locus-tag class description XCM_0005 PF00308 Bacterial dnaA protein XCM_0005 PF08299 Bacterial dnaA protein helix-turn-helix XCM_0005 PF11638 DnaA N-terminal domain XCM_0010 PF00712 DNA polymerase III beta subunit, N-terminal domain XCM_0010 PF02767 DNA polymerase III beta subunit, central domain XCM_0010 PF02768 DNA polymerase III beta subunit, C-terminal domain XCM_0015 PF02463 RecF/RecN/SMC N terminal domain XCM_0025 PF01751 Toprim domain XCM_0025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_0025 PF18053 DNA gyrase B subunit insert domain XCM_0025 PF00986 DNA gyrase B subunit, carboxyl terminus XCM_0025 PF00204 DNA gyrase B XCM_0035 PF01435 Peptidase family M48 XCM_0045 PF03544 Gram-negative bacterial TonB protein C-terminal XCM_0050 PF01618 MotA/TolQ/ExbB proton channel family XCM_0055 PF02472 Biopolymer transport protein ExbD/TolR XCM_0060 PF02472 Biopolymer transport protein ExbD/TolR XCM_0065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XCM_0075 PF13091 PLD-like domain XCM_0075 PF13396 Phospholipase_D-nuclease N-terminal XCM_0090 PF04055 Radical SAM superfamily XCM_0100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XCM_0115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCM_0115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCM_0120 PF13180 PDZ domain XCM_0120 PF03572 Peptidase family S41 XCM_0125 PF01551 Peptidase family M23 XCM_0135 PF04389 Peptidase family M28 XCM_0145 PF00150 Cellulase (glycosyl hydrolase family 5) XCM_0150 PF00150 Cellulase (glycosyl hydrolase family 5) XCM_0155 PF00150 Cellulase (glycosyl hydrolase family 5) XCM_0160 PF08240 Alcohol dehydrogenase GroES-like domain XCM_0160 PF00107 Zinc-binding dehydrogenase XCM_0165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XCM_0165 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_0170 PF01493 GXGXG motif XCM_0170 PF00310 Glutamine amidotransferases class-II XCM_0170 PF04898 Glutamate synthase central domain XCM_0170 PF01645 Conserved region in glutamate synthase XCM_0190 PF01804 Penicillin amidase XCM_0200 PF03466 LysR substrate binding domain XCM_0200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_0220 PF02397 Bacterial sugar transferase XCM_0225 PF02350 UDP-N-acetylglucosamine 2-epimerase XCM_0235 PF03808 Glycosyl transferase WecB/TagA/CpsF family XCM_0240 PF13439 Glycosyltransferase Family 4 XCM_0240 PF00534 Glycosyl transferases group 1 XCM_0260 PF00733 Asparagine synthase XCM_0260 PF13537 Glutamine amidotransferase domain XCM_0275 PF16363 GDP-mannose 4,6 dehydratase XCM_0290 PF00005 ABC transporter XCM_0290 PF00664 ABC transporter transmembrane region XCM_0300 PF00733 Asparagine synthase XCM_0300 PF13537 Glutamine amidotransferase domain XCM_0320 PF07475 HPr Serine kinase C-terminal domain XCM_0320 PF02603 HPr Serine kinase N terminus XCM_0325 PF00685 Sulfotransferase domain XCM_0420 PF00271 Helicase conserved C-terminal domain XCM_0420 PF09369 Domain of unknown function (DUF1998) XCM_0420 PF00270 DEAD/DEAH box helicase XCM_0425 PF03006 Haemolysin-III related XCM_0440 PF00106 short chain dehydrogenase XCM_0450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_0450 PF03466 LysR substrate binding domain XCM_0460 PF02525 Flavodoxin-like fold XCM_0465 PF05532 CsbD-like XCM_0485 PF16485 Protealysin propeptide XCM_0485 PF01447 Thermolysin metallopeptidase, catalytic domain XCM_0485 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCM_0495 PF00293 NUDIX domain XCM_0495 PF13344 Haloacid dehalogenase-like hydrolase XCM_0505 PF00085 Thioredoxin XCM_0510 PF00083 Sugar (and other) transporter XCM_0510 PF08946 Osmosensory transporter coiled coil XCM_0550 PF07726 ATPase family associated with various cellular activities (AAA) XCM_0550 PF17863 AAA lid domain XCM_0580 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XCM_0585 PF00155 Aminotransferase class I and II XCM_0590 PF00593 TonB dependent receptor XCM_0590 PF07715 TonB-dependent Receptor Plug Domain XCM_0600 PF07883 Cupin domain XCM_0605 PF00171 Aldehyde dehydrogenase family XCM_0615 PF00171 Aldehyde dehydrogenase family XCM_0635 PF02735 Ku70/Ku80 beta-barrel domain XCM_0640 PF01070 FMN-dependent dehydrogenase XCM_0645 PF00144 Beta-lactamase XCM_0650 PF07730 Histidine kinase XCM_0655 PF00072 Response regulator receiver domain XCM_0655 PF00196 Bacterial regulatory proteins, luxR family XCM_0680 PF00486 Transcriptional regulatory protein, C terminal XCM_0680 PF18500 CadC C-terminal domain 1 XCM_0685 PF12241 Trans-2-enoyl-CoA reductase catalytic region XCM_0685 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XCM_0685 PF07055 Enoyl reductase FAD binding domain XCM_0695 PF00294 pfkB family carbohydrate kinase XCM_0735 PF08281 Sigma-70, region 4 XCM_0735 PF04542 Sigma-70 region 2 XCM_0765 PF02540 NAD synthase XCM_0765 PF00795 Carbon-nitrogen hydrolase XCM_0775 PF11896 Domain of unknown function (DUF3416) XCM_0775 PF00128 Alpha amylase, catalytic domain XCM_0780 PF16657 Maltogenic Amylase, C-terminal domain XCM_0780 PF00128 Alpha amylase, catalytic domain XCM_0785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCM_0785 PF02806 Alpha amylase, C-terminal all-beta domain XCM_0785 PF00128 Alpha amylase, catalytic domain XCM_0795 PF00248 Aldo/keto reductase family XCM_0800 PF00135 Carboxylesterase family XCM_0805 PF07859 alpha/beta hydrolase fold XCM_0805 PF13472 GDSL-like Lipase/Acylhydrolase family XCM_0815 PF03480 Bacterial extracellular solute-binding protein, family 7 XCM_0825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XCM_0830 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCM_0830 PF04616 Glycosyl hydrolases family 43 XCM_0835 PF00356 Bacterial regulatory proteins, lacI family XCM_0840 PF04962 KduI/IolB family XCM_0855 PF00657 GDSL-like Lipase/Acylhydrolase XCM_0870 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XCM_0875 PF01037 Lrp/AsnC ligand binding domain XCM_0880 PF00593 TonB dependent receptor XCM_0880 PF07715 TonB-dependent Receptor Plug Domain XCM_0880 PF07660 Secretin and TonB N terminus short domain XCM_0885 PF03377 TAL effector repeat XCM_0890 PF01527 Transposase XCM_0895 PF13276 HTH-like domain XCM_0895 PF00665 Integrase core domain XCM_0895 PF13333 Integrase core domain XCM_0900 PF01734 Patatin-like phospholipase XCM_0910 PF00005 ABC transporter XCM_0925 PF00005 ABC transporter XCM_0930 PF00528 Binding-protein-dependent transport system inner membrane component XCM_0940 PF03781 Sulfatase-modifying factor enzyme 1 XCM_0940 PF12867 DinB superfamily XCM_0960 PF01381 Helix-turn-helix XCM_0980 PF10609 NUBPL iron-transfer P-loop NTPase XCM_0980 PF01883 Iron-sulfur cluster assembly protein XCM_0995 PF13091 PLD-like domain XCM_1000 PF03061 Thioesterase superfamily XCM_10005 PF10609 NUBPL iron-transfer P-loop NTPase XCM_10010 PF00692 dUTPase XCM_10030 PF01738 Dienelactone hydrolase family XCM_10050 PF00872 Transposase, Mutator family XCM_10055 PF00872 Transposase, Mutator family XCM_10060 PF01527 Transposase XCM_10065 PF13276 HTH-like domain XCM_10065 PF13333 Integrase core domain XCM_10065 PF00665 Integrase core domain XCM_10070 PF00082 Subtilase family XCM_10075 PF00004 ATPase family associated with various cellular activities (AAA) XCM_10075 PF17862 AAA+ lid domain XCM_10075 PF01434 Peptidase family M41 XCM_10075 PF06480 FtsH Extracellular XCM_10095 PF04055 Radical SAM superfamily XCM_10095 PF18693 TRAM domain XCM_10095 PF00919 Uncharacterized protein family UPF0004 XCM_10100 PF03449 Transcription elongation factor, N-terminal XCM_10100 PF01272 Transcription elongation factor, GreA/GreB, C-term XCM_10115 PF00293 NUDIX domain XCM_10120 PF05872 Bacterial protein of unknown function (DUF853) XCM_10130 PF02666 Phosphatidylserine decarboxylase XCM_10135 PF02630 SCO1/SenC XCM_10140 PF05175 Methyltransferase small domain XCM_10145 PF01264 Chorismate synthase XCM_10150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCM_10150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCM_10155 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCM_10155 PF02774 Semialdehyde dehydrogenase, dimerisation domain XCM_10175 PF01416 tRNA pseudouridine synthase XCM_10180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XCM_10185 PF03466 LysR substrate binding domain XCM_10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_10190 PF00291 Pyridoxal-phosphate dependent enzyme XCM_10200 PF00290 Tryptophan synthase alpha chain XCM_10205 PF01039 Carboxyl transferase domain XCM_10205 PF17848 Acetyl-coA carboxylase zinc finger domain XCM_10210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCM_10210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCM_10210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCM_10210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCM_10225 PF00563 EAL domain XCM_10225 PF00990 Diguanylate cyclase, GGDEF domain XCM_10225 PF03707 Bacterial signalling protein N terminal repeat XCM_10240 PF00106 short chain dehydrogenase XCM_10245 PF00121 Triosephosphate isomerase XCM_10255 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XCM_10260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XCM_10265 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XCM_10270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XCM_10280 PF10531 SLBB domain XCM_10280 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XCM_10280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XCM_10285 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCM_10285 PF00384 Molybdopterin oxidoreductase XCM_10285 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XCM_10290 PF00146 NADH dehydrogenase XCM_10295 PF12838 4Fe-4S dicluster domain XCM_1030 PF08240 Alcohol dehydrogenase GroES-like domain XCM_1030 PF00107 Zinc-binding dehydrogenase XCM_10300 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XCM_10305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCM_10310 PF00361 Proton-conducting membrane transporter XCM_10310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCM_10315 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XCM_10315 PF00361 Proton-conducting membrane transporter XCM_10320 PF00361 Proton-conducting membrane transporter XCM_10325 PF02576 RimP N-terminal domain XCM_10325 PF17384 RimP C-terminal SH3 domain XCM_10330 PF13184 NusA-like KH domain XCM_10330 PF00575 S1 RNA binding domain XCM_10330 PF08529 NusA N-terminal domain XCM_10335 PF00009 Elongation factor Tu GTP binding domain XCM_10335 PF11987 Translation-initiation factor 2 XCM_10335 PF08364 Bacterial translation initiation factor IF-2 associated region XCM_10335 PF04760 Translation initiation factor IF-2, N-terminal region XCM_10340 PF02033 Ribosome-binding factor A XCM_10345 PF09157 Pseudouridine synthase II TruB, C-terminal XCM_10345 PF16198 tRNA pseudouridylate synthase B C-terminal domain XCM_10345 PF01509 TruB family pseudouridylate synthase (N terminal domain) XCM_10350 PF00312 Ribosomal protein S15 XCM_10355 PF03725 3' exoribonuclease family, domain 2 XCM_10355 PF00013 KH domain XCM_10355 PF00575 S1 RNA binding domain XCM_10355 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XCM_10355 PF01138 3' exoribonuclease family, domain 1 XCM_10365 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XCM_10365 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XCM_10375 PF00731 AIR carboxylase XCM_10380 PF02222 ATP-grasp domain XCM_10380 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XCM_10385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCM_10385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCM_10390 PF00462 Glutaredoxin XCM_1040 PF02673 Bacitracin resistance protein BacA XCM_10400 PF01914 MarC family integral membrane protein XCM_10405 PF00593 TonB dependent receptor XCM_10410 PF11892 Domain of unknown function (DUF3412) XCM_10410 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XCM_10410 PF03641 Possible lysine decarboxylase XCM_10415 PF00114 Pilin (bacterial filament) XCM_10415 PF07963 Prokaryotic N-terminal methylation motif XCM_10435 PF05567 Neisseria PilC beta-propeller domain XCM_1045 PF00120 Glutamine synthetase, catalytic domain XCM_1045 PF03951 Glutamine synthetase, beta-Grasp domain XCM_10450 PF12344 Ultra-violet resistance protein B XCM_10450 PF00271 Helicase conserved C-terminal domain XCM_10450 PF04851 Type III restriction enzyme, res subunit XCM_10450 PF02151 UvrB/uvrC motif XCM_10450 PF17757 UvrB interaction domain XCM_10460 PF02534 Type IV secretory system Conjugative DNA transfer XCM_10465 PF00665 Integrase core domain XCM_10465 PF13333 Integrase core domain XCM_10465 PF13276 HTH-like domain XCM_10470 PF01527 Transposase XCM_10490 PF03743 Bacterial conjugation TrbI-like protein XCM_10495 PF00437 Type II/IV secretion system protein XCM_1050 PF00543 Nitrogen regulatory protein P-II XCM_10500 PF01464 Transglycosylase SLT domain XCM_10510 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XCM_10515 PF00128 Alpha amylase, catalytic domain XCM_10530 PF00672 HAMP domain XCM_10530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10530 PF02203 Tar ligand binding domain homologue XCM_10535 PF00672 HAMP domain XCM_10535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10535 PF02203 Tar ligand binding domain homologue XCM_10540 PF02203 Tar ligand binding domain homologue XCM_10540 PF00672 HAMP domain XCM_10540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10545 PF00672 HAMP domain XCM_10545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10545 PF02203 Tar ligand binding domain homologue XCM_1055 PF00909 Ammonium Transporter Family XCM_10550 PF00672 HAMP domain XCM_10550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10550 PF02203 Tar ligand binding domain homologue XCM_10555 PF00672 HAMP domain XCM_10555 PF02203 Tar ligand binding domain homologue XCM_10555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10560 PF02203 Tar ligand binding domain homologue XCM_10560 PF00672 HAMP domain XCM_10560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10570 PF00672 HAMP domain XCM_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10570 PF02203 Tar ligand binding domain homologue XCM_10575 PF00672 HAMP domain XCM_10575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10575 PF02203 Tar ligand binding domain homologue XCM_10585 PF00672 HAMP domain XCM_10585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10585 PF02203 Tar ligand binding domain homologue XCM_10590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10590 PF08269 Cache domain XCM_10590 PF08269 Cache domain XCM_10590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_1060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_1060 PF00512 His Kinase A (phospho-acceptor) domain XCM_1060 PF00989 PAS fold XCM_10600 PF02203 Tar ligand binding domain homologue XCM_10600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_10600 PF00672 HAMP domain XCM_10605 PF09078 CheY binding XCM_10605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_10605 PF01584 CheW-like domain XCM_10605 PF01627 Hpt domain XCM_10605 PF02895 Signal transducing histidine kinase, homodimeric domain XCM_10610 PF00072 Response regulator receiver domain XCM_10620 PF01584 CheW-like domain XCM_10625 PF13614 AAA domain XCM_10630 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCM_10630 PF00691 OmpA family XCM_10635 PF01618 MotA/TolQ/ExbB proton channel family XCM_1065 PF00158 Sigma-54 interaction domain XCM_1065 PF00072 Response regulator receiver domain XCM_1065 PF02954 Bacterial regulatory protein, Fis family XCM_10660 PF13614 AAA domain XCM_10675 PF01527 Transposase XCM_10685 PF02796 Helix-turn-helix domain of resolvase XCM_10685 PF00239 Resolvase, N terminal domain XCM_1070 PF00080 Copper/zinc superoxide dismutase (SODC) XCM_10710 PF00072 Response regulator receiver domain XCM_10710 PF00196 Bacterial regulatory proteins, luxR family XCM_10740 PF02303 Helix-destabilising protein XCM_1075 PF00080 Copper/zinc superoxide dismutase (SODC) XCM_10765 PF05857 TraX protein XCM_10775 PF00106 short chain dehydrogenase XCM_10780 PF05199 GMC oxidoreductase XCM_10780 PF00732 GMC oxidoreductase XCM_10785 PF12697 Alpha/beta hydrolase family XCM_10785 PF08241 Methyltransferase domain XCM_1080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCM_10835 PF01106 NifU-like domain XCM_10840 PF01329 Pterin 4 alpha carbinolamine dehydratase XCM_10850 PF02535 ZIP Zinc transporter XCM_10855 PF11737 Protein of unknown function (DUF3300) XCM_10860 PF00849 RNA pseudouridylate synthase XCM_10860 PF01479 S4 domain XCM_10865 PF00575 S1 RNA binding domain XCM_10865 PF12111 Polyribonucleotide phosphorylase C terminal XCM_10865 PF10150 Ribonuclease E/G family XCM_10870 PF00196 Bacterial regulatory proteins, luxR family XCM_10870 PF00072 Response regulator receiver domain XCM_10875 PF00581 Rhodanese-like domain XCM_10875 PF17773 UPF0176 acylphosphatase like domain XCM_10885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCM_10895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCM_10895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCM_10895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCM_1090 PF02803 Thiolase, C-terminal domain XCM_1090 PF00108 Thiolase, N-terminal domain XCM_10900 PF17837 4'-phosphopantetheinyl transferase N-terminal domain XCM_10900 PF01648 4'-phosphopantetheinyl transferase superfamily XCM_10905 PF00975 Thioesterase domain XCM_10905 PF00550 Phosphopantetheine attachment site XCM_10905 PF13193 AMP-binding enzyme C-terminal domain XCM_10905 PF00501 AMP-binding enzyme XCM_10905 PF00668 Condensation domain XCM_10910 PF00501 AMP-binding enzyme XCM_10910 PF13193 AMP-binding enzyme C-terminal domain XCM_10910 PF00668 Condensation domain XCM_10910 PF00550 Phosphopantetheine attachment site XCM_10910 PF00975 Thioesterase domain XCM_10925 PF01066 CDP-alcohol phosphatidyltransferase XCM_10935 PF01541 GIY-YIG catalytic domain XCM_10935 PF02151 UvrB/uvrC motif XCM_10935 PF08459 UvrC Helix-hairpin-helix N-terminal XCM_10945 PF01451 Low molecular weight phosphotyrosine protein phosphatase XCM_10950 PF02348 Cytidylyltransferase XCM_10955 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XCM_10960 PF00664 ABC transporter transmembrane region XCM_10960 PF00005 ABC transporter XCM_10970 PF01618 MotA/TolQ/ExbB proton channel family XCM_10975 PF03772 Competence protein XCM_10975 PF00753 Metallo-beta-lactamase superfamily XCM_10990 PF00005 ABC transporter XCM_10995 PF12704 MacB-like periplasmic core domain XCM_10995 PF02687 FtsX-like permease family XCM_11005 PF03937 Flavinator of succinate dehydrogenase XCM_11010 PF13085 2Fe-2S iron-sulfur cluster binding domain XCM_11020 PF00890 FAD binding domain XCM_11020 PF02910 Fumarate reductase flavoprotein C-term XCM_11025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XCM_11030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XCM_11040 PF17912 MalK OB fold domain XCM_11040 PF00005 ABC transporter XCM_11045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCM_11045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCM_11050 PF02685 Glucokinase XCM_11055 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XCM_11060 PF00920 Dehydratase family XCM_11065 PF01081 KDPG and KHG aldolase XCM_11070 PF00873 AcrB/AcrD/AcrF family XCM_11075 PF00873 AcrB/AcrD/AcrF family XCM_11080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_11090 PF00034 Cytochrome c XCM_11105 PF00072 Response regulator receiver domain XCM_11105 PF09308 LuxQ, periplasmic XCM_11105 PF00512 His Kinase A (phospho-acceptor) domain XCM_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_11110 PF17674 HHH domain XCM_11110 PF00575 S1 RNA binding domain XCM_11110 PF09371 Tex-like protein N-terminal domain XCM_11110 PF16921 Tex protein YqgF-like domain XCM_11120 PF00355 Rieske [2Fe-2S] domain XCM_11120 PF01266 FAD dependent oxidoreductase XCM_11135 PF00561 alpha/beta hydrolase fold XCM_11145 PF01066 CDP-alcohol phosphatidyltransferase XCM_11165 PF03618 Kinase/pyrophosphorylase XCM_11170 PF00391 PEP-utilising enzyme, mobile domain XCM_11170 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XCM_11170 PF02896 PEP-utilising enzyme, TIM barrel domain XCM_11175 PF00924 Mechanosensitive ion channel XCM_11175 PF05552 Conserved TM helix XCM_11180 PF00929 Exonuclease XCM_11185 PF14437 MafB19-like deaminase XCM_11190 PF02742 Iron dependent repressor, metal binding and dimerisation domain XCM_11190 PF01325 Iron dependent repressor, N-terminal DNA binding domain XCM_11195 PF01566 Natural resistance-associated macrophage protein XCM_11200 PF00561 alpha/beta hydrolase fold XCM_11210 PF12804 MobA-like NTP transferase domain XCM_11215 PF03453 MoeA N-terminal region (domain I and II) XCM_11215 PF03454 MoeA C-terminal region (domain IV) XCM_11215 PF00994 Probable molybdopterin binding domain XCM_11225 PF03372 Endonuclease/Exonuclease/phosphatase family XCM_11235 PF08240 Alcohol dehydrogenase GroES-like domain XCM_11235 PF13823 Alcohol dehydrogenase GroES-associated XCM_11235 PF00107 Zinc-binding dehydrogenase XCM_1125 PF00581 Rhodanese-like domain XCM_11260 PF00899 ThiF family XCM_11265 PF00994 Probable molybdopterin binding domain XCM_11265 PF03454 MoeA C-terminal region (domain IV) XCM_11265 PF03453 MoeA N-terminal region (domain I and II) XCM_11270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XCM_11270 PF01926 50S ribosome-binding GTPase XCM_11275 PF01011 PQQ enzyme repeat XCM_11275 PF13360 PQQ-like domain XCM_11285 PF13464 Domain of unknown function (DUF4115) XCM_11295 PF04055 Radical SAM superfamily XCM_1130 PF02556 Preprotein translocase subunit SecB XCM_11300 PF00334 Nucleoside diphosphate kinase XCM_11310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCM_11310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCM_11310 PF00378 Enoyl-CoA hydratase/isomerase XCM_11315 PF00108 Thiolase, N-terminal domain XCM_11315 PF02803 Thiolase, C-terminal domain XCM_11320 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XCM_11325 PF16193 AAA C-terminal domain XCM_11325 PF00004 ATPase family associated with various cellular activities (AAA) XCM_11325 PF12002 MgsA AAA+ ATPase C terminal XCM_11335 PF03548 Outer membrane lipoprotein carrier protein LolA XCM_11345 PF01580 FtsK/SpoIIIE family XCM_11345 PF09397 Ftsk gamma domain XCM_11345 PF17854 FtsK alpha domain XCM_11345 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XCM_1135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XCM_1135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XCM_11350 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_11360 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XCM_11365 PF01176 Translation initiation factor 1A / IF-1 XCM_11370 PF10431 C-terminal, D2-small domain, of ClpB protein XCM_11370 PF17871 AAA lid domain XCM_11370 PF02861 Clp amino terminal domain, pathogenicity island component XCM_11370 PF00004 ATPase family associated with various cellular activities (AAA) XCM_11370 PF07724 AAA domain (Cdc48 subfamily) XCM_11375 PF02617 ATP-dependent Clp protease adaptor protein ClpS XCM_11380 PF00293 NUDIX domain XCM_11390 PF04356 Protein of unknown function (DUF489) XCM_11395 PF12729 Four helix bundle sensory module for signal transduction XCM_11395 PF00672 HAMP domain XCM_11395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_11405 PF03707 Bacterial signalling protein N terminal repeat XCM_11405 PF00990 Diguanylate cyclase, GGDEF domain XCM_11405 PF00563 EAL domain XCM_11410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_11410 PF07730 Histidine kinase XCM_11415 PF00563 EAL domain XCM_11415 PF03707 Bacterial signalling protein N terminal repeat XCM_11415 PF00990 Diguanylate cyclase, GGDEF domain XCM_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_11420 PF13188 PAS domain XCM_11420 PF13426 PAS domain XCM_11420 PF00989 PAS fold XCM_11420 PF00512 His Kinase A (phospho-acceptor) domain XCM_11440 PF00072 Response regulator receiver domain XCM_11440 PF01584 CheW-like domain XCM_11450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_11450 PF00460 Flagella basal body rod protein XCM_11455 PF03963 Flagellar hook capping protein - N-terminal region XCM_11460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_11460 PF07559 Flagellar basal body protein FlaE XCM_11460 PF00460 Flagella basal body rod protein XCM_11465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_11465 PF00460 Flagella basal body rod protein XCM_11470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_11470 PF00460 Flagella basal body rod protein XCM_11475 PF02107 Flagellar L-ring protein XCM_11480 PF02119 Flagellar P-ring protein XCM_11485 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XCM_11485 PF10135 Rod binding protein XCM_11490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_11490 PF07196 Flagellin hook IN motif XCM_11495 PF00700 Bacterial flagellin C-terminal helical region XCM_11495 PF00669 Bacterial flagellin N-terminal helical region XCM_11500 PF00700 Bacterial flagellin C-terminal helical region XCM_11500 PF00669 Bacterial flagellin N-terminal helical region XCM_11505 PF07195 Flagellar hook-associated protein 2 C-terminus XCM_11505 PF07196 Flagellin hook IN motif XCM_11505 PF02465 Flagellar hook-associated protein 2 N-terminus XCM_11510 PF02561 Flagellar