locus-tag class description CAI18_00005 PF11638 DnaA N-terminal domain CAI18_00005 PF08299 Bacterial dnaA protein helix-turn-helix CAI18_00005 PF00308 Bacterial dnaA protein CAI18_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CAI18_00010 PF02767 DNA polymerase III beta subunit, central domain CAI18_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CAI18_00015 PF02463 RecF/RecN/SMC N terminal domain CAI18_00020 PF01751 Toprim domain CAI18_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_00020 PF18053 DNA gyrase B subunit insert domain CAI18_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CAI18_00020 PF00204 DNA gyrase B CAI18_00030 PF01435 Peptidase family M48 CAI18_00045 PF01618 MotA/TolQ/ExbB proton channel family CAI18_00050 PF02472 Biopolymer transport protein ExbD/TolR CAI18_00055 PF02472 Biopolymer transport protein ExbD/TolR CAI18_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CAI18_00070 PF13396 Phospholipase_D-nuclease N-terminal CAI18_00070 PF13091 PLD-like domain CAI18_00105 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CAI18_00120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CAI18_00120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CAI18_00125 PF03572 Peptidase family S41 CAI18_00125 PF13180 PDZ domain CAI18_00130 PF01551 Peptidase family M23 CAI18_00140 PF04389 Peptidase family M28 CAI18_00150 PF00150 Cellulase (glycosyl hydrolase family 5) CAI18_00160 PF00150 Cellulase (glycosyl hydrolase family 5) CAI18_00170 PF00150 Cellulase (glycosyl hydrolase family 5) CAI18_00180 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_00180 PF00107 Zinc-binding dehydrogenase CAI18_00185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CAI18_00185 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_00190 PF00310 Glutamine amidotransferases class-II CAI18_00190 PF01645 Conserved region in glutamate synthase CAI18_00190 PF01493 GXGXG motif CAI18_00190 PF04898 Glutamate synthase central domain CAI18_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_00220 PF03466 LysR substrate binding domain CAI18_00240 PF02397 Bacterial sugar transferase CAI18_00245 PF02350 UDP-N-acetylglucosamine 2-epimerase CAI18_00270 PF13439 Glycosyltransferase Family 4 CAI18_00270 PF00534 Glycosyl transferases group 1 CAI18_00305 PF16363 GDP-mannose 4,6 dehydratase CAI18_00320 PF00005 ABC transporter CAI18_00320 PF00664 ABC transporter transmembrane region CAI18_00335 PF00733 Asparagine synthase CAI18_00335 PF13537 Glutamine amidotransferase domain CAI18_00350 PF07475 HPr Serine kinase C-terminal domain CAI18_00350 PF02603 HPr Serine kinase N terminus CAI18_00355 PF00685 Sulfotransferase domain CAI18_00450 PF00270 DEAD/DEAH box helicase CAI18_00450 PF09369 Domain of unknown function (DUF1998) CAI18_00450 PF00271 Helicase conserved C-terminal domain CAI18_00455 PF03006 Haemolysin-III related CAI18_00475 PF00106 short chain dehydrogenase CAI18_00495 PF02525 Flavodoxin-like fold CAI18_00520 PF05532 CsbD-like CAI18_00540 PF16485 Protealysin propeptide CAI18_00540 PF02868 Thermolysin metallopeptidase, alpha-helical domain CAI18_00540 PF01447 Thermolysin metallopeptidase, catalytic domain CAI18_00550 PF13344 Haloacid dehalogenase-like hydrolase CAI18_00550 PF00293 NUDIX domain CAI18_00565 PF00085 Thioredoxin CAI18_00575 PF08946 Osmosensory transporter coiled coil CAI18_00575 PF00083 Sugar (and other) transporter CAI18_00615 PF17863 AAA lid domain CAI18_00615 PF07726 ATPase family associated with various cellular activities (AAA) CAI18_00645 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CAI18_00650 PF00155 Aminotransferase class I and II CAI18_00665 PF07883 Cupin domain CAI18_00685 PF00239 Resolvase, N terminal domain CAI18_00685 PF02796 Helix-turn-helix domain of resolvase CAI18_00705 PF03695 Uncharacterised protein family (UPF0149) CAI18_00705 PF02810 SEC-C motif CAI18_00755 PF02796 Helix-turn-helix domain of resolvase CAI18_00755 PF00239 Resolvase, N terminal domain CAI18_00810 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CAI18_00855 PF08125 Mannitol dehydrogenase C-terminal domain CAI18_00855 PF01232 Mannitol dehydrogenase Rossmann domain CAI18_00860 PF07691 PA14 domain CAI18_00860 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI18_00860 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI18_00860 PF14310 Fibronectin type III-like domain CAI18_00865 PF04616 Glycosyl hydrolases family 43 CAI18_00865 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI18_00870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI18_00870 PF13378 Enolase C-terminal domain-like CAI18_00885 PF00356 Bacterial regulatory proteins, lacI family CAI18_00900 PF01171 PP-loop family CAI18_00905 PF04381 Putative exonuclease, RdgC CAI18_00925 PF12697 Alpha/beta hydrolase family CAI18_00930 PF00762 Ferrochelatase CAI18_00940 PF02416 mttA/Hcf106 family CAI18_00945 PF02416 mttA/Hcf106 family CAI18_00950 PF00902 Sec-independent protein translocase protein (TatC) CAI18_00960 PF00117 Glutamine amidotransferase class-I CAI18_00960 PF00958 GMP synthase C terminal domain CAI18_00980 PF02091 Glycyl-tRNA synthetase alpha subunit CAI18_01030 PF17243 POTRA domain TamA domain 1 CAI18_01030 PF01103 Surface antigen CAI18_01035 PF04357 TamB, inner membrane protein subunit of TAM complex CAI18_01055 PF13570 PQQ-like domain CAI18_01055 PF13360 PQQ-like domain CAI18_01055 PF01011 PQQ enzyme repeat CAI18_01075 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CAI18_01075 PF06165 Glycosyltransferase family 36 CAI18_01090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_01090 PF00512 His Kinase A (phospho-acceptor) domain CAI18_01095 PF02659 Putative manganese efflux pump CAI18_01105 PF09339 IclR helix-turn-helix domain CAI18_01105 PF01614 Bacterial transcriptional regulator CAI18_01110 PF07690 Major Facilitator Superfamily CAI18_01115 PF05336 L-rhamnose mutarotase CAI18_01120 PF13378 Enolase C-terminal domain-like CAI18_01120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI18_01130 PF01557 Fumarylacetoacetate (FAA) hydrolase family CAI18_01145 PF00248 Aldo/keto reductase family CAI18_01155 PF04616 Glycosyl hydrolases family 43 CAI18_01155 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI18_01185 PF00072 Response regulator receiver domain CAI18_01185 PF00196 Bacterial regulatory proteins, luxR family CAI18_01195 PF16177 Acetyl-coenzyme A synthetase N-terminus CAI18_01195 PF13193 AMP-binding enzyme C-terminal domain CAI18_01195 PF00501 AMP-binding enzyme CAI18_01205 PF04341 Protein of unknown function, DUF485 CAI18_01210 PF00474 Sodium:solute symporter family CAI18_01220 PF00639 PPIC-type PPIASE domain CAI18_01220 PF09312 SurA N-terminal domain CAI18_01230 PF00480 ROK family CAI18_01235 PF03372 Endonuclease/Exonuclease/phosphatase family CAI18_01245 PF04226 Transglycosylase associated protein CAI18_01250 PF01648 4'-phosphopantetheinyl transferase superfamily CAI18_01255 PF16655 PhoD-like phosphatase, N-terminal domain CAI18_01255 PF09423 PhoD-like phosphatase CAI18_01260 PF09423 PhoD-like phosphatase CAI18_01260 PF16655 PhoD-like phosphatase, N-terminal domain CAI18_01265 PF02527 rRNA small subunit methyltransferase G CAI18_01285 PF13533 Biotin-lipoyl like CAI18_01300 PF00873 AcrB/AcrD/AcrF family CAI18_01305 PF00830 Ribosomal L28 family CAI18_01310 PF00471 Ribosomal protein L33 CAI18_01315 PF04909 Amidohydrolase CAI18_01325 PF04303 PrpF protein CAI18_01330 PF03737 Aldolase/RraA CAI18_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_01335 PF03466 LysR substrate binding domain CAI18_01340 PF13091 PLD-like domain CAI18_01340 PF13396 Phospholipase_D-nuclease N-terminal CAI18_01355 PF00580 UvrD/REP helicase N-terminal domain CAI18_01355 PF13361 UvrD-like helicase C-terminal domain CAI18_01365 PF14602 Hexapeptide repeat of succinyl-transferase CAI18_01365 PF12464 Maltose acetyltransferase CAI18_01400 PF05638 Type VI secretion system effector, Hcp CAI18_01470 PF00328 Histidine phosphatase superfamily (branch 2) CAI18_01490 PF04542 Sigma-70 region 2 CAI18_01490 PF08281 Sigma-70, region 4 CAI18_01500 PF03793 PASTA domain CAI18_01500 PF00069 Protein kinase domain CAI18_01515 PF04717 Type VI secretion system, phage-baseplate injector CAI18_01555 PF00069 Protein kinase domain CAI18_01585 PF01367 5'-3' exonuclease, C-terminal SAM fold CAI18_01585 PF00476 DNA polymerase family A CAI18_01585 PF01612 3'-5' exonuclease CAI18_01585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CAI18_01595 PF01218 Coproporphyrinogen III oxidase CAI18_01615 PF07676 WD40-like Beta Propeller Repeat CAI18_01615 PF00326 Prolyl oligopeptidase family CAI18_01640 PF04820 Tryptophan halogenase CAI18_01645 PF00550 Phosphopantetheine attachment site CAI18_01655 PF01553 Acyltransferase CAI18_01660 PF07977 FabA-like domain CAI18_01710 PF00535 Glycosyl transferase family 2 CAI18_01720 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI18_01720 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI18_01725 PF05166 YcgL domain CAI18_01740 PF00723 Glycosyl hydrolases family 15 CAI18_01745 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CAI18_01745 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CAI18_01755 PF00999 Sodium/hydrogen exchanger family CAI18_01755 PF02254 TrkA-N domain CAI18_01760 PF00194 Eukaryotic-type carbonic anhydrase CAI18_01765 PF03448 MgtE intracellular N domain CAI18_01765 PF01769 Divalent cation transporter CAI18_01765 PF00571 CBS domain CAI18_01770 PF00583 Acetyltransferase (GNAT) family CAI18_01770 PF13380 CoA binding domain CAI18_01770 PF13607 Succinyl-CoA ligase like flavodoxin domain CAI18_01785 PF03477 ATP cone domain CAI18_01785 PF00317 Ribonucleotide reductase, all-alpha domain CAI18_01785 PF02867 Ribonucleotide reductase, barrel domain CAI18_01795 PF00268 Ribonucleotide reductase, small chain CAI18_01830 PF02558 Ketopantoate reductase PanE/ApbA CAI18_01830 PF08546 Ketopantoate reductase PanE/ApbA C terminal CAI18_01840 PF01061 ABC-2 type transporter CAI18_01845 PF00005 ABC transporter CAI18_01850 PF00175 Oxidoreductase NAD-binding domain CAI18_01850 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI18_01850 PF00970 Oxidoreductase FAD-binding domain CAI18_01855 PF12833 Helix-turn-helix domain CAI18_01855 PF01965 DJ-1/PfpI family CAI18_01865 PF07715 TonB-dependent Receptor Plug Domain CAI18_01865 PF00593 TonB dependent receptor CAI18_01875 PF16916 Dimerisation domain of Zinc Transporter CAI18_01875 PF01545 Cation efflux family CAI18_01880 PF02583 Metal-sensitive transcriptional repressor CAI18_01885 PF01229 Glycosyl hydrolases family 39 CAI18_01895 PF01381 Helix-turn-helix CAI18_01905 PF00005 ABC transporter CAI18_01945 PF00043 Glutathione S-transferase, C-terminal domain CAI18_01945 PF02798 Glutathione S-transferase, N-terminal domain CAI18_01975 PF00490 Delta-aminolevulinic acid dehydratase CAI18_02000 PF00175 Oxidoreductase NAD-binding domain CAI18_02000 PF00258 Flavodoxin CAI18_02000 PF00667 FAD binding domain CAI18_02010 PF08501 Shikimate dehydrogenase substrate binding domain CAI18_02010 PF01488 Shikimate / quinate 5-dehydrogenase CAI18_02010 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CAI18_02025 PF06733 DEAD_2 CAI18_02025 PF13307 Helicase C-terminal domain CAI18_02035 PF06628 Catalase-related immune-responsive CAI18_02035 PF00199 Catalase CAI18_02055 PF01207 Dihydrouridine synthase (Dus) CAI18_02065 PF00486 Transcriptional regulatory protein, C terminal CAI18_02065 PF00072 Response regulator receiver domain CAI18_02070 PF00512 His Kinase A (phospho-acceptor) domain CAI18_02070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_02070 PF00672 HAMP domain CAI18_02085 PF06167 Glucose-regulated metallo-peptidase M90 CAI18_02100 PF03099 Biotin/lipoate A/B protein ligase family CAI18_02100 PF08279 HTH domain CAI18_02100 PF02237 Biotin protein ligase C terminal domain CAI18_02105 PF03309 Type III pantothenate kinase CAI18_02155 PF02223 Thymidylate kinase CAI18_02185 PF00491 Arginase family CAI18_02200 PF05532 CsbD-like CAI18_02205 PF00579 tRNA synthetases class I (W and Y) CAI18_02210 PF00753 Metallo-beta-lactamase superfamily CAI18_02230 PF00892 EamA-like transporter family CAI18_02235 PF00892 EamA-like transporter family CAI18_02260 PF00005 ABC transporter CAI18_02265 PF13533 Biotin-lipoyl like CAI18_02270 PF07730 Histidine kinase CAI18_02275 PF00196 Bacterial regulatory proteins, luxR family CAI18_02275 PF00072 Response regulator receiver domain CAI18_02300 PF00199 Catalase CAI18_02315 PF02789 Cytosol aminopeptidase family, N-terminal domain CAI18_02315 PF00883 Cytosol aminopeptidase family, catalytic domain CAI18_02320 PF13419 Haloacid dehalogenase-like hydrolase CAI18_02325 PF01594 AI-2E family transporter CAI18_02345 PF00595 PDZ domain CAI18_02375 PF00512 His Kinase A (phospho-acceptor) domain CAI18_02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_02375 PF08521 Two-component sensor kinase N-terminal CAI18_02380 PF00486 Transcriptional regulatory protein, C terminal CAI18_02380 PF00072 Response regulator receiver domain CAI18_02385 PF01370 NAD dependent epimerase/dehydratase family CAI18_02385 PF08338 Domain of unknown function (DUF1731) CAI18_02420 PF01139 tRNA-splicing ligase RtcB CAI18_02440 PF00440 Bacterial regulatory proteins, tetR family CAI18_02445 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI18_02445 PF00175 Oxidoreductase NAD-binding domain CAI18_02445 PF00970 Oxidoreductase FAD-binding domain CAI18_02450 PF00487 Fatty acid desaturase CAI18_02455 PF00563 EAL domain CAI18_02455 PF12792 CSS motif domain associated with EAL CAI18_02470 PF01078 Magnesium chelatase, subunit ChlI CAI18_02470 PF13335 Magnesium chelatase, subunit ChlI C-terminal CAI18_02475 PF04380 Membrane fusogenic activity CAI18_02480 PF00543 Nitrogen regulatory protein P-II CAI18_02520 PF17284 Spermidine synthase tetramerisation domain CAI18_02525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CAI18_02525 PF17944 Arginine decarboxylase C-terminal helical extension CAI18_02525 PF17810 Arginine decarboxylase helical bundle domain CAI18_02530 PF00550 Phosphopantetheine attachment site CAI18_02530 PF00668 Condensation domain CAI18_02530 PF00501 AMP-binding enzyme CAI18_02530 PF00975 Thioesterase domain CAI18_02530 PF13193 AMP-binding enzyme C-terminal domain CAI18_02535 PF03033 Glycosyltransferase family 28 N-terminal domain CAI18_02540 PF01757 Acyltransferase family CAI18_02545 PF00106 short chain dehydrogenase CAI18_02560 PF03485 Arginyl tRNA synthetase N terminal domain CAI18_02560 PF00750 tRNA synthetases class I (R) CAI18_02560 PF05746 DALR anticodon binding domain CAI18_02565 PF04002 RadC-like JAB domain CAI18_02570 PF04127 DNA / pantothenate metabolism flavoprotein CAI18_02570 PF02441 Flavoprotein CAI18_02575 PF00692 dUTPase CAI18_02580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI18_02580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI18_02580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI18_02580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI18_02595 PF00535 Glycosyl transferase family 2 CAI18_02600 PF01370 NAD dependent epimerase/dehydratase family CAI18_02615 PF02195 ParB-like nuclease domain CAI18_02615 PF17762 HTH domain found in ParB protein CAI18_02620 PF13614 AAA domain CAI18_02630 PF00156 Phosphoribosyl transferase domain CAI18_02635 PF03372 Endonuclease/Exonuclease/phosphatase family CAI18_02640 PF07690 Major Facilitator Superfamily CAI18_02650 PF03702 Anhydro-N-acetylmuramic acid kinase CAI18_02655 PF01551 Peptidase family M23 CAI18_02655 PF04225 Opacity-associated protein A LysM-like domain CAI18_02660 PF00579 tRNA synthetases class I (W and Y) CAI18_02690 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CAI18_02690 PF06827 Zinc finger found in FPG and IleRS CAI18_02690 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CAI18_02710 PF13361 UvrD-like helicase C-terminal domain CAI18_02710 PF00580 UvrD/REP helicase