locus-tag class description CAI17_00005 PF01594 AI-2E family transporter CAI17_00010 PF00308 Bacterial dnaA protein CAI17_00015 PF00483 Nucleotidyl transferase CAI17_00020 PF01636 Phosphotransferase enzyme family CAI17_00050 PF00667 FAD binding domain CAI17_00050 PF00175 Oxidoreductase NAD-binding domain CAI17_00050 PF00258 Flavodoxin CAI17_00055 PF02424 ApbE family CAI17_00080 PF13640 2OG-Fe(II) oxygenase superfamily CAI17_00080 PF18331 PKHD-type hydroxylase C-terminal domain CAI17_00085 PF07715 TonB-dependent Receptor Plug Domain CAI17_00085 PF00593 TonB dependent receptor CAI17_00090 PF00355 Rieske [2Fe-2S] domain CAI17_00100 PF00266 Aminotransferase class-V CAI17_00105 PF01458 Uncharacterized protein family (UPF0051) CAI17_00110 PF00005 ABC transporter CAI17_00115 PF01458 Uncharacterized protein family (UPF0051) CAI17_00120 PF02082 Transcriptional regulator CAI17_00130 PF01965 DJ-1/PfpI family CAI17_00150 PF01551 Peptidase family M23 CAI17_00160 PF14748 Pyrroline-5-carboxylate reductase dimerisation CAI17_00160 PF03807 NADP oxidoreductase coenzyme F420-dependent CAI17_00165 PF01168 Alanine racemase, N-terminal domain CAI17_00170 PF00437 Type II/IV secretion system protein CAI17_00175 PF00437 Type II/IV secretion system protein CAI17_00180 PF03211 Pectate lyase CAI17_00190 PF00117 Glutamine amidotransferase class-I CAI17_00190 PF13302 Acetyltransferase (GNAT) domain CAI17_00190 PF00958 GMP synthase C terminal domain CAI17_00190 PF13673 Acetyltransferase (GNAT) domain CAI17_00190 PF03352 Methyladenine glycosylase CAI17_00200 PF02622 Uncharacterized ACR, COG1678 CAI17_00205 PF03652 Holliday junction resolvase CAI17_00210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CAI17_00210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CAI17_00215 PF02566 OsmC-like protein CAI17_00230 PF02567 Phenazine biosynthesis-like protein CAI17_00235 PF01842 ACT domain CAI17_00235 PF00696 Amino acid kinase family CAI17_00250 PF02875 Mur ligase family, glutamate ligase domain CAI17_00250 PF08245 Mur ligase middle domain CAI17_00265 PF00348 Polyprenyl synthetase CAI17_00270 PF00436 Single-strand binding protein family CAI17_00275 PF00563 EAL domain CAI17_00275 PF01590 GAF domain CAI17_00275 PF00990 Diguanylate cyclase, GGDEF domain CAI17_00275 PF00360 Phytochrome region CAI17_00280 PF00107 Zinc-binding dehydrogenase CAI17_00280 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI17_00280 PF14765 Polyketide synthase dehydratase CAI17_00280 PF00550 Phosphopantetheine attachment site CAI17_00280 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_00280 PF00698 Acyl transferase domain CAI17_00280 PF08659 KR domain CAI17_00280 PF16197 Ketoacyl-synthetase C-terminal extension CAI17_00280 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI17_00285 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI17_00285 PF10518 TAT (twin-arginine translocation) pathway signal sequence CAI17_00285 PF01799 [2Fe-2S] binding domain CAI17_00290 PF03450 CO dehydrogenase flavoprotein C-terminal domain CAI17_00290 PF00941 FAD binding domain in molybdopterin dehydrogenase CAI17_00295 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CAI17_00295 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CAI17_00300 PF02625 XdhC and CoxI family CAI17_00300 PF13478 XdhC Rossmann domain CAI17_00350 PF04328 Selenoprotein, putative CAI17_00355 PF13722 5TM C-terminal transporter carbon starvation CstA CAI17_00355 PF02554 Carbon starvation protein CstA CAI17_00360 PF02678 Pirin CAI17_00360 PF05726 Pirin C-terminal cupin domain CAI17_00375 PF05726 Pirin C-terminal cupin domain CAI17_00375 PF02678 Pirin CAI17_00385 PF04493 Endonuclease V CAI17_00390 PF00300 Histidine phosphatase superfamily (branch 1) CAI17_00425 PF01790 Prolipoprotein diacylglyceryl transferase CAI17_00430 PF00303 Thymidylate synthase CAI17_00440 PF00186 Dihydrofolate reductase CAI17_00445 PF00158 Sigma-54 interaction domain CAI17_00450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_00450 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CAI17_00455 PF00005 ABC transporter CAI17_00460 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_00470 PF00296 Luciferase-like monooxygenase CAI17_00475 PF03358 NADPH-dependent FMN reductase CAI17_00495 PF00296 Luciferase-like monooxygenase CAI17_00500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CAI17_00505 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_00515 PF00005 ABC transporter CAI17_00515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CAI17_00520 PF00149 Calcineurin-like phosphoesterase CAI17_00525 PF04379 ApaG domain CAI17_00530 PF00398 Ribosomal RNA adenine dimethylase CAI17_00535 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CAI17_00540 PF00639 PPIC-type PPIASE domain CAI17_00540 PF09312 SurA N-terminal domain CAI17_00545 PF04453 LPS transport system D CAI17_00545 PF03968 OstA-like protein CAI17_00550 PF00850 Histone deacetylase domain CAI17_00555 PF01923 Cobalamin adenosyltransferase CAI17_00570 PF01494 FAD binding domain CAI17_00575 PF01494 FAD binding domain CAI17_00595 PF07729 FCD domain CAI17_00595 PF00392 Bacterial regulatory proteins, gntR family CAI17_00600 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CAI17_00605 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CAI17_00605 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit CAI17_00610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_00610 PF03466 LysR substrate binding domain CAI17_00615 PF00501 AMP-binding enzyme CAI17_00615 PF13193 AMP-binding enzyme C-terminal domain CAI17_00620 PF00171 Aldehyde dehydrogenase family CAI17_00625 PF00378 Enoyl-CoA hydratase/isomerase CAI17_00645 PF08450 SMP-30/Gluconolactonase/LRE-like region CAI17_00650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CAI17_00650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CAI17_00660 PF01728 FtsJ-like methyltransferase CAI17_00660 PF18125 RlmM ferredoxin-like domain CAI17_00680 PF00892 EamA-like transporter family CAI17_00690 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI17_00690 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CAI17_00705 PF00990 Diguanylate cyclase, GGDEF domain CAI17_00705 PF00072 Response regulator receiver domain CAI17_00710 PF00672 HAMP domain CAI17_00710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_00710 PF00512 His Kinase A (phospho-acceptor) domain CAI17_00710 PF01627 Hpt domain CAI17_00710 PF00072 Response regulator receiver domain CAI17_00710 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI17_00725 PF01625 Peptide methionine sulfoxide reductase CAI17_00735 PF00923 Transaldolase/Fructose-6-phosphate aldolase CAI17_00740 PF14760 Rnk N-terminus CAI17_00740 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI17_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_00750 PF03466 LysR substrate binding domain CAI17_00755 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_00755 PF13192 Thioredoxin domain CAI17_00760 PF00578 AhpC/TSA family CAI17_00760 PF10417 C-terminal domain of 1-Cys peroxiredoxin CAI17_00765 PF17827 PrmC N-terminal domain CAI17_00765 PF05175 Methyltransferase small domain CAI17_00770 PF00561 alpha/beta hydrolase fold CAI17_00780 PF00293 NUDIX domain CAI17_00785 PF00476 DNA polymerase family A CAI17_00785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CAI17_00785 PF01367 5'-3' exonuclease, C-terminal SAM fold CAI17_00785 PF01612 3'-5' exonuclease CAI17_00815 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CAI17_00815 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CAI17_00815 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CAI17_00835 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CAI17_00840 PF02233 NAD(P) transhydrogenase beta subunit CAI17_00855 PF01063 Amino-transferase class IV CAI17_00865 PF04151 Bacterial pre-peptidase C-terminal domain CAI17_00865 PF00082 Subtilase family CAI17_00875 PF00082 Subtilase family CAI17_00875 PF04151 Bacterial pre-peptidase C-terminal domain CAI17_00880 PF04073 Aminoacyl-tRNA editing domain CAI17_00890 PF17189 Glycosyl hydrolase family 30 beta sandwich domain CAI17_00890 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain CAI17_00900 PF03358 NADPH-dependent FMN reductase CAI17_00905 PF03631 Virulence factor BrkB CAI17_00915 PF00708 Acylphosphatase CAI17_00925 PF03976 Polyphosphate kinase 2 (PPK2) CAI17_00945 PF03462 PCRF domain CAI17_00945 PF00472 RF-1 domain CAI17_00950 PF01488 Shikimate / quinate 5-dehydrogenase CAI17_00950 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CAI17_00950 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CAI17_00960 PF03550 Outer membrane lipoprotein LolB CAI17_00965 PF08544 GHMP kinases C terminal CAI17_00965 PF00288 GHMP kinases N terminal domain CAI17_00975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CAI17_00975 PF14572 Phosphoribosyl synthetase-associated domain CAI17_00980 PF14693 Ribosomal protein TL5, C-terminal domain CAI17_00980 PF01386 Ribosomal L25p family CAI17_00985 PF01195 Peptidyl-tRNA hydrolase CAI17_00990 PF06071 Protein of unknown function (DUF933) CAI17_00990 PF01926 50S ribosome-binding GTPase CAI17_01010 PF00009 Elongation factor Tu GTP binding domain CAI17_01010 PF03144 Elongation factor Tu domain 2 CAI17_01010 PF03143 Elongation factor Tu C-terminal domain CAI17_01020 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CAI17_01025 PF00467 KOW motif CAI17_01025 PF02357 Transcription termination factor nusG CAI17_01030 PF03946 Ribosomal protein L11, N-terminal domain CAI17_01030 PF00298 Ribosomal protein L11, RNA binding domain CAI17_01035 PF00687 Ribosomal protein L1p/L10e family CAI17_01040 PF00466 Ribosomal protein L10 CAI17_01045 PF00542 Ribosomal protein L7/L12 C-terminal domain CAI17_01045 PF16320 Ribosomal protein L7/L12 dimerisation domain CAI17_01050 PF00562 RNA polymerase Rpb2, domain 6 CAI17_01050 PF04560 RNA polymerase Rpb2, domain 7 CAI17_01050 PF04563 RNA polymerase beta subunit CAI17_01050 PF10385 RNA polymerase beta subunit external 1 domain CAI17_01050 PF04565 RNA polymerase Rpb2, domain 3 CAI17_01050 PF04561 RNA polymerase Rpb2, domain 2 CAI17_01055 PF04997 RNA polymerase Rpb1, domain 1 CAI17_01055 PF04983 RNA polymerase Rpb1, domain 3 CAI17_01055 PF00623 RNA polymerase Rpb1, domain 2 CAI17_01055 PF04998 RNA polymerase Rpb1, domain 5 CAI17_01055 PF05000 RNA polymerase Rpb1, domain 4 CAI17_01060 PF00164 Ribosomal protein S12/S23 CAI17_01065 PF00177 Ribosomal protein S7p/S5e CAI17_01070 PF03764 Elongation factor G, domain IV CAI17_01070 PF00009 Elongation factor Tu GTP binding domain CAI17_01070 PF03144 Elongation factor Tu domain 2 CAI17_01070 PF00679 Elongation factor G C-terminus CAI17_01070 PF14492 Elongation Factor G, domain II CAI17_01075 PF03143 Elongation factor Tu C-terminal domain CAI17_01075 PF03144 Elongation factor Tu domain 2 CAI17_01075 PF00009 Elongation factor Tu GTP binding domain CAI17_01080 PF00338 Ribosomal protein S10p/S20e CAI17_01085 PF00297 Ribosomal protein L3 CAI17_01090 PF00573 Ribosomal protein L4/L1 family CAI17_01095 PF00276 Ribosomal protein L23 CAI17_01100 PF00181 Ribosomal Proteins L2, RNA binding domain CAI17_01100 PF03947 Ribosomal Proteins L2, C-terminal domain CAI17_01105 PF00203 Ribosomal protein S19 CAI17_01110 PF00237 Ribosomal protein L22p/L17e CAI17_01115 PF00189 Ribosomal protein S3, C-terminal domain CAI17_01115 PF07650 KH domain CAI17_01120 PF00252 Ribosomal protein L16p/L10e CAI17_01125 PF00831 Ribosomal L29 protein CAI17_01130 PF00366 Ribosomal protein S17 CAI17_01135 PF00238 Ribosomal protein L14p/L23e CAI17_01140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CAI17_01140 PF00467 KOW motif CAI17_01145 PF00281 Ribosomal protein L5 CAI17_01145 PF00673 ribosomal L5P family C-terminus CAI17_01150 PF00253 Ribosomal protein S14p/S29e CAI17_01155 PF00410 Ribosomal protein S8 CAI17_01160 PF00347 Ribosomal protein L6 CAI17_01165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CAI17_01170 PF03719 Ribosomal protein S5, C-terminal domain CAI17_01170 PF00333 Ribosomal protein S5, N-terminal domain CAI17_01175 PF00327 Ribosomal protein L30p/L7e CAI17_01180 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CAI17_01185 PF00344 SecY translocase CAI17_01190 PF00416 Ribosomal protein S13/S18 CAI17_01195 PF00411 Ribosomal protein S11 CAI17_01200 PF01479 S4 domain CAI17_01200 PF00163 Ribosomal protein S4/S9 N-terminal domain CAI17_01205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CAI17_01205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CAI17_01205 PF01000 RNA polymerase Rpb3/RpoA insert domain CAI17_01210 PF01196 Ribosomal protein L17 CAI17_01215 PF02600 Disulfide bond formation protein DsbB CAI17_01235 PF01474 Class-II DAHP synthetase family CAI17_01245 PF01425 Amidase CAI17_01260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CAI17_01265 PF00056 lactate/malate dehydrogenase, NAD binding domain CAI17_01265 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CAI17_01275 PF00043 Glutathione S-transferase, C-terminal domain CAI17_01275 PF02798 Glutathione S-transferase, N-terminal domain CAI17_01295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CAI17_01295 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_01310 PF00691 OmpA family CAI17_01310 PF05736 OprF membrane domain CAI17_01320 PF00849 RNA pseudouridylate synthase CAI17_01330 PF00155 Aminotransferase class I and II CAI17_01340 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_01345 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_01350 PF17850 CysA C-terminal regulatory domain CAI17_01350 PF00005 ABC transporter CAI17_01350 PF12857 TOBE-like domain CAI17_01360 PF00107 Zinc-binding dehydrogenase CAI17_01360 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_01390 PF10459 Peptidase S46 CAI17_01395 PF00300 Histidine phosphatase superfamily (branch 1) CAI17_01405 PF02875 Mur ligase family, glutamate ligase domain CAI17_01405 PF08245 Mur ligase middle domain CAI17_01420 PF00156 Phosphoribosyl transferase domain CAI17_01425 PF04305 Protein of unknown function (DUF455) CAI17_01445 PF00149 Calcineurin-like phosphoesterase CAI17_01450 PF01569 PAP2 superfamily CAI17_01455 PF00534 Glycosyl transferases group 1 CAI17_01455 PF13439 Glycosyltransferase Family 4 CAI17_01460 PF02541 Ppx/GppA phosphatase family CAI17_01465 PF13090 Polyphosphate kinase C-terminal domain 2 CAI17_01465 PF17941 Polyphosphate kinase C-terminal domain 1 CAI17_01465 PF13089 Polyphosphate kinase N-terminal domain CAI17_01465 PF02503 Polyphosphate kinase middle domain CAI17_01470 PF00512 His Kinase A (phospho-acceptor) domain CAI17_01470 PF11808 Phosphate regulon sensor protein PhoR CAI17_01470 PF00989 PAS fold CAI17_01470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_01475 PF00486 Transcriptional regulatory protein, C terminal CAI17_01475 PF00072 Response regulator receiver domain CAI17_01480 PF13181 Tetratricopeptide repeat CAI17_01480 PF01435 Peptidase family M48 CAI17_01485 PF00462 Glutaredoxin CAI17_01495 PF00180 Isocitrate/isopropylmalate dehydrogenase CAI17_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_01525 PF00512 His Kinase A (phospho-acceptor) domain CAI17_01525 PF00989 PAS fold CAI17_01535 PF05697 Bacterial trigger factor protein (TF) CAI17_01535 PF05698 Bacterial trigger factor protein (TF) C-terminus CAI17_01540 PF00574 Clp protease CAI17_01545 PF06689 ClpX C4-type zinc finger CAI17_01545 PF07724 AAA domain (Cdc48 subfamily) CAI17_01545 PF10431 C-terminal, D2-small domain, of ClpB protein CAI17_01550 PF02190 ATP-dependent protease La (LON) substrate-binding domain CAI17_01550 PF05362 Lon protease (S16) C-terminal proteolytic domain CAI17_01550 PF00004 ATPase family associated with various cellular activities (AAA) CAI17_01555 PF00216 Bacterial DNA-binding protein CAI17_01575 PF05257 CHAP domain CAI17_01575 PF01476 LysM domain CAI17_01580 PF16123 Hydroxyacylglutathione hydrolase C-terminus CAI17_01580 PF00753 Metallo-beta-lactamase superfamily CAI17_01590 PF00075 RNase H CAI17_01595 PF00929 Exonuclease CAI17_01615 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CAI17_01625 PF00753 Metallo-beta-lactamase superfamily CAI17_01625 PF12706 Beta-lactamase superfamily domain CAI17_01630 PF04055 Radical SAM superfamily CAI17_01630 PF06463 Molybdenum Cofactor Synthesis C CAI17_01635 PF01967 MoaC family CAI17_01640 PF02597 ThiS family CAI17_01645 PF02391 MoaE protein CAI17_01660 PF12170 DNA polymerase III tau subunit V interacting with alpha CAI17_01660 PF12169 DNA polymerase III subunits gamma and tau domain III CAI17_01660 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CAI17_01665 PF02575 YbaB/EbfC DNA-binding family CAI17_01670 PF02132 RecR protein CAI17_01670 PF13662 Toprim domain CAI17_01675 PF01230 HIT domain CAI17_01685 PF01841 Transglutaminase-like superfamily CAI17_01685 PF13559 Domain of unknown function (DUF4129) CAI17_01685 PF11992 Domain of unknown function (DUF3488) CAI17_01695 PF17863 AAA lid domain CAI17_01695 PF07726 ATPase family associated with various cellular activities (AAA) CAI17_01725 PF02545 Maf-like protein CAI17_01730 PF02620 Large ribosomal RNA subunit accumulation protein YceD CAI17_01735 PF01783 Ribosomal L32p protein family CAI17_01740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI17_01740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI17_01750 PF00698 Acyl transferase domain CAI17_01760 PF00550 Phosphopantetheine attachment site CAI17_01765 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI17_01765 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI17_01770 PF04715 Anthranilate synthase component I, N terminal region CAI17_01770 PF00425 chorismate binding enzyme CAI17_01775 PF02618 YceG-like family CAI17_01780 PF09115 DNA polymerase III, delta subunit, C terminal CAI17_01800 PF00158 Sigma-54 interaction domain CAI17_01800 PF06506 Propionate catabolism activator CAI17_01800 PF02954 Bacterial regulatory protein, Fis family CAI17_01810 PF00285 Citrate synthase, C-terminal domain CAI17_01815 PF00330 Aconitase family (aconitate hydratase) CAI17_01815 PF00694 Aconitase C-terminal domain CAI17_01820 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CAI17_01835 PF04303 PrpF protein CAI17_01840 PF00593 TonB dependent receptor CAI17_01840 PF07715 TonB-dependent Receptor Plug Domain CAI17_01855 PF07703 Alpha-2-macroglobulin bait region domain CAI17_01855 PF00207 Alpha-2-macroglobulin family CAI17_01855 PF01835 MG2 domain CAI17_01855 PF17962 Bacterial macroglobulin domain 6 CAI17_01855 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CAI17_01855 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CAI17_01855 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CAI17_01855 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CAI17_01875 PF00912 Transglycosylase CAI17_01875 PF06832 Penicillin-Binding Protein C-terminus Family CAI17_01875 PF00905 Penicillin binding protein transpeptidase domain CAI17_01885 PF08534 Redoxin CAI17_01895 PF01556 DnaJ C terminal domain CAI17_01895 PF00226 DnaJ domain CAI17_01900 PF00072 Response regulator receiver domain CAI17_01905 PF01145 SPFH domain / Band 7 family CAI17_01905 PF12221 Bacterial membrane protein N terminal CAI17_01910 PF01145 SPFH domain / Band 7 family CAI17_01920 PF00709 Adenylosuccinate synthetase CAI17_01925 PF01433 Peptidase family M1 domain CAI17_01925 PF11838 ERAP1-like C-terminal domain CAI17_01935 PF00440 Bacterial regulatory proteins, tetR family CAI17_01965 PF01420 Type I restriction modification DNA specificity domain CAI17_01980 PF02384 N-6 DNA Methylase CAI17_01990 PF00271 Helicase conserved C-terminal domain CAI17_01990 PF08463 EcoEI R protein C-terminal CAI17_01990 PF04851 Type III restriction enzyme, res subunit CAI17_01990 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CAI17_02025 PF13456 Reverse transcriptase-like CAI17_02025 PF00300 Histidine phosphatase superfamily (branch 1) CAI17_02030 PF01256 Carbohydrate kinase CAI17_02040 PF00723 Glycosyl hydrolases family 15 CAI17_02055 PF07971 Glycosyl hydrolase family 92 CAI17_02055 PF17678 Glycosyl hydrolase family 92 N-terminal domain CAI17_02060 PF00106 short chain dehydrogenase CAI17_02070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_02090 PF17755 UvrA DNA-binding domain CAI17_02130 PF12833 Helix-turn-helix domain CAI17_02130 PF02311 AraC-like ligand binding domain CAI17_02155 PF06628 Catalase-related immune-responsive CAI17_02155 PF00199 Catalase CAI17_02155 PF18011 C-terminal domain found in long catalases CAI17_02160 PF00248 Aldo/keto reductase family CAI17_02165 PF00135 Carboxylesterase family CAI17_02170 PF02347 Glycine cleavage system P-protein CAI17_02175 PF07690 Major Facilitator Superfamily CAI17_02190 PF00884 Sulfatase CAI17_02190 PF08019 Phosphoethanolamine transferase EptA/EptB CAI17_02205 PF00072 Response regulator receiver domain CAI17_02205 PF00486 Transcriptional regulatory protein, C terminal CAI17_02210 PF08521 Two-component sensor kinase N-terminal CAI17_02210 PF00512 His Kinase A (phospho-acceptor) domain CAI17_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_02220 PF03776 Septum formation topological specificity factor MinE CAI17_02225 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CAI17_02230 PF05209 Septum formation inhibitor MinC, N-terminal domain CAI17_02230 PF03775 Septum formation inhibitor MinC, C-terminal domain CAI17_02245 PF07730 Histidine kinase CAI17_02250 PF00072 Response regulator receiver domain CAI17_02250 PF00196 Bacterial regulatory proteins, luxR family CAI17_02265 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI17_02295 PF02222 ATP-grasp domain CAI17_02305 PF04377 Arginine-tRNA-protein transferase, C terminus CAI17_02305 PF04376 Arginine-tRNA-protein transferase, N terminus CAI17_02345 PF00378 Enoyl-CoA hydratase/isomerase CAI17_02360 PF17755 UvrA DNA-binding domain CAI17_02360 PF00005 ABC transporter CAI17_02360 PF17760 UvrA interaction domain CAI17_02365 PF00829 Ribosomal prokaryotic L21 protein CAI17_02370 PF01016 Ribosomal L27 protein CAI17_02375 PF01018 GTP1/OBG CAI17_02375 PF01926 50S ribosome-binding GTPase CAI17_02380 PF01649 Ribosomal protein S20 CAI17_02385 PF03023 Lipid II flippase MurJ CAI17_02390 PF06574 FAD synthetase CAI17_02390 PF01687 Riboflavin kinase CAI17_02395 PF00133 tRNA synthetases class I (I, L, M and V) CAI17_02395 PF08264 Anticodon-binding domain of tRNA CAI17_02395 PF06827 Zinc finger found in FPG and IleRS CAI17_02400 PF01252 Signal peptidase (SPase) II CAI17_02405 PF02401 LytB protein CAI17_02415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CAI17_02415 PF06481 COX Aromatic Rich Motif CAI17_02420 PF00115 Cytochrome C and Quinol oxidase polypeptide I CAI17_02425 PF00510 Cytochrome c oxidase subunit III CAI17_02430 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CAI17_02440 PF18073 Rubredoxin metal binding domain CAI17_02445 PF05656 Protein of unknown function (DUF805) CAI17_02455 PF12833 Helix-turn-helix domain CAI17_02460 PF00183 Hsp90 protein CAI17_02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_02470 PF01740 STAS domain CAI17_02470 PF08678 Rsbr N terminal CAI17_02475 PF01740 STAS domain CAI17_02480 PF13581 Histidine kinase-like ATPase domain CAI17_02490 PF00512 His Kinase A (phospho-acceptor) domain