protein FliS XCM_11525 PF00072 Response regulator receiver domain XCM_11525 PF00196 Bacterial regulatory proteins, luxR family XCM_11530 PF04552 Sigma-54, DNA binding domain XCM_11530 PF04963 Sigma-54 factor, core binding domain XCM_11530 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCM_11535 PF00072 Response regulator receiver domain XCM_11535 PF01339 CheB methylesterase XCM_11540 PF02954 Bacterial regulatory protein, Fis family XCM_11540 PF00158 Sigma-54 interaction domain XCM_11540 PF06490 Flagellar regulatory protein FleQ XCM_11545 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCM_11555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCM_11555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCM_11560 PF00106 short chain dehydrogenase XCM_11570 PF00106 short chain dehydrogenase XCM_11580 PF04230 Polysaccharide pyruvyl transferase XCM_11585 PF00534 Glycosyl transferases group 1 XCM_11585 PF00535 Glycosyl transferase family 2 XCM_11590 PF02049 Flagellar hook-basal body complex protein FliE XCM_11595 PF01514 Secretory protein of YscJ/FliF family XCM_11595 PF08345 Flagellar M-ring protein C-terminal XCM_11600 PF01706 FliG C-terminal domain XCM_11600 PF14841 FliG middle domain XCM_11600 PF14842 FliG N-terminal domain XCM_11610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCM_11610 PF18269 T3SS EscN ATPase C-terminal domain XCM_11630 PF02154 Flagellar motor switch protein FliM XCM_11630 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCM_11635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCM_11640 PF04347 Flagellar biosynthesis protein, FliO XCM_11645 PF00813 FliP family XCM_11650 PF01313 Bacterial export proteins, family 3 XCM_11655 PF01311 Bacterial export proteins, family 1 XCM_11665 PF00990 Diguanylate cyclase, GGDEF domain XCM_11670 PF00990 Diguanylate cyclase, GGDEF domain XCM_11675 PF03707 Bacterial signalling protein N terminal repeat XCM_11675 PF00990 Diguanylate cyclase, GGDEF domain XCM_11675 PF00563 EAL domain XCM_11680 PF01312 FlhB HrpN YscU SpaS Family XCM_11685 PF00771 FHIPEP family XCM_11690 PF00448 SRP54-type protein, GTPase domain XCM_11695 PF10609 NUBPL iron-transfer P-loop NTPase XCM_11700 PF04542 Sigma-70 region 2 XCM_11700 PF04539 Sigma-70 region 3 XCM_11700 PF04545 Sigma-70, region 4 XCM_11705 PF00072 Response regulator receiver domain XCM_11710 PF04344 Chemotaxis phosphatase, CheZ XCM_11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_11715 PF01627 Hpt domain XCM_11715 PF00072 Response regulator receiver domain XCM_11715 PF01584 CheW-like domain XCM_11715 PF02895 Signal transducing histidine kinase, homodimeric domain XCM_11720 PF01527 Transposase XCM_11725 PF13333 Integrase core domain XCM_11725 PF00665 Integrase core domain XCM_11725 PF13276 HTH-like domain XCM_11755 PF13683 Integrase core domain XCM_11755 PF13276 HTH-like domain XCM_11760 PF01527 Transposase XCM_11765 PF01527 Transposase XCM_11785 PF01936 NYN domain XCM_11785 PF09722 Protein of unknown function (DUF2384) XCM_11795 PF00239 Resolvase, N terminal domain XCM_11795 PF02796 Helix-turn-helix domain of resolvase XCM_1180 PF01313 Bacterial export proteins, family 3 XCM_11825 PF01051 Initiator Replication protein XCM_11855 PF05598 Transposase domain (DUF772) XCM_11860 PF00156 Phosphoribosyl transferase domain XCM_1190 PF01312 FlhB HrpN YscU SpaS Family XCM_11905 PF00990 Diguanylate cyclase, GGDEF domain XCM_11905 PF08448 PAS fold XCM_11905 PF08447 PAS fold XCM_11905 PF00563 EAL domain XCM_11920 PF05974 Domain of unknown function (DUF892) XCM_11930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCM_11940 PF10414 Sirohaem synthase dimerisation region XCM_11940 PF14824 Sirohaem biosynthesis protein central XCM_11940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCM_11945 PF05977 Transmembrane secretion effector XCM_1195 PF00771 FHIPEP family XCM_11950 PF07969 Amidohydrolase family XCM_11960 PF00857 Isochorismatase family XCM_11975 PF00196 Bacterial regulatory proteins, luxR family XCM_11975 PF00072 Response regulator receiver domain XCM_11990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_11990 PF03466 LysR substrate binding domain XCM_11995 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus XCM_11995 PF00361 Proton-conducting membrane transporter XCM_11995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCM_1200 PF00460 Flagella basal body rod protein XCM_1200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_12000 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) XCM_12015 PF13086 AAA domain XCM_12015 PF13087 AAA domain XCM_12015 PF13195 Protein of unknown function (DUF4011) XCM_12015 PF13086 AAA domain XCM_12015 PF13087 AAA domain XCM_12015 PF13195 Protein of unknown function (DUF4011) XCM_12040 PF01420 Type I restriction modification DNA specificity domain XCM_12045 PF17761 DUF1016 N-terminal domain XCM_12045 PF06250 YhcG PDDEXK nuclease domain XCM_1205 PF00460 Flagella basal body rod protein XCM_1205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_12050 PF12161 HsdM N-terminal domain XCM_12050 PF02384 N-6 DNA Methylase XCM_12055 PF08463 EcoEI R protein C-terminal XCM_12055 PF00271 Helicase conserved C-terminal domain XCM_12055 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) XCM_12055 PF04851 Type III restriction enzyme, res subunit XCM_12070 PF03743 Bacterial conjugation TrbI-like protein XCM_12075 PF03524 Conjugal transfer protein XCM_12085 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCM_12100 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XCM_12110 PF04956 TrbC/VIRB2 family XCM_12115 PF00437 Type II/IV secretion system protein XCM_12125 PF02534 Type IV secretory system Conjugative DNA transfer XCM_12135 PF03466 LysR substrate binding domain XCM_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_12145 PF07690 Major Facilitator Superfamily XCM_1215 PF02107 Flagellar L-ring protein XCM_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_12150 PF03466 LysR substrate binding domain XCM_12160 PF03466 LysR substrate binding domain XCM_12160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_12165 PF07690 Major Facilitator Superfamily XCM_12175 PF09339 IclR helix-turn-helix domain XCM_12175 PF01614 Bacterial transcriptional regulator XCM_12180 PF07690 Major Facilitator Superfamily XCM_12185 PF03466 LysR substrate binding domain XCM_12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_12195 PF10502 Signal peptidase, peptidase S26 XCM_1220 PF02119 Flagellar P-ring protein XCM_12210 PF13614 AAA domain XCM_12245 PF04002 RadC-like JAB domain XCM_12265 PF00589 Phage integrase family XCM_12265 PF13356 Arm DNA-binding domain XCM_12280 PF17728 BsuBI/PstI restriction endonuclease HTH domain XCM_12280 PF06616 BsuBI/PstI restriction endonuclease domain XCM_12285 PF07669 Eco57I restriction-modification methylase XCM_12290 PF00239 Resolvase, N terminal domain XCM_12290 PF02796 Helix-turn-helix domain of resolvase XCM_12345 PF13356 Arm DNA-binding domain XCM_12345 PF00589 Phage integrase family XCM_1235 PF02049 Flagellar hook-basal body complex protein FliE XCM_12350 PF03377 TAL effector repeat XCM_12360 PF00958 GMP synthase C terminal domain XCM_12360 PF02540 NAD synthase XCM_12360 PF00117 Glutamine amidotransferase class-I XCM_12365 PF00571 CBS domain XCM_12365 PF00478 IMP dehydrogenase / GMP reductase domain XCM_12370 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XCM_12370 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XCM_12380 PF00999 Sodium/hydrogen exchanger family XCM_12380 PF02254 TrkA-N domain XCM_12385 PF00483 Nucleotidyl transferase XCM_12390 PF02719 Polysaccharide biosynthesis protein XCM_12395 PF00953 Glycosyl transferase family 4 XCM_1240 PF08345 Flagellar M-ring protein C-terminal XCM_1240 PF01514 Secretory protein of YscJ/FliF family XCM_12400 PF18073 Rubredoxin metal binding domain XCM_12410 PF00216 Bacterial DNA-binding protein XCM_12415 PF00575 S1 RNA binding domain XCM_12420 PF02224 Cytidylate kinase XCM_12425 PF00444 Ribosomal protein L36 XCM_12440 PF04371 Porphyromonas-type peptidyl-arginine deiminase XCM_12445 PF00795 Carbon-nitrogen hydrolase XCM_12470 PF00528 Binding-protein-dependent transport system inner membrane component XCM_12475 PF00528 Binding-protein-dependent transport system inner membrane component XCM_12495 PF00356 Bacterial regulatory proteins, lacI family XCM_12505 PF03795 YCII-related domain XCM_12510 PF02616 Segregation and condensation protein ScpA XCM_12515 PF04079 Segregation and condensation complex subunit ScpB XCM_12520 PF01479 S4 domain XCM_12520 PF00849 RNA pseudouridylate synthase XCM_12535 PF00795 Carbon-nitrogen hydrolase XCM_12540 PF00155 Aminotransferase class I and II XCM_12545 PF00005 ABC transporter XCM_1255 PF18269 T3SS EscN ATPase C-terminal domain XCM_1255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCM_1255 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCM_12550 PF03379 CcmB protein XCM_12555 PF01578 Cytochrome C assembly protein XCM_12565 PF03100 CcmE XCM_12570 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCM_12570 PF01578 Cytochrome C assembly protein XCM_12575 PF08534 Redoxin XCM_12580 PF03918 Cytochrome C biogenesis protein XCM_12590 PF00561 alpha/beta hydrolase fold XCM_12595 PF00313 'Cold-shock' DNA-binding domain XCM_12600 PF00664 ABC transporter transmembrane region XCM_12600 PF00005 ABC transporter XCM_12605 PF00005 ABC transporter XCM_12605 PF00664 ABC transporter transmembrane region XCM_12610 PF01654 Cytochrome bd terminal oxidase subunit I XCM_12615 PF02322 Cytochrome bd terminal oxidase subunit II XCM_12630 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XCM_12630 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XCM_12635 PF00171 Aldehyde dehydrogenase family XCM_12640 PF00696 Amino acid kinase family XCM_12640 PF01472 PUA domain XCM_12650 PF00206 Lyase XCM_12655 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCM_12665 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XCM_12665 PF00696 Amino acid kinase family XCM_12670 PF07687 Peptidase dimerisation domain XCM_12670 PF01546 Peptidase family M20/M25/M40 XCM_12680 PF00764 Arginosuccinate synthase XCM_12685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCM_12685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCM_12695 PF09190 DALR domain XCM_12695 PF01406 tRNA synthetases class I (C) catalytic domain XCM_1270 PF03963 Flagellar hook capping protein - N-terminal region XCM_12700 PF02657 Fe-S metabolism associated domain XCM_12710 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCM_12715 PF01809 Putative membrane protein insertion efficiency factor XCM_12720 PF01979 Amidohydrolase family XCM_12725 PF08460 Bacterial SH3 domain XCM_12725 PF01551 Peptidase family M23 XCM_12740 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XCM_12745 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XCM_1275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCM_1275 PF00460 Flagella basal body rod protein XCM_1275 PF07559 Flagellar basal body protein FlaE XCM_12755 PF00753 Metallo-beta-lactamase superfamily XCM_12775 PF01527 Transposase XCM_12795 PF00295 Glycosyl hydrolases family 28 XCM_12805 PF13419 Haloacid dehalogenase-like hydrolase XCM_12815 PF01979 Amidohydrolase family XCM_12825 PF01132 Elongation factor P (EF-P) OB domain XCM_12825 PF08207 Elongation factor P (EF-P) KOW-like domain XCM_12825 PF09285 Elongation factor P, C-terminal XCM_12830 PF04055 Radical SAM superfamily XCM_12835 PF00563 EAL domain XCM_12835 PF00990 Diguanylate cyclase, GGDEF domain XCM_12835 PF03707 Bacterial signalling protein N terminal repeat XCM_12835 PF13188 PAS domain XCM_12845 PF00588 SpoU rRNA Methylase family XCM_1285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCM_12850 PF00459 Inositol monophosphatase family XCM_12855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCM_12855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCM_12860 PF00545 ribonuclease XCM_12870 PF12848 ABC transporter XCM_12870 PF16326 ABC transporter C-terminal domain XCM_12870 PF00005 ABC transporter XCM_12875 PF00271 Helicase conserved C-terminal domain XCM_12875 PF00270 DEAD/DEAH box helicase XCM_12875 PF03880 DbpA RNA binding domain XCM_12880 PF00156 Phosphoribosyl transferase domain XCM_12885 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XCM_12890 PF00135 Carboxylesterase family XCM_12895 PF14497 Glutathione S-transferase, C-terminal domain XCM_12895 PF02798 Glutathione S-transferase, N-terminal domain XCM_12900 PF00313 'Cold-shock' DNA-binding domain XCM_12905 PF07152 YaeQ protein XCM_12915 PF00072 Response regulator receiver domain XCM_12915 PF00563 EAL domain XCM_12915 PF00990 Diguanylate cyclase, GGDEF domain XCM_12920 PF01435 Peptidase family M48 XCM_12925 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCM_12930 PF00106 short chain dehydrogenase XCM_12935 PF07879 PHB/PHA accumulation regulator DNA-binding domain XCM_12935 PF05233 PHB accumulation regulatory domain XCM_1295 PF00813 FliP family XCM_12950 PF01119 DNA mismatch repair protein, C-terminal domain XCM_12950 PF08676 MutL C terminal dimerisation domain XCM_12955 PF11741 AMIN domain XCM_12955 PF01520 N-acetylmuramoyl-L-alanine amidase XCM_12960 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XCM_12965 PF01256 Carbohydrate kinase XCM_12965 PF03853 YjeF-related protein N-terminus XCM_12970 PF08331 Domain of unknown function (DUF1730) XCM_12975 PF02601 Exonuclease VII, large subunit XCM_12975 PF13742 OB-fold nucleic acid binding domain XCM_12985 PF03781 Sulfatase-modifying factor enzyme 1 XCM_12990 PF01612 3'-5' exonuclease XCM_12990 PF00570 HRDC domain XCM_1300 PF04545 Sigma-70, region 4 XCM_1300 PF04542 Sigma-70 region 2 XCM_1300 PF00140 Sigma-70 factor, region 1.2 XCM_1300 PF04539 Sigma-70 region 3 XCM_13000 PF04679 ATP dependent DNA ligase C terminal region XCM_13000 PF01068 ATP dependent DNA ligase domain XCM_13000 PF13298 DNA polymerase Ligase (LigD) XCM_13025 PF01584 CheW-like domain XCM_13030 PF12729 Four helix bundle sensory module for signal transduction XCM_13030 PF00672 HAMP domain XCM_13030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_13035 PF02245 Methylpurine-DNA glycosylase (MPG) XCM_13040 PF00270 DEAD/DEAH box helicase XCM_13040 PF08494 DEAD/H associated XCM_13040 PF00271 Helicase conserved C-terminal domain XCM_1305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCM_1305 PF00205 Thiamine pyrophosphate enzyme, central domain XCM_1305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCM_13055 PF04386 Stringent starvation protein B XCM_13060 PF02798 Glutathione S-transferase, N-terminal domain XCM_13060 PF00043 Glutathione S-transferase, C-terminal domain XCM_13065 PF02167 Cytochrome C1 family XCM_13070 PF00033 Cytochrome b/b6/petB XCM_13070 PF00032 Cytochrome b(C-terminal)/b6/petD XCM_13075 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XCM_13075 PF00355 Rieske [2Fe-2S] domain XCM_13080 PF01464 Transglycosylase SLT domain XCM_13095 PF01938 TRAM domain XCM_13095 PF00919 Uncharacterized protein family UPF0004 XCM_13095 PF04055 Radical SAM superfamily XCM_1310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_13100 PF02562 PhoH-like protein XCM_13120 PF02130 Uncharacterized protein family UPF0054 XCM_13130 PF00571 CBS domain XCM_13130 PF03471 Transporter associated domain XCM_13145 PF00171 Aldehyde dehydrogenase family XCM_1315 PF00072 Response regulator receiver domain XCM_1315 PF00158 Sigma-54 interaction domain XCM_1315 PF02954 Bacterial regulatory protein, Fis family XCM_13150 PF00528 Binding-protein-dependent transport system inner membrane component XCM_13155 PF00528 Binding-protein-dependent transport system inner membrane component XCM_13160 PF00005 ABC transporter XCM_13160 PF08402 TOBE domain XCM_13165 PF02321 Outer membrane efflux protein XCM_13170 PF07690 Major Facilitator Superfamily XCM_13175 PF13533 Biotin-lipoyl like XCM_13180 PF13416 Bacterial extracellular solute-binding protein XCM_13185 PF00202 Aminotransferase class-III XCM_13190 PF00120 Glutamine synthetase, catalytic domain XCM_13195 PF07722 Peptidase C26 XCM_13200 PF00120 Glutamine synthetase, catalytic domain XCM_13205 PF01266 FAD dependent oxidoreductase XCM_13215 PF00990 Diguanylate cyclase, GGDEF domain XCM_13215 PF00072 Response regulator receiver domain XCM_13220 PF01814 Hemerythrin HHE cation binding domain XCM_13225 PF07690 Major Facilitator Superfamily XCM_13225 PF00083 Sugar (and other) transporter XCM_13235 PF00384 Molybdopterin oxidoreductase XCM_13240 PF02634 FdhD/NarQ family XCM_13245 PF07690 Major Facilitator Superfamily XCM_13250 PF00202 Aminotransferase class-III XCM_13260 PF04286 Protein of unknown function (DUF445) XCM_13265 PF00672 HAMP domain XCM_13265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_13265 PF00512 His Kinase A (phospho-acceptor) domain XCM_13265 PF01627 Hpt domain XCM_13265 PF00072 Response regulator receiver domain XCM_13265 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCM_13270 PF00072 Response regulator receiver domain XCM_13275 PF07690 Major Facilitator Superfamily XCM_13285 PF05088 Bacterial NAD-glutamate dehydrogenase XCM_13295 PF00529 HlyD membrane-fusion protein of T1SS XCM_13295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_1330 PF07690 Major Facilitator Superfamily XCM_13300 PF00873 AcrB/AcrD/AcrF family XCM_13305 PF00356 Bacterial regulatory proteins, lacI family XCM_13310 PF05524 PEP-utilising enzyme, N-terminal XCM_13310 PF00391 PEP-utilising enzyme, mobile domain XCM_13310 PF02896 PEP-utilising enzyme, TIM barrel domain XCM_13310 PF00381 PTS HPr component phosphorylation site XCM_13310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCM_13315 PF00294 pfkB family carbohydrate kinase XCM_13320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XCM_13340 PF01527 Transposase XCM_13345 PF13333 Integrase core domain XCM_13345 PF13276 HTH-like domain XCM_13345 PF00665 Integrase core domain XCM_1335 PF00588 SpoU rRNA Methylase family XCM_13365 PF13495 Phage integrase, N-terminal SAM-like domain XCM_13365 PF00589 Phage integrase family XCM_13370 PF07549 SecD/SecF GG Motif XCM_13370 PF02355 Protein export membrane protein XCM_13375 PF13721 SecD export protein N-terminal TM region XCM_13375 PF07549 SecD/SecF GG Motif XCM_13375 PF02355 Protein export membrane protein XCM_13380 PF02699 Preprotein translocase subunit XCM_13385 PF01702 Queuine tRNA-ribosyltransferase XCM_13390 PF02547 Queuosine biosynthesis protein XCM_13440 PF02927 Cellulase N-terminal ig-like domain XCM_13440 PF00759 Glycosyl hydrolase family 9 XCM_13450 PF00037 4Fe-4S binding domain XCM_13465 PF01467 Cytidylyltransferase-like XCM_13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_13475 PF00183 Hsp90 protein XCM_13495 PF07715 TonB-dependent Receptor Plug Domain XCM_13495 PF00593 TonB dependent receptor XCM_13505 PF04616 Glycosyl hydrolases family 43 XCM_13510 PF07532 Bacterial Ig-like domain (group 4) XCM_13515 PF07715 TonB-dependent Receptor Plug Domain XCM_13515 PF00593 TonB dependent receptor XCM_13525 PF00082 Subtilase family XCM_13525 PF09286 Pro-kumamolisin, activation domain XCM_1355 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCM_1355 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCM_13555 PF13520 Amino acid permease XCM_13570 PF00557 Metallopeptidase family M24 XCM_13570 PF01321 Creatinase/Prolidase N-terminal domain XCM_13575 PF00171 Aldehyde dehydrogenase family XCM_13580 PF00701 Dihydrodipicolinate synthetase family XCM_13585 PF04324 BFD-like [2Fe-2S] binding domain XCM_13585 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_13595 PF01266 FAD dependent oxidoreductase XCM_1360 PF13784 Fic/DOC family N-terminal XCM_1360 PF02661 Fic/DOC family XCM_13600 PF05544 Proline racemase XCM_13610 PF02881 SRP54-type protein, helical bundle domain XCM_13610 PF00448 SRP54-type protein, GTPase domain XCM_13615 PF10576 Iron-sulfur binding domain of endonuclease III XCM_13615 PF00633 Helix-hairpin-helix motif XCM_13615 PF00730 HhH-GPD superfamily base excision DNA repair protein XCM_13615 PF14815 NUDIX domain XCM_13620 PF04362 Bacterial Fe(2+) trafficking XCM_13625 PF00072 Response regulator receiver domain XCM_13625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_13625 PF13426 PAS domain XCM_1365 PF00561 alpha/beta hydrolase fold XCM_13650 PF08212 Lipocalin-like domain XCM_13660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_13660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCM_13660 PF12806 Acetyl-CoA dehydrogenase C-terminal like XCM_13660 PF02770 Acyl-CoA dehydrogenase, middle domain XCM_13670 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XCM_13670 PF02779 Transketolase, pyrimidine binding domain XCM_13670 PF02780 Transketolase, C-terminal domain XCM_13690 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCM_1370 PF03692 Putative zinc- or iron-chelating domain XCM_13700 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCM_13700 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCM_13715 PF03808 Glycosyl transferase WecB/TagA/CpsF family XCM_13730 PF14667 Polysaccharide biosynthesis C-terminal domain XCM_13740 PF13439 Glycosyltransferase Family 4 XCM_13740 PF00534 Glycosyl transferases group 1 XCM_1375 PF00501 AMP-binding enzyme XCM_13760 PF02397 Bacterial sugar transferase XCM_13775 PF13411 MerR HTH family regulatory protein XCM_13780 PF00216 Bacterial DNA-binding protein XCM_13785 PF03483 B3/4 domain XCM_13785 PF03484 tRNA synthetase B5 domain XCM_13785 PF03147 Ferredoxin-fold anticodon binding domain XCM_13785 PF01588 Putative tRNA binding domain XCM_13785 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XCM_13790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XCM_13790 PF01409 tRNA synthetases class II core domain (F) XCM_13795 PF00453 Ribosomal protein L20 XCM_13800 PF01632 Ribosomal protein L35 XCM_13805 PF00707 Translation initiation factor IF-3, C-terminal domain XCM_13805 PF05198 Translation initiation factor IF-3, N-terminal domain XCM_13810 PF03129 Anticodon binding domain XCM_13810 PF02824 TGS domain XCM_13810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCM_13810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCM_13815 PF00356 Bacterial regulatory proteins, lacI family XCM_13820 PF00686 Starch binding domain XCM_13820 PF00128 Alpha amylase, catalytic domain XCM_13825 PF03423 Carbohydrate binding domain (family 25) XCM_13825 PF01373 Glycosyl hydrolase family 14 XCM_13825 PF00128 Alpha amylase, catalytic domain XCM_13840 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCM_13840 PF14508 Glycosyl-hydrolase 97 N-terminal XCM_13840 PF10566 Glycoside hydrolase 97 XCM_1385 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCM_13860 PF00128 Alpha amylase, catalytic domain XCM_13870 PF07238 PilZ domain XCM_13870 PF07317 Flagellar regulator YcgR XCM_13875 PF01584 CheW-like domain XCM_13890 PF00672 HAMP domain XCM_13890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_13890 PF02203 Tar ligand binding domain homologue XCM_13895 PF03705 CheR methyltransferase, all-alpha domain XCM_13895 PF01739 CheR methyltransferase, SAM binding domain XCM_13900 PF03975 CheD chemotactic sensory transduction XCM_13905 PF00072 Response regulator receiver domain XCM_13905 PF01339 CheB methylesterase XCM_13910 PF03707 Bacterial signalling protein N terminal repeat XCM_13910 PF00990 Diguanylate cyclase, GGDEF domain XCM_13910 PF00563 EAL domain XCM_13915 PF00561 alpha/beta hydrolase fold XCM_13920 PF11791 Aconitate B N-terminal domain XCM_13920 PF06434 Aconitate hydratase 2 N-terminus XCM_13920 PF00330 Aconitase family (aconitate hydratase) XCM_13935 PF00330 Aconitase family (aconitate hydratase) XCM_13935 PF00694 Aconitase C-terminal domain XCM_13945 PF13193 AMP-binding enzyme C-terminal domain XCM_13945 PF00501 AMP-binding enzyme XCM_1395 PF01820 D-ala D-ala ligase N-terminus XCM_1395 PF07478 D-ala D-ala ligase C-terminus XCM_13955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_13955 PF00512 His Kinase A (phospho-acceptor) domain XCM_13955 PF01627 Hpt domain XCM_13955 PF00072 Response regulator receiver domain XCM_13960 PF00512 His Kinase A (phospho-acceptor) domain XCM_13960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_13960 PF01627 Hpt domain XCM_13960 PF00072 Response regulator receiver domain XCM_13965 PF00072 Response regulator receiver domain XCM_13970 PF01336 OB-fold nucleic acid binding domain XCM_13970 PF00152 tRNA synthetases class II (D, K and N) XCM_13975 PF03462 PCRF domain XCM_13975 PF00472 RF-1 domain XCM_13980 PF00072 Response regulator receiver domain XCM_13980 PF04397 LytTr DNA-binding domain XCM_13990 PF01368 DHH family XCM_13990 PF17768 RecJ OB domain XCM_13990 PF02272 DHHA1 domain XCM_14000 PF03449 Transcription elongation factor, N-terminal XCM_14000 PF01272 Transcription elongation factor, GreA/GreB, C-term XCM_14005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCM_14005 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XCM_14005 PF02142 MGS-like domain XCM_14015 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XCM_14015 PF00117 Glutamine amidotransferase class-I XCM_14020 PF05173 Dihydrodipicolinate reductase, C-terminus XCM_14020 PF01113 Dihydrodipicolinate