-V APY30_08195 PF01817 Chorismate mutase type II APY30_08195 PF00800 Prephenate dehydratase APY30_08195 PF01842 ACT domain APY30_08200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APY30_08210 PF03544 Gram-negative bacterial TonB protein C-terminal APY30_08215 PF02403 Seryl-tRNA synthetase N-terminal domain APY30_08215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY30_08220 PF02525 Flavodoxin-like fold APY30_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_08225 PF03466 LysR substrate binding domain APY30_08240 PF02203 Tar ligand binding domain homologue APY30_08240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_08240 PF00672 HAMP domain APY30_08245 PF01494 FAD binding domain APY30_08270 PF00672 HAMP domain APY30_08270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY30_08270 PF00072 Response regulator receiver domain APY30_08270 PF01627 Hpt domain APY30_08270 PF00512 His Kinase A (phospho-acceptor) domain APY30_08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_08280 PF00072 Response regulator receiver domain APY30_08280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_08280 PF13426 PAS domain APY30_08290 PF03918 Cytochrome C biogenesis protein APY30_08295 PF08534 Redoxin APY30_08300 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APY30_08300 PF01578 Cytochrome C assembly protein APY30_08305 PF03100 CcmE APY30_08315 PF01578 Cytochrome C assembly protein APY30_08320 PF00082 Subtilase family APY30_08330 PF04542 Sigma-70 region 2 APY30_08330 PF08281 Sigma-70, region 4 APY30_08355 PF00665 Integrase core domain APY30_08355 PF13333 Integrase core domain APY30_08355 PF13276 HTH-like domain APY30_08365 PF01526 Tn3 transposase DDE domain APY30_08365 PF13700 Domain of unknown function (DUF4158) APY30_08370 PF13406 Transglycosylase SLT domain APY30_08400 PF00034 Cytochrome c APY30_08415 PF05523 WxcM-like, C-terminal APY30_08435 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APY30_08440 PF01943 Polysaccharide biosynthesis protein APY30_08445 PF00535 Glycosyl transferase family 2 APY30_08460 PF08241 Methyltransferase domain APY30_08495 PF00005 ABC transporter APY30_08500 PF00664 ABC transporter transmembrane region APY30_08500 PF00005 ABC transporter APY30_08505 PF07690 Major Facilitator Superfamily APY30_08510 PF00296 Luciferase-like monooxygenase APY30_08525 PF00571 CBS domain APY30_08525 PF01595 Cyclin M transmembrane N-terminal domain APY30_08525 PF03471 Transporter associated domain APY30_08535 PF01384 Phosphate transporter family APY30_08550 PF00204 DNA gyrase B APY30_08550 PF00986 DNA gyrase B subunit, carboxyl terminus APY30_08550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_08550 PF01751 Toprim domain APY30_08560 PF06418 CTP synthase N-terminus APY30_08560 PF00117 Glutamine amidotransferase class-I APY30_08565 PF00793 DAHP synthetase I family APY30_08575 PF00113 Enolase, C-terminal TIM barrel domain APY30_08575 PF03952 Enolase, N-terminal domain APY30_08580 PF04977 Septum formation initiator APY30_08585 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APY30_08590 PF02542 YgbB family APY30_08595 PF01142 tRNA pseudouridine synthase D (TruD) APY30_08600 PF01713 Smr domain APY30_08605 PF01975 Survival protein SurE APY30_08615 PF09335 SNARE associated Golgi protein APY30_08620 PF01551 Peptidase family M23 APY30_08620 PF01476 LysM domain APY30_08625 PF04430 Protein of unknown function (DUF498/DUF598) APY30_08630 PF01985 CRS1 / YhbY (CRM) domain APY30_08635 PF01728 FtsJ-like methyltransferase APY30_08640 PF00004 ATPase family associated with various cellular activities (AAA) APY30_08640 PF01434 Peptidase family M41 APY30_08640 PF06480 FtsH Extracellular APY30_08640 PF17862 AAA+ lid domain APY30_08645 PF00809 Pterin binding enzyme APY30_08655 PF17209 Hfq protein APY30_08660 PF01926 50S ribosome-binding GTPase APY30_08660 PF13167 GTP-binding GTPase N-terminal APY30_08660 PF16360 GTP-binding GTPase Middle Region APY30_08665 PF02464 Competence-damaged protein APY30_08670 PF03109 ABC1 family APY30_08675 PF00717 Peptidase S24-like APY30_08675 PF01726 LexA DNA binding domain APY30_08680 PF00154 recA bacterial DNA recombination protein APY30_08685 PF02631 RecX family APY30_08690 PF01411 tRNA synthetases class II (A) APY30_08690 PF02272 DHHA1 domain APY30_08690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APY30_08695 PF02599 Global regulator protein family APY30_08705 PF08447 PAS fold APY30_08705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_08705 PF13426 PAS domain APY30_08710 PF02678 Pirin APY30_08710 PF17954 Quercetinase C-terminal cupin domain APY30_08720 PF03466 LysR substrate binding domain APY30_08720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_08745 PF08543 Phosphomethylpyrimidine kinase APY30_08760 PF13638 PIN domain APY30_08760 PF02562 PhoH-like protein APY30_08765 PF00578 AhpC/TSA family APY30_08780 PF00701 Dihydrodipicolinate synthetase family APY30_08790 PF11953 Domain of unknown function (DUF3470) APY30_08790 PF00037 4Fe-4S binding domain APY30_08795 PF05035 2-keto-3-deoxy-galactonokinase APY30_08800 PF08450 SMP-30/Gluconolactonase/LRE-like region APY30_08805 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY30_08805 PF13378 Enolase C-terminal domain-like APY30_08810 PF01081 KDPG and KHG aldolase APY30_08825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_08825 PF03466 LysR substrate binding domain APY30_08840 PF03442 Carbohydrate binding domain X2 APY30_08840 PF00942 Cellulose binding domain APY30_08855 PF17137 Domain of unknown function (DUF5110) APY30_08855 PF16338 Domain of unknown function (DUF4968) APY30_08855 PF01055 Glycosyl hydrolases family 31 APY30_08865 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY30_08865 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY30_08875 PF00083 Sugar (and other) transporter APY30_08890 PF01520 N-acetylmuramoyl-L-alanine amidase APY30_08895 PF02649 Type I GTP cyclohydrolase folE2 APY30_08905 PF01743 Poly A polymerase head domain APY30_08905 PF12627 Probable RNA and SrmB- binding site of polymerase A APY30_08905 PF12626 Polymerase A arginine-rich C-terminus APY30_08910 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APY30_08915 PF02548 Ketopantoate hydroxymethyltransferase APY30_08920 PF02569 Pantoate-beta-alanine ligase APY30_08925 PF02261 Aspartate decarboxylase APY30_08930 PF00342 Phosphoglucose isomerase APY30_08950 PF14310 Fibronectin type III-like domain APY30_08950 PF00933 Glycosyl hydrolase family 3 N terminal domain APY30_08950 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY30_08955 PF00474 Sodium:solute symporter family APY30_08960 PF00990 Diguanylate cyclase, GGDEF domain APY30_08960 PF00360 Phytochrome region APY30_08960 PF01590 GAF domain APY30_08960 PF00563 EAL domain APY30_08965 PF02013 Cellulose or protein binding domain APY30_08965 PF00150 Cellulase (glycosyl hydrolase family 5) APY30_08970 PF00072 Response regulator receiver domain APY30_08980 PF04551 GcpE protein APY30_08985 PF01569 PAP2 superfamily APY30_08990 PF07690 Major Facilitator Superfamily APY30_08995 PF01177 Asp/Glu/Hydantoin racemase APY30_09000 PF00892 EamA-like transporter family APY30_09005 PF01565 FAD binding domain APY30_09005 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APY30_09010 PF01180 Dihydroorotate dehydrogenase APY30_09025 PF00171 Aldehyde dehydrogenase family APY30_09040 PF00535 Glycosyl transferase family 2 APY30_09045 PF14883 Hypothetical glycosyl hydrolase family 13 APY30_09045 PF01522 Polysaccharide deacetylase APY30_09055 PF17287 POTRA domain APY30_09055 PF08479 POTRA domain, ShlB-type APY30_09055 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APY30_09075 PF03447 Homoserine dehydrogenase, NAD binding domain APY30_09075 PF00742 Homoserine dehydrogenase APY30_09075 PF13840 ACT domain APY30_09075 PF01842 ACT domain APY30_09075 PF00696 Amino acid kinase family APY30_09080 PF00288 GHMP kinases N terminal domain APY30_09080 PF08544 GHMP kinases C terminal APY30_09090 PF00291 Pyridoxal-phosphate dependent enzyme APY30_09090 PF14821 Threonine synthase N terminus APY30_09100 PF13545 Crp-like helix-turn-helix domain APY30_09100 PF00027 Cyclic nucleotide-binding domain APY30_09105 PF03129 Anticodon binding domain APY30_09105 PF13393 Histidyl-tRNA synthetase APY30_09115 PF08029 HisG, C-terminal domain APY30_09115 PF01634 ATP phosphoribosyltransferase APY30_09120 PF00815 Histidinol dehydrogenase APY30_09125 PF00155 Aminotransferase class I and II APY30_09130 PF00475 Imidazoleglycerol-phosphate dehydratase APY30_09135 PF00117 Glutamine amidotransferase class-I APY30_09140 PF00977 Histidine biosynthesis protein APY30_09145 PF00977 Histidine biosynthesis protein APY30_09150 PF01502 Phosphoribosyl-AMP cyclohydrolase APY30_09150 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APY30_09170 PF03079 ARD/ARD' family APY30_09175 PF00596 Class II Aldolase and Adducin N-terminal domain APY30_09180 PF13520 Amino acid permease APY30_09185 PF13520 Amino acid permease APY30_09195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APY30_09195 PF01842 ACT domain APY30_09195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APY30_09200 PF02913 FAD linked oxidases, C-terminal domain APY30_09200 PF01565 FAD binding domain APY30_09220 PF09285 Elongation factor P, C-terminal APY30_09220 PF01132 Elongation factor P (EF-P) OB domain APY30_09220 PF08207 Elongation factor P (EF-P) KOW-like domain APY30_09225 PF00106 short chain dehydrogenase APY30_09230 PF00682 HMGL-like APY30_09240 PF00378 Enoyl-CoA hydratase/isomerase APY30_09250 PF07664 Ferrous iron transport protein B C terminus APY30_09250 PF02421 Ferrous iron transport protein B APY30_09250 PF07670 Nucleoside recognition APY30_09265 PF00155 Aminotransferase class I and II APY30_09270 PF03473 MOSC domain APY30_09270 PF03475 3-alpha domain APY30_09275 PF01113 Dihydrodipicolinate reductase, N-terminus APY30_09275 PF05173 Dihydrodipicolinate reductase, C-terminus APY30_09280 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APY30_09280 PF00117 Glutamine amidotransferase class-I APY30_09290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY30_09290 PF02142 MGS-like domain APY30_09290 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APY30_09295 PF01272 Transcription elongation factor, GreA/GreB, C-term APY30_09295 PF03449 Transcription elongation factor, N-terminal APY30_09305 PF17768 RecJ OB domain APY30_09305 PF01368 DHH family APY30_09305 PF02272 DHHA1 domain APY30_09340 PF01527 Transposase APY30_09345 PF13276 HTH-like domain APY30_09345 PF13683 Integrase core domain APY30_09350 PF00072 Response regulator receiver domain APY30_09350 PF04397 LytTr DNA-binding domain APY30_09355 PF00472 RF-1 domain APY30_09355 PF03462 PCRF domain APY30_09360 PF00152 tRNA synthetases class II (D, K and N) APY30_09360 PF01336 OB-fold nucleic acid binding domain APY30_09365 PF00072 Response regulator receiver domain APY30_09370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_09370 PF01627 Hpt domain APY30_09370 PF00512 His Kinase A (phospho-acceptor) domain APY30_09370 PF00072 Response regulator receiver domain APY30_09375 PF00378 Enoyl-CoA hydratase/isomerase APY30_09380 PF13193 AMP-binding enzyme C-terminal domain APY30_09380 PF00501 AMP-binding enzyme APY30_09390 PF00694 Aconitase C-terminal domain APY30_09390 PF00330 Aconitase family (aconitate hydratase) APY30_09405 PF06434 Aconitate hydratase 2 N-terminus APY30_09405 PF00330 Aconitase family (aconitate hydratase) APY30_09405 PF11791 Aconitate B N-terminal domain APY30_09410 PF00561 alpha/beta hydrolase fold APY30_09415 PF00990 Diguanylate cyclase, GGDEF domain APY30_09415 PF00563 EAL domain APY30_09415 PF03707 Bacterial signalling protein N terminal repeat APY30_09420 PF00072 Response regulator receiver domain APY30_09420 PF01339 CheB methylesterase APY30_09425 PF03975 CheD chemotactic sensory transduction APY30_09430 PF01739 CheR methyltransferase, SAM binding domain APY30_09430 PF03705 CheR methyltransferase, all-alpha domain APY30_09435 PF00672 HAMP domain APY30_09435 PF02203 Tar ligand binding domain homologue APY30_09435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09445 PF01584 CheW-like domain APY30_09450 PF07317 Flagellar regulator YcgR APY30_09450 PF07238 PilZ domain APY30_09455 PF02203 Tar ligand binding domain homologue APY30_09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09455 PF00672 HAMP domain APY30_09460 PF00672 HAMP domain APY30_09460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09460 PF02203 Tar ligand binding domain homologue APY30_09465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09465 PF00672 HAMP domain APY30_09465 PF02203 Tar ligand binding domain homologue APY30_09470 PF00672 HAMP domain APY30_09470 PF02203 Tar ligand binding domain homologue APY30_09470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09495 PF02203 Tar ligand binding domain homologue APY30_09495 PF00672 HAMP domain APY30_09495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09500 PF00672 HAMP domain APY30_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09505 PF02203 Tar ligand binding domain homologue APY30_09505 PF00672 HAMP domain APY30_09505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09515 PF02203 Tar ligand binding domain homologue APY30_09515 PF00672 HAMP domain APY30_09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09520 PF17200 Single Cache domain 2 APY30_09520 PF00672 HAMP domain APY30_09520 PF00672 HAMP domain APY30_09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09520 PF17200 Single Cache domain 2 APY30_09530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_09530 PF00672 HAMP domain APY30_09530 PF02203 Tar ligand binding domain homologue APY30_09535 PF09078 CheY binding APY30_09535 PF01627 Hpt domain APY30_09535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_09535 PF01584 CheW-like domain APY30_09535 PF02895 Signal transducing histidine kinase, homodimeric domain APY30_09540 PF00072 Response regulator receiver domain APY30_09550 PF01584 CheW-like domain APY30_09555 PF13614 AAA domain APY30_09560 PF00691 OmpA family APY30_09560 PF13677 Membrane MotB of proton-channel complex MotA/MotB APY30_09565 PF01618 MotA/TolQ/ExbB proton channel family APY30_09580 PF13276 HTH-like domain APY30_09580 PF13683 Integrase core domain APY30_09625 PF13276 HTH-like domain APY30_09625 PF13683 Integrase core domain APY30_09630 PF01527 Transposase APY30_09635 PF13276 HTH-like domain APY30_09635 PF00665 Integrase core domain APY30_09635 PF13333 Integrase core domain APY30_09650 PF02895 Signal transducing histidine kinase, homodimeric domain APY30_09650 PF07194 P2 response regulator binding domain APY30_09650 PF01627 Hpt domain APY30_09650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_09650 PF01584 CheW-like domain APY30_09655 PF04344 Chemotaxis phosphatase, CheZ APY30_09660 PF00072 Response regulator receiver domain APY30_09670 PF10609 NUBPL iron-transfer P-loop NTPase APY30_09675 PF00448 SRP54-type protein, GTPase domain APY30_09680 PF00771 FHIPEP family APY30_09685 PF01312 FlhB HrpN YscU SpaS Family APY30_09690 PF00990 Diguanylate cyclase, GGDEF domain APY30_09690 PF03707 Bacterial signalling protein N terminal repeat APY30_09690 PF00563 EAL domain APY30_09695 PF13188 PAS domain APY30_09695 PF03707 Bacterial signalling protein N terminal repeat APY30_09695 PF00563 EAL domain APY30_09695 PF00990 Diguanylate cyclase, GGDEF domain APY30_09705 PF00990 Diguanylate cyclase, GGDEF domain APY30_09705 PF13188 PAS domain APY30_09705 PF00563 EAL domain APY30_09705 PF03707 Bacterial signalling protein N terminal repeat APY30_09710 PF01311 Bacterial export proteins, family 1 APY30_09715 PF01313 Bacterial export proteins, family 3 