locus-tag	class	description
BEN78_00030	COG2080	2 iron, 2 sulfur cluster binding
BEN78_00035	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BEN78_00040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BEN78_00050	COG2116	formate transmembrane transporter activity
BEN78_00060	COG0583	DNA-binding transcription factor activity
BEN78_00065	COG2249	NAD(P)H dehydrogenase (quinone) activity
BEN78_00130	COG3706	GGDEF domain
BEN78_00135	COG0583	DNA-binding transcription factor activity
BEN78_00150	COG4681	YaeQ
BEN78_00160	COG1012	belongs to the aldehyde dehydrogenase family
BEN78_00170	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BEN78_00175	COG0406	alpha-ribazole phosphatase activity
BEN78_00175	COG0328	RNA-DNA hybrid ribonuclease activity
BEN78_00185	COG0251	oxidation-reduction process
BEN78_00200	COG3287	FIST C domain
BEN78_00200	COG2200	EAL domain
BEN78_00200	COG2199	diguanylate cyclase activity
BEN78_00205	COG1505	serine-type exopeptidase activity
BEN78_00210	COG4771	TonB-dependent receptor
BEN78_00215	COG4771	TonB-dependent receptor
BEN78_00245	COG0330	HflC and HflK could
BEN78_00250	COG0330	HflC and HflK could
BEN78_00255	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BEN78_00260	COG1923	regulation of RNA biosynthetic process
BEN78_00265	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BEN78_00270	COG0531	amino acid
BEN78_00275	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BEN78_00285	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BEN78_00290	COG1534	Rna-binding protein
BEN78_00295	COG3737	Protein of unknown function (DUF498/DUF598)
BEN78_00305	COG1238	metal cluster binding
BEN78_00330	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BEN78_00335	COG0740	serine-type endopeptidase activity
BEN78_00340	COG0544	peptidyl-prolyl cis-trans isomerase activity
BEN78_00360	COG1335	isochorismatase
BEN78_00370	COG3685	Protein conserved in bacteria
BEN78_00390	COG0473	3-isopropylmalate dehydrogenase activity
BEN78_00405	COG4783	chaperone-mediated protein folding
BEN78_00410	COG0745	RESPONSE REGULATOR receiver
BEN78_00420	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BEN78_00430	COG0438	transferase activity, transferring glycosyl groups
BEN78_00435	COG0671	phosphoesterase, PA-phosphatase related
BEN78_00440	COG4452	Inner membrane protein CreD
BEN78_00445	COG2205	protein histidine kinase activity
BEN78_00450	COG0745	RESPONSE REGULATOR receiver
BEN78_00455	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BEN78_00465	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BEN78_00495	COG1393	Belongs to the ArsC family
BEN78_00510	COG0024	Methionine aminopeptidase
BEN78_00575	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BEN78_00580	COG0776	regulation of translation
BEN78_00590	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BEN78_00595	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BEN78_00605	COG2957	Belongs to the agmatine deiminase family
BEN78_00615	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN78_00620	COG1247	-acetyltransferase
BEN78_00630	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN78_00660	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BEN78_00660	COG0316	Belongs to the HesB IscA family
BEN78_00680	COG1530	ribonuclease E activity
BEN78_00695	COG1999	signal sequence binding
BEN78_00700	COG0436	Aminotransferase
BEN78_00780	COG1983	PspC domain protein
BEN78_00800	COG1183	phosphatidylcholine synthase activity
BEN78_00845	COG4585	Histidine kinase
BEN78_00860	COG2894	cell division
BEN78_00865	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BEN78_00880	COG2814	Major facilitator Superfamily
BEN78_00895	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BEN78_00895	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BEN78_00905	COG3685	Protein conserved in bacteria
BEN78_00915	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN78_00925	COG2200	EAL domain
BEN78_00925	COG2199	diguanylate cyclase activity
BEN78_00925	COG2203	Gaf domain
BEN78_00965	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BEN78_00970	COG0750	zinc metalloprotease
BEN78_01015	COG0825	malonyl-CoA metabolic process
BEN78_01020	COG1902	pentaerythritol trinitrate reductase activity
BEN78_01025	COG0037	tRNA processing
BEN78_01030	COG1722	exodeoxyribonuclease VII activity
BEN78_01035	COG0142	geranyltranstransferase activity
BEN78_01055	COG0312	modulator of DNA gyrase
BEN78_01065	COG0312	modulator of DNA gyrase
BEN78_01075	COG1530	ribonuclease E activity
BEN78_01085	COG2968	Membrane
BEN78_01105	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BEN78_01110	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BEN78_01115	COG2137	regulation of response to DNA damage stimulus
BEN78_01120	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BEN78_01135	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BEN78_01140	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BEN78_01145	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BEN78_01155	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BEN78_01180	COG2814	Major facilitator Superfamily
BEN78_01190	COG4771	TonB-dependent receptor
BEN78_01195	COG1609	Transcriptional regulator
BEN78_01225	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN78_01230	COG2311	Membrane
BEN78_01240	COG0791	NLP P60 protein
BEN78_01245	COG0791	NLP P60 protein
BEN78_01265	COG1349	DNA-binding transcription factor activity
BEN78_01270	COG2223	nitrite transmembrane transporter activity
BEN78_01315	COG0714	Associated with various cellular activities
BEN78_01345	COG2186	Transcriptional regulator
BEN78_01365	COG2271	Major facilitator Superfamily
BEN78_01370	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_01400	COG0243	molybdopterin cofactor binding
BEN78_01430	COG2211	Major facilitator Superfamily
BEN78_01445	COG3693	PFAM glycoside hydrolase, family 10
BEN78_01470	COG1187	pseudouridine synthase activity
BEN78_01480	COG3386	PFAM SMP-30 Gluconolaconase
BEN78_01485	COG0702	epimerase
BEN78_01490	COG4977	sequence-specific DNA binding
BEN78_01495	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_01510	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BEN78_01525	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BEN78_01530	COG0642	Histidine kinase
BEN78_01535	COG0745	RESPONSE REGULATOR receiver
BEN78_01540	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN78_01560	COG0246	Mannitol dehydrogenase
BEN78_01570	COG4948	Mandelate Racemase Muconate Lactonizing
BEN78_01580	COG3661	Belongs to the glycosyl hydrolase 67 family
BEN78_01595	COG1070	Carbohydrate kinase
BEN78_01630	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BEN78_01640	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BEN78_01645	COG0742	ribosomal rna small subunit methyltransferase
BEN78_01650	COG0552	protein localization to endoplasmic reticulum
BEN78_01660	COG1194	a g-specific adenine glycosylase
BEN78_01665	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BEN78_01700	COG1960	acyl-CoA dehydrogenase activity
BEN78_01710	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BEN78_01720	COG5507	3-demethylubiquinone-9 3-methyltransferase
BEN78_01745	COG0776	regulation of translation
BEN78_01755	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BEN78_01760	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BEN78_01765	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BEN78_01770	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BEN78_01780	COG1609	Transcriptional regulator
BEN78_01790	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
BEN78_01845	COG0366	Alpha amylase catalytic
BEN78_01855	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_01870	COG3433	isochorismatase activity
BEN78_01870	COG1535	isochorismatase
BEN78_01875	COG1021	2,3-dihydroxybenzoate-AMP ligase
BEN78_01880	COG1169	isochorismate synthase
BEN78_01900	COG2819	hydrolase of the alpha beta superfamily
BEN78_01910	COG4558	Periplasmic binding protein
BEN78_01915	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN78_01920	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
BEN78_01940	COG2835	tetraacyldisaccharide 4'-kinase activity
BEN78_01965	COG2857	Cytochrome c1
BEN78_01970	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BEN78_01975	COG0723	plastoquinol--plastocyanin reductase activity
BEN78_01980	COG0741	lytic transglycosylase activity
BEN78_01990	COG0842	Transport permease protein
BEN78_01990	COG1129	ABC transporter
BEN78_01995	COG0842	Transport permease protein
BEN78_01995	COG1129	ABC transporter
BEN78_02010	COG1702	phosphate starvation-inducible protein PhoH
BEN78_02020	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BEN78_02030	COG4535	Mg2 and Co2 transporter CorC
BEN78_02040	COG1082	Xylose isomerase domain protein TIM barrel
BEN78_02050	COG3932	Exopolysaccharide synthesis, ExoD
BEN78_02055	COG1966	Carbon starvation protein
BEN78_02060	COG2879	small protein
BEN78_02075	COG1506	peptidase
BEN78_02075	COG0823	Involved in the tonB-independent uptake of proteins
BEN78_02085	COG3104	oligopeptide transport
BEN78_02095	COG2194	sulfuric ester hydrolase activity
BEN78_02115	COG0629	single-stranded DNA binding
BEN78_02120	COG0142	geranyltranstransferase activity
BEN78_02145	COG0527	aspartate kinase activity
BEN78_02150	COG0384	phenazine biosynthesis protein PhzF
BEN78_02155	COG1764	response to oxidative stress
BEN78_02170	COG0739	heme binding
BEN78_02200	COG0719	Fe-S assembly protein