reductase, N-terminus XCM_14025 PF03473 MOSC domain XCM_14025 PF03475 3-alpha domain XCM_14030 PF00155 Aminotransferase class I and II XCM_14045 PF07664 Ferrous iron transport protein B C terminus XCM_14045 PF02421 Ferrous iron transport protein B XCM_14045 PF07670 Nucleoside recognition XCM_1405 PF03109 ABC1 family XCM_14055 PF00378 Enoyl-CoA hydratase/isomerase XCM_14065 PF00682 HMGL-like XCM_14070 PF00106 short chain dehydrogenase XCM_14075 PF01132 Elongation factor P (EF-P) OB domain XCM_14075 PF08207 Elongation factor P (EF-P) KOW-like domain XCM_14075 PF09285 Elongation factor P, C-terminal XCM_14095 PF02913 FAD linked oxidases, C-terminal domain XCM_14095 PF01565 FAD binding domain XCM_14100 PF01842 ACT domain XCM_14100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCM_14100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCM_14110 PF13520 Amino acid permease XCM_14115 PF13520 Amino acid permease XCM_14120 PF00596 Class II Aldolase and Adducin N-terminal domain XCM_14125 PF03079 ARD/ARD' family XCM_14145 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XCM_14145 PF01502 Phosphoribosyl-AMP cyclohydrolase XCM_1415 PF00849 RNA pseudouridylate synthase XCM_14150 PF00977 Histidine biosynthesis protein XCM_14155 PF00977 Histidine biosynthesis protein XCM_14160 PF00117 Glutamine amidotransferase class-I XCM_14165 PF00475 Imidazoleglycerol-phosphate dehydratase XCM_14170 PF00155 Aminotransferase class I and II XCM_14175 PF00815 Histidinol dehydrogenase XCM_14180 PF01634 ATP phosphoribosyltransferase XCM_14180 PF08029 HisG, C-terminal domain XCM_14190 PF03129 Anticodon binding domain XCM_14190 PF13393 Histidyl-tRNA synthetase XCM_14195 PF00027 Cyclic nucleotide-binding domain XCM_14195 PF13545 Crp-like helix-turn-helix domain XCM_14205 PF14821 Threonine synthase N terminus XCM_14205 PF00291 Pyridoxal-phosphate dependent enzyme XCM_14215 PF08544 GHMP kinases C terminal XCM_14215 PF00288 GHMP kinases N terminal domain XCM_14220 PF03447 Homoserine dehydrogenase, NAD binding domain XCM_14220 PF13840 ACT domain XCM_14220 PF01842 ACT domain XCM_14220 PF00742 Homoserine dehydrogenase XCM_14220 PF00696 Amino acid kinase family XCM_14230 PF01527 Transposase XCM_14240 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain XCM_14240 PF13018 Extended Signal Peptide of Type V secretion system XCM_14240 PF05594 Haemagluttinin repeat XCM_14240 PF13332 Hemagglutinin repeat XCM_14240 PF05860 haemagglutination activity domain XCM_1425 PF00472 RF-1 domain XCM_14255 PF13332 Hemagglutinin repeat XCM_14255 PF04829 Pre-toxin domain with VENN motif XCM_14255 PF05594 Haemagluttinin repeat XCM_1435 PF01112 Asparaginase XCM_14360 PF03466 LysR substrate binding domain XCM_14360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_14365 PF02525 Flavodoxin-like fold XCM_14370 PF02403 Seryl-tRNA synthetase N-terminal domain XCM_14370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCM_14375 PF03544 Gram-negative bacterial TonB protein C-terminal XCM_14385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCM_14390 PF00800 Prephenate dehydratase XCM_14390 PF01842 ACT domain XCM_14390 PF01817 Chorismate mutase type II XCM_14395 PF00266 Aminotransferase class-V XCM_1440 PF01432 Peptidase family M3 XCM_14400 PF00174 Oxidoreductase molybdopterin binding domain XCM_14405 PF01794 Ferric reductase like transmembrane component XCM_14430 PF07702 UTRA domain XCM_14430 PF00392 Bacterial regulatory proteins, gntR family XCM_14440 PF07969 Amidohydrolase family XCM_14445 PF00221 Aromatic amino acid lyase XCM_1445 PF12706 Beta-lactamase superfamily domain XCM_14455 PF17392 Urocanase C-terminal domain XCM_14455 PF17391 Urocanase N-terminal domain XCM_14455 PF01175 Urocanase Rossmann-like domain XCM_14465 PF13360 PQQ-like domain XCM_14470 PF03989 DNA gyrase C-terminal domain, beta-propeller XCM_14470 PF00521 DNA gyrase/topoisomerase IV, subunit A XCM_14475 PF01008 Initiation factor 2 subunit family XCM_14485 PF00152 tRNA synthetases class II (D, K and N) XCM_14490 PF12826 Helix-hairpin-helix motif XCM_14490 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XCM_14490 PF01653 NAD-dependent DNA ligase adenylation domain XCM_14490 PF03120 NAD-dependent DNA ligase OB-fold domain XCM_14490 PF00533 BRCA1 C Terminus (BRCT) domain XCM_14495 PF00155 Aminotransferase class I and II XCM_14505 PF04354 ZipA, C-terminal FtsZ-binding domain XCM_14510 PF02463 RecF/RecN/SMC N terminal domain XCM_14515 PF03948 Ribosomal protein L9, C-terminal domain XCM_14515 PF01281 Ribosomal protein L9, N-terminal domain XCM_14520 PF01084 Ribosomal protein S18 XCM_14525 PF01250 Ribosomal protein S6 XCM_14530 PF01521 Iron-sulphur cluster biosynthesis XCM_14535 PF01336 OB-fold nucleic acid binding domain XCM_14535 PF00152 tRNA synthetases class II (D, K and N) XCM_14555 PF04299 Putative FMN-binding domain XCM_14570 PF00072 Response regulator receiver domain XCM_14570 PF00196 Bacterial regulatory proteins, luxR family XCM_1460 PF12833 Helix-turn-helix domain XCM_14610 PF00484 Carbonic anhydrase XCM_14615 PF06052 3-hydroxyanthranilic acid dioxygenase XCM_14625 PF00266 Aminotransferase class-V XCM_14630 PF01494 FAD binding domain XCM_14635 PF08411 Exonuclease C-terminal XCM_14635 PF00929 Exonuclease XCM_1465 PF00999 Sodium/hydrogen exchanger family XCM_14655 PF01513 ATP-NAD kinase XCM_14660 PF02926 THUMP domain XCM_14660 PF01170 Putative RNA methylase family UPF0020 XCM_14660 PF10672 S-adenosylmethionine-dependent methyltransferase XCM_14665 PF16326 ABC transporter C-terminal domain XCM_14665 PF00005 ABC transporter XCM_1470 PF03466 LysR substrate binding domain XCM_1470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_14700 PF00581 Rhodanese-like domain XCM_14705 PF00293 NUDIX domain XCM_14710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCM_14710 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCM_14715 PF00378 Enoyl-CoA hydratase/isomerase XCM_14725 PF10576 Iron-sulfur binding domain of endonuclease III XCM_14725 PF00633 Helix-hairpin-helix motif XCM_14725 PF00730 HhH-GPD superfamily base excision DNA repair protein XCM_14735 PF00916 Sulfate permease family XCM_14735 PF01740 STAS domain XCM_14740 PF00484 Carbonic anhydrase XCM_1475 PF01274 Malate synthase XCM_14755 PF12849 PBP superfamily domain XCM_14760 PF12849 PBP superfamily domain XCM_14765 PF00528 Binding-protein-dependent transport system inner membrane component XCM_14770 PF00528 Binding-protein-dependent transport system inner membrane component XCM_14775 PF00005 ABC transporter XCM_14780 PF01895 PhoU domain XCM_14790 PF00929 Exonuclease XCM_1480 PF00463 Isocitrate lyase family XCM_14800 PF00990 Diguanylate cyclase, GGDEF domain XCM_14805 PF00588 SpoU rRNA Methylase family XCM_14805 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCM_14815 PF17876 Cold shock domain XCM_14815 PF08461 Ribonuclease R winged-helix domain XCM_14815 PF08206 Ribonuclease B OB domain XCM_14815 PF00773 RNB domain XCM_14815 PF00575 S1 RNA binding domain XCM_14825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCM_14825 PF02770 Acyl-CoA dehydrogenase, middle domain XCM_14825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_14830 PF01209 ubiE/COQ5 methyltransferase family XCM_14835 PF02574 Homocysteine S-methyltransferase XCM_14835 PF00809 Pterin binding enzyme XCM_14840 PF02310 B12 binding domain XCM_14840 PF02607 B12 binding domain XCM_14840 PF02965 Vitamin B12 dependent methionine synthase, activation domain XCM_14840 PF00809 Pterin binding enzyme XCM_14840 PF02574 Homocysteine S-methyltransferase XCM_1485 PF00990 Diguanylate cyclase, GGDEF domain XCM_14850 PF00809 Pterin binding enzyme XCM_14850 PF02310 B12 binding domain XCM_14850 PF02607 B12 binding domain XCM_14850 PF02965 Vitamin B12 dependent methionine synthase, activation domain XCM_14850 PF02574 Homocysteine S-methyltransferase XCM_14860 PF00294 pfkB family carbohydrate kinase XCM_14865 PF07690 Major Facilitator Superfamily XCM_14870 PF00356 Bacterial regulatory proteins, lacI family XCM_14885 PF04102 SlyX XCM_14890 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCM_14890 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCM_14890 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCM_14895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCM_14895 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCM_14900 PF00255 Glutathione peroxidase XCM_14910 PF00392 Bacterial regulatory proteins, gntR family XCM_14915 PF00005 ABC transporter XCM_14940 PF00206 Lyase XCM_14940 PF10415 Fumarase C C-terminus XCM_14945 PF00571 CBS domain XCM_14945 PF03471 Transporter associated domain XCM_14945 PF01595 Cyclin M transmembrane N-terminal domain XCM_14955 PF08328 Adenylosuccinate lyase C-terminal XCM_14955 PF00206 Lyase XCM_14965 PF08007 Cupin superfamily protein XCM_14975 PF16078 2-oxoglutarate dehydrogenase N-terminus XCM_14975 PF00676 Dehydrogenase E1 component XCM_14975 PF16870 2-oxoglutarate dehydrogenase C-terminal XCM_14975 PF02779 Transketolase, pyrimidine binding domain XCM_14980 PF00364 Biotin-requiring enzyme XCM_14980 PF02817 e3 binding domain XCM_14980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCM_14985 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_14985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCM_14990 PF03641 Possible lysine decarboxylase XCM_14995 PF01205 Uncharacterized protein family UPF0029 XCM_15000 PF00664 ABC transporter transmembrane region XCM_15000 PF00005 ABC transporter XCM_15005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_15005 PF03466 LysR substrate binding domain XCM_15010 PF03412 Peptidase C39 family XCM_15010 PF00005 ABC transporter XCM_15010 PF00664 ABC transporter transmembrane region XCM_15035 PF08543 Phosphomethylpyrimidine kinase XCM_15040 PF00226 DnaJ domain XCM_15040 PF01556 DnaJ C terminal domain XCM_15040 PF00684 DnaJ central domain XCM_15045 PF00012 Hsp70 protein XCM_1505 PF00326 Prolyl oligopeptidase family XCM_15050 PF01025 GrpE XCM_15055 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XCM_15055 PF01628 HrcA protein C terminal domain XCM_15060 PF02463 RecF/RecN/SMC N terminal domain XCM_15065 PF01475 Ferric uptake regulator family XCM_15070 PF04355 SmpA / OmlA family XCM_15075 PF03658 RnfH family Ubiquitin XCM_15080 PF03364 Polyketide cyclase / dehydrase and lipid transport XCM_15085 PF01668 SmpB protein XCM_15090 PF00082 Subtilase family XCM_1510 PF18140 Propionyl-coenzyme A carboxylase BT domain XCM_1510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCM_1510 PF00364 Biotin-requiring enzyme XCM_1510 PF02785 Biotin carboxylase C-terminal domain XCM_1510 PF00289 Biotin carboxylase, N-terminal domain XCM_15115 PF00990 Diguanylate cyclase, GGDEF domain XCM_15125 PF00990 Diguanylate cyclase, GGDEF domain XCM_15130 PF02321 Outer membrane efflux protein XCM_15135 PF00106 short chain dehydrogenase XCM_15140 PF00873 AcrB/AcrD/AcrF family XCM_15145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_1515 PF01039 Carboxyl transferase domain XCM_15155 PF03466 LysR substrate binding domain XCM_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_15165 PF05736 OprF membrane domain XCM_15165 PF00691 OmpA family XCM_15170 PF00875 DNA photolyase XCM_15170 PF03441 FAD binding domain of DNA photolyase XCM_15175 PF03796 DnaB-like helicase C terminal domain XCM_15175 PF00772 DnaB-like helicase N terminal domain XCM_15180 PF03358 NADPH-dependent FMN reductase XCM_15185 PF00733 Asparagine synthase XCM_15185 PF13537 Glutamine amidotransferase domain XCM_15190 PF00043 Glutathione S-transferase, C-terminal domain XCM_15190 PF02798 Glutathione S-transferase, N-terminal domain XCM_1520 PF02770 Acyl-CoA dehydrogenase, middle domain XCM_1520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCM_1520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_15205 PF02770 Acyl-CoA dehydrogenase, middle domain XCM_15205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCM_15205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_15220 PF01026 TatD related DNase XCM_15225 PF00899 ThiF family XCM_15240 PF00313 'Cold-shock' DNA-binding domain XCM_15250 PF02253 Phospholipase A1 XCM_15255 PF00484 Carbonic anhydrase XCM_15265 PF05681 Fumarate hydratase (Fumerase) XCM_15265 PF05683 Fumarase C-terminus XCM_15270 PF00005 ABC transporter XCM_15275 PF00970 Oxidoreductase FAD-binding domain XCM_15275 PF00175 Oxidoreductase NAD-binding domain XCM_15280 PF00255 Glutathione peroxidase XCM_15285 PF01432 Peptidase family M3 XCM_15295 PF12802 MarR family XCM_15335 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCM_15335 PF00933 Glycosyl hydrolase family 3 N terminal domain XCM_15335 PF14310 Fibronectin type III-like domain XCM_15340 PF07690 Major Facilitator Superfamily XCM_15345 PF00529 HlyD membrane-fusion protein of T1SS XCM_15345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_15350 PF02321 Outer membrane efflux protein XCM_15365 PF00521 DNA gyrase/topoisomerase IV, subunit A XCM_15365 PF03989 DNA gyrase C-terminal domain, beta-propeller XCM_15370 PF05724 Thiopurine S-methyltransferase (TPMT) XCM_15380 PF05724 Thiopurine S-methyltransferase (TPMT) XCM_15385 PF00210 Ferritin-like domain XCM_15390 PF01804 Penicillin amidase XCM_15400 PF07715 TonB-dependent Receptor Plug Domain XCM_15400 PF00593 TonB dependent receptor XCM_15410 PF00733 Asparagine synthase XCM_15410 PF13537 Glutamine amidotransferase domain XCM_15415 PF01546 Peptidase family M20/M25/M40 XCM_15415 PF07687 Peptidase dimerisation domain XCM_15420 PF03960 ArsC family XCM_15425 PF00132 Bacterial transferase hexapeptide (six repeats) XCM_15425 PF14602 Hexapeptide repeat of succinyl-transferase XCM_15425 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XCM_15430 PF08335 GlnD PII-uridylyltransferase XCM_15430 PF01966 HD domain XCM_15430 PF01909 Nucleotidyltransferase domain XCM_15435 PF00557 Metallopeptidase family M24 XCM_15470 PF00318 Ribosomal protein S2 XCM_15475 PF00889 Elongation factor TS XCM_15480 PF00072 Response regulator receiver domain XCM_15480 PF00990 Diguanylate cyclase, GGDEF domain XCM_15485 PF00696 Amino acid kinase family XCM_15490 PF01765 Ribosome recycling factor XCM_15495 PF01255 Putative undecaprenyl diphosphate synthase XCM_15505 PF13288 DXP reductoisomerase C-terminal domain XCM_15505 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XCM_15505 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XCM_15510 PF17820 PDZ domain XCM_15510 PF02163 Peptidase family M50 XCM_15515 PF01103 Surface antigen XCM_15515 PF07244 Surface antigen variable number repeat XCM_15525 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XCM_15525 PF00132 Bacterial transferase hexapeptide (six repeats) XCM_15530 PF07977 FabA-like domain XCM_15535 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XCM_15535 PF00132 Bacterial transferase hexapeptide (six repeats) XCM_15540 PF02684 Lipid-A-disaccharide synthetase XCM_15545 PF01351 Ribonuclease HII XCM_15550 PF01336 OB-fold nucleic acid binding domain XCM_15550 PF02811 PHP domain XCM_15550 PF14579 Helix-hairpin-helix motif XCM_15550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCM_15550 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCM_15555 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XCM_15570 PF03653 Uncharacterised protein family (UPF0093) XCM_15590 PF03551 Transcriptional regulator PadR-like family XCM_15610 PF02592 Putative vitamin uptake transporter XCM_15620 PF02574 Homocysteine S-methyltransferase XCM_15625 PF00324 Amino acid permease XCM_15630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCM_15635 PF00005 ABC transporter XCM_15635 PF13732 Domain of unknown function (DUF4162) XCM_15650 PF01588 Putative tRNA binding domain XCM_15650 PF09334 tRNA synthetases class I (M) XCM_15660 PF04060 Putative Fe-S cluster XCM_15675 PF04542 Sigma-70 region 2 XCM_15675 PF04545 Sigma-70, region 4 XCM_15720 PF01042 Endoribonuclease L-PSP XCM_15730 PF09924 Uncharacterised conserved protein (DUF2156) XCM_15730 PF03706 Lysylphosphatidylglycerol synthase TM region XCM_1575 PF02492 CobW/HypB/UreG, nucleotide-binding domain XCM_1575 PF07683 Cobalamin synthesis protein cobW C-terminal domain XCM_15770 PF07690 Major Facilitator Superfamily XCM_15775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCM_15780 PF08274 PhnA Zinc-Ribbon XCM_15780 PF03831 PhnA domain XCM_15790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCM_15810 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCM_15820 PF07043 Protein of unknown function (DUF1328) XCM_15825 PF01863 Protein of unknown function DUF45 XCM_15840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XCM_15840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XCM_15845 PF00082 Subtilase family XCM_15845 PF12951 Passenger-associated-transport-repeat XCM_15845 PF03797 Autotransporter beta-domain XCM_15850 PF02803 Thiolase, C-terminal domain XCM_15850 PF00108 Thiolase, N-terminal domain XCM_15865 PF00072 Response regulator receiver domain XCM_15865 PF00990 Diguanylate cyclase, GGDEF domain XCM_15880 PF04675 DNA ligase N terminus XCM_15880 PF01068 ATP dependent DNA ligase domain XCM_15880 PF04679 ATP dependent DNA ligase C terminal region XCM_15890 PF01068 ATP dependent DNA ligase domain XCM_15890 PF04679 ATP dependent DNA ligase C terminal region XCM_15890 PF04675 DNA ligase N terminus XCM_15895 PF00270 DEAD/DEAH box helicase XCM_15895 PF00271 Helicase conserved C-terminal domain XCM_15895 PF08494 DEAD/H associated XCM_15910 PF01494 FAD binding domain XCM_15915 PF00313 'Cold-shock' DNA-binding domain XCM_15920 PF01048 Phosphorylase superfamily XCM_15925 PF00156 Phosphoribosyl transferase domain XCM_15930 PF00933 Glycosyl hydrolase family 3 N terminal domain XCM_15935 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XCM_15940 PF01593 Flavin containing amine oxidoreductase XCM_15945 PF01323 DSBA-like thioredoxin domain XCM_1595 PF03969 AFG1-like ATPase XCM_15950 PF01928 CYTH domain XCM_15955 PF05958 tRNA (Uracil-5-)-methyltransferase XCM_15965 PF11967 Recombination protein O N terminal XCM_15965 PF02565 Recombination protein O C terminal XCM_15970 PF07650 KH domain XCM_15970 PF01926 50S ribosome-binding GTPase XCM_15975 PF00035 Double-stranded RNA binding motif XCM_15975 PF14622 Ribonuclease-III-like XCM_15985 PF10502 Signal peptidase, peptidase S26 XCM_15990 PF00679 Elongation factor G C-terminus XCM_15990 PF00009 Elongation factor Tu GTP binding domain XCM_15990 PF03144 Elongation factor Tu domain 2 XCM_15990 PF06421 GTP-binding protein LepA C-terminus XCM_15995 PF13180 PDZ domain XCM_1600 PF01047 MarR family XCM_16005 PF04542 Sigma-70 region 2 XCM_16005 PF08281 Sigma-70, region 4 XCM_16010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCM_16010 PF00378 Enoyl-CoA hydratase/isomerase XCM_16010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCM_16015 PF01545 Cation efflux family XCM_16020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCM_16020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCM_16025 PF00378 Enoyl-CoA hydratase/isomerase XCM_16025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCM_16025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCM_16030 PF00378 Enoyl-CoA hydratase/isomerase XCM_16035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_16035 PF02770 Acyl-CoA dehydrogenase, middle domain XCM_16035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCM_16040 PF00171 Aldehyde dehydrogenase family XCM_16045 PF01381 Helix-turn-helix XCM_16045 PF09856 Predicted transcriptional regulator (DUF2083) XCM_16045 PF06114 IrrE N-terminal-like domain XCM_1605 PF02566 OsmC-like protein XCM_16055 PF07745 Glycosyl hydrolase family 53 XCM_16065 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCM_16065 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCM_16065 PF00703 Glycosyl hydrolases family 2 XCM_16065 PF16355 Domain of unknown function (DUF4982) XCM_16065 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCM_16085 PF05593 RHS Repeat XCM_16085 PF03527 RHS protein XCM_16090 PF13333 Integrase core domain XCM_16090 PF00665 Integrase core domain XCM_16090 PF13276 HTH-like domain XCM_16095 PF01527 Transposase XCM_16115 PF05188 MutS domain II XCM_16115 PF05190 MutS family domain IV XCM_16115 PF01624 MutS domain I XCM_16115 PF00488 MutS domain V XCM_16115 PF05192 MutS domain III XCM_16125 PF00141 Peroxidase XCM_16130 PF01479 S4 domain XCM_16145 PF01554 MatE XCM_16150 PF01245 Ribosomal protein L19 XCM_16155 PF01746 tRNA (Guanine-1)-methyltransferase XCM_16160 PF05239 PRC-barrel domain XCM_16160 PF01782 RimM N-terminal domain XCM_16165 PF00886 Ribosomal protein S16 XCM_16170 PF01063 Amino-transferase class IV XCM_16175 PF03060 Nitronate monooxygenase XCM_16180 PF00448 SRP54-type protein, GTPase domain XCM_16180 PF02881 SRP54-type protein, helical bundle domain XCM_16180 PF02978 Signal peptide binding domain XCM_16185 PF01578 Cytochrome C assembly protein XCM_16190 PF01263 Aldose 1-epimerase XCM_16195 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XCM_16205 PF00072 Response regulator receiver domain XCM_16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16210 PF00072 Response regulator receiver domain XCM_16210 PF13426 PAS domain XCM_16215 PF00672 HAMP domain XCM_16215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16215 PF00512 His Kinase A (phospho-acceptor) domain XCM_16215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCM_16215 PF01627 Hpt domain XCM_16215 PF00072 Response regulator receiver domain XCM_16220 PF03705 CheR methyltransferase, all-alpha domain XCM_16220 PF01739 CheR methyltransferase, SAM binding domain XCM_16225 PF01339 CheB methylesterase XCM_16230 PF13493 Domain of unknown function (DUF4118) XCM_16230 PF02702 Osmosensitive K+ channel His kinase sensor domain XCM_16230 PF00512 His Kinase A (phospho-acceptor) domain XCM_16230 PF13492 GAF domain XCM_16230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16235 PF07237 Protein of unknown function (DUF1428) XCM_16240 PF00085 Thioredoxin XCM_16245 PF00593 TonB dependent receptor XCM_16245 PF07715 TonB-dependent Receptor Plug Domain XCM_16250 PF04616 Glycosyl hydrolases family 43 XCM_16250 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCM_16255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16255 PF00512 His Kinase A (phospho-acceptor) domain XCM_16255 PF08448 PAS fold XCM_16255 PF13188 PAS domain XCM_16255 PF00072 Response regulator receiver domain XCM_16260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16260 PF01627 Hpt domain XCM_16260 PF00512 His Kinase A (phospho-acceptor) domain XCM_16260 PF00672 HAMP domain XCM_16260 PF17149 Periplasmic sensor domain found in signal transduction proteins XCM_16260 PF00072 Response regulator receiver domain XCM_16270 PF13581 Histidine kinase-like ATPase domain XCM_16275 PF01740 STAS domain XCM_16280 PF08678 Rsbr N terminal XCM_16280 PF01740 STAS domain XCM_16295 PF12833 Helix-turn-helix domain XCM_1630 PF00107 Zinc-binding dehydrogenase XCM_1630 PF16884 N-terminal domain of oxidoreductase XCM_16305 PF05656 Protein of unknown function (DUF805) XCM_16310 PF18073 Rubredoxin metal binding domain XCM_16320 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XCM_16325 PF00510 Cytochrome c oxidase subunit III XCM_16330 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCM_16335 PF06481 COX Aromatic Rich Motif XCM_16335 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCM_16340 PF02401 LytB protein XCM_16345 PF01252 Signal peptidase (SPase) II XCM_1635 PF00248 Aldo/keto reductase family XCM_16350 PF08264 Anticodon-binding domain of tRNA XCM_16350 PF00133 tRNA synthetases class I (I, L, M and V) XCM_16350 PF06827 Zinc finger found in FPG and IleRS XCM_16355 PF06574 FAD synthetase XCM_16355 PF01687 Riboflavin kinase XCM_16360 PF03023 Lipid II flippase MurJ XCM_16365 PF01649 Ribosomal protein S20 XCM_16370 PF01926 50S ribosome-binding GTPase XCM_16370 PF01018 GTP1/OBG XCM_16375 PF01016 Ribosomal L27 protein XCM_16380 PF00829 Ribosomal prokaryotic L21 protein XCM_16385 PF17760 UvrA interaction domain XCM_16385 PF00005 ABC transporter XCM_16385 PF17755 UvrA DNA-binding domain XCM_16400 PF00378 Enoyl-CoA hydratase/isomerase XCM_16430 PF04377 Arginine-tRNA-protein transferase, C terminus XCM_16430 PF04376 Arginine-tRNA-protein transferase, N terminus XCM_16440 PF02222 ATP-grasp domain XCM_1645 PF00849 RNA pseudouridylate synthase XCM_16465 PF00730 HhH-GPD superfamily base excision DNA repair protein XCM_16480 PF00196 Bacterial regulatory proteins, luxR family XCM_16480 PF00072 Response regulator receiver domain XCM_16485 PF07730 Histidine kinase XCM_16495 PF03775 Septum formation inhibitor MinC, C-terminal domain XCM_16495 PF05209 Septum formation inhibitor MinC, N-terminal domain XCM_16500 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCM_16505 PF03776 Septum formation topological specificity factor MinE XCM_16515 PF08521 Two-component sensor kinase N-terminal XCM_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16515 PF00512 His Kinase A (phospho-acceptor) domain XCM_16520 PF00072 Response regulator receiver domain XCM_16520 PF00486 Transcriptional regulatory protein, C terminal XCM_16535 PF08019 Phosphoethanolamine transferase EptA/EptB XCM_16535 PF00884 Sulfatase