APY30_09720 PF00813 FliP family APY30_09725 PF04347 Flagellar biosynthesis protein, FliO APY30_09730 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APY30_09735 PF02154 Flagellar motor switch protein FliM APY30_09735 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term APY30_09755 PF18269 T3SS EscN ATPase C-terminal domain APY30_09755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY30_09765 PF01706 FliG C-terminal domain APY30_09765 PF14841 FliG middle domain APY30_09765 PF14842 FliG N-terminal domain APY30_09770 PF01514 Secretory protein of YscJ/FliF family APY30_09770 PF08345 Flagellar M-ring protein C-terminal APY30_09775 PF02049 Flagellar hook-basal body complex protein FliE APY30_09780 PF00534 Glycosyl transferases group 1 APY30_09780 PF00535 Glycosyl transferase family 2 APY30_09785 PF13276 HTH-like domain APY30_09785 PF13683 Integrase core domain APY30_09835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY30_09835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY30_09845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APY30_09850 PF00158 Sigma-54 interaction domain APY30_09850 PF00072 Response regulator receiver domain APY30_09850 PF02954 Bacterial regulatory protein, Fis family APY30_09855 PF00072 Response regulator receiver domain APY30_09855 PF01339 CheB methylesterase APY30_09860 PF04552 Sigma-54, DNA binding domain APY30_09860 PF00309 Sigma-54 factor, Activator interacting domain (AID) APY30_09860 PF04963 Sigma-54 factor, core binding domain APY30_09865 PF00196 Bacterial regulatory proteins, luxR family APY30_09865 PF00072 Response regulator receiver domain APY30_09880 PF02561 Flagellar protein FliS APY30_09885 PF02465 Flagellar hook-associated protein 2 N-terminus APY30_09885 PF07195 Flagellar hook-associated protein 2 C-terminus APY30_09885 PF07196 Flagellin hook IN motif APY30_09890 PF00700 Bacterial flagellin C-terminal helical region APY30_09890 PF00669 Bacterial flagellin N-terminal helical region APY30_09895 PF00700 Bacterial flagellin C-terminal helical region APY30_09895 PF00669 Bacterial flagellin N-terminal helical region APY30_09900 PF07196 Flagellin hook IN motif APY30_09900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY30_09905 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APY30_09905 PF10135 Rod binding protein APY30_09910 PF02119 Flagellar P-ring protein APY30_09915 PF02107 Flagellar L-ring protein APY30_09920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY30_09920 PF00460 Flagella basal body rod protein APY30_09925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY30_09925 PF00460 Flagella basal body rod protein APY30_09930 PF07559 Flagellar basal body protein FlaE APY30_09930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY30_09930 PF00460 Flagella basal body rod protein APY30_09935 PF03963 Flagellar hook capping protein - N-terminal region APY30_09940 PF00460 Flagella basal body rod protein APY30_09940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APY30_09945 PF00460 Flagella basal body rod protein APY30_09950 PF00072 Response regulator receiver domain APY30_09950 PF01584 CheW-like domain APY30_09970 PF13426 PAS domain APY30_09970 PF00512 His Kinase A (phospho-acceptor) domain APY30_09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_09970 PF13188 PAS domain APY30_09970 PF00989 PAS fold APY30_09975 PF00990 Diguanylate cyclase, GGDEF domain APY30_09975 PF03707 Bacterial signalling protein N terminal repeat APY30_09975 PF00563 EAL domain APY30_09980 PF07730 Histidine kinase APY30_09980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_09985 PF00563 EAL domain APY30_09985 PF03707 Bacterial signalling protein N terminal repeat APY30_09985 PF00990 Diguanylate cyclase, GGDEF domain APY30_09995 PF12729 Four helix bundle sensory module for signal transduction APY30_09995 PF00672 HAMP domain APY30_09995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_10000 PF04356 Protein of unknown function (DUF489) APY30_10010 PF00293 NUDIX domain APY30_10015 PF02617 ATP-dependent Clp protease adaptor protein ClpS APY30_10020 PF00004 ATPase family associated with various cellular activities (AAA) APY30_10020 PF10431 C-terminal, D2-small domain, of ClpB protein APY30_10020 PF17871 AAA lid domain APY30_10020 PF02861 Clp amino terminal domain, pathogenicity island component APY30_10020 PF07724 AAA domain (Cdc48 subfamily) APY30_10025 PF01176 Translation initiation factor 1A / IF-1 APY30_10030 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APY30_10040 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_10045 PF09397 Ftsk gamma domain APY30_10045 PF17854 FtsK alpha domain APY30_10045 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APY30_10045 PF01580 FtsK/SpoIIIE family APY30_10055 PF03548 Outer membrane lipoprotein carrier protein LolA APY30_10065 PF00004 ATPase family associated with various cellular activities (AAA) APY30_10065 PF12002 MgsA AAA+ ATPase C terminal APY30_10065 PF16193 AAA C-terminal domain APY30_10070 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APY30_10075 PF02803 Thiolase, C-terminal domain APY30_10075 PF00108 Thiolase, N-terminal domain APY30_10080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APY30_10080 PF00378 Enoyl-CoA hydratase/isomerase APY30_10080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APY30_10090 PF00334 Nucleoside diphosphate kinase APY30_10095 PF04055 Radical SAM superfamily APY30_10105 PF13464 Domain of unknown function (DUF4115) APY30_10115 PF13360 PQQ-like domain APY30_10115 PF01011 PQQ enzyme repeat APY30_10120 PF01926 50S ribosome-binding GTPase APY30_10120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APY30_10125 PF00994 Probable molybdopterin binding domain APY30_10125 PF03454 MoeA C-terminal region (domain IV) APY30_10125 PF03453 MoeA N-terminal region (domain I and II) APY30_10130 PF00899 ThiF family APY30_10170 PF00107 Zinc-binding dehydrogenase APY30_10170 PF13823 Alcohol dehydrogenase GroES-associated APY30_10170 PF08240 Alcohol dehydrogenase GroES-like domain APY30_10220 PF00145 C-5 cytosine-specific DNA methylase APY30_10260 PF09571 XcyI restriction endonuclease APY30_10265 PF01555 DNA methylase APY30_10270 PF00239 Resolvase, N terminal domain APY30_10270 PF02796 Helix-turn-helix domain of resolvase APY30_10280 PF01381 Helix-turn-helix APY30_10290 PF13276 HTH-like domain APY30_10290 PF00665 Integrase core domain APY30_10290 PF13333 Integrase core domain APY30_10295 PF01527 Transposase APY30_10300 PF03377 TAL effector repeat APY30_10305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APY30_10345 PF01526 Tn3 transposase DDE domain APY30_10345 PF13700 Domain of unknown function (DUF4158) APY30_10400 PF13683 Integrase core domain APY30_10400 PF13276 HTH-like domain APY30_10405 PF01527 Transposase APY30_10420 PF13276 HTH-like domain APY30_10420 PF00665 Integrase core domain APY30_10420 PF13333 Integrase core domain APY30_10425 PF01527 Transposase APY30_10430 PF00665 Integrase core domain APY30_10430 PF13276 HTH-like domain APY30_10430 PF13333 Integrase core domain APY30_10435 PF03377 TAL effector repeat APY30_10445 PF03372 Endonuclease/Exonuclease/phosphatase family APY30_10455 PF03453 MoeA N-terminal region (domain I and II) APY30_10455 PF00994 Probable molybdopterin binding domain APY30_10455 PF03454 MoeA C-terminal region (domain IV) APY30_10460 PF12804 MobA-like NTP transferase domain APY30_10470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY30_10470 PF14824 Sirohaem biosynthesis protein central APY30_10470 PF10414 Sirohaem synthase dimerisation region APY30_10490 PF05974 Domain of unknown function (DUF892) APY30_10505 PF08448 PAS fold APY30_10505 PF08447 PAS fold APY30_10505 PF00990 Diguanylate cyclase, GGDEF domain APY30_10505 PF00563 EAL domain APY30_10510 PF12951 Passenger-associated-transport-repeat APY30_10510 PF12951 Passenger-associated-transport-repeat APY30_10515 PF00196 Bacterial regulatory proteins, luxR family APY30_10515 PF00072 Response regulator receiver domain APY30_10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_10520 PF00512 His Kinase A (phospho-acceptor) domain APY30_10520 PF13426 PAS domain APY30_10520 PF08448 PAS fold APY30_10520 PF00072 Response regulator receiver domain APY30_10530 PF00873 AcrB/AcrD/AcrF family APY30_10535 PF00529 HlyD membrane-fusion protein of T1SS APY30_10535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_10540 PF00082 Subtilase family APY30_10540 PF03797 Autotransporter beta-domain APY30_10555 PF06580 Histidine kinase APY30_10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_10555 PF07694 5TMR of 5TMR-LYT APY30_10560 PF00072 Response regulator receiver domain APY30_10560 PF04397 LytTr DNA-binding domain APY30_10565 PF00144 Beta-lactamase APY30_10575 PF07995 Glucose / Sorbosone dehydrogenase APY30_10580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY30_10590 PF09335 SNARE associated Golgi protein APY30_10635 PF01106 NifU-like domain APY30_10640 PF01329 Pterin 4 alpha carbinolamine dehydratase APY30_10650 PF02535 ZIP Zinc transporter APY30_10655 PF11737 Protein of unknown function (DUF3300) APY30_10660 PF00849 RNA pseudouridylate synthase APY30_10660 PF01479 S4 domain APY30_10665 PF10150 Ribonuclease E/G family APY30_10665 PF00575 S1 RNA binding domain APY30_10665 PF12111 Polyribonucleotide phosphorylase C terminal APY30_10670 PF00196 Bacterial regulatory proteins, luxR family APY30_10670 PF00072 Response regulator receiver domain APY30_10685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY30_10695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APY30_10695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APY30_10695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APY30_10705 PF01648 4'-phosphopantetheinyl transferase superfamily APY30_10705 PF17837 4'-phosphopantetheinyl transferase N-terminal domain APY30_10710 PF00975 Thioesterase domain APY30_10710 PF00550 Phosphopantetheine attachment site APY30_10710 PF00668 Condensation domain APY30_10710 PF13193 AMP-binding enzyme C-terminal domain APY30_10710 PF00501 AMP-binding enzyme APY30_10770 PF18339 RapA N-terminal Tudor like domain 1 APY30_10770 PF00271 Helicase conserved C-terminal domain APY30_10770 PF12137 RNA polymerase recycling family C-terminal APY30_10770 PF18337 RapA N-terminal Tudor like domain APY30_10770 PF00176 SNF2 family N-terminal domain APY30_10775 PF00145 C-5 cytosine-specific DNA methylase APY30_10795 PF13614 AAA domain APY30_10830 PF00436 Single-strand binding protein family APY30_10835 PF01751 Toprim domain APY30_10835 PF01131 DNA topoisomerase APY30_10840 PF00145 C-5 cytosine-specific DNA methylase APY30_10875 PF02021 Uncharacterised protein family UPF0102 APY30_10905 PF13936 Helix-turn-helix domain APY30_10905 PF00665 Integrase core domain APY30_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_11030 PF03466 LysR substrate binding domain APY30_11035 PF07690 Major Facilitator Superfamily APY30_11120 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APY30_11140 PF11398 Protein of unknown function (DUF2813) APY30_11145 PF13361 UvrD-like helicase C-terminal domain APY30_11145 PF00580 UvrD/REP helicase N-terminal domain APY30_11145 PF12705 PD-(D/E)XK nuclease superfamily APY30_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_11155 PF03466 LysR substrate binding domain APY30_11160 PF00589 Phage integrase family APY30_11160 PF13356 Arm DNA-binding domain APY30_11180 PF01066 CDP-alcohol phosphatidyltransferase APY30_11185 PF02151 UvrB/uvrC motif APY30_11185 PF08459 UvrC Helix-hairpin-helix N-terminal APY30_11185 PF01541 GIY-YIG catalytic domain APY30_11195 PF01451 Low molecular weight phosphotyrosine protein phosphatase APY30_11200 PF02348 Cytidylyltransferase APY30_11205 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APY30_11210 PF00005 ABC transporter APY30_11210 PF00664 ABC transporter transmembrane region APY30_11220 PF01618 MotA/TolQ/ExbB proton channel family APY30_11225 PF00753 Metallo-beta-lactamase superfamily APY30_11225 PF03772 Competence protein APY30_11235 PF00005 ABC transporter APY30_11240 PF12704 MacB-like periplasmic core domain APY30_11240 PF02687 FtsX-like permease family APY30_11250 PF03937 Flavinator of succinate dehydrogenase APY30_11255 PF13085 2Fe-2S iron-sulfur cluster binding domain APY30_11265 PF02910 Fumarate reductase flavoprotein C-term APY30_11265 PF00890 FAD binding domain APY30_11270 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APY30_11275 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APY30_11285 PF17912 MalK OB fold domain APY30_11285 PF00005 ABC transporter APY30_11290 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APY30_11290 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APY30_11295 PF02685 Glucokinase APY30_11300 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APY30_11305 PF00920 Dehydratase family APY30_11310 PF01081 KDPG and KHG aldolase APY30_11315 PF00873 AcrB/AcrD/AcrF family APY30_11320 PF01527 Transposase APY30_11325 PF13683 Integrase core domain APY30_11325 PF13276 HTH-like domain APY30_11335 PF00873 AcrB/AcrD/AcrF family APY30_11340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_11350 PF00034 Cytochrome c APY30_11390 PF09308 LuxQ, periplasmic APY30_11390 PF00512 His Kinase A (phospho-acceptor) domain APY30_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_11390 PF00072 Response regulator receiver domain APY30_11395 PF09371 Tex-like protein N-terminal domain APY30_11395 PF16921 Tex protein YqgF-like domain APY30_11395 PF17674 HHH domain APY30_11395 PF00575 S1 RNA binding domain APY30_11405 PF01266 FAD dependent oxidoreductase APY30_11405 PF00355 Rieske [2Fe-2S] domain APY30_11420 PF00561 alpha/beta hydrolase fold APY30_11430 PF01066 CDP-alcohol phosphatidyltransferase APY30_11450 PF03618 Kinase/pyrophosphorylase APY30_11455 PF02896 PEP-utilising enzyme, TIM barrel domain APY30_11455 PF00391 PEP-utilising enzyme, mobile domain APY30_11455 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APY30_11460 PF05552 Conserved TM helix APY30_11460 PF00924 Mechanosensitive ion channel APY30_11465 PF07969 Amidohydrolase family APY30_11470 PF05977 Transmembrane secretion effector APY30_11485 PF00561 alpha/beta hydrolase fold APY30_11490 PF01566 Natural resistance-associated macrophage protein APY30_11495 PF01325 Iron dependent repressor, N-terminal DNA binding domain APY30_11495 PF02742 Iron dependent repressor, metal binding and dimerisation domain APY30_11500 PF14437 MafB19-like deaminase APY30_11505 PF00929 Exonuclease APY30_11515 PF00857 Isochorismatase family APY30_11530 PF00196 Bacterial regulatory proteins, luxR family APY30_11530 PF00072 Response regulator receiver domain APY30_11550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_11550 PF03466 LysR substrate binding domain APY30_11555 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY30_11555 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APY30_11555 PF00361 Proton-conducting membrane transporter APY30_11560 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) APY30_11570 PF03743 Bacterial conjugation TrbI-like protein APY30_11575 PF03524 Conjugal transfer protein APY30_11585 PF04610 TrbL/VirB6 plasmid conjugal transfer protein APY30_11600 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APY30_11615 PF00437 Type II/IV secretion system protein APY30_11625 PF02534 Type IV secretory system Conjugative DNA transfer APY30_11630 PF13276 HTH-like domain APY30_11630 PF00665 Integrase core domain APY30_11630 PF13333 Integrase core domain APY30_11650 PF00248 Aldo/keto reductase family APY30_11660 PF00107 Zinc-binding dehydrogenase APY30_11660 PF08240 Alcohol dehydrogenase GroES-like domain APY30_11700 PF00589 Phage integrase