N-terminal domain CAI18_02715 PF13302 Acetyltransferase (GNAT) domain CAI18_02725 PF04337 Protein of unknown function, DUF480 CAI18_02735 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CAI18_02740 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CAI18_02745 PF04820 Tryptophan halogenase CAI18_02760 PF00356 Bacterial regulatory proteins, lacI family CAI18_02775 PF01553 Acyltransferase CAI18_02780 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI18_02780 PF00698 Acyl transferase domain CAI18_02780 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_02780 PF00107 Zinc-binding dehydrogenase CAI18_02780 PF16197 Ketoacyl-synthetase C-terminal extension CAI18_02780 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI18_02780 PF08659 KR domain CAI18_02780 PF14765 Polyketide synthase dehydratase CAI18_02780 PF00550 Phosphopantetheine attachment site CAI18_02810 PF12241 Trans-2-enoyl-CoA reductase catalytic region CAI18_02810 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CAI18_02810 PF07055 Enoyl reductase FAD binding domain CAI18_02820 PF00294 pfkB family carbohydrate kinase CAI18_02895 PF11896 Domain of unknown function (DUF3416) CAI18_02895 PF00128 Alpha amylase, catalytic domain CAI18_02900 PF00128 Alpha amylase, catalytic domain CAI18_02900 PF16657 Maltogenic Amylase, C-terminal domain CAI18_02905 PF02806 Alpha amylase, C-terminal all-beta domain CAI18_02905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI18_02905 PF00128 Alpha amylase, catalytic domain CAI18_02915 PF00248 Aldo/keto reductase family CAI18_02920 PF00135 Carboxylesterase family CAI18_02925 PF07859 alpha/beta hydrolase fold CAI18_02925 PF13472 GDSL-like Lipase/Acylhydrolase family CAI18_02935 PF03480 Bacterial extracellular solute-binding protein, family 7 CAI18_02945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CAI18_02950 PF04616 Glycosyl hydrolases family 43 CAI18_02950 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI18_02955 PF00356 Bacterial regulatory proteins, lacI family CAI18_02965 PF04962 KduI/IolB family CAI18_02980 PF00657 GDSL-like Lipase/Acylhydrolase CAI18_02995 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CAI18_03000 PF01037 Lrp/AsnC ligand binding domain CAI18_03005 PF00593 TonB dependent receptor CAI18_03005 PF07660 Secretin and TonB N terminus short domain CAI18_03005 PF07715 TonB-dependent Receptor Plug Domain CAI18_03010 PF01734 Patatin-like phospholipase CAI18_03020 PF00005 ABC transporter CAI18_03035 PF00005 ABC transporter CAI18_03040 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_03050 PF03781 Sulfatase-modifying factor enzyme 1 CAI18_03050 PF12867 DinB superfamily CAI18_03105 PF10609 NUBPL iron-transfer P-loop NTPase CAI18_03105 PF01883 Iron-sulfur cluster assembly protein CAI18_03120 PF13091 PLD-like domain CAI18_03125 PF03061 Thioesterase superfamily CAI18_03155 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_03155 PF00107 Zinc-binding dehydrogenase CAI18_03165 PF02673 Bacitracin resistance protein BacA CAI18_03175 PF03951 Glutamine synthetase, beta-Grasp domain CAI18_03175 PF00120 Glutamine synthetase, catalytic domain CAI18_03180 PF00543 Nitrogen regulatory protein P-II CAI18_03185 PF00909 Ammonium Transporter Family CAI18_03190 PF00989 PAS fold CAI18_03190 PF00512 His Kinase A (phospho-acceptor) domain CAI18_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_03195 PF02954 Bacterial regulatory protein, Fis family CAI18_03195 PF00072 Response regulator receiver domain CAI18_03195 PF00158 Sigma-54 interaction domain CAI18_03200 PF00080 Copper/zinc superoxide dismutase (SODC) CAI18_03205 PF00080 Copper/zinc superoxide dismutase (SODC) CAI18_03220 PF00108 Thiolase, N-terminal domain CAI18_03220 PF02803 Thiolase, C-terminal domain CAI18_03255 PF00581 Rhodanese-like domain CAI18_03260 PF02556 Preprotein translocase subunit SecB CAI18_03265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CAI18_03265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CAI18_03310 PF01313 Bacterial export proteins, family 3 CAI18_03320 PF01312 FlhB HrpN YscU SpaS Family CAI18_03325 PF00771 FHIPEP family CAI18_03330 PF00460 Flagella basal body rod protein CAI18_03330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_03335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_03335 PF00460 Flagella basal body rod protein CAI18_03350 PF02119 Flagellar P-ring protein CAI18_03365 PF02049 Flagellar hook-basal body complex protein FliE CAI18_03370 PF01514 Secretory protein of YscJ/FliF family CAI18_03370 PF08345 Flagellar M-ring protein C-terminal CAI18_03385 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI18_03385 PF18269 T3SS EscN ATPase C-terminal domain CAI18_03385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI18_03410 PF03963 Flagellar hook capping protein - N-terminal region CAI18_03415 PF00460 Flagella basal body rod protein CAI18_03415 PF07559 Flagellar basal body protein FlaE CAI18_03415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_03425 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CAI18_03435 PF00813 FliP family CAI18_03440 PF00140 Sigma-70 factor, region 1.2 CAI18_03440 PF04545 Sigma-70, region 4 CAI18_03440 PF04542 Sigma-70 region 2 CAI18_03440 PF04539 Sigma-70 region 3 CAI18_03445 PF00205 Thiamine pyrophosphate enzyme, central domain CAI18_03445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CAI18_03445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CAI18_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_03455 PF00072 Response regulator receiver domain CAI18_03455 PF02954 Bacterial regulatory protein, Fis family CAI18_03455 PF00158 Sigma-54 interaction domain CAI18_03470 PF07690 Major Facilitator Superfamily CAI18_03475 PF00588 SpoU rRNA Methylase family CAI18_03490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI18_03490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI18_03495 PF13784 Fic/DOC family N-terminal CAI18_03495 PF02661 Fic/DOC family CAI18_03500 PF00561 alpha/beta hydrolase fold CAI18_03505 PF03692 Putative zinc- or iron-chelating domain CAI18_03510 PF00501 AMP-binding enzyme CAI18_03515 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CAI18_03540 PF03109 ABC1 family CAI18_03550 PF00849 RNA pseudouridylate synthase CAI18_03560 PF00472 RF-1 domain CAI18_03570 PF01112 Asparaginase CAI18_03575 PF01432 Peptidase family M3 CAI18_03580 PF12706 Beta-lactamase superfamily domain CAI18_03600 PF12833 Helix-turn-helix domain CAI18_03605 PF00999 Sodium/hydrogen exchanger family CAI18_03610 PF03466 LysR substrate binding domain CAI18_03610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_03615 PF01274 Malate synthase CAI18_03620 PF00463 Isocitrate lyase family CAI18_03625 PF00990 Diguanylate cyclase, GGDEF domain CAI18_03660 PF02785 Biotin carboxylase C-terminal domain CAI18_03660 PF00289 Biotin carboxylase, N-terminal domain CAI18_03660 PF00364 Biotin-requiring enzyme CAI18_03660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI18_03660 PF18140 Propionyl-coenzyme A carboxylase BT domain CAI18_03665 PF01039 Carboxyl transferase domain CAI18_03670 PF02770 Acyl-CoA dehydrogenase, middle domain CAI18_03670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_03670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_03675 PF17932 Tetracyclin repressor-like, C-terminal domain CAI18_03675 PF00440 Bacterial regulatory proteins, tetR family CAI18_03730 PF02492 CobW/HypB/UreG, nucleotide-binding domain CAI18_03730 PF07683 Cobalamin synthesis protein cobW C-terminal domain CAI18_03750 PF03969 AFG1-like ATPase CAI18_03755 PF01047 MarR family CAI18_03760 PF02566 OsmC-like protein CAI18_03790 PF16884 N-terminal domain of oxidoreductase CAI18_03790 PF00107 Zinc-binding dehydrogenase CAI18_03795 PF00248 Aldo/keto reductase family CAI18_03805 PF00849 RNA pseudouridylate synthase CAI18_03820 PF08482 ATP-dependent helicase C-terminal CAI18_03820 PF00271 Helicase conserved C-terminal domain CAI18_03820 PF04408 Helicase associated domain (HA2) CAI18_03820 PF00270 DEAD/DEAH box helicase CAI18_03825 PF07308 Protein of unknown function (DUF1456) CAI18_03830 PF00576 HIUase/Transthyretin family CAI18_03835 PF13454 FAD-NAD(P)-binding CAI18_03840 PF09349 OHCU decarboxylase CAI18_03840 PF01014 Uricase CAI18_03855 PF00266 Aminotransferase class-V CAI18_03860 PF07687 Peptidase dimerisation domain CAI18_03860 PF01546 Peptidase family M20/M25/M40 CAI18_03865 PF03466 LysR substrate binding domain CAI18_03865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_03870 PF07690 Major Facilitator Superfamily CAI18_03885 PF01425 Amidase CAI18_03890 PF01156 Inosine-uridine preferring nucleoside hydrolase CAI18_03900 PF00860 Permease family CAI18_03910 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI18_03915 PF00355 Rieske [2Fe-2S] domain CAI18_03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_03920 PF03466 LysR substrate binding domain CAI18_03925 PF01026 TatD related DNase CAI18_03945 PF03466 LysR substrate binding domain CAI18_03945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_03950 PF07690 Major Facilitator Superfamily CAI18_03965 PF02146 Sir2 family CAI18_03970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CAI18_03975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CAI18_03975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CAI18_03985 PF00551 Formyl transferase CAI18_03990 PF00486 Transcriptional regulatory protein, C terminal CAI18_03990 PF00072 Response regulator receiver domain CAI18_03995 PF00672 HAMP domain CAI18_03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_03995 PF00512 His Kinase A (phospho-acceptor) domain CAI18_04000 PF00529 HlyD membrane-fusion protein of T1SS CAI18_04000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_04005 PF00873 AcrB/AcrD/AcrF family CAI18_04010 PF02321 Outer membrane efflux protein CAI18_04025 PF02677 Epoxyqueuosine reductase QueH CAI18_04030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_04030 PF03466 LysR substrate binding domain CAI18_04035 PF03358 NADPH-dependent FMN reductase CAI18_04045 PF08267 Cobalamin-independent synthase, N-terminal domain CAI18_04045 PF01717 Cobalamin-independent synthase, Catalytic domain CAI18_04050 PF03812 2-keto-3-deoxygluconate permease CAI18_04065 PF05368 NmrA-like family CAI18_04070 PF01638 HxlR-like helix-turn-helix CAI18_04115 PF00920 Dehydratase family CAI18_04130 PF00132 Bacterial transferase hexapeptide (six repeats) CAI18_04140 PF07690 Major Facilitator Superfamily CAI18_04145 PF01966 HD domain CAI18_04145 PF11871 Domain of unknown function (DUF3391) CAI18_04170 PF00171 Aldehyde dehydrogenase family CAI18_04180 PF01494 FAD binding domain CAI18_04190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CAI18_04190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CAI18_04195 PF00230 Major intrinsic protein CAI18_04200 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CAI18_04200 PF01266 FAD dependent oxidoreductase CAI18_04205 PF08220 DeoR-like helix-turn-helix domain CAI18_04205 PF00455 DeoR C terminal sensor domain CAI18_04215 PF00970 Oxidoreductase FAD-binding domain CAI18_04215 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI18_04220 PF00355 Rieske [2Fe-2S] domain CAI18_04225 PF01144 Coenzyme A transferase CAI18_04230 PF01144 Coenzyme A transferase CAI18_04235 PF02803 Thiolase, C-terminal domain CAI18_04235 PF00108 Thiolase, N-terminal domain CAI18_04240 PF00775 Dioxygenase CAI18_04240 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CAI18_04250 PF00206 Lyase CAI18_04250 PF10397 Adenylosuccinate lyase C-terminus CAI18_04255 PF12146 Serine aminopeptidase, S33 CAI18_04260 PF02627 Carboxymuconolactone decarboxylase family CAI18_04270 PF09339 IclR helix-turn-helix domain CAI18_04270 PF01614 Bacterial transcriptional regulator CAI18_04280 PF07859 alpha/beta hydrolase fold CAI18_04285 PF10677 Protein of unknown function (DUF2490) CAI18_04290 PF01134 Glucose inhibited division protein A CAI18_04290 PF13932 GidA associated domain CAI18_04300 PF00291 Pyridoxal-phosphate dependent enzyme CAI18_04320 PF13649 Methyltransferase domain CAI18_04330 PF12697 Alpha/beta hydrolase family CAI18_04340 PF00155 Aminotransferase class I and II CAI18_04345 PF04055 Radical SAM superfamily CAI18_04345 PF06968 Biotin and Thiamin Synthesis associated domain CAI18_04355 PF01040 UbiA prenyltransferase family CAI18_04385 PF05819 NolX protein CAI18_04425 PF01313 Bacterial export proteins, family 3 CAI18_04430 PF00813 FliP family CAI18_04445 PF00771 FHIPEP family CAI18_04450 PF01312 FlhB HrpN YscU SpaS Family CAI18_04465 PF01514 Secretory protein of YscJ/FliF family CAI18_04480 PF18269 T3SS EscN ATPase C-terminal domain CAI18_04480 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI18_04480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI18_04490 PF01311 Bacterial export proteins, family 1 CAI18_04495 PF00263 Bacterial type II and III secretion system protein CAI18_04495 PF03958 Bacterial type II/III secretion system short domain CAI18_04505 PF01464 Transglycosylase SLT domain CAI18_04520 PF12794 Mechanosensitive ion channel inner membrane domain 1 CAI18_04520 PF00924 Mechanosensitive ion channel CAI18_04520 PF12795 Mechanosensitive ion channel porin domain CAI18_04525 PF00884 Sulfatase CAI18_04535 PF03109 ABC1 family CAI18_04540 PF05661 Protein of unknown function (DUF808) CAI18_04545 PF00072 Response regulator receiver domain CAI18_04545 PF00990 Diguanylate cyclase, GGDEF domain CAI18_04550 PF00534 Glycosyl transferases group 1 CAI18_04550 PF08323 Starch synthase catalytic domain CAI18_04555 PF00128 Alpha amylase, catalytic domain CAI18_04555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI18_04555 PF02806 Alpha amylase, C-terminal all-beta domain CAI18_04560 PF11941 Domain of unknown function (DUF3459) CAI18_04560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI18_04560 PF00128 Alpha amylase, catalytic domain CAI18_04565 PF02446 4-alpha-glucanotransferase CAI18_04570 PF00128 Alpha amylase, catalytic domain CAI18_04580 PF00128 Alpha amylase, catalytic domain CAI18_04580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI18_04585 PF13460 NAD(P)H-binding CAI18_04605 PF06903 VirK protein CAI18_04610 PF02321 Outer membrane efflux protein CAI18_04625 PF00873 AcrB/AcrD/AcrF family CAI18_04645 PF00271 Helicase conserved C-terminal domain CAI18_04645 PF00270 DEAD/DEAH box helicase CAI18_04650 PF02817 e3 binding domain CAI18_04650 PF00364 Biotin-requiring enzyme CAI18_04650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI18_04660 PF02779 Transketolase, pyrimidine binding domain CAI18_04660 PF02780 Transketolase, C-terminal domain CAI18_04665 PF00676 Dehydrogenase E1 component CAI18_04680 PF03301 Tryptophan 2,3-dioxygenase CAI18_04685 PF00854 POT family CAI18_04695 PF01047 MarR family CAI18_04700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CAI18_04710 PF04209 homogentisate 1,2-dioxygenase CAI18_04730 PF03334 Na+/H+ antiporter subunit CAI18_04735 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CAI18_04745 PF00361 Proton-conducting membrane transporter CAI18_04750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CAI18_04755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI18_04755 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CAI18_04755 PF13244 Domain of unknown function (DUF4040) CAI18_04755 PF00361 Proton-conducting membrane transporter CAI18_04770 PF02868 Thermolysin metallopeptidase, alpha-helical domain CAI18_04770 PF01447 Thermolysin metallopeptidase, catalytic domain CAI18_04770 PF07504 Fungalysin/Thermolysin Propeptide Motif CAI18_04770 PF01483 Proprotein convertase P-domain CAI18_04780 PF00182 Chitinase class I CAI18_04800 PF01259 SAICAR synthetase CAI18_04805 PF05099 Tellurite resistance protein TerB CAI18_04805 PF00226 DnaJ domain CAI18_04815 PF00834 Ribulose-phosphate 3 epimerase family CAI18_04820 PF00583 Acetyltransferase (GNAT) family CAI18_04825 