XCM_16550 PF07690 Major Facilitator Superfamily XCM_16555 PF02347 Glycine cleavage system P-protein XCM_16560 PF00135 Carboxylesterase family XCM_16565 PF00248 Aldo/keto reductase family XCM_16570 PF18011 C-terminal domain found in long catalases XCM_16570 PF06628 Catalase-related immune-responsive XCM_16570 PF00199 Catalase XCM_16585 PF01527 Transposase XCM_16590 PF13276 HTH-like domain XCM_16590 PF00665 Integrase core domain XCM_16590 PF13333 Integrase core domain XCM_1660 PF00593 TonB dependent receptor XCM_16600 PF00326 Prolyl oligopeptidase family XCM_16600 PF07676 WD40-like Beta Propeller Repeat XCM_16600 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCM_16615 PF03169 OPT oligopeptide transporter protein XCM_16625 PF00326 Prolyl oligopeptidase family XCM_16630 PF02811 PHP domain XCM_16630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCM_16630 PF14579 Helix-hairpin-helix motif XCM_16630 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCM_16650 PF01726 LexA DNA binding domain XCM_16650 PF00717 Peptidase S24-like XCM_16690 PF02794 RTX toxin acyltransferase family XCM_16695 PF07690 Major Facilitator Superfamily XCM_16710 PF01527 Transposase XCM_16715 PF13276 HTH-like domain XCM_16715 PF00665 Integrase core domain XCM_16715 PF13333 Integrase core domain XCM_16730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16730 PF00512 His Kinase A (phospho-acceptor) domain XCM_16745 PF00657 GDSL-like Lipase/Acylhydrolase XCM_16745 PF03797 Autotransporter beta-domain XCM_1675 PF00270 DEAD/DEAH box helicase XCM_1675 PF04408 Helicase associated domain (HA2) XCM_1675 PF08482 ATP-dependent helicase C-terminal XCM_1675 PF00271 Helicase conserved C-terminal domain XCM_16755 PF05690 Thiazole biosynthesis protein ThiG XCM_16760 PF02390 Putative methyltransferase XCM_16765 PF03600 Citrate transporter XCM_16765 PF02080 TrkA-C domain XCM_16780 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCM_16785 PF01741 Large-conductance mechanosensitive channel, MscL XCM_16795 PF00356 Bacterial regulatory proteins, lacI family XCM_1680 PF07308 Protein of unknown function (DUF1456) XCM_16805 PF00703 Glycosyl hydrolases family 2 XCM_16805 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCM_16805 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XCM_16810 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCM_16810 PF14508 Glycosyl-hydrolase 97 N-terminal XCM_16810 PF10566 Glycoside hydrolase 97 XCM_16815 PF00135 Carboxylesterase family XCM_16820 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCM_16820 PF00588 SpoU rRNA Methylase family XCM_16830 PF11838 ERAP1-like C-terminal domain XCM_16830 PF01433 Peptidase family M1 domain XCM_16835 PF00873 AcrB/AcrD/AcrF family XCM_16840 PF00529 HlyD membrane-fusion protein of T1SS XCM_16840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_16845 PF00009 Elongation factor Tu GTP binding domain XCM_1685 PF00576 HIUase/Transthyretin family XCM_16850 PF01507 Phosphoadenosine phosphosulfate reductase family XCM_16855 PF00667 FAD binding domain XCM_16855 PF00258 Flavodoxin XCM_16855 PF00175 Oxidoreductase NAD-binding domain XCM_16860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XCM_16860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XCM_16865 PF01507 Phosphoadenosine phosphosulfate reductase family XCM_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_16885 PF00072 Response regulator receiver domain XCM_16885 PF01627 Hpt domain XCM_16885 PF00512 His Kinase A (phospho-acceptor) domain XCM_1690 PF13454 FAD-NAD(P)-binding XCM_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_16900 PF03466 LysR substrate binding domain XCM_16905 PF14824 Sirohaem biosynthesis protein central XCM_16905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCM_16905 PF10414 Sirohaem synthase dimerisation region XCM_16910 PF00291 Pyridoxal-phosphate dependent enzyme XCM_16920 PF01661 Macro domain XCM_16925 PF00274 Fructose-bisphosphate aldolase class-I XCM_16930 PF00224 Pyruvate kinase, barrel domain XCM_16930 PF02887 Pyruvate kinase, alpha/beta domain XCM_16935 PF13419 Haloacid dehalogenase-like hydrolase XCM_16940 PF00162 Phosphoglycerate kinase XCM_1695 PF09349 OHCU decarboxylase XCM_1695 PF01014 Uricase XCM_16965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XCM_16965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XCM_16975 PF03922 OmpW family XCM_16980 PF03922 OmpW family XCM_16990 PF04273 Putative phosphatase (DUF442) XCM_16990 PF00753 Metallo-beta-lactamase superfamily XCM_17000 PF00528 Binding-protein-dependent transport system inner membrane component XCM_17005 PF03459 TOBE domain XCM_17005 PF00005 ABC transporter XCM_17040 PF01476 LysM domain XCM_17040 PF03734 L,D-transpeptidase catalytic domain XCM_17045 PF04225 Opacity-associated protein A LysM-like domain XCM_17045 PF01551 Peptidase family M23 XCM_17060 PF07715 TonB-dependent Receptor Plug Domain XCM_17060 PF00593 TonB dependent receptor XCM_17065 PF12146 Serine aminopeptidase, S33 XCM_17070 PF02779 Transketolase, pyrimidine binding domain XCM_17070 PF02780 Transketolase, C-terminal domain XCM_17070 PF00456 Transketolase, thiamine diphosphate binding domain XCM_17075 PF00375 Sodium:dicarboxylate symporter family XCM_17085 PF00092 von Willebrand factor type A domain XCM_17085 PF07584 Aerotolerance regulator N-terminal XCM_1710 PF00266 Aminotransferase class-V XCM_17105 PF17863 AAA lid domain XCM_17105 PF07726 ATPase family associated with various cellular activities (AAA) XCM_17110 PF11741 AMIN domain XCM_17110 PF00263 Bacterial type II and III secretion system protein XCM_17110 PF03958 Bacterial type II/III secretion system short domain XCM_17110 PF07660 Secretin and TonB N terminus short domain XCM_17115 PF04351 Pilus assembly protein, PilP XCM_17120 PF04350 Pilus assembly protein, PilO XCM_17125 PF05137 Fimbrial assembly protein (PilN) XCM_17130 PF11104 Type IV pilus assembly protein PilM; XCM_17135 PF00912 Transglycosylase XCM_17135 PF00905 Penicillin binding protein transpeptidase domain XCM_17135 PF17092 Penicillin-binding protein OB-like domain XCM_17145 PF00285 Citrate synthase, C-terminal domain XCM_1715 PF07687 Peptidase dimerisation domain XCM_1715 PF01546 Peptidase family M20/M25/M40 XCM_17150 PF01197 Ribosomal protein L31 XCM_17155 PF01156 Inosine-uridine preferring nucleoside hydrolase XCM_17160 PF17191 RecG wedge domain XCM_17160 PF00271 Helicase conserved C-terminal domain XCM_17160 PF00270 DEAD/DEAH box helicase XCM_17165 PF01042 Endoribonuclease L-PSP XCM_17170 PF13291 ACT domain XCM_17170 PF04607 Region found in RelA / SpoT proteins XCM_17170 PF02824 TGS domain XCM_17175 PF01192 RNA polymerase Rpb6 XCM_17180 PF00625 Guanylate kinase XCM_17185 PF08340 Domain of unknown function (DUF1732) XCM_17185 PF03755 YicC-like family, N-terminal region XCM_17190 PF03725 3' exoribonuclease family, domain 2 XCM_17190 PF01138 3' exoribonuclease family, domain 1 XCM_1720 PF03466 LysR substrate binding domain XCM_1720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_17200 PF01725 Ham1 family XCM_17205 PF06969 HemN C-terminal domain XCM_17205 PF04055 Radical SAM superfamily XCM_17220 PF00557 Metallopeptidase family M24 XCM_17230 PF05195 Aminopeptidase P, N-terminal domain XCM_17230 PF00557 Metallopeptidase family M24 XCM_17235 PF03695 Uncharacterised protein family (UPF0149) XCM_17245 PF05164 Cell division protein ZapA XCM_1725 PF07690 Major Facilitator Superfamily XCM_17250 PF01812 5-formyltetrahydrofolate cyclo-ligase family XCM_17260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XCM_17270 PF13369 Transglutaminase-like superfamily XCM_17275 PF00301 Rubredoxin XCM_17280 PF02581 Thiamine monophosphate synthase XCM_17290 PF00202 Aminotransferase class-III XCM_17300 PF17874 MalT-like TPR region XCM_17300 PF00196 Bacterial regulatory proteins, luxR family XCM_17305 PF00127 Copper binding proteins, plastocyanin/azurin family XCM_17310 PF00155 Aminotransferase class I and II XCM_17320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCM_17320 PF00034 Cytochrome c XCM_17325 PF01593 Flavin containing amine oxidoreductase XCM_17340 PF00202 Aminotransferase class-III XCM_17345 PF00027 Cyclic nucleotide-binding domain XCM_17345 PF00520 Ion transport protein XCM_17365 PF01569 PAP2 superfamily XCM_17370 PF01062 Bestrophin, RFP-TM, chloride channel XCM_17380 PF08245 Mur ligase middle domain XCM_17380 PF01225 Mur ligase family, catalytic domain XCM_17380 PF02875 Mur ligase family, glutamate ligase domain XCM_17390 PF00365 Phosphofructokinase XCM_1740 PF01425 Amidase XCM_17400 PF03030 Inorganic H+ pyrophosphatase XCM_17410 PF00719 Inorganic pyrophosphatase XCM_17420 PF00593 TonB dependent receptor XCM_17420 PF07715 TonB-dependent Receptor Plug Domain XCM_17425 PF12833 Helix-turn-helix domain XCM_17430 PF18500 CadC C-terminal domain 1 XCM_17430 PF00486 Transcriptional regulatory protein, C terminal XCM_17435 PF01964 Radical SAM ThiC family XCM_17435 PF13667 ThiC-associated domain XCM_17440 PF00593 TonB dependent receptor XCM_17440 PF07715 TonB-dependent Receptor Plug Domain XCM_17445 PF00672 HAMP domain XCM_17445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_17445 PF02203 Tar ligand binding domain homologue XCM_1745 PF01156 Inosine-uridine preferring nucleoside hydrolase XCM_17455 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XCM_17455 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XCM_17460 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCM_17460 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCM_17460 PF00205 Thiamine pyrophosphate enzyme, central domain XCM_17470 PF00291 Pyridoxal-phosphate dependent enzyme XCM_17475 PF00682 HMGL-like XCM_17475 PF08502 LeuA allosteric (dimerisation) domain XCM_17480 PF00180 Isocitrate/isopropylmalate dehydrogenase XCM_17485 PF00694 Aconitase C-terminal domain XCM_17490 PF00330 Aconitase family (aconitate hydratase) XCM_17495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_17500 PF00990 Diguanylate cyclase, GGDEF domain XCM_17515 PF02321 Outer membrane efflux protein XCM_17520 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XCM_17525 PF03279 Bacterial lipid A biosynthesis acyltransferase XCM_1755 PF00860 Permease family XCM_17550 PF03949 Malic enzyme, NAD binding domain XCM_17550 PF01515 Phosphate acetyl/butaryl transferase XCM_17550 PF00390 Malic enzyme, N-terminal domain XCM_17555 PF00375 Sodium:dicarboxylate symporter family XCM_17565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_17565 PF00512 His Kinase A (phospho-acceptor) domain XCM_17565 PF09308 LuxQ, periplasmic XCM_17565 PF00072 Response regulator receiver domain XCM_17570 PF07690 Major Facilitator Superfamily XCM_17580 PF03466 LysR substrate binding domain XCM_17580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_17585 PF00248 Aldo/keto reductase family XCM_1760 PF00111 2Fe-2S iron-sulfur cluster binding domain XCM_17605 PF00072 Response regulator receiver domain XCM_17605 PF00196 Bacterial regulatory proteins, luxR family XCM_17615 PF08521 Two-component sensor kinase N-terminal XCM_17615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_17615 PF00512 His Kinase A (phospho-acceptor) domain XCM_17620 PF00486 Transcriptional regulatory protein, C terminal XCM_17620 PF00072 Response regulator receiver domain XCM_17630 PF03600 Citrate transporter XCM_17640 PF00106 short chain dehydrogenase XCM_17645 PF00356 Bacterial regulatory proteins, lacI family XCM_1765 PF00355 Rieske [2Fe-2S] domain XCM_17660 PF00128 Alpha amylase, catalytic domain XCM_17675 PF03193 RsgA GTPase XCM_17680 PF00155 Aminotransferase class I and II XCM_17695 PF07715 TonB-dependent Receptor Plug Domain XCM_17695 PF00593 TonB dependent receptor XCM_1770 PF03466 LysR substrate binding domain XCM_1770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_17700 PF01522 Polysaccharide deacetylase XCM_17705 PF00462 Glutaredoxin XCM_17720 PF01979 Amidohydrolase family XCM_17725 PF01979 Amidohydrolase family XCM_1775 PF01026 TatD related DNase XCM_17750 PF02645 Uncharacterised protein, DegV family COG1307 XCM_17755 PF01327 Polypeptide deformylase XCM_17760 PF03960 ArsC family XCM_17775 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XCM_17780 PF01270 Glycosyl hydrolases family 8 XCM_17785 PF03170 Bacterial cellulose synthase subunit XCM_17795 PF03170 Bacterial cellulose synthase subunit XCM_17800 PF03552 Cellulose synthase XCM_17800 PF07238 PilZ domain XCM_17800 PF00535 Glycosyl transferase family 2 XCM_17815 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XCM_17815 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XCM_17860 PF07715 TonB-dependent Receptor Plug Domain XCM_17860 PF00593 TonB dependent receptor XCM_17870 PF07702 UTRA domain XCM_17870 PF00392 Bacterial regulatory proteins, gntR family XCM_17885 PF03958 Bacterial type II/III secretion system short domain XCM_17885 PF00263 Bacterial type II and III secretion system protein XCM_17895 PF10741 Type II secretion system (T2SS), protein M subtype b XCM_17900 PF05137 Fimbrial assembly protein (PilN) XCM_17905 PF03934 Type II secretion system (T2SS), protein K XCM_17915 PF07963 Prokaryotic N-terminal methylation motif XCM_17920 PF12019 Type II transport protein GspH XCM_17925 PF08334 Type II secretion system (T2SS), protein G XCM_17930 PF00482 Type II secretion system (T2SS), protein F XCM_17935 PF00437 Type II/IV secretion system protein XCM_17935 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCM_17940 PF00082 Subtilase family XCM_17940 PF04151 Bacterial pre-peptidase C-terminal domain XCM_17945 PF05658 Head domain of trimeric autotransporter adhesin XCM_17945 PF05662 Coiled stalk of trimeric autotransporter adhesin XCM_17945 PF03895 YadA-like membrane anchor domain XCM_17945 PF13018 Extended Signal Peptide of Type V secretion system XCM_1795 PF03466 LysR substrate binding domain XCM_1795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_17950 PF00082 Subtilase family XCM_17950 PF04151 Bacterial pre-peptidase C-terminal domain XCM_17955 PF13018 Extended Signal Peptide of Type V secretion system XCM_17955 PF03895 YadA-like membrane anchor domain XCM_17955 PF05658 Head domain of trimeric autotransporter adhesin XCM_17955 PF05662 Coiled stalk of trimeric autotransporter adhesin XCM_17960 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XCM_17960 PF02769 AIR synthase related protein, C-terminal domain XCM_17960 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XCM_17965 PF13098 Thioredoxin-like domain XCM_17965 PF10411 Disulfide bond isomerase protein N-terminus XCM_17970 PF02899 Phage integrase, N-terminal SAM-like domain XCM_17970 PF00589 Phage integrase family XCM_17985 PF03739 Lipopolysaccharide export system permease LptF/LptG XCM_17995 PF00883 Cytosol aminopeptidase family, catalytic domain XCM_17995 PF02789 Cytosol aminopeptidase family, N-terminal domain XCM_1800 PF07690 Major Facilitator Superfamily XCM_18010 PF08264 Anticodon-binding domain of tRNA XCM_18010 PF00133 tRNA synthetases class I (I, L, M and V) XCM_18010 PF10458 Valyl tRNA synthetase tRNA binding arm XCM_18020 PF01527 Transposase XCM_18025 PF13276 HTH-like domain XCM_18025 PF00665 Integrase core domain XCM_18025 PF13333 Integrase core domain XCM_18035 PF07715 TonB-dependent Receptor Plug Domain XCM_18035 PF00593 TonB dependent receptor XCM_18040 PF01464 Transglycosylase SLT domain XCM_18045 PF00544 Pectate lyase XCM_18065 PF01066 CDP-alcohol phosphatidyltransferase XCM_18075 PF03129 Anticodon binding domain XCM_18075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCM_18075 PF04073 Aminoacyl-tRNA editing domain XCM_18080 PF00816 H-NS histone family XCM_18095 PF02405 Permease MlaE XCM_18100 PF00005 ABC transporter XCM_18105 PF03886 ABC-type transport auxiliary lipoprotein component XCM_18105 PF02470 MlaD protein XCM_18125 PF01144 Coenzyme A transferase XCM_18130 PF01144 Coenzyme A transferase XCM_18135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCM_18135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCM_18135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCM_18135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCM_18140 PF01050 Mannose-6-phosphate isomerase XCM_18140 PF00483 Nucleotidyl transferase XCM_18145 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCM_18145 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCM_18145 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCM_1815 PF02146 Sir2 family XCM_18150 PF04321 RmlD substrate binding domain XCM_18155 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XCM_18160 PF00483 Nucleotidyl transferase XCM_18165 PF16363 GDP-mannose 4,6 dehydratase XCM_18170 PF01012 Electron transfer flavoprotein domain XCM_18175 PF01012 Electron transfer flavoprotein domain XCM_18175 PF00766 Electron transfer flavoprotein FAD-binding domain XCM_18185 PF01040 UbiA prenyltransferase family XCM_18190 PF04030 D-arabinono-1,4-lactone oxidase XCM_18190 PF01565 FAD binding domain XCM_18195 PF00106 short chain dehydrogenase XCM_1820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCM_18200 PF01370 NAD dependent epimerase/dehydratase family XCM_18205 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_18205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCM_18225 PF01370 NAD dependent epimerase/dehydratase family XCM_18230 PF16363 GDP-mannose 4,6 dehydratase XCM_18235 PF13477 Glycosyl transferase 4-like XCM_18235 PF00534 Glycosyl transferases group 1 XCM_18240 PF13847 Methyltransferase domain XCM_18240 PF00069 Protein kinase domain XCM_18245 PF00005 ABC transporter XCM_1825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCM_1825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCM_18255 PF13439 Glycosyltransferase Family 4 XCM_18255 PF00534 Glycosyl transferases group 1 XCM_18260 PF01053 Cys/Met metabolism PLP-dependent enzyme XCM_18265 PF00571 CBS domain XCM_18265 PF00291 Pyridoxal-phosphate dependent enzyme XCM_18285 PF00437 Type II/IV secretion system protein XCM_18295 PF02798 Glutathione S-transferase, N-terminal domain XCM_18295 PF14497 Glutathione S-transferase, C-terminal domain XCM_18305 PF00270 DEAD/DEAH box helicase XCM_18305 PF00271 Helicase conserved C-terminal domain XCM_18320 PF07715 TonB-dependent Receptor Plug Domain XCM_18320 PF00593 TonB dependent receptor XCM_18325 PF01242 6-pyruvoyl tetrahydropterin synthase XCM_18340 PF13185 GAF domain XCM_1835 PF00551 Formyl transferase XCM_18350 PF00756 Putative esterase XCM_18355 PF07715 TonB-dependent Receptor Plug Domain XCM_18355 PF00593 TonB dependent receptor XCM_18360 PF13419 Haloacid dehalogenase-like hydrolase XCM_18365 PF00817 impB/mucB/samB family XCM_18365 PF11799 impB/mucB/samB family C-terminal domain XCM_18370 PF07977 FabA-like domain XCM_18375 PF00109 Beta-ketoacyl synthase, N-terminal domain XCM_18375 PF02801 Beta-ketoacyl synthase, C-terminal domain XCM_18385 PF01432 Peptidase family M3 XCM_1840 PF00072 Response regulator receiver domain XCM_1840 PF00486 Transcriptional regulatory protein, C terminal XCM_18400 PF00394 Multicopper oxidase XCM_18400 PF07731 Multicopper oxidase XCM_18400 PF07732 Multicopper oxidase XCM_18405 PF05275 Copper resistance protein B precursor (CopB) XCM_18410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCM_18435 PF01380 SIS domain XCM_18440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_18445 PF00005 ABC transporter XCM_18445 PF02687 FtsX-like permease family XCM_18445 PF12704 MacB-like periplasmic core domain XCM_1845 PF00672 HAMP domain XCM_1845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_1845 PF00512 His Kinase A (phospho-acceptor) domain XCM_18450 PF12704 MacB-like periplasmic core domain XCM_18450 PF02687 FtsX-like permease family XCM_18455 PF00005 ABC transporter XCM_18455 PF02687 FtsX-like permease family XCM_18455 PF12704 MacB-like periplasmic core domain XCM_18465 PF02954 Bacterial regulatory protein, Fis family XCM_18465 PF00072 Response regulator receiver domain XCM_18465 PF00158 Sigma-54 interaction domain XCM_18470 PF00512 His Kinase A (phospho-acceptor) domain XCM_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_18475 PF00132 Bacterial transferase hexapeptide (six repeats) XCM_18475 PF14602 Hexapeptide repeat of succinyl-transferase XCM_18475 PF12804 MobA-like NTP transferase domain XCM_18490 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XCM_18490 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XCM_18495 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCM_18495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCM_1850 PF00529 HlyD membrane-fusion protein of T1SS XCM_1850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_18500 PF00231 ATP synthase XCM_18505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCM_18505 PF00306 ATP synthase alpha/beta chain, C terminal domain XCM_18505 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCM_18510 PF00213 ATP synthase delta (OSCP) subunit XCM_18515 PF00430 ATP synthase B/B' CF(0) XCM_18520 PF00137 ATP synthase subunit C XCM_18525 PF00119 ATP synthase A chain XCM_18545 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_18545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCM_1855 PF00873 AcrB/AcrD/AcrF family XCM_18555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCM_18555 PF00364 Biotin-requiring enzyme XCM_18555 PF02817 e3 binding domain XCM_1860 PF02321 Outer membrane efflux protein XCM_18600 PF03180 NLPA lipoprotein XCM_18605 PF00528 Binding-protein-dependent transport system inner membrane component XCM_18610 PF00005 ABC transporter XCM_18610 PF09383 NIL domain XCM_18615 PF00892 EamA-like transporter family XCM_18620 PF04461 Protein of unknown function (DUF520) XCM_18630 PF00072 Response regulator receiver domain XCM_18630 PF00989 PAS fold XCM_18630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_18630 PF18415 Histidine kinase receptor ArcB trans-membrane domain XCM_18630 PF01627 Hpt domain XCM_18630 PF00512 His Kinase A (phospho-acceptor) domain XCM_18655 PF13419 Haloacid dehalogenase-like hydrolase XCM_18660 PF01479 S4 domain XCM_18660 PF00849 RNA pseudouridylate synthase XCM_18665 PF05175 Methyltransferase small domain XCM_18665 PF08468 Methyltransferase small domain N-terminal XCM_18675 PF07995 Glucose / Sorbosone dehydrogenase XCM_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_18685 PF00512 His Kinase A (phospho-acceptor) domain XCM_18685 PF00989 PAS fold XCM_18705 PF00842 Alanine racemase, C-terminal domain XCM_18705 PF01168 Alanine racemase, N-terminal domain XCM_18710 PF01266 FAD dependent oxidoreductase XCM_18715 PF01037 Lrp/AsnC ligand binding domain XCM_18725 PF01641 SelR domain XCM_18735 PF01618 MotA/TolQ/ExbB proton channel family XCM_18740 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCM_18740 PF00691 OmpA family XCM_18765 PF01061 ABC-2 type transporter XCM_18770 PF00005 ABC transporter XCM_18775 PF00999 Sodium/hydrogen exchanger family XCM_18780 PF02469 Fasciclin domain XCM_18785 PF03167 Uracil DNA glycosylase superfamily XCM_18795 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCM_18805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_18805 PF03466 LysR substrate binding domain XCM_18810 PF03358 NADPH-dependent FMN reductase XCM_18815 PF00248 Aldo/keto reductase family XCM_18825 PF01431 Peptidase family M13 XCM_18825 PF05649 Peptidase family M13 XCM_18845 PF13520 Amino acid permease XCM_1885 PF02677 Epoxyqueuosine reductase QueH XCM_18855 PF04397 LytTr DNA-binding domain XCM_18855 PF00072 Response regulator receiver domain XCM_18860 PF06580 Histidine kinase XCM_18860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_18860 PF02743 Cache domain XCM_18860 PF00672 HAMP domain XCM_18875 PF05974 Domain of unknown function (DUF892) XCM_18880 PF05067 Manganese containing catalase XCM_18890 PF01527 Transposase XCM_18895 PF00665 Integrase core domain XCM_18895 PF13276 HTH-like domain XCM_18895 PF13333 Integrase core domain XCM_1890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_1890 PF03466 LysR substrate binding domain XCM_18905 PF01339 CheB methylesterase XCM_18905 PF01739 CheR methyltransferase, SAM binding domain XCM_18905 PF03705 CheR methyltransferase, all-alpha domain XCM_18905 PF08448 PAS fold XCM_18920 PF02954 Bacterial regulatory protein, Fis family XCM_18920 PF00072 Response regulator receiver domain XCM_18920 PF00158 Sigma-54 interaction domain XCM_18930 PF01654 Cytochrome bd terminal oxidase subunit I XCM_18935 PF02322 Cytochrome bd terminal oxidase subunit II XCM_1895 PF03358 NADPH-dependent FMN reductase XCM_18955 PF16363 GDP-mannose 4,6 dehydratase XCM_18965 PF03275 UDP-galactopyranose mutase XCM_18975 PF00005 ABC transporter XCM_18975 PF00664 ABC transporter transmembrane region XCM_18990 PF08240 Alcohol dehydrogenase GroES-like domain XCM_18990 PF13823 Alcohol dehydrogenase GroES-associated XCM_18990 PF00107 Zinc-binding dehydrogenase XCM_18995 PF01527 Transposase XCM_19000 PF00665 Integrase core domain XCM_19000 PF13333 Integrase core domain XCM_19000 PF13276 HTH-like domain XCM_19005 PF00107 Zinc-binding dehydrogenase XCM_19005 PF13823 Alcohol dehydrogenase GroES-associated XCM_19005 PF08240 Alcohol dehydrogenase GroES-like domain XCM_1905 PF01717 Cobalamin-independent synthase, Catalytic domain