BEN78_02205	COG0396	ATPase activity
BEN78_02215	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BEN78_02235	COG4771	TonB-dependent receptor
BEN78_02245	COG1555	photosystem II stabilization
BEN78_02250	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BEN78_02255	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BEN78_02260	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BEN78_02275	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BEN78_02285	COG0330	HflC and HflK could
BEN78_02310	COG0667	Aldo Keto reductase
BEN78_02315	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BEN78_02320	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BEN78_02330	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BEN78_02340	COG1404	Belongs to the peptidase S8 family
BEN78_02345	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BEN78_02350	COG2308	Evidence 4 Homologs of previously reported genes of
BEN78_02370	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BEN78_02390	COG2222	sugar isomerase
BEN78_02405	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BEN78_02415	COG2205	protein histidine kinase activity
BEN78_02420	COG0745	RESPONSE REGULATOR receiver
BEN78_02430	COG0189	ligase activity
BEN78_02450	COG2022	thiamine diphosphate biosynthetic process
BEN78_02455	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BEN78_02480	COG1970	mechanosensitive ion channel activity
BEN78_02495	COG1115	amino acid carrier protein
BEN78_02505	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN78_02525	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BEN78_02530	COG3588	fructose-bisphosphate aldolase
BEN78_02545	COG0126	phosphoglycerate kinase activity
BEN78_02560	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BEN78_02565	COG3047	cAMP biosynthetic process
BEN78_02585	COG0725	ABC transporter, periplasmic molybdate-binding protein
BEN78_02590	COG4149	molybdate abc transporter
BEN78_02595	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BEN78_02610	COG4773	Receptor
BEN78_02625	COG0427	acetyl-CoA hydrolase
BEN78_02630	COG0271	Belongs to the BolA IbaG family
BEN78_02635	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BEN78_02640	COG1301	dicarboxylic acid transport
BEN78_02645	COG0514	ATP-dependent DNA helicase (RecQ)
BEN78_02665	COG2885	chlorophyll binding
BEN78_02665	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BEN78_02675	COG1201	RNA secondary structure unwinding
BEN78_02695	COG0602	queuosine metabolic process
BEN78_02705	COG2885	chlorophyll binding
BEN78_02725	COG0848	biopolymer transport protein
BEN78_02735	COG0824	Thioesterase
BEN78_02740	COG2255	four-way junction helicase activity
BEN78_02745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BEN78_02780	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BEN78_02785	COG3706	GGDEF domain
BEN78_02785	COG0745	RESPONSE REGULATOR receiver
BEN78_02795	COG0632	four-way junction helicase activity
BEN78_02800	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BEN78_02820	COG1764	response to oxidative stress
BEN78_02830	COG3005	denitrification pathway
BEN78_02840	COG0243	molybdopterin cofactor binding
BEN78_02860	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BEN78_02885	COG0488	(ABC) transporter
BEN78_02895	COG4651	solute:proton antiporter activity
BEN78_02895	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BEN78_02900	COG1090	epimerase
BEN78_02905	COG0542	response to heat
BEN78_02920	COG3387	PFAM Glycoside hydrolase 15-related
BEN78_02925	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
BEN78_02965	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN78_02985	COG4774	siderophore transport
BEN78_03010	COG0463	Glycosyl transferase, family 2
BEN78_03015	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BEN78_03015	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BEN78_03020	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BEN78_03025	COG0242	peptide deformylase activity
BEN78_03030	COG1652	LysM domain
BEN78_03035	COG0758	DNA mediated transformation
BEN78_03040	COG2922	Belongs to the Smg family
BEN78_03050	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BEN78_03050	COG1754	DNA topoisomerase type I activity
BEN78_03055	COG0009	L-threonylcarbamoyladenylate synthase
BEN78_03060	COG0070	glutamate synthase
BEN78_03060	COG0067	glutamate synthase
BEN78_03060	COG0069	glutamate synthase activity
BEN78_03065	COG0493	'glutamate synthase
BEN78_03085	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_03090	COG2755	lipolytic protein G-D-S-L family
BEN78_03100	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_03105	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BEN78_03110	COG1609	Transcriptional regulator
BEN78_03115	COG3507	Belongs to the glycosyl hydrolase 43 family
BEN78_03135	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BEN78_03170	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BEN78_03175	COG0616	signal peptide processing
BEN78_03180	COG0534	Mate efflux family protein
BEN78_03210	COG0456	acetyltransferase
BEN78_03220	COG1183	phosphatidylcholine synthase activity
BEN78_03245	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BEN78_03255	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BEN78_03255	COG3218	ABC-type transport auxiliary lipoprotein component
BEN78_03280	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BEN78_03325	COG0626	cystathionine gamma-synthase activity
BEN78_03400	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BEN78_03405	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BEN78_03410	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BEN78_03425	COG0730	response to heat
BEN78_03435	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BEN78_03465	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BEN78_03470	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BEN78_03475	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BEN78_03480	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BEN78_03495	COG2111	Na H antiporter
BEN78_03495	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BEN78_03500	COG1006	Multisubunit Na H antiporter MnhC subunit
BEN78_03505	COG0651	ATP synthesis coupled electron transport
BEN78_03510	COG1863	multisubunit Na H antiporter MnhE subunit
BEN78_03515	COG2212	antiporter activity
BEN78_03520	COG1320	monovalent cation:proton antiporter activity
BEN78_03530	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BEN78_03545	COG3104	oligopeptide transport
BEN78_03570	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
BEN78_03580	COG3483	tryptophan 2,3-dioxygenase activity
BEN78_03615	COG0180	Tryptophanyl-tRNA synthetase
BEN78_03620	COG3237	CsbD-like
BEN78_03655	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BEN78_03675	COG2205	protein histidine kinase activity
BEN78_03680	COG0745	RESPONSE REGULATOR receiver
BEN78_03690	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BEN78_03720	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BEN78_03725	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BEN78_03730	COG0297	glycogen (starch) synthase activity
BEN78_03750	COG2264	protein methyltransferase activity
BEN78_03760	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BEN78_03765	COG0138	bifunctional purine biosynthesis protein purh
BEN78_03775	COG0151	Belongs to the GarS family
BEN78_03780	COG1289	transmembrane transporter activity
BEN78_03785	COG1607	acyl-coa hydrolase
BEN78_03790	COG2814	Major facilitator Superfamily
BEN78_03830	COG0784	Response regulator, receiver
BEN78_03830	COG2205	protein histidine kinase activity
BEN78_03830	COG5002	protein histidine kinase activity
BEN78_03845	COG1051	belongs to the nudix hydrolase family
BEN78_03860	COG1505	serine-type exopeptidase activity
BEN78_03890	COG0181	hydroxymethylbilane synthase activity
BEN78_03905	COG2943	transferase activity, transferring hexosyl groups
BEN78_03960	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BEN78_03975	COG1136	(ABC) transporter
BEN78_03985	COG0577	efflux transmembrane transporter activity
BEN78_03990	COG0577	efflux transmembrane transporter activity
BEN78_03990	COG1136	(ABC) transporter
BEN78_03995	COG0577	efflux transmembrane transporter activity
BEN78_03995	COG1136	(ABC) transporter
BEN78_04000	COG0577	efflux transmembrane transporter activity
BEN78_04005	COG0577	efflux transmembrane transporter activity
BEN78_04015	COG0577	efflux transmembrane transporter activity
BEN78_04020	COG2204	response regulator
BEN78_04045	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BEN78_04045	COG2885	chlorophyll binding
BEN78_04050	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BEN78_04065	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BEN78_04070	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BEN78_04075	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BEN78_04080	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BEN78_04085	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BEN78_04090	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BEN78_04100	COG0356	it plays a direct role in the translocation of protons across the membrane
BEN78_04135	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN78_04140	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN78_04145	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN78_04145	COG3153	acetyltransferase
BEN78_04170	COG1064	alcohol dehydrogenase