PF00781 Diacylglycerol kinase catalytic domain CAI18_04830 PF04715 Anthranilate synthase component I, N terminal region CAI18_04830 PF00425 chorismate binding enzyme CAI18_04840 PF00117 Glutamine amidotransferase class-I CAI18_04850 PF02885 Glycosyl transferase family, helical bundle domain CAI18_04850 PF00591 Glycosyl transferase family, a/b domain CAI18_04855 PF00218 Indole-3-glycerol phosphate synthase CAI18_04865 PF00325 Bacterial regulatory proteins, crp family CAI18_04865 PF00027 Cyclic nucleotide-binding domain CAI18_04870 PF02675 S-adenosylmethionine decarboxylase CAI18_04875 PF00893 Small Multidrug Resistance protein CAI18_04880 PF03232 Ubiquinone biosynthesis protein COQ7 CAI18_04885 PF00572 Ribosomal protein L13 CAI18_04890 PF00380 Ribosomal protein S9/S16 CAI18_04905 PF00293 NUDIX domain CAI18_04915 PF00210 Ferritin-like domain CAI18_04920 PF00672 HAMP domain CAI18_04920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI18_04920 PF00072 Response regulator receiver domain CAI18_04920 PF01627 Hpt domain CAI18_04920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_04920 PF00512 His Kinase A (phospho-acceptor) domain CAI18_04925 PF00486 Transcriptional regulatory protein, C terminal CAI18_04925 PF00072 Response regulator receiver domain CAI18_04945 PF01521 Iron-sulphur cluster biosynthesis CAI18_04960 PF09297 NADH pyrophosphatase zinc ribbon domain CAI18_04960 PF00293 NUDIX domain CAI18_04960 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CAI18_04965 PF03186 CobD/Cbib protein CAI18_04965 PF17113 Regulatory signalling modulator protein AmpE CAI18_04985 PF07690 Major Facilitator Superfamily CAI18_04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_04990 PF03466 LysR substrate binding domain CAI18_04995 PF07690 Major Facilitator Superfamily CAI18_05000 PF12805 FUSC-like inner membrane protein yccS CAI18_05010 PF02844 Phosphoribosylglycinamide synthetase, N domain CAI18_05010 PF02843 Phosphoribosylglycinamide synthetase, C domain CAI18_05010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CAI18_05020 PF01808 AICARFT/IMPCHase bienzyme CAI18_05020 PF02142 MGS-like domain CAI18_05025 PF01066 CDP-alcohol phosphatidyltransferase CAI18_05030 PF12147 Putative methyltransferase CAI18_05030 PF12146 Serine aminopeptidase, S33 CAI18_05035 PF00782 Dual specificity phosphatase, catalytic domain CAI18_05065 PF02954 Bacterial regulatory protein, Fis family CAI18_05080 PF01381 Helix-turn-helix CAI18_05110 PF02785 Biotin carboxylase C-terminal domain CAI18_05110 PF00289 Biotin carboxylase, N-terminal domain CAI18_05110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI18_05120 PF00364 Biotin-requiring enzyme CAI18_05125 PF01220 Dehydroquinase class II CAI18_05130 PF11412 Disulphide bond corrector protein DsbC CAI18_05130 PF02683 Cytochrome C biogenesis protein transmembrane region CAI18_05135 PF03091 CutA1 divalent ion tolerance protein CAI18_05150 PF01852 START domain CAI18_05165 PF00106 short chain dehydrogenase CAI18_05175 PF04231 Endonuclease I CAI18_05180 PF00166 Chaperonin 10 Kd subunit CAI18_05185 PF00118 TCP-1/cpn60 chaperonin family CAI18_05195 PF07715 TonB-dependent Receptor Plug Domain CAI18_05195 PF00593 TonB dependent receptor CAI18_05200 PF00793 DAHP synthetase I family CAI18_05215 PF08450 SMP-30/Gluconolactonase/LRE-like region CAI18_05225 PF08335 GlnD PII-uridylyltransferase CAI18_05225 PF03710 Glutamate-ammonia ligase adenylyltransferase CAI18_05230 PF02592 Putative vitamin uptake transporter CAI18_05250 PF00881 Nitroreductase family CAI18_05255 PF04264 YceI-like domain CAI18_05280 PF16957 Malonate decarboxylase, alpha subunit, transporter CAI18_05285 PF06857 Malonate decarboxylase delta subunit (MdcD) CAI18_05290 PF01039 Carboxyl transferase domain CAI18_05300 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CAI18_05320 PF07729 FCD domain CAI18_05320 PF00392 Bacterial regulatory proteins, gntR family CAI18_05325 PF13419 Haloacid dehalogenase-like hydrolase CAI18_05355 PF07745 Glycosyl hydrolase family 53 CAI18_05360 PF00456 Transketolase, thiamine diphosphate binding domain CAI18_05360 PF17831 Pyruvate dehydrogenase E1 component middle domain CAI18_05395 PF00106 short chain dehydrogenase CAI18_05410 PF00106 short chain dehydrogenase CAI18_05425 PF13409 Glutathione S-transferase, N-terminal domain CAI18_05450 PF12823 Domain of unknown function (DUF3817) CAI18_05450 PF03176 MMPL family CAI18_05460 PF00326 Prolyl oligopeptidase family CAI18_05460 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CAI18_05470 PF07759 Protein of unknown function (DUF1615) CAI18_05480 PF05230 MASE2 domain CAI18_05480 PF00990 Diguanylate cyclase, GGDEF domain CAI18_05505 PF00892 EamA-like transporter family CAI18_05510 PF00497 Bacterial extracellular solute-binding proteins, family 3 CAI18_05520 PF00324 Amino acid permease CAI18_05530 PF01544 CorA-like Mg2+ transporter protein CAI18_05540 PF01204 Trehalase CAI18_05590 PF08448 PAS fold CAI18_05590 PF08447 PAS fold CAI18_05590 PF00563 EAL domain CAI18_05590 PF00990 Diguanylate cyclase, GGDEF domain CAI18_05600 PF00672 HAMP domain CAI18_05600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_05600 PF02203 Tar ligand binding domain homologue CAI18_05605 PF00553 Cellulose binding domain CAI18_05605 PF00150 Cellulase (glycosyl hydrolase family 5) CAI18_05610 PF00916 Sulfate permease family CAI18_05610 PF01740 STAS domain CAI18_05620 PF00990 Diguanylate cyclase, GGDEF domain CAI18_05620 PF08448 PAS fold CAI18_05640 PF13632 Glycosyl transferase family group 2 CAI18_05650 PF07694 5TMR of 5TMR-LYT CAI18_05650 PF06580 Histidine kinase CAI18_05655 PF00072 Response regulator receiver domain CAI18_05655 PF04397 LytTr DNA-binding domain CAI18_05660 PF03900 Porphobilinogen deaminase, C-terminal domain CAI18_05660 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CAI18_05700 PF00326 Prolyl oligopeptidase family CAI18_05700 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CAI18_05710 PF00155 Aminotransferase class I and II CAI18_05715 PF00326 Prolyl oligopeptidase family CAI18_05715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CAI18_05720 PF04304 Protein of unknown function (DUF454) CAI18_05730 PF01678 Diaminopimelate epimerase CAI18_05740 PF02899 Phage integrase, N-terminal SAM-like domain CAI18_05740 PF00589 Phage integrase family CAI18_05745 PF00227 Proteasome subunit CAI18_05750 PF10431 C-terminal, D2-small domain, of ClpB protein CAI18_05750 PF00004 ATPase family associated with various cellular activities (AAA) CAI18_05750 PF07724 AAA domain (Cdc48 subfamily) CAI18_05760 PF13673 Acetyltransferase (GNAT) domain CAI18_05765 PF13533 Biotin-lipoyl like CAI18_05775 PF01209 ubiE/COQ5 methyltransferase family CAI18_05780 PF17156 Gammaproteobacterial periplasmic sensor domain CAI18_05780 PF00990 Diguanylate cyclase, GGDEF domain CAI18_05785 PF01433 Peptidase family M1 domain CAI18_05785 PF11838 ERAP1-like C-terminal domain CAI18_05820 PF03193 RsgA GTPase CAI18_05835 PF00128 Alpha amylase, catalytic domain CAI18_05850 PF00356 Bacterial regulatory proteins, lacI family CAI18_05855 PF00106 short chain dehydrogenase CAI18_05860 PF03600 Citrate transporter CAI18_05875 PF00486 Transcriptional regulatory protein, C terminal CAI18_05875 PF00072 Response regulator receiver domain CAI18_05880 PF08521 Two-component sensor kinase N-terminal CAI18_05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_05880 PF00512 His Kinase A (phospho-acceptor) domain CAI18_05895 PF00196 Bacterial regulatory proteins, luxR family CAI18_05895 PF00072 Response regulator receiver domain CAI18_05915 PF00248 Aldo/keto reductase family CAI18_05925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_05925 PF03466 LysR substrate binding domain CAI18_05935 PF07690 Major Facilitator Superfamily CAI18_05945 PF02743 Cache domain CAI18_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_05945 PF00512 His Kinase A (phospho-acceptor) domain CAI18_05955 PF00375 Sodium:dicarboxylate symporter family CAI18_05960 PF01515 Phosphate acetyl/butaryl transferase CAI18_05960 PF03949 Malic enzyme, NAD binding domain CAI18_05960 PF00390 Malic enzyme, N-terminal domain CAI18_05985 PF03279 Bacterial lipid A biosynthesis acyltransferase CAI18_05990 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CAI18_05995 PF02321 Outer membrane efflux protein CAI18_06010 PF00990 Diguanylate cyclase, GGDEF domain CAI18_06010 PF17151 Periplasmic sensor domain CAI18_06015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_06020 PF00330 Aconitase family (aconitate hydratase) CAI18_06025 PF00694 Aconitase C-terminal domain CAI18_06030 PF00180 Isocitrate/isopropylmalate dehydrogenase CAI18_06035 PF08502 LeuA allosteric (dimerisation) domain CAI18_06035 PF00682 HMGL-like CAI18_06040 PF00291 Pyridoxal-phosphate dependent enzyme CAI18_06050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CAI18_06050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CAI18_06050 PF00205 Thiamine pyrophosphate enzyme, central domain CAI18_06055 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CAI18_06055 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CAI18_06065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_06065 PF02203 Tar ligand binding domain homologue CAI18_06065 PF00672 HAMP domain CAI18_06070 PF00593 TonB dependent receptor CAI18_06070 PF07715 TonB-dependent Receptor Plug Domain CAI18_06080 PF13667 ThiC-associated domain CAI18_06080 PF01964 Radical SAM ThiC family CAI18_06085 PF00486 Transcriptional regulatory protein, C terminal CAI18_06085 PF18500 CadC C-terminal domain 1 CAI18_06090 PF12833 Helix-turn-helix domain CAI18_06115 PF00719 Inorganic pyrophosphatase CAI18_06125 PF03030 Inorganic H+ pyrophosphatase CAI18_06165 PF01062 Bestrophin, RFP-TM, chloride channel CAI18_06170 PF01569 PAP2 superfamily CAI18_06190 PF00520 Ion transport protein CAI18_06190 PF00027 Cyclic nucleotide-binding domain CAI18_06195 PF00202 Aminotransferase class-III CAI18_06210 PF01593 Flavin containing amine oxidoreductase CAI18_06215 PF00034 Cytochrome c CAI18_06215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CAI18_06225 PF00155 Aminotransferase class I and II CAI18_06230 PF00127 Copper binding proteins, plastocyanin/azurin family CAI18_06235 PF00196 Bacterial regulatory proteins, luxR family CAI18_06235 PF17874 MalT-like TPR region CAI18_06240 PF00202 Aminotransferase class-III CAI18_06250 PF02581 Thiamine monophosphate synthase CAI18_06255 PF00301 Rubredoxin CAI18_06260 PF13369 Transglutaminase-like superfamily CAI18_06270 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CAI18_06280 PF01812 5-formyltetrahydrofolate cyclo-ligase family CAI18_06290 PF05164 Cell division protein ZapA CAI18_06300 PF03695 Uncharacterised protein family (UPF0149) CAI18_06305 PF05195 Aminopeptidase P, N-terminal domain CAI18_06305 PF00557 Metallopeptidase family M24 CAI18_06315 PF00557 Metallopeptidase family M24 CAI18_06330 PF04055 Radical SAM superfamily CAI18_06330 PF06969 HemN C-terminal domain CAI18_06335 PF01725 Ham1 family CAI18_06345 PF01138 3' exoribonuclease family, domain 1 CAI18_06345 PF03725 3' exoribonuclease family, domain 2 CAI18_06350 PF08340 Domain of unknown function (DUF1732) CAI18_06350 PF03755 YicC-like family, N-terminal region CAI18_06355 PF00625 Guanylate kinase CAI18_06360 PF01192 RNA polymerase Rpb6 CAI18_06365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CAI18_06365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CAI18_06375 PF08402 TOBE domain CAI18_06375 PF00005 ABC transporter CAI18_06380 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_06385 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_06390 PF04966 Carbohydrate-selective porin, OprB family CAI18_06405 PF04198 Putative sugar-binding domain CAI18_06410 PF13419 Haloacid dehalogenase-like hydrolase CAI18_06415 PF02824 TGS domain CAI18_06415 PF04607 Region found in RelA / SpoT proteins CAI18_06415 PF13291 ACT domain CAI18_06420 PF01042 Endoribonuclease L-PSP CAI18_06425 PF17191 RecG wedge domain CAI18_06425 PF00271 Helicase conserved C-terminal domain CAI18_06425 PF00270 DEAD/DEAH box helicase CAI18_06430 PF01156 Inosine-uridine preferring nucleoside hydrolase CAI18_06435 PF01197 Ribosomal protein L31 CAI18_06440 PF00285 Citrate synthase, C-terminal domain CAI18_06455 PF17092 Penicillin-binding protein OB-like domain CAI18_06455 PF00912 Transglycosylase CAI18_06455 PF00905 Penicillin binding protein transpeptidase domain CAI18_06485 PF07726 ATPase family associated with various cellular activities (AAA) CAI18_06485 PF17863 AAA lid domain CAI18_06505 PF07584 Aerotolerance regulator N-terminal CAI18_06505 PF00092 von Willebrand factor type A domain CAI18_06520 PF00375 Sodium:dicarboxylate symporter family CAI18_06525 PF00456 Transketolase, thiamine diphosphate binding domain CAI18_06525 PF02780 Transketolase, C-terminal domain CAI18_06525 PF02779 Transketolase, pyrimidine binding domain CAI18_06530 PF12146 Serine aminopeptidase, S33 CAI18_06535 PF07715 TonB-dependent Receptor Plug Domain CAI18_06535 PF00593 TonB dependent receptor CAI18_06545 PF04225 Opacity-associated protein A LysM-like domain CAI18_06545 PF01551 Peptidase family M23 CAI18_06555 PF01476 LysM domain CAI18_06555 PF03734 L,D-transpeptidase catalytic domain CAI18_06590 PF00005 ABC transporter CAI18_06590 PF03459 TOBE domain CAI18_06595 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_06605 PF04273 Putative phosphatase (DUF442) CAI18_06605 PF00753 Metallo-beta-lactamase superfamily CAI18_06615 PF03922 OmpW family CAI18_06620 PF03922 OmpW family CAI18_06635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CAI18_06635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CAI18_06660 PF00162 Phosphoglycerate kinase CAI18_06670 PF00224 Pyruvate kinase, barrel domain CAI18_06670 PF02887 Pyruvate kinase, alpha/beta domain CAI18_06675 PF00274 Fructose-bisphosphate aldolase class-I CAI18_06680 PF01661 Macro domain CAI18_06690 PF00291 Pyridoxal-phosphate dependent enzyme CAI18_06695 PF10414 Sirohaem synthase dimerisation region CAI18_06695 PF14824 Sirohaem biosynthesis protein central CAI18_06695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CAI18_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_06700 PF03466 LysR substrate binding domain CAI18_06715 PF01627 Hpt domain CAI18_06715 PF00072 Response regulator receiver domain CAI18_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_06715 PF00512 His Kinase A (phospho-acceptor) domain CAI18_06735 PF01507 Phosphoadenosine phosphosulfate reductase family CAI18_06740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CAI18_06740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CAI18_06745 PF00667 FAD binding domain CAI18_06745 PF00258 Flavodoxin CAI18_06745 PF00175 Oxidoreductase NAD-binding domain CAI18_06750 PF01507 Phosphoadenosine phosphosulfate reductase family CAI18_06755 PF00009 Elongation factor Tu GTP binding domain CAI18_06760 PF00529 HlyD membrane-fusion protein of T1SS CAI18_06760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_06765 PF00873 AcrB/AcrD/AcrF family CAI18_06835 PF08032 RNA 2'-O ribose methyltransferase substrate binding CAI18_06835 PF00588 SpoU rRNA Methylase family CAI18_06840 PF00135 Carboxylesterase family CAI18_06850 PF10566 Glycoside hydrolase 97 CAI18_06850 PF14508 Glycosyl-hydrolase 97 N-terminal CAI18_06850 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CAI18_06855 PF00703 Glycosyl hydrolases family 2 CAI18_06855 PF02837 Glycosyl hydrolases family 2, sugar binding domain CAI18_06855 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain CAI18_06865 PF00356 Bacterial regulatory proteins, lacI family CAI18_06875 PF01741 Large-conductance mechanosensitive channel, MscL CAI18_06880 PF01557 Fumarylacetoacetate (FAA) hydrolase family CAI18_06900 PF02080 TrkA-C domain CAI18_06900 PF03600 Citrate transporter CAI18_06905 PF02390 Putative methyltransferase