XCM_1905 PF08267 Cobalamin-independent synthase, N-terminal domain XCM_19050 PF00593 TonB dependent receptor XCM_19050 PF07715 TonB-dependent Receptor Plug Domain XCM_19065 PF00005 ABC transporter XCM_19075 PF03466 LysR substrate binding domain XCM_19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_19080 PF01042 Endoribonuclease L-PSP XCM_19095 PF00672 HAMP domain XCM_19095 PF02203 Tar ligand binding domain homologue XCM_19095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_1910 PF03812 2-keto-3-deoxygluconate permease XCM_19110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_19110 PF03466 LysR substrate binding domain XCM_19115 PF02525 Flavodoxin-like fold XCM_19155 PF00557 Metallopeptidase family M24 XCM_19165 PF01527 Transposase XCM_19170 PF13276 HTH-like domain XCM_19170 PF13333 Integrase core domain XCM_19170 PF00665 Integrase core domain XCM_19180 PF01555 DNA methylase XCM_1920 PF05368 NmrA-like family XCM_1925 PF01638 HxlR-like helix-turn-helix XCM_19290 PF00140 Sigma-70 factor, region 1.2 XCM_19290 PF04546 Sigma-70, non-essential region XCM_19290 PF03979 Sigma-70 factor, region 1.1 XCM_19290 PF04539 Sigma-70 region 3 XCM_19290 PF04542 Sigma-70 region 2 XCM_19290 PF04545 Sigma-70, region 4 XCM_19295 PF02580 D-Tyr-tRNA(Tyr) deacylase XCM_19300 PF03279 Bacterial lipid A biosynthesis acyltransferase XCM_19310 PF00925 GTP cyclohydrolase II XCM_19330 PF00535 Glycosyl transferase family 2 XCM_19345 PF01029 NusB family XCM_19345 PF01189 16S rRNA methyltransferase RsmB/F XCM_19350 PF00551 Formyl transferase XCM_19350 PF02911 Formyl transferase, C-terminal domain XCM_19355 PF01327 Polypeptide deformylase XCM_19360 PF01476 LysM domain XCM_19365 PF02481 DNA recombination-mediator protein A XCM_19365 PF17782 DprA winged helix domain XCM_19370 PF04361 Protein of unknown function (DUF494) XCM_19375 PF00114 Pilin (bacterial filament) XCM_19375 PF07963 Prokaryotic N-terminal methylation motif XCM_19385 PF13368 Topoisomerase C-terminal repeat XCM_19385 PF01751 Toprim domain XCM_19385 PF01131 DNA topoisomerase XCM_19390 PF01300 Telomere recombination XCM_19415 PF01343 Peptidase family S49 XCM_19420 PF01554 MatE XCM_19440 PF00270 DEAD/DEAH box helicase XCM_19440 PF00271 Helicase conserved C-terminal domain XCM_19440 PF18074 Primosomal protein N C-terminal domain XCM_19440 PF17764 3′ DNA-binding domain (3′BD) XCM_19440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XCM_19445 PF00043 Glutathione S-transferase, C-terminal domain XCM_19445 PF13417 Glutathione S-transferase, N-terminal domain XCM_19460 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_19465 PF03458 UPF0126 domain XCM_19470 PF04545 Sigma-70, region 4 XCM_19470 PF04542 Sigma-70 region 2 XCM_19475 PF03167 Uracil DNA glycosylase superfamily XCM_19480 PF00072 Response regulator receiver domain XCM_19480 PF01339 CheB methylesterase XCM_19485 PF18075 FtsX extracellular domain XCM_19490 PF00005 ABC transporter XCM_19495 PF00271 Helicase conserved C-terminal domain XCM_19495 PF00270 DEAD/DEAH box helicase XCM_19495 PF12300 ATP-dependent RNA helicase RhlB XCM_1950 PF13333 Integrase core domain XCM_1950 PF13276 HTH-like domain XCM_1950 PF00665 Integrase core domain XCM_19500 PF00085 Thioredoxin XCM_19505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCM_19505 PF07498 Rho termination factor, N-terminal domain XCM_19505 PF07497 Rho termination factor, RNA-binding domain XCM_19510 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XCM_19515 PF03466 LysR substrate binding domain XCM_19515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_19525 PF03971 Monomeric isocitrate dehydrogenase XCM_19535 PF04972 BON domain XCM_19535 PF01476 LysM domain XCM_19540 PF14489 QueF-like protein XCM_19540 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XCM_19545 PF01546 Peptidase family M20/M25/M40 XCM_19545 PF07687 Peptidase dimerisation domain XCM_1955 PF01527 Transposase XCM_19550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_19555 PF00873 AcrB/AcrD/AcrF family XCM_19560 PF00873 AcrB/AcrD/AcrF family XCM_19565 PF07063 Domain of unknown function (DUF1338) XCM_19610 PF01427 D-ala-D-ala dipeptidase XCM_19615 PF01510 N-acetylmuramoyl-L-alanine amidase XCM_19625 PF13378 Enolase C-terminal domain-like XCM_19625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCM_19635 PF13520 Amino acid permease XCM_1965 PF00920 Dehydratase family XCM_19650 PF05360 yiaA/B two helix domain XCM_19655 PF07995 Glucose / Sorbosone dehydrogenase XCM_19660 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCM_19660 PF14310 Fibronectin type III-like domain XCM_19660 PF00933 Glycosyl hydrolase family 3 N terminal domain XCM_19665 PF02152 Dihydroneopterin aldolase XCM_19670 PF00814 Glycoprotease family XCM_19675 PF01165 Ribosomal protein S21 XCM_19680 PF09424 Yqey-like protein XCM_19685 PF03631 Virulence factor BrkB XCM_19690 PF10410 DnaB-helicase binding domain of primase XCM_19690 PF08278 DNA primase DnaG DnaB-binding XCM_19690 PF08275 DNA primase catalytic core, N-terminal domain XCM_19690 PF01807 CHC2 zinc finger XCM_19695 PF13593 SBF-like CPA transporter family (DUF4137) XCM_19705 PF01040 UbiA prenyltransferase family XCM_19730 PF00510 Cytochrome c oxidase subunit III XCM_19735 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XCM_19745 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCM_19750 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCM_19750 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XCM_19760 PF00171 Aldehyde dehydrogenase family XCM_19760 PF01619 Proline dehydrogenase XCM_19760 PF14850 DNA-binding domain of Proline dehydrogenase XCM_19760 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XCM_19765 PF00579 tRNA synthetases class I (W and Y) XCM_19770 PF01551 Peptidase family M23 XCM_19770 PF04225 Opacity-associated protein A LysM-like domain XCM_19775 PF03702 Anhydro-N-acetylmuramic acid kinase XCM_19785 PF07690 Major Facilitator Superfamily XCM_19790 PF03372 Endonuclease/Exonuclease/phosphatase family XCM_19795 PF00156 Phosphoribosyl transferase domain XCM_1980 PF00132 Bacterial transferase hexapeptide (six repeats) XCM_19805 PF13614 AAA domain XCM_19810 PF17762 HTH domain found in ParB protein XCM_19810 PF02195 ParB-like nuclease domain XCM_19820 PF01370 NAD dependent epimerase/dehydratase family XCM_19825 PF00535 Glycosyl transferase family 2 XCM_19840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCM_19840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCM_19840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCM_19840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCM_19845 PF00692 dUTPase XCM_1985 PF07690 Major Facilitator Superfamily XCM_19850 PF04127 DNA / pantothenate metabolism flavoprotein XCM_19850 PF02441 Flavoprotein XCM_19855 PF04002 RadC-like JAB domain XCM_19860 PF03485 Arginyl tRNA synthetase N terminal domain XCM_19860 PF05746 DALR anticodon binding domain XCM_19860 PF00750 tRNA synthetases class I (R) XCM_19875 PF00106 short chain dehydrogenase XCM_19880 PF01757 Acyltransferase family XCM_19885 PF03033 Glycosyltransferase family 28 N-terminal domain XCM_19890 PF00501 AMP-binding enzyme XCM_19890 PF13193 AMP-binding enzyme C-terminal domain XCM_19890 PF00668 Condensation domain XCM_19890 PF00550 Phosphopantetheine attachment site XCM_19890 PF00975 Thioesterase domain XCM_19895 PF00501 AMP-binding enzyme XCM_19895 PF13193 AMP-binding enzyme C-terminal domain XCM_19895 PF00668 Condensation domain XCM_19895 PF00550 Phosphopantetheine attachment site XCM_19895 PF00975 Thioesterase domain XCM_1990 PF11871 Domain of unknown function (DUF3391) XCM_1990 PF01966 HD domain XCM_19910 PF17284 Spermidine synthase tetramerisation domain XCM_19915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCM_19915 PF17944 Arginine decarboxylase C-terminal helical extension XCM_19915 PF17810 Arginine decarboxylase helical bundle domain XCM_19940 PF00963 Cohesin domain XCM_19940 PF00754 F5/8 type C domain XCM_19940 PF00041 Fibronectin type III domain XCM_19940 PF02838 Glycosyl hydrolase family 20, domain 2 XCM_19940 PF07555 beta-N-acetylglucosaminidase XCM_19945 PF00543 Nitrogen regulatory protein P-II XCM_19950 PF04380 Membrane fusogenic activity XCM_19955 PF13335 Magnesium chelatase, subunit ChlI C-terminal XCM_19955 PF01078 Magnesium chelatase, subunit ChlI XCM_19970 PF00563 EAL domain XCM_19970 PF12792 CSS motif domain associated with EAL XCM_19975 PF00487 Fatty acid desaturase XCM_19980 PF00970 Oxidoreductase FAD-binding domain XCM_19980 PF00111 2Fe-2S iron-sulfur cluster binding domain XCM_19980 PF00175 Oxidoreductase NAD-binding domain XCM_19985 PF00440 Bacterial regulatory proteins, tetR family XCM_20000 PF01139 tRNA-splicing ligase RtcB XCM_20040 PF08338 Domain of unknown function (DUF1731) XCM_20040 PF01370 NAD dependent epimerase/dehydratase family XCM_20045 PF00072 Response regulator receiver domain XCM_20045 PF00486 Transcriptional regulatory protein, C terminal XCM_20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_20050 PF00512 His Kinase A (phospho-acceptor) domain XCM_20050 PF08521 Two-component sensor kinase N-terminal XCM_20070 PF00595 PDZ domain XCM_20090 PF01594 AI-2E family transporter XCM_20095 PF13419 Haloacid dehalogenase-like hydrolase XCM_20100 PF02789 Cytosol aminopeptidase family, N-terminal domain XCM_20100 PF00883 Cytosol aminopeptidase family, catalytic domain XCM_20110 PF04542 Sigma-70 region 2 XCM_20110 PF08281 Sigma-70, region 4 XCM_20115 PF00199 Catalase XCM_20130 PF00196 Bacterial regulatory proteins, luxR family XCM_20130 PF00072 Response regulator receiver domain XCM_20135 PF07730 Histidine kinase XCM_20145 PF00005 ABC transporter XCM_2015 PF00171 Aldehyde dehydrogenase family XCM_20165 PF00892 EamA-like transporter family XCM_20170 PF00892 EamA-like transporter family XCM_20185 PF00753 Metallo-beta-lactamase superfamily XCM_20190 PF00579 tRNA synthetases class I (W and Y) XCM_20195 PF05532 CsbD-like XCM_20210 PF00491 Arginase family XCM_20235 PF02223 Thymidylate kinase XCM_20245 PF03309 Type III pantothenate kinase XCM_2025 PF01494 FAD binding domain XCM_20250 PF08279 HTH domain XCM_20250 PF03099 Biotin/lipoate A/B protein ligase family XCM_20250 PF02237 Biotin protein ligase C terminal domain XCM_20260 PF06167 Glucose-regulated metallo-peptidase M90 XCM_20285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_20290 PF00486 Transcriptional regulatory protein, C terminal XCM_20290 PF00072 Response regulator receiver domain XCM_20300 PF01207 Dihydrouridine synthase (Dus) XCM_20315 PF00199 Catalase XCM_20315 PF06628 Catalase-related immune-responsive XCM_20320 PF13307 Helicase C-terminal domain XCM_20320 PF06733 DEAD_2 XCM_20335 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XCM_20335 PF01488 Shikimate / quinate 5-dehydrogenase XCM_20335 PF08501 Shikimate dehydrogenase substrate binding domain XCM_20345 PF00667 FAD binding domain XCM_20345 PF00175 Oxidoreductase NAD-binding domain XCM_20345 PF00258 Flavodoxin XCM_20355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_20355 PF03466 LysR substrate binding domain XCM_20365 PF00490 Delta-aminolevulinic acid dehydratase XCM_20385 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCM_2040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCM_2040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCM_20400 PF01527 Transposase XCM_20420 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCM_20420 PF00326 Prolyl oligopeptidase family XCM_20425 PF00043 Glutathione S-transferase, C-terminal domain XCM_20425 PF02798 Glutathione S-transferase, N-terminal domain XCM_20445 PF04820 Tryptophan halogenase XCM_2045 PF00230 Major intrinsic protein XCM_20460 PF00005 ABC transporter XCM_20470 PF01381 Helix-turn-helix XCM_20480 PF01229 Glycosyl hydrolases family 39 XCM_20485 PF02583 Metal-sensitive transcriptional repressor XCM_20490 PF16916 Dimerisation domain of Zinc Transporter XCM_20490 PF01545 Cation efflux family XCM_2050 PF01266 FAD dependent oxidoreductase XCM_2050 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XCM_20500 PF00593 TonB dependent receptor XCM_20500 PF07715 TonB-dependent Receptor Plug Domain XCM_20510 PF12833 Helix-turn-helix domain XCM_20510 PF01965 DJ-1/PfpI family XCM_20515 PF00111 2Fe-2S iron-sulfur cluster binding domain XCM_20515 PF00175 Oxidoreductase NAD-binding domain XCM_20515 PF00970 Oxidoreductase FAD-binding domain XCM_20520 PF00005 ABC transporter XCM_20525 PF01061 ABC-2 type transporter XCM_20535 PF02558 Ketopantoate reductase PanE/ApbA XCM_20535 PF08546 Ketopantoate reductase PanE/ApbA C terminal XCM_2055 PF00455 DeoR C terminal sensor domain XCM_2055 PF08220 DeoR-like helix-turn-helix domain XCM_20565 PF00268 Ribonucleotide reductase, small chain XCM_20570 PF02867 Ribonucleotide reductase, barrel domain XCM_20570 PF03477 ATP cone domain XCM_20570 PF00317 Ribonucleotide reductase, all-alpha domain XCM_20580 PF13607 Succinyl-CoA ligase like flavodoxin domain XCM_20580 PF00583 Acetyltransferase (GNAT) family XCM_20580 PF13380 CoA binding domain XCM_20585 PF01769 Divalent cation transporter XCM_20585 PF00571 CBS domain XCM_20585 PF03448 MgtE intracellular N domain XCM_20590 PF00194 Eukaryotic-type carbonic anhydrase XCM_20595 PF00999 Sodium/hydrogen exchanger family XCM_20595 PF02254 TrkA-N domain XCM_2060 PF00970 Oxidoreductase FAD-binding domain XCM_2060 PF00111 2Fe-2S iron-sulfur cluster binding domain XCM_20600 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCM_20600 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCM_20605 PF00723 Glycosyl hydrolases family 15 XCM_20620 PF05166 YcgL domain XCM_20625 PF02801 Beta-ketoacyl synthase, C-terminal domain XCM_20625 PF00109 Beta-ketoacyl synthase, N-terminal domain XCM_20630 PF00535 Glycosyl transferase family 2 XCM_2065 PF00355 Rieske [2Fe-2S] domain XCM_20660 PF00550 Phosphopantetheine attachment site XCM_20665 PF04820 Tryptophan halogenase XCM_20685 PF07676 WD40-like Beta Propeller Repeat XCM_20685 PF00326 Prolyl oligopeptidase family XCM_2070 PF01144 Coenzyme A transferase XCM_20700 PF01218 Coproporphyrinogen III oxidase XCM_20710 PF01367 5'-3' exonuclease, C-terminal SAM fold XCM_20710 PF01612 3'-5' exonuclease XCM_20710 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCM_20710 PF00476 DNA polymerase family A XCM_20720 PF06812 ImpA, N-terminal, type VI secretion system XCM_20740 PF00069 Protein kinase domain XCM_2075 PF01144 Coenzyme A transferase XCM_20755 PF14331 ImcF-related N-terminal domain XCM_20755 PF06761 Intracellular multiplication and human macrophage-killing XCM_20755 PF06744 Type VI secretion protein IcmF C-terminal XCM_20765 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE XCM_20780 PF04717 Type VI secretion system, phage-baseplate injector XCM_2080 PF02803 Thiolase, C-terminal domain XCM_2080 PF00108 Thiolase, N-terminal domain XCM_20800 PF00069 Protein kinase domain XCM_20800 PF03793 PASTA domain XCM_20810 PF04542 Sigma-70 region 2 XCM_20810 PF08281 Sigma-70, region 4 XCM_20825 PF00328 Histidine phosphatase superfamily (branch 2) XCM_2085 PF00775 Dioxygenase XCM_2085 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XCM_20870 PF10431 C-terminal, D2-small domain, of ClpB protein XCM_20870 PF17871 AAA lid domain XCM_20870 PF07724 AAA domain (Cdc48 subfamily) XCM_20870 PF00004 ATPase family associated with various cellular activities (AAA) XCM_20880 PF05947 Type VI secretion system, TssF XCM_20885 PF04965 Gene 25-like lysozyme XCM_20890 PF07024 ImpE protein XCM_20895 PF05638 Type VI secretion system effector, Hcp XCM_20900 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath XCM_20905 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 XCM_20920 PF14602 Hexapeptide repeat of succinyl-transferase XCM_20920 PF12464 Maltose acetyltransferase XCM_20925 PF00580 UvrD/REP helicase N-terminal domain XCM_20925 PF13361 UvrD-like helicase C-terminal domain XCM_20935 PF13091 PLD-like domain XCM_20935 PF13396 Phospholipase_D-nuclease N-terminal XCM_20940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_20940 PF03466 LysR substrate binding domain XCM_20945 PF03737 Aldolase/RraA XCM_2095 PF10397 Adenylosuccinate lyase C-terminus XCM_2095 PF00206 Lyase XCM_20950 PF04303 PrpF protein XCM_20955 PF04909 Amidohydrolase XCM_20965 PF04909 Amidohydrolase XCM_20970 PF00471 Ribosomal protein L33 XCM_20975 PF00830 Ribosomal L28 family XCM_20980 PF00873 AcrB/AcrD/AcrF family XCM_20990 PF13533 Biotin-lipoyl like XCM_2100 PF12146 Serine aminopeptidase, S33 XCM_21010 PF02527 rRNA small subunit methyltransferase G XCM_21015 PF09423 PhoD-like phosphatase XCM_21015 PF16655 PhoD-like phosphatase, N-terminal domain XCM_21025 PF09423 PhoD-like phosphatase XCM_21025 PF16655 PhoD-like phosphatase, N-terminal domain XCM_21030 PF01648 4'-phosphopantetheinyl transferase superfamily XCM_21035 PF04226 Transglycosylase associated protein XCM_21045 PF03372 Endonuclease/Exonuclease/phosphatase family XCM_2105 PF02627 Carboxymuconolactone decarboxylase family XCM_21055 PF00480 ROK family XCM_21065 PF00639 PPIC-type PPIASE domain XCM_21065 PF09312 SurA N-terminal domain XCM_21075 PF00474 Sodium:solute symporter family XCM_21080 PF04341 Protein of unknown function, DUF485 XCM_21090 PF16177 Acetyl-coenzyme A synthetase N-terminus XCM_21090 PF00501 AMP-binding enzyme XCM_21090 PF13193 AMP-binding enzyme C-terminal domain XCM_21095 PF00072 Response regulator receiver domain XCM_21095 PF00196 Bacterial regulatory proteins, luxR family XCM_21120 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCM_21120 PF04616 Glycosyl hydrolases family 43 XCM_21125 PF00248 Aldo/keto reductase family XCM_21140 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCM_21145 PF13378 Enolase C-terminal domain-like XCM_21145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCM_2115 PF09339 IclR helix-turn-helix domain XCM_2115 PF01614 Bacterial transcriptional regulator XCM_21155 PF05336 L-rhamnose mutarotase XCM_21160 PF07690 Major Facilitator Superfamily XCM_21165 PF09339 IclR helix-turn-helix domain XCM_21165 PF01614 Bacterial transcriptional regulator XCM_21170 PF02659 Putative manganese efflux pump XCM_21175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_21175 PF00512 His Kinase A (phospho-acceptor) domain XCM_21185 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XCM_21185 PF06165 Glycosyltransferase family 36 XCM_21210 PF13360 PQQ-like domain XCM_21210 PF01011 PQQ enzyme repeat XCM_21210 PF13570 PQQ-like domain XCM_21235 PF04357 TamB, inner membrane protein subunit of TAM complex XCM_21240 PF01103 Surface antigen XCM_21240 PF17243 POTRA domain TamA domain 1 XCM_21245 PF07715 TonB-dependent Receptor Plug Domain XCM_21245 PF00593 TonB dependent receptor XCM_2125 PF07859 alpha/beta hydrolase fold XCM_21250 PF13181 Tetratricopeptide repeat XCM_21255 PF02092 Glycyl-tRNA synthetase beta subunit XCM_21255 PF05746 DALR anticodon binding domain XCM_21260 PF02091 Glycyl-tRNA synthetase alpha subunit XCM_21265 PF00437 Type II/IV secretion system protein XCM_21265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCM_21275 PF00958 GMP synthase C terminal domain XCM_21275 PF00117 Glutamine amidotransferase class-I XCM_21285 PF00902 Sec-independent protein translocase protein (TatC) XCM_21290 PF02416 mttA/Hcf106 family XCM_21295 PF02416 mttA/Hcf106 family XCM_2130 PF10677 Protein of unknown function (DUF2490) XCM_21305 PF00762 Ferrochelatase XCM_21310 PF12697 Alpha/beta hydrolase family XCM_21320 PF04381 Putative exonuclease, RdgC XCM_21325 PF01171 PP-loop family XCM_21335 PF00356 Bacterial regulatory proteins, lacI family XCM_21340 PF07477 Glycosyl hydrolase family 67 C-terminus XCM_21340 PF07488 Glycosyl hydrolase family 67 middle domain XCM_21340 PF03648 Glycosyl hydrolase family 67 N-terminus XCM_2135 PF13932 GidA associated domain XCM_2135 PF01134 Glucose inhibited division protein A XCM_21350 PF13378 Enolase C-terminal domain-like XCM_21350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCM_21355 PF04616 Glycosyl hydrolases family 43 XCM_21355 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCM_21360 PF14310 Fibronectin type III-like domain XCM_21360 PF00933 Glycosyl hydrolase family 3 N terminal domain XCM_21360 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCM_21360 PF07691 PA14 domain XCM_21365 PF01232 Mannitol dehydrogenase Rossmann domain XCM_21365 PF08125 Mannitol dehydrogenase C-terminal domain XCM_21395 PF00171 Aldehyde dehydrogenase family XCM_21415 PF00202 Aminotransferase class-III XCM_21425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCM_21425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCM_21445 PF08450 SMP-30/Gluconolactonase/LRE-like region XCM_2145 PF00291 Pyridoxal-phosphate dependent enzyme XCM_21450 PF00331 Glycosyl hydrolase family 10 XCM_21455 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCM_21455 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCM_21455 PF00703 Glycosyl hydrolases family 2 XCM_21455 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCM_21455 PF16355 Domain of unknown function (DUF4982) XCM_21460 PF02614 Glucuronate isomerase XCM_21465 PF00553 Cellulose binding domain XCM_21465 PF03422 Carbohydrate binding module (family 6) XCM_21465 PF00331 Glycosyl hydrolase family 10 XCM_21475 PF00331 Glycosyl hydrolase family 10 XCM_21475 PF00553 Cellulose binding domain XCM_21475 PF03422 Carbohydrate binding module (family 6) XCM_21495 PF04616 Glycosyl hydrolases family 43 XCM_21520 PF00107 Zinc-binding dehydrogenase XCM_21520 PF00698 Acyl transferase domain XCM_21520 PF08240 Alcohol dehydrogenase GroES-like domain XCM_21520 PF16197 Ketoacyl-synthetase C-terminal extension XCM_21520 PF00109 Beta-ketoacyl synthase, N-terminal domain XCM_21520 PF14765 Polyketide synthase dehydratase XCM_21520 PF00550 Phosphopantetheine attachment site XCM_21520 PF08659 KR domain XCM_21520 PF02801 Beta-ketoacyl synthase, C-terminal domain XCM_21525 PF01553 Acyltransferase XCM_21535 PF00356 Bacterial regulatory proteins, lacI family XCM_21550 PF04820 Tryptophan halogenase XCM_21560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XCM_21565 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XCM_21570 PF04337 Protein of unknown function, DUF480 XCM_21580 PF13302 Acetyltransferase (GNAT) domain XCM_21585 PF00580 UvrD/REP helicase N-terminal domain XCM_21585 PF13361 UvrD-like helicase C-terminal domain XCM_21590 PF00265 Thymidine kinase XCM_21595 PF01590 GAF domain XCM_21595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_21595 PF00512 His Kinase A (phospho-acceptor) domain XCM_21595 PF08446 PAS fold XCM_21595 PF00360 Phytochrome region XCM_21600 PF04349 Periplasmic glucan biosynthesis protein, MdoG XCM_21610 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCM_21610 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCM_21610 PF06827 Zinc finger found in FPG and IleRS XCM_21620 PF03594 Benzoate membrane transport protein XCM_21625 PF01590 GAF domain XCM_21625 PF08446 PAS fold XCM_21625 PF13426 PAS domain XCM_21625 PF00360 Phytochrome region XCM_21630 PF01126 Heme oxygenase XCM_21635 PF07690 Major Facilitator Superfamily XCM_21640 PF01263 Aldose 1-epimerase XCM_2165 PF13649 Methyltransferase domain XCM_21650 PF02810 SEC-C motif XCM_21660 PF01925 Sulfite exporter TauE/SafE XCM_21685 PF01227 GTP cyclohydrolase I XCM_21695 PF07869 Protein of unknown function (DUF1656) XCM_21700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_21700 PF00529 HlyD membrane-fusion protein of T1SS XCM_21705 PF02321 Outer membrane efflux protein XCM_21710 PF04632 Fusaric acid resistance protein family XCM_21715 PF00083 Sugar (and other) transporter XCM_21720 PF13091 PLD-like domain XCM_21720 PF13396 Phospholipase_D-nuclease N-terminal XCM_2175 PF12697 Alpha/beta hydrolase family XCM_21770 PF00849 RNA pseudouridylate synthase XCM_21815 PF02785 Biotin carboxylase C-terminal domain XCM_21815 PF00289 Biotin carboxylase, N-terminal domain XCM_21815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCM_21820 PF01425 Amidase XCM_2185 PF00155 Aminotransferase class I and II XCM_21850 PF13538 UvrD-like helicase C-terminal domain XCM_21855 PF12705 PD-(D/E)XK nuclease superfamily XCM_21855 PF00580 UvrD/REP helicase N-terminal domain XCM_21855 PF13361 UvrD-like helicase C-terminal domain XCM_21860 PF17946 RecC C-terminal domain XCM_21875 PF00005 ABC transporter XCM_21880 PF02405 Permease MlaE XCM_21885 PF02470 MlaD protein XCM_21890 PF05494 MlaC protein XCM_2190 PF04055 Radical SAM superfamily XCM_2190 PF06968 Biotin and Thiamin Synthesis associated domain XCM_21900 PF04333 MlaA lipoprotein XCM_21910 PF00255 Glutathione peroxidase XCM_21915 PF02646 RmuC family XCM_21920 PF00107 Zinc-binding dehydrogenase XCM_21920 PF08240 Alcohol dehydrogenase GroES-like domain XCM_21925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_21925 PF03466 LysR substrate binding domain XCM_21935 PF13417 Glutathione S-transferase, N-terminal domain XCM_21935 PF00043 Glutathione S-transferase, C-terminal domain XCM_21945 PF13520 Amino acid permease XCM_21950 PF07971 Glycosyl hydrolase family 92 XCM_21950 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCM_21955 PF10947 Protein of unknown function (DUF2628) XCM_21960 PF00990 Diguanylate cyclase, GGDEF