BEN78_04175	COG1666	GTP binding
BEN78_04205	COG4977	sequence-specific DNA binding
BEN78_04210	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BEN78_04215	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BEN78_04225	COG1187	pseudouridine synthase activity
BEN78_04230	COG2813	Specifically methylates the guanine in position
BEN78_04240	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BEN78_04245	COG4181	ATPase activity
BEN78_04255	COG0739	heme binding
BEN78_04260	COG1376	ErfK ybiS ycfS ynhG family protein
BEN78_04285	COG1690	Belongs to the RtcB family
BEN78_04295	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BEN78_04325	COG0714	Associated with various cellular activities
BEN78_04350	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BEN78_04355	COG1368	sulfuric ester hydrolase activity
BEN78_04365	COG5002	protein histidine kinase activity
BEN78_04370	COG0708	Exodeoxyribonuclease III
BEN78_04390	COG0357	Ribosomal RNA small subunit methyltransferase G
BEN78_04395	COG1192	Involved in chromosome partitioning
BEN78_04535	COG4251	negative regulation of phosphorylation
BEN78_04540	COG0784	Response regulator, receiver
BEN78_04550	COG0280	phosphate acetyltransferase
BEN78_04550	COG0281	malic enzyme
BEN78_04555	COG3746	phosphate-selective porin O and P
BEN78_04575	COG0784	Response regulator, receiver
BEN78_04575	COG2198	Histidine kinase
BEN78_04575	COG2205	protein histidine kinase activity
BEN78_04590	COG3706	GGDEF domain
BEN78_04590	COG0745	RESPONSE REGULATOR receiver
BEN78_04600	COG1162	GTPase activity
BEN78_04605	COG0436	Aminotransferase
BEN78_04680	COG3178	'Phosphotransferase
BEN78_04690	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BEN78_04695	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BEN78_04700	COG1609	Transcriptional regulator
BEN78_04720	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BEN78_04735	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_04740	COG0745	RESPONSE REGULATOR receiver
BEN78_04740	COG3706	GGDEF domain
BEN78_04760	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BEN78_04770	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BEN78_04780	COG0668	transmembrane transport
BEN78_04785	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BEN78_04790	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BEN78_04795	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BEN78_04800	COG1610	YqeY-like protein
BEN78_04805	COG4942	peptidase
BEN78_04810	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BEN78_04825	COG0560	Phosphoserine phosphatase
BEN78_04835	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BEN78_04840	COG0739	heme binding
BEN78_04885	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BEN78_04895	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BEN78_04910	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BEN78_04915	COG3706	GGDEF domain
BEN78_04920	COG2205	protein histidine kinase activity
BEN78_04930	COG2852	Protein conserved in bacteria
BEN78_04935	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BEN78_04970	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN78_04975	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BEN78_05010	COG0297	glycogen (starch) synthase activity
BEN78_05015	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BEN78_05040	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BEN78_05045	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BEN78_05060	COG0793	Belongs to the peptidase S41A family
BEN78_05075	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_05095	COG3214	Protein conserved in bacteria
BEN78_05100	COG1305	Transglutaminase-like
BEN78_05115	COG2267	carboxylic ester hydrolase activity
BEN78_05170	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BEN78_05195	COG2409	Drug exporters of the RND superfamily
BEN78_05215	COG3265	gluconokinase activity
BEN78_05220	COG0546	phosphoglycolate phosphatase activity
BEN78_05230	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BEN78_05235	COG0045	succinate-CoA ligase (ADP-forming) activity
BEN78_05235	COG1042	CoA-binding domain protein
BEN78_05235	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN78_05240	COG1573	uracil-dna glycosylase
BEN78_05245	COG2005	Transcriptional regulator
BEN78_05285	COG1773	rubredoxin
BEN78_05295	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BEN78_05300	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BEN78_05310	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BEN78_05335	COG0586	Pfam SNARE associated Golgi protein
BEN78_05355	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BEN78_05375	COG2814	Major facilitator Superfamily
BEN78_05385	COG1414	Transcriptional regulator
BEN78_05390	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BEN78_05410	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BEN78_05420	COG0210	DNA helicase
BEN78_05425	COG3132	Protein of unknown function, DUF480
BEN78_05430	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BEN78_05520	COG4789	Type iii secretion
BEN78_05535	COG4566	intracellular signal transduction
BEN78_05540	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BEN78_05555	COG4794	Type iii secretion
BEN78_05560	COG4791	protein targeting
BEN78_05565	COG4792	protein secretion
BEN78_05585	COG2937	Belongs to the GPAT DAPAT family
BEN78_05590	COG0515	serine threonine protein kinase
BEN78_05590	COG2815	serine threonine protein kinase
BEN78_05610	COG0488	(ABC) transporter
BEN78_05615	COG0037	tRNA processing
BEN78_05630	COG0596	Alpha beta hydrolase
BEN78_05635	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BEN78_05650	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BEN78_05670	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN78_05670	COG0519	Catalyzes the synthesis of GMP from XMP
BEN78_05690	COG0729	surface antigen
BEN78_05695	COG2911	Protein conserved in bacteria
BEN78_05715	COG2703	oxygen carrier activity
BEN78_05720	COG3279	Response regulator of the LytR AlgR family
BEN78_05730	COG4206	TonB-dependent receptor
BEN78_05740	COG1473	amidohydrolase
BEN78_05745	COG0730	response to heat
BEN78_05750	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BEN78_05790	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BEN78_05805	COG0583	DNA-binding transcription factor activity
BEN78_05810	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN78_05815	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN78_05845	COG1321	iron dependent repressor
BEN78_05855	COG2011	ABC-type metal ion transport system permease component
BEN78_05860	COG1464	Belongs to the NlpA lipoprotein family
BEN78_05885	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
BEN78_05890	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BEN78_05895	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BEN78_05900	COG1074	ATP-dependent DNA helicase activity
BEN78_05915	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN78_05920	COG0640	Transcriptional regulator
BEN78_05935	COG0789	Transcriptional regulator
BEN78_05965	COG0745	RESPONSE REGULATOR receiver
BEN78_05980	COG3122	Protein conserved in bacteria
BEN78_06030	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN78_06035	COG4221	oxidoreductase activity
BEN78_06070	COG1047	Peptidyl-prolyl cis-trans
BEN78_06075	COG0513	Belongs to the DEAD box helicase family
BEN78_06085	COG3668	Plasmid stabilization system
BEN78_06090	COG0754	glutathionylspermidine amidase activity
BEN78_06125	COG0302	gtp cyclohydrolase
BEN78_06135	COG0018	arginyl-trna synthetase
BEN78_06145	COG3318	Belongs to the UPF0149 family
BEN78_06145	COG3012	SEC-C Motif Domain Protein
BEN78_06150	COG4221	oxidoreductase activity
BEN78_06155	COG1166	arginine decarboxylase activity
BEN78_06185	COG0347	Belongs to the P(II) protein family
BEN78_06195	COG0606	chelatase, subunit chli
BEN78_06235	COG3023	N-Acetylmuramoyl-L-alanine amidase
BEN78_06250	COG1404	Belongs to the peptidase S8 family
BEN78_06265	COG0745	RESPONSE REGULATOR receiver
BEN78_06270	COG0004	ammonium transporteR
BEN78_06275	COG0347	Belongs to the P(II) protein family
BEN78_06285	COG0174	glutamine synthetase
BEN78_06290	COG1522	sequence-specific DNA binding
BEN78_06295	COG3186	Phenylalanine-4-hydroxylase
BEN78_06300	COG4772	TonB-dependent receptor
BEN78_06310	COG2197	response regulator
BEN78_06315	COG4585	Histidine kinase
BEN78_06325	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
BEN78_06350	COG0784	Response regulator, receiver
BEN78_06355	COG0643	Histidine kinase
BEN78_06355	COG2198	Histidine kinase
BEN78_06370	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN78_06385	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BEN78_06415	COG0501	Belongs to the peptidase M48B family
BEN78_06420	COG0187	DNA topoisomerase II activity
BEN78_06425	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BEN78_06430	COG0592	DNA-directed DNA polymerase activity
BEN78_06440	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BEN78_06450	COG0706	membrane insertase activity
BEN78_06470	COG4555	ABC transporter
BEN78_06500	COG1131	(ABC) transporter
BEN78_06505	COG0842	Transport permease protein
BEN78_06510	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BEN78_06515	COG0612	Peptidase, M16
BEN78_06540	COG0339	signal peptide processing
BEN78_06620	COG2239	Acts as a magnesium transporter
BEN78_06645	COG4771	TonB-dependent receptor
BEN78_06650	COG0326	Molecular chaperone. Has ATPase activity
BEN78_06655	COG1538	Outer membrane efflux protein