CAI17_02490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_02490 PF00672 HAMP domain CAI17_02490 PF00072 Response regulator receiver domain CAI17_02490 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI17_02490 PF01627 Hpt domain CAI17_02500 PF04616 Glycosyl hydrolases family 43 CAI17_02500 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI17_02505 PF00593 TonB dependent receptor CAI17_02505 PF07715 TonB-dependent Receptor Plug Domain CAI17_02510 PF00085 Thioredoxin CAI17_02515 PF07237 Protein of unknown function (DUF1428) CAI17_02520 PF13492 GAF domain CAI17_02520 PF13493 Domain of unknown function (DUF4118) CAI17_02520 PF02702 Osmosensitive K+ channel His kinase sensor domain CAI17_02520 PF00512 His Kinase A (phospho-acceptor) domain CAI17_02520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_02525 PF01339 CheB methylesterase CAI17_02530 PF01739 CheR methyltransferase, SAM binding domain CAI17_02530 PF03705 CheR methyltransferase, all-alpha domain CAI17_02535 PF01627 Hpt domain CAI17_02535 PF00072 Response regulator receiver domain CAI17_02535 PF00512 His Kinase A (phospho-acceptor) domain CAI17_02535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI17_02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_02535 PF00672 HAMP domain CAI17_02555 PF00072 Response regulator receiver domain CAI17_02565 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CAI17_02570 PF01263 Aldose 1-epimerase CAI17_02575 PF01578 Cytochrome C assembly protein CAI17_02580 PF02978 Signal peptide binding domain CAI17_02580 PF02881 SRP54-type protein, helical bundle domain CAI17_02580 PF00448 SRP54-type protein, GTPase domain CAI17_02585 PF03060 Nitronate monooxygenase CAI17_02590 PF01063 Amino-transferase class IV CAI17_02595 PF00886 Ribosomal protein S16 CAI17_02600 PF01782 RimM N-terminal domain CAI17_02600 PF05239 PRC-barrel domain CAI17_02605 PF01746 tRNA (Guanine-1)-methyltransferase CAI17_02610 PF01245 Ribosomal protein L19 CAI17_02615 PF01554 MatE CAI17_02630 PF01479 S4 domain CAI17_02635 PF00141 Peroxidase CAI17_02645 PF05190 MutS family domain IV CAI17_02645 PF05192 MutS domain III CAI17_02645 PF05188 MutS domain II CAI17_02645 PF00488 MutS domain V CAI17_02645 PF01624 MutS domain I CAI17_02665 PF07715 TonB-dependent Receptor Plug Domain CAI17_02665 PF00593 TonB dependent receptor CAI17_02670 PF10609 NUBPL iron-transfer P-loop NTPase CAI17_02680 PF00692 dUTPase CAI17_02700 PF01738 Dienelactone hydrolase family CAI17_02885 PF00182 Chitinase class I CAI17_02940 PF01555 DNA methylase CAI17_02955 PF05598 Transposase domain (DUF772) CAI17_02960 PF11798 IMS family HHH motif CAI17_02960 PF13438 Domain of unknown function (DUF4113) CAI17_02960 PF00817 impB/mucB/samB family CAI17_02960 PF11799 impB/mucB/samB family C-terminal domain CAI17_02965 PF00717 Peptidase S24-like CAI17_02975 PF18693 TRAM domain CAI17_02975 PF04055 Radical SAM superfamily CAI17_02975 PF00919 Uncharacterized protein family UPF0004 CAI17_02980 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI17_02980 PF03449 Transcription elongation factor, N-terminal CAI17_03000 PF00293 NUDIX domain CAI17_03005 PF05872 Bacterial protein of unknown function (DUF853) CAI17_03020 PF02666 Phosphatidylserine decarboxylase CAI17_03025 PF02630 SCO1/SenC CAI17_03030 PF05175 Methyltransferase small domain CAI17_03035 PF01264 Chorismate synthase CAI17_03040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CAI17_03040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CAI17_03045 PF01118 Semialdehyde dehydrogenase, NAD binding domain CAI17_03045 PF02774 Semialdehyde dehydrogenase, dimerisation domain CAI17_03065 PF01416 tRNA pseudouridine synthase CAI17_03070 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CAI17_03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_03075 PF03466 LysR substrate binding domain CAI17_03090 PF00290 Tryptophan synthase alpha chain CAI17_03095 PF17848 Acetyl-coA carboxylase zinc finger domain CAI17_03095 PF01039 Carboxyl transferase domain CAI17_03100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI17_03100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI17_03100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI17_03100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI17_03115 PF00563 EAL domain CAI17_03115 PF03707 Bacterial signalling protein N terminal repeat CAI17_03115 PF00990 Diguanylate cyclase, GGDEF domain CAI17_03130 PF00106 short chain dehydrogenase CAI17_03135 PF00121 Triosephosphate isomerase CAI17_03150 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CAI17_03155 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CAI17_03160 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CAI17_03165 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CAI17_03175 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CAI17_03175 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CAI17_03175 PF10531 SLBB domain CAI17_03180 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CAI17_03180 PF00384 Molybdopterin oxidoreductase CAI17_03180 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CAI17_03185 PF00146 NADH dehydrogenase CAI17_03190 PF12838 4Fe-4S dicluster domain CAI17_03195 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CAI17_03200 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CAI17_03205 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI17_03205 PF00361 Proton-conducting membrane transporter CAI17_03210 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CAI17_03210 PF00361 Proton-conducting membrane transporter CAI17_03215 PF00361 Proton-conducting membrane transporter CAI17_03225 PF17384 RimP C-terminal SH3 domain CAI17_03225 PF02576 RimP N-terminal domain CAI17_03230 PF00575 S1 RNA binding domain CAI17_03230 PF08529 NusA N-terminal domain CAI17_03230 PF13184 NusA-like KH domain CAI17_03235 PF08364 Bacterial translation initiation factor IF-2 associated region CAI17_03235 PF04760 Translation initiation factor IF-2, N-terminal region CAI17_03235 PF11987 Translation-initiation factor 2 CAI17_03235 PF00009 Elongation factor Tu GTP binding domain CAI17_03240 PF02033 Ribosome-binding factor A CAI17_03245 PF16198 tRNA pseudouridylate synthase B C-terminal domain CAI17_03245 PF09157 Pseudouridine synthase II TruB, C-terminal CAI17_03245 PF01509 TruB family pseudouridylate synthase (N terminal domain) CAI17_03250 PF00312 Ribosomal protein S15 CAI17_03255 PF00013 KH domain CAI17_03255 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CAI17_03255 PF01138 3' exoribonuclease family, domain 1 CAI17_03255 PF03725 3' exoribonuclease family, domain 2 CAI17_03255 PF00575 S1 RNA binding domain CAI17_03265 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CAI17_03265 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CAI17_03275 PF00731 AIR carboxylase CAI17_03280 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CAI17_03280 PF02222 ATP-grasp domain CAI17_03285 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CAI17_03285 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CAI17_03290 PF00462 Glutaredoxin CAI17_03300 PF01914 MarC family integral membrane protein CAI17_03310 PF00593 TonB dependent receptor CAI17_03315 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CAI17_03315 PF11892 Domain of unknown function (DUF3412) CAI17_03315 PF03641 Possible lysine decarboxylase CAI17_03320 PF07963 Prokaryotic N-terminal methylation motif CAI17_03320 PF00114 Pilin (bacterial filament) CAI17_03340 PF05567 Neisseria PilC beta-propeller domain CAI17_03370 PF12344 Ultra-violet resistance protein B CAI17_03370 PF17757 UvrB interaction domain CAI17_03370 PF00271 Helicase conserved C-terminal domain CAI17_03370 PF04851 Type III restriction enzyme, res subunit CAI17_03370 PF02151 UvrB/uvrC motif CAI17_03390 PF02534 Type IV secretory system Conjugative DNA transfer CAI17_03410 PF03743 Bacterial conjugation TrbI-like protein CAI17_03430 PF01464 Transglycosylase SLT domain CAI17_03455 PF00356 Bacterial regulatory proteins, lacI family CAI17_03460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CAI17_03460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI17_03460 PF02824 TGS domain CAI17_03460 PF03129 Anticodon binding domain CAI17_03465 PF05198 Translation initiation factor IF-3, N-terminal domain CAI17_03465 PF00707 Translation initiation factor IF-3, C-terminal domain CAI17_03470 PF01632 Ribosomal protein L35 CAI17_03475 PF00453 Ribosomal protein L20 CAI17_03480 PF01409 tRNA synthetases class II core domain (F) CAI17_03480 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CAI17_03485 PF03484 tRNA synthetase B5 domain CAI17_03485 PF03483 B3/4 domain CAI17_03485 PF03147 Ferredoxin-fold anticodon binding domain CAI17_03485 PF01588 Putative tRNA binding domain CAI17_03485 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CAI17_03490 PF00216 Bacterial DNA-binding protein CAI17_03495 PF13411 MerR HTH family regulatory protein CAI17_03515 PF02397 Bacterial sugar transferase CAI17_03535 PF00534 Glycosyl transferases group 1 CAI17_03535 PF13439 Glycosyltransferase Family 4 CAI17_03545 PF14667 Polysaccharide biosynthesis C-terminal domain CAI17_03560 PF03808 Glycosyl transferase WecB/TagA/CpsF family CAI17_03575 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI17_03575 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI17_03580 PF00753 Metallo-beta-lactamase superfamily CAI17_03580 PF16123 Hydroxyacylglutathione hydrolase C-terminus CAI17_03585 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CAI17_03605 PF02779 Transketolase, pyrimidine binding domain CAI17_03605 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CAI17_03605 PF02780 Transketolase, C-terminal domain CAI17_03615 PF02770 Acyl-CoA dehydrogenase, middle domain CAI17_03615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_03615 PF12806 Acetyl-CoA dehydrogenase C-terminal like CAI17_03615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_03630 PF08212 Lipocalin-like domain CAI17_03675 PF13426 PAS domain CAI17_03675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_03675 PF00072 Response regulator receiver domain CAI17_03680 PF04362 Bacterial Fe(2+) trafficking CAI17_03685 PF10576 Iron-sulfur binding domain of endonuclease III CAI17_03685 PF14815 NUDIX domain CAI17_03685 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI17_03685 PF00633 Helix-hairpin-helix motif CAI17_03695 PF00448 SRP54-type protein, GTPase domain CAI17_03695 PF02881 SRP54-type protein, helical bundle domain CAI17_03705 PF05544 Proline racemase CAI17_03710 PF01266 FAD dependent oxidoreductase CAI17_03725 PF00701 Dihydrodipicolinate synthetase family CAI17_03730 PF00171 Aldehyde dehydrogenase family CAI17_03735 PF00557 Metallopeptidase family M24 CAI17_03735 PF01321 Creatinase/Prolidase N-terminal domain CAI17_03750 PF13520 Amino acid permease CAI17_03790 PF00593 TonB dependent receptor CAI17_03790 PF07715 TonB-dependent Receptor Plug Domain CAI17_03800 PF07532 Bacterial Ig-like domain (group 4) CAI17_03865 PF02794 RTX toxin acyltransferase family CAI17_03895 PF01522 Polysaccharide deacetylase CAI17_03895 PF14883 Hypothetical glycosyl hydrolase family 13 CAI17_03905 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CAI17_03905 PF17287 POTRA domain CAI17_03905 PF08479 POTRA domain, ShlB-type CAI17_03955 PF13332 Hemagglutinin repeat CAI17_03955 PF13018 Extended Signal Peptide of Type V secretion system CAI17_03955 PF05594 Haemagluttinin repeat CAI17_03955 PF05860 haemagglutination activity domain CAI17_03955 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CAI17_03965 PF00696 Amino acid kinase family CAI17_03965 PF01842 ACT domain CAI17_03965 PF13840 ACT domain CAI17_03965 PF03447 Homoserine dehydrogenase, NAD binding domain CAI17_03965 PF00742 Homoserine dehydrogenase CAI17_03970 PF00288 GHMP kinases N terminal domain CAI17_03970 PF08544 GHMP kinases C terminal CAI17_03980 PF14821 Threonine synthase N terminus CAI17_03980 PF00291 Pyridoxal-phosphate dependent enzyme CAI17_03990 PF13545 Crp-like helix-turn-helix domain CAI17_03990 PF00027 Cyclic nucleotide-binding domain CAI17_03995 PF13393 Histidyl-tRNA synthetase CAI17_03995 PF03129 Anticodon binding domain CAI17_04005 PF08029 HisG, C-terminal domain CAI17_04005 PF01634 ATP phosphoribosyltransferase CAI17_04010 PF00815 Histidinol dehydrogenase CAI17_04015 PF00155 Aminotransferase class I and II CAI17_04020 PF00475 Imidazoleglycerol-phosphate dehydratase CAI17_04025 PF00117 Glutamine amidotransferase class-I CAI17_04030 PF00977 Histidine biosynthesis protein CAI17_04035 PF00977 Histidine biosynthesis protein CAI17_04040 PF01502 Phosphoribosyl-AMP cyclohydrolase CAI17_04040 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CAI17_04060 PF03079 ARD/ARD' family CAI17_04065 PF00596 Class II Aldolase and Adducin N-terminal domain CAI17_04070 PF13520 Amino acid permease CAI17_04075 PF13520 Amino acid permease CAI17_04085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CAI17_04085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CAI17_04085 PF01842 ACT domain CAI17_04090 PF01565 FAD binding domain CAI17_04090 PF02913 FAD linked oxidases, C-terminal domain CAI17_04110 PF01132 Elongation factor P (EF-P) OB domain CAI17_04110 PF09285 Elongation factor P, C-terminal CAI17_04110 PF08207 Elongation factor P (EF-P) KOW-like domain CAI17_04115 PF00106 short chain dehydrogenase CAI17_04120 PF00682 HMGL-like CAI17_04130 PF00378 Enoyl-CoA hydratase/isomerase CAI17_04140 PF07664 Ferrous iron transport protein B C terminus CAI17_04140 PF07670 Nucleoside recognition CAI17_04140 PF02421 Ferrous iron transport protein B CAI17_04160 PF03475 3-alpha domain CAI17_04160 PF03473 MOSC domain CAI17_04165 PF01113 Dihydrodipicolinate reductase, N-terminus CAI17_04165 PF05173 Dihydrodipicolinate reductase, C-terminus CAI17_04170 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CAI17_04170 PF00117 Glutamine amidotransferase class-I CAI17_04180 PF02142 MGS-like domain CAI17_04180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI17_04180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CAI17_04185 PF03449 Transcription elongation factor, N-terminal CAI17_04185 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI17_04195 PF01368 DHH family CAI17_04195 PF02272 DHHA1 domain CAI17_04195 PF17768 RecJ OB domain CAI17_04245 PF04397 LytTr DNA-binding domain CAI17_04245 PF00072 Response regulator receiver domain CAI17_04255 PF01336 OB-fold nucleic acid binding domain CAI17_04255 PF00152 tRNA synthetases class II (D, K and N) CAI17_04260 PF00072 Response regulator receiver domain CAI17_04265 PF01627 Hpt domain CAI17_04265 PF00512 His Kinase A (phospho-acceptor) domain CAI17_04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_04265 PF00072 Response regulator receiver domain CAI17_04270 PF00378 Enoyl-CoA hydratase/isomerase CAI17_04305 PF00501 AMP-binding enzyme CAI17_04305 PF13193 AMP-binding enzyme C-terminal domain CAI17_04315 PF00694 Aconitase C-terminal domain CAI17_04315 PF00330 Aconitase family (aconitate hydratase) CAI17_04330 PF06434 Aconitate hydratase 2 N-terminus CAI17_04330 PF00330 Aconitase family (aconitate hydratase) CAI17_04330 PF11791 Aconitate B N-terminal domain CAI17_04335 PF00561 alpha/beta hydrolase fold CAI17_04340 PF03707 Bacterial signalling protein N terminal repeat CAI17_04340 PF00990 Diguanylate cyclase, GGDEF domain CAI17_04340 PF00563 EAL domain CAI17_04345 PF00072 Response regulator receiver domain CAI17_04345 PF01339 CheB methylesterase CAI17_04350 PF03975 CheD chemotactic sensory transduction CAI17_04355 PF03705 CheR methyltransferase, all-alpha domain CAI17_04355 PF01739 CheR methyltransferase, SAM binding domain CAI17_04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04360 PF00672 HAMP domain CAI17_04360 PF02203 Tar ligand binding domain homologue CAI17_04370 PF01584 CheW-like domain CAI17_04375 PF07317 Flagellar regulator YcgR CAI17_04375 PF07238 PilZ domain CAI17_04385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04385 PF02203 Tar ligand binding domain homologue CAI17_04385 PF00672 HAMP domain CAI17_04390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04390 PF00672 HAMP domain CAI17_04390 PF02203 Tar ligand binding domain homologue CAI17_04395 PF00672 HAMP domain CAI17_04395 PF02203 Tar ligand binding domain homologue CAI17_04395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04400 PF02203 Tar ligand binding domain homologue CAI17_04400 PF00672 HAMP domain CAI17_04400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04405 PF00672 HAMP domain CAI17_04405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04405 PF02203 Tar ligand binding domain homologue CAI17_04415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04415 PF00672 HAMP domain CAI17_04415 PF02203 Tar ligand binding domain homologue CAI17_04420 PF02203 Tar ligand binding domain homologue CAI17_04420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04420 PF00672 HAMP domain CAI17_04430 PF02203 Tar ligand binding domain homologue CAI17_04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04430 PF00672 HAMP domain CAI17_04435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04435 PF00672 HAMP domain CAI17_04435 PF02203 Tar ligand binding domain homologue CAI17_04450 PF00672 HAMP domain CAI17_04450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04450 PF02203 Tar ligand binding domain homologue CAI17_04455 PF08269 Cache domain CAI17_04455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04455 PF08269 Cache domain CAI17_04465 PF00672 HAMP domain CAI17_04465 PF02203 Tar ligand binding domain homologue CAI17_04465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04470 PF02895 Signal transducing histidine kinase, homodimeric domain CAI17_04470 PF01627 Hpt domain CAI17_04470 PF09078 CheY binding CAI17_04470 PF01584 CheW-like domain CAI17_04470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_04475 PF00072 Response regulator receiver domain CAI17_04485 PF01584 CheW-like domain CAI17_04490 PF13614 AAA domain CAI17_04495 PF13677 Membrane MotB of proton-channel complex MotA/MotB CAI17_04495 PF00691 OmpA family CAI17_04500 PF01618 MotA/TolQ/ExbB proton channel family CAI17_04540 PF13186 Iron-sulfur cluster-binding domain CAI17_04540 PF04055 Radical SAM superfamily CAI17_04550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_04550 PF01627 Hpt domain CAI17_04550 PF02895 Signal transducing histidine kinase, homodimeric domain CAI17_04550 PF00072 Response regulator receiver domain CAI17_04550 PF01584 CheW-like domain CAI17_04555 PF04344 Chemotaxis phosphatase, CheZ CAI17_04560 PF00072 Response regulator receiver domain CAI17_04565 PF04542 Sigma-70 region 2 CAI17_04565 PF04539 Sigma-70 region 3 CAI17_04565 PF04545 Sigma-70, region 4 CAI17_04570 PF10609 NUBPL iron-transfer P-loop NTPase CAI17_04575 PF00448 SRP54-type protein, GTPase domain CAI17_04580 PF00771 FHIPEP family CAI17_04585 PF01312 FlhB HrpN YscU SpaS Family CAI17_04605 PF03707 Bacterial signalling protein N terminal repeat CAI17_04605 PF00990 Diguanylate cyclase, GGDEF domain CAI17_04605 PF13188 PAS domain CAI17_04605 PF00563 EAL domain CAI17_04610 PF01311 Bacterial export proteins, family 1 CAI17_04615 PF01313 Bacterial export proteins, family 3 CAI17_04620 PF00813 FliP family CAI17_04625 PF04347 Flagellar biosynthesis protein, FliO CAI17_04630 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CAI17_04635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CAI17_04635 PF02154 Flagellar motor switch protein FliM CAI17_04655 PF18269 T3SS EscN ATPase C-terminal domain CAI17_04655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI17_04665 PF01706 FliG C-terminal domain CAI17_04665 PF14842 FliG N-terminal domain CAI17_04665 PF14841 FliG middle domain CAI17_04670 PF01514 Secretory protein of YscJ/FliF family CAI17_04670 PF08345 Flagellar M-ring protein C-terminal CAI17_04675 PF02049 Flagellar hook-basal body complex protein FliE CAI17_04680 PF00535 Glycosyl transferase family 2 CAI17_04680 PF00534 Glycosyl transferases group 1 CAI17_04765 PF00158 Sigma-54 interaction domain CAI17_04765 PF06490 Flagellar regulatory protein FleQ CAI17_04765 PF02954 Bacterial regulatory protein, Fis family CAI17_04770 PF00072 Response regulator receiver domain CAI17_04770 PF01339 CheB methylesterase CAI17_04775 PF04552 Sigma-54, DNA binding domain CAI17_04775 PF04963 Sigma-54 factor, core binding domain CAI17_04775 PF00309 Sigma-54 factor, Activator interacting domain (AID) CAI17_04780 PF00072 Response regulator receiver domain CAI17_04780 PF00196 Bacterial regulatory proteins, luxR family CAI17_04795 PF02561 Flagellar protein FliS CAI17_04800 PF07195 Flagellar hook-associated protein 2 C-terminus CAI17_04800 PF02465 Flagellar hook-associated protein 2 N-terminus CAI17_04800 PF07196 Flagellin hook IN motif CAI17_04805 PF00700 Bacterial flagellin C-terminal helical region CAI17_04805 PF00669 Bacterial flagellin N-terminal helical region CAI17_04810 PF00669 Bacterial flagellin N-terminal helical region CAI17_04810 PF00700 Bacterial flagellin C-terminal helical region CAI17_04815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_04815 PF07196 Flagellin hook IN motif CAI17_04820 PF10135 Rod binding protein CAI17_04820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CAI17_04825 PF02119 Flagellar P-ring protein CAI17_04830 PF02107 Flagellar L-ring protein CAI17_04835 PF00460 Flagella basal body rod protein CAI17_04835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_04845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_04845 PF00460 Flagella basal body rod protein CAI17_04855 PF07559 Flagellar basal body protein FlaE CAI17_04855 PF00460 Flagella basal body rod protein CAI17_04855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_04860 PF03963 Flagellar hook capping protein - N-terminal region CAI17_04865 PF00460 Flagella basal body rod protein CAI17_04865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_04875 PF00072 Response regulator receiver domain CAI17_04875 PF01584 CheW-like domain CAI17_04895 PF13426 PAS domain CAI17_04895 PF00989 PAS fold CAI17_04895 PF00512 His Kinase A (phospho-acceptor) domain CAI17_04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_04895 PF13188 PAS domain CAI17_04900 PF00563 EAL domain CAI17_04900 PF00990 Diguanylate cyclase, GGDEF domain CAI17_04900 PF03707 Bacterial signalling protein N terminal repeat CAI17_04905 PF07730 Histidine kinase CAI17_04905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_04920 PF00672 HAMP domain CAI17_04920 PF12729 Four helix bundle sensory module for signal transduction CAI17_04920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_04925 PF04356 Protein of unknown function (DUF489) CAI17_04935 PF00293 NUDIX domain CAI17_04940 PF02617 ATP-dependent Clp protease adaptor protein ClpS CAI17_04945 PF17871 AAA lid domain CAI17_04945 PF07724 AAA domain (Cdc48 subfamily) CAI17_04945 PF00004 ATPase family associated with various cellular activities (AAA) CAI17_04945 PF02861 Clp amino terminal domain, pathogenicity island component CAI17_04945 PF10431 C-terminal, D2-small domain, of ClpB protein CAI17_04950 PF01176 Translation initiation factor 1A / IF-1 CAI17_04955 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CAI17_04965 