domain XCM_21965 PF13556 PucR C-terminal helix-turn-helix domain XCM_21965 PF17853 GGDEF-like domain XCM_21965 PF05651 Putative sugar diacid recognition XCM_21970 PF02595 Glycerate kinase family XCM_21975 PF07690 Major Facilitator Superfamily XCM_21990 PF17785 PUA-like domain XCM_21990 PF10672 S-adenosylmethionine-dependent methyltransferase XCM_21995 PF03741 Integral membrane protein TerC family XCM_2200 PF01040 UbiA prenyltransferase family XCM_22000 PF01694 Rhomboid family XCM_22005 PF03009 Glycerophosphoryl diester phosphodiesterase family XCM_22015 PF01569 PAP2 superfamily XCM_22020 PF12631 MnmE helical domain XCM_22020 PF01926 50S ribosome-binding GTPase XCM_22020 PF10396 GTP-binding protein TrmE N-terminus XCM_22025 PF01522 Polysaccharide deacetylase XCM_22030 PF14849 YidC periplasmic domain XCM_22030 PF02096 60Kd inner membrane protein XCM_22035 PF00825 Ribonuclease P XCM_22040 PF00468 Ribosomal protein L34 XCM_22045 PF13333 Integrase core domain XCM_22045 PF13276 HTH-like domain XCM_22045 PF00665 Integrase core domain XCM_22100 PF03524 Conjugal transfer protein XCM_22105 PF03743 Bacterial conjugation TrbI-like protein XCM_22110 PF00437 Type II/IV secretion system protein XCM_22115 PF01464 Transglycosylase SLT domain XCM_22125 PF13614 AAA domain XCM_22135 PF02796 Helix-turn-helix domain of resolvase XCM_22135 PF00239 Resolvase, N terminal domain XCM_22165 PF08751 TrwC relaxase XCM_22165 PF18272 single-stranded DNA binding TraI N-terminal subdomain XCM_22165 PF07057 DNA helicase TraI XCM_22165 PF18340 DNA relaxase TraI 2B/2B-like domain XCM_22215 PF13614 AAA domain XCM_22215 PF00376 MerR family regulatory protein XCM_22220 PF17762 HTH domain found in ParB protein XCM_22220 PF02195 ParB-like nuclease domain XCM_22240 PF01527 Transposase XCM_2225 PF05819 NolX protein XCM_22270 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system XCM_22280 PF00239 Resolvase, N terminal domain XCM_22280 PF02796 Helix-turn-helix domain of resolvase XCM_22285 PF03377 TAL effector repeat XCM_22300 PF00665 Integrase core domain XCM_22300 PF13276 HTH-like domain XCM_22300 PF13333 Integrase core domain XCM_22305 PF01527 Transposase XCM_22320 PF00437 Type II/IV secretion system protein XCM_22330 PF01527 Transposase XCM_22340 PF03377 TAL effector repeat XCM_22350 PF01527 Transposase XCM_22355 PF13276 HTH-like domain XCM_22355 PF00665 Integrase core domain XCM_22355 PF13333 Integrase core domain XCM_22370 PF03377 TAL effector repeat XCM_22380 PF00239 Resolvase, N terminal domain XCM_22380 PF02796 Helix-turn-helix domain of resolvase XCM_22385 PF02796 Helix-turn-helix domain of resolvase XCM_22385 PF00239 Resolvase, N terminal domain XCM_22400 PF13700 Domain of unknown function (DUF4158) XCM_22400 PF01526 Tn3 transposase DDE domain XCM_22405 PF03695 Uncharacterised protein family (UPF0149) XCM_22405 PF02810 SEC-C motif XCM_22415 PF01527 Transposase XCM_22430 PF01527 Transposase XCM_22445 PF02796 Helix-turn-helix domain of resolvase XCM_22445 PF00239 Resolvase, N terminal domain XCM_22475 PF01527 Transposase XCM_22480 PF00239 Resolvase, N terminal domain XCM_22485 PF13614 AAA domain XCM_22550 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCM_22560 PF03524 Conjugal transfer protein XCM_22565 PF03743 Bacterial conjugation TrbI-like protein XCM_22570 PF00437 Type II/IV secretion system protein XCM_22575 PF01464 Transglycosylase SLT domain XCM_22590 PF01527 Transposase XCM_22610 PF18340 DNA relaxase TraI 2B/2B-like domain XCM_22610 PF18272 single-stranded DNA binding TraI N-terminal subdomain XCM_22610 PF07057 DNA helicase TraI XCM_22610 PF08751 TrwC relaxase XCM_2265 PF01313 Bacterial export proteins, family 3 XCM_2270 PF00813 FliP family XCM_2285 PF00771 FHIPEP family XCM_2290 PF01312 FlhB HrpN YscU SpaS Family XCM_2305 PF01514 Secretory protein of YscJ/FliF family XCM_2320 PF18269 T3SS EscN ATPase C-terminal domain XCM_2320 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCM_2320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCM_2330 PF01311 Bacterial export proteins, family 1 XCM_2335 PF00263 Bacterial type II and III secretion system protein XCM_2335 PF03958 Bacterial type II/III secretion system short domain XCM_2350 PF01464 Transglycosylase SLT domain XCM_2365 PF12794 Mechanosensitive ion channel inner membrane domain 1 XCM_2365 PF12795 Mechanosensitive ion channel porin domain XCM_2365 PF00924 Mechanosensitive ion channel XCM_2370 PF00884 Sulfatase XCM_2375 PF03109 ABC1 family XCM_2380 PF05661 Protein of unknown function (DUF808) XCM_2385 PF00990 Diguanylate cyclase, GGDEF domain XCM_2390 PF08323 Starch synthase catalytic domain XCM_2390 PF00534 Glycosyl transferases group 1 XCM_2395 PF00128 Alpha amylase, catalytic domain XCM_2395 PF02806 Alpha amylase, C-terminal all-beta domain XCM_2395 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCM_2400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCM_2400 PF11941 Domain of unknown function (DUF3459) XCM_2400 PF00128 Alpha amylase, catalytic domain XCM_2405 PF02446 4-alpha-glucanotransferase XCM_2410 PF00128 Alpha amylase, catalytic domain XCM_2420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCM_2420 PF00128 Alpha amylase, catalytic domain XCM_2425 PF13460 NAD(P)H-binding XCM_2440 PF06903 VirK protein XCM_2445 PF02321 Outer membrane efflux protein XCM_2460 PF00873 AcrB/AcrD/AcrF family XCM_2475 PF00270 DEAD/DEAH box helicase XCM_2475 PF00271 Helicase conserved C-terminal domain XCM_2485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCM_2485 PF00364 Biotin-requiring enzyme XCM_2485 PF02817 e3 binding domain XCM_2495 PF02779 Transketolase, pyrimidine binding domain XCM_2495 PF02780 Transketolase, C-terminal domain XCM_2500 PF00676 Dehydrogenase E1 component XCM_2510 PF03301 Tryptophan 2,3-dioxygenase XCM_2515 PF00854 POT family XCM_2525 PF01047 MarR family XCM_2530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCM_2535 PF04209 homogentisate 1,2-dioxygenase XCM_2550 PF03334 Na+/H+ antiporter subunit XCM_2555 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XCM_2565 PF00361 Proton-conducting membrane transporter XCM_2570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCM_2575 PF13244 Domain of unknown function (DUF4040) XCM_2575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCM_2575 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XCM_2575 PF00361 Proton-conducting membrane transporter XCM_2590 PF07504 Fungalysin/Thermolysin Propeptide Motif XCM_2590 PF03413 Peptidase propeptide and YPEB domain XCM_2590 PF01447 Thermolysin metallopeptidase, catalytic domain XCM_2590 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCM_2600 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCM_2600 PF01447 Thermolysin metallopeptidase, catalytic domain XCM_2600 PF01483 Proprotein convertase P-domain XCM_2600 PF07504 Fungalysin/Thermolysin Propeptide Motif XCM_2605 PF00182 Chitinase class I XCM_2625 PF01259 SAICAR synthetase XCM_2630 PF00226 DnaJ domain XCM_2630 PF05099 Tellurite resistance protein TerB XCM_2640 PF00834 Ribulose-phosphate 3 epimerase family XCM_2645 PF00583 Acetyltransferase (GNAT) family XCM_2650 PF00781 Diacylglycerol kinase catalytic domain XCM_2655 PF00425 chorismate binding enzyme XCM_2655 PF04715 Anthranilate synthase component I, N terminal region XCM_2665 PF00117 Glutamine amidotransferase class-I XCM_2675 PF00591 Glycosyl transferase family, a/b domain XCM_2675 PF02885 Glycosyl transferase family, helical bundle domain XCM_2680 PF00218 Indole-3-glycerol phosphate synthase XCM_2690 PF00027 Cyclic nucleotide-binding domain XCM_2690 PF00325 Bacterial regulatory proteins, crp family XCM_2695 PF02675 S-adenosylmethionine decarboxylase XCM_2700 PF00893 Small Multidrug Resistance protein XCM_2705 PF03232 Ubiquinone biosynthesis protein COQ7 XCM_2710 PF00572 Ribosomal protein L13 XCM_2715 PF00380 Ribosomal protein S9/S16 XCM_2725 PF00293 NUDIX domain XCM_2730 PF00210 Ferritin-like domain XCM_2735 PF00672 HAMP domain XCM_2735 PF00512 His Kinase A (phospho-acceptor) domain XCM_2735 PF01627 Hpt domain XCM_2735 PF00072 Response regulator receiver domain XCM_2735 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCM_2735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_2740 PF00072 Response regulator receiver domain XCM_2740 PF00486 Transcriptional regulatory protein, C terminal XCM_2760 PF01521 Iron-sulphur cluster biosynthesis XCM_2775 PF09297 NADH pyrophosphatase zinc ribbon domain XCM_2775 PF00293 NUDIX domain XCM_2775 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XCM_2780 PF17113 Regulatory signalling modulator protein AmpE XCM_2780 PF03186 CobD/Cbib protein XCM_2795 PF07690 Major Facilitator Superfamily XCM_2800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_2800 PF03466 LysR substrate binding domain XCM_2805 PF07690 Major Facilitator Superfamily XCM_2810 PF12805 FUSC-like inner membrane protein yccS XCM_2815 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XCM_2815 PF02843 Phosphoribosylglycinamide synthetase, C domain XCM_2815 PF02844 Phosphoribosylglycinamide synthetase, N domain XCM_2825 PF01808 AICARFT/IMPCHase bienzyme XCM_2825 PF02142 MGS-like domain XCM_2830 PF01066 CDP-alcohol phosphatidyltransferase XCM_2835 PF12146 Serine aminopeptidase, S33 XCM_2835 PF12147 Putative methyltransferase XCM_2840 PF00782 Dual specificity phosphatase, catalytic domain XCM_2870 PF02954 Bacterial regulatory protein, Fis family XCM_2885 PF01381 Helix-turn-helix XCM_2910 PF02785 Biotin carboxylase C-terminal domain XCM_2910 PF00289 Biotin carboxylase, N-terminal domain XCM_2910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCM_2920 PF00364 Biotin-requiring enzyme XCM_2925 PF01220 Dehydroquinase class II XCM_2930 PF02683 Cytochrome C biogenesis protein transmembrane region XCM_2930 PF11412 Disulphide bond corrector protein DsbC XCM_2935 PF03091 CutA1 divalent ion tolerance protein XCM_2945 PF01852 START domain XCM_2955 PF00106 short chain dehydrogenase XCM_2960 PF04231 Endonuclease I XCM_2965 PF00166 Chaperonin 10 Kd subunit XCM_2970 PF00118 TCP-1/cpn60 chaperonin family XCM_2980 PF00593 TonB dependent receptor XCM_2980 PF07715 TonB-dependent Receptor Plug Domain XCM_2985 PF00793 DAHP synthetase I family XCM_3000 PF08450 SMP-30/Gluconolactonase/LRE-like region XCM_3010 PF08335 GlnD PII-uridylyltransferase XCM_3010 PF03710 Glutamate-ammonia ligase adenylyltransferase XCM_3015 PF02592 Putative vitamin uptake transporter XCM_3030 PF00881 Nitroreductase family XCM_3035 PF04264 YceI-like domain XCM_3055 PF16957 Malonate decarboxylase, alpha subunit, transporter XCM_3060 PF06857 Malonate decarboxylase delta subunit (MdcD) XCM_3065 PF01039 Carboxyl transferase domain XCM_3075 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XCM_3080 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XCM_3085 PF00698 Acyl transferase domain XCM_3095 PF00392 Bacterial regulatory proteins, gntR family XCM_3095 PF07729 FCD domain XCM_3100 PF13419 Haloacid dehalogenase-like hydrolase XCM_3135 PF13333 Integrase core domain XCM_3135 PF00665 Integrase core domain XCM_3135 PF13276 HTH-like domain XCM_3140 PF01527 Transposase XCM_3145 PF07745 Glycosyl hydrolase family 53 XCM_3150 PF17831 Pyruvate dehydrogenase E1 component middle domain XCM_3150 PF00456 Transketolase, thiamine diphosphate binding domain XCM_3175 PF00106 short chain dehydrogenase XCM_3190 PF00106 short chain dehydrogenase XCM_3200 PF13409 Glutathione S-transferase, N-terminal domain XCM_3210 PF01527 Transposase XCM_3215 PF00665 Integrase core domain XCM_3215 PF13333 Integrase core domain XCM_3215 PF13276 HTH-like domain XCM_3230 PF12823 Domain of unknown function (DUF3817) XCM_3230 PF03176 MMPL family XCM_3235 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCM_3235 PF00326 Prolyl oligopeptidase family XCM_3240 PF07759 Protein of unknown function (DUF1615) XCM_3250 PF00990 Diguanylate cyclase, GGDEF domain XCM_3270 PF00892 EamA-like transporter family XCM_3275 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCM_3285 PF00324 Amino acid permease XCM_3295 PF01544 CorA-like Mg2+ transporter protein XCM_3305 PF01204 Trehalase XCM_3325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCM_3325 PF06827 Zinc finger found in FPG and IleRS XCM_3325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCM_3345 PF08448 PAS fold XCM_3345 PF00990 Diguanylate cyclase, GGDEF domain XCM_3345 PF08447 PAS fold XCM_3345 PF00563 EAL domain XCM_3350 PF02203 Tar ligand binding domain homologue XCM_3350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_3350 PF00672 HAMP domain XCM_3355 PF00150 Cellulase (glycosyl hydrolase family 5) XCM_3355 PF00553 Cellulose binding domain XCM_3360 PF01740 STAS domain XCM_3360 PF00916 Sulfate permease family XCM_3365 PF00990 Diguanylate cyclase, GGDEF domain XCM_3375 PF13632 Glycosyl transferase family group 2 XCM_3385 PF06580 Histidine kinase XCM_3385 PF07694 5TMR of 5TMR-LYT XCM_3390 PF04397 LytTr DNA-binding domain XCM_3390 PF00072 Response regulator receiver domain XCM_3395 PF03900 Porphobilinogen deaminase, C-terminal domain XCM_3395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XCM_3425 PF00326 Prolyl oligopeptidase family XCM_3425 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCM_3435 PF00155 Aminotransferase class I and II XCM_3440 PF00326 Prolyl oligopeptidase family XCM_3440 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCM_3445 PF00326 Prolyl oligopeptidase family XCM_3445 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCM_3450 PF04304 Protein of unknown function (DUF454) XCM_3460 PF01678 Diaminopimelate epimerase XCM_3470 PF02899 Phage integrase, N-terminal SAM-like domain XCM_3470 PF00589 Phage integrase family XCM_3475 PF00227 Proteasome subunit XCM_3480 PF07724 AAA domain (Cdc48 subfamily) XCM_3480 PF10431 C-terminal, D2-small domain, of ClpB protein XCM_3480 PF00004 ATPase family associated with various cellular activities (AAA) XCM_3490 PF13673 Acetyltransferase (GNAT) domain XCM_3495 PF13533 Biotin-lipoyl like XCM_3505 PF01209 ubiE/COQ5 methyltransferase family XCM_3510 PF03707 Bacterial signalling protein N terminal repeat XCM_3510 PF00990 Diguanylate cyclase, GGDEF domain XCM_3510 PF00563 EAL domain XCM_3515 PF11838 ERAP1-like C-terminal domain XCM_3515 PF01433 Peptidase family M1 domain XCM_3530 PF13360 PQQ-like domain XCM_3535 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCM_3540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCM_3540 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP XCM_3540 PF00034 Cytochrome c XCM_3550 PF00107 Zinc-binding dehydrogenase XCM_3550 PF08240 Alcohol dehydrogenase GroES-like domain XCM_3560 PF00158 Sigma-54 interaction domain XCM_3560 PF02954 Bacterial regulatory protein, Fis family XCM_3560 PF01590 GAF domain XCM_3565 PF00294 pfkB family carbohydrate kinase XCM_3575 PF04085 rod shape-determining protein MreC XCM_3585 PF00905 Penicillin binding protein transpeptidase domain XCM_3585 PF03717 Penicillin-binding Protein dimerisation domain XCM_3590 PF01098 Cell cycle protein XCM_3595 PF00295 Glycosyl hydrolases family 28 XCM_3600 PF13406 Transglycosylase SLT domain XCM_3605 PF03330 Lytic transglycolase XCM_3605 PF05036 Sporulation related domain XCM_3610 PF07943 Penicillin-binding protein 5, C-terminal domain XCM_3610 PF00768 D-alanyl-D-alanine carboxypeptidase XCM_3620 PF04359 Protein of unknown function (DUF493) XCM_3625 PF03099 Biotin/lipoate A/B protein ligase family XCM_3630 PF04055 Radical SAM superfamily XCM_3630 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XCM_3635 PF11818 C-terminal domain of tail specific protease (DUF3340) XCM_3635 PF00595 PDZ domain XCM_3635 PF03572 Peptidase family S41 XCM_3635 PF17804 Tail specific protease N-terminal domain XCM_3645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_3645 PF03466 LysR substrate binding domain XCM_3660 PF01467 Cytidylyltransferase-like XCM_3660 PF00293 NUDIX domain XCM_3690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCM_3690 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XCM_3695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCM_3695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCM_3700 PF04972 BON domain XCM_3705 PF01590 GAF domain XCM_3705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_3705 PF00512 His Kinase A (phospho-acceptor) domain XCM_3705 PF08446 PAS fold XCM_3705 PF00360 Phytochrome region XCM_3710 PF00072 Response regulator receiver domain XCM_3715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_3715 PF00512 His Kinase A (phospho-acceptor) domain XCM_3720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCM_3765 PF00263 Bacterial type II and III secretion system protein XCM_3765 PF03958 Bacterial type II/III secretion system short domain XCM_3770 PF00437 Type II/IV secretion system protein XCM_3775 PF00482 Type II secretion system (T2SS), protein F XCM_3780 PF07963 Prokaryotic N-terminal methylation motif XCM_3780 PF08334 Type II secretion system (T2SS), protein G XCM_3785 PF07963 Prokaryotic N-terminal methylation motif XCM_3785 PF12019 Type II transport protein GspH XCM_3795 PF11612 Type II secretion system (T2SS), protein J XCM_3795 PF07963 Prokaryotic N-terminal methylation motif XCM_3800 PF03934 Type II secretion system (T2SS), protein K XCM_3825 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCM_3825 PF16355 Domain of unknown function (DUF4982) XCM_3825 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCM_3825 PF00703 Glycosyl hydrolases family 2 XCM_3825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCM_3845 PF00392 Bacterial regulatory proteins, gntR family XCM_3845 PF07702 UTRA domain XCM_3850 PF07690 Major Facilitator Superfamily XCM_3855 PF00356 Bacterial regulatory proteins, lacI family XCM_3860 PF01380 SIS domain XCM_3865 PF01979 Amidohydrolase family XCM_3875 PF01966 HD domain XCM_3875 PF01743 Poly A polymerase head domain XCM_3875 PF12627 Probable RNA and SrmB- binding site of polymerase A XCM_3880 PF05199 GMC oxidoreductase XCM_3880 PF00732 GMC oxidoreductase XCM_3885 PF00171 Aldehyde dehydrogenase family XCM_3890 PF02028 BCCT, betaine/carnitine/choline family transporter XCM_3900 PF01323 DSBA-like thioredoxin domain XCM_3910 PF00034 Cytochrome c XCM_3915 PF01926 50S ribosome-binding GTPase XCM_3920 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain XCM_3920 PF10996 Beta-Casp domain XCM_3920 PF00753 Metallo-beta-lactamase superfamily XCM_3930 PF04107 Glutamate-cysteine ligase family 2(GCS2) XCM_3935 PF00672 HAMP domain XCM_3935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_3935 PF00512 His Kinase A (phospho-acceptor) domain XCM_3940 PF00072 Response regulator receiver domain XCM_3940 PF00486 Transcriptional regulatory protein, C terminal XCM_3955 PF02583 Metal-sensitive transcriptional repressor XCM_3960 PF08240 Alcohol dehydrogenase GroES-like domain XCM_3960 PF00107 Zinc-binding dehydrogenase XCM_3965 PF04828 Glutathione-dependent formaldehyde-activating enzyme XCM_3970 PF00756 Putative esterase XCM_3985 PF00155 Aminotransferase class I and II XCM_3985 PF00392 Bacterial regulatory proteins, gntR family XCM_3990 PF02567 Phenazine biosynthesis-like protein XCM_3995 PF00892 EamA-like transporter family XCM_4005 PF00005 ABC transporter XCM_4005 PF12848 ABC transporter XCM_4015 PF00464 Serine hydroxymethyltransferase XCM_4020 PF03477 ATP cone domain XCM_4030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XCM_4030 PF01872 RibD C-terminal domain XCM_4040 PF00677 Lumazine binding domain XCM_4045 PF00925 GTP cyclohydrolase II XCM_4045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XCM_4050 PF00885 6,7-dimethyl-8-ribityllumazine synthase XCM_4055 PF01029 NusB family XCM_4060 PF00586 AIR synthase related protein, N-terminal domain XCM_4060 PF02769 AIR synthase related protein, C-terminal domain XCM_4085 PF03814 Potassium-transporting ATPase A subunit XCM_4095 PF02669 K+-transporting ATPase, c chain XCM_4100 PF00512 His Kinase A (phospho-acceptor) domain XCM_4100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_4100 PF13492 GAF domain XCM_4100 PF13493 Domain of unknown function (DUF4118) XCM_4100 PF02702 Osmosensitive K+ channel His kinase sensor domain XCM_4105 PF00486 Transcriptional regulatory protein, C terminal XCM_4105 PF00072 Response regulator receiver domain XCM_4125 PF01565 FAD binding domain XCM_4125 PF02913 FAD linked oxidases, C-terminal domain XCM_4130 PF04307 LexA-binding, inner membrane-associated putative hydrolase XCM_4135 PF02021 Uncharacterised protein family UPF0102 XCM_4145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCM_4165 PF02381 MraZ protein, putative antitoxin-like XCM_4170 PF01795 MraW methylase family XCM_4175 PF04999 Cell division protein FtsL XCM_4180 PF00905 Penicillin binding protein transpeptidase domain XCM_4180 PF03717 Penicillin-binding Protein dimerisation domain XCM_4185 PF02875 Mur ligase family, glutamate ligase domain XCM_4185 PF01225 Mur ligase family, catalytic domain XCM_4185 PF08245 Mur ligase middle domain XCM_4190 PF01225 Mur ligase family, catalytic domain XCM_4190 PF02875 Mur ligase family, glutamate ligase domain XCM_4190 PF08245 Mur ligase middle domain XCM_4195 PF00953 Glycosyl transferase family 4 XCM_4200 PF01098 Cell cycle protein XCM_4205 PF03033 Glycosyltransferase family 28 N-terminal domain XCM_4205 PF04101 Glycosyltransferase family 28 C-terminal domain XCM_4210 PF01225 Mur ligase family, catalytic domain XCM_4210 PF02875 Mur ligase family, glutamate ligase domain XCM_4210 PF08245 Mur ligase middle domain XCM_4215 PF01820 D-ala D-ala ligase N-terminus XCM_4215 PF07478 D-ala D-ala ligase C-terminus XCM_4220 PF08478 POTRA domain, FtsQ-type XCM_4220 PF03799 Cell division protein FtsQ XCM_4225 PF02491 SHS2 domain inserted in FTSA XCM_4230 PF00091 Tubulin/FtsZ family, GTPase domain XCM_4230 PF12327 FtsZ family, C-terminal domain XCM_4235 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XCM_4245 PF01476 LysM domain XCM_4245 PF08525 Opacity-associated protein A N-terminal motif XCM_4245 PF01551 Peptidase family M23 XCM_4250 PF02810 SEC-C motif XCM_4250 PF07517 SecA DEAD-like domain XCM_4250 PF01043 SecA preprotein cross-linking domain XCM_4250 PF07516 SecA Wing and Scaffold domain XCM_4255 PF00293 NUDIX domain XCM_4265 PF02219 Methylenetetrahydrofolate reductase XCM_4280 PF08659 KR domain XCM_4280 PF00698 Acyl transferase domain XCM_4280 PF08240 Alcohol dehydrogenase GroES-like domain XCM_4280 PF00107 Zinc-binding dehydrogenase XCM_4280 PF02801 Beta-ketoacyl synthase, C-terminal domain XCM_4280 PF00109 Beta-ketoacyl synthase, N-terminal domain XCM_4280 PF16197 Ketoacyl-synthetase C-terminal extension XCM_4280 PF14765 Polyketide synthase dehydratase XCM_4280 PF00550 Phosphopantetheine attachment site XCM_4285 PF09286 Pro-kumamolisin, activation domain XCM_4285 PF00082 Subtilase family XCM_4295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCM_4300 PF00128 Alpha amylase, catalytic domain XCM_4320 PF00685 Sulfotransferase domain XCM_4330 PF13649 Methyltransferase domain XCM_4335 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XCM_4335 PF05221 S-adenosyl-L-homocysteine hydrolase XCM_4345 PF00311 Phosphoenolpyruvate carboxylase XCM_4370 PF00328 Histidine phosphatase superfamily (branch 2) XCM_4375 PF02773 S-adenosylmethionine synthetase, C-terminal domain XCM_4375 PF00438 S-adenosylmethionine synthetase, N-terminal domain XCM_4375 PF02772 S-adenosylmethionine synthetase, central domain XCM_4385 PF13649 Methyltransferase domain XCM_4390 PF01207 Dihydrouridine synthase (Dus) XCM_4405 PF00294 pfkB family carbohydrate kinase XCM_4410 PF07670 Nucleoside recognition XCM_4410 PF07662 Na+ dependent nucleoside transporter C-terminus XCM_4410 PF01773 Na+ dependent nucleoside transporter N-terminus XCM_4415 PF00248 Aldo/keto reductase family XCM_4425 PF07715 TonB-dependent Receptor Plug Domain XCM_4425 PF00593 TonB dependent receptor XCM_4445 PF00528 Binding-protein-dependent transport system inner membrane component XCM_4450 PF00005 ABC transporter XCM_4460 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XCM_4470 PF00005 ABC transporter XCM_4475 PF13472 GDSL-like Lipase/Acylhydrolase family XCM_4480 PF00072 Response regulator receiver domain XCM_4480 PF00486 Transcriptional regulatory protein, C terminal XCM_4485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_4485 PF08521 Two-component sensor kinase N-terminal XCM_4485 PF00512 His Kinase A (phospho-acceptor) domain XCM_4495 PF01219 Prokaryotic diacylglycerol kinase XCM_4515 PF01790 Prolipoprotein diacylglyceryl transferase XCM_4520 PF00303 Thymidylate synthase XCM_4530 PF00186 Dihydrofolate reductase XCM_4535 PF00158 Sigma-54 interaction domain XCM_4540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain XCM_4540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_4545 PF00005 ABC transporter XCM_4550 PF00528 Binding-protein-dependent transport system inner membrane component XCM_4560 PF00296 Luciferase-like monooxygenase XCM_4565 PF03358 NADPH-dependent FMN reductase XCM_4595 PF00296 Luciferase-like monooxygenase XCM_4600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XCM_4605 PF00528 Binding-protein-dependent transport system inner membrane component