CAI18_06915 PF05690 Thiazole biosynthesis protein ThiG CAI18_06925 PF00657 GDSL-like Lipase/Acylhydrolase CAI18_06925 PF03797 Autotransporter beta-domain CAI18_06955 PF00128 Alpha amylase, catalytic domain CAI18_06955 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CAI18_06960 PF18030 RimK PreATP-grasp domain CAI18_06960 PF08443 RimK-like ATP-grasp domain CAI18_06970 PF00486 Transcriptional regulatory protein, C terminal CAI18_06970 PF00072 Response regulator receiver domain CAI18_06975 PF16736 Single Cache-like CAI18_06975 PF00989 PAS fold CAI18_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_06975 PF00512 His Kinase A (phospho-acceptor) domain CAI18_07070 PF00034 Cytochrome c CAI18_07070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CAI18_07070 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CAI18_07080 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_07080 PF00107 Zinc-binding dehydrogenase CAI18_07090 PF00158 Sigma-54 interaction domain CAI18_07090 PF01590 GAF domain CAI18_07090 PF02954 Bacterial regulatory protein, Fis family CAI18_07095 PF00294 pfkB family carbohydrate kinase CAI18_07105 PF04085 rod shape-determining protein MreC CAI18_07115 PF00905 Penicillin binding protein transpeptidase domain CAI18_07115 PF03717 Penicillin-binding Protein dimerisation domain CAI18_07120 PF01098 Cell cycle protein CAI18_07125 PF00295 Glycosyl hydrolases family 28 CAI18_07130 PF13406 Transglycosylase SLT domain CAI18_07135 PF05036 Sporulation related domain CAI18_07135 PF03330 Lytic transglycolase CAI18_07145 PF00768 D-alanyl-D-alanine carboxypeptidase CAI18_07145 PF07943 Penicillin-binding protein 5, C-terminal domain CAI18_07155 PF04359 Protein of unknown function (DUF493) CAI18_07160 PF03099 Biotin/lipoate A/B protein ligase family CAI18_07165 PF04055 Radical SAM superfamily CAI18_07165 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CAI18_07170 PF03572 Peptidase family S41 CAI18_07170 PF17804 Tail specific protease N-terminal domain CAI18_07170 PF11818 C-terminal domain of tail specific protease (DUF3340) CAI18_07170 PF00595 PDZ domain CAI18_07180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_07180 PF03466 LysR substrate binding domain CAI18_07190 PF00293 NUDIX domain CAI18_07190 PF01467 Cytidylyltransferase-like CAI18_07225 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CAI18_07225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CAI18_07230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CAI18_07230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CAI18_07235 PF04972 BON domain CAI18_07240 PF01590 GAF domain CAI18_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_07240 PF00512 His Kinase A (phospho-acceptor) domain CAI18_07240 PF00360 Phytochrome region CAI18_07240 PF08446 PAS fold CAI18_07245 PF00072 Response regulator receiver domain CAI18_07250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_07250 PF00512 His Kinase A (phospho-acceptor) domain CAI18_07255 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CAI18_07305 PF00263 Bacterial type II and III secretion system protein CAI18_07305 PF03958 Bacterial type II/III secretion system short domain CAI18_07310 PF00437 Type II/IV secretion system protein CAI18_07315 PF00482 Type II secretion system (T2SS), protein F CAI18_07320 PF08334 Type II secretion system (T2SS), protein G CAI18_07320 PF07963 Prokaryotic N-terminal methylation motif CAI18_07325 PF07963 Prokaryotic N-terminal methylation motif CAI18_07325 PF12019 Type II transport protein GspH CAI18_07330 PF02501 Type II secretion system (T2SS), protein I CAI18_07330 PF07963 Prokaryotic N-terminal methylation motif CAI18_07335 PF11612 Type II secretion system (T2SS), protein J CAI18_07335 PF07963 Prokaryotic N-terminal methylation motif CAI18_07340 PF03934 Type II secretion system (T2SS), protein K CAI18_07365 PF02837 Glycosyl hydrolases family 2, sugar binding domain CAI18_07365 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CAI18_07365 PF00703 Glycosyl hydrolases family 2 CAI18_07365 PF16355 Domain of unknown function (DUF4982) CAI18_07365 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CAI18_07380 PF07702 UTRA domain CAI18_07380 PF00392 Bacterial regulatory proteins, gntR family CAI18_07385 PF07690 Major Facilitator Superfamily CAI18_07390 PF00356 Bacterial regulatory proteins, lacI family CAI18_07395 PF01380 SIS domain CAI18_07400 PF01979 Amidohydrolase family CAI18_07410 PF12627 Probable RNA and SrmB- binding site of polymerase A CAI18_07410 PF01743 Poly A polymerase head domain CAI18_07410 PF01966 HD domain CAI18_07415 PF05199 GMC oxidoreductase CAI18_07415 PF00732 GMC oxidoreductase CAI18_07420 PF00171 Aldehyde dehydrogenase family CAI18_07425 PF02028 BCCT, betaine/carnitine/choline family transporter CAI18_07450 PF00034 Cytochrome c CAI18_07455 PF01926 50S ribosome-binding GTPase CAI18_07460 PF00753 Metallo-beta-lactamase superfamily CAI18_07460 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CAI18_07460 PF10996 Beta-Casp domain CAI18_07475 PF04107 Glutamate-cysteine ligase family 2(GCS2) CAI18_07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_07480 PF00512 His Kinase A (phospho-acceptor) domain CAI18_07480 PF00672 HAMP domain CAI18_07485 PF00486 Transcriptional regulatory protein, C terminal CAI18_07485 PF00072 Response regulator receiver domain CAI18_07500 PF02583 Metal-sensitive transcriptional repressor CAI18_07505 PF00107 Zinc-binding dehydrogenase CAI18_07505 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_07510 PF04828 Glutathione-dependent formaldehyde-activating enzyme CAI18_07515 PF00756 Putative esterase CAI18_07525 PF00392 Bacterial regulatory proteins, gntR family CAI18_07525 PF00155 Aminotransferase class I and II CAI18_07530 PF02567 Phenazine biosynthesis-like protein CAI18_07535 PF00892 EamA-like transporter family CAI18_07545 PF12848 ABC transporter CAI18_07545 PF00005 ABC transporter CAI18_07555 PF00464 Serine hydroxymethyltransferase CAI18_07560 PF03477 ATP cone domain CAI18_07570 PF01872 RibD C-terminal domain CAI18_07570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CAI18_07580 PF00677 Lumazine binding domain CAI18_07585 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CAI18_07585 PF00925 GTP cyclohydrolase II CAI18_07590 PF00885 6,7-dimethyl-8-ribityllumazine synthase CAI18_07595 PF01029 NusB family CAI18_07600 PF00586 AIR synthase related protein, N-terminal domain CAI18_07600 PF02769 AIR synthase related protein, C-terminal domain CAI18_07625 PF03814 Potassium-transporting ATPase A subunit CAI18_07635 PF02669 K+-transporting ATPase, c chain CAI18_07640 PF13492 GAF domain CAI18_07640 PF00512 His Kinase A (phospho-acceptor) domain CAI18_07640 PF13493 Domain of unknown function (DUF4118) CAI18_07640 PF02702 Osmosensitive K+ channel His kinase sensor domain CAI18_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_07645 PF00486 Transcriptional regulatory protein, C terminal CAI18_07645 PF00072 Response regulator receiver domain CAI18_07675 PF02913 FAD linked oxidases, C-terminal domain CAI18_07675 PF01565 FAD binding domain CAI18_07680 PF04307 LexA-binding, inner membrane-associated putative hydrolase CAI18_07685 PF02021 Uncharacterised protein family UPF0102 CAI18_07695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CAI18_07720 PF02381 MraZ protein, putative antitoxin-like CAI18_07725 PF01795 MraW methylase family CAI18_07730 PF04999 Cell division protein FtsL CAI18_07735 PF03717 Penicillin-binding Protein dimerisation domain CAI18_07735 PF00905 Penicillin binding protein transpeptidase domain CAI18_07740 PF01225 Mur ligase family, catalytic domain CAI18_07740 PF08245 Mur ligase middle domain CAI18_07740 PF02875 Mur ligase family, glutamate ligase domain CAI18_07745 PF08245 Mur ligase middle domain CAI18_07745 PF02875 Mur ligase family, glutamate ligase domain CAI18_07745 PF01225 Mur ligase family, catalytic domain CAI18_07750 PF00953 Glycosyl transferase family 4 CAI18_07755 PF01098 Cell cycle protein CAI18_07760 PF04101 Glycosyltransferase family 28 C-terminal domain CAI18_07760 PF03033 Glycosyltransferase family 28 N-terminal domain CAI18_07765 PF01225 Mur ligase family, catalytic domain CAI18_07765 PF02875 Mur ligase family, glutamate ligase domain CAI18_07765 PF08245 Mur ligase middle domain CAI18_07770 PF01820 D-ala D-ala ligase N-terminus CAI18_07770 PF07478 D-ala D-ala ligase C-terminus CAI18_07775 PF08478 POTRA domain, FtsQ-type CAI18_07775 PF03799 Cell division protein FtsQ CAI18_07780 PF02491 SHS2 domain inserted in FTSA CAI18_07785 PF00091 Tubulin/FtsZ family, GTPase domain CAI18_07785 PF12327 FtsZ family, C-terminal domain CAI18_07790 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CAI18_07805 PF07516 SecA Wing and Scaffold domain CAI18_07805 PF07517 SecA DEAD-like domain CAI18_07805 PF02810 SEC-C motif CAI18_07805 PF01043 SecA preprotein cross-linking domain CAI18_07810 PF00293 NUDIX domain CAI18_07820 PF02219 Methylenetetrahydrofolate reductase CAI18_07835 PF00698 Acyl transferase domain CAI18_07835 PF16197 Ketoacyl-synthetase C-terminal extension CAI18_07835 PF00550 Phosphopantetheine attachment site CAI18_07835 PF14765 Polyketide synthase dehydratase CAI18_07835 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI18_07835 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI18_07835 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_07835 PF00107 Zinc-binding dehydrogenase CAI18_07835 PF08659 KR domain CAI18_07840 PF00082 Subtilase family CAI18_07840 PF09286 Pro-kumamolisin, activation domain CAI18_07860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CAI18_07865 PF00128 Alpha amylase, catalytic domain CAI18_07890 PF00685 Sulfotransferase domain CAI18_07900 PF13649 Methyltransferase domain CAI18_07905 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CAI18_07905 PF05221 S-adenosyl-L-homocysteine hydrolase CAI18_07915 PF00311 Phosphoenolpyruvate carboxylase CAI18_07960 PF00328 Histidine phosphatase superfamily (branch 2) CAI18_07965 PF02773 S-adenosylmethionine synthetase, C-terminal domain CAI18_07965 PF02772 S-adenosylmethionine synthetase, central domain CAI18_07965 PF00438 S-adenosylmethionine synthetase, N-terminal domain CAI18_07975 PF13649 Methyltransferase domain CAI18_07980 PF01207 Dihydrouridine synthase (Dus) CAI18_07990 PF00294 pfkB family carbohydrate kinase CAI18_07995 PF07662 Na+ dependent nucleoside transporter C-terminus CAI18_07995 PF01773 Na+ dependent nucleoside transporter N-terminus CAI18_07995 PF07670 Nucleoside recognition CAI18_08005 PF00248 Aldo/keto reductase family CAI18_08015 PF00593 TonB dependent receptor CAI18_08015 PF07715 TonB-dependent Receptor Plug Domain CAI18_08035 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_08040 PF00005 ABC transporter CAI18_08050 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CAI18_08060 PF00005 ABC transporter CAI18_08065 PF13472 GDSL-like Lipase/Acylhydrolase family CAI18_08070 PF00072 Response regulator receiver domain CAI18_08070 PF00486 Transcriptional regulatory protein, C terminal CAI18_08075 PF00512 His Kinase A (phospho-acceptor) domain CAI18_08075 PF08521 Two-component sensor kinase N-terminal CAI18_08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_08095 PF01219 Prokaryotic diacylglycerol kinase CAI18_08110 PF13091 PLD-like domain CAI18_08115 PF01339 CheB methylesterase CAI18_08115 PF00072 Response regulator receiver domain CAI18_08120 PF03705 CheR methyltransferase, all-alpha domain CAI18_08120 PF01739 CheR methyltransferase, SAM binding domain CAI18_08125 PF13426 PAS domain CAI18_08125 PF00563 EAL domain CAI18_08125 PF00990 Diguanylate cyclase, GGDEF domain CAI18_08130 PF01584 CheW-like domain CAI18_08135 PF02203 Tar ligand binding domain homologue CAI18_08135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_08135 PF00672 HAMP domain CAI18_08140 PF01627 Hpt domain CAI18_08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_08140 PF02895 Signal transducing histidine kinase, homodimeric domain CAI18_08140 PF09078 CheY binding CAI18_08140 PF01584 CheW-like domain CAI18_08155 PF03461 TRCF domain CAI18_08155 PF00271 Helicase conserved C-terminal domain CAI18_08155 PF02559 CarD-like/TRCF domain CAI18_08155 PF00270 DEAD/DEAH box helicase CAI18_08155 PF17757 UvrB interaction domain CAI18_08165 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CAI18_08175 PF00512 His Kinase A (phospho-acceptor) domain CAI18_08175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_08175 PF00672 HAMP domain CAI18_08180 PF01790 Prolipoprotein diacylglyceryl transferase CAI18_08190 PF06123 Inner membrane protein CreD CAI18_08215 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI18_08220 PF01475 Ferric uptake regulator family CAI18_08230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_08230 PF00529 HlyD membrane-fusion protein of T1SS CAI18_08235 PF00873 AcrB/AcrD/AcrF family CAI18_08240 PF02321 Outer membrane efflux protein CAI18_08265 PF03466 LysR substrate binding domain CAI18_08265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_08270 PF07690 Major Facilitator Superfamily CAI18_08295 PF01483 Proprotein convertase P-domain CAI18_08295 PF00082 Subtilase family CAI18_08305 PF01483 Proprotein convertase P-domain CAI18_08305 PF00082 Subtilase family CAI18_08315 PF07715 TonB-dependent Receptor Plug Domain CAI18_08315 PF00593 TonB dependent receptor CAI18_08340 PF00654 Voltage gated chloride channel CAI18_08350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CAI18_08350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CAI18_08355 PF06029 AlkA N-terminal domain CAI18_08355 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI18_08400 PF00271 Helicase conserved C-terminal domain CAI18_08400 PF00270 DEAD/DEAH box helicase CAI18_08400 PF03880 DbpA RNA binding domain CAI18_08405 PF00563 EAL domain CAI18_08405 PF00990 Diguanylate cyclase, GGDEF domain CAI18_08405 PF08448 PAS fold CAI18_08410 PF01479 S4 domain CAI18_08410 PF00849 RNA pseudouridylate synthase CAI18_08415 PF00072 Response regulator receiver domain CAI18_08415 PF00990 Diguanylate cyclase, GGDEF domain CAI18_08435 PF03737 Aldolase/RraA CAI18_08440 PF00144 Beta-lactamase CAI18_08445 PF00999 Sodium/hydrogen exchanger family CAI18_08450 PF00512 His Kinase A (phospho-acceptor) domain CAI18_08450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_08450 PF00672 HAMP domain CAI18_08455 PF00486 Transcriptional regulatory protein, C terminal CAI18_08455 PF00072 Response regulator receiver domain CAI18_08460 PF02321 Outer membrane efflux protein CAI18_08475 PF00873 AcrB/AcrD/AcrF family CAI18_08490 PF00664 ABC transporter transmembrane region CAI18_08490 PF00005 ABC transporter CAI18_08530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CAI18_08535 PF04070 Domain of unknown function (DUF378) CAI18_08575 PF00085 Thioredoxin CAI18_08585 PF13603 Leucyl-tRNA synthetase, Domain 2 CAI18_08585 PF08264 Anticodon-binding domain of tRNA CAI18_08585 PF00133 tRNA synthetases class I (I, L, M and V) CAI18_08600 PF01467 Cytidylyltransferase-like CAI18_08615 PF02590 Predicted SPOUT methyltransferase CAI18_08635 PF04402 Protein of unknown function (DUF541) CAI18_08640 PF02545 Maf-like protein CAI18_08645 PF00575 S1 RNA binding domain CAI18_08645 PF10150 Ribonuclease E/G family CAI18_08650 PF13116 Protein of unknown function CAI18_08650 PF13502 AsmA-like C-terminal region CAI18_08660 PF01523 Putative modulator of DNA gyrase CAI18_08665 PF04751 Protein of unknown function (DUF615) CAI18_08670 PF01523 Putative modulator of DNA gyrase CAI18_08685 PF02810 SEC-C motif CAI18_08685 PF03695 Uncharacterised protein family (UPF0149) CAI18_08705 PF00239 Resolvase, N terminal domain CAI18_08705 PF02796 Helix-turn-helix domain of resolvase CAI18_08715 PF00348 Polyprenyl synthetase CAI18_08720 PF02609 Exonuclease VII small subunit CAI18_08725 PF11734 TilS substrate C-terminal domain CAI18_08725 