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_04970 PF01580 FtsK/SpoIIIE family CAI17_04970 PF17854 FtsK alpha domain CAI17_04970 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CAI17_04970 PF09397 Ftsk gamma domain CAI17_04980 PF03548 Outer membrane lipoprotein carrier protein LolA CAI17_04990 PF12002 MgsA AAA+ ATPase C terminal CAI17_04990 PF00004 ATPase family associated with various cellular activities (AAA) CAI17_04990 PF16193 AAA C-terminal domain CAI17_04995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CAI17_05005 PF02803 Thiolase, C-terminal domain CAI17_05005 PF00108 Thiolase, N-terminal domain CAI17_05010 PF00378 Enoyl-CoA hydratase/isomerase CAI17_05010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CAI17_05010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CAI17_05020 PF00334 Nucleoside diphosphate kinase CAI17_05025 PF04055 Radical SAM superfamily CAI17_05035 PF13464 Domain of unknown function (DUF4115) CAI17_05045 PF01011 PQQ enzyme repeat CAI17_05045 PF13360 PQQ-like domain CAI17_05050 PF01926 50S ribosome-binding GTPase CAI17_05050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CAI17_05055 PF03453 MoeA N-terminal region (domain I and II) CAI17_05055 PF03454 MoeA C-terminal region (domain IV) CAI17_05055 PF00994 Probable molybdopterin binding domain CAI17_05065 PF00899 ThiF family CAI17_05095 PF13823 Alcohol dehydrogenase GroES-associated CAI17_05095 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_05095 PF00107 Zinc-binding dehydrogenase CAI17_05105 PF03372 Endonuclease/Exonuclease/phosphatase family CAI17_05120 PF12804 MobA-like NTP transferase domain CAI17_05130 PF10414 Sirohaem synthase dimerisation region CAI17_05130 PF14824 Sirohaem biosynthesis protein central CAI17_05130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CAI17_05170 PF05974 Domain of unknown function (DUF892) CAI17_05200 PF00196 Bacterial regulatory proteins, luxR family CAI17_05200 PF00072 Response regulator receiver domain CAI17_05205 PF00072 Response regulator receiver domain CAI17_05205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_05205 PF13426 PAS domain CAI17_05205 PF08448 PAS fold CAI17_05205 PF00512 His Kinase A (phospho-acceptor) domain CAI17_05215 PF00873 AcrB/AcrD/AcrF family CAI17_05220 PF00529 HlyD membrane-fusion protein of T1SS CAI17_05220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_05230 PF03797 Autotransporter beta-domain CAI17_05230 PF00082 Subtilase family CAI17_05250 PF07690 Major Facilitator Superfamily CAI17_05255 PF00072 Response regulator receiver domain CAI17_05260 PF00672 HAMP domain CAI17_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_05260 PF01627 Hpt domain CAI17_05260 PF00072 Response regulator receiver domain CAI17_05260 PF00512 His Kinase A (phospho-acceptor) domain CAI17_05260 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI17_05265 PF04286 Protein of unknown function (DUF445) CAI17_05275 PF00202 Aminotransferase class-III CAI17_05290 PF07690 Major Facilitator Superfamily CAI17_05295 PF02634 FdhD/NarQ family CAI17_05300 PF00384 Molybdopterin oxidoreductase CAI17_05310 PF07690 Major Facilitator Superfamily CAI17_05310 PF00083 Sugar (and other) transporter CAI17_05315 PF01814 Hemerythrin HHE cation binding domain CAI17_05320 PF00990 Diguanylate cyclase, GGDEF domain CAI17_05320 PF00072 Response regulator receiver domain CAI17_05325 PF01266 FAD dependent oxidoreductase CAI17_05330 PF00120 Glutamine synthetase, catalytic domain CAI17_05335 PF07722 Peptidase C26 CAI17_05340 PF00120 Glutamine synthetase, catalytic domain CAI17_05345 PF00202 Aminotransferase class-III CAI17_05350 PF13416 Bacterial extracellular solute-binding protein CAI17_05355 PF13533 Biotin-lipoyl like CAI17_05360 PF07690 Major Facilitator Superfamily CAI17_05365 PF02321 Outer membrane efflux protein CAI17_05370 PF00005 ABC transporter CAI17_05370 PF08402 TOBE domain CAI17_05375 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_05380 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_05385 PF00171 Aldehyde dehydrogenase family CAI17_05400 PF00571 CBS domain CAI17_05400 PF03471 Transporter associated domain CAI17_05410 PF02130 Uncharacterized protein family UPF0054 CAI17_05420 PF02562 PhoH-like protein CAI17_05425 PF00919 Uncharacterized protein family UPF0004 CAI17_05425 PF04055 Radical SAM superfamily CAI17_05425 PF01938 TRAM domain CAI17_05440 PF01464 Transglycosylase SLT domain CAI17_05455 PF00033 Cytochrome b/b6/petB CAI17_05455 PF00032 Cytochrome b(C-terminal)/b6/petD CAI17_05460 PF02167 Cytochrome C1 family CAI17_05465 PF02798 Glutathione S-transferase, N-terminal domain CAI17_05465 PF00043 Glutathione S-transferase, C-terminal domain CAI17_05470 PF04386 Stringent starvation protein B CAI17_05490 PF00270 DEAD/DEAH box helicase CAI17_05490 PF08494 DEAD/H associated CAI17_05490 PF00271 Helicase conserved C-terminal domain CAI17_05495 PF02245 Methylpurine-DNA glycosylase (MPG) CAI17_05500 PF00672 HAMP domain CAI17_05500 PF02743 Cache domain CAI17_05500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_05505 PF01584 CheW-like domain CAI17_05535 PF01612 3'-5' exonuclease CAI17_05535 PF00570 HRDC domain CAI17_05545 PF03781 Sulfatase-modifying factor enzyme 1 CAI17_05560 PF13742 OB-fold nucleic acid binding domain CAI17_05560 PF02601 Exonuclease VII, large subunit CAI17_05565 PF08331 Domain of unknown function (DUF1730) CAI17_05570 PF01256 Carbohydrate kinase CAI17_05570 PF03853 YjeF-related protein N-terminus CAI17_05575 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CAI17_05580 PF01520 N-acetylmuramoyl-L-alanine amidase CAI17_05580 PF11741 AMIN domain CAI17_05585 PF01119 DNA mismatch repair protein, C-terminal domain CAI17_05585 PF08676 MutL C terminal dimerisation domain CAI17_05605 PF07879 PHB/PHA accumulation regulator DNA-binding domain CAI17_05605 PF05233 PHB accumulation regulatory domain CAI17_05615 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI17_05625 PF02796 Helix-turn-helix domain of resolvase CAI17_05625 PF00239 Resolvase, N terminal domain CAI17_05665 PF07152 YaeQ protein CAI17_05670 PF00313 'Cold-shock' DNA-binding domain CAI17_05675 PF02798 Glutathione S-transferase, N-terminal domain CAI17_05675 PF14497 Glutathione S-transferase, C-terminal domain CAI17_05685 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CAI17_05690 PF00156 Phosphoribosyl transferase domain CAI17_05695 PF00270 DEAD/DEAH box helicase CAI17_05695 PF03880 DbpA RNA binding domain CAI17_05695 PF00271 Helicase conserved C-terminal domain CAI17_05715 PF00545 ribonuclease CAI17_05720 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CAI17_05720 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CAI17_05725 PF00459 Inositol monophosphatase family CAI17_05730 PF00588 SpoU rRNA Methylase family CAI17_05740 PF13188 PAS domain CAI17_05740 PF03707 Bacterial signalling protein N terminal repeat CAI17_05740 PF00563 EAL domain CAI17_05740 PF00990 Diguanylate cyclase, GGDEF domain CAI17_05745 PF04055 Radical SAM superfamily CAI17_05750 PF09285 Elongation factor P, C-terminal CAI17_05750 PF01132 Elongation factor P (EF-P) OB domain CAI17_05750 PF08207 Elongation factor P (EF-P) KOW-like domain CAI17_05760 PF01979 Amidohydrolase family CAI17_05770 PF13419 Haloacid dehalogenase-like hydrolase CAI17_05780 PF00295 Glycosyl hydrolases family 28 CAI17_05825 PF00753 Metallo-beta-lactamase superfamily CAI17_05835 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CAI17_05840 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CAI17_05865 PF01979 Amidohydrolase family CAI17_05870 PF01809 Putative membrane protein insertion efficiency factor CAI17_05875 PF01258 Prokaryotic dksA/traR C4-type zinc finger CAI17_05885 PF02657 Fe-S metabolism associated domain CAI17_05890 PF09190 DALR domain CAI17_05890 PF01406 tRNA synthetases class I (C) catalytic domain CAI17_05900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CAI17_05900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CAI17_05905 PF00764 Arginosuccinate synthase CAI17_05915 PF07687 Peptidase dimerisation domain CAI17_05915 PF01546 Peptidase family M20/M25/M40 CAI17_05920 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase CAI17_05920 PF00696 Amino acid kinase family CAI17_05930 PF01118 Semialdehyde dehydrogenase, NAD binding domain CAI17_05935 PF00206 Lyase CAI17_05945 PF00696 Amino acid kinase family CAI17_05945 PF01472 PUA domain CAI17_05950 PF00171 Aldehyde dehydrogenase family CAI17_05960 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CAI17_05960 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CAI17_05975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI17_05985 PF02322 Cytochrome bd terminal oxidase subunit II CAI17_05990 PF01654 Cytochrome bd terminal oxidase subunit I CAI17_05995 PF00005 ABC transporter CAI17_05995 PF00664 ABC transporter transmembrane region CAI17_06000 PF00664 ABC transporter transmembrane region CAI17_06000 PF00005 ABC transporter CAI17_06005 PF00313 'Cold-shock' DNA-binding domain CAI17_06010 PF00561 alpha/beta hydrolase fold CAI17_06020 PF03918 Cytochrome C biogenesis protein CAI17_06025 PF08534 Redoxin CAI17_06030 PF01578 Cytochrome C assembly protein CAI17_06030 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CAI17_06035 PF03100 CcmE CAI17_06045 PF01578 Cytochrome C assembly protein CAI17_06050 PF03379 CcmB protein CAI17_06055 PF00005 ABC transporter CAI17_06060 PF00155 Aminotransferase class I and II CAI17_06065 PF00795 Carbon-nitrogen hydrolase CAI17_06080 PF01479 S4 domain CAI17_06080 PF00849 RNA pseudouridylate synthase CAI17_06085 PF04079 Segregation and condensation complex subunit ScpB CAI17_06090 PF02616 Segregation and condensation protein ScpA CAI17_06095 PF03795 YCII-related domain CAI17_06105 PF00356 Bacterial regulatory proteins, lacI family CAI17_06125 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_06130 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_06155 PF00795 Carbon-nitrogen hydrolase CAI17_06160 PF04371 Porphyromonas-type peptidyl-arginine deiminase CAI17_06175 PF00444 Ribosomal protein L36 CAI17_06180 PF02224 Cytidylate kinase CAI17_06185 PF00575 S1 RNA binding domain CAI17_06190 PF00216 Bacterial DNA-binding protein CAI17_06200 PF18073 Rubredoxin metal binding domain CAI17_06205 PF00953 Glycosyl transferase family 4 CAI17_06210 PF02719 Polysaccharide biosynthesis protein CAI17_06215 PF00483 Nucleotidyl transferase CAI17_06225 PF00999 Sodium/hydrogen exchanger family CAI17_06225 PF02254 TrkA-N domain CAI17_06235 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CAI17_06235 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CAI17_06240 PF00571 CBS domain CAI17_06240 PF00478 IMP dehydrogenase / GMP reductase domain CAI17_06245 PF02540 NAD synthase CAI17_06245 PF00958 GMP synthase C terminal domain CAI17_06245 PF00117 Glutamine amidotransferase class-I CAI17_06250 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CAI17_06255 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CAI17_06255 PF00361 Proton-conducting membrane transporter CAI17_06255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI17_06260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_06260 PF03466 LysR substrate binding domain CAI17_06280 PF00072 Response regulator receiver domain CAI17_06280 PF00196 Bacterial regulatory proteins, luxR family CAI17_06295 PF00857 Isochorismatase family CAI17_06320 PF05977 Transmembrane secretion effector CAI17_06335 PF00561 alpha/beta hydrolase fold CAI17_06340 PF01566 Natural resistance-associated macrophage protein CAI17_06345 PF01325 Iron dependent repressor, N-terminal DNA binding domain CAI17_06345 PF02742 Iron dependent repressor, metal binding and dimerisation domain CAI17_06350 PF14437 MafB19-like deaminase CAI17_06355 PF00929 Exonuclease CAI17_06405 PF03695 Uncharacterised protein family (UPF0149) CAI17_06405 PF02810 SEC-C motif CAI17_06470 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CAI17_06490 PF00924 Mechanosensitive ion channel CAI17_06490 PF05552 Conserved TM helix CAI17_06495 PF02896 PEP-utilising enzyme, TIM barrel domain CAI17_06495 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CAI17_06495 PF00391 PEP-utilising enzyme, mobile domain CAI17_06500 PF03618 Kinase/pyrophosphorylase CAI17_06520 PF01066 CDP-alcohol phosphatidyltransferase CAI17_06530 PF00561 alpha/beta hydrolase fold CAI17_06545 PF01266 FAD dependent oxidoreductase CAI17_06545 PF00355 Rieske [2Fe-2S] domain CAI17_06555 PF09371 Tex-like protein N-terminal domain CAI17_06555 PF16921 Tex protein YqgF-like domain CAI17_06555 PF17674 HHH domain CAI17_06555 PF00575 S1 RNA binding domain CAI17_06560 PF00512 His Kinase A (phospho-acceptor) domain CAI17_06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_06560 PF00072 Response regulator receiver domain CAI17_06560 PF09308 LuxQ, periplasmic CAI17_06605 PF00034 Cytochrome c CAI17_06620 PF00873 AcrB/AcrD/AcrF family CAI17_06625 PF00873 AcrB/AcrD/AcrF family CAI17_06635 PF01081 KDPG and KHG aldolase CAI17_06640 PF00920 Dehydratase family CAI17_06645 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CAI17_06650 PF02685 Glucokinase CAI17_06655 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CAI17_06655 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CAI17_06660 PF00005 ABC transporter CAI17_06660 PF17912 MalK OB fold domain CAI17_06675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CAI17_06680 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CAI17_06685 PF00890 FAD binding domain CAI17_06685 PF02910 Fumarate reductase flavoprotein C-term CAI17_06695 PF13085 2Fe-2S iron-sulfur cluster binding domain CAI17_06695 PF13237 4Fe-4S dicluster domain CAI17_06700 PF03937 Flavinator of succinate dehydrogenase CAI17_06710 PF02687 FtsX-like permease family CAI17_06710 PF12704 MacB-like periplasmic core domain CAI17_06715 PF00005 ABC transporter CAI17_06725 PF00753 Metallo-beta-lactamase superfamily CAI17_06725 PF03772 Competence protein CAI17_06730 PF01618 MotA/TolQ/ExbB proton channel family CAI17_06740 PF00664 ABC transporter transmembrane region CAI17_06740 PF00005 ABC transporter CAI17_06745 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CAI17_06750 PF02348 Cytidylyltransferase CAI17_06755 PF01451 Low molecular weight phosphotyrosine protein phosphatase CAI17_06765 PF02151 UvrB/uvrC motif CAI17_06765 PF01541 GIY-YIG catalytic domain CAI17_06765 PF08459 UvrC Helix-hairpin-helix N-terminal CAI17_06770 PF01066 CDP-alcohol phosphatidyltransferase CAI17_06845 PF00668 Condensation domain CAI17_06845 PF13193 AMP-binding enzyme C-terminal domain CAI17_06845 PF00501 AMP-binding enzyme CAI17_06845 PF00550 Phosphopantetheine attachment site CAI17_06850 PF00501 AMP-binding enzyme CAI17_06850 PF00975 Thioesterase domain CAI17_06850 PF13193 AMP-binding enzyme C-terminal domain CAI17_06850 PF00668 Condensation domain CAI17_06850 PF00550 Phosphopantetheine attachment site CAI17_06865 PF01648 4'-phosphopantetheinyl transferase superfamily CAI17_06865 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CAI17_06875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI17_06875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI17_06875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI17_06885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI17_06900 PF00072 Response regulator receiver domain CAI17_06900 PF00196 Bacterial regulatory proteins, luxR family CAI17_06905 PF10150 Ribonuclease E/G family CAI17_06905 PF12111 Polyribonucleotide phosphorylase C terminal CAI17_06905 PF00575 S1 RNA binding domain CAI17_06910 PF01479 S4 domain CAI17_06910 PF00849 RNA pseudouridylate synthase CAI17_06915 PF11737 Protein of unknown function (DUF3300) CAI17_06920 PF02535 ZIP Zinc transporter CAI17_06930 PF01329 Pterin 4 alpha carbinolamine dehydratase CAI17_06935 PF01106 NifU-like domain CAI17_06950 PF01526 Tn3 transposase DDE domain CAI17_06950 PF13700 Domain of unknown function (DUF4158) CAI17_07025 PF12697 Alpha/beta hydrolase family CAI17_07025 PF08241 Methyltransferase domain CAI17_07060 PF00106 short chain dehydrogenase CAI17_07065 PF00881 Nitroreductase family CAI17_07075 PF01494 FAD binding domain CAI17_07080 PF09335 SNARE associated Golgi protein CAI17_07115 PF05088 Bacterial NAD-glutamate dehydrogenase CAI17_07125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_07125 PF00529 HlyD membrane-fusion protein of T1SS CAI17_07130 PF00873 AcrB/AcrD/AcrF family CAI17_07140 PF00356 Bacterial regulatory proteins, lacI family CAI17_07145 PF00381 PTS HPr component phosphorylation site CAI17_07145 PF02896 PEP-utilising enzyme, TIM barrel domain CAI17_07145 PF05524 PEP-utilising enzyme, N-terminal CAI17_07145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CAI17_07145 PF00391 PEP-utilising enzyme, mobile domain CAI17_07150 PF00294 pfkB family carbohydrate kinase CAI17_07155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CAI17_07195 PF02355 Protein export membrane protein CAI17_07195 PF07549 SecD/SecF GG Motif CAI17_07200 PF13721 SecD export protein N-terminal TM region CAI17_07200 PF07549 SecD/SecF GG Motif CAI17_07200 PF02355 Protein export membrane protein CAI17_07205 PF02699 Preprotein translocase subunit CAI17_07210 PF01702 Queuine tRNA-ribosyltransferase CAI17_07215 PF02547 Queuosine biosynthesis protein CAI17_07260 PF00759 Glycosyl hydrolase family 9 CAI17_07260 PF02927 Cellulase N-terminal ig-like domain CAI17_07270 PF00037 4Fe-4S binding domain CAI17_07285 PF01467 Cytidylyltransferase-like CAI17_07295 PF00183 Hsp90 protein CAI17_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_07320 PF00171 Aldehyde dehydrogenase family CAI17_07340 PF01180 Dihydroorotate dehydrogenase CAI17_07345 PF01565 FAD binding domain CAI17_07345 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CAI17_07360 PF07690 Major Facilitator Superfamily CAI17_07375 PF01569 PAP2 superfamily CAI17_07380 PF04551 GcpE protein CAI17_07395 PF00072 Response regulator receiver domain CAI17_07400 PF00150 Cellulase (glycosyl hydrolase family 5) CAI17_07400 PF02013 Cellulose or protein binding domain CAI17_07410 PF00360 Phytochrome region CAI17_07410 PF00990 Diguanylate cyclase, GGDEF domain CAI17_07410 PF01590 GAF domain CAI17_07410 PF00563 EAL domain CAI17_07425 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI17_07425 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI17_07425 PF14310 Fibronectin type III-like domain CAI17_07450 PF00342 Phosphoglucose isomerase CAI17_07455 PF02261 Aspartate decarboxylase CAI17_07460 PF02569 Pantoate-beta-alanine ligase CAI17_07465 PF02548 Ketopantoate hydroxymethyltransferase CAI17_07470 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CAI17_07475 PF12627 Probable RNA and SrmB- binding site of polymerase A CAI17_07475 PF01743 Poly A polymerase head domain CAI17_07475 PF12626 Polymerase A arginine-rich C-terminus CAI17_07485 PF02649 Type I GTP cyclohydrolase folE2 CAI17_07490 PF01520 N-acetylmuramoyl-L-alanine amidase CAI17_07510 PF00083 Sugar (and other) transporter CAI17_07520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CAI17_07520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CAI17_07530 PF17137 Domain of unknown function (DUF5110) CAI17_07530 PF16338 Domain of unknown function (DUF4968) CAI17_07530 PF01055 Glycosyl hydrolases family 31 CAI17_07545 PF00942 Cellulose binding domain CAI17_07545 PF03442 Carbohydrate binding domain X2 CAI17_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_07560 PF03466 LysR substrate binding domain CAI17_07570 PF01081 KDPG and KHG aldolase CAI17_07575 PF13378 Enolase C-terminal domain-like CAI17_07575 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI17_07580 PF08450 SMP-30/Gluconolactonase/LRE-like region CAI17_07585 PF05035 2-keto-3-deoxy-galactonokinase CAI17_07590 PF11953 Domain of unknown function (DUF3470) CAI17_07590 PF00037 4Fe-4S binding domain CAI17_07600 PF00701 Dihydrodipicolinate synthetase family CAI17_07615 PF00578 AhpC/TSA family CAI17_07620 PF13638 PIN domain CAI17_07620 PF02562 PhoH-like protein CAI17_07635 PF08543 Phosphomethylpyrimidine kinase CAI17_07660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_07660 PF03466 LysR substrate binding domain CAI17_07665 PF17954 Quercetinase C-terminal cupin domain CAI17_07665 PF02678 Pirin CAI17_07670 PF13426 PAS domain CAI17_07670 PF08447 PAS fold CAI17_07670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_07685 PF02599 Global regulator protein family CAI17_07690 PF01411 tRNA synthetases class II (A) CAI17_07690 PF02272 DHHA1 domain CAI17_07690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CAI17_07695 PF02631 RecX family CAI17_07705 PF00154 recA bacterial DNA recombination protein CAI17_07710 PF01726 LexA DNA binding domain CAI17_07710 PF00717 Peptidase S24-like CAI17_07715 PF03109 ABC1 family CAI17_07720 PF02464 Competence-damaged protein CAI17_07725 PF01926 50S ribosome-binding GTPase CAI17_07725 PF16360 GTP-binding GTPase Middle Region CAI17_07725 PF13167 GTP-binding GTPase N-terminal CAI17_07730 PF17209 Hfq protein CAI17_07740 PF00809 Pterin binding enzyme CAI17_07745 PF00004 ATPase family associated with various cellular activities (AAA) CAI17_07745 PF17862 AAA+ lid domain CAI17_07745 PF06480 FtsH Extracellular CAI17_07745 PF01434 Peptidase family M41 CAI17_07750 PF01728 FtsJ-like methyltransferase CAI17_07755 PF01985 CRS1 / YhbY (CRM) domain CAI17_07760 PF04430 Protein of unknown function (DUF498/DUF598) CAI17_07765 PF01476 LysM domain CAI17_07765 PF01551 Peptidase family M23 CAI17_07770 PF09335 SNARE associated Golgi protein CAI17_07780 PF01975 Survival protein SurE CAI17_07785 PF01713 Smr domain CAI17_07790 PF01142 tRNA pseudouridine synthase D (TruD) CAI17_07795 PF02542 YgbB family CAI17_07800 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CAI17_07805 PF04977 Septum formation initiator CAI17_07810 PF03952 Enolase, N-terminal domain CAI17_07810 PF00113 Enolase, C-terminal TIM barrel domain CAI17_07820 PF00793 DAHP synthetase I family CAI17_07825 PF06418 CTP synthase N-terminus CAI17_07825 PF00117 Glutamine amidotransferase class-I CAI17_07835 PF01751 Toprim domain CAI17_07835 PF00986 DNA gyrase B subunit, carboxyl terminus CAI17_07835 PF00204 DNA gyrase B CAI17_07835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_07850 PF01384 Phosphate transporter family CAI17_07865 PF01595 Cyclin M transmembrane N-terminal domain CAI17_07865 PF03471 Transporter associated domain CAI17_07865 PF00571 CBS domain CAI17_07880 PF00296 Luciferase-like monooxygenase CAI17_07885 PF07690 Major Facilitator Superfamily CAI17_07890 PF00005 ABC transporter CAI17_07890 PF00664 ABC transporter transmembrane region CAI17_07895 PF00005 ABC transporter CAI17_07935 PF08241 Methyltransferase domain CAI17_07950 PF00535 Glycosyl transferase family 2 CAI17_07955 PF01943 Polysaccharide biosynthesis protein CAI17_07960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CAI17_07980 PF05523 WxcM-like, C-terminal CAI17_07995 PF00034 Cytochrome c CAI17_08010 PF08281 Sigma-70, region 4 CAI17_08010 PF04542 Sigma-70 region 2 CAI17_08020 PF00082 Subtilase family CAI17_08025 PF01578 Cytochrome C assembly protein CAI17_08035 PF03100 CcmE CAI17_08040 PF01578 Cytochrome C assembly protein CAI17_08040 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CAI17_08045 