family APY30_11700 PF13356 Arm DNA-binding domain APY30_11705 PF00117 Glutamine amidotransferase class-I APY30_11705 PF00958 GMP synthase C terminal domain APY30_11705 PF02540 NAD synthase APY30_11710 PF00571 CBS domain APY30_11710 PF00478 IMP dehydrogenase / GMP reductase domain APY30_11715 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APY30_11715 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APY30_11725 PF02254 TrkA-N domain APY30_11725 PF00999 Sodium/hydrogen exchanger family APY30_11730 PF00483 Nucleotidyl transferase APY30_11735 PF02719 Polysaccharide biosynthesis protein APY30_11740 PF00953 Glycosyl transferase family 4 APY30_11745 PF18073 Rubredoxin metal binding domain APY30_11755 PF00216 Bacterial DNA-binding protein APY30_11760 PF00575 S1 RNA binding domain APY30_11765 PF02224 Cytidylate kinase APY30_11770 PF00444 Ribosomal protein L36 APY30_11780 PF04371 Porphyromonas-type peptidyl-arginine deiminase APY30_11785 PF00795 Carbon-nitrogen hydrolase APY30_11810 PF00528 Binding-protein-dependent transport system inner membrane component APY30_11815 PF00528 Binding-protein-dependent transport system inner membrane component APY30_11835 PF00356 Bacterial regulatory proteins, lacI family APY30_11845 PF03795 YCII-related domain APY30_11850 PF02616 Segregation and condensation protein ScpA APY30_11855 PF04079 Segregation and condensation complex subunit ScpB APY30_11860 PF01479 S4 domain APY30_11860 PF00849 RNA pseudouridylate synthase APY30_11875 PF00795 Carbon-nitrogen hydrolase APY30_11880 PF00155 Aminotransferase class I and II APY30_11885 PF00005 ABC transporter APY30_11890 PF03379 CcmB protein APY30_11895 PF01578 Cytochrome C assembly protein APY30_11905 PF03100 CcmE APY30_11910 PF01578 Cytochrome C assembly protein APY30_11910 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APY30_11915 PF08534 Redoxin APY30_11920 PF03918 Cytochrome C biogenesis protein APY30_11930 PF00561 alpha/beta hydrolase fold APY30_11935 PF00313 'Cold-shock' DNA-binding domain APY30_11940 PF00005 ABC transporter APY30_11940 PF00664 ABC transporter transmembrane region APY30_11945 PF00005 ABC transporter APY30_11945 PF00664 ABC transporter transmembrane region APY30_11950 PF01654 Cytochrome bd terminal oxidase subunit I APY30_11955 PF02322 Cytochrome bd terminal oxidase subunit II APY30_11970 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APY30_11970 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APY30_11975 PF00171 Aldehyde dehydrogenase family APY30_11980 PF01472 PUA domain APY30_11980 PF00696 Amino acid kinase family APY30_11990 PF00206 Lyase APY30_11995 PF01118 Semialdehyde dehydrogenase, NAD binding domain APY30_12005 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase APY30_12005 PF00696 Amino acid kinase family APY30_12020 PF00764 Arginosuccinate synthase APY30_12025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APY30_12025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APY30_12035 PF09190 DALR domain APY30_12035 PF01406 tRNA synthetases class I (C) catalytic domain APY30_12040 PF02657 Fe-S metabolism associated domain APY30_12050 PF01258 Prokaryotic dksA/traR C4-type zinc finger APY30_12060 PF01809 Putative membrane protein insertion efficiency factor APY30_12065 PF01979 Amidohydrolase family APY30_12070 PF08460 Bacterial SH3 domain APY30_12070 PF01551 Peptidase family M23 APY30_12085 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APY30_12090 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APY30_12100 PF00753 Metallo-beta-lactamase superfamily APY30_12130 PF13683 Integrase core domain APY30_12130 PF13276 HTH-like domain APY30_12135 PF00295 Glycosyl hydrolases family 28 APY30_12145 PF13419 Haloacid dehalogenase-like hydrolase APY30_12155 PF01979 Amidohydrolase family APY30_12165 PF09285 Elongation factor P, C-terminal APY30_12165 PF01132 Elongation factor P (EF-P) OB domain APY30_12165 PF08207 Elongation factor P (EF-P) KOW-like domain APY30_12170 PF04055 Radical SAM superfamily APY30_12175 PF00990 Diguanylate cyclase, GGDEF domain APY30_12175 PF03707 Bacterial signalling protein N terminal repeat APY30_12175 PF13188 PAS domain APY30_12175 PF00563 EAL domain APY30_12185 PF00588 SpoU rRNA Methylase family APY30_12190 PF00459 Inositol monophosphatase family APY30_12195 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APY30_12195 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APY30_12200 PF00545 ribonuclease APY30_12215 PF00271 Helicase conserved C-terminal domain APY30_12215 PF03880 DbpA RNA binding domain APY30_12215 PF00270 DEAD/DEAH box helicase APY30_12220 PF00156 Phosphoribosyl transferase domain APY30_12225 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APY30_12230 PF00135 Carboxylesterase family APY30_12235 PF14497 Glutathione S-transferase, C-terminal domain APY30_12235 PF02798 Glutathione S-transferase, N-terminal domain APY30_12240 PF00313 'Cold-shock' DNA-binding domain APY30_12245 PF07152 YaeQ protein APY30_12255 PF00990 Diguanylate cyclase, GGDEF domain APY30_12255 PF00072 Response regulator receiver domain APY30_12255 PF00563 EAL domain APY30_12260 PF01435 Peptidase family M48 APY30_12265 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY30_12270 PF00106 short chain dehydrogenase APY30_12275 PF07879 PHB/PHA accumulation regulator DNA-binding domain APY30_12275 PF05233 PHB accumulation regulatory domain APY30_12290 PF08676 MutL C terminal dimerisation domain APY30_12290 PF01119 DNA mismatch repair protein, C-terminal domain APY30_12295 PF01520 N-acetylmuramoyl-L-alanine amidase APY30_12295 PF11741 AMIN domain APY30_12300 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APY30_12305 PF01256 Carbohydrate kinase APY30_12305 PF03853 YjeF-related protein N-terminus APY30_12310 PF08331 Domain of unknown function (DUF1730) APY30_12315 PF02601 Exonuclease VII, large subunit APY30_12315 PF13742 OB-fold nucleic acid binding domain APY30_12325 PF03781 Sulfatase-modifying factor enzyme 1 APY30_12330 PF01612 3'-5' exonuclease APY30_12330 PF00570 HRDC domain APY30_12335 PF01068 ATP dependent DNA ligase domain APY30_12335 PF04679 ATP dependent DNA ligase C terminal region APY30_12335 PF13298 DNA polymerase Ligase (LigD) APY30_12355 PF00589 Phage integrase family APY30_12375 PF13276 HTH-like domain APY30_12375 PF00665 Integrase core domain APY30_12375 PF13333 Integrase core domain APY30_12410 PF01619 Proline dehydrogenase APY30_12410 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APY30_12410 PF00171 Aldehyde dehydrogenase family APY30_12410 PF14850 DNA-binding domain of Proline dehydrogenase APY30_12420 PF13276 HTH-like domain APY30_12420 PF13333 Integrase core domain APY30_12420 PF00665 Integrase core domain APY30_12450 PF01584 CheW-like domain APY30_12455 PF02743 Cache domain APY30_12455 PF00672 HAMP domain APY30_12455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_12460 PF02245 Methylpurine-DNA glycosylase (MPG) APY30_12465 PF00271 Helicase conserved C-terminal domain APY30_12465 PF08494 DEAD/H associated APY30_12465 PF00270 DEAD/DEAH box helicase APY30_12480 PF04386 Stringent starvation protein B APY30_12485 PF02798 Glutathione S-transferase, N-terminal domain APY30_12485 PF00043 Glutathione S-transferase, C-terminal domain APY30_12490 PF02167 Cytochrome C1 family APY30_12495 PF00033 Cytochrome b/b6/petB APY30_12495 PF00032 Cytochrome b(C-terminal)/b6/petD APY30_12500 PF00355 Rieske [2Fe-2S] domain APY30_12500 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APY30_12505 PF01464 Transglycosylase SLT domain APY30_12520 PF01938 TRAM domain APY30_12520 PF00919 Uncharacterized protein family UPF0004 APY30_12520 PF04055 Radical SAM superfamily APY30_12525 PF02562 PhoH-like protein APY30_12535 PF02130 Uncharacterized protein family UPF0054 APY30_12545 PF00571 CBS domain APY30_12545 PF03471 Transporter associated domain APY30_12560 PF00171 Aldehyde dehydrogenase family APY30_12570 PF00528 Binding-protein-dependent transport system inner membrane component APY30_12575 PF00528 Binding-protein-dependent transport system inner membrane component APY30_12585 PF02321 Outer membrane efflux protein APY30_12590 PF07690 Major Facilitator Superfamily APY30_12595 PF13533 Biotin-lipoyl like APY30_12600 PF13416 Bacterial extracellular solute-binding protein APY30_12605 PF00202 Aminotransferase class-III APY30_12610 PF00120 Glutamine synthetase, catalytic domain APY30_12615 PF07722 Peptidase C26 APY30_12620 PF00120 Glutamine synthetase, catalytic domain APY30_12625 PF01266 FAD dependent oxidoreductase APY30_12630 PF00990 Diguanylate cyclase, GGDEF domain APY30_12630 PF00072 Response regulator receiver domain APY30_12635 PF01814 Hemerythrin HHE cation binding domain APY30_12640 PF00083 Sugar (and other) transporter APY30_12640 PF07690 Major Facilitator Superfamily APY30_12650 PF00384 Molybdopterin oxidoreductase APY30_12655 PF02634 FdhD/NarQ family APY30_12660 PF07690 Major Facilitator Superfamily APY30_12670 PF00202 Aminotransferase class-III APY30_12680 PF04286 Protein of unknown function (DUF445) APY30_12685 PF01627 Hpt domain APY30_12685 PF00512 His Kinase A (phospho-acceptor) domain APY30_12685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_12685 PF00072 Response regulator receiver domain APY30_12685 PF00672 HAMP domain APY30_12685 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY30_12690 PF00072 Response regulator receiver domain APY30_12695 PF07690 Major Facilitator Superfamily APY30_12700 PF05088 Bacterial NAD-glutamate dehydrogenase APY30_12710 PF00529 HlyD membrane-fusion protein of T1SS APY30_12710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_12715 PF00873 AcrB/AcrD/AcrF family APY30_12720 PF00356 Bacterial regulatory proteins, lacI family APY30_12725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APY30_12725 PF00381 PTS HPr component phosphorylation site APY30_12725 PF05524 PEP-utilising enzyme, N-terminal APY30_12725 PF00391 PEP-utilising enzyme, mobile domain APY30_12725 PF02896 PEP-utilising enzyme, TIM barrel domain APY30_12730 PF00294 pfkB family carbohydrate kinase APY30_12735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APY30_12755 PF13276 HTH-like domain APY30_12755 PF00665 Integrase core domain APY30_12755 PF13333 Integrase core domain APY30_12790 PF02355 Protein export membrane protein APY30_12790 PF07549 SecD/SecF GG Motif APY30_12795 PF02355 Protein export membrane protein APY30_12795 PF13721 SecD export protein N-terminal TM region APY30_12795 PF07549 SecD/SecF GG Motif APY30_12800 PF02699 Preprotein translocase subunit APY30_12805 PF01702 Queuine tRNA-ribosyltransferase APY30_12810 PF02547 Queuosine biosynthesis protein APY30_12835 PF13333 Integrase core domain APY30_12835 PF00665 Integrase core domain APY30_12835 PF13276 HTH-like domain APY30_12865 PF02927 Cellulase N-terminal ig-like domain APY30_12865 PF00759 Glycosyl hydrolase family 9 APY30_12880 PF00037 4Fe-4S binding domain APY30_12895 PF01467 Cytidylyltransferase-like APY30_12905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_12905 PF00183 Hsp90 protein APY30_12940 PF07715 TonB-dependent Receptor Plug Domain APY30_12940 PF00593 TonB dependent receptor APY30_12950 PF04616 Glycosyl hydrolases family 43 APY30_12955 PF07532 Bacterial Ig-like domain (group 4) APY30_12960 PF00593 TonB dependent receptor APY30_12960 PF07715 TonB-dependent Receptor Plug Domain APY30_12970 PF00082 Subtilase family APY30_12970 PF09286 Pro-kumamolisin, activation domain APY30_12995 PF13520 Amino acid permease APY30_13010 PF01321 Creatinase/Prolidase N-terminal domain APY30_13010 PF00557 Metallopeptidase family M24 APY30_13015 PF00171 Aldehyde dehydrogenase family APY30_13020 PF00701 Dihydrodipicolinate synthetase family APY30_13025 PF04324 BFD-like [2Fe-2S] binding domain APY30_13025 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_13035 PF01266 FAD dependent oxidoreductase APY30_13040 PF05544 Proline racemase APY30_13050 PF00448 SRP54-type protein, GTPase domain APY30_13050 PF02881 SRP54-type protein, helical bundle domain APY30_13055 PF14815 NUDIX domain APY30_13055 PF10576 Iron-sulfur binding domain of endonuclease III APY30_13055 PF00633 Helix-hairpin-helix motif APY30_13055 PF00730 HhH-GPD superfamily base excision DNA repair protein APY30_13060 PF04362 Bacterial Fe(2+) trafficking APY30_13065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_13065 PF13426 PAS domain APY30_13065 PF00072 Response regulator receiver domain APY30_13095 PF08212 Lipocalin-like domain APY30_13105 PF12806 Acetyl-CoA dehydrogenase C-terminal like APY30_13105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY30_13105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_13105 PF02770 Acyl-CoA dehydrogenase, middle domain APY30_13115 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APY30_13115 PF02780 Transketolase, C-terminal domain APY30_13115 PF02779 Transketolase, pyrimidine binding domain APY30_13135 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family APY30_13140 PF00753 Metallo-beta-lactamase superfamily APY30_13140 PF16123 Hydroxyacylglutathione hydrolase C-terminus APY30_13145 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY30_13145 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY30_13160 PF03808 Glycosyl transferase WecB/TagA/CpsF family APY30_13175 PF14667 Polysaccharide biosynthesis C-terminal domain APY30_13185 PF00534 Glycosyl transferases group 1 APY30_13185 PF13439 Glycosyltransferase Family 4 APY30_13205 PF02397 Bacterial sugar transferase APY30_13225 PF13411 MerR HTH family regulatory protein APY30_13230 PF00216 Bacterial DNA-binding protein APY30_13235 PF03483 B3/4 domain APY30_13235 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APY30_13235 PF03484 tRNA synthetase B5 domain APY30_13235 PF03147 Ferredoxin-fold anticodon binding domain APY30_13235 PF01588 Putative tRNA binding domain APY30_13240 PF01409 tRNA synthetases class II core domain (F) APY30_13240 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APY30_13245 PF00453 Ribosomal protein L20 APY30_13250 PF01632 Ribosomal protein L35 APY30_13255 PF00707 Translation initiation factor IF-3, C-terminal domain APY30_13255 PF05198 Translation initiation factor IF-3, N-terminal domain APY30_13260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APY30_13260 PF02824 TGS domain APY30_13260 PF03129 Anticodon binding domain APY30_13260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APY30_13265 PF00356 Bacterial regulatory proteins, lacI family APY30_13270 PF00128 Alpha amylase, catalytic domain APY30_13270 PF00686 Starch binding domain APY30_13320 PF03135 CagE, TrbE, VirB family, component of type IV transporter system APY30_13335 PF01464 Transglycosylase SLT domain APY30_13340 PF00437 Type II/IV secretion system protein APY30_13345 PF03743 Bacterial conjugation TrbI-like protein APY30_13365 PF02534 Type IV secretory system Conjugative DNA transfer APY30_13380 PF02151 UvrB/uvrC motif APY30_13380 PF17757 UvrB interaction domain APY30_13380 PF00271 Helicase conserved C-terminal domain APY30_13380 PF12344 Ultra-violet resistance protein B APY30_13380 PF04851 Type III restriction enzyme, res subunit APY30_13400 PF05567 Neisseria PilC beta-propeller domain APY30_13420 PF11892 Domain of unknown function (DUF3412) APY30_13420 PF03641 Possible lysine decarboxylase APY30_13420 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases APY30_13425 PF00593 TonB dependent receptor APY30_13430 PF01914 MarC family integral membrane protein APY30_13440 PF00462 Glutaredoxin APY30_13445 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APY30_13445 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APY30_13450 PF02222 ATP-grasp domain APY30_13450 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APY30_13455 