BEN78_06670	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN78_06680	COG0583	DNA-binding transcription factor activity
BEN78_06685	COG0583	DNA-binding transcription factor activity
BEN78_06690	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BEN78_06710	COG3852	Histidine kinase
BEN78_06715	COG2204	response regulator
BEN78_06725	COG2032	superoxide dismutase activity
BEN78_06750	COG1587	Uroporphyrinogen-III synthase
BEN78_06765	COG0596	Alpha beta hydrolase
BEN78_06780	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BEN78_06790	COG0612	Peptidase, M16
BEN78_06795	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_06800	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BEN78_06820	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BEN78_06825	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BEN78_06830	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN78_06840	COG0318	PFAM AMP-dependent synthetase and ligase
BEN78_06855	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BEN78_06875	COG1741	Belongs to the pirin family
BEN78_06880	COG0084	hydrolase, TatD family'
BEN78_06885	COG2356	endonuclease I
BEN78_06890	COG1643	Atp-dependent helicase
BEN78_06900	COG1752	Esterase of the alpha-beta hydrolase superfamily
BEN78_06905	COG1793	dna ligase
BEN78_06925	COG2003	Belongs to the UPF0758 family
BEN78_06930	COG3012	SEC-C Motif Domain Protein
BEN78_06935	COG2951	lytic endotransglycosylase activity
BEN78_06970	COG1127	ABC transporter
BEN78_06975	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BEN78_06980	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BEN78_06995	COG2853	Lipoprotein
BEN78_07000	COG0386	Belongs to the glutathione peroxidase family
BEN78_07005	COG1322	Protein conserved in bacteria
BEN78_07035	COG4946	Tricorn protease homolog
BEN78_07035	COG1506	peptidase
BEN78_07035	COG0823	Involved in the tonB-independent uptake of proteins
BEN78_07050	COG0154	amidase activity
BEN78_07055	COG4771	TonB-dependent receptor
BEN78_07060	COG1522	sequence-specific DNA binding
BEN78_07070	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BEN78_07095	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BEN78_07105	COG3591	Belongs to the peptidase S1B family
BEN78_07125	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BEN78_07150	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BEN78_07155	COG0156	8-amino-7-oxononanoate synthase activity
BEN78_07160	COG0697	spore germination
BEN78_07165	COG2267	carboxylic ester hydrolase activity
BEN78_07240	COG1174	glycine betaine transport
BEN78_07245	COG1125	glycine betaine transport
BEN78_07255	COG0745	RESPONSE REGULATOR receiver
BEN78_07255	COG3706	GGDEF domain
BEN78_07260	COG1187	pseudouridine synthase activity
BEN78_07295	COG1794	racemase activity, acting on amino acids and derivatives
BEN78_07305	COG0537	adenosine 5'-monophosphoramidase activity
BEN78_07320	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BEN78_07320	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BEN78_07330	COG1473	amidohydrolase
BEN78_07335	COG1473	amidohydrolase
BEN78_07345	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BEN78_07350	COG0583	DNA-binding transcription factor activity
BEN78_07360	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BEN78_07365	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BEN78_07380	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BEN78_07400	COG0583	DNA-binding transcription factor activity
BEN78_07405	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BEN78_07410	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BEN78_07415	COG3712	iron ion homeostasis
BEN78_07420	COG1595	DNA-templated transcription, initiation
BEN78_07445	COG3800	Transcriptional regulator
BEN78_07445	COG1396	sequence-specific DNA binding
BEN78_07450	COG3800	Transcriptional regulator
BEN78_07450	COG1396	sequence-specific DNA binding
BEN78_07460	COG1960	acyl-CoA dehydrogenase activity
BEN78_07465	COG1024	Enoyl-CoA hydratase
BEN78_07470	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BEN78_07485	COG0793	Belongs to the peptidase S41A family
BEN78_07485	COG4946	Tricorn protease homolog
BEN78_07490	COG0405	Gamma-glutamyltransferase
BEN78_07540	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN78_07545	COG2050	protein possibly involved in aromatic compounds catabolism
BEN78_07565	COG1881	PFAM PEBP family protein
BEN78_07575	COG1968	undecaprenyl-diphosphatase activity
BEN78_07595	COG0708	Exodeoxyribonuclease III
BEN78_07600	COG2211	Major facilitator Superfamily
BEN78_07615	COG0358	DNA primase activity
BEN78_07630	COG1295	ribonuclease BN
BEN78_07635	COG1199	ATP-dependent helicase activity
BEN78_07650	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_07660	COG3384	dioxygenase
BEN78_07690	COG2814	Major facilitator Superfamily
BEN78_07720	COG0667	Aldo Keto reductase
BEN78_07745	COG5002	protein histidine kinase activity
BEN78_07745	COG5001	Diguanylate cyclase
BEN78_07745	COG3447	MASE1 domain protein
BEN78_07760	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BEN78_07775	COG1573	uracil-dna glycosylase
BEN78_07785	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN78_07815	COG0025	NhaP-type Na H and K H
BEN78_07835	COG1404	Belongs to the peptidase S8 family
BEN78_07870	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BEN78_07895	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_07915	COG0463	Glycosyl transferase, family 2
BEN78_07925	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BEN78_07965	COG1472	Belongs to the glycosyl hydrolase 3 family
BEN78_07970	COG1609	Transcriptional regulator
BEN78_07995	COG4771	TonB-dependent receptor
BEN78_08020	COG3537	Alpha-1,2-mannosidase
BEN78_08030	COG0210	DNA helicase
BEN78_08035	COG0589	response to stress
BEN78_08050	COG0673	inositol 2-dehydrogenase activity
BEN78_08075	COG0564	pseudouridine synthase activity
BEN78_08080	COG0408	coproporphyrinogen oxidase activity
BEN78_08090	COG0823	Involved in the tonB-independent uptake of proteins
BEN78_08090	COG1506	peptidase
BEN78_08090	COG4946	Tricorn protease homolog
BEN78_08095	COG1271	oxidase subunit
BEN78_08100	COG1294	oxidase, subunit
BEN78_08105	COG3100	YcgL domain-containing protein
BEN78_08120	COG5642	Protein of unknown function (DUF2384)
BEN78_08140	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN78_08145	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BEN78_08150	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BEN78_08160	COG1360	Flagellar Motor Protein
BEN78_08190	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BEN78_08195	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BEN78_08205	COG2205	protein histidine kinase activity
BEN78_08215	COG3321	synthase
BEN78_08215	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_08215	COG0604	alcohol dehydrogenase
BEN78_08225	COG2197	response regulator
BEN78_08270	COG2223	nitrite transmembrane transporter activity
BEN78_08305	COG1304	FMN binding
BEN78_08330	COG1741	Belongs to the pirin family
BEN78_08340	COG0438	transferase activity, transferring glycosyl groups
BEN78_08350	COG1560	Kdo2-lipid A biosynthetic process
BEN78_08355	COG1519	Transferase
BEN78_08360	COG1538	Outer membrane efflux protein
BEN78_08370	COG1309	transcriptional regulator
BEN78_08465	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BEN78_08470	COG0473	3-isopropylmalate dehydrogenase activity
BEN78_08485	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BEN78_08510	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BEN78_08520	COG2823	Periplasmic or secreted lipoprotein
BEN78_08525	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BEN78_08530	COG0083	homoserine kinase activity
BEN78_08550	COG0823	Involved in the tonB-independent uptake of proteins
BEN78_08570	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BEN78_08585	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BEN78_08590	COG1119	ATPase activity
BEN78_08605	COG0477	Major facilitator Superfamily
BEN78_08625	COG0402	S-adenosylhomocysteine deaminase activity
BEN78_08630	COG3964	amidohydrolase
BEN78_08640	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BEN78_08705	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BEN78_08710	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BEN78_08715	COG3118	belongs to the thioredoxin family
BEN78_08725	COG2884	Cell division ATP-binding protein ftsE
BEN78_08730	COG2177	Part of the ABC transporter FtsEX involved in
BEN78_08735	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BEN78_08745	COG0720	synthase
BEN78_08750	COG2832	Protein of unknown function (DUF454)
BEN78_08770	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BEN78_08830	COG1253	flavin adenine dinucleotide binding
BEN78_08835	COG2226	methyltransferase
BEN78_08845	COG0308	aminopeptidase N
BEN78_08865	COG0534	Mate efflux family protein
BEN78_08870	COG3706	GGDEF domain
BEN78_08875	COG0431	NADPH-dependent FMN reductase
BEN78_08890	COG1077	Cell shape determining protein MreB Mrl
BEN78_08895	COG1792	Involved in formation and maintenance of cell shape
BEN78_08905	COG0768	penicillin binding
BEN78_08910	COG0772	Belongs to the SEDS family
BEN78_08915	COG2951	lytic endotransglycosylase activity
BEN78_08925	COG1686	Belongs to the peptidase S11 family
BEN78_08950	COG0793	Belongs to the peptidase S41A family
BEN78_08955	COG0697	spore germination
BEN78_08960	COG2962	Rard protein
BEN78_08980	COG0577	efflux transmembrane transporter activity