PF08534 Redoxin CAI17_08050 PF03918 Cytochrome C biogenesis protein CAI17_08060 PF00072 Response regulator receiver domain CAI17_08060 PF13426 PAS domain CAI17_08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_08065 PF06745 KaiC CAI17_08075 PF00512 His Kinase A (phospho-acceptor) domain CAI17_08075 PF01627 Hpt domain CAI17_08075 PF00072 Response regulator receiver domain CAI17_08075 PF00672 HAMP domain CAI17_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_08075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI17_08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_08080 PF00072 Response regulator receiver domain CAI17_08080 PF13188 PAS domain CAI17_08080 PF08448 PAS fold CAI17_08080 PF00512 His Kinase A (phospho-acceptor) domain CAI17_08095 PF01494 FAD binding domain CAI17_08100 PF02203 Tar ligand binding domain homologue CAI17_08100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_08100 PF00672 HAMP domain CAI17_08125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_08125 PF03466 LysR substrate binding domain CAI17_08130 PF02525 Flavodoxin-like fold CAI17_08135 PF02403 Seryl-tRNA synthetase N-terminal domain CAI17_08135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI17_08140 PF03544 Gram-negative bacterial TonB protein C-terminal CAI17_08150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CAI17_08155 PF01817 Chorismate mutase type II CAI17_08155 PF00800 Prephenate dehydratase CAI17_08155 PF01842 ACT domain CAI17_08160 PF00266 Aminotransferase class-V CAI17_08165 PF00174 Oxidoreductase molybdopterin binding domain CAI17_08170 PF01794 Ferric reductase like transmembrane component CAI17_08195 PF07702 UTRA domain CAI17_08195 PF00392 Bacterial regulatory proteins, gntR family CAI17_08210 PF07969 Amidohydrolase family CAI17_08215 PF00221 Aromatic amino acid lyase CAI17_08225 PF17391 Urocanase N-terminal domain CAI17_08225 PF17392 Urocanase C-terminal domain CAI17_08225 PF01175 Urocanase Rossmann-like domain CAI17_08240 PF13360 PQQ-like domain CAI17_08250 PF01008 Initiation factor 2 subunit family CAI17_08265 PF00152 tRNA synthetases class II (D, K and N) CAI17_08270 PF03120 NAD-dependent DNA ligase OB-fold domain CAI17_08270 PF00533 BRCA1 C Terminus (BRCT) domain CAI17_08270 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CAI17_08270 PF12826 Helix-hairpin-helix motif CAI17_08270 PF01653 NAD-dependent DNA ligase adenylation domain CAI17_08275 PF00155 Aminotransferase class I and II CAI17_08285 PF04354 ZipA, C-terminal FtsZ-binding domain CAI17_08290 PF02463 RecF/RecN/SMC N terminal domain CAI17_08295 PF01281 Ribosomal protein L9, N-terminal domain CAI17_08295 PF03948 Ribosomal protein L9, C-terminal domain CAI17_08300 PF01084 Ribosomal protein S18 CAI17_08305 PF01250 Ribosomal protein S6 CAI17_08310 PF01521 Iron-sulphur cluster biosynthesis CAI17_08320 PF00152 tRNA synthetases class II (D, K and N) CAI17_08320 PF01336 OB-fold nucleic acid binding domain CAI17_08340 PF04299 Putative FMN-binding domain CAI17_08360 PF00072 Response regulator receiver domain CAI17_08360 PF00196 Bacterial regulatory proteins, luxR family CAI17_08405 PF00484 Carbonic anhydrase CAI17_08410 PF06052 3-hydroxyanthranilic acid dioxygenase CAI17_08420 PF00266 Aminotransferase class-V CAI17_08425 PF01494 FAD binding domain CAI17_08435 PF00929 Exonuclease CAI17_08435 PF08411 Exonuclease C-terminal CAI17_08460 PF01513 ATP-NAD kinase CAI17_08465 PF01170 Putative RNA methylase family UPF0020 CAI17_08465 PF02926 THUMP domain CAI17_08465 PF10672 S-adenosylmethionine-dependent methyltransferase CAI17_08505 PF00581 Rhodanese-like domain CAI17_08510 PF00293 NUDIX domain CAI17_08515 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CAI17_08515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI17_08520 PF00378 Enoyl-CoA hydratase/isomerase CAI17_08530 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI17_08530 PF10576 Iron-sulfur binding domain of endonuclease III CAI17_08530 PF00633 Helix-hairpin-helix motif CAI17_08535 PF01740 STAS domain CAI17_08535 PF00916 Sulfate permease family CAI17_08555 PF12849 PBP superfamily domain CAI17_08560 PF12849 PBP superfamily domain CAI17_08565 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_08570 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_08575 PF00005 ABC transporter CAI17_08580 PF01895 PhoU domain CAI17_08590 PF00929 Exonuclease CAI17_08595 PF07694 5TMR of 5TMR-LYT CAI17_08595 PF00990 Diguanylate cyclase, GGDEF domain CAI17_08600 PF00588 SpoU rRNA Methylase family CAI17_08600 PF08032 RNA 2'-O ribose methyltransferase substrate binding CAI17_08610 PF00773 RNB domain CAI17_08610 PF08461 Ribonuclease R winged-helix domain CAI17_08610 PF00575 S1 RNA binding domain CAI17_08610 PF08206 Ribonuclease B OB domain CAI17_08610 PF17876 Cold shock domain CAI17_08630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_08630 PF02770 Acyl-CoA dehydrogenase, middle domain CAI17_08630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_08635 PF02770 Acyl-CoA dehydrogenase, middle domain CAI17_08635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_08635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_08640 PF01209 ubiE/COQ5 methyltransferase family CAI17_08645 PF00809 Pterin binding enzyme CAI17_08645 PF02574 Homocysteine S-methyltransferase CAI17_08670 PF00294 pfkB family carbohydrate kinase CAI17_08675 PF07690 Major Facilitator Superfamily CAI17_08680 PF00356 Bacterial regulatory proteins, lacI family CAI17_08695 PF04102 SlyX CAI17_08700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI17_08700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI17_08700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI17_08705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CAI17_08705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI17_08710 PF00255 Glutathione peroxidase CAI17_08720 PF00392 Bacterial regulatory proteins, gntR family CAI17_08725 PF00005 ABC transporter CAI17_08750 PF10415 Fumarase C C-terminus CAI17_08750 PF00206 Lyase CAI17_08755 PF01595 Cyclin M transmembrane N-terminal domain CAI17_08755 PF03471 Transporter associated domain CAI17_08755 PF00571 CBS domain CAI17_08765 PF08328 Adenylosuccinate lyase C-terminal CAI17_08765 PF00206 Lyase CAI17_08775 PF08007 Cupin superfamily protein CAI17_08785 PF16870 2-oxoglutarate dehydrogenase C-terminal CAI17_08785 PF00676 Dehydrogenase E1 component CAI17_08785 PF16078 2-oxoglutarate dehydrogenase N-terminus CAI17_08785 PF02779 Transketolase, pyrimidine binding domain CAI17_08790 PF00364 Biotin-requiring enzyme CAI17_08790 PF02817 e3 binding domain CAI17_08790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI17_08795 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_08795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI17_08800 PF03641 Possible lysine decarboxylase CAI17_08805 PF01205 Uncharacterized protein family UPF0029 CAI17_08810 PF00005 ABC transporter CAI17_08810 PF00664 ABC transporter transmembrane region CAI17_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_08815 PF03466 LysR substrate binding domain CAI17_08820 PF00005 ABC transporter CAI17_08820 PF00664 ABC transporter transmembrane region CAI17_08820 PF03412 Peptidase C39 family CAI17_08845 PF08543 Phosphomethylpyrimidine kinase CAI17_08855 PF00226 DnaJ domain CAI17_08855 PF00684 DnaJ central domain CAI17_08855 PF01556 DnaJ C terminal domain CAI17_08860 PF00012 Hsp70 protein CAI17_08865 PF01025 GrpE CAI17_08870 PF01628 HrcA protein C terminal domain CAI17_08870 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CAI17_08875 PF02463 RecF/RecN/SMC N terminal domain CAI17_08880 PF01475 Ferric uptake regulator family CAI17_08885 PF04355 SmpA / OmlA family CAI17_08890 PF03658 RnfH family Ubiquitin CAI17_08895 PF03364 Polyketide cyclase / dehydrase and lipid transport CAI17_08900 PF01668 SmpB protein CAI17_08905 PF00082 Subtilase family CAI17_08930 PF00990 Diguanylate cyclase, GGDEF domain CAI17_08940 PF00990 Diguanylate cyclase, GGDEF domain CAI17_08940 PF08448 PAS fold CAI17_08950 PF02321 Outer membrane efflux protein CAI17_08955 PF00106 short chain dehydrogenase CAI17_08960 PF00873 AcrB/AcrD/AcrF family CAI17_08965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_08980 PF03466 LysR substrate binding domain CAI17_08980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_08990 PF00691 OmpA family CAI17_08990 PF05736 OprF membrane domain CAI17_09000 PF03441 FAD binding domain of DNA photolyase CAI17_09000 PF00875 DNA photolyase CAI17_09005 PF03796 DnaB-like helicase C terminal domain CAI17_09005 PF00772 DnaB-like helicase N terminal domain CAI17_09010 PF03358 NADPH-dependent FMN reductase CAI17_09015 PF00733 Asparagine synthase CAI17_09015 PF13537 Glutamine amidotransferase domain CAI17_09025 PF02798 Glutathione S-transferase, N-terminal domain CAI17_09025 PF00043 Glutathione S-transferase, C-terminal domain CAI17_09035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_09035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_09035 PF02770 Acyl-CoA dehydrogenase, middle domain CAI17_09050 PF01026 TatD related DNase CAI17_09055 PF00899 ThiF family CAI17_09070 PF00313 'Cold-shock' DNA-binding domain CAI17_09080 PF02253 Phospholipase A1 CAI17_09085 PF00484 Carbonic anhydrase CAI17_09100 PF05683 Fumarase C-terminus CAI17_09100 PF05681 Fumarate hydratase (Fumerase) CAI17_09105 PF00005 ABC transporter CAI17_09110 PF00175 Oxidoreductase NAD-binding domain CAI17_09110 PF00970 Oxidoreductase FAD-binding domain CAI17_09115 PF00255 Glutathione peroxidase CAI17_09125 PF01432 Peptidase family M3 CAI17_09130 PF12802 MarR family CAI17_09155 PF00854 POT family CAI17_09170 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI17_09170 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI17_09170 PF14310 Fibronectin type III-like domain CAI17_09180 PF07690 Major Facilitator Superfamily CAI17_09185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_09185 PF00529 HlyD membrane-fusion protein of T1SS CAI17_09190 PF02321 Outer membrane efflux protein CAI17_09205 PF03989 DNA gyrase C-terminal domain, beta-propeller CAI17_09205 PF00521 DNA gyrase/topoisomerase IV, subunit A CAI17_09220 PF00210 Ferritin-like domain CAI17_09225 PF01804 Penicillin amidase CAI17_09230 PF00593 TonB dependent receptor CAI17_09230 PF07715 TonB-dependent Receptor Plug Domain CAI17_09240 PF13537 Glutamine amidotransferase domain CAI17_09240 PF00733 Asparagine synthase CAI17_09245 PF01546 Peptidase family M20/M25/M40 CAI17_09245 PF07687 Peptidase dimerisation domain CAI17_09250 PF03960 ArsC family CAI17_09255 PF00132 Bacterial transferase hexapeptide (six repeats) CAI17_09255 PF14602 Hexapeptide repeat of succinyl-transferase CAI17_09255 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CAI17_09260 PF08335 GlnD PII-uridylyltransferase CAI17_09260 PF01909 Nucleotidyltransferase domain CAI17_09260 PF01966 HD domain CAI17_09265 PF00557 Metallopeptidase family M24 CAI17_09300 PF00318 Ribosomal protein S2 CAI17_09305 PF00889 Elongation factor TS CAI17_09310 PF00990 Diguanylate cyclase, GGDEF domain CAI17_09310 PF00072 Response regulator receiver domain CAI17_09315 PF00696 Amino acid kinase family CAI17_09320 PF01765 Ribosome recycling factor CAI17_09325 PF01255 Putative undecaprenyl diphosphate synthase CAI17_09335 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CAI17_09335 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CAI17_09335 PF13288 DXP reductoisomerase C-terminal domain CAI17_09340 PF02163 Peptidase family M50 CAI17_09340 PF17820 PDZ domain CAI17_09345 PF01103 Surface antigen CAI17_09345 PF07244 Surface antigen variable number repeat CAI17_09355 PF00132 Bacterial transferase hexapeptide (six repeats) CAI17_09355 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CAI17_09360 PF07977 FabA-like domain CAI17_09365 PF00132 Bacterial transferase hexapeptide (six repeats) CAI17_09365 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CAI17_09370 PF02684 Lipid-A-disaccharide synthetase CAI17_09375 PF01351 Ribonuclease HII CAI17_09380 PF01336 OB-fold nucleic acid binding domain CAI17_09380 PF02811 PHP domain CAI17_09380 PF07733 Bacterial DNA polymerase III alpha NTPase domain CAI17_09380 PF14579 Helix-hairpin-helix motif CAI17_09380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CAI17_09385 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CAI17_09420 PF03551 Transcriptional regulator PadR-like family CAI17_09440 PF02592 Putative vitamin uptake transporter CAI17_09450 PF02574 Homocysteine S-methyltransferase CAI17_09455 PF00324 Amino acid permease CAI17_09460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CAI17_09465 PF13732 Domain of unknown function (DUF4162) CAI17_09465 PF00005 ABC transporter CAI17_09480 PF09334 tRNA synthetases class I (M) CAI17_09480 PF01588 Putative tRNA binding domain CAI17_09490 PF04060 Putative Fe-S cluster CAI17_09510 PF04542 Sigma-70 region 2 CAI17_09510 PF04545 Sigma-70, region 4 CAI17_09555 PF01042 Endoribonuclease L-PSP CAI17_09565 PF03706 Lysylphosphatidylglycerol synthase TM region CAI17_09565 PF09924 Uncharacterised conserved protein (DUF2156) CAI17_09595 PF07690 Major Facilitator Superfamily CAI17_09610 PF08274 PhnA Zinc-Ribbon CAI17_09610 PF03831 PhnA domain CAI17_09620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI17_09640 PF01258 Prokaryotic dksA/traR C4-type zinc finger CAI17_09650 PF07043 Protein of unknown function (DUF1328) CAI17_09655 PF01863 Protein of unknown function DUF45 CAI17_09670 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CAI17_09670 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CAI17_09680 PF02803 Thiolase, C-terminal domain CAI17_09680 PF00108 Thiolase, N-terminal domain CAI17_09710 PF01068 ATP dependent DNA ligase domain CAI17_09710 PF04675 DNA ligase N terminus CAI17_09710 PF04679 ATP dependent DNA ligase C terminal region CAI17_09720 PF04679 ATP dependent DNA ligase C terminal region CAI17_09720 PF01068 ATP dependent DNA ligase domain CAI17_09720 PF04675 DNA ligase N terminus CAI17_09725 PF08494 DEAD/H associated CAI17_09725 PF00271 Helicase conserved C-terminal domain CAI17_09725 PF00270 DEAD/DEAH box helicase CAI17_09740 PF00313 'Cold-shock' DNA-binding domain CAI17_09750 PF01048 Phosphorylase superfamily CAI17_09760 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI17_09765 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CAI17_09770 PF01593 Flavin containing amine oxidoreductase CAI17_09775 PF01323 DSBA-like thioredoxin domain CAI17_09780 PF01928 CYTH domain CAI17_09790 PF05958 tRNA (Uracil-5-)-methyltransferase CAI17_09800 PF02565 Recombination protein O C terminal CAI17_09800 PF11967 Recombination protein O N terminal CAI17_09805 PF07650 KH domain CAI17_09805 PF01926 50S ribosome-binding GTPase CAI17_09810 PF00035 Double-stranded RNA binding motif CAI17_09810 PF14622 Ribonuclease-III-like CAI17_09820 PF10502 Signal peptidase, peptidase S26 CAI17_09825 PF06421 GTP-binding protein LepA C-terminus CAI17_09825 PF03144 Elongation factor Tu domain 2 CAI17_09825 PF00009 Elongation factor Tu GTP binding domain CAI17_09825 PF00679 Elongation factor G C-terminus CAI17_09830 PF13180 PDZ domain CAI17_09840 PF08281 Sigma-70, region 4 CAI17_09840 PF04542 Sigma-70 region 2 CAI17_09845 PF00378 Enoyl-CoA hydratase/isomerase CAI17_09845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CAI17_09845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CAI17_09850 PF01545 Cation efflux family CAI17_09860 PF00378 Enoyl-CoA hydratase/isomerase CAI17_09860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CAI17_09860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CAI17_09865 PF00378 Enoyl-CoA hydratase/isomerase CAI17_09870 PF02770 Acyl-CoA dehydrogenase, middle domain CAI17_09870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_09870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_09875 PF00171 Aldehyde dehydrogenase family CAI17_09880 PF06114 IrrE N-terminal-like domain CAI17_09880 PF01381 Helix-turn-helix CAI17_09880 PF09856 Predicted transcriptional regulator (DUF2083) CAI17_09890 PF07745 Glycosyl hydrolase family 53 CAI17_09895 PF16355 Domain of unknown function (DUF4982) CAI17_09895 PF00703 Glycosyl hydrolases family 2 CAI17_09895 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CAI17_09895 PF02837 Glycosyl hydrolases family 2, sugar binding domain CAI17_09895 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CAI17_09915 PF13276 HTH-like domain CAI17_09915 PF13683 Integrase core domain CAI17_09940 PF03527 RHS protein CAI17_09940 PF05593 RHS Repeat CAI17_09945 PF03527 RHS protein CAI17_09945 PF05593 RHS Repeat CAI17_09980 PF13700 Domain of unknown function (DUF4158) CAI17_09980 PF01526 Tn3 transposase DDE domain CAI17_10000 PF05649 Peptidase family M13 CAI17_10000 PF01431 Peptidase family M13 CAI17_10010 PF05649 Peptidase family M13 CAI17_10010 PF01431 Peptidase family M13 CAI17_10025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CAI17_10035 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_10035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI17_10040 PF01266 FAD dependent oxidoreductase CAI17_10045 PF04235 Protein of unknown function (DUF418) CAI17_10050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI17_10055 PF00877 NlpC/P60 family CAI17_10060 PF00877 NlpC/P60 family CAI17_10075 PF00375 Sodium:dicarboxylate symporter family CAI17_10080 PF00245 Alkaline phosphatase CAI17_10090 PF09179 TilS substrate binding domain CAI17_10090 PF11734 TilS substrate C-terminal domain CAI17_10090 PF01171 PP-loop family CAI17_10095 PF02609 Exonuclease VII small subunit CAI17_10100 PF00348 Polyprenyl synthetase CAI17_10110 PF00239 Resolvase, N terminal domain CAI17_10110 PF02796 Helix-turn-helix domain of resolvase CAI17_10130 PF02810 SEC-C motif CAI17_10130 PF03695 Uncharacterised protein family (UPF0149) CAI17_10145 PF01523 Putative modulator of DNA gyrase CAI17_10150 PF04751 Protein of unknown function (DUF615) CAI17_10155 PF01523 Putative modulator of DNA gyrase CAI17_10165 PF13116 Protein of unknown function CAI17_10165 PF13502 AsmA-like C-terminal region CAI17_10170 PF10150 Ribonuclease E/G family CAI17_10170 PF00575 S1 RNA binding domain CAI17_10175 PF02545 Maf-like protein CAI17_10180 PF04402 Protein of unknown function (DUF541) CAI17_10200 PF02590 Predicted SPOUT methyltransferase CAI17_10215 PF01467 Cytidylyltransferase-like CAI17_10230 PF00133 tRNA synthetases class I (I, L, M and V) CAI17_10230 PF08264 Anticodon-binding domain of tRNA CAI17_10230 PF13603 Leucyl-tRNA synthetase, Domain 2 CAI17_10240 PF00085 Thioredoxin CAI17_10280 PF04070 Domain of unknown function (DUF378) CAI17_10285 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CAI17_10325 PF00664 ABC transporter transmembrane region CAI17_10325 PF00005 ABC transporter CAI17_10340 PF00873 AcrB/AcrD/AcrF family CAI17_10355 PF02321 Outer membrane efflux protein CAI17_10360 PF00072 Response regulator receiver domain CAI17_10360 PF00486 Transcriptional regulatory protein, C terminal CAI17_10365 PF00672 HAMP domain CAI17_10365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_10365 PF00512 His Kinase A (phospho-acceptor) domain CAI17_10370 PF00999 Sodium/hydrogen exchanger family CAI17_10375 PF00144 Beta-lactamase CAI17_10380 PF03737 Aldolase/RraA CAI17_10400 PF00072 Response regulator receiver domain CAI17_10400 PF00990 Diguanylate cyclase, GGDEF domain CAI17_10405 PF01479 S4 domain CAI17_10405 PF00849 RNA pseudouridylate synthase CAI17_10410 PF00990 Diguanylate cyclase, GGDEF domain CAI17_10410 PF00563 EAL domain CAI17_10410 PF08448 PAS fold CAI17_10415 PF03880 DbpA RNA binding domain CAI17_10415 PF00270 DEAD/DEAH box helicase CAI17_10415 PF00271 Helicase conserved C-terminal domain CAI17_10465 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CAI17_10465 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CAI17_10475 PF00654 Voltage gated chloride channel CAI17_10500 PF00593 TonB dependent receptor CAI17_10500 PF07715 TonB-dependent Receptor Plug Domain CAI17_10510 PF01483 Proprotein convertase P-domain CAI17_10510 PF00082 Subtilase family CAI17_10520 PF00082 Subtilase family CAI17_10520 PF01483 Proprotein convertase P-domain CAI17_10545 PF07690 Major Facilitator Superfamily CAI17_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_10550 PF03466 LysR substrate binding domain CAI17_10575 PF02321 Outer membrane efflux protein CAI17_10580 PF00873 AcrB/AcrD/AcrF family CAI17_10585 PF00529 HlyD membrane-fusion protein of T1SS CAI17_10585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_10595 PF01475 Ferric uptake regulator family CAI17_10600 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI17_10625 PF06123 Inner membrane protein CreD CAI17_10635 PF01790 Prolipoprotein diacylglyceryl transferase CAI17_10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_10640 PF00672 HAMP domain CAI17_10640 PF00512 His Kinase A (phospho-acceptor) domain CAI17_10650 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CAI17_10660 PF17757 UvrB interaction domain CAI17_10660 PF03461 TRCF domain CAI17_10660 PF00271 Helicase conserved C-terminal domain CAI17_10660 PF00270 DEAD/DEAH box helicase CAI17_10660 PF02559 CarD-like/TRCF domain CAI17_10675 PF09078 CheY binding CAI17_10675 PF02895 Signal transducing histidine kinase, homodimeric domain CAI17_10675 PF01584 CheW-like domain CAI17_10675 PF01627 Hpt domain CAI17_10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_10680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_10680 PF00672 HAMP domain CAI17_10680 PF02203 Tar ligand binding domain homologue CAI17_10685 PF01584 CheW-like domain CAI17_10690 PF00563 EAL domain CAI17_10690 PF00990 Diguanylate cyclase, GGDEF domain CAI17_10690 PF13426 PAS domain CAI17_10695 PF01739 CheR methyltransferase, SAM binding domain CAI17_10695 PF03705 CheR methyltransferase, all-alpha domain CAI17_10700 PF00072 Response regulator receiver domain CAI17_10700 PF01339 CheB methylesterase CAI17_10705 PF13091 PLD-like domain CAI17_10720 PF01219 Prokaryotic diacylglycerol kinase CAI17_10740 PF08521 Two-component sensor kinase N-terminal CAI17_10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_10740 PF00512 His Kinase A (phospho-acceptor) domain CAI17_10745 PF00072 Response regulator receiver domain CAI17_10745 PF00486 Transcriptional regulatory protein, C terminal CAI17_10750 PF13472 GDSL-like Lipase/Acylhydrolase family CAI17_10755 PF00005 ABC transporter CAI17_10765 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CAI17_10775 PF00005 ABC transporter CAI17_10780 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_10800 PF07715 TonB-dependent Receptor Plug Domain CAI17_10800 PF00593 TonB dependent receptor CAI17_10810 PF00248 Aldo/keto reductase family CAI17_10820 PF07670 Nucleoside recognition CAI17_10820 PF01773 Na+ dependent nucleoside transporter N-terminus CAI17_10820 PF07662 Na+ dependent nucleoside transporter C-terminus CAI17_10825 PF00294 pfkB family carbohydrate kinase CAI17_10835 PF01207 Dihydrouridine synthase (Dus) CAI17_10840 PF13649 Methyltransferase domain CAI17_10850 PF02773 S-adenosylmethionine synthetase, C-terminal domain CAI17_10850 PF02772 S-adenosylmethionine synthetase, central domain CAI17_10850 PF00438 