PF00731 AIR carboxylase APY30_13465 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APY30_13465 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APY30_13475 PF01138 3' exoribonuclease family, domain 1 APY30_13475 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APY30_13475 PF03725 3' exoribonuclease family, domain 2 APY30_13475 PF00013 KH domain APY30_13475 PF00575 S1 RNA binding domain APY30_13480 PF00312 Ribosomal protein S15 APY30_13485 PF09157 Pseudouridine synthase II TruB, C-terminal APY30_13485 PF16198 tRNA pseudouridylate synthase B C-terminal domain APY30_13485 PF01509 TruB family pseudouridylate synthase (N terminal domain) APY30_13490 PF02033 Ribosome-binding factor A APY30_13495 PF04760 Translation initiation factor IF-2, N-terminal region APY30_13495 PF11987 Translation-initiation factor 2 APY30_13495 PF00009 Elongation factor Tu GTP binding domain APY30_13495 PF08364 Bacterial translation initiation factor IF-2 associated region APY30_13500 PF08529 NusA N-terminal domain APY30_13500 PF13184 NusA-like KH domain APY30_13500 PF00575 S1 RNA binding domain APY30_13505 PF17384 RimP C-terminal SH3 domain APY30_13505 PF02576 RimP N-terminal domain APY30_13515 PF00361 Proton-conducting membrane transporter APY30_13520 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APY30_13520 PF00361 Proton-conducting membrane transporter APY30_13525 PF00361 Proton-conducting membrane transporter APY30_13525 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY30_13530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APY30_13535 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APY30_13540 PF12838 4Fe-4S dicluster domain APY30_13545 PF00146 NADH dehydrogenase APY30_13550 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APY30_13550 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APY30_13550 PF00384 Molybdopterin oxidoreductase APY30_13555 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APY30_13555 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APY30_13555 PF10531 SLBB domain APY30_13565 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APY30_13570 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APY30_13575 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APY30_13580 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APY30_13595 PF00121 Triosephosphate isomerase APY30_13600 PF00106 short chain dehydrogenase APY30_13615 PF00563 EAL domain APY30_13615 PF00990 Diguanylate cyclase, GGDEF domain APY30_13615 PF03707 Bacterial signalling protein N terminal repeat APY30_13635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APY30_13635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APY30_13635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APY30_13635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APY30_13640 PF17848 Acetyl-coA carboxylase zinc finger domain APY30_13640 PF01039 Carboxyl transferase domain APY30_13645 PF00290 Tryptophan synthase alpha chain APY30_13655 PF00291 Pyridoxal-phosphate dependent enzyme APY30_13660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_13660 PF03466 LysR substrate binding domain APY30_13665 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APY30_13670 PF01416 tRNA pseudouridine synthase APY30_13690 PF01118 Semialdehyde dehydrogenase, NAD binding domain APY30_13690 PF02774 Semialdehyde dehydrogenase, dimerisation domain APY30_13695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APY30_13695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APY30_13700 PF01264 Chorismate synthase APY30_13705 PF05175 Methyltransferase small domain APY30_13710 PF02630 SCO1/SenC APY30_13715 PF02666 Phosphatidylserine decarboxylase APY30_13730 PF00665 Integrase core domain APY30_13730 PF13276 HTH-like domain APY30_13730 PF13333 Integrase core domain APY30_13735 PF01527 Transposase APY30_13745 PF05872 Bacterial protein of unknown function (DUF853) APY30_13750 PF00293 NUDIX domain APY30_13765 PF01272 Transcription elongation factor, GreA/GreB, C-term APY30_13765 PF03449 Transcription elongation factor, N-terminal APY30_13770 PF00919 Uncharacterized protein family UPF0004 APY30_13770 PF04055 Radical SAM superfamily APY30_13770 PF18693 TRAM domain APY30_13780 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APY30_13790 PF01434 Peptidase family M41 APY30_13790 PF17862 AAA+ lid domain APY30_13790 PF00004 ATPase family associated with various cellular activities (AAA) APY30_13790 PF06480 FtsH Extracellular APY30_13795 PF00082 Subtilase family APY30_13810 PF13276 HTH-like domain APY30_13810 PF00665 Integrase core domain APY30_13810 PF13333 Integrase core domain APY30_13820 PF01738 Dienelactone hydrolase family APY30_13840 PF00692 dUTPase APY30_13845 PF10609 NUBPL iron-transfer P-loop NTPase APY30_13850 PF00593 TonB dependent receptor APY30_13850 PF07715 TonB-dependent Receptor Plug Domain APY30_13865 PF05649 Peptidase family M13 APY30_13865 PF01431 Peptidase family M13 APY30_13870 PF05649 Peptidase family M13 APY30_13870 PF01431 Peptidase family M13 APY30_13885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APY30_13890 PF07992 Pyridine nucleotide-disulphide oxidoreductase APY30_13890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APY30_13895 PF01266 FAD dependent oxidoreductase APY30_13900 PF04235 Protein of unknown function (DUF418) APY30_13905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APY30_13910 PF00877 NlpC/P60 family APY30_13915 PF00877 NlpC/P60 family APY30_13930 PF00375 Sodium:dicarboxylate symporter family APY30_13935 PF00245 Alkaline phosphatase APY30_13945 PF01171 PP-loop family APY30_13945 PF11734 TilS substrate C-terminal domain APY30_13945 PF09179 TilS substrate binding domain APY30_13950 PF02609 Exonuclease VII small subunit APY30_13955 PF00348 Polyprenyl synthetase APY30_13960 PF14521 Lysine-specific metallo-endopeptidase APY30_13970 PF01523 Putative modulator of DNA gyrase APY30_13975 PF04751 Protein of unknown function (DUF615) APY30_13980 PF01523 Putative modulator of DNA gyrase APY30_13990 PF13116 Protein of unknown function APY30_13990 PF13502 AsmA-like C-terminal region APY30_13995 PF00575 S1 RNA binding domain APY30_13995 PF10150 Ribonuclease E/G family APY30_14000 PF02545 Maf-like protein APY30_14005 PF04402 Protein of unknown function (DUF541) APY30_14020 PF02590 Predicted SPOUT methyltransferase APY30_14035 PF01467 Cytidylyltransferase-like APY30_14050 PF13603 Leucyl-tRNA synthetase, Domain 2 APY30_14050 PF00133 tRNA synthetases class I (I, L, M and V) APY30_14050 PF08264 Anticodon-binding domain of tRNA APY30_14060 PF00085 Thioredoxin APY30_14095 PF04070 Domain of unknown function (DUF378) APY30_14100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APY30_14140 PF00005 ABC transporter APY30_14140 PF00664 ABC transporter transmembrane region APY30_14150 PF00873 AcrB/AcrD/AcrF family APY30_14165 PF02321 Outer membrane efflux protein APY30_14170 PF00486 Transcriptional regulatory protein, C terminal APY30_14170 PF00072 Response regulator receiver domain APY30_14180 PF00999 Sodium/hydrogen exchanger family APY30_14185 PF00144 Beta-lactamase APY30_14190 PF03737 Aldolase/RraA APY30_14210 PF00990 Diguanylate cyclase, GGDEF domain APY30_14210 PF00072 Response regulator receiver domain APY30_14215 PF00849 RNA pseudouridylate synthase APY30_14215 PF01479 S4 domain APY30_14220 PF08448 PAS fold APY30_14220 PF00563 EAL domain APY30_14220 PF00990 Diguanylate cyclase, GGDEF domain APY30_14225 PF03880 DbpA RNA binding domain APY30_14225 PF00271 Helicase conserved C-terminal domain APY30_14225 PF00270 DEAD/DEAH box helicase APY30_14275 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APY30_14275 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APY30_14285 PF00654 Voltage gated chloride channel APY30_14290 PF00107 Zinc-binding dehydrogenase APY30_14290 PF08240 Alcohol dehydrogenase GroES-like domain APY30_14305 PF07715 TonB-dependent Receptor Plug Domain APY30_14305 PF00593 TonB dependent receptor APY30_14315 PF01483 Proprotein convertase P-domain APY30_14315 PF00082 Subtilase family APY30_14325 PF01483 Proprotein convertase P-domain APY30_14325 PF00082 Subtilase family APY30_14340 PF07690 Major Facilitator Superfamily APY30_14345 PF03466 LysR substrate binding domain APY30_14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_14355 PF12833 Helix-turn-helix domain APY30_14355 PF06719 AraC-type transcriptional regulator N-terminus APY30_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_14365 PF03466 LysR substrate binding domain APY30_14370 PF00248 Aldo/keto reductase family APY30_14375 PF16859 Tetracyclin repressor-like, C-terminal domain APY30_14375 PF00440 Bacterial regulatory proteins, tetR family APY30_14380 PF02321 Outer membrane efflux protein APY30_14385 PF00873 AcrB/AcrD/AcrF family APY30_14390 PF00529 HlyD membrane-fusion protein of T1SS APY30_14390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_14400 PF01475 Ferric uptake regulator family APY30_14405 PF00749 tRNA synthetases class I (E and Q), catalytic domain APY30_14430 PF06123 Inner membrane protein CreD APY30_14445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_14445 PF00672 HAMP domain APY30_14445 PF00512 His Kinase A (phospho-acceptor) domain APY30_14450 PF00486 Transcriptional regulatory protein, C terminal APY30_14450 PF00072 Response regulator receiver domain APY30_14455 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APY30_14465 PF02559 CarD-like/TRCF domain APY30_14465 PF17757 UvrB interaction domain APY30_14465 PF00270 DEAD/DEAH box helicase APY30_14465 PF03461 TRCF domain APY30_14465 PF00271 Helicase conserved C-terminal domain APY30_14495 PF09078 CheY binding APY30_14495 PF01627 Hpt domain APY30_14495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_14495 PF02895 Signal transducing histidine kinase, homodimeric domain APY30_14495 PF01584 CheW-like domain APY30_14500 PF02203 Tar ligand binding domain homologue APY30_14500 PF00672 HAMP domain APY30_14500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_14505 PF01584 CheW-like domain APY30_14510 PF13426 PAS domain APY30_14510 PF00563 EAL domain APY30_14510 PF00990 Diguanylate cyclase, GGDEF domain APY30_14515 PF01739 CheR methyltransferase, SAM binding domain APY30_14515 PF03705 CheR methyltransferase, all-alpha domain APY30_14520 PF01339 CheB methylesterase APY30_14520 PF00072 Response regulator receiver domain APY30_14525 PF13091 PLD-like domain APY30_14530 PF01431 Peptidase family M13 APY30_14530 PF05649 Peptidase family M13 APY30_14540 PF00300 Histidine phosphatase superfamily (branch 1) APY30_14545 PF04493 Endonuclease V APY30_14555 PF05726 Pirin C-terminal cupin domain APY30_14555 PF02678 Pirin APY30_14570 PF02678 Pirin APY30_14570 PF05726 Pirin C-terminal cupin domain APY30_14575 PF02554 Carbon starvation protein CstA APY30_14575 PF13722 5TM C-terminal transporter carbon starvation CstA APY30_14580 PF04328 Selenoprotein, putative APY30_14625 PF02625 XdhC and CoxI family APY30_14625 PF13478 XdhC Rossmann domain APY30_14635 PF00941 FAD binding domain in molybdopterin dehydrogenase APY30_14635 PF03450 CO dehydrogenase flavoprotein C-terminal domain APY30_14640 PF00111 2Fe-2S iron-sulfur cluster binding domain APY30_14640 PF10518 TAT (twin-arginine translocation) pathway signal sequence APY30_14640 PF01799 [2Fe-2S] binding domain APY30_14645 PF00698 Acyl transferase domain APY30_14645 PF00107 Zinc-binding dehydrogenase APY30_14645 PF02801 Beta-ketoacyl synthase, C-terminal domain APY30_14645 PF00109 Beta-ketoacyl synthase, N-terminal domain APY30_14645 PF14765 Polyketide synthase dehydratase APY30_14645 PF16197 Ketoacyl-synthetase C-terminal extension APY30_14645 PF08240 Alcohol dehydrogenase GroES-like domain APY30_14645 PF08659 KR domain APY30_14645 PF00550 Phosphopantetheine attachment site APY30_14650 PF00563 EAL domain APY30_14650 PF00360 Phytochrome region APY30_14650 PF00990 Diguanylate cyclase, GGDEF domain APY30_14650 PF01590 GAF domain APY30_14655 PF00436 Single-strand binding protein family APY30_14660 PF00348 Polyprenyl synthetase APY30_14670 PF02875 Mur ligase family, glutamate ligase domain APY30_14670 PF08245 Mur ligase middle domain APY30_14685 PF01842 ACT domain APY30_14685 PF00696 Amino acid kinase family APY30_14690 PF02567 Phenazine biosynthesis-like protein APY30_14695 PF02567 Phenazine biosynthesis-like protein APY30_14705 PF02566 OsmC-like protein APY30_14710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APY30_14710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APY30_14715 PF03652 Holliday junction resolvase APY30_14720 PF02622 Uncharacterized ACR, COG1678 APY30_14730 PF00958 GMP synthase C terminal domain APY30_14730 PF13302 Acetyltransferase (GNAT) domain APY30_14730 PF03352 Methyladenine glycosylase APY30_14730 PF13673 Acetyltransferase (GNAT) domain APY30_14730 PF00117 Glutamine amidotransferase class-I APY30_14745 PF00437 Type II/IV secretion system protein APY30_14750 PF00437 Type II/IV secretion system protein APY30_14755 PF01168 Alanine racemase, N-terminal domain APY30_14760 PF03807 NADP oxidoreductase coenzyme F420-dependent APY30_14760 PF14748 Pyrroline-5-carboxylate reductase dimerisation APY30_14770 PF01551 Peptidase family M23 APY30_14790 PF01965 DJ-1/PfpI family APY30_14800 PF02082 Transcriptional regulator APY30_14805 PF01458 Uncharacterized protein family (UPF0051) APY30_14810 PF00005 ABC transporter APY30_14815 PF01458 Uncharacterized protein family (UPF0051) APY30_14820 PF00266 Aminotransferase class-V APY30_14830 PF00355 Rieske [2Fe-2S] domain APY30_14835 PF00593 TonB dependent receptor APY30_14835 PF07715 TonB-dependent Receptor Plug Domain APY30_14840 PF18331 PKHD-type hydroxylase C-terminal domain APY30_14840 PF13640 2OG-Fe(II) oxygenase superfamily APY30_14865 PF02424 ApbE family APY30_14870 PF00175 Oxidoreductase NAD-binding domain APY30_14870 PF00667 FAD binding domain APY30_14870 PF00258 Flavodoxin APY30_14900 PF01636 Phosphotransferase enzyme family APY30_14905 PF00483 Nucleotidyl transferase APY30_14910 PF00308 Bacterial dnaA protein APY30_14915 PF01594 AI-2E family transporter APY30_14925 PF00586 AIR synthase related protein, N-terminal domain APY30_14925 PF02769 AIR synthase related protein, C-terminal domain APY30_14940 PF00551 Formyl transferase APY30_14960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APY30_14965 PF01722 BolA-like protein APY30_14970 PF01380 SIS domain APY30_14970 PF00571 CBS domain APY30_14985 PF03968 OstA-like protein APY30_14990 PF00005 ABC transporter APY30_14995 PF04552 Sigma-54, DNA binding domain APY30_14995 PF00309 Sigma-54 factor, Activator interacting domain (AID) APY30_14995 PF04963 Sigma-54 factor, core binding domain APY30_15000 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APY30_15005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APY30_15010 PF07475 HPr Serine kinase C-terminal domain APY30_15010 PF02603 HPr Serine kinase N terminus APY30_15015 PF03668 P-loop ATPase protein family APY30_15025 PF00381 PTS HPr component phosphorylation site APY30_15030 PF02896 PEP-utilising enzyme, TIM barrel domain APY30_15030 PF00391 PEP-utilising enzyme, mobile domain APY30_15030 PF05524 PEP-utilising enzyme, N-terminal APY30_15035 PF01769 Divalent cation transporter APY30_15035 PF03448 MgtE intracellular N domain APY30_15035 PF00571 CBS domain APY30_15040 PF00756 Putative esterase APY30_15045 PF02322 Cytochrome bd terminal oxidase subunit II APY30_15050 PF01654 Cytochrome bd terminal oxidase subunit I APY30_15060 PF00324 Amino acid permease APY30_15070 PF01527 Transposase APY30_15075 PF13276 HTH-like domain APY30_15075 PF13683 Integrase core domain APY30_15085 PF00561 alpha/beta hydrolase fold APY30_15095 