BEN78_08980	COG1136	(ABC) transporter
BEN78_08985	COG1136	(ABC) transporter
BEN78_08995	COG1131	(ABC) transporter
BEN78_09000	COG0842	Transport permease protein
BEN78_09005	COG4585	Histidine kinase
BEN78_09010	COG2197	response regulator
BEN78_09020	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BEN78_09050	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN78_09090	COG2094	Belongs to the DNA glycosylase MPG family
BEN78_09095	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN78_09125	COG0741	lytic transglycosylase activity
BEN78_09130	COG2133	pyrroloquinoline quinone binding
BEN78_09160	COG0439	Biotin carboxylase
BEN78_09165	COG0511	ligase activity, forming carbon-carbon bonds
BEN78_09175	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BEN78_09180	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN78_09190	COG1324	tolerance protein
BEN78_09200	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BEN78_09205	COG0459	protein refolding
BEN78_09215	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BEN78_09220	COG2081	HI0933 family
BEN78_09225	COG0723	plastoquinol--plastocyanin reductase activity
BEN78_09225	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN78_09240	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BEN78_09245	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BEN78_09250	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BEN78_09255	COG0428	transporter
BEN78_09275	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BEN78_09295	COG4974	Belongs to the 'phage' integrase family
BEN78_09305	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BEN78_09305	COG0047	phosphoribosylformylglycinamidine synthase activity
BEN78_09320	COG1404	Belongs to the peptidase S8 family
BEN78_09335	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BEN78_09345	COG1459	type II secretion system
BEN78_09365	COG2165	general secretion pathway protein
BEN78_09370	COG4970	Tfp pilus assembly protein FimT
BEN78_09375	COG2165	general secretion pathway protein
BEN78_09380	COG4795	General secretion pathway protein
BEN78_09385	COG3156	type II secretion system protein K
BEN78_09390	COG3166	PFAM Fimbrial assembly family protein
BEN78_09405	COG1450	Type ii and iii secretion system protein
BEN78_09430	COG0284	orotidine-5'-phosphate decarboxylase activity
BEN78_09435	COG0024	Methionine aminopeptidase
BEN78_09440	COG0563	adenylate kinase activity
BEN78_09445	COG0488	(ABC) transporter
BEN78_09450	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BEN78_09460	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN78_09460	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN78_09475	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BEN78_09480	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BEN78_09525	COG2001	Belongs to the MraZ family
BEN78_09530	COG0275	rRNA processing
BEN78_09535	COG3116	cell division
BEN78_09545	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BEN78_09550	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BEN78_09555	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BEN78_09565	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BEN78_09570	COG1181	Belongs to the D-alanine--D-alanine ligase family
BEN78_09575	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BEN78_09600	COG0739	heme binding
BEN78_09605	COG0653	protein targeting
BEN78_09610	COG0494	nUDIX hydrolase
BEN78_09620	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BEN78_09695	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BEN78_09710	COG3852	Histidine kinase
BEN78_09715	COG3706	GGDEF domain
BEN78_09750	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN78_09750	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BEN78_09760	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BEN78_09780	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BEN78_09810	COG0006	proline dipeptidase activity
BEN78_09815	COG0006	proline dipeptidase activity
BEN78_09820	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BEN78_09830	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BEN78_09835	COG1561	YicC-like family, N-terminal region
BEN78_09840	COG4771	TonB-dependent receptor
BEN78_09845	COG0154	amidase activity
BEN78_09850	COG0823	Involved in the tonB-independent uptake of proteins
BEN78_09850	COG1506	peptidase
BEN78_09850	COG4946	Tricorn protease homolog
BEN78_09865	COG0194	GDP metabolic process
BEN78_09870	COG1758	RNA polymerase activity
BEN78_09875	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BEN78_09885	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BEN78_09890	COG2197	response regulator
BEN78_09895	COG5295	Hep Hag repeat protein
BEN78_09915	COG0254	rRNA binding
BEN78_09920	COG0372	Belongs to the citrate synthase family
BEN78_09960	COG0714	Associated with various cellular activities
BEN78_09990	COG1301	dicarboxylic acid transport
BEN78_09995	COG0783	Belongs to the Dps family
BEN78_10000	COG1643	Atp-dependent helicase
BEN78_10015	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BEN78_10030	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BEN78_10040	COG1199	ATP-dependent helicase activity
BEN78_10055	COG2226	methyltransferase
BEN78_10065	COG0189	ligase activity
BEN78_10085	COG0840	transmembrane signaling receptor activity
BEN78_10090	COG0643	Histidine kinase
BEN78_10090	COG2198	Histidine kinase
BEN78_10110	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BEN78_10120	COG0494	nUDIX hydrolase
BEN78_10125	COG1218	3'(2'),5'-bisphosphate nucleotidase
BEN78_10130	COG3956	TIGRFAM MazG family protein
BEN78_10150	COG0642	Histidine kinase
BEN78_10155	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN78_10165	COG0577	efflux transmembrane transporter activity
BEN78_10165	COG1136	(ABC) transporter
BEN78_10170	COG0577	efflux transmembrane transporter activity
BEN78_10170	COG1136	(ABC) transporter
BEN78_10185	COG1388	LysM domain
BEN78_10200	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BEN78_10205	COG0861	Integral membrane protein TerC family
BEN78_10210	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BEN78_10215	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BEN78_10225	COG3738	Protein conserved in bacteria
BEN78_10235	COG2967	ApaG domain
BEN78_10245	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN78_10250	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BEN78_10255	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN78_10265	COG0123	including yeast histone deacetylase and acetoin utilization protein
BEN78_10270	COG2096	Adenosyltransferase
BEN78_10280	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN78_10285	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN78_10295	COG2354	Protein conserved in bacteria
BEN78_10330	COG3706	GGDEF domain
BEN78_10340	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BEN78_10345	COG0583	DNA-binding transcription factor activity
BEN78_10350	COG3634	alkyl hydroperoxide reductase activity
BEN78_10375	COG2824	Alkylphosphonate utilization operon protein PhnA
BEN78_10385	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN78_10385	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN78_10390	COG0778	Nitroreductase
BEN78_10410	COG1595	DNA-templated transcription, initiation
BEN78_10415	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BEN78_10425	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BEN78_10430	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BEN78_10465	COG2151	metal-sulfur cluster biosynthetic enzyme
BEN78_10470	COG1404	Belongs to the peptidase S8 family
BEN78_10485	COG0252	asparaginase activity
BEN78_10500	COG1295	ribonuclease BN
BEN78_10505	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN78_10515	COG1704	LemA family
BEN78_10520	COG0501	Belongs to the peptidase M48B family
BEN78_10540	COG1960	acyl-CoA dehydrogenase activity
BEN78_10545	COG1309	transcriptional regulator
BEN78_10570	COG0463	Glycosyl transferase, family 2
BEN78_10580	COG1272	protein, Hemolysin III
BEN78_10590	COG0739	heme binding
BEN78_10595	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BEN78_10600	COG0626	cystathionine gamma-synthase activity
BEN78_10605	COG0460	homoserine dehydrogenase
BEN78_10605	COG0527	aspartate kinase activity
BEN78_10615	COG1487	ribonuclease activity
BEN78_10625	COG1760	l-serine dehydratase
BEN78_10650	COG1793	dna ligase
BEN78_10650	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BEN78_10655	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BEN78_10655	COG1793	dna ligase
BEN78_10660	COG1201	RNA secondary structure unwinding
BEN78_10680	COG2255	four-way junction helicase activity
BEN78_10695	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BEN78_10720	COG0259	pyridoxamine-phosphate oxidase activity
BEN78_10725	COG2910	NAD(P)H-binding
BEN78_10750	COG0501	Belongs to the peptidase M48B family
BEN78_10765	COG0519	Catalyzes the synthesis of GMP from XMP
BEN78_10770	COG1047	Peptidyl-prolyl cis-trans
BEN78_10785	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BEN78_10790	COG0540	Belongs to the ATCase OTCase family
BEN78_10795	COG1113	amino acid transport
BEN78_10810	COG2239	Acts as a magnesium transporter
BEN78_10815	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BEN78_10820	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN78_10840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN78_10855	COG1137	ATPase activity
BEN78_10870	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BEN78_10875	COG0517	IMP dehydrogenase activity