S-adenosylmethionine synthetase, N-terminal domain CAI17_10855 PF00328 Histidine phosphatase superfamily (branch 2) CAI17_10900 PF00311 Phosphoenolpyruvate carboxylase CAI17_10910 PF05221 S-adenosyl-L-homocysteine hydrolase CAI17_10910 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CAI17_10915 PF13649 Methyltransferase domain CAI17_10925 PF00685 Sulfotransferase domain CAI17_10950 PF00128 Alpha amylase, catalytic domain CAI17_10955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CAI17_10975 PF09286 Pro-kumamolisin, activation domain CAI17_10975 PF00082 Subtilase family CAI17_10980 PF00698 Acyl transferase domain CAI17_10980 PF08659 KR domain CAI17_10980 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI17_10980 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_10980 PF00107 Zinc-binding dehydrogenase CAI17_10980 PF16197 Ketoacyl-synthetase C-terminal extension CAI17_10980 PF14765 Polyketide synthase dehydratase CAI17_10980 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI17_10980 PF00550 Phosphopantetheine attachment site CAI17_10995 PF02219 Methylenetetrahydrofolate reductase CAI17_11005 PF00293 NUDIX domain CAI17_11010 PF07516 SecA Wing and Scaffold domain CAI17_11010 PF01043 SecA preprotein cross-linking domain CAI17_11010 PF07517 SecA DEAD-like domain CAI17_11010 PF02810 SEC-C motif CAI17_11025 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CAI17_11030 PF00091 Tubulin/FtsZ family, GTPase domain CAI17_11030 PF12327 FtsZ family, C-terminal domain CAI17_11035 PF02491 SHS2 domain inserted in FTSA CAI17_11040 PF03799 Cell division protein FtsQ CAI17_11040 PF08478 POTRA domain, FtsQ-type CAI17_11045 PF07478 D-ala D-ala ligase C-terminus CAI17_11045 PF01820 D-ala D-ala ligase N-terminus CAI17_11050 PF01225 Mur ligase family, catalytic domain CAI17_11050 PF02875 Mur ligase family, glutamate ligase domain CAI17_11050 PF08245 Mur ligase middle domain CAI17_11055 PF04101 Glycosyltransferase family 28 C-terminal domain CAI17_11055 PF03033 Glycosyltransferase family 28 N-terminal domain CAI17_11060 PF01098 Cell cycle protein CAI17_11065 PF00953 Glycosyl transferase family 4 CAI17_11070 PF02875 Mur ligase family, glutamate ligase domain CAI17_11070 PF01225 Mur ligase family, catalytic domain CAI17_11070 PF08245 Mur ligase middle domain CAI17_11075 PF08245 Mur ligase middle domain CAI17_11075 PF02875 Mur ligase family, glutamate ligase domain CAI17_11075 PF01225 Mur ligase family, catalytic domain CAI17_11080 PF00905 Penicillin binding protein transpeptidase domain CAI17_11080 PF03717 Penicillin-binding Protein dimerisation domain CAI17_11085 PF04999 Cell division protein FtsL CAI17_11090 PF01795 MraW methylase family CAI17_11095 PF02381 MraZ protein, putative antitoxin-like CAI17_11120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CAI17_11130 PF02021 Uncharacterised protein family UPF0102 CAI17_11135 PF04307 LexA-binding, inner membrane-associated putative hydrolase CAI17_11140 PF01565 FAD binding domain CAI17_11140 PF02913 FAD linked oxidases, C-terminal domain CAI17_11170 PF00486 Transcriptional regulatory protein, C terminal CAI17_11170 PF00072 Response regulator receiver domain CAI17_11175 PF02702 Osmosensitive K+ channel His kinase sensor domain CAI17_11175 PF00512 His Kinase A (phospho-acceptor) domain CAI17_11175 PF13493 Domain of unknown function (DUF4118) CAI17_11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_11175 PF13492 GAF domain CAI17_11180 PF02669 K+-transporting ATPase, c chain CAI17_11190 PF03814 Potassium-transporting ATPase A subunit CAI17_11215 PF02769 AIR synthase related protein, C-terminal domain CAI17_11215 PF00586 AIR synthase related protein, N-terminal domain CAI17_11220 PF01029 NusB family CAI17_11225 PF00885 6,7-dimethyl-8-ribityllumazine synthase CAI17_11230 PF00925 GTP cyclohydrolase II CAI17_11230 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CAI17_11235 PF00677 Lumazine binding domain CAI17_11245 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CAI17_11245 PF01872 RibD C-terminal domain CAI17_11255 PF03477 ATP cone domain CAI17_11260 PF00464 Serine hydroxymethyltransferase CAI17_11270 PF12848 ABC transporter CAI17_11270 PF00005 ABC transporter CAI17_11280 PF00892 EamA-like transporter family CAI17_11285 PF02567 Phenazine biosynthesis-like protein CAI17_11290 PF00155 Aminotransferase class I and II CAI17_11290 PF00392 Bacterial regulatory proteins, gntR family CAI17_11300 PF00756 Putative esterase CAI17_11305 PF04828 Glutathione-dependent formaldehyde-activating enzyme CAI17_11310 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_11310 PF00107 Zinc-binding dehydrogenase CAI17_11315 PF02583 Metal-sensitive transcriptional repressor CAI17_11330 PF00072 Response regulator receiver domain CAI17_11330 PF00486 Transcriptional regulatory protein, C terminal CAI17_11335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_11335 PF00672 HAMP domain CAI17_11335 PF00512 His Kinase A (phospho-acceptor) domain CAI17_11340 PF04107 Glutamate-cysteine ligase family 2(GCS2) CAI17_11355 PF10996 Beta-Casp domain CAI17_11355 PF00753 Metallo-beta-lactamase superfamily CAI17_11355 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CAI17_11360 PF01926 50S ribosome-binding GTPase CAI17_11365 PF00034 Cytochrome c CAI17_11390 PF02028 BCCT, betaine/carnitine/choline family transporter CAI17_11395 PF00171 Aldehyde dehydrogenase family CAI17_11400 PF00732 GMC oxidoreductase CAI17_11400 PF05199 GMC oxidoreductase CAI17_11405 PF12627 Probable RNA and SrmB- binding site of polymerase A CAI17_11405 PF01743 Poly A polymerase head domain CAI17_11405 PF01966 HD domain CAI17_11415 PF01979 Amidohydrolase family CAI17_11420 PF01380 SIS domain CAI17_11425 PF00356 Bacterial regulatory proteins, lacI family CAI17_11430 PF07690 Major Facilitator Superfamily CAI17_11435 PF00392 Bacterial regulatory proteins, gntR family CAI17_11435 PF07702 UTRA domain CAI17_11450 PF16355 Domain of unknown function (DUF4982) CAI17_11450 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CAI17_11450 PF00703 Glycosyl hydrolases family 2 CAI17_11450 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CAI17_11450 PF02837 Glycosyl hydrolases family 2, sugar binding domain CAI17_11475 PF03934 Type II secretion system (T2SS), protein K CAI17_11480 PF11612 Type II secretion system (T2SS), protein J CAI17_11480 PF07963 Prokaryotic N-terminal methylation motif CAI17_11485 PF02501 Type II secretion system (T2SS), protein I CAI17_11485 PF07963 Prokaryotic N-terminal methylation motif CAI17_11490 PF12019 Type II transport protein GspH CAI17_11490 PF07963 Prokaryotic N-terminal methylation motif CAI17_11495 PF08334 Type II secretion system (T2SS), protein G CAI17_11495 PF07963 Prokaryotic N-terminal methylation motif CAI17_11500 PF00482 Type II secretion system (T2SS), protein F CAI17_11505 PF00437 Type II/IV secretion system protein CAI17_11510 PF00263 Bacterial type II and III secretion system protein CAI17_11510 PF03958 Bacterial type II/III secretion system short domain CAI17_11555 PF00106 short chain dehydrogenase CAI17_11560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CAI17_11565 PF00512 His Kinase A (phospho-acceptor) domain CAI17_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_11570 PF00072 Response regulator receiver domain CAI17_11575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_11575 PF08446 PAS fold CAI17_11575 PF00512 His Kinase A (phospho-acceptor) domain CAI17_11575 PF00360 Phytochrome region CAI17_11575 PF01590 GAF domain CAI17_11580 PF04972 BON domain CAI17_11585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CAI17_11585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CAI17_11590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CAI17_11590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CAI17_11625 PF01467 Cytidylyltransferase-like CAI17_11625 PF00293 NUDIX domain CAI17_11635 PF03466 LysR substrate binding domain CAI17_11635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_11645 PF17804 Tail specific protease N-terminal domain CAI17_11645 PF03572 Peptidase family S41 CAI17_11645 PF00595 PDZ domain CAI17_11645 PF11818 C-terminal domain of tail specific protease (DUF3340) CAI17_11650 PF04055 Radical SAM superfamily CAI17_11650 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CAI17_11655 PF03099 Biotin/lipoate A/B protein ligase family CAI17_11660 PF04359 Protein of unknown function (DUF493) CAI17_11670 PF00768 D-alanyl-D-alanine carboxypeptidase CAI17_11670 PF07943 Penicillin-binding protein 5, C-terminal domain CAI17_11680 PF05036 Sporulation related domain CAI17_11680 PF03330 Lytic transglycolase CAI17_11685 PF13406 Transglycosylase SLT domain CAI17_11690 PF00295 Glycosyl hydrolases family 28 CAI17_11695 PF01098 Cell cycle protein CAI17_11700 PF00905 Penicillin binding protein transpeptidase domain CAI17_11700 PF03717 Penicillin-binding Protein dimerisation domain CAI17_11710 PF04085 rod shape-determining protein MreC CAI17_11720 PF00294 pfkB family carbohydrate kinase CAI17_11725 PF00158 Sigma-54 interaction domain CAI17_11725 PF02954 Bacterial regulatory protein, Fis family CAI17_11725 PF01590 GAF domain CAI17_11735 PF00107 Zinc-binding dehydrogenase CAI17_11735 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_11745 PF00034 Cytochrome c CAI17_11745 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CAI17_11745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CAI17_11800 PF05598 Transposase domain (DUF772) CAI17_11840 PF16736 Single Cache-like CAI17_11840 PF00512 His Kinase A (phospho-acceptor) domain CAI17_11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_11840 PF00989 PAS fold CAI17_11845 PF00486 Transcriptional regulatory protein, C terminal CAI17_11845 PF00072 Response regulator receiver domain CAI17_11855 PF18030 RimK PreATP-grasp domain CAI17_11855 PF08443 RimK-like ATP-grasp domain CAI17_11860 PF00128 Alpha amylase, catalytic domain CAI17_11860 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI17_11900 PF05690 Thiazole biosynthesis protein ThiG CAI17_11910 PF02390 Putative methyltransferase CAI17_11915 PF03600 Citrate transporter CAI17_11915 PF02080 TrkA-C domain CAI17_11935 PF01557 Fumarylacetoacetate (FAA) hydrolase family CAI17_11940 PF01741 Large-conductance mechanosensitive channel, MscL CAI17_11950 PF00356 Bacterial regulatory proteins, lacI family CAI17_11960 PF00703 Glycosyl hydrolases family 2 CAI17_11960 PF02837 Glycosyl hydrolases family 2, sugar binding domain CAI17_11960 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain CAI17_11965 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CAI17_11965 PF14508 Glycosyl-hydrolase 97 N-terminal CAI17_11965 PF10566 Glycoside hydrolase 97 CAI17_11975 PF00135 Carboxylesterase family CAI17_11980 PF08032 RNA 2'-O ribose methyltransferase substrate binding CAI17_11980 PF00588 SpoU rRNA Methylase family CAI17_12030 PF00873 AcrB/AcrD/AcrF family CAI17_12035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_12035 PF00529 HlyD membrane-fusion protein of T1SS CAI17_12040 PF00009 Elongation factor Tu GTP binding domain CAI17_12045 PF01507 Phosphoadenosine phosphosulfate reductase family CAI17_12050 PF00667 FAD binding domain CAI17_12050 PF00258 Flavodoxin CAI17_12050 PF00175 Oxidoreductase NAD-binding domain CAI17_12055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CAI17_12055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CAI17_12060 PF01507 Phosphoadenosine phosphosulfate reductase family CAI17_12080 PF01627 Hpt domain CAI17_12080 PF00512 His Kinase A (phospho-acceptor) domain CAI17_12080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_12080 PF00072 Response regulator receiver domain CAI17_12095 PF03466 LysR substrate binding domain CAI17_12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_12100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CAI17_12100 PF14824 Sirohaem biosynthesis protein central CAI17_12100 PF10414 Sirohaem synthase dimerisation region CAI17_12105 PF00291 Pyridoxal-phosphate dependent enzyme CAI17_12115 PF01661 Macro domain CAI17_12120 PF00274 Fructose-bisphosphate aldolase class-I CAI17_12130 PF02887 Pyruvate kinase, alpha/beta domain CAI17_12130 PF00224 Pyruvate kinase, barrel domain CAI17_12140 PF00162 Phosphoglycerate kinase CAI17_12165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CAI17_12165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CAI17_12180 PF03922 OmpW family CAI17_12185 PF03922 OmpW family CAI17_12195 PF04273 Putative phosphatase (DUF442) CAI17_12195 PF00753 Metallo-beta-lactamase superfamily CAI17_12205 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_12210 PF00005 ABC transporter CAI17_12210 PF03459 TOBE domain CAI17_12245 PF03734 L,D-transpeptidase catalytic domain CAI17_12245 PF01476 LysM domain CAI17_12255 PF04225 Opacity-associated protein A LysM-like domain CAI17_12255 PF01551 Peptidase family M23 CAI17_12265 PF07715 TonB-dependent Receptor Plug Domain CAI17_12265 PF00593 TonB dependent receptor CAI17_12270 PF12146 Serine aminopeptidase, S33 CAI17_12275 PF02779 Transketolase, pyrimidine binding domain CAI17_12275 PF00456 Transketolase, thiamine diphosphate binding domain CAI17_12275 PF02780 Transketolase, C-terminal domain CAI17_12280 PF00375 Sodium:dicarboxylate symporter family CAI17_12295 PF00092 von Willebrand factor type A domain CAI17_12295 PF07584 Aerotolerance regulator N-terminal CAI17_12315 PF07726 ATPase family associated with various cellular activities (AAA) CAI17_12315 PF17863 AAA lid domain CAI17_12345 PF17092 Penicillin-binding protein OB-like domain CAI17_12345 PF00905 Penicillin binding protein transpeptidase domain CAI17_12345 PF00912 Transglycosylase CAI17_12360 PF00285 Citrate synthase, C-terminal domain CAI17_12365 PF01197 Ribosomal protein L31 CAI17_12370 PF01156 Inosine-uridine preferring nucleoside hydrolase CAI17_12375 PF00271 Helicase conserved C-terminal domain CAI17_12375 PF00270 DEAD/DEAH box helicase CAI17_12375 PF17191 RecG wedge domain CAI17_12380 PF01042 Endoribonuclease L-PSP CAI17_12385 PF13291 ACT domain CAI17_12385 PF02824 TGS domain CAI17_12385 PF04607 Region found in RelA / SpoT proteins CAI17_12390 PF13419 Haloacid dehalogenase-like hydrolase CAI17_12395 PF04198 Putative sugar-binding domain CAI17_12410 PF04966 Carbohydrate-selective porin, OprB family CAI17_12415 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_12420 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_12425 PF08402 TOBE domain CAI17_12425 PF00005 ABC transporter CAI17_12435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CAI17_12435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CAI17_12440 PF01192 RNA polymerase Rpb6 CAI17_12445 PF00625 Guanylate kinase CAI17_12450 PF03755 YicC-like family, N-terminal region CAI17_12450 PF08340 Domain of unknown function (DUF1732) CAI17_12455 PF03725 3' exoribonuclease family, domain 2 CAI17_12455 PF01138 3' exoribonuclease family, domain 1 CAI17_12465 PF01725 Ham1 family CAI17_12470 PF04055 Radical SAM superfamily CAI17_12470 PF06969 HemN C-terminal domain CAI17_12485 PF00557 Metallopeptidase family M24 CAI17_12495 PF05195 Aminopeptidase P, N-terminal domain CAI17_12495 PF00557 Metallopeptidase family M24 CAI17_12500 PF03695 Uncharacterised protein family (UPF0149) CAI17_12510 PF05164 Cell division protein ZapA CAI17_12520 PF01812 5-formyltetrahydrofolate cyclo-ligase family CAI17_12530 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CAI17_12540 PF13369 Transglutaminase-like superfamily CAI17_12545 PF00301 Rubredoxin CAI17_12550 PF02581 Thiamine monophosphate synthase CAI17_12565 PF00202 Aminotransferase class-III CAI17_12570 PF00196 Bacterial regulatory proteins, luxR family CAI17_12570 PF17874 MalT-like TPR region CAI17_12575 PF00127 Copper binding proteins, plastocyanin/azurin family CAI17_12580 PF00155 Aminotransferase class I and II CAI17_12590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CAI17_12590 PF00034 Cytochrome c CAI17_12595 PF01593 Flavin containing amine oxidoreductase CAI17_12610 PF00202 Aminotransferase class-III CAI17_12615 PF00520 Ion transport protein CAI17_12615 PF00027 Cyclic nucleotide-binding domain CAI17_12635 PF01569 PAP2 superfamily CAI17_12640 PF01062 Bestrophin, RFP-TM, chloride channel CAI17_12650 PF01225 Mur ligase family, catalytic domain CAI17_12650 PF02875 Mur ligase family, glutamate ligase domain CAI17_12650 PF08245 Mur ligase middle domain CAI17_12680 PF03030 Inorganic H+ pyrophosphatase CAI17_12690 PF00719 Inorganic pyrophosphatase CAI17_12715 PF12833 Helix-turn-helix domain CAI17_12720 PF00486 Transcriptional regulatory protein, C terminal CAI17_12720 PF18500 CadC C-terminal domain 1 CAI17_12725 PF13667 ThiC-associated domain CAI17_12725 PF01964 Radical SAM ThiC family CAI17_12735 PF00593 TonB dependent receptor CAI17_12735 PF07715 TonB-dependent Receptor Plug Domain CAI17_12740 PF00672 HAMP domain CAI17_12740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_12740 PF02203 Tar ligand binding domain homologue CAI17_12750 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CAI17_12750 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CAI17_12755 PF00205 Thiamine pyrophosphate enzyme, central domain CAI17_12755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CAI17_12755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CAI17_12765 PF00291 Pyridoxal-phosphate dependent enzyme CAI17_12770 PF00682 HMGL-like CAI17_12770 PF08502 LeuA allosteric (dimerisation) domain CAI17_12775 PF00180 Isocitrate/isopropylmalate dehydrogenase CAI17_12780 PF00694 Aconitase C-terminal domain CAI17_12785 PF00330 Aconitase family (aconitate hydratase) CAI17_12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_12795 PF17151 Periplasmic sensor domain CAI17_12795 PF00990 Diguanylate cyclase, GGDEF domain CAI17_12810 PF02321 Outer membrane efflux protein CAI17_12815 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CAI17_12820 PF03279 Bacterial lipid A biosynthesis acyltransferase CAI17_12845 PF01515 Phosphate acetyl/butaryl transferase CAI17_12845 PF03949 Malic enzyme, NAD binding domain CAI17_12845 PF00390 Malic enzyme, N-terminal domain CAI17_12850 PF00375 Sodium:dicarboxylate symporter family CAI17_12860 PF02743 Cache domain CAI17_12860 PF00512 His Kinase A (phospho-acceptor) domain CAI17_12860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_12870 PF07690 Major Facilitator Superfamily CAI17_12880 PF03466 LysR substrate binding domain CAI17_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_12890 PF00248 Aldo/keto reductase family CAI17_12910 PF00196 Bacterial regulatory proteins, luxR family CAI17_12910 PF00072 Response regulator receiver domain CAI17_12925 PF00512 His Kinase A (phospho-acceptor) domain CAI17_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_12925 PF08521 Two-component sensor kinase N-terminal CAI17_12930 PF00486 Transcriptional regulatory protein, C terminal CAI17_12930 PF00072 Response regulator receiver domain CAI17_12945 PF03600 Citrate transporter CAI17_12950 PF00106 short chain dehydrogenase CAI17_12955 PF00356 Bacterial regulatory proteins, lacI family CAI17_12970 PF00128 Alpha amylase, catalytic domain CAI17_12985 PF03193 RsgA GTPase CAI17_13020 PF01433 Peptidase family M1 domain CAI17_13020 PF11838 ERAP1-like C-terminal domain CAI17_13025 PF17156 Gammaproteobacterial periplasmic sensor domain CAI17_13025 PF00990 Diguanylate cyclase, GGDEF domain CAI17_13030 PF01209 ubiE/COQ5 methyltransferase family CAI17_13040 PF13533 Biotin-lipoyl like CAI17_13045 PF13673 Acetyltransferase (GNAT) domain CAI17_13055 PF10431 C-terminal, D2-small domain, of ClpB protein CAI17_13055 PF07724 AAA domain (Cdc48 subfamily) CAI17_13055 PF00004 ATPase family associated with various cellular activities (AAA) CAI17_13060 PF00227 Proteasome subunit CAI17_13065 PF02899 Phage integrase, N-terminal SAM-like domain CAI17_13065 PF00589 Phage integrase family CAI17_13075 PF01678 Diaminopimelate epimerase CAI17_13085 PF04304 Protein of unknown function (DUF454) CAI17_13090 PF00326 Prolyl oligopeptidase family CAI17_13090 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CAI17_13095 PF00155 Aminotransferase class I and II CAI17_13105 PF00326 Prolyl oligopeptidase family CAI17_13105 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CAI17_13145 PF03900 Porphobilinogen deaminase, C-terminal domain CAI17_13145 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CAI17_13150 PF00072 Response regulator receiver domain CAI17_13150 PF04397 LytTr DNA-binding domain CAI17_13155 PF07694 5TMR of 5TMR-LYT CAI17_13155 PF06580 Histidine kinase CAI17_13165 PF13632 Glycosyl transferase family group 2 CAI17_13185 PF00990 Diguanylate cyclase, GGDEF domain CAI17_13185 PF08448 PAS fold CAI17_13195 PF00916 Sulfate permease family CAI17_13195 PF01740 STAS domain CAI17_13200 PF00553 Cellulose binding domain CAI17_13200 PF00150 Cellulase (glycosyl hydrolase family 5) CAI17_13205 PF02203 Tar ligand binding domain homologue CAI17_13205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_13205 PF00672 HAMP domain CAI17_13215 PF08447 PAS fold CAI17_13215 PF00563 EAL domain CAI17_13215 PF08448 PAS fold CAI17_13215 PF00990 Diguanylate cyclase, GGDEF domain CAI17_13265 PF01204 Trehalase CAI17_13275 PF01544 CorA-like Mg2+ transporter protein CAI17_13285 PF00324 Amino acid permease CAI17_13295 PF00497 Bacterial extracellular solute-binding proteins, family 3 CAI17_13300 PF00892 EamA-like transporter family CAI17_13325 PF05230 MASE2 domain CAI17_13325 PF00990 Diguanylate cyclase, GGDEF domain CAI17_13335 PF07759 Protein of unknown function (DUF1615) CAI17_13345 PF00326 Prolyl oligopeptidase family CAI17_13345 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CAI17_13355 PF03176 MMPL family CAI17_13355 PF12823 Domain of unknown function (DUF3817) CAI17_13380 PF13409 Glutathione S-transferase, N-terminal domain CAI17_13395 PF00106 short chain dehydrogenase CAI17_13410 PF00106 short chain dehydrogenase CAI17_13445 PF17831 Pyruvate dehydrogenase E1 component middle domain CAI17_13445 PF00456 Transketolase, thiamine diphosphate binding domain CAI17_13450 PF07745 Glycosyl hydrolase family 53 CAI17_13480 PF13419 Haloacid dehalogenase-like hydrolase CAI17_13485 PF00392 Bacterial regulatory proteins, gntR family CAI17_13485 PF07729 FCD domain CAI17_13505 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CAI17_13515 PF01039 Carboxyl transferase domain CAI17_13520 PF06857 Malonate decarboxylase delta subunit (MdcD) CAI17_13525 PF16957 Malonate decarboxylase, alpha subunit, transporter CAI17_13550 PF04264 YceI-like domain CAI17_13555 PF00881 Nitroreductase family CAI17_13575 PF02592 Putative vitamin uptake transporter CAI17_13580 PF03710 Glutamate-ammonia ligase adenylyltransferase CAI17_13580 PF08335 GlnD PII-uridylyltransferase CAI17_13590 PF08450 SMP-30/Gluconolactonase/LRE-like region CAI17_13605 PF00793 DAHP synthetase I family CAI17_13610 PF00593 TonB dependent receptor CAI17_13610 PF07715 TonB-dependent Receptor Plug Domain CAI17_13620 PF00118 TCP-1/cpn60 chaperonin family CAI17_13625 PF00166 Chaperonin 10 Kd subunit CAI17_13630 PF04231 Endonuclease I CAI17_13640 PF00106 short chain dehydrogenase CAI17_13655 PF01852 START domain CAI17_13670 PF03091 CutA1 divalent ion tolerance protein