XCM_4610 PF00528 Binding-protein-dependent transport system inner membrane component XCM_4610 PF12911 N-terminal TM domain of oligopeptide transport permease C XCM_4615 PF00005 ABC transporter XCM_4615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XCM_4620 PF00149 Calcineurin-like phosphoesterase XCM_4625 PF04379 ApaG domain XCM_4630 PF00398 Ribosomal RNA adenine dimethylase XCM_4635 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XCM_4640 PF09312 SurA N-terminal domain XCM_4640 PF00639 PPIC-type PPIASE domain XCM_4645 PF04453 LPS transport system D XCM_4645 PF03968 OstA-like protein XCM_4650 PF00850 Histone deacetylase domain XCM_4655 PF01923 Cobalamin adenosyltransferase XCM_4665 PF01494 FAD binding domain XCM_4670 PF01494 FAD binding domain XCM_4690 PF07729 FCD domain XCM_4690 PF00392 Bacterial regulatory proteins, gntR family XCM_4695 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCM_4700 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XCM_4700 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCM_4705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_4705 PF03466 LysR substrate binding domain XCM_4710 PF13193 AMP-binding enzyme C-terminal domain XCM_4710 PF00501 AMP-binding enzyme XCM_4715 PF00171 Aldehyde dehydrogenase family XCM_4720 PF00171 Aldehyde dehydrogenase family XCM_4725 PF00378 Enoyl-CoA hydratase/isomerase XCM_4745 PF08450 SMP-30/Gluconolactonase/LRE-like region XCM_4750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCM_4750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCM_4755 PF18125 RlmM ferredoxin-like domain XCM_4755 PF01728 FtsJ-like methyltransferase XCM_4770 PF00892 EamA-like transporter family XCM_4775 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCM_4775 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XCM_4790 PF00072 Response regulator receiver domain XCM_4790 PF00990 Diguanylate cyclase, GGDEF domain XCM_4800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCM_4800 PF00072 Response regulator receiver domain XCM_4800 PF01627 Hpt domain XCM_4800 PF00512 His Kinase A (phospho-acceptor) domain XCM_4800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_4800 PF00672 HAMP domain XCM_4805 PF00196 Bacterial regulatory proteins, luxR family XCM_4805 PF00072 Response regulator receiver domain XCM_4815 PF01625 Peptide methionine sulfoxide reductase XCM_4830 PF00923 Transaldolase/Fructose-6-phosphate aldolase XCM_4835 PF01272 Transcription elongation factor, GreA/GreB, C-term XCM_4835 PF14760 Rnk N-terminus XCM_4840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_4840 PF03466 LysR substrate binding domain XCM_4845 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_4845 PF13192 Thioredoxin domain XCM_4850 PF10417 C-terminal domain of 1-Cys peroxiredoxin XCM_4850 PF00578 AhpC/TSA family XCM_4855 PF05175 Methyltransferase small domain XCM_4855 PF17827 PrmC N-terminal domain XCM_4860 PF00561 alpha/beta hydrolase fold XCM_4870 PF00293 NUDIX domain XCM_4875 PF01612 3'-5' exonuclease XCM_4875 PF00476 DNA polymerase family A XCM_4875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCM_4875 PF01367 5'-3' exonuclease, C-terminal SAM fold XCM_4905 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XCM_4905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XCM_4905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XCM_4925 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XCM_4930 PF02233 NAD(P) transhydrogenase beta subunit XCM_4945 PF01063 Amino-transferase class IV XCM_4950 PF00082 Subtilase family XCM_4950 PF04151 Bacterial pre-peptidase C-terminal domain XCM_4955 PF00082 Subtilase family XCM_4955 PF04151 Bacterial pre-peptidase C-terminal domain XCM_4960 PF00082 Subtilase family XCM_4960 PF04151 Bacterial pre-peptidase C-terminal domain XCM_4965 PF04073 Aminoacyl-tRNA editing domain XCM_4990 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain XCM_4990 PF17189 Glycosyl hydrolase family 30 beta sandwich domain XCM_5000 PF03358 NADPH-dependent FMN reductase XCM_5005 PF03631 Virulence factor BrkB XCM_5010 PF08534 Redoxin XCM_5015 PF00708 Acylphosphatase XCM_5025 PF03976 Polyphosphate kinase 2 (PPK2) XCM_5030 PF00994 Probable molybdopterin binding domain XCM_5040 PF03462 PCRF domain XCM_5040 PF00472 RF-1 domain XCM_5045 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XCM_5045 PF01488 Shikimate / quinate 5-dehydrogenase XCM_5045 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XCM_5055 PF03550 Outer membrane lipoprotein LolB XCM_5060 PF08544 GHMP kinases C terminal XCM_5060 PF00288 GHMP kinases N terminal domain XCM_5065 PF14572 Phosphoribosyl synthetase-associated domain XCM_5065 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XCM_5070 PF01386 Ribosomal L25p family XCM_5070 PF14693 Ribosomal protein TL5, C-terminal domain XCM_5075 PF01195 Peptidyl-tRNA hydrolase XCM_5080 PF06071 Protein of unknown function (DUF933) XCM_5080 PF01926 50S ribosome-binding GTPase XCM_5085 PF03144 Elongation factor Tu domain 2 XCM_5085 PF03143 Elongation factor Tu C-terminal domain XCM_5085 PF00009 Elongation factor Tu GTP binding domain XCM_5090 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XCM_5095 PF02357 Transcription termination factor nusG XCM_5095 PF00467 KOW motif XCM_5100 PF00298 Ribosomal protein L11, RNA binding domain XCM_5100 PF03946 Ribosomal protein L11, N-terminal domain XCM_5105 PF00687 Ribosomal protein L1p/L10e family XCM_5110 PF00466 Ribosomal protein L10 XCM_5115 PF16320 Ribosomal protein L7/L12 dimerisation domain XCM_5115 PF00542 Ribosomal protein L7/L12 C-terminal domain XCM_5120 PF00562 RNA polymerase Rpb2, domain 6 XCM_5120 PF04560 RNA polymerase Rpb2, domain 7 XCM_5120 PF10385 RNA polymerase beta subunit external 1 domain XCM_5120 PF04565 RNA polymerase Rpb2, domain 3 XCM_5120 PF04563 RNA polymerase beta subunit XCM_5120 PF04561 RNA polymerase Rpb2, domain 2 XCM_5125 PF04998 RNA polymerase Rpb1, domain 5 XCM_5125 PF04997 RNA polymerase Rpb1, domain 1 XCM_5125 PF00623 RNA polymerase Rpb1, domain 2 XCM_5125 PF04983 RNA polymerase Rpb1, domain 3 XCM_5125 PF05000 RNA polymerase Rpb1, domain 4 XCM_5130 PF00164 Ribosomal protein S12/S23 XCM_5135 PF00177 Ribosomal protein S7p/S5e XCM_5140 PF00009 Elongation factor Tu GTP binding domain XCM_5140 PF03764 Elongation factor G, domain IV XCM_5140 PF14492 Elongation Factor G, domain II XCM_5140 PF03144 Elongation factor Tu domain 2 XCM_5140 PF00679 Elongation factor G C-terminus XCM_5145 PF00009 Elongation factor Tu GTP binding domain XCM_5145 PF03144 Elongation factor Tu domain 2 XCM_5145 PF03143 Elongation factor Tu C-terminal domain XCM_5150 PF00338 Ribosomal protein S10p/S20e XCM_5155 PF00297 Ribosomal protein L3 XCM_5160 PF00573 Ribosomal protein L4/L1 family XCM_5165 PF00276 Ribosomal protein L23 XCM_5170 PF00181 Ribosomal Proteins L2, RNA binding domain XCM_5170 PF03947 Ribosomal Proteins L2, C-terminal domain XCM_5175 PF00203 Ribosomal protein S19 XCM_5180 PF00237 Ribosomal protein L22p/L17e XCM_5185 PF07650 KH domain XCM_5185 PF00189 Ribosomal protein S3, C-terminal domain XCM_5190 PF00252 Ribosomal protein L16p/L10e XCM_5195 PF00831 Ribosomal L29 protein XCM_5200 PF00366 Ribosomal protein S17 XCM_5205 PF00238 Ribosomal protein L14p/L23e XCM_5210 PF00467 KOW motif XCM_5210 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XCM_5215 PF00281 Ribosomal protein L5 XCM_5215 PF00673 ribosomal L5P family C-terminus XCM_5220 PF00253 Ribosomal protein S14p/S29e XCM_5225 PF00410 Ribosomal protein S8 XCM_5230 PF00347 Ribosomal protein L6 XCM_5235 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XCM_5240 PF00333 Ribosomal protein S5, N-terminal domain XCM_5240 PF03719 Ribosomal protein S5, C-terminal domain XCM_5245 PF00327 Ribosomal protein L30p/L7e XCM_5250 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XCM_5255 PF00344 SecY translocase XCM_5260 PF00416 Ribosomal protein S13/S18 XCM_5265 PF00411 Ribosomal protein S11 XCM_5270 PF00163 Ribosomal protein S4/S9 N-terminal domain XCM_5270 PF01479 S4 domain XCM_5275 PF01000 RNA polymerase Rpb3/RpoA insert domain XCM_5275 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XCM_5275 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XCM_5280 PF01196 Ribosomal protein L17 XCM_5285 PF02600 Disulfide bond formation protein DsbB XCM_5300 PF01474 Class-II DAHP synthetase family XCM_5310 PF01425 Amidase XCM_5320 PF00679 Elongation factor G C-terminus XCM_5320 PF00009 Elongation factor Tu GTP binding domain XCM_5320 PF03144 Elongation factor Tu domain 2 XCM_5325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCM_5330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XCM_5330 PF00056 lactate/malate dehydrogenase, NAD binding domain XCM_5335 PF00043 Glutathione S-transferase, C-terminal domain XCM_5335 PF02798 Glutathione S-transferase, N-terminal domain XCM_5355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCM_5355 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_5360 PF00107 Zinc-binding dehydrogenase XCM_5360 PF08240 Alcohol dehydrogenase GroES-like domain XCM_5365 PF05736 OprF membrane domain XCM_5365 PF00691 OmpA family XCM_5375 PF00849 RNA pseudouridylate synthase XCM_5385 PF00155 Aminotransferase class I and II XCM_5395 PF00528 Binding-protein-dependent transport system inner membrane component XCM_5400 PF00528 Binding-protein-dependent transport system inner membrane component XCM_5405 PF00005 ABC transporter XCM_5405 PF17850 CysA C-terminal regulatory domain XCM_5405 PF12857 TOBE-like domain XCM_5420 PF08240 Alcohol dehydrogenase GroES-like domain XCM_5420 PF00107 Zinc-binding dehydrogenase XCM_5430 PF04185 Phosphoesterase family XCM_5430 PF05506 Domain of unknown function (DUF756) XCM_5435 PF10459 Peptidase S46 XCM_5440 PF10459 Peptidase S46 XCM_5445 PF00300 Histidine phosphatase superfamily (branch 1) XCM_5455 PF02875 Mur ligase family, glutamate ligase domain XCM_5455 PF08245 Mur ligase middle domain XCM_5470 PF00156 Phosphoribosyl transferase domain XCM_5475 PF04305 Protein of unknown function (DUF455) XCM_5490 PF00149 Calcineurin-like phosphoesterase XCM_5500 PF01569 PAP2 superfamily XCM_5505 PF13439 Glycosyltransferase Family 4 XCM_5505 PF00534 Glycosyl transferases group 1 XCM_5510 PF02541 Ppx/GppA phosphatase family XCM_5515 PF13089 Polyphosphate kinase N-terminal domain XCM_5515 PF13090 Polyphosphate kinase C-terminal domain 2 XCM_5515 PF02503 Polyphosphate kinase middle domain XCM_5515 PF17941 Polyphosphate kinase C-terminal domain 1 XCM_5520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_5520 PF00512 His Kinase A (phospho-acceptor) domain XCM_5520 PF11808 Phosphate regulon sensor protein PhoR XCM_5520 PF00989 PAS fold XCM_5525 PF00486 Transcriptional regulatory protein, C terminal XCM_5525 PF00072 Response regulator receiver domain XCM_5530 PF13181 Tetratricopeptide repeat XCM_5530 PF01435 Peptidase family M48 XCM_5535 PF00462 Glutaredoxin XCM_5545 PF00180 Isocitrate/isopropylmalate dehydrogenase XCM_5555 PF00512 His Kinase A (phospho-acceptor) domain XCM_5555 PF00989 PAS fold XCM_5555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_5560 PF05697 Bacterial trigger factor protein (TF) XCM_5560 PF05698 Bacterial trigger factor protein (TF) C-terminus XCM_5565 PF00574 Clp protease XCM_5570 PF06689 ClpX C4-type zinc finger XCM_5570 PF10431 C-terminal, D2-small domain, of ClpB protein XCM_5570 PF07724 AAA domain (Cdc48 subfamily) XCM_5575 PF05362 Lon protease (S16) C-terminal proteolytic domain XCM_5575 PF00004 ATPase family associated with various cellular activities (AAA) XCM_5575 PF02190 ATP-dependent protease La (LON) substrate-binding domain XCM_5580 PF00216 Bacterial DNA-binding protein XCM_5595 PF01476 LysM domain XCM_5595 PF05257 CHAP domain XCM_5600 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCM_5600 PF00753 Metallo-beta-lactamase superfamily XCM_5610 PF00075 RNase H XCM_5615 PF00929 Exonuclease XCM_5630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XCM_5640 PF12706 Beta-lactamase superfamily domain XCM_5640 PF00753 Metallo-beta-lactamase superfamily XCM_5645 PF06463 Molybdenum Cofactor Synthesis C XCM_5645 PF04055 Radical SAM superfamily XCM_5650 PF01967 MoaC family XCM_5655 PF02597 ThiS family XCM_5660 PF02391 MoaE protein XCM_5665 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XCM_5665 PF12169 DNA polymerase III subunits gamma and tau domain III XCM_5665 PF12170 DNA polymerase III tau subunit V interacting with alpha XCM_5670 PF02575 YbaB/EbfC DNA-binding family XCM_5675 PF02132 RecR protein XCM_5675 PF13662 Toprim domain XCM_5680 PF01230 HIT domain XCM_5690 PF01841 Transglutaminase-like superfamily XCM_5690 PF11992 Domain of unknown function (DUF3488) XCM_5690 PF13559 Domain of unknown function (DUF4129) XCM_5700 PF07726 ATPase family associated with various cellular activities (AAA) XCM_5700 PF17863 AAA lid domain XCM_5720 PF02545 Maf-like protein XCM_5725 PF02620 Large ribosomal RNA subunit accumulation protein YceD XCM_5730 PF01783 Ribosomal L32p protein family XCM_5735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCM_5735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCM_5745 PF00698 Acyl transferase domain XCM_5755 PF00550 Phosphopantetheine attachment site XCM_5760 PF00109 Beta-ketoacyl synthase, N-terminal domain XCM_5760 PF02801 Beta-ketoacyl synthase, C-terminal domain XCM_5765 PF00425 chorismate binding enzyme XCM_5765 PF04715 Anthranilate synthase component I, N terminal region XCM_5770 PF02618 YceG-like family XCM_5775 PF09115 DNA polymerase III, delta subunit, C terminal XCM_5790 PF02954 Bacterial regulatory protein, Fis family XCM_5790 PF06506 Propionate catabolism activator XCM_5790 PF00158 Sigma-54 interaction domain XCM_5800 PF00285 Citrate synthase, C-terminal domain XCM_5805 PF00330 Aconitase family (aconitate hydratase) XCM_5805 PF00694 Aconitase C-terminal domain XCM_5810 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XCM_5820 PF04303 PrpF protein XCM_5825 PF07715 TonB-dependent Receptor Plug Domain XCM_5825 PF00593 TonB dependent receptor XCM_5835 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XCM_5835 PF01835 MG2 domain XCM_5835 PF00207 Alpha-2-macroglobulin family XCM_5835 PF07703 Alpha-2-macroglobulin bait region domain XCM_5835 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XCM_5835 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XCM_5835 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XCM_5835 PF17962 Bacterial macroglobulin domain 6 XCM_5840 PF00207 Alpha-2-macroglobulin family XCM_5840 PF07703 Alpha-2-macroglobulin bait region domain XCM_5840 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XCM_5840 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XCM_5840 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XCM_5840 PF01835 MG2 domain XCM_5840 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XCM_5840 PF17962 Bacterial macroglobulin domain 6 XCM_5855 PF00905 Penicillin binding protein transpeptidase domain XCM_5855 PF00912 Transglycosylase XCM_5855 PF06832 Penicillin-Binding Protein C-terminus Family XCM_5865 PF08534 Redoxin XCM_5875 PF01556 DnaJ C terminal domain XCM_5875 PF00226 DnaJ domain XCM_5885 PF00072 Response regulator receiver domain XCM_5890 PF01145 SPFH domain / Band 7 family XCM_5890 PF12221 Bacterial membrane protein N terminal XCM_5895 PF01145 SPFH domain / Band 7 family XCM_5905 PF00709 Adenylosuccinate synthetase XCM_5910 PF01433 Peptidase family M1 domain XCM_5910 PF11838 ERAP1-like C-terminal domain XCM_5925 PF00440 Bacterial regulatory proteins, tetR family XCM_5955 PF13700 Domain of unknown function (DUF4158) XCM_5955 PF01526 Tn3 transposase DDE domain XCM_5960 PF11740 Plasmid replication region DNA-binding N-term XCM_5970 PF03377 TAL effector repeat XCM_5995 PF03377 TAL effector repeat XCM_6000 PF01527 Transposase XCM_6005 PF00665 Integrase core domain XCM_6005 PF13276 HTH-like domain XCM_6005 PF13333 Integrase core domain XCM_6010 PF13333 Integrase core domain XCM_6010 PF00665 Integrase core domain XCM_6010 PF13276 HTH-like domain XCM_6015 PF01527 Transposase XCM_6025 PF00239 Resolvase, N terminal domain XCM_6025 PF02796 Helix-turn-helix domain of resolvase XCM_6030 PF09386 Antitoxin ParD XCM_6035 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XCM_6045 PF01527 Transposase XCM_6050 PF13276 HTH-like domain XCM_6050 PF00665 Integrase core domain XCM_6050 PF13333 Integrase core domain XCM_6055 PF13276 HTH-like domain XCM_6055 PF00665 Integrase core domain XCM_6055 PF13333 Integrase core domain XCM_6060 PF01527 Transposase XCM_6070 PF13276 HTH-like domain XCM_6070 PF13333 Integrase core domain XCM_6070 PF00665 Integrase core domain XCM_6075 PF01527 Transposase XCM_6085 PF03377 TAL effector repeat XCM_6090 PF01527 Transposase XCM_6095 PF00665 Integrase core domain XCM_6095 PF13333 Integrase core domain XCM_6095 PF13276 HTH-like domain XCM_6105 PF00665 Integrase core domain XCM_6105 PF13276 HTH-like domain XCM_6130 PF13700 Domain of unknown function (DUF4158) XCM_6130 PF01526 Tn3 transposase DDE domain XCM_6135 PF03377 TAL effector repeat XCM_6190 PF13456 Reverse transcriptase-like XCM_6190 PF00300 Histidine phosphatase superfamily (branch 1) XCM_6195 PF01256 Carbohydrate kinase XCM_6215 PF00723 Glycosyl hydrolases family 15 XCM_6225 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCM_6225 PF07971 Glycosyl hydrolase family 92 XCM_6235 PF00106 short chain dehydrogenase XCM_6245 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_6265 PF17755 UvrA DNA-binding domain XCM_6270 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCM_6270 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCM_6275 PF00941 FAD binding domain in molybdopterin dehydrogenase XCM_6275 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCM_6280 PF01799 [2Fe-2S] binding domain XCM_6280 PF00111 2Fe-2S iron-sulfur cluster binding domain XCM_6300 PF13276 HTH-like domain XCM_6300 PF00665 Integrase core domain XCM_6300 PF13333 Integrase core domain XCM_6305 PF01527 Transposase XCM_6310 PF01734 Patatin-like phospholipase XCM_6330 PF01527 Transposase XCM_6335 PF13276 HTH-like domain XCM_6335 PF00665 Integrase core domain XCM_6335 PF13333 Integrase core domain XCM_6355 PF00128 Alpha amylase, catalytic domain XCM_6355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCM_6360 PF08443 RimK-like ATP-grasp domain XCM_6360 PF18030 RimK PreATP-grasp domain XCM_6370 PF00072 Response regulator receiver domain XCM_6370 PF00486 Transcriptional regulatory protein, C terminal XCM_6375 PF16736 Single Cache-like XCM_6375 PF00989 PAS fold XCM_6375 PF00512 His Kinase A (phospho-acceptor) domain XCM_6375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_6390 PF05593 RHS Repeat XCM_6390 PF03527 RHS protein XCM_6400 PF01121 Dephospho-CoA kinase XCM_6405 PF01478 Type IV leader peptidase family XCM_6405 PF06750 Bacterial Peptidase A24 N-terminal domain XCM_6410 PF00482 Type II secretion system (T2SS), protein F XCM_6420 PF07963 Prokaryotic N-terminal methylation motif XCM_6420 PF00114 Pilin (bacterial filament) XCM_6425 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCM_6425 PF00437 Type II/IV secretion system protein XCM_6435 PF00437 Type II/IV secretion system protein XCM_6435 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCM_6440 PF00158 Sigma-54 interaction domain XCM_6440 PF00072 Response regulator receiver domain XCM_6440 PF02954 Bacterial regulatory protein, Fis family XCM_6445 PF00512 His Kinase A (phospho-acceptor) domain XCM_6445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_6450 PF00549 CoA-ligase XCM_6450 PF08442 ATP-grasp domain XCM_6455 PF00549 CoA-ligase XCM_6455 PF02629 CoA binding domain XCM_6465 PF02540 NAD synthase XCM_6465 PF00795 Carbon-nitrogen hydrolase XCM_6475 PF13525 Outer membrane lipoprotein XCM_6480 PF00849 RNA pseudouridylate synthase XCM_6485 PF02578 Multi-copper polyphenol oxidoreductase laccase XCM_6500 PF02203 Tar ligand binding domain homologue XCM_6500 PF00672 HAMP domain XCM_6500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_6505 PF01011 PQQ enzyme repeat XCM_6510 PF00982 Glycosyltransferase family 20 XCM_6520 PF00723 Glycosyl hydrolases family 15 XCM_6525 PF02358 Trehalose-phosphatase XCM_6530 PF07715 TonB-dependent Receptor Plug Domain XCM_6530 PF00593 TonB dependent receptor XCM_6565 PF13276 HTH-like domain XCM_6565 PF00665 Integrase core domain XCM_6565 PF13333 Integrase core domain XCM_6570 PF01527 Transposase XCM_6575 PF01541 GIY-YIG catalytic domain XCM_6585 PF00296 Luciferase-like monooxygenase XCM_6590 PF00248 Aldo/keto reductase family XCM_6595 PF09084 NMT1/THI5 like XCM_6600 PF00528 Binding-protein-dependent transport system inner membrane component XCM_6605 PF00005 ABC transporter XCM_6610 PF10431 C-terminal, D2-small domain, of ClpB protein XCM_6610 PF02861 Clp amino terminal domain, pathogenicity island component XCM_6610 PF17871 AAA lid domain XCM_6610 PF07724 AAA domain (Cdc48 subfamily) XCM_6610 PF00004 ATPase family associated with various cellular activities (AAA) XCM_6615 PF00593 TonB dependent receptor XCM_6615 PF07715 TonB-dependent Receptor Plug Domain XCM_6630 PF12557 Cob(I)alamin adenosyltransferase N terminal XCM_6630 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XCM_6635 PF03186 CobD/Cbib protein XCM_6635 PF17113 Regulatory signalling modulator protein AmpE XCM_6640 PF00155 Aminotransferase class I and II XCM_6645 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCM_6645 PF07685 CobB/CobQ-like glutamine amidotransferase domain XCM_6650 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XCM_6655 PF02277 Phosphoribosyltransferase XCM_6665 PF02654 Cobalamin-5-phosphate synthase XCM_6680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCM_6680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XCM_6685 PF06276 Ferric iron reductase FhuF-like transporter XCM_6685 PF04183 IucA / IucC family XCM_6690 PF07690 Major Facilitator Superfamily XCM_6695 PF04183 IucA / IucC family XCM_6695 PF06276 Ferric iron reductase FhuF-like transporter XCM_6705 PF07660 Secretin and TonB N terminus short domain XCM_6705 PF00593 TonB dependent receptor XCM_6705 PF07715 TonB-dependent Receptor Plug Domain XCM_6735 PF01527 Transposase XCM_6745 PF02254 TrkA-N domain XCM_6745 PF00999 Sodium/hydrogen exchanger family XCM_6750 PF00067 Cytochrome P450 XCM_6755 PF07715 TonB-dependent Receptor Plug Domain XCM_6755 PF00593 TonB dependent receptor XCM_6760 PF07715 TonB-dependent Receptor Plug Domain XCM_6760 PF00593 TonB dependent receptor XCM_6770 PF07715 TonB-dependent Receptor Plug Domain XCM_6770 PF00593 TonB dependent receptor XCM_6775 PF12848 ABC transporter XCM_6775 PF00005 ABC transporter XCM_6785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_6785 PF03466 LysR substrate binding domain XCM_6800 PF01527 Transposase XCM_6805 PF00665 Integrase core domain XCM_6805 PF13276 HTH-like domain XCM_6805 PF13333 Integrase core domain XCM_6810 PF05506 Domain of unknown function (DUF756) XCM_6810 PF04185 Phosphoesterase family XCM_6820 PF07690 Major Facilitator Superfamily XCM_6835 PF02938 GAD domain XCM_6835 PF01336 OB-fold nucleic acid binding domain XCM_6835 PF00152 tRNA synthetases class II (D, K and N) XCM_6855 PF01709 Transcriptional regulator XCM_6860 PF02075 Crossover junction endodeoxyribonuclease RuvC XCM_6865 PF07499 RuvA, C-terminal domain XCM_6865 PF01330 RuvA N terminal domain XCM_6870 PF02705 K+ potassium transporter XCM_6880 PF05491 RuvB C-terminal winged helix domain XCM_6880 PF17864 RuvB AAA lid domain XCM_6880 PF05496 Holliday junction DNA helicase RuvB P-loop domain XCM_6885 PF03061 Thioesterase superfamily XCM_6890 PF01618 MotA/TolQ/ExbB proton channel family XCM_6895 PF02472 Biopolymer transport protein ExbD/TolR XCM_6905 PF04052 TolB amino-terminal domain XCM_6905 PF07676 WD40-like Beta Propeller Repeat XCM_6910 PF00691 OmpA family XCM_6920 PF04055 Radical SAM superfamily XCM_6925 PF06508 Queuosine biosynthesis protein QueC XCM_6930 PF13581 Histidine kinase-like ATPase domain XCM_6930 PF13426 PAS domain XCM_6930 PF07536 HWE histidine kinase XCM_6940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_6940 PF03466 LysR substrate binding domain XCM_6945 PF01810 LysE type translocator XCM_6950 PF00672 HAMP domain XCM_6950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_6950 PF02203 Tar ligand binding domain homologue XCM_6985 PF00570 HRDC domain XCM_6985 PF00271 Helicase conserved C-terminal domain XCM_6985 PF00270 DEAD/DEAH box helicase XCM_6985 PF16124 RecQ zinc-binding XCM_6985 PF09382 RQC domain XCM_6995 PF00210 Ferritin-like domain XCM_7000 PF04408 Helicase associated domain (HA2) XCM_7000 PF11898 Domain of unknown function (DUF3418) XCM_7000 PF00270 DEAD/DEAH box helicase XCM_7000 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XCM_7000 PF00271 Helicase conserved C-terminal domain XCM_7010 PF02685 Glucokinase XCM_7025 PF04055 Radical SAM superfamily XCM_7025 PF13186 Iron-sulfur cluster-binding domain XCM_7030 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XCM_7035 PF03070 TENA/THI-4/PQQC family XCM_7040 PF12706 Beta-lactamase superfamily domain XCM_7045 PF13291 ACT domain XCM_7045 PF04607 Region found in RelA / SpoT proteins XCM_7045 PF02824 TGS domain XCM_7055 PF00535 Glycosyl