BEN78_10875	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BEN78_10880	COG0271	Belongs to the BolA IbaG family
BEN78_10905	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BEN78_10915	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BEN78_10925	COG0628	permease
BEN78_10930	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BEN78_10935	COG0521	Mo-molybdopterin cofactor biosynthetic process
BEN78_10940	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BEN78_10960	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BEN78_10970	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BEN78_10980	COG0193	aminoacyl-tRNA hydrolase activity
BEN78_10985	COG0012	GTP binding
BEN78_10990	COG1446	asparaginase
BEN78_11010	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BEN78_11020	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BEN78_11025	COG0250	Participates in transcription elongation, termination and antitermination
BEN78_11030	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BEN78_11045	COG0222	ribosome binding
BEN78_11055	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BEN78_11060	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BEN78_11065	COG0049	tRNA binding
BEN78_11070	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BEN78_11075	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BEN78_11080	COG0051	transcription antitermination factor activity, RNA binding
BEN78_11085	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BEN78_11090	COG0088	Forms part of the polypeptide exit tunnel
BEN78_11095	COG0089	rRNA binding
BEN78_11100	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BEN78_11105	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BEN78_11110	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BEN78_11115	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BEN78_11125	COG0255	Belongs to the universal ribosomal protein uL29 family
BEN78_11130	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BEN78_11135	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BEN78_11140	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BEN78_11145	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BEN78_11150	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BEN78_11155	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BEN78_11160	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BEN78_11165	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BEN78_11170	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BEN78_11175	COG1841	ribosomal large subunit assembly
BEN78_11180	COG0200	Binds to the 23S rRNA
BEN78_11190	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BEN78_11195	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BEN78_11200	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BEN78_11205	COG0202	RNA polymerase activity
BEN78_11210	COG0203	ribosomal protein L17
BEN78_11215	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BEN78_11220	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BEN78_11240	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BEN78_11255	COG0039	L-malate dehydrogenase activity
BEN78_11260	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BEN78_11265	COG0372	Belongs to the citrate synthase family
BEN78_11295	COG0625	glutathione transferase activity
BEN78_11305	COG1902	pentaerythritol trinitrate reductase activity
BEN78_11305	COG0446	pyridine nucleotide-disulphide oxidoreductase
BEN78_11310	COG0604	alcohol dehydrogenase
BEN78_11315	COG0667	Aldo Keto reductase
BEN78_11325	COG0583	DNA-binding transcription factor activity
BEN78_11330	COG2885	chlorophyll binding
BEN78_11345	COG0156	8-amino-7-oxononanoate synthase activity
BEN78_11370	COG0588	phosphoglycerate mutase activity
BEN78_11375	COG0285	dihydrofolate synthase activity
BEN78_11390	COG2833	Protein of unknown function (DUF455)
BEN78_11410	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BEN78_11415	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BEN78_11420	COG0735	belongs to the Fur family
BEN78_11425	COG4771	TonB-dependent receptor
BEN78_11445	COG1228	amidohydrolase
BEN78_11455	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN78_11500	COG0477	Major facilitator Superfamily
BEN78_11510	COG1285	pathogenesis
BEN78_11540	COG0693	protein deglycase activity
BEN78_11545	COG1111	helicase
BEN78_11545	COG1205	dead DEAH box helicase
BEN78_11555	COG0531	amino acid
BEN78_11560	COG2264	protein methyltransferase activity
BEN78_11575	COG1132	(ABC) transporter
BEN78_11605	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BEN78_11610	COG2501	S4 domain
BEN78_11615	COG3706	GGDEF domain
BEN78_11625	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BEN78_11630	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BEN78_11640	COG2095	MarC family integral membrane protein
BEN78_11650	COG1611	Belongs to the LOG family
BEN78_11655	COG3275	phosphorelay sensor kinase activity
BEN78_11700	COG0556	nucleotide-excision repair
BEN78_11760	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BEN78_11765	COG1228	amidohydrolase
BEN78_11770	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BEN78_11775	COG1522	sequence-specific DNA binding
BEN78_11790	COG0343	queuine tRNA-ribosyltransferase activity
BEN78_11795	COG1862	Preprotein translocase
BEN78_11800	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BEN78_11805	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BEN78_11825	COG1253	flavin adenine dinucleotide binding
BEN78_11835	COG0306	phosphate transporter
BEN78_11855	COG3590	peptidase
BEN78_11860	COG0475	glutathione-regulated potassium exporter activity
BEN78_11860	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BEN78_11870	COG0513	Belongs to the DEAD box helicase family
BEN78_11905	COG0745	RESPONSE REGULATOR receiver
BEN78_11920	COG1404	Belongs to the peptidase S8 family
BEN78_11925	COG1301	dicarboxylic acid transport
BEN78_11930	COG0612	Peptidase, M16
BEN78_11960	COG3118	belongs to the thioredoxin family
BEN78_11975	COG3706	GGDEF domain
BEN78_11975	COG0745	RESPONSE REGULATOR receiver
BEN78_11980	COG0495	leucyl-tRNA aminoacylation
BEN78_11995	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BEN78_12005	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BEN78_12010	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BEN78_12020	COG0351	phosphomethylpyrimidine kinase
BEN78_12020	COG0352	thiamine-phosphate diphosphorylase activity
BEN78_12035	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BEN78_12040	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BEN78_12050	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BEN78_12060	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BEN78_12070	COG0617	tRNA 3'-terminal CCA addition
BEN78_12080	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BEN78_12085	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BEN78_12090	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BEN78_12095	COG0166	Belongs to the GPI family
BEN78_12100	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BEN78_12105	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BEN78_12105	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BEN78_12110	COG0802	atpase or kinase
BEN78_12115	COG0860	N-Acetylmuramoyl-L-alanine amidase
BEN78_12120	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BEN78_12135	COG1301	dicarboxylic acid transport
BEN78_12140	COG0367	asparagine synthase
BEN78_12195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BEN78_12235	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BEN78_12250	COG1408	metallophosphoesterase
BEN78_12255	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BEN78_12260	COG0704	Plays a role in the regulation of phosphate uptake
BEN78_12270	COG0581	inorganic phosphate transmembrane transporter activity
BEN78_12275	COG0573	inorganic phosphate transmembrane transporter activity
BEN78_12280	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BEN78_12300	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BEN78_12310	COG1024	Enoyl-CoA hydratase
BEN78_12335	COG0824	Thioesterase
BEN78_12340	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BEN78_12345	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BEN78_12350	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BEN78_12360	COG0268	Binds directly to 16S ribosomal RNA
BEN78_12365	COG0728	peptidoglycan biosynthetic process
BEN78_12370	COG0196	riboflavin kinase activity
BEN78_12385	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BEN78_12415	COG3706	GGDEF domain
BEN78_12435	COG1566	PFAM secretion protein HlyD family protein
BEN78_12445	COG1846	Transcriptional regulator
BEN78_12455	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BEN78_12460	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BEN78_12465	COG2070	2-Nitropropane dioxygenase
BEN78_12485	COG0336	Belongs to the RNA methyltransferase TrmD family
BEN78_12530	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BEN78_12535	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BEN78_12540	COG1858	cytochrome C peroxidase
BEN78_12550	COG1546	Belongs to the CinA family
BEN78_12555	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BEN78_12560	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN78_12560	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN78_12575	COG0489	protein tyrosine kinase activity
BEN78_12580	COG4771	TonB-dependent receptor