CAI17_13675 PF02683 Cytochrome C biogenesis protein transmembrane region CAI17_13675 PF11412 Disulphide bond corrector protein DsbC CAI17_13680 PF01220 Dehydroquinase class II CAI17_13685 PF00364 Biotin-requiring enzyme CAI17_13695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI17_13695 PF00289 Biotin carboxylase, N-terminal domain CAI17_13695 PF02785 Biotin carboxylase C-terminal domain CAI17_13725 PF01381 Helix-turn-helix CAI17_13740 PF02954 Bacterial regulatory protein, Fis family CAI17_13770 PF00782 Dual specificity phosphatase, catalytic domain CAI17_13775 PF12146 Serine aminopeptidase, S33 CAI17_13775 PF12147 Putative methyltransferase CAI17_13780 PF01066 CDP-alcohol phosphatidyltransferase CAI17_13785 PF01808 AICARFT/IMPCHase bienzyme CAI17_13785 PF02142 MGS-like domain CAI17_13795 PF02844 Phosphoribosylglycinamide synthetase, N domain CAI17_13795 PF02843 Phosphoribosylglycinamide synthetase, C domain CAI17_13795 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CAI17_13805 PF12805 FUSC-like inner membrane protein yccS CAI17_13810 PF07690 Major Facilitator Superfamily CAI17_13815 PF03466 LysR substrate binding domain CAI17_13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_13820 PF07690 Major Facilitator Superfamily CAI17_13840 PF17113 Regulatory signalling modulator protein AmpE CAI17_13840 PF03186 CobD/Cbib protein CAI17_13845 PF09297 NADH pyrophosphatase zinc ribbon domain CAI17_13845 PF00293 NUDIX domain CAI17_13845 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CAI17_13860 PF01521 Iron-sulphur cluster biosynthesis CAI17_13880 PF00072 Response regulator receiver domain CAI17_13880 PF00486 Transcriptional regulatory protein, C terminal CAI17_13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_13885 PF00512 His Kinase A (phospho-acceptor) domain CAI17_13885 PF00672 HAMP domain CAI17_13885 PF01627 Hpt domain CAI17_13885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI17_13885 PF00072 Response regulator receiver domain CAI17_13890 PF00210 Ferritin-like domain CAI17_13900 PF00293 NUDIX domain CAI17_13915 PF00380 Ribosomal protein S9/S16 CAI17_13920 PF00572 Ribosomal protein L13 CAI17_13925 PF03232 Ubiquinone biosynthesis protein COQ7 CAI17_13930 PF00893 Small Multidrug Resistance protein CAI17_13935 PF02675 S-adenosylmethionine decarboxylase CAI17_13940 PF00027 Cyclic nucleotide-binding domain CAI17_13940 PF00325 Bacterial regulatory proteins, crp family CAI17_13950 PF00218 Indole-3-glycerol phosphate synthase CAI17_13955 PF02885 Glycosyl transferase family, helical bundle domain CAI17_13955 PF00591 Glycosyl transferase family, a/b domain CAI17_13965 PF00117 Glutamine amidotransferase class-I CAI17_13975 PF04715 Anthranilate synthase component I, N terminal region CAI17_13975 PF00425 chorismate binding enzyme CAI17_13980 PF00781 Diacylglycerol kinase catalytic domain CAI17_13985 PF00583 Acetyltransferase (GNAT) family CAI17_13990 PF00834 Ribulose-phosphate 3 epimerase family CAI17_14000 PF00226 DnaJ domain CAI17_14000 PF05099 Tellurite resistance protein TerB CAI17_14005 PF01259 SAICAR synthetase CAI17_14025 PF00182 Chitinase class I CAI17_14035 PF07504 Fungalysin/Thermolysin Propeptide Motif CAI17_14035 PF01483 Proprotein convertase P-domain CAI17_14035 PF01447 Thermolysin metallopeptidase, catalytic domain CAI17_14035 PF02868 Thermolysin metallopeptidase, alpha-helical domain CAI17_14050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI17_14050 PF00361 Proton-conducting membrane transporter CAI17_14050 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CAI17_14050 PF13244 Domain of unknown function (DUF4040) CAI17_14055 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CAI17_14060 PF00361 Proton-conducting membrane transporter CAI17_14070 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CAI17_14075 PF03334 Na+/H+ antiporter subunit CAI17_14095 PF04209 homogentisate 1,2-dioxygenase CAI17_14105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CAI17_14110 PF01047 MarR family CAI17_14120 PF00854 POT family CAI17_14125 PF03301 Tryptophan 2,3-dioxygenase CAI17_14140 PF00676 Dehydrogenase E1 component CAI17_14145 PF02779 Transketolase, pyrimidine binding domain CAI17_14145 PF02780 Transketolase, C-terminal domain CAI17_14155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI17_14155 PF02817 e3 binding domain CAI17_14155 PF00364 Biotin-requiring enzyme CAI17_14160 PF00271 Helicase conserved C-terminal domain CAI17_14160 PF00270 DEAD/DEAH box helicase CAI17_14180 PF00873 AcrB/AcrD/AcrF family CAI17_14195 PF02321 Outer membrane efflux protein CAI17_14200 PF06903 VirK protein CAI17_14220 PF13460 NAD(P)H-binding CAI17_14225 PF00128 Alpha amylase, catalytic domain CAI17_14225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI17_14235 PF00128 Alpha amylase, catalytic domain CAI17_14240 PF02446 4-alpha-glucanotransferase CAI17_14245 PF00128 Alpha amylase, catalytic domain CAI17_14245 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI17_14245 PF11941 Domain of unknown function (DUF3459) CAI17_14250 PF02806 Alpha amylase, C-terminal all-beta domain CAI17_14250 PF00128 Alpha amylase, catalytic domain CAI17_14250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI17_14255 PF08323 Starch synthase catalytic domain CAI17_14255 PF00534 Glycosyl transferases group 1 CAI17_14260 PF00990 Diguanylate cyclase, GGDEF domain CAI17_14260 PF00072 Response regulator receiver domain CAI17_14265 PF05661 Protein of unknown function (DUF808) CAI17_14270 PF03109 ABC1 family CAI17_14280 PF00884 Sulfatase CAI17_14285 PF00924 Mechanosensitive ion channel CAI17_14285 PF12795 Mechanosensitive ion channel porin domain CAI17_14285 PF12794 Mechanosensitive ion channel inner membrane domain 1 CAI17_14300 PF01464 Transglycosylase SLT domain CAI17_14310 PF00263 Bacterial type II and III secretion system protein CAI17_14310 PF03958 Bacterial type II/III secretion system short domain CAI17_14315 PF01311 Bacterial export proteins, family 1 CAI17_14325 PF18269 T3SS EscN ATPase C-terminal domain CAI17_14325 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI17_14325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI17_14340 PF01514 Secretory protein of YscJ/FliF family CAI17_14355 PF01312 FlhB HrpN YscU SpaS Family CAI17_14360 PF00771 FHIPEP family CAI17_14375 PF00813 FliP family CAI17_14380 PF01313 Bacterial export proteins, family 3 CAI17_14415 PF05819 NolX protein CAI17_14445 PF01040 UbiA prenyltransferase family CAI17_14455 PF04055 Radical SAM superfamily CAI17_14455 PF06968 Biotin and Thiamin Synthesis associated domain CAI17_14460 PF00155 Aminotransferase class I and II CAI17_14470 PF12697 Alpha/beta hydrolase family CAI17_14480 PF13649 Methyltransferase domain CAI17_14500 PF00291 Pyridoxal-phosphate dependent enzyme CAI17_14510 PF13932 GidA associated domain CAI17_14510 PF01134 Glucose inhibited division protein A CAI17_14515 PF10677 Protein of unknown function (DUF2490) CAI17_14520 PF07859 alpha/beta hydrolase fold CAI17_14530 PF01614 Bacterial transcriptional regulator CAI17_14530 PF09339 IclR helix-turn-helix domain CAI17_14540 PF02627 Carboxymuconolactone decarboxylase family CAI17_14545 PF12146 Serine aminopeptidase, S33 CAI17_14550 PF10397 Adenylosuccinate lyase C-terminus CAI17_14550 PF00206 Lyase CAI17_14560 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CAI17_14560 PF00775 Dioxygenase CAI17_14565 PF00108 Thiolase, N-terminal domain CAI17_14565 PF02803 Thiolase, C-terminal domain CAI17_14570 PF01144 Coenzyme A transferase CAI17_14575 PF01144 Coenzyme A transferase CAI17_14580 PF00355 Rieske [2Fe-2S] domain CAI17_14585 PF00970 Oxidoreductase FAD-binding domain CAI17_14585 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI17_14595 PF00455 DeoR C terminal sensor domain CAI17_14595 PF08220 DeoR-like helix-turn-helix domain CAI17_14600 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CAI17_14600 PF01266 FAD dependent oxidoreductase CAI17_14605 PF00230 Major intrinsic protein CAI17_14610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CAI17_14610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CAI17_14620 PF01494 FAD binding domain CAI17_14630 PF00171 Aldehyde dehydrogenase family CAI17_14655 PF11871 Domain of unknown function (DUF3391) CAI17_14655 PF01966 HD domain CAI17_14660 PF07690 Major Facilitator Superfamily CAI17_14670 PF00132 Bacterial transferase hexapeptide (six repeats) CAI17_14685 PF00920 Dehydratase family CAI17_14730 PF01638 HxlR-like helix-turn-helix CAI17_14735 PF05368 NmrA-like family CAI17_14750 PF03812 2-keto-3-deoxygluconate permease CAI17_14755 PF01717 Cobalamin-independent synthase, Catalytic domain CAI17_14755 PF08267 Cobalamin-independent synthase, N-terminal domain CAI17_14765 PF03358 NADPH-dependent FMN reductase CAI17_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_14770 PF03466 LysR substrate binding domain CAI17_14775 PF02677 Epoxyqueuosine reductase QueH CAI17_14790 PF02321 Outer membrane efflux protein CAI17_14795 PF00873 AcrB/AcrD/AcrF family CAI17_14800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_14800 PF00529 HlyD membrane-fusion protein of T1SS CAI17_14805 PF00512 His Kinase A (phospho-acceptor) domain CAI17_14805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_14805 PF00672 HAMP domain CAI17_14810 PF00072 Response regulator receiver domain CAI17_14810 PF00486 Transcriptional regulatory protein, C terminal CAI17_14815 PF00551 Formyl transferase CAI17_14825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CAI17_14825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CAI17_14830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CAI17_14835 PF02146 Sir2 family CAI17_14850 PF07690 Major Facilitator Superfamily CAI17_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_14855 PF03466 LysR substrate binding domain CAI17_14875 PF01026 TatD related DNase CAI17_14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_14880 PF03466 LysR substrate binding domain CAI17_14885 PF00355 Rieske [2Fe-2S] domain CAI17_14890 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI17_14900 PF00860 Permease family CAI17_14910 PF01156 Inosine-uridine preferring nucleoside hydrolase CAI17_14915 PF01425 Amidase CAI17_14930 PF07690 Major Facilitator Superfamily CAI17_14935 PF03466 LysR substrate binding domain CAI17_14935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_14940 PF07687 Peptidase dimerisation domain CAI17_14940 PF01546 Peptidase family M20/M25/M40 CAI17_14945 PF00266 Aminotransferase class-V CAI17_14960 PF01014 Uricase CAI17_14960 PF09349 OHCU decarboxylase CAI17_14965 PF13454 FAD-NAD(P)-binding CAI17_14970 PF00576 HIUase/Transthyretin family CAI17_14975 PF07308 Protein of unknown function (DUF1456) CAI17_14980 PF00271 Helicase conserved C-terminal domain CAI17_14980 PF04408 Helicase associated domain (HA2) CAI17_14980 PF00270 DEAD/DEAH box helicase CAI17_14980 PF08482 ATP-dependent helicase C-terminal CAI17_14995 PF00849 RNA pseudouridylate synthase CAI17_15005 PF00248 Aldo/keto reductase family CAI17_15010 PF00107 Zinc-binding dehydrogenase CAI17_15010 PF16884 N-terminal domain of oxidoreductase CAI17_15040 PF02566 OsmC-like protein CAI17_15045 PF01047 MarR family CAI17_15050 PF03969 AFG1-like ATPase CAI17_15070 PF07683 Cobalamin synthesis protein cobW C-terminal domain CAI17_15070 PF02492 CobW/HypB/UreG, nucleotide-binding domain CAI17_15125 PF00440 Bacterial regulatory proteins, tetR family CAI17_15125 PF17932 Tetracyclin repressor-like, C-terminal domain CAI17_15130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_15130 PF02770 Acyl-CoA dehydrogenase, middle domain CAI17_15130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_15135 PF01039 Carboxyl transferase domain CAI17_15140 PF00364 Biotin-requiring enzyme CAI17_15140 PF18140 Propionyl-coenzyme A carboxylase BT domain CAI17_15140 PF00289 Biotin carboxylase, N-terminal domain CAI17_15140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI17_15140 PF02785 Biotin carboxylase C-terminal domain CAI17_15175 PF00990 Diguanylate cyclase, GGDEF domain CAI17_15180 PF00463 Isocitrate lyase family CAI17_15185 PF01274 Malate synthase CAI17_15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_15190 PF03466 LysR substrate binding domain CAI17_15195 PF00999 Sodium/hydrogen exchanger family CAI17_15200 PF12833 Helix-turn-helix domain CAI17_15220 PF12706 Beta-lactamase superfamily domain CAI17_15225 PF01432 Peptidase family M3 CAI17_15230 PF01112 Asparaginase CAI17_15240 PF00472 RF-1 domain CAI17_15250 PF00849 RNA pseudouridylate synthase CAI17_15260 PF03109 ABC1 family CAI17_15285 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CAI17_15290 PF00501 AMP-binding enzyme CAI17_15295 PF03692 Putative zinc- or iron-chelating domain CAI17_15300 PF00561 alpha/beta hydrolase fold CAI17_15305 PF13784 Fic/DOC family N-terminal CAI17_15305 PF02661 Fic/DOC family CAI17_15310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI17_15310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI17_15325 PF00588 SpoU rRNA Methylase family CAI17_15330 PF07690 Major Facilitator Superfamily CAI17_15345 PF02954 Bacterial regulatory protein, Fis family CAI17_15345 PF00072 Response regulator receiver domain CAI17_15345 PF00158 Sigma-54 interaction domain CAI17_15350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_15355 PF00205 Thiamine pyrophosphate enzyme, central domain CAI17_15355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CAI17_15355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CAI17_15360 PF04545 Sigma-70, region 4 CAI17_15360 PF04539 Sigma-70 region 3 CAI17_15360 PF04542 Sigma-70 region 2 CAI17_15360 PF00140 Sigma-70 factor, region 1.2 CAI17_15365 PF00813 FliP family CAI17_15375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CAI17_15385 PF07559 Flagellar basal body protein FlaE CAI17_15385 PF00460 Flagella basal body rod protein CAI17_15385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_15390 PF03963 Flagellar hook capping protein - N-terminal region CAI17_15415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI17_15415 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI17_15415 PF18269 T3SS EscN ATPase C-terminal domain CAI17_15430 PF08345 Flagellar M-ring protein C-terminal CAI17_15430 PF01514 Secretory protein of YscJ/FliF family CAI17_15435 PF02049 Flagellar hook-basal body complex protein FliE CAI17_15450 PF02119 Flagellar P-ring protein CAI17_15465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_15465 PF00460 Flagella basal body rod protein CAI17_15470 PF00460 Flagella basal body rod protein CAI17_15470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI17_15475 PF00771 FHIPEP family CAI17_15480 PF01312 FlhB HrpN YscU SpaS Family CAI17_15490 PF01313 Bacterial export proteins, family 3 CAI17_15535 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CAI17_15535 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CAI17_15540 PF02556 Preprotein translocase subunit SecB CAI17_15545 PF00581 Rhodanese-like domain CAI17_15580 PF00108 Thiolase, N-terminal domain CAI17_15580 PF02803 Thiolase, C-terminal domain CAI17_15595 PF00080 Copper/zinc superoxide dismutase (SODC) CAI17_15600 PF00080 Copper/zinc superoxide dismutase (SODC) CAI17_15605 PF02954 Bacterial regulatory protein, Fis family CAI17_15605 PF00072 Response regulator receiver domain CAI17_15605 PF00158 Sigma-54 interaction domain CAI17_15610 PF00989 PAS fold CAI17_15610 PF00512 His Kinase A (phospho-acceptor) domain CAI17_15610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_15615 PF00909 Ammonium Transporter Family CAI17_15620 PF00543 Nitrogen regulatory protein P-II CAI17_15625 PF03951 Glutamine synthetase, beta-Grasp domain CAI17_15625 PF00120 Glutamine synthetase, catalytic domain CAI17_15635 PF02673 Bacitracin resistance protein BacA CAI17_15645 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_15645 PF00107 Zinc-binding dehydrogenase CAI17_15675 PF03061 Thioesterase superfamily CAI17_15680 PF13091 PLD-like domain CAI17_15695 PF01883 Iron-sulfur cluster assembly protein CAI17_15695 PF10609 NUBPL iron-transfer P-loop NTPase CAI17_15750 PF03781 Sulfatase-modifying factor enzyme 1 CAI17_15750 PF12867 DinB superfamily CAI17_15760 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_15765 PF00005 ABC transporter CAI17_15780 PF00005 ABC transporter CAI17_15790 PF01734 Patatin-like phospholipase CAI17_15795 PF07715 TonB-dependent Receptor Plug Domain CAI17_15795 PF00593 TonB dependent receptor CAI17_15795 PF07660 Secretin and TonB N terminus short domain CAI17_15800 PF01037 Lrp/AsnC ligand binding domain CAI17_15805 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CAI17_15820 PF00657 GDSL-like Lipase/Acylhydrolase CAI17_15835 PF04962 KduI/IolB family CAI17_15845 PF00356 Bacterial regulatory proteins, lacI family CAI17_15850 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI17_15850 PF04616 Glycosyl hydrolases family 43 CAI17_15855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CAI17_15865 PF03480 Bacterial extracellular solute-binding protein, family 7 CAI17_15875 PF07859 alpha/beta hydrolase fold CAI17_15875 PF13472 GDSL-like Lipase/Acylhydrolase family CAI17_15880 PF00135 Carboxylesterase family CAI17_15885 PF00248 Aldo/keto reductase family CAI17_15895 PF02806 Alpha amylase, C-terminal all-beta domain CAI17_15895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI17_15895 PF00128 Alpha amylase, catalytic domain CAI17_15900 PF16657 Maltogenic Amylase, C-terminal domain CAI17_15900 PF00128 Alpha amylase, catalytic domain CAI17_15905 PF00128 Alpha amylase, catalytic domain CAI17_15905 PF11896 Domain of unknown function (DUF3416) CAI17_15980 PF00294 pfkB family carbohydrate kinase CAI17_15990 PF12241 Trans-2-enoyl-CoA reductase catalytic region CAI17_15990 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CAI17_15990 PF07055 Enoyl reductase FAD binding domain CAI17_16020 PF00107 Zinc-binding dehydrogenase CAI17_16020 PF14765 Polyketide synthase dehydratase CAI17_16020 PF00550 Phosphopantetheine attachment site CAI17_16020 PF08659 KR domain CAI17_16020 PF00698 Acyl transferase domain CAI17_16020 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_16020 PF16197 Ketoacyl-synthetase C-terminal extension CAI17_16020 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI17_16020 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI17_16025 PF01553 Acyltransferase CAI17_16040 PF00356 Bacterial regulatory proteins, lacI family CAI17_16055 PF04820 Tryptophan halogenase CAI17_16060 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CAI17_16065 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CAI17_16075 PF04337 Protein of unknown function, DUF480 CAI17_16085 PF13302 Acetyltransferase (GNAT) domain CAI17_16090 PF00580 UvrD/REP helicase N-terminal domain CAI17_16090 PF13361 UvrD-like helicase C-terminal domain CAI17_16110 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CAI17_16110 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CAI17_16110 PF06827 Zinc finger found in FPG and IleRS CAI17_16140 PF00579 tRNA synthetases class I (W and Y) CAI17_16145 PF01551 Peptidase family M23 CAI17_16145 PF04225 Opacity-associated protein A LysM-like domain CAI17_16150 PF03702 Anhydro-N-acetylmuramic acid kinase CAI17_16160 PF07690 Major Facilitator Superfamily CAI17_16165 PF03372 Endonuclease/Exonuclease/phosphatase family CAI17_16170 PF00156 Phosphoribosyl transferase domain CAI17_16180 PF13614 AAA domain CAI17_16185 PF02195 ParB-like nuclease domain CAI17_16185 PF17762 HTH domain found in ParB protein CAI17_16200 PF01370 NAD dependent epimerase/dehydratase family CAI17_16220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI17_16220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI17_16220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI17_16220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI17_16225 PF00692 dUTPase CAI17_16230 PF02441 Flavoprotein CAI17_16230 PF04127 DNA / pantothenate metabolism flavoprotein CAI17_16235 PF04002 RadC-like JAB domain CAI17_16240 PF03485 Arginyl tRNA synthetase N terminal domain CAI17_16240 PF05746 DALR anticodon binding domain CAI17_16240 PF00750 tRNA synthetases class I (R) CAI17_16255 PF00106 short chain dehydrogenase CAI17_16260 PF01757 Acyltransferase family CAI17_16265 PF03033 Glycosyltransferase family 28 N-terminal domain CAI17_16270 PF13193 AMP-binding enzyme C-terminal domain CAI17_16270 PF00668 Condensation domain CAI17_16270 PF00550 Phosphopantetheine attachment site CAI17_16270 PF00975 Thioesterase domain CAI17_16270 PF00501 AMP-binding enzyme CAI17_16275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CAI17_16275 PF17810 Arginine decarboxylase helical bundle domain CAI17_16275 PF17944 Arginine decarboxylase C-terminal helical extension CAI17_16280 PF17284 Spermidine synthase tetramerisation domain CAI17_16325 PF00543 Nitrogen regulatory protein P-II CAI17_16330 PF04380 Membrane fusogenic activity CAI17_16335 PF01078 Magnesium chelatase, subunit ChlI CAI17_16335 PF13335 Magnesium chelatase, subunit ChlI C-terminal CAI17_16350 PF00563 EAL domain CAI17_16350 PF12792 CSS motif domain associated with EAL CAI17_16355 PF00487 Fatty acid desaturase CAI17_16360 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI17_16360 PF00970 Oxidoreductase FAD-binding domain CAI17_16360 PF00175 Oxidoreductase NAD-binding domain CAI17_16365 PF00440 Bacterial regulatory proteins, tetR family CAI17_16385 PF01139 tRNA-splicing ligase RtcB CAI17_16420 PF08338 Domain of unknown function (DUF1731) CAI17_16420 PF01370 NAD dependent epimerase/dehydratase family CAI17_16425 PF00486 Transcriptional regulatory protein, C terminal CAI17_16425 PF00072 Response regulator receiver domain CAI17_16430 PF00512 His Kinase A (phospho-acceptor) domain CAI17_16430 PF08521 Two-component sensor kinase N-terminal CAI17_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_16460 PF00595 PDZ domain CAI17_16480 PF01594 AI-2E family transporter CAI17_16485 PF13419 Haloacid dehalogenase-like hydrolase CAI17_16490 PF02789 Cytosol aminopeptidase family, N-terminal domain CAI17_16490 PF00883 Cytosol aminopeptidase family, catalytic domain CAI17_16505 PF00199 Catalase CAI17_16530 PF00072 Response regulator receiver domain CAI17_16530 PF00196 Bacterial regulatory proteins, luxR family CAI17_16535 PF07730 Histidine kinase CAI17_16540 PF13533 Biotin-lipoyl like CAI17_16545 PF00005 ABC transporter CAI17_16570 PF00892 EamA-like transporter family CAI17_16575 PF00892 EamA-like transporter family CAI17_16595 PF00753 Metallo-beta-lactamase superfamily CAI17_16600 PF00579 tRNA synthetases class I (W and Y) CAI17_16605 PF05532 CsbD-like CAI17_16620 PF00491 Arginase family CAI17_16650 PF02223 Thymidylate kinase CAI17_16700 PF03309 Type III pantothenate kinase CAI17_16705 PF03099 Biotin/lipoate A/B protein ligase family CAI17_16705 PF02237 Biotin protein ligase C terminal domain CAI17_16705 PF08279 HTH domain CAI17_16720 PF06167 Glucose-regulated metallo-peptidase M90 CAI17_16735 PF00672 HAMP domain CAI17_16735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_16735 PF00512 His Kinase A (phospho-acceptor) domain CAI17_16740 PF00486 Transcriptional regulatory protein, C terminal CAI17_16740 PF00072 Response regulator receiver domain