PF00196 Bacterial regulatory proteins, luxR family APY30_15100 PF00324 Amino acid permease APY30_15125 PF12706 Beta-lactamase superfamily domain APY30_15130 PF04820 Tryptophan halogenase APY30_15160 PF09278 MerR, DNA binding APY30_15160 PF00376 MerR family regulatory protein APY30_15170 PF01527 Transposase APY30_15175 PF00665 Integrase core domain APY30_15175 PF13333 Integrase core domain APY30_15175 PF13276 HTH-like domain APY30_15190 PF03738 Glutathionylspermidine synthase preATP-grasp APY30_15215 PF04012 PspA/IM30 family APY30_15225 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APY30_15225 PF01243 Pyridoxamine 5'-phosphate oxidase APY30_15230 PF01202 Shikimate kinase APY30_15235 PF01761 3-dehydroquinate synthase APY30_15245 PF01208 Uroporphyrinogen decarboxylase (URO-D) APY30_15255 PF00672 HAMP domain APY30_15255 PF17149 Periplasmic sensor domain found in signal transduction proteins APY30_15255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_15255 PF00072 Response regulator receiver domain APY30_15255 PF00512 His Kinase A (phospho-acceptor) domain APY30_15255 PF01627 Hpt domain APY30_15260 PF00072 Response regulator receiver domain APY30_15260 PF00512 His Kinase A (phospho-acceptor) domain APY30_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_15260 PF00672 HAMP domain APY30_15260 PF17149 Periplasmic sensor domain found in signal transduction proteins APY30_15260 PF01627 Hpt domain APY30_15265 PF00512 His Kinase A (phospho-acceptor) domain APY30_15265 PF00072 Response regulator receiver domain APY30_15265 PF01627 Hpt domain APY30_15265 PF00989 PAS fold APY30_15265 PF18415 Histidine kinase receptor ArcB trans-membrane domain APY30_15265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_15270 PF01627 Hpt domain APY30_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_15270 PF00512 His Kinase A (phospho-acceptor) domain APY30_15270 PF00072 Response regulator receiver domain APY30_15275 PF04264 YceI-like domain APY30_15295 PF03315 Serine dehydratase beta chain APY30_15295 PF03313 Serine dehydratase alpha chain APY30_15305 PF00742 Homoserine dehydrogenase APY30_15305 PF03447 Homoserine dehydrogenase, NAD binding domain APY30_15305 PF00696 Amino acid kinase family APY30_15310 PF01053 Cys/Met metabolism PLP-dependent enzyme APY30_15315 PF00561 alpha/beta hydrolase fold APY30_15320 PF01551 Peptidase family M23 APY30_15320 PF01476 LysM domain APY30_15320 PF08525 Opacity-associated protein A N-terminal motif APY30_15325 PF16658 Class II release factor RF3, C-terminal domain APY30_15325 PF00009 Elongation factor Tu GTP binding domain APY30_15330 PF03006 Haemolysin-III related APY30_15335 PF05170 AsmA family APY30_15340 PF00571 CBS domain APY30_15340 PF00478 IMP dehydrogenase / GMP reductase domain APY30_15345 PF00535 Glycosyl transferase family 2 APY30_15350 PF00912 Transglycosylase APY30_15355 PF01430 Hsp33 protein APY30_15365 PF07715 TonB-dependent Receptor Plug Domain APY30_15365 PF00593 TonB dependent receptor APY30_15370 PF13276 HTH-like domain APY30_15370 PF13333 Integrase core domain APY30_15370 PF00665 Integrase core domain APY30_15380 PF01527 Transposase APY30_15385 PF13276 HTH-like domain APY30_15385 PF13683 Integrase core domain APY30_15405 PF00440 Bacterial regulatory proteins, tetR family APY30_15410 PF00561 alpha/beta hydrolase fold APY30_15415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY30_15415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_15415 PF09317 Domain of unknown function (DUF1974) APY30_15445 PF01597 Glycine cleavage H-protein APY30_15450 PF01571 Aminomethyltransferase folate-binding domain APY30_15450 PF08669 Glycine cleavage T-protein C-terminal barrel domain APY30_15460 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APY30_15465 PF03819 MazG nucleotide pyrophosphohydrolase domain APY30_15470 PF00459 Inositol monophosphatase family APY30_15475 PF00293 NUDIX domain APY30_15480 PF00202 Aminotransferase class-III APY30_15485 PF04452 RNA methyltransferase APY30_15490 PF02685 Glucokinase APY30_15505 PF01476 LysM domain APY30_15505 PF00704 Glycosyl hydrolases family 18 APY30_15510 PF07691 PA14 domain APY30_15510 PF02838 Glycosyl hydrolase family 20, domain 2 APY30_15510 PF00728 Glycosyl hydrolase family 20, catalytic domain APY30_15520 PF07691 PA14 domain APY30_15520 PF14310 Fibronectin type III-like domain APY30_15520 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY30_15520 PF00933 Glycosyl hydrolase family 3 N terminal domain APY30_15525 PF00664 ABC transporter transmembrane region APY30_15525 PF03412 Peptidase C39 family APY30_15525 PF00005 ABC transporter APY30_15555 PF07971 Glycosyl hydrolase family 92 APY30_15555 PF17678 Glycosyl hydrolase family 92 N-terminal domain APY30_15560 PF01301 Glycosyl hydrolases family 35 APY30_15590 PF03932 CutC family APY30_15595 PF01112 Asparaginase APY30_15605 PF13302 Acetyltransferase (GNAT) domain APY30_15620 PF01627 Hpt domain APY30_15620 PF00072 Response regulator receiver domain APY30_15620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_15620 PF01584 CheW-like domain APY30_15625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_15625 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APY30_15630 PF01584 CheW-like domain APY30_15635 PF00072 Response regulator receiver domain APY30_15640 PF00072 Response regulator receiver domain APY30_15645 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APY30_15645 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APY30_15655 PF03747 ADP-ribosylglycohydrolase APY30_15660 PF00814 Glycoprotease family APY30_15665 PF13307 Helicase C-terminal domain APY30_15665 PF04851 Type III restriction enzyme, res subunit APY30_15675 PF00905 Penicillin binding protein transpeptidase domain APY30_15675 PF00912 Transglycosylase APY30_15675 PF14814 Bifunctional transglycosylase second domain APY30_15680 PF00535 Glycosyl transferase family 2 APY30_15690 PF04607 Region found in RelA / SpoT proteins APY30_15690 PF02824 TGS domain APY30_15690 PF13291 ACT domain APY30_15695 PF12706 Beta-lactamase superfamily domain APY30_15700 PF03070 TENA/THI-4/PQQC family APY30_15705 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APY30_15710 PF13186 Iron-sulfur cluster-binding domain APY30_15710 PF04055 Radical SAM superfamily APY30_15725 PF02685 Glucokinase APY30_15735 PF00271 Helicase conserved C-terminal domain APY30_15735 PF11898 Domain of unknown function (DUF3418) APY30_15735 PF00270 DEAD/DEAH box helicase APY30_15735 PF04408 Helicase associated domain (HA2) APY30_15735 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APY30_15740 PF00210 Ferritin-like domain APY30_15745 PF09382 RQC domain APY30_15745 PF00270 DEAD/DEAH box helicase APY30_15745 PF00271 Helicase conserved C-terminal domain APY30_15745 PF00570 HRDC domain APY30_15745 PF16124 RecQ zinc-binding APY30_15780 PF00672 HAMP domain APY30_15780 PF02203 Tar ligand binding domain homologue APY30_15780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_15800 PF07536 HWE histidine kinase APY30_15800 PF13581 Histidine kinase-like ATPase domain APY30_15800 PF13426 PAS domain APY30_15805 PF06508 Queuosine biosynthesis protein QueC APY30_15815 PF04055 Radical SAM superfamily APY30_15825 PF00691 OmpA family APY30_15830 PF07676 WD40-like Beta Propeller Repeat APY30_15830 PF04052 TolB amino-terminal domain APY30_15840 PF02472 Biopolymer transport protein ExbD/TolR APY30_15845 PF01618 MotA/TolQ/ExbB proton channel family APY30_15850 PF03061 Thioesterase superfamily APY30_15855 PF17864 RuvB AAA lid domain APY30_15855 PF05491 RuvB C-terminal winged helix domain APY30_15855 PF05496 Holliday junction DNA helicase RuvB P-loop domain APY30_15865 PF02705 K+ potassium transporter APY30_15870 PF07499 RuvA, C-terminal domain APY30_15870 PF01330 RuvA N terminal domain APY30_15875 PF02075 Crossover junction endodeoxyribonuclease RuvC APY30_15880 PF01709 Transcriptional regulator APY30_15895 PF02938 GAD domain APY30_15895 PF00152 tRNA synthetases class II (D, K and N) APY30_15895 PF01336 OB-fold nucleic acid binding domain APY30_15910 PF07690 Major Facilitator Superfamily APY30_15930 PF03466 LysR substrate binding domain APY30_15930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_15940 PF12848 ABC transporter APY30_15940 PF00005 ABC transporter APY30_15965 PF07715 TonB-dependent Receptor Plug Domain APY30_15965 PF00593 TonB dependent receptor APY30_15975 PF00999 Sodium/hydrogen exchanger family APY30_15975 PF02254 TrkA-N domain APY30_16000 PF00593 TonB dependent receptor APY30_16000 PF07715 TonB-dependent Receptor Plug Domain APY30_16000 PF07660 Secretin and TonB N terminus short domain APY30_16010 PF06276 Ferric iron reductase FhuF-like transporter APY30_16010 PF04183 IucA / IucC family APY30_16015 PF07690 Major Facilitator Superfamily APY30_16025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APY30_16025 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APY30_16035 PF02654 Cobalamin-5-phosphate synthase APY30_16045 PF02277 Phosphoribosyltransferase APY30_16050 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APY30_16055 PF07685 CobB/CobQ-like glutamine amidotransferase domain APY30_16055 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APY30_16065 PF03186 CobD/Cbib protein APY30_16065 PF17113 Regulatory signalling modulator protein AmpE APY30_16070 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APY30_16070 PF12557 Cob(I)alamin adenosyltransferase N terminal APY30_16085 PF00593 TonB dependent receptor APY30_16085 PF07715 TonB-dependent Receptor Plug Domain APY30_16090 PF10431 C-terminal, D2-small domain, of ClpB protein APY30_16090 PF17871 AAA lid domain APY30_16090 PF02861 Clp amino terminal domain, pathogenicity island component APY30_16090 PF07724 AAA domain (Cdc48 subfamily) APY30_16090 PF00004 ATPase family associated with various cellular activities (AAA) APY30_16095 PF00005 ABC transporter APY30_16100 PF00528 Binding-protein-dependent transport system inner membrane component APY30_16105 PF09084 NMT1/THI5 like APY30_16110 PF00248 Aldo/keto reductase family APY30_16120 PF00593 TonB dependent receptor APY30_16120 PF07715 TonB-dependent Receptor Plug Domain APY30_16125 PF01541 GIY-YIG catalytic domain APY30_16160 PF00593 TonB dependent receptor APY30_16160 PF07715 TonB-dependent Receptor Plug Domain APY30_16165 PF02358 Trehalose-phosphatase APY30_16170 PF00723 Glycosyl hydrolases family 15 APY30_16175 PF00982 Glycosyltransferase family 20 APY30_16180 PF01011 PQQ enzyme repeat APY30_16185 PF02203 Tar ligand binding domain homologue APY30_16185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_16185 PF00672 HAMP domain APY30_16190 PF04134 Protein of unknown function, DUF393 APY30_16205 PF00849 RNA pseudouridylate synthase APY30_16210 PF13525 Outer membrane lipoprotein APY30_16220 PF02540 NAD synthase APY30_16220 PF00795 Carbon-nitrogen hydrolase APY30_16235 PF02629 CoA binding domain APY30_16235 PF00549 CoA-ligase APY30_16240 PF08442 ATP-grasp domain APY30_16240 PF00549 CoA-ligase APY30_16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_16245 PF00512 His Kinase A (phospho-acceptor) domain APY30_16255 PF02954 Bacterial regulatory protein, Fis family APY30_16255 PF00072 Response regulator receiver domain APY30_16255 PF00158 Sigma-54 interaction domain APY30_16260 PF00437 Type II/IV secretion system protein APY30_16260 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY30_16265 PF00437 Type II/IV secretion system protein APY30_16265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY30_16275 PF00482 Type II secretion system (T2SS), protein F APY30_16280 PF06750 Bacterial Peptidase A24 N-terminal domain APY30_16280 PF01478 Type IV leader peptidase family APY30_16285 PF01121 Dephospho-CoA kinase APY30_16305 PF13276 HTH-like domain APY30_16305 PF13683 Integrase core domain APY30_16310 PF01527 Transposase APY30_16320 PF00989 PAS fold APY30_16320 PF16736 Single Cache-like APY30_16320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_16320 PF00512 His Kinase A (phospho-acceptor) domain APY30_16325 PF00486 Transcriptional regulatory protein, C terminal APY30_16325 PF00072 Response regulator receiver domain APY30_16335 PF08443 RimK-like ATP-grasp domain APY30_16335 PF18030 RimK PreATP-grasp domain APY30_16340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY30_16340 PF00128 Alpha amylase, catalytic domain APY30_16425 PF04002 RadC-like JAB domain APY30_16455 PF00005 ABC transporter APY30_16500 PF00092 von Willebrand factor type A domain APY30_16520 PF03527 RHS protein APY30_16520 PF05593 RHS Repeat APY30_16540 PF00657 GDSL-like Lipase/Acylhydrolase APY30_16540 PF03797 Autotransporter beta-domain APY30_16550 PF05690 Thiazole biosynthesis protein ThiG APY30_16555 PF02390 Putative methyltransferase APY30_16560 PF03600 Citrate transporter APY30_16560 PF02080 TrkA-C domain APY30_16580 PF01741 Large-conductance mechanosensitive channel, MscL APY30_16595 PF00356 Bacterial regulatory proteins, lacI family APY30_16595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APY30_16600 PF01527 Transposase APY30_16605 PF00665 Integrase core domain APY30_16605 PF13333 Integrase core domain APY30_16605 PF13276 HTH-like domain APY30_16620 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY30_16620 PF00703 Glycosyl hydrolases family 2 APY30_16620 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain APY30_16625 PF10566 Glycoside hydrolase 97 APY30_16625 PF14508 Glycosyl-hydrolase 97 N-terminal APY30_16625 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation APY30_16635 PF00135 Carboxylesterase family APY30_16640 PF08032 RNA 2'-O ribose methyltransferase substrate binding APY30_16640 PF00588 SpoU rRNA Methylase family APY30_16650 PF01433 Peptidase family M1 domain APY30_16650 PF11838 ERAP1-like C-terminal domain APY30_16665 PF13276 HTH-like domain APY30_16665 PF00665 Integrase core domain APY30_16665 PF13333 Integrase core domain APY30_16680 PF00873 AcrB/AcrD/AcrF family APY30_16685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_16685 PF00529 HlyD membrane-fusion protein of T1SS APY30_16690 PF00009 Elongation factor Tu GTP binding domain APY30_16695 PF01507 Phosphoadenosine phosphosulfate reductase family APY30_16700 PF00175 Oxidoreductase NAD-binding domain APY30_16700 PF00667 FAD binding domain APY30_16700 PF00258 Flavodoxin APY30_16705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APY30_16705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APY30_16710 PF01507 Phosphoadenosine phosphosulfate reductase family APY30_16730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_16730 PF00512 His Kinase A (phospho-acceptor) domain APY30_16730 PF01627 Hpt domain APY30_16730 PF00072 Response regulator receiver domain APY30_16745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_16745 PF03466 LysR substrate binding domain APY30_16750 PF14824 Sirohaem biosynthesis protein central APY30_16750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY30_16750 PF10414 Sirohaem synthase dimerisation region APY30_16755 PF00291 Pyridoxal-phosphate dependent enzyme APY30_16765 PF01661 Macro domain APY30_16770 PF00274 Fructose-bisphosphate aldolase class-I APY30_16775 PF00224 Pyruvate kinase, barrel domain APY30_16775 PF02887 Pyruvate kinase, alpha/beta domain APY30_16785 PF00162 Phosphoglycerate kinase APY30_16805 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APY30_16805 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APY30_16815 PF03922 OmpW family APY30_16820 PF03922 OmpW family APY30_16830 PF00753 Metallo-beta-lactamase superfamily APY30_16830 PF04273 Putative phosphatase (DUF442) APY30_16840 PF00528 Binding-protein-dependent transport system inner membrane component APY30_16845 PF03459 TOBE domain