PF01171 PP-loop family CAI18_08725 PF09179 TilS substrate binding domain CAI18_08735 PF00245 Alkaline phosphatase CAI18_08740 PF00375 Sodium:dicarboxylate symporter family CAI18_08755 PF00877 NlpC/P60 family CAI18_08760 PF00877 NlpC/P60 family CAI18_08765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI18_08770 PF04235 Protein of unknown function (DUF418) CAI18_08775 PF01266 FAD dependent oxidoreductase CAI18_08780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI18_08780 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_08790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CAI18_08805 PF01431 Peptidase family M13 CAI18_08805 PF05649 Peptidase family M13 CAI18_08815 PF01431 Peptidase family M13 CAI18_08815 PF05649 Peptidase family M13 CAI18_08835 PF01526 Tn3 transposase DDE domain CAI18_08835 PF13700 Domain of unknown function (DUF4158) CAI18_08875 PF05593 RHS Repeat CAI18_08875 PF03527 RHS protein CAI18_08900 PF13683 Integrase core domain CAI18_08900 PF13276 HTH-like domain CAI18_08920 PF00703 Glycosyl hydrolases family 2 CAI18_08920 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CAI18_08920 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CAI18_08920 PF16355 Domain of unknown function (DUF4982) CAI18_08920 PF02837 Glycosyl hydrolases family 2, sugar binding domain CAI18_08925 PF07745 Glycosyl hydrolase family 53 CAI18_08935 PF09856 Predicted transcriptional regulator (DUF2083) CAI18_08935 PF06114 IrrE N-terminal-like domain CAI18_08935 PF01381 Helix-turn-helix CAI18_08940 PF00171 Aldehyde dehydrogenase family CAI18_08945 PF02770 Acyl-CoA dehydrogenase, middle domain CAI18_08945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_08945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_08950 PF00378 Enoyl-CoA hydratase/isomerase CAI18_08955 PF00378 Enoyl-CoA hydratase/isomerase CAI18_08955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CAI18_08955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CAI18_08965 PF01545 Cation efflux family CAI18_08970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CAI18_08970 PF00378 Enoyl-CoA hydratase/isomerase CAI18_08970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CAI18_08975 PF08281 Sigma-70, region 4 CAI18_08975 PF04542 Sigma-70 region 2 CAI18_08985 PF13180 PDZ domain CAI18_08990 PF00009 Elongation factor Tu GTP binding domain CAI18_08990 PF00679 Elongation factor G C-terminus CAI18_08990 PF06421 GTP-binding protein LepA C-terminus CAI18_08990 PF03144 Elongation factor Tu domain 2 CAI18_08995 PF10502 Signal peptidase, peptidase S26 CAI18_09005 PF00035 Double-stranded RNA binding motif CAI18_09005 PF14622 Ribonuclease-III-like CAI18_09010 PF01926 50S ribosome-binding GTPase CAI18_09010 PF07650 KH domain CAI18_09025 PF05958 tRNA (Uracil-5-)-methyltransferase CAI18_09035 PF01928 CYTH domain CAI18_09040 PF01323 DSBA-like thioredoxin domain CAI18_09045 PF01593 Flavin containing amine oxidoreductase CAI18_09050 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CAI18_09055 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI18_09065 PF01048 Phosphorylase superfamily CAI18_09075 PF00313 'Cold-shock' DNA-binding domain CAI18_09090 PF08494 DEAD/H associated CAI18_09090 PF00271 Helicase conserved C-terminal domain CAI18_09090 PF00270 DEAD/DEAH box helicase CAI18_09095 PF01068 ATP dependent DNA ligase domain CAI18_09095 PF04679 ATP dependent DNA ligase C terminal region CAI18_09095 PF04675 DNA ligase N terminus CAI18_09105 PF04679 ATP dependent DNA ligase C terminal region CAI18_09105 PF04675 DNA ligase N terminus CAI18_09105 PF01068 ATP dependent DNA ligase domain CAI18_09135 PF02803 Thiolase, C-terminal domain CAI18_09135 PF00108 Thiolase, N-terminal domain CAI18_09145 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CAI18_09145 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CAI18_09160 PF01863 Protein of unknown function DUF45 CAI18_09165 PF07043 Protein of unknown function (DUF1328) CAI18_09175 PF01258 Prokaryotic dksA/traR C4-type zinc finger CAI18_09195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI18_09205 PF03831 PhnA domain CAI18_09205 PF08274 PhnA Zinc-Ribbon CAI18_09220 PF07690 Major Facilitator Superfamily CAI18_09250 PF03706 Lysylphosphatidylglycerol synthase TM region CAI18_09250 PF09924 Uncharacterised conserved protein (DUF2156) CAI18_09260 PF01042 Endoribonuclease L-PSP CAI18_09305 PF04545 Sigma-70, region 4 CAI18_09305 PF04542 Sigma-70 region 2 CAI18_09325 PF04060 Putative Fe-S cluster CAI18_09335 PF09334 tRNA synthetases class I (M) CAI18_09335 PF01588 Putative tRNA binding domain CAI18_09350 PF13732 Domain of unknown function (DUF4162) CAI18_09350 PF00005 ABC transporter CAI18_09355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CAI18_09360 PF00324 Amino acid permease CAI18_09365 PF02574 Homocysteine S-methyltransferase CAI18_09375 PF02592 Putative vitamin uptake transporter CAI18_09395 PF03551 Transcriptional regulator PadR-like family CAI18_09430 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CAI18_09435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CAI18_09435 PF07733 Bacterial DNA polymerase III alpha NTPase domain CAI18_09435 PF02811 PHP domain CAI18_09435 PF01336 OB-fold nucleic acid binding domain CAI18_09435 PF14579 Helix-hairpin-helix motif CAI18_09440 PF01351 Ribonuclease HII CAI18_09445 PF02684 Lipid-A-disaccharide synthetase CAI18_09450 PF00132 Bacterial transferase hexapeptide (six repeats) CAI18_09450 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CAI18_09455 PF07977 FabA-like domain CAI18_09460 PF00132 Bacterial transferase hexapeptide (six repeats) CAI18_09460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CAI18_09470 PF07244 Surface antigen variable number repeat CAI18_09470 PF01103 Surface antigen CAI18_09475 PF02163 Peptidase family M50 CAI18_09475 PF17820 PDZ domain CAI18_09480 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CAI18_09480 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CAI18_09480 PF13288 DXP reductoisomerase C-terminal domain CAI18_09490 PF01255 Putative undecaprenyl diphosphate synthase CAI18_09495 PF01765 Ribosome recycling factor CAI18_09500 PF00696 Amino acid kinase family CAI18_09505 PF00072 Response regulator receiver domain CAI18_09505 PF00990 Diguanylate cyclase, GGDEF domain CAI18_09510 PF00889 Elongation factor TS CAI18_09515 PF00318 Ribosomal protein S2 CAI18_09550 PF00557 Metallopeptidase family M24 CAI18_09560 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CAI18_09560 PF00132 Bacterial transferase hexapeptide (six repeats) CAI18_09560 PF14602 Hexapeptide repeat of succinyl-transferase CAI18_09565 PF03960 ArsC family CAI18_09570 PF01546 Peptidase family M20/M25/M40 CAI18_09570 PF07687 Peptidase dimerisation domain CAI18_09575 PF00733 Asparagine synthase CAI18_09575 PF13537 Glutamine amidotransferase domain CAI18_09585 PF07715 TonB-dependent Receptor Plug Domain CAI18_09585 PF00593 TonB dependent receptor CAI18_09590 PF01804 Penicillin amidase CAI18_09595 PF00210 Ferritin-like domain CAI18_09610 PF03989 DNA gyrase C-terminal domain, beta-propeller CAI18_09610 PF00521 DNA gyrase/topoisomerase IV, subunit A CAI18_09625 PF02321 Outer membrane efflux protein CAI18_09630 PF00529 HlyD membrane-fusion protein of T1SS CAI18_09630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_09635 PF07690 Major Facilitator Superfamily CAI18_09645 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI18_09645 PF14310 Fibronectin type III-like domain CAI18_09645 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI18_09660 PF00854 POT family CAI18_09685 PF12802 MarR family CAI18_09690 PF01432 Peptidase family M3 CAI18_09700 PF00255 Glutathione peroxidase CAI18_09705 PF00175 Oxidoreductase NAD-binding domain CAI18_09705 PF00970 Oxidoreductase FAD-binding domain CAI18_09710 PF00005 ABC transporter CAI18_09715 PF05683 Fumarase C-terminus CAI18_09715 PF05681 Fumarate hydratase (Fumerase) CAI18_09730 PF00484 Carbonic anhydrase CAI18_09735 PF02253 Phospholipase A1 CAI18_09745 PF00313 'Cold-shock' DNA-binding domain CAI18_09760 PF00899 ThiF family CAI18_09765 PF01026 TatD related DNase CAI18_09780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_09780 PF02770 Acyl-CoA dehydrogenase, middle domain CAI18_09780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_09790 PF00043 Glutathione S-transferase, C-terminal domain CAI18_09790 PF02798 Glutathione S-transferase, N-terminal domain CAI18_09800 PF00733 Asparagine synthase CAI18_09800 PF13537 Glutamine amidotransferase domain CAI18_09805 PF03358 NADPH-dependent FMN reductase CAI18_09810 PF00772 DnaB-like helicase N terminal domain CAI18_09810 PF03796 DnaB-like helicase C terminal domain CAI18_09815 PF03441 FAD binding domain of DNA photolyase CAI18_09815 PF00875 DNA photolyase CAI18_09825 PF05736 OprF membrane domain CAI18_09825 PF00691 OmpA family CAI18_09835 PF03466 LysR substrate binding domain CAI18_09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_09850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_09855 PF00873 AcrB/AcrD/AcrF family CAI18_09860 PF00106 short chain dehydrogenase CAI18_09865 PF02321 Outer membrane efflux protein CAI18_09875 PF08448 PAS fold CAI18_09875 PF00990 Diguanylate cyclase, GGDEF domain CAI18_09885 PF00990 Diguanylate cyclase, GGDEF domain CAI18_09910 PF00082 Subtilase family CAI18_09915 PF01668 SmpB protein CAI18_09920 PF03364 Polyketide cyclase / dehydrase and lipid transport CAI18_09925 PF03658 RnfH family Ubiquitin CAI18_09930 PF04355 SmpA / OmlA family CAI18_09935 PF01475 Ferric uptake regulator family CAI18_09940 PF02463 RecF/RecN/SMC N terminal domain CAI18_09945 PF01628 HrcA protein C terminal domain CAI18_09945 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CAI18_09950 PF01025 GrpE CAI18_09955 PF00012 Hsp70 protein CAI18_09960 PF00684 DnaJ central domain CAI18_09960 PF01556 DnaJ C terminal domain CAI18_09960 PF00226 DnaJ domain CAI18_09970 PF08543 Phosphomethylpyrimidine kinase CAI18_09995 PF00664 ABC transporter transmembrane region CAI18_09995 PF03412 Peptidase C39 family CAI18_09995 PF00005 ABC transporter CAI18_10000 PF03466 LysR substrate binding domain CAI18_10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_10005 PF00005 ABC transporter CAI18_10005 PF00664 ABC transporter transmembrane region CAI18_10010 PF01205 Uncharacterized protein family UPF0029 CAI18_10015 PF03641 Possible lysine decarboxylase CAI18_10020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_10020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI18_10025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI18_10025 PF02817 e3 binding domain CAI18_10025 PF00364 Biotin-requiring enzyme CAI18_10030 PF02779 Transketolase, pyrimidine binding domain CAI18_10030 PF16870 2-oxoglutarate dehydrogenase C-terminal CAI18_10030 PF00676 Dehydrogenase E1 component CAI18_10030 PF16078 2-oxoglutarate dehydrogenase N-terminus CAI18_10040 PF08007 Cupin superfamily protein CAI18_10050 PF08328 Adenylosuccinate lyase C-terminal CAI18_10050 PF00206 Lyase CAI18_10060 PF03471 Transporter associated domain CAI18_10060 PF01595 Cyclin M transmembrane N-terminal domain CAI18_10060 PF00571 CBS domain CAI18_10065 PF10415 Fumarase C C-terminus CAI18_10065 PF00206 Lyase CAI18_10090 PF00005 ABC transporter CAI18_10095 PF00392 Bacterial regulatory proteins, gntR family CAI18_10105 PF00255 Glutathione peroxidase CAI18_10110 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CAI18_10110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI18_10115 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI18_10115 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI18_10115 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI18_10120 PF04102 SlyX CAI18_10135 PF00356 Bacterial regulatory proteins, lacI family CAI18_10140 PF07690 Major Facilitator Superfamily CAI18_10145 PF00294 pfkB family carbohydrate kinase CAI18_10170 PF02574 Homocysteine S-methyltransferase CAI18_10170 PF00809 Pterin binding enzyme CAI18_10175 PF01209 ubiE/COQ5 methyltransferase family CAI18_10180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_10180 PF02770 Acyl-CoA dehydrogenase, middle domain CAI18_10180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_10185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_10185 PF02770 Acyl-CoA dehydrogenase, middle domain CAI18_10185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_10205 PF00773 RNB domain CAI18_10205 PF00575 S1 RNA binding domain CAI18_10205 PF08461 Ribonuclease R winged-helix domain CAI18_10205 PF17876 Cold shock domain CAI18_10205 PF08206 Ribonuclease B OB domain CAI18_10215 PF00588 SpoU rRNA Methylase family CAI18_10215 PF08032 RNA 2'-O ribose methyltransferase substrate binding CAI18_10220 PF00990 Diguanylate cyclase, GGDEF domain CAI18_10220 PF07694 5TMR of 5TMR-LYT CAI18_10225 PF00929 Exonuclease CAI18_10235 PF01895 PhoU domain CAI18_10240 PF00005 ABC transporter CAI18_10245 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_10250 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_10255 PF12849 PBP superfamily domain CAI18_10260 PF12849 PBP superfamily domain CAI18_10280 PF00916 Sulfate permease family CAI18_10280 PF01740 STAS domain CAI18_10285 PF10576 Iron-sulfur binding domain of endonuclease III CAI18_10285 PF00633 Helix-hairpin-helix motif CAI18_10285 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI18_10295 PF00378 Enoyl-CoA hydratase/isomerase CAI18_10300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI18_10300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CAI18_10305 PF00293 NUDIX domain CAI18_10310 PF00581 Rhodanese-like domain CAI18_10350 PF10672 S-adenosylmethionine-dependent methyltransferase CAI18_10350 PF02926 THUMP domain CAI18_10350 PF01170 Putative RNA methylase family UPF0020 CAI18_10355 PF01513 ATP-NAD kinase CAI18_10380 PF08411 Exonuclease C-terminal CAI18_10380 PF00929 Exonuclease CAI18_10390 PF01494 FAD binding domain CAI18_10395 PF00266 Aminotransferase class-V CAI18_10405 PF06052 3-hydroxyanthranilic acid dioxygenase CAI18_10410 PF00484 Carbonic anhydrase CAI18_10455 PF00072 Response regulator receiver domain CAI18_10455 PF00196 Bacterial regulatory proteins, luxR family CAI18_10475 PF04299 Putative FMN-binding domain CAI18_10495 PF01336 OB-fold nucleic acid binding domain CAI18_10495 PF00152 tRNA synthetases class II (D, K and N) CAI18_10505 PF01521 Iron-sulphur cluster biosynthesis CAI18_10510 PF01250 Ribosomal protein S6 CAI18_10515 PF01084 Ribosomal protein S18 CAI18_10520 PF03948 Ribosomal protein L9, C-terminal domain CAI18_10520 PF01281 Ribosomal protein L9, N-terminal domain CAI18_10525 PF02463 RecF/RecN/SMC N terminal domain CAI18_10530 PF04354 ZipA, C-terminal FtsZ-binding domain CAI18_10540 PF00155 Aminotransferase class I and II CAI18_10545 PF00533 BRCA1 C Terminus (BRCT) domain CAI18_10545 PF03120 NAD-dependent DNA ligase OB-fold domain CAI18_10545 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CAI18_10545 PF12826 Helix-hairpin-helix motif CAI18_10545 PF01653 NAD-dependent DNA ligase adenylation domain CAI18_10550 PF00152 tRNA synthetases class II (D, K and N) CAI18_10565 PF01008 Initiation factor 2 subunit family CAI18_10570 PF03989 DNA gyrase C-terminal domain, beta-propeller CAI18_10570 PF00521 DNA gyrase/topoisomerase IV, subunit A CAI18_10575 PF13360 PQQ-like domain CAI18_10590 PF17392 Urocanase C-terminal domain CAI18_10590 PF01175 Urocanase Rossmann-like domain CAI18_10590 PF17391 Urocanase N-terminal domain CAI18_10600 PF00221 Aromatic amino acid lyase CAI18_10605 PF07969 Amidohydrolase family CAI18_10620 PF07702 UTRA domain CAI18_10620 PF00392 Bacterial regulatory proteins, gntR family CAI18_10645 PF01794 Ferric reductase like transmembrane component CAI18_10650 PF00174 Oxidoreductase molybdopterin binding domain CAI18_10655 PF00266 Aminotransferase class-V CAI18_10660 PF01817 Chorismate mutase type II CAI18_10660 PF01842 