CAI17_16750 PF01207 Dihydrouridine synthase (Dus) CAI17_16770 PF00199 Catalase CAI17_16770 PF06628 Catalase-related immune-responsive CAI17_16780 PF13307 Helicase C-terminal domain CAI17_16780 PF06733 DEAD_2 CAI17_16795 PF01488 Shikimate / quinate 5-dehydrogenase CAI17_16795 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CAI17_16795 PF08501 Shikimate dehydrogenase substrate binding domain CAI17_16805 PF00258 Flavodoxin CAI17_16805 PF00175 Oxidoreductase NAD-binding domain CAI17_16805 PF00667 FAD binding domain CAI17_16815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_16815 PF03466 LysR substrate binding domain CAI17_16830 PF00490 Delta-aminolevulinic acid dehydratase CAI17_16860 PF02798 Glutathione S-transferase, N-terminal domain CAI17_16860 PF00043 Glutathione S-transferase, C-terminal domain CAI17_16900 PF00005 ABC transporter CAI17_16910 PF01381 Helix-turn-helix CAI17_16920 PF01229 Glycosyl hydrolases family 39 CAI17_16925 PF02583 Metal-sensitive transcriptional repressor CAI17_16930 PF01545 Cation efflux family CAI17_16930 PF16916 Dimerisation domain of Zinc Transporter CAI17_16940 PF07715 TonB-dependent Receptor Plug Domain CAI17_16940 PF00593 TonB dependent receptor CAI17_16950 PF12833 Helix-turn-helix domain CAI17_16950 PF01965 DJ-1/PfpI family CAI17_16955 PF00970 Oxidoreductase FAD-binding domain CAI17_16955 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI17_16955 PF00175 Oxidoreductase NAD-binding domain CAI17_16960 PF00005 ABC transporter CAI17_16965 PF01061 ABC-2 type transporter CAI17_16975 PF08546 Ketopantoate reductase PanE/ApbA C terminal CAI17_16975 PF02558 Ketopantoate reductase PanE/ApbA CAI17_17010 PF00268 Ribonucleotide reductase, small chain CAI17_17020 PF00317 Ribonucleotide reductase, all-alpha domain CAI17_17020 PF02867 Ribonucleotide reductase, barrel domain CAI17_17020 PF03477 ATP cone domain CAI17_17035 PF00583 Acetyltransferase (GNAT) family CAI17_17035 PF13380 CoA binding domain CAI17_17035 PF13607 Succinyl-CoA ligase like flavodoxin domain CAI17_17040 PF00571 CBS domain CAI17_17040 PF01769 Divalent cation transporter CAI17_17040 PF03448 MgtE intracellular N domain CAI17_17045 PF00194 Eukaryotic-type carbonic anhydrase CAI17_17050 PF02254 TrkA-N domain CAI17_17050 PF00999 Sodium/hydrogen exchanger family CAI17_17060 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CAI17_17060 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CAI17_17065 PF00723 Glycosyl hydrolases family 15 CAI17_17080 PF05166 YcgL domain CAI17_17085 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI17_17085 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI17_17095 PF00535 Glycosyl transferase family 2 CAI17_17145 PF07977 FabA-like domain CAI17_17150 PF01553 Acyltransferase CAI17_17160 PF00550 Phosphopantetheine attachment site CAI17_17165 PF04820 Tryptophan halogenase CAI17_17190 PF00326 Prolyl oligopeptidase family CAI17_17190 PF07676 WD40-like Beta Propeller Repeat CAI17_17210 PF01218 Coproporphyrinogen III oxidase CAI17_17220 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CAI17_17220 PF00476 DNA polymerase family A CAI17_17220 PF01612 3'-5' exonuclease CAI17_17220 PF01367 5'-3' exonuclease, C-terminal SAM fold CAI17_17250 PF00069 Protein kinase domain CAI17_17290 PF04717 Type VI secretion system, phage-baseplate injector CAI17_17305 PF00069 Protein kinase domain CAI17_17305 PF03793 PASTA domain CAI17_17315 PF08281 Sigma-70, region 4 CAI17_17315 PF04542 Sigma-70 region 2 CAI17_17335 PF00328 Histidine phosphatase superfamily (branch 2) CAI17_17405 PF05638 Type VI secretion system effector, Hcp CAI17_17440 PF14602 Hexapeptide repeat of succinyl-transferase CAI17_17440 PF12464 Maltose acetyltransferase CAI17_17450 PF13361 UvrD-like helicase C-terminal domain CAI17_17450 PF00580 UvrD/REP helicase N-terminal domain CAI17_17465 PF13091 PLD-like domain CAI17_17465 PF13396 Phospholipase_D-nuclease N-terminal CAI17_17470 PF03466 LysR substrate binding domain CAI17_17470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_17475 PF03737 Aldolase/RraA CAI17_17480 PF04303 PrpF protein CAI17_17490 PF04909 Amidohydrolase CAI17_17495 PF00471 Ribosomal protein L33 CAI17_17500 PF00830 Ribosomal L28 family CAI17_17505 PF00873 AcrB/AcrD/AcrF family CAI17_17520 PF13533 Biotin-lipoyl like CAI17_17540 PF02527 rRNA small subunit methyltransferase G CAI17_17545 PF09423 PhoD-like phosphatase CAI17_17545 PF16655 PhoD-like phosphatase, N-terminal domain CAI17_17550 PF09423 PhoD-like phosphatase CAI17_17550 PF16655 PhoD-like phosphatase, N-terminal domain CAI17_17555 PF01648 4'-phosphopantetheinyl transferase superfamily CAI17_17560 PF04226 Transglycosylase associated protein CAI17_17570 PF03372 Endonuclease/Exonuclease/phosphatase family CAI17_17575 PF00480 ROK family CAI17_17585 PF09312 SurA N-terminal domain CAI17_17585 PF00639 PPIC-type PPIASE domain CAI17_17595 PF00474 Sodium:solute symporter family CAI17_17600 PF04341 Protein of unknown function, DUF485 CAI17_17610 PF16177 Acetyl-coenzyme A synthetase N-terminus CAI17_17610 PF13193 AMP-binding enzyme C-terminal domain CAI17_17610 PF00501 AMP-binding enzyme CAI17_17620 PF00072 Response regulator receiver domain CAI17_17620 PF00196 Bacterial regulatory proteins, luxR family CAI17_17650 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI17_17650 PF04616 Glycosyl hydrolases family 43 CAI17_17660 PF00248 Aldo/keto reductase family CAI17_17675 PF01557 Fumarylacetoacetate (FAA) hydrolase family CAI17_17685 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI17_17685 PF13378 Enolase C-terminal domain-like CAI17_17690 PF05336 L-rhamnose mutarotase CAI17_17695 PF07690 Major Facilitator Superfamily CAI17_17700 PF01614 Bacterial transcriptional regulator CAI17_17700 PF09339 IclR helix-turn-helix domain CAI17_17710 PF02659 Putative manganese efflux pump CAI17_17715 PF00512 His Kinase A (phospho-acceptor) domain CAI17_17715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_17730 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CAI17_17730 PF06165 Glycosyltransferase family 36 CAI17_17750 PF13360 PQQ-like domain CAI17_17750 PF13570 PQQ-like domain CAI17_17750 PF01011 PQQ enzyme repeat CAI17_17770 PF04357 TamB, inner membrane protein subunit of TAM complex CAI17_17775 PF01103 Surface antigen CAI17_17775 PF17243 POTRA domain TamA domain 1 CAI17_17820 PF05746 DALR anticodon binding domain CAI17_17820 PF02092 Glycyl-tRNA synthetase beta subunit CAI17_17825 PF02091 Glycyl-tRNA synthetase alpha subunit CAI17_17845 PF00958 GMP synthase C terminal domain CAI17_17845 PF00117 Glutamine amidotransferase class-I CAI17_17855 PF00902 Sec-independent protein translocase protein (TatC) CAI17_17860 PF02416 mttA/Hcf106 family CAI17_17865 PF02416 mttA/Hcf106 family CAI17_17875 PF00762 Ferrochelatase CAI17_17880 PF12697 Alpha/beta hydrolase family CAI17_17900 PF04381 Putative exonuclease, RdgC CAI17_17905 PF01171 PP-loop family CAI17_17920 PF00356 Bacterial regulatory proteins, lacI family CAI17_17935 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI17_17935 PF13378 Enolase C-terminal domain-like CAI17_17940 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI17_17940 PF04616 Glycosyl hydrolases family 43 CAI17_17945 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI17_17945 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI17_17945 PF07691 PA14 domain CAI17_17945 PF14310 Fibronectin type III-like domain CAI17_17950 PF08125 Mannitol dehydrogenase C-terminal domain CAI17_17950 PF01232 Mannitol dehydrogenase Rossmann domain CAI17_17995 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CAI17_18020 PF03377 TAL effector repeat CAI17_18050 PF00239 Resolvase, N terminal domain CAI17_18050 PF02796 Helix-turn-helix domain of resolvase CAI17_18120 PF02796 Helix-turn-helix domain of resolvase CAI17_18120 PF00239 Resolvase, N terminal domain CAI17_18140 PF07883 Cupin domain CAI17_18155 PF00155 Aminotransferase class I and II CAI17_18160 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CAI17_18190 PF07726 ATPase family associated with various cellular activities (AAA) CAI17_18190 PF17863 AAA lid domain CAI17_18230 PF08946 Osmosensory transporter coiled coil CAI17_18230 PF00083 Sugar (and other) transporter CAI17_18240 PF00085 Thioredoxin CAI17_18255 PF00293 NUDIX domain CAI17_18255 PF13344 Haloacid dehalogenase-like hydrolase CAI17_18265 PF16485 Protealysin propeptide CAI17_18265 PF02868 Thermolysin metallopeptidase, alpha-helical domain CAI17_18265 PF01447 Thermolysin metallopeptidase, catalytic domain CAI17_18285 PF05532 CsbD-like CAI17_18310 PF02525 Flavodoxin-like fold CAI17_18330 PF00106 short chain dehydrogenase CAI17_18350 PF03006 Haemolysin-III related CAI17_18355 PF00270 DEAD/DEAH box helicase CAI17_18355 PF09369 Domain of unknown function (DUF1998) CAI17_18355 PF00271 Helicase conserved C-terminal domain CAI17_18450 PF00685 Sulfotransferase domain CAI17_18455 PF02603 HPr Serine kinase N terminus CAI17_18455 PF07475 HPr Serine kinase C-terminal domain CAI17_18470 PF00733 Asparagine synthase CAI17_18470 PF13537 Glutamine amidotransferase domain CAI17_18485 PF00005 ABC transporter CAI17_18485 PF00664 ABC transporter transmembrane region CAI17_18500 PF16363 GDP-mannose 4,6 dehydratase CAI17_18535 PF13439 Glycosyltransferase Family 4 CAI17_18535 PF00534 Glycosyl transferases group 1 CAI17_18560 PF02350 UDP-N-acetylglucosamine 2-epimerase CAI17_18565 PF02397 Bacterial sugar transferase CAI17_18585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_18585 PF03466 LysR substrate binding domain CAI17_18615 PF00310 Glutamine amidotransferases class-II CAI17_18615 PF04898 Glutamate synthase central domain CAI17_18615 PF01645 Conserved region in glutamate synthase CAI17_18615 PF01493 GXGXG motif CAI17_18620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CAI17_18620 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_18625 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_18625 PF00107 Zinc-binding dehydrogenase CAI17_18635 PF00150 Cellulase (glycosyl hydrolase family 5) CAI17_18645 PF00150 Cellulase (glycosyl hydrolase family 5) CAI17_18655 PF00150 Cellulase (glycosyl hydrolase family 5) CAI17_18665 PF04389 Peptidase family M28 CAI17_18675 PF01551 Peptidase family M23 CAI17_18680 PF13180 PDZ domain CAI17_18680 PF03572 Peptidase family S41 CAI17_18685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CAI17_18685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CAI17_18700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CAI17_18735 PF13091 PLD-like domain CAI17_18735 PF13396 Phospholipase_D-nuclease N-terminal CAI17_18745 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CAI17_18750 PF02472 Biopolymer transport protein ExbD/TolR CAI17_18755 PF02472 Biopolymer transport protein ExbD/TolR CAI17_18760 PF01618 MotA/TolQ/ExbB proton channel family CAI17_18775 PF01435 Peptidase family M48 CAI17_18785 PF00204 DNA gyrase B CAI17_18785 PF18053 DNA gyrase B subunit insert domain CAI17_18785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_18785 PF01751 Toprim domain CAI17_18785 PF00986 DNA gyrase B subunit, carboxyl terminus CAI17_18790 PF02463 RecF/RecN/SMC N terminal domain CAI17_18795 PF00712 DNA polymerase III beta subunit, N-terminal domain CAI17_18795 PF02768 DNA polymerase III beta subunit, C-terminal domain CAI17_18795 PF02767 DNA polymerase III beta subunit, central domain CAI17_18800 PF00308 Bacterial dnaA protein CAI17_18800 PF08299 Bacterial dnaA protein helix-turn-helix CAI17_18800 PF11638 DnaA N-terminal domain CAI17_18805 PF00468 Ribosomal protein L34 CAI17_18810 PF00825 Ribonuclease P CAI17_18815 PF14849 YidC periplasmic domain CAI17_18815 PF02096 60Kd inner membrane protein CAI17_18820 PF01522 Polysaccharide deacetylase CAI17_18825 PF01926 50S ribosome-binding GTPase CAI17_18825 PF12631 MnmE helical domain CAI17_18825 PF10396 GTP-binding protein TrmE N-terminus CAI17_18830 PF01569 PAP2 superfamily CAI17_18840 PF03009 Glycerophosphoryl diester phosphodiesterase family CAI17_18845 PF01694 Rhomboid family CAI17_18855 PF03741 Integral membrane protein TerC family CAI17_18865 PF17785 PUA-like domain CAI17_18865 PF10672 S-adenosylmethionine-dependent methyltransferase CAI17_18890 PF05598 Transposase domain (DUF772) CAI17_18895 PF10947 Protein of unknown function (DUF2628) CAI17_18910 PF13520 Amino acid permease CAI17_18920 PF00043 Glutathione S-transferase, C-terminal domain CAI17_18920 PF13417 Glutathione S-transferase, N-terminal domain CAI17_18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_18935 PF03466 LysR substrate binding domain CAI17_18940 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_18940 PF00107 Zinc-binding dehydrogenase CAI17_18945 PF02646 RmuC family CAI17_18955 PF00255 Glutathione peroxidase CAI17_18965 PF04333 MlaA lipoprotein CAI17_18975 PF05494 MlaC protein CAI17_18980 PF02470 MlaD protein CAI17_18985 PF02405 Permease MlaE CAI17_18990 PF00005 ABC transporter CAI17_19005 PF17946 RecC C-terminal domain CAI17_19010 PF13361 UvrD-like helicase C-terminal domain CAI17_19010 PF00580 UvrD/REP helicase N-terminal domain CAI17_19010 PF12705 PD-(D/E)XK nuclease superfamily CAI17_19015 PF13538 UvrD-like helicase C-terminal domain CAI17_19030 PF05598 Transposase domain (DUF772) CAI17_19030 PF01609 Transposase DDE domain CAI17_19065 PF01425 Amidase CAI17_19070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI17_19070 PF00364 Biotin-requiring enzyme CAI17_19070 PF00289 Biotin carboxylase, N-terminal domain CAI17_19070 PF02785 Biotin carboxylase C-terminal domain CAI17_19105 PF00849 RNA pseudouridylate synthase CAI17_19175 PF01850 PIN domain CAI17_19200 PF13396 Phospholipase_D-nuclease N-terminal CAI17_19200 PF13091 PLD-like domain CAI17_19205 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family CAI17_19210 PF00083 Sugar (and other) transporter CAI17_19215 PF04632 Fusaric acid resistance protein family CAI17_19220 PF02321 Outer membrane efflux protein CAI17_19225 PF00529 HlyD membrane-fusion protein of T1SS CAI17_19225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_19230 PF07869 Protein of unknown function (DUF1656) CAI17_19240 PF01227 GTP cyclohydrolase I CAI17_19260 PF01925 Sulfite exporter TauE/SafE CAI17_19265 PF02810 SEC-C motif CAI17_19275 PF01263 Aldose 1-epimerase CAI17_19290 PF01126 Heme oxygenase CAI17_19295 PF08446 PAS fold CAI17_19295 PF01590 GAF domain CAI17_19295 PF00360 Phytochrome region CAI17_19295 PF13426 PAS domain CAI17_19300 PF03594 Benzoate membrane transport protein CAI17_19330 PF00171 Aldehyde dehydrogenase family CAI17_19330 PF14850 DNA-binding domain of Proline dehydrogenase CAI17_19330 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI17_19330 PF01619 Proline dehydrogenase CAI17_19340 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CAI17_19340 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CAI17_19345 PF00115 Cytochrome C and Quinol oxidase polypeptide I CAI17_19355 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CAI17_19360 PF00510 Cytochrome c oxidase subunit III CAI17_19385 PF01040 UbiA prenyltransferase family CAI17_19395 PF13593 SBF-like CPA transporter family (DUF4137) CAI17_19400 PF10410 DnaB-helicase binding domain of primase CAI17_19400 PF01807 CHC2 zinc finger CAI17_19400 PF08275 DNA primase catalytic core, N-terminal domain CAI17_19400 PF08278 DNA primase DnaG DnaB-binding CAI17_19405 PF03631 Virulence factor BrkB CAI17_19415 PF09424 Yqey-like protein CAI17_19420 PF01165 Ribosomal protein S21 CAI17_19425 PF00814 Glycoprotease family CAI17_19430 PF02152 Dihydroneopterin aldolase CAI17_19435 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI17_19435 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI17_19435 PF14310 Fibronectin type III-like domain CAI17_19440 PF07995 Glucose / Sorbosone dehydrogenase CAI17_19445 PF05360 yiaA/B two helix domain CAI17_19460 PF13520 Amino acid permease CAI17_19470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI17_19470 PF13378 Enolase C-terminal domain-like CAI17_19480 PF01510 N-acetylmuramoyl-L-alanine amidase CAI17_19485 PF01427 D-ala-D-ala dipeptidase CAI17_19535 PF07063 Domain of unknown function (DUF1338) CAI17_19540 PF00873 AcrB/AcrD/AcrF family CAI17_19545 PF00873 AcrB/AcrD/AcrF family CAI17_19550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_19555 PF01546 Peptidase family M20/M25/M40 CAI17_19555 PF07687 Peptidase dimerisation domain CAI17_19560 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CAI17_19560 PF14489 QueF-like protein CAI17_19565 PF01476 LysM domain CAI17_19565 PF04972 BON domain CAI17_19575 PF09827 CRISPR associated protein Cas2 CAI17_19580 PF01867 CRISPR associated protein Cas1 CAI17_19600 PF09704 CRISPR-associated protein (Cas_Cas5) CAI17_19615 PF03971 Monomeric isocitrate dehydrogenase CAI17_19625 PF03466 LysR substrate binding domain CAI17_19625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_19630 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CAI17_19635 PF07498 Rho termination factor, N-terminal domain CAI17_19635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI17_19635 PF07497 Rho termination factor, RNA-binding domain CAI17_19640 PF00085 Thioredoxin CAI17_19645 PF00270 DEAD/DEAH box helicase CAI17_19645 PF00271 Helicase conserved C-terminal domain CAI17_19645 PF12300 ATP-dependent RNA helicase RhlB CAI17_19650 PF00005 ABC transporter CAI17_19655 PF18075 FtsX extracellular domain CAI17_19660 PF00072 Response regulator receiver domain CAI17_19665 PF03167 Uracil DNA glycosylase superfamily CAI17_19670 PF04545 Sigma-70, region 4 CAI17_19670 PF04542 Sigma-70 region 2 CAI17_19680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_19695 PF00043 Glutathione S-transferase, C-terminal domain CAI17_19695 PF13417 Glutathione S-transferase, N-terminal domain CAI17_19700 PF18074 Primosomal protein N C-terminal domain CAI17_19700 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CAI17_19700 PF00271 Helicase conserved C-terminal domain CAI17_19700 PF00270 DEAD/DEAH box helicase CAI17_19700 PF17764 3′ DNA-binding domain (3′BD) CAI17_19720 PF01554 MatE CAI17_19725 PF01343 Peptidase family S49 CAI17_19750 PF01300 Telomere recombination CAI17_19755 PF01131 DNA topoisomerase CAI17_19755 PF01751 Toprim domain CAI17_19755 PF13368 Topoisomerase C-terminal repeat CAI17_19765 PF07963 Prokaryotic N-terminal methylation motif CAI17_19765 PF00114 Pilin (bacterial filament) CAI17_19770 PF04361 Protein of unknown function (DUF494) CAI17_19775 PF17782 DprA winged helix domain CAI17_19775 PF02481 DNA recombination-mediator protein A CAI17_19780 PF01476 LysM domain CAI17_19785 PF01327 Polypeptide deformylase CAI17_19790 PF00551 Formyl transferase CAI17_19790 PF02911 Formyl transferase, C-terminal domain CAI17_19795 PF01029 NusB family CAI17_19795 PF01189 16S rRNA methyltransferase RsmB/F CAI17_19810 PF00535 Glycosyl transferase family 2 CAI17_19830 PF00925 GTP cyclohydrolase II CAI17_19850 PF03279 Bacterial lipid A biosynthesis acyltransferase CAI17_19855 PF02580 D-Tyr-tRNA(Tyr) deacylase CAI17_19860 PF04546 Sigma-70, non-essential region CAI17_19860 PF03979 Sigma-70 factor, region 1.1 CAI17_19860 PF04545 Sigma-70, region 4 CAI17_19860 PF00140 Sigma-70 factor, region 1.2 CAI17_19860 PF04539 Sigma-70 region 3 CAI17_19860 PF04542 Sigma-70 region 2 CAI17_19935 PF02525 Flavodoxin-like fold CAI17_19940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_19940 PF03466 LysR substrate binding domain CAI17_19955 PF00672 HAMP domain CAI17_19955 PF02203 Tar ligand binding domain homologue CAI17_19955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_19970 PF01042 Endoribonuclease L-PSP CAI17_19975 PF03466 LysR substrate binding domain CAI17_19975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_19985 PF00005 ABC transporter CAI17_20000 PF00593 TonB dependent receptor CAI17_20000 PF07715 TonB-dependent Receptor Plug Domain CAI17_20045 PF00107 Zinc-binding dehydrogenase CAI17_20045 PF08240 Alcohol dehydrogenase GroES-like domain CAI17_20045 PF13823 Alcohol dehydrogenase GroES-associated CAI17_20070 PF00005 ABC transporter CAI17_20070 PF00664 ABC transporter transmembrane region CAI17_20090 PF03275 UDP-galactopyranose mutase CAI17_20100 PF16363 GDP-mannose 4,6 dehydratase CAI17_20125 PF02322 Cytochrome bd terminal oxidase subunit II CAI17_20130 PF01654 Cytochrome bd terminal oxidase subunit I CAI17_20145 PF02954 Bacterial regulatory protein, Fis family CAI17_20145 PF00072 Response regulator receiver domain CAI17_20145 PF00158 Sigma-54 interaction domain CAI17_20160 PF01339 CheB methylesterase CAI17_20160 PF03705 CheR methyltransferase, all-alpha domain CAI17_20160 PF08448 PAS fold CAI17_20160 PF01739 CheR methyltransferase, SAM binding domain CAI17_20180 PF05067 Manganese containing catalase CAI17_20185 PF05974 Domain of unknown function (DUF892) CAI17_20210 PF00672 HAMP domain CAI17_20210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_20210 PF06580 Histidine kinase CAI17_20210 PF02743 Cache domain CAI17_20215 PF04397 LytTr DNA-binding domain CAI17_20215 PF00072 Response regulator receiver domain CAI17_20225 PF13520 Amino acid permease CAI17_20245 PF05649 Peptidase family M13 CAI17_20245 PF01431 Peptidase family M13 CAI17_20250 PF00535 Glycosyl transferase family 2 CAI17_20260 PF00248 Aldo/keto reductase family CAI17_20265 PF03358 NADPH-dependent FMN reductase CAI17_20280 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CAI17_20290 PF03167 Uracil DNA glycosylase superfamily CAI17_20295 PF02469 Fasciclin domain CAI17_20305 PF00999 Sodium/hydrogen exchanger family CAI17_20310 PF00005 ABC transporter CAI17_20315 PF01061 ABC-2 type transporter CAI17_20345 PF13677 Membrane MotB of proton-channel complex MotA/MotB CAI17_20345 PF00691 OmpA family CAI17_20350 PF01618 MotA/TolQ/ExbB proton channel family CAI17_20360 PF01641 SelR domain CAI17_20370 PF01037 Lrp/AsnC ligand binding domain CAI17_20375 PF01266 FAD dependent oxidoreductase CAI17_20380 PF01168 Alanine racemase, N-terminal domain CAI17_20380 PF00842 Alanine racemase, C-terminal domain CAI17_20400 PF00512 His Kinase A (phospho-acceptor) domain CAI17_20400 PF00989 PAS fold CAI17_20400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_20420 PF05175 Methyltransferase small domain CAI17_20420 PF08468 Methyltransferase small domain N-terminal CAI17_20425 PF01479 S4 domain CAI17_20425 PF00849 RNA pseudouridylate synthase CAI17_20430 PF13419 Haloacid dehalogenase-like hydrolase CAI17_20455 PF18415 Histidine kinase receptor ArcB trans-membrane domain CAI17_20455 PF00512 His Kinase A (phospho-acceptor) domain CAI17_20455 PF00072 Response regulator receiver domain CAI17_20455 PF01627 Hpt domain CAI17_20455 PF00989 PAS fold CAI17_20455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_20465 PF04461 Protein of unknown function (DUF520) CAI17_20470 PF00892 EamA-like transporter family CAI17_20475 PF09383 NIL domain CAI17_20475 PF00005 ABC transporter CAI17_20480 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_20485 PF03180 NLPA lipoprotein CAI17_20525 PF00364 Biotin-requiring enzyme CAI17_20525 PF02817 e3 binding domain CAI17_20525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI17_20535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI17_20535 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI17_20555 