APY30_16845 PF00005 ABC transporter APY30_16900 PF07715 TonB-dependent Receptor Plug Domain APY30_16900 PF00593 TonB dependent receptor APY30_16920 PF02780 Transketolase, C-terminal domain APY30_16920 PF00456 Transketolase, thiamine diphosphate binding domain APY30_16920 PF02779 Transketolase, pyrimidine binding domain APY30_16925 PF00375 Sodium:dicarboxylate symporter family APY30_16935 PF00092 von Willebrand factor type A domain APY30_16935 PF07584 Aerotolerance regulator N-terminal APY30_16955 PF07726 ATPase family associated with various cellular activities (AAA) APY30_16955 PF17863 AAA lid domain APY30_16960 PF07660 Secretin and TonB N terminus short domain APY30_16960 PF11741 AMIN domain APY30_16960 PF00263 Bacterial type II and III secretion system protein APY30_16960 PF03958 Bacterial type II/III secretion system short domain APY30_16985 PF17092 Penicillin-binding protein OB-like domain APY30_16985 PF00912 Transglycosylase APY30_16985 PF00905 Penicillin binding protein transpeptidase domain APY30_16995 PF00285 Citrate synthase, C-terminal domain APY30_17000 PF01197 Ribosomal protein L31 APY30_17005 PF01156 Inosine-uridine preferring nucleoside hydrolase APY30_17010 PF00271 Helicase conserved C-terminal domain APY30_17010 PF17191 RecG wedge domain APY30_17010 PF00270 DEAD/DEAH box helicase APY30_17015 PF01042 Endoribonuclease L-PSP APY30_17020 PF02824 TGS domain APY30_17020 PF04607 Region found in RelA / SpoT proteins APY30_17020 PF13291 ACT domain APY30_17025 PF01192 RNA polymerase Rpb6 APY30_17030 PF00625 Guanylate kinase APY30_17035 PF03755 YicC-like family, N-terminal region APY30_17035 PF08340 Domain of unknown function (DUF1732) APY30_17040 PF03725 3' exoribonuclease family, domain 2 APY30_17040 PF01138 3' exoribonuclease family, domain 1 APY30_17050 PF01725 Ham1 family APY30_17055 PF04055 Radical SAM superfamily APY30_17055 PF06969 HemN C-terminal domain APY30_17070 PF00557 Metallopeptidase family M24 APY30_17080 PF05195 Aminopeptidase P, N-terminal domain APY30_17080 PF00557 Metallopeptidase family M24 APY30_17085 PF03695 Uncharacterised protein family (UPF0149) APY30_17095 PF05164 Cell division protein ZapA APY30_17100 PF01812 5-formyltetrahydrofolate cyclo-ligase family APY30_17110 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APY30_17120 PF13369 Transglutaminase-like superfamily APY30_17125 PF00301 Rubredoxin APY30_17130 PF02581 Thiamine monophosphate synthase APY30_17140 PF00202 Aminotransferase class-III APY30_17145 PF00196 Bacterial regulatory proteins, luxR family APY30_17145 PF17874 MalT-like TPR region APY30_17150 PF00127 Copper binding proteins, plastocyanin/azurin family APY30_17155 PF00155 Aminotransferase class I and II APY30_17165 PF00034 Cytochrome c APY30_17165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APY30_17170 PF01593 Flavin containing amine oxidoreductase APY30_17185 PF00202 Aminotransferase class-III APY30_17190 PF00027 Cyclic nucleotide-binding domain APY30_17190 PF00520 Ion transport protein APY30_17205 PF01569 PAP2 superfamily APY30_17210 PF01062 Bestrophin, RFP-TM, chloride channel APY30_17220 PF08245 Mur ligase middle domain APY30_17220 PF02875 Mur ligase family, glutamate ligase domain APY30_17220 PF01225 Mur ligase family, catalytic domain APY30_17230 PF00365 Phosphofructokinase APY30_17240 PF13276 HTH-like domain APY30_17240 PF13333 Integrase core domain APY30_17240 PF00665 Integrase core domain APY30_17245 PF01527 Transposase APY30_17250 PF03030 Inorganic H+ pyrophosphatase APY30_17260 PF00719 Inorganic pyrophosphatase APY30_17270 PF07715 TonB-dependent Receptor Plug Domain APY30_17270 PF00593 TonB dependent receptor APY30_17275 PF12833 Helix-turn-helix domain APY30_17280 PF00486 Transcriptional regulatory protein, C terminal APY30_17280 PF18500 CadC C-terminal domain 1 APY30_17285 PF13667 ThiC-associated domain APY30_17285 PF01964 Radical SAM ThiC family APY30_17290 PF00593 TonB dependent receptor APY30_17290 PF07715 TonB-dependent Receptor Plug Domain APY30_17295 PF00672 HAMP domain APY30_17295 PF02203 Tar ligand binding domain homologue APY30_17295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_17305 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APY30_17305 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APY30_17310 PF00205 Thiamine pyrophosphate enzyme, central domain APY30_17310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APY30_17310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APY30_17320 PF00291 Pyridoxal-phosphate dependent enzyme APY30_17325 PF08502 LeuA allosteric (dimerisation) domain APY30_17325 PF00682 HMGL-like APY30_17330 PF00180 Isocitrate/isopropylmalate dehydrogenase APY30_17335 PF00694 Aconitase C-terminal domain APY30_17340 PF00330 Aconitase family (aconitate hydratase) APY30_17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_17350 PF00990 Diguanylate cyclase, GGDEF domain APY30_17350 PF17151 Periplasmic sensor domain APY30_17365 PF02321 Outer membrane efflux protein APY30_17370 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APY30_17375 PF03279 Bacterial lipid A biosynthesis acyltransferase APY30_17400 PF01515 Phosphate acetyl/butaryl transferase APY30_17400 PF03949 Malic enzyme, NAD binding domain APY30_17400 PF00390 Malic enzyme, N-terminal domain APY30_17405 PF00375 Sodium:dicarboxylate symporter family APY30_17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_17420 PF00512 His Kinase A (phospho-acceptor) domain APY30_17420 PF02743 Cache domain APY30_17425 PF07690 Major Facilitator Superfamily APY30_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_17435 PF03466 LysR substrate binding domain APY30_17445 PF00248 Aldo/keto reductase family APY30_17460 PF00196 Bacterial regulatory proteins, luxR family APY30_17460 PF00072 Response regulator receiver domain APY30_17470 PF08521 Two-component sensor kinase N-terminal APY30_17470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_17470 PF00512 His Kinase A (phospho-acceptor) domain APY30_17475 PF00072 Response regulator receiver domain APY30_17475 PF00486 Transcriptional regulatory protein, C terminal APY30_17485 PF03600 Citrate transporter APY30_17490 PF00106 short chain dehydrogenase APY30_17495 PF00356 Bacterial regulatory proteins, lacI family APY30_17510 PF00128 Alpha amylase, catalytic domain APY30_17525 PF03193 RsgA GTPase APY30_17540 PF00171 Aldehyde dehydrogenase family APY30_17545 PF00501 AMP-binding enzyme APY30_17545 PF13193 AMP-binding enzyme C-terminal domain APY30_17550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_17550 PF03466 LysR substrate binding domain APY30_17555 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY30_17555 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit APY30_17560 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APY30_17565 PF00392 Bacterial regulatory proteins, gntR family APY30_17565 PF07729 FCD domain APY30_17585 PF01494 FAD binding domain APY30_17590 PF01494 FAD binding domain APY30_17600 PF01923 Cobalamin adenosyltransferase APY30_17605 PF00850 Histone deacetylase domain APY30_17615 PF03968 OstA-like protein APY30_17615 PF04453 LPS transport system D APY30_17620 PF09312 SurA N-terminal domain APY30_17620 PF00639 PPIC-type PPIASE domain APY30_17625 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APY30_17630 PF00398 Ribosomal RNA adenine dimethylase APY30_17635 PF04379 ApaG domain APY30_17640 PF00149 Calcineurin-like phosphoesterase APY30_17645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APY30_17645 PF00005 ABC transporter APY30_17650 PF12911 N-terminal TM domain of oligopeptide transport permease C APY30_17650 PF00528 Binding-protein-dependent transport system inner membrane component APY30_17655 PF00528 Binding-protein-dependent transport system inner membrane component APY30_17660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APY30_17665 PF00296 Luciferase-like monooxygenase APY30_17685 PF03358 NADPH-dependent FMN reductase APY30_17690 PF00296 Luciferase-like monooxygenase APY30_17700 PF00528 Binding-protein-dependent transport system inner membrane component APY30_17705 PF00005 ABC transporter APY30_17710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_17710 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APY30_17715 PF00158 Sigma-54 interaction domain APY30_17720 PF00186 Dihydrofolate reductase APY30_17730 PF00303 Thymidylate synthase APY30_17735 PF01790 Prolipoprotein diacylglyceryl transferase APY30_17755 PF01219 Prokaryotic diacylglycerol kinase APY30_17770 PF00486 Transcriptional regulatory protein, C terminal APY30_17770 PF00072 Response regulator receiver domain APY30_17775 PF13472 GDSL-like Lipase/Acylhydrolase family APY30_17780 PF00005 ABC transporter APY30_17790 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APY30_17800 PF00005 ABC transporter APY30_17805 PF00528 Binding-protein-dependent transport system inner membrane component APY30_17825 PF00593 TonB dependent receptor APY30_17825 PF07715 TonB-dependent Receptor Plug Domain APY30_17835 PF00248 Aldo/keto reductase family APY30_17840 PF07662 Na+ dependent nucleoside transporter C-terminus APY30_17840 PF07670 Nucleoside recognition APY30_17840 PF01773 Na+ dependent nucleoside transporter N-terminus APY30_17845 PF00294 pfkB family carbohydrate kinase APY30_17855 PF01207 Dihydrouridine synthase (Dus) APY30_17860 PF13649 Methyltransferase domain APY30_17870 PF00438 S-adenosylmethionine synthetase, N-terminal domain APY30_17870 PF02772 S-adenosylmethionine synthetase, central domain APY30_17870 PF02773 S-adenosylmethionine synthetase, C-terminal domain APY30_17875 PF00328 Histidine phosphatase superfamily (branch 2) APY30_17905 PF00311 Phosphoenolpyruvate carboxylase APY30_17915 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APY30_17915 PF05221 S-adenosyl-L-homocysteine hydrolase APY30_17950 PF00128 Alpha amylase, catalytic domain APY30_17955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY30_17975 PF08240 Alcohol dehydrogenase GroES-like domain APY30_17975 PF00698 Acyl transferase domain APY30_17975 PF16197 Ketoacyl-synthetase C-terminal extension APY30_17975 PF00109 Beta-ketoacyl synthase, N-terminal domain APY30_17975 PF02801 Beta-ketoacyl synthase, C-terminal domain APY30_17975 PF08659 KR domain APY30_17975 PF00550 Phosphopantetheine attachment site APY30_17975 PF14765 Polyketide synthase dehydratase APY30_17975 PF00107 Zinc-binding dehydrogenase APY30_17985 PF02219 Methylenetetrahydrofolate reductase APY30_17995 PF00293 NUDIX domain APY30_18000 PF07516 SecA Wing and Scaffold domain APY30_18000 PF02810 SEC-C motif APY30_18000 PF01043 SecA preprotein cross-linking domain APY30_18000 PF07517 SecA DEAD-like domain APY30_18005 PF08525 Opacity-associated protein A N-terminal motif APY30_18005 PF01476 LysM domain APY30_18005 PF01551 Peptidase family M23 APY30_18015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APY30_18020 PF12327 FtsZ family, C-terminal domain APY30_18020 PF00091 Tubulin/FtsZ family, GTPase domain APY30_18025 PF02491 SHS2 domain inserted in FTSA APY30_18030 PF03799 Cell division protein FtsQ APY30_18030 PF08478 POTRA domain, FtsQ-type APY30_18035 PF07478 D-ala D-ala ligase C-terminus APY30_18035 PF01820 D-ala D-ala ligase N-terminus APY30_18040 PF01225 Mur ligase family, catalytic domain APY30_18040 PF02875 Mur ligase family, glutamate ligase domain APY30_18040 PF08245 Mur ligase middle domain APY30_18045 PF03033 Glycosyltransferase family 28 N-terminal domain APY30_18045 PF04101 Glycosyltransferase family 28 C-terminal domain APY30_18050 PF01098 Cell cycle protein APY30_18055 PF00953 Glycosyl transferase family 4 APY30_18060 PF01225 Mur ligase family, catalytic domain APY30_18060 PF08245 Mur ligase middle domain APY30_18060 PF02875 Mur ligase family, glutamate ligase domain APY30_18065 PF01225 Mur ligase family, catalytic domain APY30_18065 PF02875 Mur ligase family, glutamate ligase domain APY30_18065 PF08245 Mur ligase middle domain APY30_18070 PF00905 Penicillin binding protein transpeptidase domain APY30_18070 PF03717 Penicillin-binding Protein dimerisation domain APY30_18075 PF04999 Cell division protein FtsL APY30_18080 PF01795 MraW methylase family APY30_18085 PF02381 MraZ protein, putative antitoxin-like APY30_18100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APY30_18110 PF02021 Uncharacterised protein family UPF0102 APY30_18115 PF04307 LexA-binding, inner membrane-associated putative hydrolase APY30_18120 PF02913 FAD linked oxidases, C-terminal domain APY30_18120 PF01565 FAD binding domain APY30_18135 PF00486 Transcriptional regulatory protein, C terminal APY30_18135 PF00072 Response regulator receiver domain APY30_18140 PF02702 Osmosensitive K+ channel His kinase sensor domain APY30_18140 PF00512 His Kinase A (phospho-acceptor) domain APY30_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_18140 PF13492 GAF domain APY30_18140 PF13493 Domain of unknown function (DUF4118) APY30_18145 PF02669 K+-transporting ATPase, c chain APY30_18155 PF03814 Potassium-transporting ATPase A subunit APY30_18175 PF02769 AIR synthase related protein, C-terminal domain APY30_18175 PF00586 AIR synthase related protein, N-terminal domain APY30_18180 PF01029 NusB family APY30_18185 PF00885 6,7-dimethyl-8-ribityllumazine synthase APY30_18190 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APY30_18190 PF00925 GTP cyclohydrolase II APY30_18195 PF00677 Lumazine binding domain APY30_18215 PF01872 RibD C-terminal domain APY30_18215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APY30_18225 PF03477 ATP cone domain APY30_18230 PF00464 Serine hydroxymethyltransferase APY30_18240 PF00005 ABC transporter APY30_18240 PF12848 ABC transporter APY30_18250 PF00892 EamA-like transporter family APY30_18255 PF02567 Phenazine biosynthesis-like protein APY30_18260 PF00392 Bacterial regulatory proteins, gntR family APY30_18260 PF00155 Aminotransferase class I and II APY30_18270 PF00756 Putative esterase APY30_18275 PF04828 Glutathione-dependent formaldehyde-activating enzyme APY30_18280 PF08240 Alcohol dehydrogenase GroES-like domain APY30_18280 PF00107 Zinc-binding dehydrogenase APY30_18285 PF02583 Metal-sensitive transcriptional repressor APY30_18300 PF00072 Response regulator receiver domain APY30_18300 PF00486 Transcriptional regulatory protein, C terminal APY30_18305 PF00512 His Kinase A (phospho-acceptor) domain APY30_18305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_18305 PF00672 HAMP domain APY30_18310 PF04107 Glutamate-cysteine ligase family 2(GCS2) APY30_18325 PF01926 50S ribosome-binding GTPase APY30_18330 PF00034 Cytochrome c APY30_18340 PF01323 DSBA-like thioredoxin domain APY30_18350 PF02028 BCCT, betaine/carnitine/choline family transporter APY30_18355 PF00171 Aldehyde dehydrogenase family APY30_18360 PF05199 GMC oxidoreductase APY30_18360 PF00732 GMC oxidoreductase APY30_18365 PF01966 HD domain APY30_18365 PF01743 Poly A polymerase head domain APY30_18365 PF12627 Probable RNA and SrmB- binding site of polymerase A APY30_18375 PF01979 Amidohydrolase family APY30_18380 PF01380 SIS domain APY30_18385 PF00356 Bacterial regulatory proteins, lacI family APY30_18390 PF07690 Major Facilitator Superfamily APY30_18410 PF00703 Glycosyl hydrolases family 2 APY30_18410 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY30_18410 PF16355 Domain of unknown function (DUF4982) APY30_18410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY30_18410 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 APY30_18435 PF03934 Type II secretion system (T2SS), protein K APY30_18440 PF11612 Type II secretion system (T2SS), protein J APY30_18440 PF07963 Prokaryotic N-terminal methylation motif APY30_18445 PF02501 Type II secretion system (T2SS), protein