ACT domain CAI18_10660 PF00800 Prephenate dehydratase CAI18_10665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CAI18_10675 PF03544 Gram-negative bacterial TonB protein C-terminal CAI18_10680 PF02403 Seryl-tRNA synthetase N-terminal domain CAI18_10680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI18_10685 PF02525 Flavodoxin-like fold CAI18_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_10690 PF03466 LysR substrate binding domain CAI18_10715 PF00672 HAMP domain CAI18_10715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_10715 PF02203 Tar ligand binding domain homologue CAI18_10720 PF01494 FAD binding domain CAI18_10735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_10735 PF08448 PAS fold CAI18_10735 PF13188 PAS domain CAI18_10735 PF00072 Response regulator receiver domain CAI18_10735 PF00512 His Kinase A (phospho-acceptor) domain CAI18_10740 PF00512 His Kinase A (phospho-acceptor) domain CAI18_10740 PF01627 Hpt domain CAI18_10740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI18_10740 PF00072 Response regulator receiver domain CAI18_10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_10740 PF00672 HAMP domain CAI18_10750 PF06745 KaiC CAI18_10755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_10755 PF13426 PAS domain CAI18_10755 PF00072 Response regulator receiver domain CAI18_10765 PF03918 Cytochrome C biogenesis protein CAI18_10770 PF08534 Redoxin CAI18_10775 PF01578 Cytochrome C assembly protein CAI18_10775 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CAI18_10780 PF03100 CcmE CAI18_10790 PF01578 Cytochrome C assembly protein CAI18_10795 PF00082 Subtilase family CAI18_10805 PF04542 Sigma-70 region 2 CAI18_10805 PF08281 Sigma-70, region 4 CAI18_10820 PF00034 Cytochrome c CAI18_10835 PF05523 WxcM-like, C-terminal CAI18_10855 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CAI18_10860 PF01943 Polysaccharide biosynthesis protein CAI18_10865 PF00535 Glycosyl transferase family 2 CAI18_10880 PF08241 Methyltransferase domain CAI18_10920 PF00005 ABC transporter CAI18_10925 PF00664 ABC transporter transmembrane region CAI18_10925 PF00005 ABC transporter CAI18_10930 PF07690 Major Facilitator Superfamily CAI18_10935 PF00296 Luciferase-like monooxygenase CAI18_10950 PF01595 Cyclin M transmembrane N-terminal domain CAI18_10950 PF03471 Transporter associated domain CAI18_10950 PF00571 CBS domain CAI18_10965 PF01384 Phosphate transporter family CAI18_10980 PF00204 DNA gyrase B CAI18_10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_10980 PF01751 Toprim domain CAI18_10980 PF00986 DNA gyrase B subunit, carboxyl terminus CAI18_10990 PF06418 CTP synthase N-terminus CAI18_10990 PF00117 Glutamine amidotransferase class-I CAI18_10995 PF00793 DAHP synthetase I family CAI18_11005 PF03952 Enolase, N-terminal domain CAI18_11005 PF00113 Enolase, C-terminal TIM barrel domain CAI18_11010 PF04977 Septum formation initiator CAI18_11015 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CAI18_11020 PF02542 YgbB family CAI18_11025 PF01142 tRNA pseudouridine synthase D (TruD) CAI18_11030 PF01713 Smr domain CAI18_11035 PF01975 Survival protein SurE CAI18_11045 PF09335 SNARE associated Golgi protein CAI18_11050 PF01551 Peptidase family M23 CAI18_11050 PF01476 LysM domain CAI18_11055 PF04430 Protein of unknown function (DUF498/DUF598) CAI18_11060 PF01985 CRS1 / YhbY (CRM) domain CAI18_11065 PF01728 FtsJ-like methyltransferase CAI18_11070 PF00004 ATPase family associated with various cellular activities (AAA) CAI18_11070 PF17862 AAA+ lid domain CAI18_11070 PF06480 FtsH Extracellular CAI18_11070 PF01434 Peptidase family M41 CAI18_11075 PF00809 Pterin binding enzyme CAI18_11085 PF17209 Hfq protein CAI18_11090 PF16360 GTP-binding GTPase Middle Region CAI18_11090 PF13167 GTP-binding GTPase N-terminal CAI18_11090 PF01926 50S ribosome-binding GTPase CAI18_11095 PF02464 Competence-damaged protein CAI18_11100 PF03109 ABC1 family CAI18_11105 PF00717 Peptidase S24-like CAI18_11105 PF01726 LexA DNA binding domain CAI18_11110 PF00154 recA bacterial DNA recombination protein CAI18_11120 PF02631 RecX family CAI18_11125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CAI18_11125 PF02272 DHHA1 domain CAI18_11125 PF01411 tRNA synthetases class II (A) CAI18_11130 PF02599 Global regulator protein family CAI18_11145 PF13426 PAS domain CAI18_11145 PF08447 PAS fold CAI18_11145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_11150 PF02678 Pirin CAI18_11150 PF17954 Quercetinase C-terminal cupin domain CAI18_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_11155 PF03466 LysR substrate binding domain CAI18_11180 PF08543 Phosphomethylpyrimidine kinase CAI18_11195 PF02562 PhoH-like protein CAI18_11195 PF13638 PIN domain CAI18_11200 PF00578 AhpC/TSA family CAI18_11215 PF00701 Dihydrodipicolinate synthetase family CAI18_11225 PF11953 Domain of unknown function (DUF3470) CAI18_11225 PF00037 4Fe-4S binding domain CAI18_11230 PF05035 2-keto-3-deoxy-galactonokinase CAI18_11235 PF08450 SMP-30/Gluconolactonase/LRE-like region CAI18_11240 PF13378 Enolase C-terminal domain-like CAI18_11240 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI18_11245 PF01081 KDPG and KHG aldolase CAI18_11255 PF03466 LysR substrate binding domain CAI18_11255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_11270 PF00942 Cellulose binding domain CAI18_11270 PF03442 Carbohydrate binding domain X2 CAI18_11285 PF01055 Glycosyl hydrolases family 31 CAI18_11285 PF16338 Domain of unknown function (DUF4968) CAI18_11285 PF17137 Domain of unknown function (DUF5110) CAI18_11295 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CAI18_11295 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CAI18_11305 PF00083 Sugar (and other) transporter CAI18_11325 PF01520 N-acetylmuramoyl-L-alanine amidase CAI18_11330 PF02649 Type I GTP cyclohydrolase folE2 CAI18_11340 PF01743 Poly A polymerase head domain CAI18_11340 PF12626 Polymerase A arginine-rich C-terminus CAI18_11340 PF12627 Probable RNA and SrmB- binding site of polymerase A CAI18_11345 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CAI18_11350 PF02548 Ketopantoate hydroxymethyltransferase CAI18_11355 PF02569 Pantoate-beta-alanine ligase CAI18_11360 PF02261 Aspartate decarboxylase CAI18_11365 PF00342 Phosphoglucose isomerase CAI18_11390 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI18_11390 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI18_11390 PF14310 Fibronectin type III-like domain CAI18_11405 PF00563 EAL domain CAI18_11405 PF01590 GAF domain CAI18_11405 PF00360 Phytochrome region CAI18_11405 PF00990 Diguanylate cyclase, GGDEF domain CAI18_11415 PF02013 Cellulose or protein binding domain CAI18_11415 PF00150 Cellulase (glycosyl hydrolase family 5) CAI18_11420 PF00072 Response regulator receiver domain CAI18_11435 PF04551 GcpE protein CAI18_11440 PF01569 PAP2 superfamily CAI18_11455 PF07690 Major Facilitator Superfamily CAI18_11470 PF01565 FAD binding domain CAI18_11470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CAI18_11475 PF01180 Dihydroorotate dehydrogenase CAI18_11495 PF00171 Aldehyde dehydrogenase family CAI18_11525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_11525 PF00183 Hsp90 protein CAI18_11535 PF01467 Cytidylyltransferase-like CAI18_11550 PF00037 4Fe-4S binding domain CAI18_11560 PF02927 Cellulase N-terminal ig-like domain CAI18_11560 PF00759 Glycosyl hydrolase family 9 CAI18_11605 PF02547 Queuosine biosynthesis protein CAI18_11610 PF01702 Queuine tRNA-ribosyltransferase CAI18_11615 PF02699 Preprotein translocase subunit CAI18_11620 PF02355 Protein export membrane protein CAI18_11620 PF13721 SecD export protein N-terminal TM region CAI18_11620 PF07549 SecD/SecF GG Motif CAI18_11625 PF02355 Protein export membrane protein CAI18_11625 PF07549 SecD/SecF GG Motif CAI18_11665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CAI18_11670 PF00294 pfkB family carbohydrate kinase CAI18_11675 PF00381 PTS HPr component phosphorylation site CAI18_11675 PF02896 PEP-utilising enzyme, TIM barrel domain CAI18_11675 PF00391 PEP-utilising enzyme, mobile domain CAI18_11675 PF05524 PEP-utilising enzyme, N-terminal CAI18_11675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CAI18_11680 PF00356 Bacterial regulatory proteins, lacI family CAI18_11690 PF00873 AcrB/AcrD/AcrF family CAI18_11695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_11695 PF00529 HlyD membrane-fusion protein of T1SS CAI18_11705 PF05088 Bacterial NAD-glutamate dehydrogenase CAI18_11740 PF09335 SNARE associated Golgi protein CAI18_11745 PF01494 FAD binding domain CAI18_11755 PF00881 Nitroreductase family CAI18_11760 PF00106 short chain dehydrogenase CAI18_11795 PF08241 Methyltransferase domain CAI18_11795 PF12697 Alpha/beta hydrolase family CAI18_11870 PF01526 Tn3 transposase DDE domain CAI18_11870 PF13700 Domain of unknown function (DUF4158) CAI18_11885 PF01106 NifU-like domain CAI18_11890 PF01329 Pterin 4 alpha carbinolamine dehydratase CAI18_11900 PF02535 ZIP Zinc transporter CAI18_11905 PF11737 Protein of unknown function (DUF3300) CAI18_11910 PF01479 S4 domain CAI18_11910 PF00849 RNA pseudouridylate synthase CAI18_11915 PF00575 S1 RNA binding domain CAI18_11915 PF10150 Ribonuclease E/G family CAI18_11915 PF12111 Polyribonucleotide phosphorylase C terminal CAI18_11920 PF00072 Response regulator receiver domain CAI18_11920 PF00196 Bacterial regulatory proteins, luxR family CAI18_11935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CAI18_11945 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI18_11945 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI18_11945 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI18_11955 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CAI18_11955 PF01648 4'-phosphopantetheinyl transferase superfamily CAI18_11970 PF13193 AMP-binding enzyme C-terminal domain CAI18_11970 PF00975 Thioesterase domain CAI18_11970 PF00668 Condensation domain CAI18_11970 PF00501 AMP-binding enzyme CAI18_11970 PF00550 Phosphopantetheine attachment site CAI18_12050 PF01066 CDP-alcohol phosphatidyltransferase CAI18_12055 PF08459 UvrC Helix-hairpin-helix N-terminal CAI18_12055 PF02151 UvrB/uvrC motif CAI18_12055 PF01541 GIY-YIG catalytic domain CAI18_12065 PF01451 Low molecular weight phosphotyrosine protein phosphatase CAI18_12070 PF02348 Cytidylyltransferase CAI18_12075 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CAI18_12080 PF00664 ABC transporter transmembrane region CAI18_12080 PF00005 ABC transporter CAI18_12090 PF01618 MotA/TolQ/ExbB proton channel family CAI18_12095 PF03772 Competence protein CAI18_12095 PF00753 Metallo-beta-lactamase superfamily CAI18_12105 PF00005 ABC transporter CAI18_12110 PF12704 MacB-like periplasmic core domain CAI18_12110 PF02687 FtsX-like permease family CAI18_12120 PF03937 Flavinator of succinate dehydrogenase CAI18_12125 PF13237 4Fe-4S dicluster domain CAI18_12125 PF13085 2Fe-2S iron-sulfur cluster binding domain CAI18_12135 PF00890 FAD binding domain CAI18_12135 PF02910 Fumarate reductase flavoprotein C-term CAI18_12140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CAI18_12145 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CAI18_12160 PF17912 MalK OB fold domain CAI18_12160 PF00005 ABC transporter CAI18_12165 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CAI18_12165 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CAI18_12170 PF02685 Glucokinase CAI18_12175 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CAI18_12180 PF00920 Dehydratase family CAI18_12185 PF01081 KDPG and KHG aldolase CAI18_12195 PF00873 AcrB/AcrD/AcrF family CAI18_12200 PF00873 AcrB/AcrD/AcrF family CAI18_12215 PF00034 Cytochrome c CAI18_12260 PF09308 LuxQ, periplasmic CAI18_12260 PF00072 Response regulator receiver domain CAI18_12260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_12260 PF00512 His Kinase A (phospho-acceptor) domain CAI18_12265 PF00575 S1 RNA binding domain CAI18_12265 PF09371 Tex-like protein N-terminal domain CAI18_12265 PF16921 Tex protein YqgF-like domain CAI18_12265 PF17674 HHH domain CAI18_12275 PF01266 FAD dependent oxidoreductase CAI18_12275 PF00355 Rieske [2Fe-2S] domain CAI18_12290 PF00561 alpha/beta hydrolase fold CAI18_12300 PF01066 CDP-alcohol phosphatidyltransferase CAI18_12320 PF03618 Kinase/pyrophosphorylase CAI18_12325 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CAI18_12325 PF00391 PEP-utilising enzyme, mobile domain CAI18_12325 PF02896 PEP-utilising enzyme, TIM barrel domain CAI18_12330 PF05552 Conserved TM helix CAI18_12330 PF00924 Mechanosensitive ion channel CAI18_12350 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CAI18_12465 PF00929 Exonuclease CAI18_12470 PF14437 MafB19-like deaminase CAI18_12475 PF02742 Iron dependent repressor, metal binding and dimerisation domain CAI18_12475 PF01325 Iron dependent repressor, N-terminal DNA binding domain CAI18_12480 PF01566 Natural resistance-associated macrophage protein CAI18_12485 PF00561 alpha/beta hydrolase fold CAI18_12500 PF05977 Transmembrane secretion effector CAI18_12525 PF00857 Isochorismatase family CAI18_12540 PF00196 Bacterial regulatory proteins, luxR family CAI18_12540 PF00072 Response regulator receiver domain CAI18_12560 PF03466 LysR substrate binding domain CAI18_12560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_12565 PF00361 Proton-conducting membrane transporter CAI18_12565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI18_12565 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CAI18_12570 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CAI18_12575 PF02540 NAD synthase CAI18_12575 PF00958 GMP synthase C terminal domain CAI18_12575 PF00117 Glutamine amidotransferase class-I CAI18_12580 PF00571 CBS domain CAI18_12580 PF00478 IMP dehydrogenase / GMP reductase domain CAI18_12585 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CAI18_12585 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CAI18_12595 PF00999 Sodium/hydrogen exchanger family CAI18_12595 PF02254 TrkA-N domain CAI18_12605 PF00483 Nucleotidyl transferase CAI18_12610 PF02719 Polysaccharide biosynthesis protein CAI18_12615 PF00953 Glycosyl transferase family 4 CAI18_12620 PF18073 Rubredoxin metal binding domain CAI18_12630 PF00216 Bacterial DNA-binding protein CAI18_12635 PF00575 S1 RNA binding domain CAI18_12640 PF02224 Cytidylate kinase CAI18_12645 PF00444 Ribosomal protein L36 CAI18_12660 PF04371 Porphyromonas-type peptidyl-arginine deiminase CAI18_12665 PF00795 Carbon-nitrogen hydrolase CAI18_12690 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_12695 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_12715 PF00356 Bacterial regulatory proteins, lacI family CAI18_12725 PF03795 YCII-related domain CAI18_12730 PF02616 Segregation and condensation protein ScpA CAI18_12735 PF04079 Segregation and condensation complex subunit ScpB CAI18_12740 PF00849 RNA pseudouridylate synthase CAI18_12740 PF01479 S4 domain CAI18_12755 PF00795 Carbon-nitrogen hydrolase CAI18_12760 PF00155 Aminotransferase class I and II CAI18_12765 PF00005 ABC transporter CAI18_12770 PF03379 CcmB protein CAI18_12775 PF01578 Cytochrome C assembly protein CAI18_12785 PF03100 CcmE CAI18_12790 PF01578 Cytochrome C assembly protein CAI18_12790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CAI18_12795 PF08534 Redoxin CAI18_12800 PF03918 Cytochrome C biogenesis protein CAI18_12810 PF00561 alpha/beta hydrolase fold CAI18_12815 PF00313 'Cold-shock' DNA-binding domain CAI18_12820 PF00005 ABC transporter CAI18_12820 PF00664 ABC transporter transmembrane region CAI18_12825 PF00664 ABC transporter transmembrane region CAI18_12825 PF00005 ABC transporter CAI18_12830 PF01654 Cytochrome bd terminal oxidase subunit I CAI18_12835 PF02322 Cytochrome bd terminal oxidase subunit II CAI18_12845 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CAI18_12860 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CAI18_12860 