PF00119 ATP synthase A chain CAI17_20560 PF00137 ATP synthase subunit C CAI17_20565 PF00430 ATP synthase B/B' CF(0) CAI17_20570 PF00213 ATP synthase delta (OSCP) subunit CAI17_20575 PF00306 ATP synthase alpha/beta chain, C terminal domain CAI17_20575 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI17_20575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI17_20580 PF00231 ATP synthase CAI17_20585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI17_20585 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI17_20590 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CAI17_20590 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CAI17_20605 PF00132 Bacterial transferase hexapeptide (six repeats) CAI17_20605 PF12804 MobA-like NTP transferase domain CAI17_20605 PF14602 Hexapeptide repeat of succinyl-transferase CAI17_20610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_20610 PF00512 His Kinase A (phospho-acceptor) domain CAI17_20615 PF00158 Sigma-54 interaction domain CAI17_20615 PF00072 Response regulator receiver domain CAI17_20615 PF02954 Bacterial regulatory protein, Fis family CAI17_20625 PF12704 MacB-like periplasmic core domain CAI17_20625 PF02687 FtsX-like permease family CAI17_20630 PF02687 FtsX-like permease family CAI17_20630 PF12704 MacB-like periplasmic core domain CAI17_20635 PF00005 ABC transporter CAI17_20635 PF12704 MacB-like periplasmic core domain CAI17_20635 PF02687 FtsX-like permease family CAI17_20640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI17_20645 PF01380 SIS domain CAI17_20675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CAI17_20680 PF05275 Copper resistance protein B precursor (CopB) CAI17_20685 PF00394 Multicopper oxidase CAI17_20685 PF07731 Multicopper oxidase CAI17_20685 PF07732 Multicopper oxidase CAI17_20700 PF01432 Peptidase family M3 CAI17_20710 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI17_20710 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI17_20715 PF07977 FabA-like domain CAI17_20720 PF11799 impB/mucB/samB family C-terminal domain CAI17_20720 PF00817 impB/mucB/samB family CAI17_20725 PF13419 Haloacid dehalogenase-like hydrolase CAI17_20730 PF07715 TonB-dependent Receptor Plug Domain CAI17_20730 PF00593 TonB dependent receptor CAI17_20735 PF00756 Putative esterase CAI17_20745 PF13185 GAF domain CAI17_20765 PF01242 6-pyruvoyl tetrahydropterin synthase CAI17_20775 PF07715 TonB-dependent Receptor Plug Domain CAI17_20775 PF00593 TonB dependent receptor CAI17_20785 PF00270 DEAD/DEAH box helicase CAI17_20785 PF00271 Helicase conserved C-terminal domain CAI17_20800 PF14497 Glutathione S-transferase, C-terminal domain CAI17_20800 PF02798 Glutathione S-transferase, N-terminal domain CAI17_20805 PF00437 Type II/IV secretion system protein CAI17_20825 PF00291 Pyridoxal-phosphate dependent enzyme CAI17_20825 PF00571 CBS domain CAI17_20830 PF01053 Cys/Met metabolism PLP-dependent enzyme CAI17_20840 PF00005 ABC transporter CAI17_20840 PF14524 Wzt C-terminal domain CAI17_20850 PF00535 Glycosyl transferase family 2 CAI17_20885 PF01370 NAD dependent epimerase/dehydratase family CAI17_20895 PF00106 short chain dehydrogenase CAI17_20900 PF01565 FAD binding domain CAI17_20900 PF04030 D-arabinono-1,4-lactone oxidase CAI17_20905 PF01040 UbiA prenyltransferase family CAI17_20915 PF00766 Electron transfer flavoprotein FAD-binding domain CAI17_20915 PF01012 Electron transfer flavoprotein domain CAI17_20920 PF01012 Electron transfer flavoprotein domain CAI17_20925 PF16363 GDP-mannose 4,6 dehydratase CAI17_20930 PF00483 Nucleotidyl transferase CAI17_20935 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CAI17_20940 PF04321 RmlD substrate binding domain CAI17_20945 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI17_20945 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI17_20945 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI17_20950 PF00483 Nucleotidyl transferase CAI17_20950 PF01050 Mannose-6-phosphate isomerase CAI17_20955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI17_20955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI17_20955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI17_20955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI17_20960 PF01144 Coenzyme A transferase CAI17_20965 PF01144 Coenzyme A transferase CAI17_20970 PF14307 Glycosyltransferase WbsX CAI17_20970 PF05045 Rhamnan synthesis protein F CAI17_20990 PF03886 ABC-type transport auxiliary lipoprotein component CAI17_20990 PF02470 MlaD protein CAI17_20995 PF00005 ABC transporter CAI17_21000 PF02405 Permease MlaE CAI17_21010 PF00816 H-NS histone family CAI17_21015 PF03129 Anticodon binding domain CAI17_21015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI17_21015 PF04073 Aminoacyl-tRNA editing domain CAI17_21025 PF01066 CDP-alcohol phosphatidyltransferase CAI17_21040 PF00544 Pectate lyase CAI17_21045 PF01464 Transglycosylase SLT domain CAI17_21050 PF00593 TonB dependent receptor CAI17_21050 PF07715 TonB-dependent Receptor Plug Domain CAI17_21065 PF00133 tRNA synthetases class I (I, L, M and V) CAI17_21065 PF10458 Valyl tRNA synthetase tRNA binding arm CAI17_21065 PF08264 Anticodon-binding domain of tRNA CAI17_21080 PF00883 Cytosol aminopeptidase family, catalytic domain CAI17_21080 PF02789 Cytosol aminopeptidase family, N-terminal domain CAI17_21090 PF03739 Lipopolysaccharide export system permease LptF/LptG CAI17_21105 PF00589 Phage integrase family CAI17_21105 PF02899 Phage integrase, N-terminal SAM-like domain CAI17_21115 PF10411 Disulfide bond isomerase protein N-terminus CAI17_21115 PF13098 Thioredoxin-like domain CAI17_21125 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CAI17_21125 PF02769 AIR synthase related protein, C-terminal domain CAI17_21125 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CAI17_21130 PF03895 YadA-like membrane anchor domain CAI17_21130 PF05658 Head domain of trimeric autotransporter adhesin CAI17_21130 PF13018 Extended Signal Peptide of Type V secretion system CAI17_21130 PF05662 Coiled stalk of trimeric autotransporter adhesin CAI17_21135 PF00082 Subtilase family CAI17_21135 PF04151 Bacterial pre-peptidase C-terminal domain CAI17_21140 PF13018 Extended Signal Peptide of Type V secretion system CAI17_21140 PF03895 YadA-like membrane anchor domain CAI17_21140 PF05658 Head domain of trimeric autotransporter adhesin CAI17_21140 PF05662 Coiled stalk of trimeric autotransporter adhesin CAI17_21145 PF04151 Bacterial pre-peptidase C-terminal domain CAI17_21145 PF00082 Subtilase family CAI17_21150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CAI17_21150 PF00437 Type II/IV secretion system protein CAI17_21160 PF00482 Type II secretion system (T2SS), protein F CAI17_21165 PF08334 Type II secretion system (T2SS), protein G CAI17_21170 PF12019 Type II transport protein GspH CAI17_21175 PF07963 Prokaryotic N-terminal methylation motif CAI17_21185 PF03934 Type II secretion system (T2SS), protein K CAI17_21190 PF05137 Fimbrial assembly protein (PilN) CAI17_21195 PF10741 Type II secretion system (T2SS), protein M subtype b CAI17_21205 PF00263 Bacterial type II and III secretion system protein CAI17_21205 PF03958 Bacterial type II/III secretion system short domain CAI17_21220 PF07702 UTRA domain CAI17_21220 PF00392 Bacterial regulatory proteins, gntR family CAI17_21230 PF00593 TonB dependent receptor CAI17_21230 PF07715 TonB-dependent Receptor Plug Domain CAI17_21285 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CAI17_21285 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CAI17_21300 PF03552 Cellulose synthase CAI17_21300 PF00535 Glycosyl transferase family 2 CAI17_21300 PF07238 PilZ domain CAI17_21305 PF03170 Bacterial cellulose synthase subunit CAI17_21310 PF01270 Glycosyl hydrolases family 8 CAI17_21315 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CAI17_21345 PF01327 Polypeptide deformylase CAI17_21350 PF02645 Uncharacterised protein, DegV family COG1307 CAI17_21385 PF01979 Amidohydrolase family CAI17_21390 PF01979 Amidohydrolase family CAI17_21405 PF00462 Glutaredoxin CAI17_21410 PF01522 Polysaccharide deacetylase CAI17_21440 PF00155 Aminotransferase class I and II CAI17_21445 PF00664 ABC transporter transmembrane region CAI17_21445 PF03412 Peptidase C39 family CAI17_21445 PF00005 ABC transporter CAI17_21460 PF01121 Dephospho-CoA kinase CAI17_21465 PF01478 Type IV leader peptidase family CAI17_21465 PF06750 Bacterial Peptidase A24 N-terminal domain CAI17_21470 PF00482 Type II secretion system (T2SS), protein F CAI17_21475 PF00114 Pilin (bacterial filament) CAI17_21475 PF07963 Prokaryotic N-terminal methylation motif CAI17_21480 PF07963 Prokaryotic N-terminal methylation motif CAI17_21480 PF00114 Pilin (bacterial filament) CAI17_21485 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CAI17_21485 PF00437 Type II/IV secretion system protein CAI17_21495 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CAI17_21495 PF00437 Type II/IV secretion system protein CAI17_21505 PF00072 Response regulator receiver domain CAI17_21505 PF00158 Sigma-54 interaction domain CAI17_21505 PF02954 Bacterial regulatory protein, Fis family CAI17_21510 PF00512 His Kinase A (phospho-acceptor) domain CAI17_21510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_21515 PF00549 CoA-ligase CAI17_21515 PF08442 ATP-grasp domain CAI17_21520 PF02629 CoA binding domain CAI17_21520 PF00549 CoA-ligase CAI17_21530 PF00795 Carbon-nitrogen hydrolase CAI17_21530 PF02540 NAD synthase CAI17_21540 PF13525 Outer membrane lipoprotein CAI17_21545 PF00849 RNA pseudouridylate synthase CAI17_21560 PF04134 Protein of unknown function, DUF393 CAI17_21565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_21565 PF00672 HAMP domain CAI17_21565 PF02203 Tar ligand binding domain homologue CAI17_21575 PF01011 PQQ enzyme repeat CAI17_21580 PF00982 Glycosyltransferase family 20 CAI17_21585 PF00723 Glycosyl hydrolases family 15 CAI17_21590 PF02358 Trehalose-phosphatase CAI17_21600 PF00593 TonB dependent receptor CAI17_21600 PF07715 TonB-dependent Receptor Plug Domain CAI17_21635 PF01541 GIY-YIG catalytic domain CAI17_21645 PF00593 TonB dependent receptor CAI17_21645 PF07715 TonB-dependent Receptor Plug Domain CAI17_21650 PF00296 Luciferase-like monooxygenase CAI17_21655 PF00248 Aldo/keto reductase family CAI17_21660 PF09084 NMT1/THI5 like CAI17_21665 PF00528 Binding-protein-dependent transport system inner membrane component CAI17_21670 PF00005 ABC transporter CAI17_21675 PF02861 Clp amino terminal domain, pathogenicity island component CAI17_21675 PF10431 C-terminal, D2-small domain, of ClpB protein CAI17_21675 PF00004 ATPase family associated with various cellular activities (AAA) CAI17_21675 PF17871 AAA lid domain CAI17_21675 PF07724 AAA domain (Cdc48 subfamily) CAI17_21680 PF07715 TonB-dependent Receptor Plug Domain CAI17_21680 PF00593 TonB dependent receptor CAI17_21695 PF12557 Cob(I)alamin adenosyltransferase N terminal CAI17_21695 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CAI17_21705 PF00155 Aminotransferase class I and II CAI17_21710 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CAI17_21710 PF07685 CobB/CobQ-like glutamine amidotransferase domain CAI17_21715 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CAI17_21720 PF02277 Phosphoribosyltransferase CAI17_21750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CAI17_21750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CAI17_21760 PF07690 Major Facilitator Superfamily CAI17_21765 PF06276 Ferric iron reductase FhuF-like transporter CAI17_21765 PF04183 IucA / IucC family CAI17_21775 PF07660 Secretin and TonB N terminus short domain CAI17_21775 PF00593 TonB dependent receptor CAI17_21775 PF07715 TonB-dependent Receptor Plug Domain CAI17_21800 PF02254 TrkA-N domain CAI17_21800 PF00999 Sodium/hydrogen exchanger family CAI17_21810 PF00067 Cytochrome P450 CAI17_21815 PF00593 TonB dependent receptor CAI17_21815 PF07715 TonB-dependent Receptor Plug Domain CAI17_21835 PF00593 TonB dependent receptor CAI17_21835 PF07715 TonB-dependent Receptor Plug Domain CAI17_21840 PF12848 ABC transporter CAI17_21840 PF00005 ABC transporter CAI17_21850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI17_21850 PF03466 LysR substrate binding domain CAI17_21870 PF05506 Domain of unknown function (DUF756) CAI17_21870 PF04185 Phosphoesterase family CAI17_21885 PF07690 Major Facilitator Superfamily CAI17_21900 PF02938 GAD domain CAI17_21900 PF01336 OB-fold nucleic acid binding domain CAI17_21900 PF00152 tRNA synthetases class II (D, K and N) CAI17_21915 PF01709 Transcriptional regulator CAI17_21920 PF02075 Crossover junction endodeoxyribonuclease RuvC CAI17_21925 PF01330 RuvA N terminal domain CAI17_21925 PF07499 RuvA, C-terminal domain CAI17_21930 PF02705 K+ potassium transporter CAI17_21940 PF05491 RuvB C-terminal winged helix domain CAI17_21940 PF05496 Holliday junction DNA helicase RuvB P-loop domain CAI17_21940 PF17864 RuvB AAA lid domain CAI17_21945 PF03061 Thioesterase superfamily CAI17_21950 PF01618 MotA/TolQ/ExbB proton channel family CAI17_21955 PF02472 Biopolymer transport protein ExbD/TolR CAI17_21965 PF04052 TolB amino-terminal domain CAI17_21965 PF07676 WD40-like Beta Propeller Repeat CAI17_21970 PF00691 OmpA family CAI17_21980 PF04055 Radical SAM superfamily CAI17_21990 PF06508 Queuosine biosynthesis protein QueC CAI17_21995 PF13581 Histidine kinase-like ATPase domain CAI17_21995 PF07536 HWE histidine kinase CAI17_21995 PF13426 PAS domain CAI17_22015 PF02203 Tar ligand binding domain homologue CAI17_22015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_22015 PF00672 HAMP domain CAI17_22050 PF09382 RQC domain CAI17_22050 PF00271 Helicase conserved C-terminal domain CAI17_22050 PF00570 HRDC domain CAI17_22050 PF16124 RecQ zinc-binding CAI17_22050 PF00270 DEAD/DEAH box helicase CAI17_22060 PF00210 Ferritin-like domain CAI17_22065 PF11898 Domain of unknown function (DUF3418) CAI17_22065 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CAI17_22065 PF00271 Helicase conserved C-terminal domain CAI17_22065 PF00270 DEAD/DEAH box helicase CAI17_22065 PF04408 Helicase associated domain (HA2) CAI17_22090 PF04055 Radical SAM superfamily CAI17_22090 PF13186 Iron-sulfur cluster-binding domain CAI17_22095 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CAI17_22100 PF03070 TENA/THI-4/PQQC family CAI17_22105 PF12706 Beta-lactamase superfamily domain CAI17_22110 PF08042 PqqA family CAI17_22115 PF02824 TGS domain CAI17_22115 PF04607 Region found in RelA / SpoT proteins CAI17_22115 PF13291 ACT domain CAI17_22135 PF00535 Glycosyl transferase family 2 CAI17_22140 PF00912 Transglycosylase CAI17_22140 PF00905 Penicillin binding protein transpeptidase domain CAI17_22140 PF14814 Bifunctional transglycosylase second domain CAI17_22150 PF13307 Helicase C-terminal domain CAI17_22150 PF04851 Type III restriction enzyme, res subunit CAI17_22155 PF00814 Glycoprotease family CAI17_22160 PF03747 ADP-ribosylglycohydrolase CAI17_22170 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CAI17_22170 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CAI17_22175 PF00072 Response regulator receiver domain CAI17_22180 PF00072 Response regulator receiver domain CAI17_22185 PF01584 CheW-like domain CAI17_22190 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CAI17_22190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI17_22195 PF01584 CheW-like domain CAI17_22195 PF01627 Hpt domain CAI17_22195 PF02895 Signal transducing histidine kinase, homodimeric domain CAI17_22195 PF00072 Response regulator receiver domain CAI17_22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_22210 PF13302 Acetyltransferase (GNAT) domain CAI17_22225 PF01112 Asparaginase CAI17_22230 PF03932 CutC family CAI17_22265 PF01301 Glycosyl hydrolases family 35 CAI17_22270 PF17678 Glycosyl hydrolase family 92 N-terminal domain CAI17_22270 PF07971 Glycosyl hydrolase family 92 CAI17_22300 PF00664 ABC transporter transmembrane region CAI17_22300 PF00005 ABC transporter CAI17_22300 PF03412 Peptidase C39 family CAI17_22305 PF14310 Fibronectin type III-like domain CAI17_22305 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI17_22305 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI17_22305 PF07691 PA14 domain CAI17_22320 PF01476 LysM domain CAI17_22320 PF00704 Glycosyl hydrolases family 18 CAI17_22335 PF02685 Glucokinase CAI17_22340 PF04452 RNA methyltransferase CAI17_22345 PF00202 Aminotransferase class-III CAI17_22350 PF00293 NUDIX domain CAI17_22355 PF00459 Inositol monophosphatase family CAI17_22360 PF03819 MazG nucleotide pyrophosphohydrolase domain CAI17_22365 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CAI17_22390 PF08669 Glycine cleavage T-protein C-terminal barrel domain CAI17_22390 PF01571 Aminomethyltransferase folate-binding domain CAI17_22395 PF01597 Glycine cleavage H-protein CAI17_22420 PF09317 Domain of unknown function (DUF1974) CAI17_22420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI17_22420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI17_22425 PF00561 alpha/beta hydrolase fold CAI17_22430 PF00440 Bacterial regulatory proteins, tetR family CAI17_22445 PF07715 TonB-dependent Receptor Plug Domain CAI17_22445 PF00593 TonB dependent receptor CAI17_22455 PF01430 Hsp33 protein CAI17_22460 PF00912 Transglycosylase CAI17_22465 PF00535 Glycosyl transferase family 2 CAI17_22470 PF00478 IMP dehydrogenase / GMP reductase domain CAI17_22470 PF00571 CBS domain CAI17_22475 PF05170 AsmA family CAI17_22480 PF03006 Haemolysin-III related CAI17_22485 PF00009 Elongation factor Tu GTP binding domain CAI17_22485 PF16658 Class II release factor RF3, C-terminal domain CAI17_22490 PF01476 LysM domain CAI17_22490 PF08525 Opacity-associated protein A N-terminal motif CAI17_22490 PF01551 Peptidase family M23 CAI17_22495 PF00561 alpha/beta hydrolase fold CAI17_22500 PF01053 Cys/Met metabolism PLP-dependent enzyme CAI17_22505 PF00742 Homoserine dehydrogenase CAI17_22505 PF00696 Amino acid kinase family CAI17_22505 PF03447 Homoserine dehydrogenase, NAD binding domain CAI17_22515 PF12697 Alpha/beta hydrolase family CAI17_22520 PF03313 Serine dehydratase alpha chain CAI17_22520 PF03315 Serine dehydratase beta chain CAI17_22540 PF04264 YceI-like domain CAI17_22545 PF00072 Response regulator receiver domain CAI17_22545 PF01627 Hpt domain CAI17_22545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_22545 PF00512 His Kinase A (phospho-acceptor) domain CAI17_22555 PF00672 HAMP domain CAI17_22555 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI17_22555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_22555 PF01627 Hpt domain CAI17_22555 PF00512 His Kinase A (phospho-acceptor) domain CAI17_22555 PF00072 Response regulator receiver domain CAI17_22560 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI17_22560 PF00672 HAMP domain CAI17_22560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI17_22560 PF00512 His Kinase A (phospho-acceptor) domain CAI17_22560 PF01627 Hpt domain CAI17_22560 PF00072 Response regulator receiver domain CAI17_22565 PF07690 Major Facilitator Superfamily CAI17_22570 PF01208 Uroporphyrinogen decarboxylase (URO-D) CAI17_22580 PF01761 3-dehydroquinate synthase CAI17_22585 PF01202 Shikimate kinase CAI17_22590 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CAI17_22590 PF01243 Pyridoxamine 5'-phosphate oxidase CAI17_22600 PF04012 PspA/IM30 family CAI17_22625 PF03738 Glutathionylspermidine synthase preATP-grasp CAI17_22635 PF07690 Major Facilitator Superfamily CAI17_22640 PF00376 MerR family regulatory protein CAI17_22640 PF09278 MerR, DNA binding CAI17_22700 PF12706 Beta-lactamase superfamily domain CAI17_22730 PF00324 Amino acid permease CAI17_22735 PF00196 Bacterial regulatory proteins, luxR family CAI17_22745 PF00561 alpha/beta hydrolase fold CAI17_22755 PF00544 Pectate lyase CAI17_22765 PF00324 Amino acid permease CAI17_22785 PF01654 Cytochrome bd terminal oxidase subunit I CAI17_22790 PF02322 Cytochrome bd terminal oxidase subunit II CAI17_22800 PF00756 Putative esterase CAI17_22805 PF00571 CBS domain CAI17_22805 PF01769 Divalent cation transporter CAI17_22805 PF03448 MgtE intracellular N domain CAI17_22815 PF05524 PEP-utilising enzyme, N-terminal CAI17_22815 PF00391 PEP-utilising enzyme, mobile domain CAI17_22815 PF02896 PEP-utilising enzyme, TIM barrel domain CAI17_22820 PF00381 PTS HPr component phosphorylation site CAI17_22830 PF03668 P-loop ATPase protein family CAI17_22835 PF07475 HPr Serine kinase C-terminal domain CAI17_22835 PF02603 HPr Serine kinase N terminus CAI17_22840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CAI17_22845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CAI17_22850 PF04552 Sigma-54, DNA binding domain CAI17_22850 PF04963 Sigma-54 factor, core binding domain CAI17_22850 PF00309 Sigma-54 factor, Activator interacting domain (AID) CAI17_22855 PF00005 ABC transporter CAI17_22860 PF03968 OstA-like protein CAI17_22875 PF00571 CBS domain CAI17_22875 PF01380 SIS domain CAI17_22880 PF01722 BolA-like protein CAI17_22885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CAI17_22905 PF00551 Formyl transferase CAI17_22915 PF00586 AIR synthase related protein, N-terminal domain CAI17_22915 PF02769 AIR synthase related protein, C-terminal domain CAI17_22970 PF05394 Avirulence protein CAI17_23005 PF00171 Aldehyde dehydrogenase family CAI17_23005 PF01619 Proline dehydrogenase CAI17_23005 PF14850 DNA-binding domain of Proline dehydrogenase CAI17_23005 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI17_23070 PF09722 Protein of unknown function (DUF2384) CAI17_23070 PF01936 NYN domain CAI17_23115 PF02796 Helix-turn-helix domain of resolvase CAI17_23115 PF00239 Resolvase, N terminal domain CAI17_23130 PF13614 AAA domain CAI17_23160 PF01526 Tn3 transposase DDE domain CAI17_23160 PF13700 Domain of unknown function (DUF4158) CAI17_23180 PF00145 C-5 cytosine-specific DNA methylase CAI17_23205 PF00171 Aldehyde dehydrogenase family CAI17_23205 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI17_23205 PF14850 DNA-binding domain of Proline dehydrogenase CAI17_23205 PF01619 Proline dehydrogenase CAI17_23245 PF13180 PDZ domain CAI17_23245 PF00595 PDZ domain CAI17_23260 PF17841 BID domain of Bartonella effector protein (Bep) CAI17_23260 PF03389 MobA/MobL family CAI17_23260 PF01443 Viral (Superfamily 1) RNA helicase CAI17_23265 PF07820 TraC-like protein CAI17_23270 PF06412 Conjugal transfer protein TraD CAI17_23275 PF02534 Type IV secretory system Conjugative DNA transfer CAI17_23285 PF11740 Plasmid replication region DNA-binding N-term CAI17_23310 PF03695 Uncharacterised protein family (UPF0149) CAI17_23310 PF02810 SEC-C motif CAI17_23320 PF01850 PIN domain CAI17_23445 PF07015 VirC1 protein CAI17_23505 PF08751 TrwC relaxase CAI17_23505 PF18272 single-stranded DNA binding TraI N-terminal subdomain CAI17_23505 PF18340 DNA relaxase TraI 2B/2B-like domain CAI17_23505 PF07057 DNA helicase TraI CAI17_23530 PF01464 Transglycosylase SLT domain CAI17_23535 PF00437 Type II/IV secretion system protein CAI17_23540 PF03743 Bacterial conjugation TrbI-like protein CAI17_23545 PF03524 Conjugal transfer protein CAI17_23555 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CAI17_23655 PF13614 AAA domain