I APY30_18445 PF07963 Prokaryotic N-terminal methylation motif APY30_18450 PF12019 Type II transport protein GspH APY30_18450 PF07963 Prokaryotic N-terminal methylation motif APY30_18455 PF08334 Type II secretion system (T2SS), protein G APY30_18455 PF07963 Prokaryotic N-terminal methylation motif APY30_18460 PF00482 Type II secretion system (T2SS), protein F APY30_18465 PF00437 Type II/IV secretion system protein APY30_18470 PF00263 Bacterial type II and III secretion system protein APY30_18470 PF03958 Bacterial type II/III secretion system short domain APY30_18515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APY30_18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_18520 PF00512 His Kinase A (phospho-acceptor) domain APY30_18525 PF00072 Response regulator receiver domain APY30_18530 PF08446 PAS fold APY30_18530 PF00360 Phytochrome region APY30_18530 PF00512 His Kinase A (phospho-acceptor) domain APY30_18530 PF01590 GAF domain APY30_18530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_18535 PF04972 BON domain APY30_18540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APY30_18540 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APY30_18545 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APY30_18545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY30_18580 PF00293 NUDIX domain APY30_18580 PF01467 Cytidylyltransferase-like APY30_18590 PF03466 LysR substrate binding domain APY30_18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_18600 PF03572 Peptidase family S41 APY30_18600 PF00595 PDZ domain APY30_18600 PF11818 C-terminal domain of tail specific protease (DUF3340) APY30_18600 PF17804 Tail specific protease N-terminal domain APY30_18605 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family APY30_18605 PF04055 Radical SAM superfamily APY30_18610 PF03099 Biotin/lipoate A/B protein ligase family APY30_18615 PF04359 Protein of unknown function (DUF493) APY30_18625 PF07943 Penicillin-binding protein 5, C-terminal domain APY30_18625 PF00768 D-alanyl-D-alanine carboxypeptidase APY30_18635 PF03330 Lytic transglycolase APY30_18635 PF05036 Sporulation related domain APY30_18640 PF13406 Transglycosylase SLT domain APY30_18645 PF00295 Glycosyl hydrolases family 28 APY30_18650 PF01098 Cell cycle protein APY30_18655 PF00905 Penicillin binding protein transpeptidase domain APY30_18655 PF03717 Penicillin-binding Protein dimerisation domain APY30_18665 PF04085 rod shape-determining protein MreC APY30_18675 PF00294 pfkB family carbohydrate kinase APY30_18680 PF00158 Sigma-54 interaction domain APY30_18680 PF02954 Bacterial regulatory protein, Fis family APY30_18680 PF01590 GAF domain APY30_18690 PF00107 Zinc-binding dehydrogenase APY30_18690 PF08240 Alcohol dehydrogenase GroES-like domain APY30_18705 PF00497 Bacterial extracellular solute-binding proteins, family 3 APY30_18710 PF13360 PQQ-like domain APY30_18730 PF11838 ERAP1-like C-terminal domain APY30_18730 PF01433 Peptidase family M1 domain APY30_18735 PF00563 EAL domain APY30_18735 PF03707 Bacterial signalling protein N terminal repeat APY30_18735 PF00990 Diguanylate cyclase, GGDEF domain APY30_18740 PF01209 ubiE/COQ5 methyltransferase family APY30_18750 PF13533 Biotin-lipoyl like APY30_18755 PF13673 Acetyltransferase (GNAT) domain APY30_18765 PF07724 AAA domain (Cdc48 subfamily) APY30_18765 PF00004 ATPase family associated with various cellular activities (AAA) APY30_18765 PF10431 C-terminal, D2-small domain, of ClpB protein APY30_18770 PF00227 Proteasome subunit APY30_18775 PF00589 Phage integrase family APY30_18775 PF02899 Phage integrase, N-terminal SAM-like domain APY30_18790 PF01678 Diaminopimelate epimerase APY30_18800 PF04304 Protein of unknown function (DUF454) APY30_18805 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APY30_18805 PF00326 Prolyl oligopeptidase family APY30_18810 PF00155 Aminotransferase class I and II APY30_18820 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APY30_18820 PF00326 Prolyl oligopeptidase family APY30_18845 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APY30_18845 PF03900 Porphobilinogen deaminase, C-terminal domain APY30_18850 PF00072 Response regulator receiver domain APY30_18850 PF04397 LytTr DNA-binding domain APY30_18855 PF07694 5TMR of 5TMR-LYT APY30_18855 PF06580 Histidine kinase APY30_18865 PF13632 Glycosyl transferase family group 2 APY30_18880 PF00990 Diguanylate cyclase, GGDEF domain APY30_18880 PF08448 PAS fold APY30_18885 PF01740 STAS domain APY30_18885 PF00916 Sulfate permease family APY30_18890 PF00553 Cellulose binding domain APY30_18890 PF00150 Cellulase (glycosyl hydrolase family 5) APY30_18895 PF00672 HAMP domain APY30_18895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APY30_18895 PF02203 Tar ligand binding domain homologue APY30_18900 PF08448 PAS fold APY30_18900 PF08447 PAS fold APY30_18900 PF00990 Diguanylate cyclase, GGDEF domain APY30_18900 PF00563 EAL domain APY30_18925 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APY30_18925 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APY30_18935 PF01204 Trehalase APY30_18945 PF01544 CorA-like Mg2+ transporter protein APY30_18955 PF00324 Amino acid permease APY30_18965 PF00497 Bacterial extracellular solute-binding proteins, family 3 APY30_18970 PF00892 EamA-like transporter family APY30_18990 PF00990 Diguanylate cyclase, GGDEF domain APY30_18990 PF05230 MASE2 domain APY30_18995 PF07759 Protein of unknown function (DUF1615) APY30_19005 PF00326 Prolyl oligopeptidase family APY30_19005 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APY30_19010 PF12823 Domain of unknown function (DUF3817) APY30_19010 PF03176 MMPL family APY30_19025 PF13333 Integrase core domain APY30_19025 PF13276 HTH-like domain APY30_19025 PF00665 Integrase core domain APY30_19030 PF01527 Transposase APY30_19045 PF13409 Glutathione S-transferase, N-terminal domain APY30_19055 PF00106 short chain dehydrogenase APY30_19070 PF00106 short chain dehydrogenase APY30_19110 PF00456 Transketolase, thiamine diphosphate binding domain APY30_19110 PF17831 Pyruvate dehydrogenase E1 component middle domain APY30_19115 PF07745 Glycosyl hydrolase family 53 APY30_19145 PF13419 Haloacid dehalogenase-like hydrolase APY30_19150 PF07729 FCD domain APY30_19150 PF00392 Bacterial regulatory proteins, gntR family APY30_19160 PF00698 Acyl transferase domain APY30_19165 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase APY30_19170 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG APY30_19180 PF01039 Carboxyl transferase domain APY30_19185 PF06857 Malonate decarboxylase delta subunit (MdcD) APY30_19190 PF16957 Malonate decarboxylase, alpha subunit, transporter APY30_19215 PF04264 YceI-like domain APY30_19220 PF00881 Nitroreductase family APY30_19240 PF02592 Putative vitamin uptake transporter APY30_19245 PF08335 GlnD PII-uridylyltransferase APY30_19245 PF03710 Glutamate-ammonia ligase adenylyltransferase APY30_19255 PF08450 SMP-30/Gluconolactonase/LRE-like region APY30_19270 PF00793 DAHP synthetase I family APY30_19285 PF00118 TCP-1/cpn60 chaperonin family APY30_19290 PF00166 Chaperonin 10 Kd subunit APY30_19295 PF04231 Endonuclease I APY30_19300 PF00106 short chain dehydrogenase APY30_19310 PF01852 START domain APY30_19325 PF03091 CutA1 divalent ion tolerance protein APY30_19330 PF02683 Cytochrome C biogenesis protein transmembrane region APY30_19330 PF11412 Disulphide bond corrector protein DsbC APY30_19335 PF01220 Dehydroquinase class II APY30_19340 PF00364 Biotin-requiring enzyme APY30_19350 PF00289 Biotin carboxylase, N-terminal domain APY30_19350 PF02785 Biotin carboxylase C-terminal domain APY30_19350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY30_19365 PF01527 Transposase APY30_19370 PF00665 Integrase core domain APY30_19370 PF13333 Integrase core domain APY30_19370 PF13276 HTH-like domain APY30_19385 PF01381 Helix-turn-helix APY30_19400 PF02954 Bacterial regulatory protein, Fis family APY30_19430 PF00782 Dual specificity phosphatase, catalytic domain APY30_19435 PF12146 Serine aminopeptidase, S33 APY30_19435 PF12147 Putative methyltransferase APY30_19440 PF01066 CDP-alcohol phosphatidyltransferase APY30_19445 PF02142 MGS-like domain APY30_19445 PF01808 AICARFT/IMPCHase bienzyme APY30_19455 PF02844 Phosphoribosylglycinamide synthetase, N domain APY30_19455 PF02843 Phosphoribosylglycinamide synthetase, C domain APY30_19455 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APY30_19465 PF12805 FUSC-like inner membrane protein yccS APY30_19470 PF07690 Major Facilitator Superfamily APY30_19480 PF07690 Major Facilitator Superfamily APY30_19495 PF17113 Regulatory signalling modulator protein AmpE APY30_19495 PF03186 CobD/Cbib protein APY30_19500 PF00293 NUDIX domain APY30_19500 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APY30_19500 PF09297 NADH pyrophosphatase zinc ribbon domain APY30_19515 PF01521 Iron-sulphur cluster biosynthesis APY30_19535 PF00072 Response regulator receiver domain APY30_19535 PF00486 Transcriptional regulatory protein, C terminal APY30_19540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APY30_19540 PF00072 Response regulator receiver domain APY30_19540 PF00672 HAMP domain APY30_19540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_19540 PF00512 His Kinase A (phospho-acceptor) domain APY30_19540 PF01627 Hpt domain APY30_19545 PF00210 Ferritin-like domain APY30_19555 PF00293 NUDIX domain APY30_19570 PF00380 Ribosomal protein S9/S16 APY30_19575 PF00572 Ribosomal protein L13 APY30_19580 PF03232 Ubiquinone biosynthesis protein COQ7 APY30_19585 PF00893 Small Multidrug Resistance protein APY30_19590 PF02675 S-adenosylmethionine decarboxylase APY30_19595 PF00325 Bacterial regulatory proteins, crp family APY30_19595 PF00027 Cyclic nucleotide-binding domain APY30_19605 PF00218 Indole-3-glycerol phosphate synthase APY30_19610 PF02885 Glycosyl transferase family, helical bundle domain APY30_19610 PF00591 Glycosyl transferase family, a/b domain APY30_19620 PF00117 Glutamine amidotransferase class-I APY30_19630 PF04715 Anthranilate synthase component I, N terminal region APY30_19630 PF00425 chorismate binding enzyme APY30_19635 PF00781 Diacylglycerol kinase catalytic domain APY30_19640 PF00583 Acetyltransferase (GNAT) family APY30_19645 PF00834 Ribulose-phosphate 3 epimerase family APY30_19655 PF05099 Tellurite resistance protein TerB APY30_19655 PF00226 DnaJ domain APY30_19660 PF01259 SAICAR synthetase APY30_19685 PF00665 Integrase core domain APY30_19685 PF13333 Integrase core domain APY30_19685 PF13276 HTH-like domain APY30_19690 PF01527 Transposase APY30_19700 PF07504 Fungalysin/Thermolysin Propeptide Motif APY30_19700 PF01483 Proprotein convertase P-domain APY30_19700 PF01447 Thermolysin metallopeptidase, catalytic domain APY30_19700 PF02868 Thermolysin metallopeptidase, alpha-helical domain APY30_19715 PF13244 Domain of unknown function (DUF4040) APY30_19715 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APY30_19715 PF00361 Proton-conducting membrane transporter APY30_19715 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter APY30_19720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APY30_19725 PF00361 Proton-conducting membrane transporter APY30_19735 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) APY30_19740 PF03334 Na+/H+ antiporter subunit APY30_19755 PF04209 homogentisate 1,2-dioxygenase APY30_19760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APY30_19765 PF01047 MarR family APY30_19775 PF00854 POT family APY30_19780 PF03301 Tryptophan 2,3-dioxygenase APY30_19790 PF00676 Dehydrogenase E1 component APY30_19795 PF02779 Transketolase, pyrimidine binding domain APY30_19795 PF02780 Transketolase, C-terminal domain APY30_19805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APY30_19805 PF02817 e3 binding domain APY30_19805 PF00364 Biotin-requiring enzyme APY30_19810 PF00270 DEAD/DEAH box helicase APY30_19810 PF00271 Helicase conserved C-terminal domain APY30_19825 PF00873 AcrB/AcrD/AcrF family APY30_19845 PF06903 VirK protein APY30_19865 PF13460 NAD(P)H-binding APY30_19870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY30_19870 PF00128 Alpha amylase, catalytic domain APY30_19880 PF00128 Alpha amylase, catalytic domain APY30_19885 PF02446 4-alpha-glucanotransferase APY30_19890 PF00128 Alpha amylase, catalytic domain APY30_19890 PF11941 Domain of unknown function (DUF3459) APY30_19890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY30_19895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APY30_19895 PF00128 Alpha amylase, catalytic domain APY30_19895 PF02806 Alpha amylase, C-terminal all-beta domain APY30_19900 PF00534 Glycosyl transferases group 1 APY30_19900 PF08323 Starch synthase catalytic domain APY30_19905 PF00990 Diguanylate cyclase, GGDEF domain APY30_19905 PF00072 Response regulator receiver domain APY30_19910 PF05661 Protein of unknown function (DUF808) APY30_19915 PF03109 ABC1 family APY30_19920 PF00884 Sulfatase APY30_19925 PF12795 Mechanosensitive ion channel porin domain APY30_19925 PF12794 Mechanosensitive ion channel inner membrane domain 1 APY30_19925 PF00924 Mechanosensitive ion channel APY30_19945 PF01464 Transglycosylase SLT domain APY30_19960 PF01311 Bacterial export proteins, family 1 APY30_19970 PF18269 T3SS EscN ATPase C-terminal domain APY30_19970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APY30_19970 PF02874 ATP synthase alpha/beta family, beta-barrel domain APY30_19985 PF01514 Secretory protein of YscJ/FliF family APY30_20000 PF01312 FlhB HrpN YscU SpaS Family APY30_20005 PF00771 FHIPEP family APY30_20020 PF00813 FliP family APY30_20025 PF01313 Bacterial export proteins, family 3 APY30_20060 PF05819 NolX protein APY30_20070 PF01040 UbiA prenyltransferase family APY30_20080 PF06968 Biotin and Thiamin Synthesis associated domain APY30_20080 PF04055 Radical SAM superfamily APY30_20085 PF00155 Aminotransferase class I and II APY30_20095 PF12697 Alpha/beta hydrolase family APY30_20105 PF13649 Methyltransferase domain APY30_20125 PF00291 Pyridoxal-phosphate dependent enzyme APY30_20135 PF01134 Glucose inhibited division protein A APY30_20135 PF13932 GidA associated domain APY30_20140 PF10677 Protein of unknown function (DUF2490) APY30_20155 PF09339 IclR helix-turn-helix domain APY30_20155 PF01614 Bacterial transcriptional regulator APY30_20165 PF02627 Carboxymuconolactone decarboxylase family APY30_20170 PF12146 Serine aminopeptidase, S33 APY30_20175 PF00206 Lyase APY30_20175 PF10397 Adenylosuccinate lyase C-terminus APY30_20180 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal APY30_20180 PF00775 Dioxygenase APY30_20190 PF02803 Thiolase, C-terminal domain APY30_20190 PF00108 Thiolase, N-terminal domain APY30_20195 PF01144 Coenzyme A transferase APY30_20200 PF01144 Coenzyme A transferase APY30_20205 PF00355 Rieske [2Fe-2S] domain APY30_20215 PF00455 DeoR C terminal sensor domain APY30_20215 PF08220 DeoR-like helix-turn-helix domain APY30_20220 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APY30_20220 PF01266 FAD dependent oxidoreductase APY30_20225 PF00230 Major intrinsic protein APY30_20230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY30_20230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY30_20240 PF01494 FAD binding domain APY30_20250 PF00171 Aldehyde dehydrogenase family APY30_20270 PF01966 HD domain APY30_20270 PF11871 Domain of unknown function (DUF3391) APY30_20275 PF07690 Major Facilitator Superfamily APY30_20285 PF00132 Bacterial transferase hexapeptide (six repeats) APY30_20305 PF00920 Dehydratase family APY30_20310 PF13495 Phage integrase, N-terminal SAM-like domain APY30_20310 PF00589 Phage integrase family APY30_20320 PF13276 HTH-like domain APY30_20320 PF13333 Integrase