BEN78_12585	COG0717	Belongs to the dCTP deaminase family
BEN78_12600	COG0412	Dienelactone hydrolase
BEN78_12620	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN78_12625	COG0433	COG0433 Predicted ATPase
BEN78_12635	COG0741	lytic transglycosylase activity
BEN78_12640	COG0688	phosphatidylethanolamine metabolic process
BEN78_12645	COG1999	signal sequence binding
BEN78_12650	COG2890	protein-(glutamine-N5) methyltransferase activity
BEN78_12660	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BEN78_12665	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BEN78_12670	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BEN78_12680	COG0101	tRNA pseudouridine synthase activity
BEN78_12695	COG0133	tryptophan synthase activity
BEN78_12700	COG0159	tryptophan synthase activity
BEN78_12710	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BEN78_12725	COG0149	triose-phosphate isomerase activity
BEN78_12740	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN78_12745	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN78_12750	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN78_12755	COG0649	NAD binding
BEN78_12760	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BEN78_12765	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BEN78_12775	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BEN78_12780	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN78_12790	COG0713	ATP synthesis coupled electron transport
BEN78_12805	COG1007	ATP synthesis coupled electron transport
BEN78_12840	COG0779	Required for maturation of 30S ribosomal subunits
BEN78_12845	COG0195	Participates in both transcription termination and antitermination
BEN78_12855	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BEN78_12860	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BEN78_12865	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BEN78_12870	COG1185	polyribonucleotide nucleotidyltransferase activity
BEN78_12895	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BEN78_12905	COG1595	DNA-templated transcription, initiation
BEN78_12915	COG1946	Acyl-CoA thioesterase
BEN78_12935	COG0300	oxidoreductase activity
BEN78_12945	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BEN78_12945	COG0116	Belongs to the methyltransferase superfamily
BEN78_12950	COG1741	Belongs to the pirin family
BEN78_12965	COG3942	CHAP domain
BEN78_12965	COG1388	LysM domain
BEN78_12975	COG2333	competence protein COMEC
BEN78_12975	COG0658	competence protein
BEN78_12980	COG0811	peptide transport
BEN78_12985	COG0848	biopolymer transport protein
BEN78_12995	COG1663	tetraacyldisaccharide 4'-kinase activity
BEN78_13000	COG0069	glutamate synthase activity
BEN78_13015	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BEN78_13025	COG0322	excinuclease ABC activity
BEN78_13055	COG3706	GGDEF domain
BEN78_13075	COG4948	Mandelate Racemase Muconate Lactonizing
BEN78_13085	COG4771	TonB-dependent receptor
BEN78_13115	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN78_13120	COG3942	CHAP domain
BEN78_13120	COG1388	LysM domain
BEN78_13140	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BEN78_13180	COG0859	PFAM glycosyl transferase family 9
BEN78_13185	COG3642	lipopolysaccharide core region biosynthetic process
BEN78_13190	COG1234	tRNA 3'-trailer cleavage
BEN78_13205	COG0315	cyclic pyranopterin monophosphate synthase activity
BEN78_13225	COG1063	alcohol dehydrogenase
BEN78_13255	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
BEN78_13255	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
BEN78_13265	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BEN78_13270	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BEN78_13280	COG0537	adenosine 5'-monophosphoramidase activity
BEN78_13300	COG0714	Associated with various cellular activities
BEN78_13315	COG1187	pseudouridine synthase activity
BEN78_13320	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BEN78_13355	COG0395	ABC-type sugar transport system, permease component
BEN78_13380	COG4263	nitrous-oxide reductase activity
BEN78_13425	COG0800	Aldolase
BEN78_13440	COG0837	glucose binding
BEN78_13445	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BEN78_13460	COG3115	cell septum assembly
BEN78_13465	COG0346	lactoylglutathione lyase activity
BEN78_13475	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BEN78_13520	COG0678	peroxiredoxin activity
BEN78_13525	COG0071	Belongs to the small heat shock protein (HSP20) family
BEN78_13560	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN78_13565	COG0567	Dehydrogenase, E1 component
BEN78_13575	COG2850	peptidyl-arginine hydroxylation
BEN78_13620	COG1131	(ABC) transporter
BEN78_13625	COG1725	Transcriptional regulator
BEN78_13635	COG0386	Belongs to the glutathione peroxidase family
BEN78_13640	COG0545	Peptidyl-prolyl cis-trans isomerase
BEN78_13650	COG2900	Belongs to the SlyX family
BEN78_13690	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BEN78_13695	COG0277	FAD linked oxidase domain protein
BEN78_13710	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BEN78_13730	COG1918	ferrous iron import across plasma membrane
BEN78_13730	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
BEN78_13765	COG0183	Belongs to the thiolase family
BEN78_13780	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN78_13785	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BEN78_13790	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BEN78_13815	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN78_13815	COG1024	Enoyl-CoA hydratase
BEN78_13830	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN78_13835	COG0481	GTPase activity
BEN78_13840	COG0681	Belongs to the peptidase S26 family
BEN78_13865	COG1381	Involved in DNA repair and RecF pathway recombination
BEN78_13895	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BEN78_13900	COG1472	Belongs to the glycosyl hydrolase 3 family
BEN78_13910	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BEN78_13915	COG1278	Cold shock
BEN78_13925	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_13930	COG0277	FAD linked oxidase domain protein
BEN78_13935	COG1304	FMN binding
BEN78_13940	COG2186	Transcriptional regulator
BEN78_13945	COG0583	DNA-binding transcription factor activity
BEN78_13950	COG2249	NAD(P)H dehydrogenase (quinone) activity
BEN78_13960	COG4206	TonB-dependent receptor
BEN78_13970	COG1956	GAF domain-containing protein
BEN78_13980	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN78_13985	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN78_14000	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN78_14010	COG1960	acyl-CoA dehydrogenase activity
BEN78_14015	COG0640	Transcriptional regulator
BEN78_14055	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BEN78_14060	COG0251	oxidation-reduction process
BEN78_14090	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BEN78_14095	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BEN78_14100	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BEN78_14105	COG1605	Chorismate mutase
BEN78_14105	COG0077	Prephenate dehydratase
BEN78_14145	COG1971	Probably functions as a manganese efflux pump
BEN78_14165	COG2205	protein histidine kinase activity
BEN78_14185	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN78_14200	COG1420	regulation of RNA biosynthetic process
BEN78_14205	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BEN78_14210	COG0443	Heat shock 70 kDa protein
BEN78_14215	COG0484	heat shock protein binding
BEN78_14220	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BEN78_14225	COG0505	Belongs to the CarA family
BEN78_14235	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BEN78_14240	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN78_14250	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BEN78_14260	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BEN78_14275	COG0784	Response regulator, receiver
BEN78_14275	COG2198	Histidine kinase
BEN78_14275	COG2205	protein histidine kinase activity
BEN78_14280	COG1024	Enoyl-CoA hydratase
BEN78_14285	COG0318	PFAM AMP-dependent synthetase and ligase
BEN78_14290	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BEN78_14295	COG0583	DNA-binding transcription factor activity
BEN78_14300	COG2828	Protein conserved in bacteria
BEN78_14315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BEN78_14380	COG0835	chemotaxis
BEN78_14385	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
BEN78_14390	COG0840	transmembrane signaling receptor activity
BEN78_14395	COG0840	transmembrane signaling receptor activity
BEN78_14405	COG0745	RESPONSE REGULATOR receiver
BEN78_14415	COG0835	chemotaxis
BEN78_14420	COG1192	Involved in chromosome partitioning
BEN78_14430	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BEN78_14435	COG0643	Histidine kinase
BEN78_14435	COG2198	Histidine kinase
BEN78_14455	COG0455	bacterial-type flagellum organization
BEN78_14480	COG1987	bacterial-type flagellum assembly
BEN78_14545	COG2204	response regulator
BEN78_14550	COG2201	protein-glutamate methylesterase activity
BEN78_14595	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BEN78_14600	COG1256	bacterial-type flagellum assembly
BEN78_14605	COG3951	Flagellar rod assembly protein muramidase FlgJ
BEN78_14605	COG1705	Flagellar rod assembly protein muramidase FlgJ
BEN78_14615	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BEN78_14620	COG4786	Flagellar basal body rod