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CAI18_12870 PF00171 Aldehyde dehydrogenase family CAI18_12875 PF01472 PUA domain CAI18_12875 PF00696 Amino acid kinase family CAI18_12885 PF00206 Lyase CAI18_12890 PF01118 Semialdehyde dehydrogenase, NAD binding domain CAI18_12900 PF00696 Amino acid kinase family CAI18_12900 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase CAI18_12905 PF07687 Peptidase dimerisation domain CAI18_12905 PF01546 Peptidase family M20/M25/M40 CAI18_12915 PF00764 Arginosuccinate synthase CAI18_12920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CAI18_12920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CAI18_12930 PF09190 DALR domain CAI18_12930 PF01406 tRNA synthetases class I (C) catalytic domain CAI18_12935 PF02657 Fe-S metabolism associated domain CAI18_12945 PF01258 Prokaryotic dksA/traR C4-type zinc finger CAI18_12950 PF01809 Putative membrane protein insertion efficiency factor CAI18_12955 PF01979 Amidohydrolase family CAI18_12980 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CAI18_12985 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CAI18_12995 PF00753 Metallo-beta-lactamase superfamily CAI18_13040 PF00295 Glycosyl hydrolases family 28 CAI18_13050 PF13419 Haloacid dehalogenase-like hydrolase CAI18_13060 PF01979 Amidohydrolase family CAI18_13070 PF01132 Elongation factor P (EF-P) OB domain CAI18_13070 PF08207 Elongation factor P (EF-P) KOW-like domain CAI18_13070 PF09285 Elongation factor P, C-terminal CAI18_13075 PF04055 Radical SAM superfamily CAI18_13080 PF13188 PAS domain CAI18_13080 PF03707 Bacterial signalling protein N terminal repeat CAI18_13080 PF00990 Diguanylate cyclase, GGDEF domain CAI18_13080 PF00563 EAL domain CAI18_13090 PF00588 SpoU rRNA Methylase family CAI18_13095 PF00459 Inositol monophosphatase family CAI18_13100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CAI18_13100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CAI18_13105 PF00545 ribonuclease CAI18_13125 PF00270 DEAD/DEAH box helicase CAI18_13125 PF00271 Helicase conserved C-terminal domain CAI18_13125 PF03880 DbpA RNA binding domain CAI18_13130 PF00156 Phosphoribosyl transferase domain CAI18_13135 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CAI18_13145 PF14497 Glutathione S-transferase, C-terminal domain CAI18_13145 PF02798 Glutathione S-transferase, N-terminal domain CAI18_13150 PF00313 'Cold-shock' DNA-binding domain CAI18_13155 PF07152 YaeQ protein CAI18_13195 PF00239 Resolvase, N terminal domain CAI18_13195 PF02796 Helix-turn-helix domain of resolvase CAI18_13205 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI18_13215 PF07879 PHB/PHA accumulation regulator DNA-binding domain CAI18_13215 PF05233 PHB accumulation regulatory domain CAI18_13235 PF01119 DNA mismatch repair protein, C-terminal domain CAI18_13235 PF08676 MutL C terminal dimerisation domain CAI18_13240 PF01520 N-acetylmuramoyl-L-alanine amidase CAI18_13240 PF11741 AMIN domain CAI18_13245 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CAI18_13250 PF01256 Carbohydrate kinase CAI18_13250 PF03853 YjeF-related protein N-terminus CAI18_13255 PF08331 Domain of unknown function (DUF1730) CAI18_13260 PF13742 OB-fold nucleic acid binding domain CAI18_13260 PF02601 Exonuclease VII, large subunit CAI18_13275 PF03781 Sulfatase-modifying factor enzyme 1 CAI18_13285 PF00570 HRDC domain CAI18_13285 PF01612 3'-5' exonuclease CAI18_13315 PF01584 CheW-like domain CAI18_13320 PF00672 HAMP domain CAI18_13320 PF02743 Cache domain CAI18_13320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_13325 PF02245 Methylpurine-DNA glycosylase (MPG) CAI18_13330 PF00270 DEAD/DEAH box helicase CAI18_13330 PF08494 DEAD/H associated CAI18_13330 PF00271 Helicase conserved C-terminal domain CAI18_13350 PF04386 Stringent starvation protein B CAI18_13355 PF02798 Glutathione S-transferase, N-terminal domain CAI18_13355 PF00043 Glutathione S-transferase, C-terminal domain CAI18_13360 PF02167 Cytochrome C1 family CAI18_13365 PF00032 Cytochrome b(C-terminal)/b6/petD CAI18_13365 PF00033 Cytochrome b/b6/petB CAI18_13380 PF01464 Transglycosylase SLT domain CAI18_13395 PF04055 Radical SAM superfamily CAI18_13395 PF01938 TRAM domain CAI18_13395 PF00919 Uncharacterized protein family UPF0004 CAI18_13400 PF02562 PhoH-like protein CAI18_13410 PF02130 Uncharacterized protein family UPF0054 CAI18_13420 PF00571 CBS domain CAI18_13420 PF03471 Transporter associated domain CAI18_13435 PF00171 Aldehyde dehydrogenase family CAI18_13440 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_13445 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_13450 PF08402 TOBE domain CAI18_13450 PF00005 ABC transporter CAI18_13455 PF02321 Outer membrane efflux protein CAI18_13460 PF07690 Major Facilitator Superfamily CAI18_13465 PF13533 Biotin-lipoyl like CAI18_13470 PF13416 Bacterial extracellular solute-binding protein CAI18_13475 PF00202 Aminotransferase class-III CAI18_13480 PF00120 Glutamine synthetase, catalytic domain CAI18_13485 PF07722 Peptidase C26 CAI18_13490 PF00120 Glutamine synthetase, catalytic domain CAI18_13495 PF01266 FAD dependent oxidoreductase CAI18_13500 PF00072 Response regulator receiver domain CAI18_13500 PF00990 Diguanylate cyclase, GGDEF domain CAI18_13505 PF01814 Hemerythrin HHE cation binding domain CAI18_13510 PF00083 Sugar (and other) transporter CAI18_13510 PF07690 Major Facilitator Superfamily CAI18_13520 PF00384 Molybdopterin oxidoreductase CAI18_13525 PF02634 FdhD/NarQ family CAI18_13530 PF07690 Major Facilitator Superfamily CAI18_13545 PF00202 Aminotransferase class-III CAI18_13555 PF04286 Protein of unknown function (DUF445) CAI18_13560 PF01627 Hpt domain CAI18_13560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI18_13560 PF00072 Response regulator receiver domain CAI18_13560 PF00512 His Kinase A (phospho-acceptor) domain CAI18_13560 PF00672 HAMP domain CAI18_13560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_13565 PF00072 Response regulator receiver domain CAI18_13570 PF07690 Major Facilitator Superfamily CAI18_13590 PF03797 Autotransporter beta-domain CAI18_13590 PF00082 Subtilase family CAI18_13600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_13600 PF00529 HlyD membrane-fusion protein of T1SS CAI18_13605 PF00873 AcrB/AcrD/AcrF family CAI18_13615 PF00072 Response regulator receiver domain CAI18_13615 PF13426 PAS domain CAI18_13615 PF00512 His Kinase A (phospho-acceptor) domain CAI18_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_13615 PF08448 PAS fold CAI18_13620 PF00072 Response regulator receiver domain CAI18_13620 PF00196 Bacterial regulatory proteins, luxR family CAI18_13650 PF05974 Domain of unknown function (DUF892) CAI18_13690 PF10414 Sirohaem synthase dimerisation region CAI18_13690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CAI18_13690 PF14824 Sirohaem biosynthesis protein central CAI18_13700 PF12804 MobA-like NTP transferase domain CAI18_13715 PF03372 Endonuclease/Exonuclease/phosphatase family CAI18_13725 PF00107 Zinc-binding dehydrogenase CAI18_13725 PF13823 Alcohol dehydrogenase GroES-associated CAI18_13725 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_13755 PF00899 ThiF family CAI18_13765 PF03454 MoeA C-terminal region (domain IV) CAI18_13765 PF03453 MoeA N-terminal region (domain I and II) CAI18_13765 PF00994 Probable molybdopterin binding domain CAI18_13770 PF01926 50S ribosome-binding GTPase CAI18_13770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CAI18_13775 PF01011 PQQ enzyme repeat CAI18_13775 PF13360 PQQ-like domain CAI18_13785 PF13464 Domain of unknown function (DUF4115) CAI18_13795 PF04055 Radical SAM superfamily CAI18_13800 PF00334 Nucleoside diphosphate kinase CAI18_13810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CAI18_13810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CAI18_13810 PF00378 Enoyl-CoA hydratase/isomerase CAI18_13815 PF02803 Thiolase, C-terminal domain CAI18_13815 PF00108 Thiolase, N-terminal domain CAI18_13825 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CAI18_13830 PF12002 MgsA AAA+ ATPase C terminal CAI18_13830 PF16193 AAA C-terminal domain CAI18_13830 PF00004 ATPase family associated with various cellular activities (AAA) CAI18_13840 PF03548 Outer membrane lipoprotein carrier protein LolA CAI18_13850 PF09397 Ftsk gamma domain CAI18_13850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CAI18_13850 PF17854 FtsK alpha domain CAI18_13850 PF01580 FtsK/SpoIIIE family CAI18_13855 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_13870 PF01176 Translation initiation factor 1A / IF-1 CAI18_13875 PF02861 Clp amino terminal domain, pathogenicity island component CAI18_13875 PF17871 AAA lid domain CAI18_13875 PF10431 C-terminal, D2-small domain, of ClpB protein CAI18_13875 PF07724 AAA domain (Cdc48 subfamily) CAI18_13875 PF00004 ATPase family associated with various cellular activities (AAA) CAI18_13880 PF02617 ATP-dependent Clp protease adaptor protein ClpS CAI18_13885 PF00293 NUDIX domain CAI18_13895 PF04356 Protein of unknown function (DUF489) CAI18_13900 PF00672 HAMP domain CAI18_13900 PF12729 Four helix bundle sensory module for signal transduction CAI18_13900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_13915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_13915 PF07730 Histidine kinase CAI18_13920 PF00990 Diguanylate cyclase, GGDEF domain CAI18_13920 PF00563 EAL domain CAI18_13920 PF03707 Bacterial signalling protein N terminal repeat CAI18_13925 PF13426 PAS domain CAI18_13925 PF13188 PAS domain CAI18_13925 PF00989 PAS fold CAI18_13925 PF00512 His Kinase A (phospho-acceptor) domain CAI18_13925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_13945 PF00072 Response regulator receiver domain CAI18_13945 PF01584 CheW-like domain CAI18_13955 PF00460 Flagella basal body rod protein CAI18_13955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_13960 PF03963 Flagellar hook capping protein - N-terminal region CAI18_13965 PF00460 Flagella basal body rod protein CAI18_13965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_13965 PF07559 Flagellar basal body protein FlaE CAI18_13975 PF00460 Flagella basal body rod protein CAI18_13975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_13985 PF00460 Flagella basal body rod protein CAI18_13985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_13990 PF02107 Flagellar L-ring protein CAI18_13995 PF02119 Flagellar P-ring protein CAI18_14005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CAI18_14005 PF07196 Flagellin hook IN motif CAI18_14010 PF00700 Bacterial flagellin C-terminal helical region CAI18_14010 PF00669 Bacterial flagellin N-terminal helical region CAI18_14015 PF00669 Bacterial flagellin N-terminal helical region CAI18_14015 PF00700 Bacterial flagellin C-terminal helical region CAI18_14020 PF02465 Flagellar hook-associated protein 2 N-terminus CAI18_14020 PF07195 Flagellar hook-associated protein 2 C-terminus CAI18_14020 PF07196 Flagellin hook IN motif CAI18_14025 PF02561 Flagellar protein FliS CAI18_14040 PF00196 Bacterial regulatory proteins, luxR family CAI18_14040 PF00072 Response regulator receiver domain CAI18_14045 PF00309 Sigma-54 factor, Activator interacting domain (AID) CAI18_14045 PF04552 Sigma-54, DNA binding domain CAI18_14045 PF04963 Sigma-54 factor, core binding domain CAI18_14050 PF01339 CheB methylesterase CAI18_14050 PF00072 Response regulator receiver domain CAI18_14055 PF00158 Sigma-54 interaction domain CAI18_14055 PF06490 Flagellar regulatory protein FleQ CAI18_14055 PF02954 Bacterial regulatory protein, Fis family CAI18_14140 PF00534 Glycosyl transferases group 1 CAI18_14140 PF00535 Glycosyl transferase family 2 CAI18_14145 PF02049 Flagellar hook-basal body complex protein FliE CAI18_14150 PF08345 Flagellar M-ring protein C-terminal CAI18_14150 PF01514 Secretory protein of YscJ/FliF family CAI18_14155 PF14842 FliG N-terminal domain CAI18_14155 PF01706 FliG C-terminal domain CAI18_14155 PF14841 FliG middle domain CAI18_14165 PF18269 T3SS EscN ATPase C-terminal domain CAI18_14165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI18_14185 PF02154 Flagellar motor switch protein FliM CAI18_14185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CAI18_14190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CAI18_14200 PF00813 FliP family CAI18_14205 PF01313 Bacterial export proteins, family 3 CAI18_14210 PF01311 Bacterial export proteins, family 1 CAI18_14215 PF03707 Bacterial signalling protein N terminal repeat CAI18_14215 PF00990 Diguanylate cyclase, GGDEF domain CAI18_14215 PF00563 EAL domain CAI18_14215 PF13188 PAS domain CAI18_14235 PF01312 FlhB HrpN YscU SpaS Family CAI18_14240 PF00771 FHIPEP family CAI18_14245 PF00448 SRP54-type protein, GTPase domain CAI18_14250 PF10609 NUBPL iron-transfer P-loop NTPase CAI18_14255 PF04545 Sigma-70, region 4 CAI18_14255 PF04539 Sigma-70 region 3 CAI18_14255 PF04542 Sigma-70 region 2 CAI18_14260 PF00072 Response regulator receiver domain CAI18_14265 PF04344 Chemotaxis phosphatase, CheZ CAI18_14270 PF02895 Signal transducing histidine kinase, homodimeric domain CAI18_14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_14270 PF01584 CheW-like domain CAI18_14270 PF01627 Hpt domain CAI18_14270 PF00072 Response regulator receiver domain CAI18_14280 PF13186 Iron-sulfur cluster-binding domain CAI18_14280 PF04055 Radical SAM superfamily CAI18_14315 PF01618 MotA/TolQ/ExbB proton channel family CAI18_14320 PF13677 Membrane MotB of proton-channel complex MotA/MotB CAI18_14320 PF00691 OmpA family CAI18_14325 PF13614 AAA domain CAI18_14330 PF01584 CheW-like domain CAI18_14340 PF00072 Response regulator receiver domain CAI18_14345 PF01584 CheW-like domain CAI18_14345 PF09078 CheY binding CAI18_14345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_14345 PF02895 Signal transducing histidine kinase, homodimeric domain CAI18_14345 PF01627 Hpt domain CAI18_14350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14350 PF02203 Tar ligand binding domain homologue CAI18_14350 PF00672 HAMP domain CAI18_14360 PF08269 Cache domain CAI18_14360 PF08269 Cache domain CAI18_14360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14365 PF02203 Tar ligand binding domain homologue CAI18_14365 PF00672 HAMP domain CAI18_14365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14380 PF02203 Tar ligand binding domain homologue CAI18_14380 PF00672 HAMP domain CAI18_14380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14385 PF02203 Tar ligand binding domain homologue CAI18_14385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14385 PF00672 HAMP domain CAI18_14395 PF02203 Tar ligand binding domain homologue CAI18_14395 PF00672 HAMP domain CAI18_14395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14400 PF00672 HAMP domain CAI18_14400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14400 PF02203 Tar ligand binding domain homologue CAI18_14410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14410 PF02203 Tar ligand binding domain homologue CAI18_14410 PF00672 HAMP domain CAI18_14415 PF02203 Tar ligand binding domain homologue CAI18_14415 PF00672 HAMP domain CAI18_14415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14420 PF00672 HAMP domain CAI18_14420 PF02203 Tar ligand binding domain homologue CAI18_14420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14425 PF02203 Tar ligand binding domain homologue CAI18_14425 PF00672 HAMP domain CAI18_14430 PF02203 Tar ligand binding domain homologue CAI18_14430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14430 PF00672 HAMP domain CAI18_14435 PF07317 Flagellar regulator YcgR CAI18_14435 PF07238 PilZ domain CAI18_14440 PF01584 CheW-like domain CAI18_14450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_14450 PF00672 HAMP domain CAI18_14450 PF02203 Tar ligand binding domain homologue CAI18_14455 PF01739 CheR methyltransferase, SAM binding domain