core domain APY30_20320 PF00665 Integrase core domain APY30_20360 PF01638 HxlR-like helix-turn-helix APY30_20365 PF05368 NmrA-like family APY30_20385 PF03812 2-keto-3-deoxygluconate permease APY30_20390 PF08267 Cobalamin-independent synthase, N-terminal domain APY30_20390 PF01717 Cobalamin-independent synthase, Catalytic domain APY30_20400 PF03358 NADPH-dependent FMN reductase APY30_20405 PF03466 LysR substrate binding domain APY30_20405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_20410 PF02677 Epoxyqueuosine reductase QueH APY30_20425 PF02321 Outer membrane efflux protein APY30_20435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_20435 PF00529 HlyD membrane-fusion protein of T1SS APY30_20440 PF00512 His Kinase A (phospho-acceptor) domain APY30_20440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_20440 PF00672 HAMP domain APY30_20445 PF00072 Response regulator receiver domain APY30_20445 PF00486 Transcriptional regulatory protein, C terminal APY30_20450 PF00551 Formyl transferase APY30_20460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APY30_20460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APY30_20465 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APY30_20470 PF02146 Sir2 family APY30_20485 PF07690 Major Facilitator Superfamily APY30_20495 PF01527 Transposase APY30_20500 PF13683 Integrase core domain APY30_20500 PF13276 HTH-like domain APY30_20515 PF01026 TatD related DNase APY30_20520 PF03466 LysR substrate binding domain APY30_20520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_20525 PF00355 Rieske [2Fe-2S] domain APY30_20530 PF00111 2Fe-2S iron-sulfur cluster binding domain APY30_20535 PF00860 Permease family APY30_20545 PF01156 Inosine-uridine preferring nucleoside hydrolase APY30_20550 PF01425 Amidase APY30_20565 PF07690 Major Facilitator Superfamily APY30_20570 PF03466 LysR substrate binding domain APY30_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_20575 PF07687 Peptidase dimerisation domain APY30_20575 PF01546 Peptidase family M20/M25/M40 APY30_20580 PF00266 Aminotransferase class-V APY30_20595 PF09349 OHCU decarboxylase APY30_20595 PF01014 Uricase APY30_20600 PF13454 FAD-NAD(P)-binding APY30_20605 PF00576 HIUase/Transthyretin family APY30_20610 PF07308 Protein of unknown function (DUF1456) APY30_20615 PF04408 Helicase associated domain (HA2) APY30_20615 PF08482 ATP-dependent helicase C-terminal APY30_20615 PF00270 DEAD/DEAH box helicase APY30_20615 PF00271 Helicase conserved C-terminal domain APY30_20625 PF00593 TonB dependent receptor APY30_20630 PF00849 RNA pseudouridylate synthase APY30_20645 PF00107 Zinc-binding dehydrogenase APY30_20645 PF16884 N-terminal domain of oxidoreductase APY30_20675 PF02566 OsmC-like protein APY30_20680 PF01047 MarR family APY30_20685 PF03969 AFG1-like ATPase APY30_20765 PF02534 Type IV secretory system Conjugative DNA transfer APY30_20910 PF02770 Acyl-CoA dehydrogenase, middle domain APY30_20910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APY30_20910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APY30_20915 PF01039 Carboxyl transferase domain APY30_20920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY30_20920 PF02785 Biotin carboxylase C-terminal domain APY30_20920 PF00364 Biotin-requiring enzyme APY30_20920 PF00289 Biotin carboxylase, N-terminal domain APY30_20925 PF00326 Prolyl oligopeptidase family APY30_20945 PF00990 Diguanylate cyclase, GGDEF domain APY30_20950 PF00463 Isocitrate lyase family APY30_20955 PF01274 Malate synthase APY30_20965 PF00999 Sodium/hydrogen exchanger family APY30_20990 PF12706 Beta-lactamase superfamily domain APY30_20995 PF01432 Peptidase family M3 APY30_21000 PF01112 Asparaginase APY30_21010 PF00472 RF-1 domain APY30_21020 PF00849 RNA pseudouridylate synthase APY30_21030 PF03109 ABC1 family APY30_21040 PF07478 D-ala D-ala ligase C-terminus APY30_21040 PF01820 D-ala D-ala ligase N-terminus APY30_21055 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family APY30_21060 PF00501 AMP-binding enzyme APY30_21065 PF03692 Putative zinc- or iron-chelating domain APY30_21070 PF00561 alpha/beta hydrolase fold APY30_21080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APY30_21080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APY30_21095 PF00588 SpoU rRNA Methylase family APY30_21100 PF07690 Major Facilitator Superfamily APY30_21115 PF00158 Sigma-54 interaction domain APY30_21115 PF00072 Response regulator receiver domain APY30_21115 PF02954 Bacterial regulatory protein, Fis family APY30_21120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_21125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APY30_21125 PF00205 Thiamine pyrophosphate enzyme, central domain APY30_21125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APY30_21135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APY30_21135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APY30_21140 PF02556 Preprotein translocase subunit SecB APY30_21145 PF00581 Rhodanese-like domain APY30_21180 PF02803 Thiolase, C-terminal domain APY30_21180 PF00108 Thiolase, N-terminal domain APY30_21195 PF00080 Copper/zinc superoxide dismutase (SODC) APY30_21200 PF00080 Copper/zinc superoxide dismutase (SODC) APY30_21205 PF00072 Response regulator receiver domain APY30_21205 PF02954 Bacterial regulatory protein, Fis family APY30_21205 PF00158 Sigma-54 interaction domain APY30_21210 PF00989 PAS fold APY30_21210 PF00512 His Kinase A (phospho-acceptor) domain APY30_21210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_21215 PF00909 Ammonium Transporter Family APY30_21220 PF00543 Nitrogen regulatory protein P-II APY30_21225 PF03951 Glutamine synthetase, beta-Grasp domain APY30_21225 PF00120 Glutamine synthetase, catalytic domain APY30_21230 PF02673 Bacitracin resistance protein BacA APY30_21240 PF01161 Phosphatidylethanolamine-binding protein APY30_21265 PF03061 Thioesterase superfamily APY30_21270 PF13091 PLD-like domain APY30_21285 PF10609 NUBPL iron-transfer P-loop NTPase APY30_21285 PF01883 Iron-sulfur cluster assembly protein APY30_21310 PF01381 Helix-turn-helix APY30_21330 PF03781 Sulfatase-modifying factor enzyme 1 APY30_21330 PF12867 DinB superfamily APY30_21340 PF00528 Binding-protein-dependent transport system inner membrane component APY30_21345 PF00005 ABC transporter APY30_21360 PF00005 ABC transporter APY30_21370 PF01734 Patatin-like phospholipase APY30_21375 PF07715 TonB-dependent Receptor Plug Domain APY30_21375 PF00593 TonB dependent receptor APY30_21375 PF07660 Secretin and TonB N terminus short domain APY30_21380 PF01037 Lrp/AsnC ligand binding domain APY30_21385 PF00351 Biopterin-dependent aromatic amino acid hydroxylase APY30_21400 PF00657 GDSL-like Lipase/Acylhydrolase APY30_21415 PF04962 KduI/IolB family APY30_21420 PF00356 Bacterial regulatory proteins, lacI family APY30_21425 PF04616 Glycosyl hydrolases family 43 APY30_21425 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain APY30_21430 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component APY30_21440 PF03480 Bacterial extracellular solute-binding protein, family 7 APY30_21450 PF07859 alpha/beta hydrolase fold APY30_21450 PF13472 GDSL-like Lipase/Acylhydrolase family APY30_21455 PF00135 Carboxylesterase family APY30_21460 PF00248 Aldo/keto reductase family APY30_21480 PF04357 TamB, inner membrane protein subunit of TAM complex APY30_21485 PF17243 POTRA domain TamA domain 1 APY30_21485 PF01103 Surface antigen APY30_21490 PF07715 TonB-dependent Receptor Plug Domain APY30_21490 PF00593 TonB dependent receptor APY30_21495 PF13181 Tetratricopeptide repeat APY30_21500 PF02092 Glycyl-tRNA synthetase beta subunit APY30_21500 PF05746 DALR anticodon binding domain APY30_21505 PF02091 Glycyl-tRNA synthetase alpha subunit APY30_21510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APY30_21510 PF00437 Type II/IV secretion system protein APY30_21520 PF00117 Glutamine amidotransferase class-I APY30_21520 PF00958 GMP synthase C terminal domain APY30_21530 PF00902 Sec-independent protein translocase protein (TatC) APY30_21535 PF02416 mttA/Hcf106 family APY30_21540 PF02416 mttA/Hcf106 family APY30_21550 PF00762 Ferrochelatase APY30_21555 PF12697 Alpha/beta hydrolase family APY30_21570 PF04381 Putative exonuclease, RdgC APY30_21575 PF01171 PP-loop family APY30_21585 PF00356 Bacterial regulatory proteins, lacI family APY30_21590 PF03648 Glycosyl hydrolase family 67 N-terminus APY30_21590 PF07477 Glycosyl hydrolase family 67 C-terminus APY30_21590 PF07488 Glycosyl hydrolase family 67 middle domain APY30_21600 PF13378 Enolase C-terminal domain-like APY30_21600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APY30_21605 PF04616 Glycosyl hydrolases family 43 APY30_21605 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain APY30_21610 PF07691 PA14 domain APY30_21610 PF01915 Glycosyl hydrolase family 3 C-terminal domain APY30_21610 PF00933 Glycosyl hydrolase family 3 N terminal domain APY30_21610 PF14310 Fibronectin type III-like domain APY30_21615 PF08125 Mannitol dehydrogenase C-terminal domain APY30_21615 PF01232 Mannitol dehydrogenase Rossmann domain APY30_21640 PF00171 Aldehyde dehydrogenase family APY30_21655 PF00202 Aminotransferase class-III APY30_21665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APY30_21665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APY30_21680 PF08450 SMP-30/Gluconolactonase/LRE-like region APY30_21685 PF00331 Glycosyl hydrolase family 10 APY30_21690 PF02837 Glycosyl hydrolases family 2, sugar binding domain APY30_21690 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APY30_21690 PF00703 Glycosyl hydrolases family 2 APY30_21690 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 APY30_21690 PF16355 Domain of unknown function (DUF4982) APY30_21695 PF02614 Glucuronate isomerase APY30_21710 PF00331 Glycosyl hydrolase family 10 APY30_21710 PF03422 Carbohydrate binding module (family 6) APY30_21710 PF00553 Cellulose binding domain APY30_21730 PF04616 Glycosyl hydrolases family 43 APY30_21755 PF01527 Transposase APY30_21760 PF13276 HTH-like domain APY30_21760 PF13683 Integrase core domain APY30_21785 PF00109 Beta-ketoacyl synthase, N-terminal domain APY30_21785 PF00698 Acyl transferase domain APY30_21785 PF08240 Alcohol dehydrogenase GroES-like domain APY30_21785 PF00107 Zinc-binding dehydrogenase APY30_21785 PF16197 Ketoacyl-synthetase C-terminal extension APY30_21785 PF02801 Beta-ketoacyl synthase, C-terminal domain APY30_21785 PF08659 KR domain APY30_21785 PF00550 Phosphopantetheine attachment site APY30_21785 PF14765 Polyketide synthase dehydratase APY30_21790 PF01553 Acyltransferase APY30_21800 PF00356 Bacterial regulatory proteins, lacI family APY30_21820 PF04820 Tryptophan halogenase APY30_21825 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APY30_21830 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) APY30_21835 PF04337 Protein of unknown function, DUF480 APY30_21845 PF13302 Acetyltransferase (GNAT) domain APY30_21850 PF00580 UvrD/REP helicase N-terminal domain APY30_21850 PF13361 UvrD-like helicase C-terminal domain APY30_21855 PF00265 Thymidine kinase APY30_21860 PF00360 Phytochrome region APY30_21860 PF01590 GAF domain APY30_21860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APY30_21860 PF00512 His Kinase A (phospho-acceptor) domain APY30_21860 PF08446 PAS fold APY30_21865 PF04349 Periplasmic glucan biosynthesis protein, MdoG APY30_21875 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APY30_21875 PF06827 Zinc finger found in FPG and IleRS APY30_21875 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APY30_21910 PF01590 GAF domain APY30_21910 PF13426 PAS domain APY30_21910 PF08446 PAS fold APY30_21910 PF00360 Phytochrome region APY30_21915 PF01126 Heme oxygenase APY30_21920 PF07690 Major Facilitator Superfamily APY30_21925 PF01263 Aldose 1-epimerase APY30_21935 PF02810 SEC-C motif APY30_21940 PF01925 Sulfite exporter TauE/SafE APY30_21960 PF01227 GTP cyclohydrolase I APY30_21970 PF07869 Protein of unknown function (DUF1656) APY30_21975 PF00529 HlyD membrane-fusion protein of T1SS APY30_21975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APY30_21980 PF02321 Outer membrane efflux protein APY30_21985 PF04632 Fusaric acid resistance protein family APY30_21990 PF00083 Sugar (and other) transporter APY30_21995 PF13091 PLD-like domain APY30_21995 PF13396 Phospholipase_D-nuclease N-terminal APY30_22030 PF01850 PIN domain APY30_22055 PF00849 RNA pseudouridylate synthase APY30_22060 PF01527 Transposase APY30_22065 PF13333 Integrase core domain APY30_22065 PF00665 Integrase core domain APY30_22065 PF13276 HTH-like domain APY30_22070 PF02785 Biotin carboxylase C-terminal domain APY30_22070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APY30_22070 PF00289 Biotin carboxylase, N-terminal domain APY30_22075 PF01425 Amidase APY30_22100 PF13538 UvrD-like helicase C-terminal domain APY30_22105 PF13361 UvrD-like helicase C-terminal domain APY30_22105 PF00580 UvrD/REP helicase N-terminal domain APY30_22105 PF12705 PD-(D/E)XK nuclease superfamily APY30_22110 PF17946 RecC C-terminal domain APY30_22125 PF00005 ABC transporter APY30_22130 PF02405 Permease MlaE APY30_22135 PF02470 MlaD protein APY30_22140 PF05494 MlaC protein APY30_22150 PF04333 MlaA lipoprotein APY30_22160 PF00255 Glutathione peroxidase APY30_22170 PF02646 RmuC family APY30_22175 PF00107 Zinc-binding dehydrogenase APY30_22175 PF08240 Alcohol dehydrogenase GroES-like domain APY30_22180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APY30_22180 PF03466 LysR substrate binding domain APY30_22190 PF00043 Glutathione S-transferase, C-terminal domain APY30_22190 PF13417 Glutathione S-transferase, N-terminal domain APY30_22200 PF13520 Amino acid permease APY30_22205 PF07971 Glycosyl hydrolase family 92 APY30_22205 PF17678 Glycosyl hydrolase family 92 N-terminal domain APY30_22215 PF00990 Diguanylate cyclase, GGDEF domain APY30_22235 PF17785 PUA-like domain APY30_22235 PF10672 S-adenosylmethionine-dependent methyltransferase APY30_22240 PF03741 Integral membrane protein TerC family APY30_22245 PF01694 Rhomboid family APY30_22250 PF03009 Glycerophosphoryl diester phosphodiesterase family APY30_22260 PF01569 PAP2 superfamily APY30_22265 PF12631 MnmE helical domain APY30_22265 PF01926 50S ribosome-binding GTPase APY30_22265 PF10396 GTP-binding protein TrmE N-terminus APY30_22270 PF01522 Polysaccharide deacetylase APY30_22280 PF14849 YidC periplasmic domain APY30_22280 PF02096 60Kd inner membrane protein APY30_22285 PF00825 Ribonuclease P APY30_22290 PF00468 Ribosomal protein L34 APY30_22300 PF00239 Resolvase, N terminal domain APY30_22300 PF02796 Helix-turn-helix domain of resolvase APY30_22315 PF01527 Transposase APY30_22320 PF00665 Integrase core domain APY30_22320 PF13333 Integrase core domain APY30_22320 PF13276 HTH-like domain APY30_22360 PF02796 Helix-turn-helix domain of resolvase APY30_22360 PF00239 Resolvase, N terminal domain APY30_22370 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APY30_22405 PF13406 Transglycosylase SLT domain APY30_22425 PF02796 Helix-turn-helix domain of resolvase APY30_22425 PF00239 Resolvase, N terminal domain APY30_22440 PF13700 Domain of unknown function (DUF4158) APY30_22440 PF01526 Tn3 transposase DDE domain APY30_22465 PF13614 AAA domain APY30_22470 PF08535 KorB domain APY30_22470 PF06613 KorB C-terminal beta-barrel domain APY30_22470 PF02195 ParB-like nuclease domain APY30_22545 PF03377 TAL effector repeat APY30_22570 PF02796 Helix-turn-helix domain of resolvase APY30_22570 PF00239 Resolvase, N terminal domain APY30_22575 PF07015 VirC1 protein APY30_22585 PF13180 PDZ domain APY30_22595 PF03377 TAL effector repeat APY30_22600 PF03377 TAL effector repeat