BEN78_14625	COG4787	bacterial-type flagellum-dependent cell motility
BEN78_14635	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BEN78_14640	COG1558	bacterial-type flagellum-dependent cell motility
BEN78_14650	COG0784	Response regulator, receiver
BEN78_14650	COG0835	chemotaxis
BEN78_14685	COG3300	MHYT domain
BEN78_14685	COG5001	Diguanylate cyclase
BEN78_14700	COG2915	High frequency lysogenization protein hflD homolog
BEN78_14720	COG0542	response to heat
BEN78_14725	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BEN78_14745	COG0492	ferredoxin-NADP+ reductase activity
BEN78_14750	COG1674	ftsk spoiiie
BEN78_14770	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN78_14785	COG2856	Zn peptidase
BEN78_14850	COG3706	GGDEF domain
BEN78_14850	COG5001	Diguanylate cyclase
BEN78_14850	COG4251	negative regulation of phosphorylation
BEN78_14850	COG2203	Gaf domain
BEN78_14880	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BEN78_14885	COG0590	tRNA wobble adenosine to inosine editing
BEN78_14895	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BEN78_14900	COG4948	Mandelate Racemase Muconate Lactonizing
BEN78_14910	COG3104	oligopeptide transport
BEN78_14920	COG4771	TonB-dependent receptor
BEN78_14935	COG3949	Membrane
BEN78_14955	COG2267	carboxylic ester hydrolase activity
BEN78_14960	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BEN78_14965	COG4771	TonB-dependent receptor
BEN78_14970	COG0583	DNA-binding transcription factor activity
BEN78_14980	COG0022	dehydrogenase e1 component
BEN78_14995	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BEN78_15025	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BEN78_15030	COG1960	acyl-CoA dehydrogenase activity
BEN78_15040	COG2814	Major facilitator Superfamily
BEN78_15045	COG1733	regulation of RNA biosynthetic process
BEN78_15065	COG1289	transmembrane transporter activity
BEN78_15075	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BEN78_15080	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BEN78_15090	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN78_15090	COG0519	Catalyzes the synthesis of GMP from XMP
BEN78_15100	COG3135	benzoate transporter
BEN78_15120	COG3550	peptidyl-serine autophosphorylation
BEN78_15140	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BEN78_15155	COG1959	2 iron, 2 sulfur cluster binding
BEN78_15220	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BEN78_15225	COG1205	dead DEAH box helicase
BEN78_15225	COG1111	helicase
BEN78_15230	COG0519	Catalyzes the synthesis of GMP from XMP
BEN78_15230	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN78_15270	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BEN78_15275	COG0303	'Molybdopterin
BEN78_15280	COG0746	molybdenum cofactor guanylyltransferase activity
BEN78_15285	COG1160	GTP binding
BEN78_15295	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN78_15305	COG1426	Protein conserved in bacteria
BEN78_15315	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BEN78_15320	COG0105	UTP biosynthetic process
BEN78_15330	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN78_15330	COG1024	Enoyl-CoA hydratase
BEN78_15335	COG0183	Belongs to the thiolase family
BEN78_15340	COG2885	chlorophyll binding
BEN78_15365	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BEN78_15395	COG1469	GTP cyclohydrolase I activity
BEN78_15410	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BEN78_15415	COG0402	S-adenosylhomocysteine deaminase activity
BEN78_15435	COG2200	EAL domain
BEN78_15450	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_15460	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_15470	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BEN78_15495	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BEN78_15510	COG0587	DNA-directed DNA polymerase activity
BEN78_15515	COG1595	DNA-templated transcription, initiation
BEN78_15530	COG1012	belongs to the aldehyde dehydrogenase family
BEN78_15545	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BEN78_15560	COG4591	ABC-type transport system involved in lipoprotein release permease component
BEN78_15570	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BEN78_15575	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BEN78_15580	COG1053	succinate dehydrogenase
BEN78_15585	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BEN78_15600	COG2885	chlorophyll binding
BEN78_15600	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BEN78_15605	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BEN78_15610	COG0625	glutathione transferase activity
BEN78_15625	COG1960	acyl-CoA dehydrogenase activity
BEN78_15640	COG0084	hydrolase, TatD family'
BEN78_15645	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BEN78_15695	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BEN78_15720	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BEN78_15730	COG0386	Belongs to the glutathione peroxidase family
BEN78_15735	COG0339	signal peptide processing
BEN78_15785	COG0305	Participates in initiation and elongation during chromosome replication
BEN78_15790	COG0359	binds to the 23S rRNA
BEN78_15795	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BEN78_15800	COG0360	Binds together with S18 to 16S ribosomal RNA
BEN78_15805	COG0477	Major facilitator Superfamily
BEN78_15815	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BEN78_15820	COG1845	cytochrome c oxidase, subunit III
BEN78_15825	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BEN78_15840	COG0017	Asparaginyl-tRNA synthetase
BEN78_15870	COG0288	reversible hydration of carbon dioxide
BEN78_15875	COG0251	oxidation-reduction process
BEN78_15890	COG3844	kynureninase activity
BEN78_15900	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN78_15905	COG2925	Exonuclease
BEN78_15920	COG0671	phosphoesterase, PA-phosphatase related
BEN78_15925	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BEN78_15935	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BEN78_15945	COG0564	pseudouridine synthase activity
BEN78_15965	COG0189	ligase activity
BEN78_15970	COG0243	molybdopterin cofactor binding
BEN78_16010	COG5487	UPF0391 membrane protein
BEN78_16045	COG2031	fatty acid transporter
BEN78_16050	COG3590	peptidase
BEN78_16065	COG2066	Belongs to the glutaminase family
BEN78_16070	COG0435	Glutathione S-transferase
BEN78_16085	COG2217	Heavy metal translocating P-type atpase
BEN78_16105	COG2010	Cytochrome c
BEN78_16115	COG3278	Belongs to the heme-copper respiratory oxidase family
BEN78_16125	COG0667	Aldo Keto reductase
BEN78_16175	COG2222	sugar isomerase
BEN78_16200	COG1349	DNA-binding transcription factor activity
BEN78_16205	COG1619	proteins homologs of microcin C7 resistance protein MccF
BEN78_16250	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
BEN78_16290	COG3177	Filamentation induced by cAMP protein fic
BEN78_16295	COG1403	HNH endonuclease
BEN78_16325	COG1598	PFAM Uncharacterised protein family UPF0150
BEN78_16340	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_16350	COG1522	sequence-specific DNA binding
BEN78_16355	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN78_16365	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BEN78_16385	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BEN78_16400	COG0519	Catalyzes the synthesis of GMP from XMP
BEN78_16400	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN78_16415	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BEN78_16440	COG0477	Major facilitator Superfamily
BEN78_16450	COG1846	Transcriptional regulator
BEN78_16465	COG1309	transcriptional regulator
BEN78_16485	COG0823	Involved in the tonB-independent uptake of proteins
BEN78_16485	COG1506	peptidase
BEN78_16485	COG4946	Tricorn protease homolog
BEN78_16525	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BEN78_16530	COG2902	Dehydrogenase
BEN78_16535	COG1960	acyl-CoA dehydrogenase activity
BEN78_16540	COG0531	amino acid
BEN78_16545	COG0531	amino acid
BEN78_16555	COG0235	Class ii aldolase
BEN78_16565	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BEN78_16580	COG0028	Belongs to the TPP enzyme family
BEN78_16585	COG1012	belongs to the aldehyde dehydrogenase family
BEN78_16605	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BEN78_16610	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BEN78_16610	COG0131	Imidazoleglycerol-phosphate dehydratase
BEN78_16615	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BEN78_16620	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BEN78_16645	COG2986	histidine ammonia-lyase
BEN78_16655	COG0124	histidyl-tRNA synthetase
BEN78_16665	COG4988	ABC transporter
BEN78_16685	COG0318	PFAM AMP-dependent synthetase and ligase
BEN78_16715	COG0165	Argininosuccinate lyase
BEN78_16720	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BEN78_16725	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BEN78_16730	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BEN78_16735	COG0137	argininosuccinate synthase activity
BEN78_16740	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BEN78_16755	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BEN78_16765	COG1028	Short-chain dehydrogenase reductase Sdr
BEN78_16780	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BEN78_16785	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BEN78_16790	COG1399	metal-binding, possibly nucleic acid-binding protein
BEN78_16850	COG2080	2 iron, 2 sulfur cluster binding
BEN78_16860	COG1529	Aldehyde oxidase and xanthine dehydrogenase