transferase family 2 XCM_7060 PF14814 Bifunctional transglycosylase second domain XCM_7060 PF00912 Transglycosylase XCM_7060 PF00905 Penicillin binding protein transpeptidase domain XCM_7070 PF04851 Type III restriction enzyme, res subunit XCM_7070 PF13307 Helicase C-terminal domain XCM_7075 PF00814 Glycoprotease family XCM_7080 PF03747 ADP-ribosylglycohydrolase XCM_7090 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XCM_7090 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XCM_7095 PF00072 Response regulator receiver domain XCM_7100 PF00072 Response regulator receiver domain XCM_7105 PF01584 CheW-like domain XCM_7110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_7110 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XCM_7115 PF00072 Response regulator receiver domain XCM_7115 PF01584 CheW-like domain XCM_7115 PF02895 Signal transducing histidine kinase, homodimeric domain XCM_7115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_7115 PF01627 Hpt domain XCM_7130 PF13302 Acetyltransferase (GNAT) domain XCM_7145 PF01112 Asparaginase XCM_7150 PF03932 CutC family XCM_7180 PF01301 Glycosyl hydrolases family 35 XCM_7185 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCM_7185 PF07971 Glycosyl hydrolase family 92 XCM_7195 PF02056 Family 4 glycosyl hydrolase XCM_7195 PF11975 Family 4 glycosyl hydrolase C-terminal domain XCM_7205 PF13520 Amino acid permease XCM_7210 PF01301 Glycosyl hydrolases family 35 XCM_7220 PF07691 PA14 domain XCM_7220 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCM_7220 PF14310 Fibronectin type III-like domain XCM_7220 PF00933 Glycosyl hydrolase family 3 N terminal domain XCM_7230 PF00728 Glycosyl hydrolase family 20, catalytic domain XCM_7230 PF02838 Glycosyl hydrolase family 20, domain 2 XCM_7230 PF07691 PA14 domain XCM_7235 PF01476 LysM domain XCM_7235 PF00704 Glycosyl hydrolases family 18 XCM_7250 PF02685 Glucokinase XCM_7255 PF04452 RNA methyltransferase XCM_7260 PF00202 Aminotransferase class-III XCM_7265 PF00293 NUDIX domain XCM_7270 PF00459 Inositol monophosphatase family XCM_7275 PF03819 MazG nucleotide pyrophosphohydrolase domain XCM_7280 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XCM_7290 PF01571 Aminomethyltransferase folate-binding domain XCM_7290 PF08669 Glycine cleavage T-protein C-terminal barrel domain XCM_7295 PF01597 Glycine cleavage H-protein XCM_7320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCM_7320 PF09317 Domain of unknown function (DUF1974) XCM_7320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCM_7325 PF00561 alpha/beta hydrolase fold XCM_7330 PF00440 Bacterial regulatory proteins, tetR family XCM_7335 PF07715 TonB-dependent Receptor Plug Domain XCM_7335 PF00593 TonB dependent receptor XCM_7345 PF01430 Hsp33 protein XCM_7350 PF00912 Transglycosylase XCM_7355 PF00535 Glycosyl transferase family 2 XCM_7360 PF00571 CBS domain XCM_7360 PF00478 IMP dehydrogenase / GMP reductase domain XCM_7365 PF05170 AsmA family XCM_7370 PF03006 Haemolysin-III related XCM_7375 PF00009 Elongation factor Tu GTP binding domain XCM_7375 PF16658 Class II release factor RF3, C-terminal domain XCM_7380 PF08525 Opacity-associated protein A N-terminal motif XCM_7380 PF01551 Peptidase family M23 XCM_7380 PF01476 LysM domain XCM_7385 PF00561 alpha/beta hydrolase fold XCM_7390 PF01053 Cys/Met metabolism PLP-dependent enzyme XCM_7395 PF03447 Homoserine dehydrogenase, NAD binding domain XCM_7395 PF00742 Homoserine dehydrogenase XCM_7395 PF00696 Amino acid kinase family XCM_7400 PF12697 Alpha/beta hydrolase family XCM_7405 PF03315 Serine dehydratase beta chain XCM_7405 PF03313 Serine dehydratase alpha chain XCM_7425 PF04264 YceI-like domain XCM_7430 PF00072 Response regulator receiver domain XCM_7430 PF01627 Hpt domain XCM_7430 PF00512 His Kinase A (phospho-acceptor) domain XCM_7430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_7435 PF00989 PAS fold XCM_7435 PF00072 Response regulator receiver domain XCM_7435 PF01627 Hpt domain XCM_7435 PF18415 Histidine kinase receptor ArcB trans-membrane domain XCM_7435 PF00512 His Kinase A (phospho-acceptor) domain XCM_7435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_7440 PF01627 Hpt domain XCM_7440 PF00512 His Kinase A (phospho-acceptor) domain XCM_7440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_7440 PF00672 HAMP domain XCM_7440 PF17149 Periplasmic sensor domain found in signal transduction proteins XCM_7440 PF00072 Response regulator receiver domain XCM_7445 PF01627 Hpt domain XCM_7445 PF00512 His Kinase A (phospho-acceptor) domain XCM_7445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_7445 PF00672 HAMP domain XCM_7445 PF17149 Periplasmic sensor domain found in signal transduction proteins XCM_7445 PF00072 Response regulator receiver domain XCM_7450 PF07690 Major Facilitator Superfamily XCM_7465 PF01208 Uroporphyrinogen decarboxylase (URO-D) XCM_7475 PF01761 3-dehydroquinate synthase XCM_7480 PF01202 Shikimate kinase XCM_7485 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XCM_7485 PF01243 Pyridoxamine 5'-phosphate oxidase XCM_7495 PF04012 PspA/IM30 family XCM_7520 PF03738 Glutathionylspermidine synthase preATP-grasp XCM_7530 PF07690 Major Facilitator Superfamily XCM_7535 PF09278 MerR, DNA binding XCM_7535 PF00376 MerR family regulatory protein XCM_7560 PF04820 Tryptophan halogenase XCM_7565 PF12706 Beta-lactamase superfamily domain XCM_7600 PF00324 Amino acid permease XCM_7605 PF00196 Bacterial regulatory proteins, luxR family XCM_7610 PF00561 alpha/beta hydrolase fold XCM_7615 PF00544 Pectate lyase XCM_7625 PF00544 Pectate lyase XCM_7630 PF00324 Amino acid permease XCM_7655 PF01654 Cytochrome bd terminal oxidase subunit I XCM_7660 PF02322 Cytochrome bd terminal oxidase subunit II XCM_7665 PF00756 Putative esterase XCM_7670 PF03448 MgtE intracellular N domain XCM_7670 PF00571 CBS domain XCM_7670 PF01769 Divalent cation transporter XCM_7675 PF02896 PEP-utilising enzyme, TIM barrel domain XCM_7675 PF00391 PEP-utilising enzyme, mobile domain XCM_7675 PF05524 PEP-utilising enzyme, N-terminal XCM_7680 PF00381 PTS HPr component phosphorylation site XCM_7690 PF03668 P-loop ATPase protein family XCM_7695 PF02603 HPr Serine kinase N terminus XCM_7695 PF07475 HPr Serine kinase C-terminal domain XCM_7700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCM_7705 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XCM_7710 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCM_7710 PF04963 Sigma-54 factor, core binding domain XCM_7710 PF04552 Sigma-54, DNA binding domain XCM_7715 PF00005 ABC transporter XCM_7720 PF03968 OstA-like protein XCM_7735 PF01380 SIS domain XCM_7735 PF00571 CBS domain XCM_7740 PF01722 BolA-like protein XCM_7745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCM_7765 PF00551 Formyl transferase XCM_7780 PF02769 AIR synthase related protein, C-terminal domain XCM_7780 PF00586 AIR synthase related protein, N-terminal domain XCM_7790 PF01594 AI-2E family transporter XCM_7795 PF00308 Bacterial dnaA protein XCM_7800 PF00483 Nucleotidyl transferase XCM_7805 PF01636 Phosphotransferase enzyme family XCM_7835 PF00667 FAD binding domain XCM_7835 PF00258 Flavodoxin XCM_7835 PF00175 Oxidoreductase NAD-binding domain XCM_7840 PF02424 ApbE family XCM_7865 PF18331 PKHD-type hydroxylase C-terminal domain XCM_7865 PF13640 2OG-Fe(II) oxygenase superfamily XCM_7870 PF07715 TonB-dependent Receptor Plug Domain XCM_7870 PF00593 TonB dependent receptor XCM_7875 PF00355 Rieske [2Fe-2S] domain XCM_7885 PF00266 Aminotransferase class-V XCM_7890 PF01458 Uncharacterized protein family (UPF0051) XCM_7895 PF00005 ABC transporter XCM_7900 PF01458 Uncharacterized protein family (UPF0051) XCM_7905 PF02082 Transcriptional regulator XCM_7915 PF01965 DJ-1/PfpI family XCM_7930 PF03377 TAL effector repeat XCM_7950 PF13333 Integrase core domain XCM_7950 PF13276 HTH-like domain XCM_7950 PF00665 Integrase core domain XCM_7955 PF01527 Transposase XCM_7970 PF03377 TAL effector repeat XCM_7975 PF01527 Transposase XCM_7980 PF13333 Integrase core domain XCM_7980 PF00665 Integrase core domain XCM_7980 PF13276 HTH-like domain XCM_7985 PF01527 Transposase XCM_8000 PF01527 Transposase XCM_8020 PF01551 Peptidase family M23 XCM_8030 PF03807 NADP oxidoreductase coenzyme F420-dependent XCM_8030 PF14748 Pyrroline-5-carboxylate reductase dimerisation XCM_8035 PF01168 Alanine racemase, N-terminal domain XCM_8040 PF00437 Type II/IV secretion system protein XCM_8045 PF00437 Type II/IV secretion system protein XCM_8060 PF00958 GMP synthase C terminal domain XCM_8060 PF13673 Acetyltransferase (GNAT) domain XCM_8060 PF13302 Acetyltransferase (GNAT) domain XCM_8060 PF03352 Methyladenine glycosylase XCM_8060 PF00117 Glutamine amidotransferase class-I XCM_8065 PF02622 Uncharacterized ACR, COG1678 XCM_8070 PF03652 Holliday junction resolvase XCM_8075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCM_8075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCM_8080 PF02566 OsmC-like protein XCM_8090 PF02567 Phenazine biosynthesis-like protein XCM_8095 PF02567 Phenazine biosynthesis-like protein XCM_8105 PF00696 Amino acid kinase family XCM_8105 PF01842 ACT domain XCM_8120 PF02875 Mur ligase family, glutamate ligase domain XCM_8120 PF08245 Mur ligase middle domain XCM_8130 PF00348 Polyprenyl synthetase XCM_8135 PF00436 Single-strand binding protein family XCM_8140 PF00563 EAL domain XCM_8140 PF01590 GAF domain XCM_8140 PF00990 Diguanylate cyclase, GGDEF domain XCM_8140 PF00360 Phytochrome region XCM_8145 PF14765 Polyketide synthase dehydratase XCM_8145 PF00550 Phosphopantetheine attachment site XCM_8145 PF08659 KR domain XCM_8145 PF02801 Beta-ketoacyl synthase, C-terminal domain XCM_8145 PF00107 Zinc-binding dehydrogenase XCM_8145 PF16197 Ketoacyl-synthetase C-terminal extension XCM_8145 PF08240 Alcohol dehydrogenase GroES-like domain XCM_8145 PF00698 Acyl transferase domain XCM_8145 PF00109 Beta-ketoacyl synthase, N-terminal domain XCM_8150 PF00111 2Fe-2S iron-sulfur cluster binding domain XCM_8150 PF01799 [2Fe-2S] binding domain XCM_8150 PF10518 TAT (twin-arginine translocation) pathway signal sequence XCM_8155 PF00941 FAD binding domain in molybdopterin dehydrogenase XCM_8155 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCM_8160 PF00941 FAD binding domain in molybdopterin dehydrogenase XCM_8160 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCM_8165 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCM_8165 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCM_8170 PF13478 XdhC Rossmann domain XCM_8170 PF02625 XdhC and CoxI family XCM_8215 PF04328 Selenoprotein, putative XCM_8220 PF02554 Carbon starvation protein CstA XCM_8220 PF13722 5TM C-terminal transporter carbon starvation CstA XCM_8225 PF02678 Pirin XCM_8225 PF05726 Pirin C-terminal cupin domain XCM_8245 PF02678 Pirin XCM_8245 PF05726 Pirin C-terminal cupin domain XCM_8255 PF04493 Endonuclease V XCM_8260 PF00300 Histidine phosphatase superfamily (branch 1) XCM_8270 PF05649 Peptidase family M13 XCM_8270 PF01431 Peptidase family M13 XCM_8275 PF13091 PLD-like domain XCM_8280 PF01339 CheB methylesterase XCM_8280 PF00072 Response regulator receiver domain XCM_8285 PF01739 CheR methyltransferase, SAM binding domain XCM_8285 PF03705 CheR methyltransferase, all-alpha domain XCM_8290 PF00563 EAL domain XCM_8290 PF00990 Diguanylate cyclase, GGDEF domain XCM_8290 PF13426 PAS domain XCM_8295 PF01584 CheW-like domain XCM_8300 PF02203 Tar ligand binding domain homologue XCM_8300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_8300 PF00672 HAMP domain XCM_8305 PF01584 CheW-like domain XCM_8305 PF02895 Signal transducing histidine kinase, homodimeric domain XCM_8305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_8305 PF01627 Hpt domain XCM_8305 PF07194 P2 response regulator binding domain XCM_8310 PF02895 Signal transducing histidine kinase, homodimeric domain XCM_8310 PF01627 Hpt domain XCM_8310 PF01584 CheW-like domain XCM_8310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_8320 PF02559 CarD-like/TRCF domain XCM_8320 PF00270 DEAD/DEAH box helicase XCM_8320 PF00271 Helicase conserved C-terminal domain XCM_8320 PF03461 TRCF domain XCM_8320 PF17757 UvrB interaction domain XCM_8335 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XCM_8340 PF00486 Transcriptional regulatory protein, C terminal XCM_8340 PF00072 Response regulator receiver domain XCM_8345 PF00672 HAMP domain XCM_8345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_8345 PF00512 His Kinase A (phospho-acceptor) domain XCM_8355 PF06123 Inner membrane protein CreD XCM_8380 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCM_8385 PF01475 Ferric uptake regulator family XCM_8395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCM_8395 PF00529 HlyD membrane-fusion protein of T1SS XCM_8400 PF00873 AcrB/AcrD/AcrF family XCM_8405 PF02321 Outer membrane efflux protein XCM_8410 PF00440 Bacterial regulatory proteins, tetR family XCM_8410 PF16859 Tetracyclin repressor-like, C-terminal domain XCM_8425 PF06719 AraC-type transcriptional regulator N-terminus XCM_8425 PF12833 Helix-turn-helix domain XCM_8435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_8435 PF03466 LysR substrate binding domain XCM_8440 PF07690 Major Facilitator Superfamily XCM_8445 PF00248 Aldo/keto reductase family XCM_8455 PF01483 Proprotein convertase P-domain XCM_8455 PF00082 Subtilase family XCM_8465 PF01483 Proprotein convertase P-domain XCM_8465 PF00082 Subtilase family XCM_8470 PF00082 Subtilase family XCM_8470 PF01483 Proprotein convertase P-domain XCM_8485 PF13276 HTH-like domain XCM_8485 PF13333 Integrase core domain XCM_8485 PF00665 Integrase core domain XCM_8490 PF01527 Transposase XCM_8505 PF00665 Integrase core domain XCM_8505 PF13333 Integrase core domain XCM_8505 PF13276 HTH-like domain XCM_8510 PF01527 Transposase XCM_8525 PF13406 Transglycosylase SLT domain XCM_8530 PF13700 Domain of unknown function (DUF4158) XCM_8530 PF01526 Tn3 transposase DDE domain XCM_8565 PF01129 NAD:arginine ADP-ribosyltransferase XCM_8580 PF00665 Integrase core domain XCM_8580 PF13276 HTH-like domain XCM_8580 PF13333 Integrase core domain XCM_8585 PF01527 Transposase XCM_8600 PF00593 TonB dependent receptor XCM_8600 PF07715 TonB-dependent Receptor Plug Domain XCM_8615 PF08240 Alcohol dehydrogenase GroES-like domain XCM_8615 PF00107 Zinc-binding dehydrogenase XCM_8620 PF00654 Voltage gated chloride channel XCM_8630 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XCM_8630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XCM_8680 PF00270 DEAD/DEAH box helicase XCM_8680 PF03880 DbpA RNA binding domain XCM_8680 PF00271 Helicase conserved C-terminal domain XCM_8685 PF00563 EAL domain XCM_8685 PF00990 Diguanylate cyclase, GGDEF domain XCM_8685 PF08448 PAS fold XCM_8690 PF00849 RNA pseudouridylate synthase XCM_8690 PF01479 S4 domain XCM_8695 PF00990 Diguanylate cyclase, GGDEF domain XCM_8710 PF03737 Aldolase/RraA XCM_8715 PF00144 Beta-lactamase XCM_8720 PF00999 Sodium/hydrogen exchanger family XCM_8725 PF00672 HAMP domain XCM_8725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_8725 PF00512 His Kinase A (phospho-acceptor) domain XCM_8730 PF00072 Response regulator receiver domain XCM_8730 PF00486 Transcriptional regulatory protein, C terminal XCM_8735 PF02321 Outer membrane efflux protein XCM_8750 PF00873 AcrB/AcrD/AcrF family XCM_8765 PF00664 ABC transporter transmembrane region XCM_8765 PF00005 ABC transporter XCM_8795 PF03466 LysR substrate binding domain XCM_8795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_8805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCM_8810 PF04070 Domain of unknown function (DUF378) XCM_8845 PF13195 Protein of unknown function (DUF4011) XCM_8845 PF13087 AAA domain XCM_8845 PF13086 AAA domain XCM_8855 PF00672 HAMP domain XCM_8855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_8855 PF02203 Tar ligand binding domain homologue XCM_8860 PF01494 FAD binding domain XCM_8870 PF00072 Response regulator receiver domain XCM_8870 PF13188 PAS domain XCM_8870 PF08448 PAS fold XCM_8870 PF00512 His Kinase A (phospho-acceptor) domain XCM_8870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_8875 PF02954 Bacterial regulatory protein, Fis family XCM_8875 PF00072 Response regulator receiver domain XCM_8875 PF00158 Sigma-54 interaction domain XCM_8880 PF06745 KaiC XCM_8885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_8885 PF13426 PAS domain XCM_8885 PF00072 Response regulator receiver domain XCM_8895 PF03918 Cytochrome C biogenesis protein XCM_8900 PF08534 Redoxin XCM_8905 PF01578 Cytochrome C assembly protein XCM_8905 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCM_8910 PF03100 CcmE XCM_8920 PF01578 Cytochrome C assembly protein XCM_8925 PF00082 Subtilase family XCM_8935 PF04542 Sigma-70 region 2 XCM_8935 PF08281 Sigma-70, region 4 XCM_8950 PF00034 Cytochrome c XCM_8965 PF05523 WxcM-like, C-terminal XCM_8985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCM_8990 PF01943 Polysaccharide biosynthesis protein XCM_8995 PF00535 Glycosyl transferase family 2 XCM_9010 PF08241 Methyltransferase domain XCM_9045 PF00005 ABC transporter XCM_9050 PF00664 ABC transporter transmembrane region XCM_9050 PF00005 ABC transporter XCM_9055 PF07690 Major Facilitator Superfamily XCM_9060 PF00296 Luciferase-like monooxygenase XCM_9075 PF00571 CBS domain XCM_9075 PF03471 Transporter associated domain XCM_9075 PF01595 Cyclin M transmembrane N-terminal domain XCM_9085 PF01384 Phosphate transporter family XCM_9100 PF01751 Toprim domain XCM_9100 PF00204 DNA gyrase B XCM_9100 PF00986 DNA gyrase B subunit, carboxyl terminus XCM_9100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCM_9110 PF00117 Glutamine amidotransferase class-I XCM_9110 PF06418 CTP synthase N-terminus XCM_9115 PF00793 DAHP synthetase I family XCM_9125 PF00113 Enolase, C-terminal TIM barrel domain XCM_9125 PF03952 Enolase, N-terminal domain XCM_9130 PF04977 Septum formation initiator XCM_9135 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XCM_9140 PF02542 YgbB family XCM_9145 PF01142 tRNA pseudouridine synthase D (TruD) XCM_9150 PF01713 Smr domain XCM_9155 PF01975 Survival protein SurE XCM_9165 PF09335 SNARE associated Golgi protein XCM_9170 PF01476 LysM domain XCM_9170 PF01551 Peptidase family M23 XCM_9175 PF04430 Protein of unknown function (DUF498/DUF598) XCM_9180 PF01985 CRS1 / YhbY (CRM) domain XCM_9185 PF01728 FtsJ-like methyltransferase XCM_9190 PF01434 Peptidase family M41 XCM_9190 PF00004 ATPase family associated with various cellular activities (AAA) XCM_9190 PF17862 AAA+ lid domain XCM_9190 PF06480 FtsH Extracellular XCM_9195 PF00809 Pterin binding enzyme XCM_9205 PF17209 Hfq protein XCM_9210 PF13167 GTP-binding GTPase N-terminal XCM_9210 PF01926 50S ribosome-binding GTPase XCM_9210 PF16360 GTP-binding GTPase Middle Region XCM_9215 PF02464 Competence-damaged protein XCM_9220 PF03109 ABC1 family XCM_9225 PF01726 LexA DNA binding domain XCM_9225 PF00717 Peptidase S24-like XCM_9230 PF00154 recA bacterial DNA recombination protein XCM_9235 PF02631 RecX family XCM_9240 PF02272 DHHA1 domain XCM_9240 PF01411 tRNA synthetases class II (A) XCM_9240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCM_9245 PF02599 Global regulator protein family XCM_9250 PF13426 PAS domain XCM_9250 PF08447 PAS fold XCM_9250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCM_9255 PF02678 Pirin XCM_9255 PF17954 Quercetinase C-terminal cupin domain XCM_9260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_9260 PF03466 LysR substrate binding domain XCM_9270 PF08543 Phosphomethylpyrimidine kinase XCM_9285 PF02562 PhoH-like protein XCM_9285 PF13638 PIN domain XCM_9290 PF00578 AhpC/TSA family XCM_9305 PF00701 Dihydrodipicolinate synthetase family XCM_9315 PF11953 Domain of unknown function (DUF3470) XCM_9315 PF00037 4Fe-4S binding domain XCM_9320 PF05035 2-keto-3-deoxy-galactonokinase XCM_9325 PF08450 SMP-30/Gluconolactonase/LRE-like region XCM_9330 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCM_9330 PF13378 Enolase C-terminal domain-like XCM_9335 PF01081 KDPG and KHG aldolase XCM_9345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCM_9345 PF03466 LysR substrate binding domain XCM_9360 PF00942 Cellulose binding domain XCM_9360 PF03442 Carbohydrate binding domain X2 XCM_9375 PF16338 Domain of unknown function (DUF4968) XCM_9375 PF17137 Domain of unknown function (DUF5110) XCM_9375 PF01055 Glycosyl hydrolases family 31 XCM_9385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCM_9385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCM_9395 PF00083 Sugar (and other) transporter XCM_9415 PF01520 N-acetylmuramoyl-L-alanine amidase XCM_9420 PF02649 Type I GTP cyclohydrolase folE2 XCM_9430 PF12627 Probable RNA and SrmB- binding site of polymerase A XCM_9430 PF12626 Polymerase A arginine-rich C-terminus XCM_9430 PF01743 Poly A polymerase head domain XCM_9435 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCM_9440 PF02548 Ketopantoate hydroxymethyltransferase XCM_9445 PF02569 Pantoate-beta-alanine ligase XCM_9450 PF02261 Aspartate decarboxylase XCM_9455 PF00342 Phosphoglucose isomerase XCM_9475 PF14310 Fibronectin type III-like domain XCM_9475 PF00933 Glycosyl hydrolase family 3 N terminal domain XCM_9475 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCM_9480 PF00474 Sodium:solute symporter family XCM_9485 PF01590 GAF domain XCM_9485 PF00563 EAL domain XCM_9485 PF00990 Diguanylate cyclase, GGDEF domain XCM_9485 PF00360 Phytochrome region XCM_9490 PF02013 Cellulose or protein binding domain XCM_9490 PF00150 Cellulase (glycosyl hydrolase family 5) XCM_9495 PF00072 Response regulator receiver domain XCM_9510 PF04551 GcpE protein XCM_9515 PF01569 PAP2 superfamily XCM_9520 PF07690 Major Facilitator Superfamily XCM_9525 PF01177 Asp/Glu/Hydantoin racemase XCM_9530 PF00892 EamA-like transporter family XCM_9535 PF01565 FAD binding domain XCM_9535 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XCM_9540 PF01180 Dihydroorotate dehydrogenase XCM_9555 PF00171 Aldehyde dehydrogenase family XCM_9580 PF02796 Helix-turn-helix domain of resolvase XCM_9580 PF00665 Integrase core domain XCM_9585 PF01695 IstB-like ATP binding protein XCM_9595 PF13333 Integrase core domain XCM_9595 PF00665 Integrase core domain XCM_9595 PF13276 HTH-like domain XCM_9600 PF01527 Transposase XCM_9640 PF02534 Type IV secretory system Conjugative DNA transfer XCM_9660 PF00664 ABC transporter transmembrane region XCM_9660 PF03412 Peptidase C39 family XCM_9660 PF00005 ABC transporter XCM_9680 PF00665 Integrase core domain XCM_9680 PF13276 HTH-like domain XCM_9680 PF13333 Integrase core domain XCM_9685 PF01527 Transposase XCM_9705 PF04245 37-kD nucleoid-associated bacterial protein XCM_9725 PF01527 Transposase XCM_9730 PF00665 Integrase core domain XCM_9730 PF13333 Integrase core domain XCM_9730 PF13276 HTH-like domain XCM_9745 PF00535 Glycosyl transferase family 2 XCM_9750 PF01522 Polysaccharide deacetylase XCM_9750 PF14883 Hypothetical glycosyl hydrolase family 13 XCM_9760 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XCM_9760 PF17287 POTRA domain XCM_9760 PF08479 POTRA domain, ShlB-type XCM_9765 PF04829 Pre-toxin domain with VENN motif XCM_9765 PF05860 haemagglutination activity domain XCM_9765 PF13332 Hemagglutinin repeat XCM_9770 PF13018 Extended Signal Peptide of Type V secretion system XCM_9770 PF05594 Haemagluttinin repeat XCM_9770 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain XCM_9770 PF13332 Hemagglutinin repeat XCM_9770 PF05860 haemagglutination activity domain XCM_9780 PF00085 Thioredoxin XCM_9790 PF08264 Anticodon-binding domain of tRNA XCM_9790 PF00133 tRNA synthetases class I (I, L, M and V) XCM_9790 PF13603 Leucyl-tRNA synthetase, Domain 2 XCM_9805 PF01467 Cytidylyltransferase-like XCM_9820 PF02590 Predicted SPOUT methyltransferase XCM_9835 PF04402 Protein of unknown function (DUF541) XCM_9840 PF02545 Maf-like protein XCM_9845 PF10150 Ribonuclease E/G family XCM_9845 PF00575 S1 RNA binding domain XCM_9850 PF13502 AsmA-like C-terminal region XCM_9850 PF13116 Protein of unknown function XCM_9860 PF01523 Putative modulator of DNA gyrase XCM_9865 PF04751 Protein of unknown function (DUF615) XCM_9870 PF01523 Putative modulator of DNA gyrase XCM_9880 PF14521 Lysine-specific metallo-endopeptidase XCM_9885 PF00348 Polyprenyl synthetase XCM_9890 PF02609 Exonuclease VII small subunit XCM_9895 PF01171 PP-loop family XCM_9895 PF09179 TilS substrate binding domain XCM_9895 PF11734 TilS substrate C-terminal domain XCM_9900 PF00245 Alkaline phosphatase XCM_9905 PF00375 Sodium:dicarboxylate symporter family XCM_9910 PF00375 Sodium:dicarboxylate symporter family XCM_9925 PF00877 NlpC/P60 family XCM_9930 PF00877 NlpC/P60 family XCM_9935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCM_9940 PF04235 Protein of unknown function (DUF418) XCM_9945 PF01266 FAD dependent oxidoreductase XCM_9950 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCM_9950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCM_9955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XCM_9970 PF05649 Peptidase family M13 XCM_9970 PF01431 Peptidase family M13 XCM_9975 PF01431 Peptidase family M13 XCM_9975 PF05649 Peptidase family M13