CAI18_14455 PF03705 CheR methyltransferase, all-alpha domain CAI18_14460 PF03975 CheD chemotactic sensory transduction CAI18_14465 PF01339 CheB methylesterase CAI18_14465 PF00072 Response regulator receiver domain CAI18_14470 PF00563 EAL domain CAI18_14470 PF00990 Diguanylate cyclase, GGDEF domain CAI18_14470 PF03707 Bacterial signalling protein N terminal repeat CAI18_14475 PF00561 alpha/beta hydrolase fold CAI18_14480 PF00330 Aconitase family (aconitate hydratase) CAI18_14480 PF06434 Aconitate hydratase 2 N-terminus CAI18_14480 PF11791 Aconitate B N-terminal domain CAI18_14495 PF00694 Aconitase C-terminal domain CAI18_14495 PF00330 Aconitase family (aconitate hydratase) CAI18_14505 PF00501 AMP-binding enzyme CAI18_14505 PF13193 AMP-binding enzyme C-terminal domain CAI18_14540 PF00378 Enoyl-CoA hydratase/isomerase CAI18_14545 PF00072 Response regulator receiver domain CAI18_14545 PF01627 Hpt domain CAI18_14545 PF00512 His Kinase A (phospho-acceptor) domain CAI18_14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_14550 PF00072 Response regulator receiver domain CAI18_14555 PF00152 tRNA synthetases class II (D, K and N) CAI18_14555 PF01336 OB-fold nucleic acid binding domain CAI18_14565 PF00072 Response regulator receiver domain CAI18_14565 PF04397 LytTr DNA-binding domain CAI18_14615 PF01368 DHH family CAI18_14615 PF02272 DHHA1 domain CAI18_14615 PF17768 RecJ OB domain CAI18_14625 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI18_14625 PF03449 Transcription elongation factor, N-terminal CAI18_14630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI18_14630 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CAI18_14630 PF02142 MGS-like domain CAI18_14640 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CAI18_14640 PF00117 Glutamine amidotransferase class-I CAI18_14645 PF01113 Dihydrodipicolinate reductase, N-terminus CAI18_14645 PF05173 Dihydrodipicolinate reductase, C-terminus CAI18_14650 PF03475 3-alpha domain CAI18_14650 PF03473 MOSC domain CAI18_14670 PF02421 Ferrous iron transport protein B CAI18_14670 PF07670 Nucleoside recognition CAI18_14670 PF07664 Ferrous iron transport protein B C terminus CAI18_14680 PF00378 Enoyl-CoA hydratase/isomerase CAI18_14690 PF00682 HMGL-like CAI18_14695 PF00106 short chain dehydrogenase CAI18_14700 PF01132 Elongation factor P (EF-P) OB domain CAI18_14700 PF09285 Elongation factor P, C-terminal CAI18_14700 PF08207 Elongation factor P (EF-P) KOW-like domain CAI18_14720 PF01565 FAD binding domain CAI18_14720 PF02913 FAD linked oxidases, C-terminal domain CAI18_14725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CAI18_14725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CAI18_14725 PF01842 ACT domain CAI18_14735 PF13520 Amino acid permease CAI18_14740 PF13520 Amino acid permease CAI18_14745 PF00596 Class II Aldolase and Adducin N-terminal domain CAI18_14750 PF03079 ARD/ARD' family CAI18_14770 PF01502 Phosphoribosyl-AMP cyclohydrolase CAI18_14770 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CAI18_14775 PF00977 Histidine biosynthesis protein CAI18_14780 PF00977 Histidine biosynthesis protein CAI18_14785 PF00117 Glutamine amidotransferase class-I CAI18_14790 PF00475 Imidazoleglycerol-phosphate dehydratase CAI18_14795 PF00155 Aminotransferase class I and II CAI18_14800 PF00815 Histidinol dehydrogenase CAI18_14805 PF08029 HisG, C-terminal domain CAI18_14805 PF01634 ATP phosphoribosyltransferase CAI18_14815 PF13393 Histidyl-tRNA synthetase CAI18_14815 PF03129 Anticodon binding domain CAI18_14820 PF00027 Cyclic nucleotide-binding domain CAI18_14820 PF13545 Crp-like helix-turn-helix domain CAI18_14830 PF00291 Pyridoxal-phosphate dependent enzyme CAI18_14830 PF14821 Threonine synthase N terminus CAI18_14840 PF08544 GHMP kinases C terminal CAI18_14840 PF00288 GHMP kinases N terminal domain CAI18_14845 PF03447 Homoserine dehydrogenase, NAD binding domain CAI18_14845 PF00742 Homoserine dehydrogenase CAI18_14845 PF13840 ACT domain CAI18_14845 PF01842 ACT domain CAI18_14845 PF00696 Amino acid kinase family CAI18_14855 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CAI18_14855 PF13018 Extended Signal Peptide of Type V secretion system CAI18_14855 PF05594 Haemagluttinin repeat CAI18_14855 PF13332 Hemagglutinin repeat CAI18_14855 PF05860 haemagglutination activity domain CAI18_14905 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CAI18_14905 PF17287 POTRA domain CAI18_14905 PF08479 POTRA domain, ShlB-type CAI18_14915 PF14883 Hypothetical glycosyl hydrolase family 13 CAI18_14915 PF01522 Polysaccharide deacetylase CAI18_14945 PF02794 RTX toxin acyltransferase family CAI18_15010 PF07532 Bacterial Ig-like domain (group 4) CAI18_15020 PF07715 TonB-dependent Receptor Plug Domain CAI18_15020 PF00593 TonB dependent receptor CAI18_15060 PF13520 Amino acid permease CAI18_15080 PF00557 Metallopeptidase family M24 CAI18_15080 PF01321 Creatinase/Prolidase N-terminal domain CAI18_15085 PF00171 Aldehyde dehydrogenase family CAI18_15090 PF00701 Dihydrodipicolinate synthetase family CAI18_15095 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_15095 PF04324 BFD-like [2Fe-2S] binding domain CAI18_15105 PF01266 FAD dependent oxidoreductase CAI18_15110 PF05544 Proline racemase CAI18_15120 PF00448 SRP54-type protein, GTPase domain CAI18_15120 PF02881 SRP54-type protein, helical bundle domain CAI18_15130 PF00633 Helix-hairpin-helix motif CAI18_15130 PF14815 NUDIX domain CAI18_15130 PF10576 Iron-sulfur binding domain of endonuclease III CAI18_15130 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI18_15135 PF04362 Bacterial Fe(2+) trafficking CAI18_15140 PF13426 PAS domain CAI18_15140 PF00072 Response regulator receiver domain CAI18_15140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_15185 PF08212 Lipocalin-like domain CAI18_15200 PF02770 Acyl-CoA dehydrogenase, middle domain CAI18_15200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_15200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_15200 PF12806 Acetyl-CoA dehydrogenase C-terminal like CAI18_15210 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CAI18_15210 PF02779 Transketolase, pyrimidine binding domain CAI18_15210 PF02780 Transketolase, C-terminal domain CAI18_15230 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CAI18_15235 PF16123 Hydroxyacylglutathione hydrolase C-terminus CAI18_15235 PF00753 Metallo-beta-lactamase superfamily CAI18_15240 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI18_15240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI18_15255 PF03808 Glycosyl transferase WecB/TagA/CpsF family CAI18_15270 PF14667 Polysaccharide biosynthesis C-terminal domain CAI18_15280 PF13439 Glycosyltransferase Family 4 CAI18_15280 PF00534 Glycosyl transferases group 1 CAI18_15300 PF02397 Bacterial sugar transferase CAI18_15320 PF13411 MerR HTH family regulatory protein CAI18_15325 PF00216 Bacterial DNA-binding protein CAI18_15330 PF03483 B3/4 domain CAI18_15330 PF03484 tRNA synthetase B5 domain CAI18_15330 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CAI18_15330 PF01588 Putative tRNA binding domain CAI18_15330 PF03147 Ferredoxin-fold anticodon binding domain CAI18_15335 PF01409 tRNA synthetases class II core domain (F) CAI18_15335 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CAI18_15340 PF00453 Ribosomal protein L20 CAI18_15345 PF01632 Ribosomal protein L35 CAI18_15350 PF05198 Translation initiation factor IF-3, N-terminal domain CAI18_15350 PF00707 Translation initiation factor IF-3, C-terminal domain CAI18_15355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CAI18_15355 PF03129 Anticodon binding domain CAI18_15355 PF02824 TGS domain CAI18_15355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI18_15360 PF00356 Bacterial regulatory proteins, lacI family CAI18_15385 PF01464 Transglycosylase SLT domain CAI18_15405 PF03743 Bacterial conjugation TrbI-like protein CAI18_15425 PF02534 Type IV secretory system Conjugative DNA transfer CAI18_15445 PF12344 Ultra-violet resistance protein B CAI18_15445 PF04851 Type III restriction enzyme, res subunit CAI18_15445 PF00271 Helicase conserved C-terminal domain CAI18_15445 PF17757 UvrB interaction domain CAI18_15445 PF02151 UvrB/uvrC motif CAI18_15475 PF05567 Neisseria PilC beta-propeller domain CAI18_15495 PF00114 Pilin (bacterial filament) CAI18_15495 PF07963 Prokaryotic N-terminal methylation motif CAI18_15500 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CAI18_15500 PF11892 Domain of unknown function (DUF3412) CAI18_15500 PF03641 Possible lysine decarboxylase CAI18_15505 PF00593 TonB dependent receptor CAI18_15515 PF01914 MarC family integral membrane protein CAI18_15525 PF00462 Glutaredoxin CAI18_15530 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CAI18_15530 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CAI18_15535 PF02222 ATP-grasp domain CAI18_15535 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CAI18_15540 PF00731 AIR carboxylase CAI18_15550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CAI18_15550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CAI18_15560 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CAI18_15560 PF00575 S1 RNA binding domain CAI18_15560 PF00013 KH domain CAI18_15560 PF03725 3' exoribonuclease family, domain 2 CAI18_15560 PF01138 3' exoribonuclease family, domain 1 CAI18_15565 PF00312 Ribosomal protein S15 CAI18_15570 PF01509 TruB family pseudouridylate synthase (N terminal domain) CAI18_15570 PF09157 Pseudouridine synthase II TruB, C-terminal CAI18_15570 PF16198 tRNA pseudouridylate synthase B C-terminal domain CAI18_15575 PF02033 Ribosome-binding factor A CAI18_15580 PF00009 Elongation factor Tu GTP binding domain CAI18_15580 PF08364 Bacterial translation initiation factor IF-2 associated region CAI18_15580 PF04760 Translation initiation factor IF-2, N-terminal region CAI18_15580 PF11987 Translation-initiation factor 2 CAI18_15585 PF00575 S1 RNA binding domain CAI18_15585 PF08529 NusA N-terminal domain CAI18_15585 PF13184 NusA-like KH domain CAI18_15590 PF17384 RimP C-terminal SH3 domain CAI18_15590 PF02576 RimP N-terminal domain CAI18_15600 PF00361 Proton-conducting membrane transporter CAI18_15605 PF00361 Proton-conducting membrane transporter CAI18_15605 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CAI18_15610 PF00361 Proton-conducting membrane transporter CAI18_15610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CAI18_15615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CAI18_15620 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CAI18_15625 PF12838 4Fe-4S dicluster domain CAI18_15630 PF00146 NADH dehydrogenase CAI18_15635 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CAI18_15635 PF00384 Molybdopterin oxidoreductase CAI18_15635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CAI18_15640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CAI18_15640 PF10531 SLBB domain CAI18_15640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CAI18_15650 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CAI18_15655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CAI18_15660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CAI18_15665 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CAI18_15680 PF00121 Triosephosphate isomerase CAI18_15685 PF00106 short chain dehydrogenase CAI18_15700 PF00563 EAL domain CAI18_15700 PF03707 Bacterial signalling protein N terminal repeat CAI18_15700 PF00990 Diguanylate cyclase, GGDEF domain CAI18_15715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI18_15715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI18_15715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI18_15715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI18_15720 PF17848 Acetyl-coA carboxylase zinc finger domain CAI18_15720 PF01039 Carboxyl transferase domain CAI18_15725 PF00290 Tryptophan synthase alpha chain CAI18_15735 PF00291 Pyridoxal-phosphate dependent enzyme CAI18_15740 PF03466 LysR substrate binding domain CAI18_15740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_15745 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CAI18_15750 PF01416 tRNA pseudouridine synthase CAI18_15775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CAI18_15775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CAI18_15780 PF01264 Chorismate synthase CAI18_15785 PF05175 Methyltransferase small domain CAI18_15790 PF02630 SCO1/SenC CAI18_15795 PF02666 Phosphatidylserine decarboxylase CAI18_15810 PF05872 Bacterial protein of unknown function (DUF853) CAI18_15815 PF00293 NUDIX domain CAI18_15835 PF03449 Transcription elongation factor, N-terminal CAI18_15835 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI18_15840 PF04055 Radical SAM superfamily CAI18_15840 PF18693 TRAM domain CAI18_15840 PF00919 Uncharacterized protein family UPF0004 CAI18_15850 PF00717 Peptidase S24-like CAI18_15855 PF13438 Domain of unknown function (DUF4113) CAI18_15855 PF11799 impB/mucB/samB family C-terminal domain CAI18_15855 PF11798 IMS family HHH motif CAI18_15855 PF00817 impB/mucB/samB family CAI18_15875 PF01555 DNA methylase CAI18_15930 PF00182 Chitinase class I CAI18_16115 PF01738 Dienelactone hydrolase family CAI18_16135 PF00692 dUTPase CAI18_16145 PF10609 NUBPL iron-transfer P-loop NTPase CAI18_16150 PF00593 TonB dependent receptor CAI18_16150 PF07715 TonB-dependent Receptor Plug Domain CAI18_16170 PF05192 MutS domain III CAI18_16170 PF01624 MutS domain I CAI18_16170 PF05188 MutS domain II CAI18_16170 PF00488 MutS domain V CAI18_16170 PF05190 MutS family domain IV CAI18_16180 PF00141 Peroxidase CAI18_16185 PF01479 S4 domain CAI18_16200 PF01554 MatE CAI18_16205 PF01245 Ribosomal protein L19 CAI18_16210 PF01746 tRNA (Guanine-1)-methyltransferase CAI18_16215 PF05239 PRC-barrel domain CAI18_16215 PF01782 RimM N-terminal domain CAI18_16220 PF00886 Ribosomal protein S16 CAI18_16225 PF01063 Amino-transferase class IV CAI18_16230 PF03060 Nitronate monooxygenase CAI18_16235 PF02881 SRP54-type protein, helical bundle domain CAI18_16235 PF02978 Signal peptide binding domain CAI18_16235 PF00448 SRP54-type protein, GTPase domain CAI18_16240 PF01578 Cytochrome C assembly protein CAI18_16245 PF01263 Aldose 1-epimerase CAI18_16250 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CAI18_16260 PF00072 Response regulator receiver domain CAI18_16280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_16280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CAI18_16280 PF00672 HAMP domain CAI18_16280 PF01627 Hpt domain CAI18_16280 PF00512 His Kinase A (phospho-acceptor) domain CAI18_16280 PF00072 Response regulator receiver domain CAI18_16285 PF01739 CheR methyltransferase, SAM binding domain CAI18_16285 PF03705 CheR methyltransferase, all-alpha domain CAI18_16290 PF01339 CheB methylesterase CAI18_16295 PF13493 Domain of unknown function (DUF4118) CAI18_16295 PF13492 GAF domain CAI18_16295 PF00512 His Kinase A (phospho-acceptor) domain CAI18_16295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_16295 PF02702 Osmosensitive K+ channel His kinase sensor domain CAI18_16300 PF07237 Protein of unknown function (DUF1428) CAI18_16305 PF00085 Thioredoxin CAI18_16310 PF00593 TonB dependent receptor CAI18_16310 PF07715 TonB-dependent Receptor Plug Domain CAI18_16315 PF04616 Glycosyl hydrolases family 43 CAI18_16315 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CAI18_16325 PF00672 HAMP domain CAI18_16325 PF01627 Hpt domain CAI18_16325 PF00512 His Kinase A (phospho-acceptor) domain CAI18_16325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_16325 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI18_16325 PF00072 Response regulator receiver domain CAI18_16335 PF13581 Histidine kinase-like ATPase domain CAI18_16340 PF01740 STAS domain CAI18_16345 PF08678 Rsbr N terminal CAI18_16345 PF01740 STAS domain CAI18_16355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_16355 PF00183 Hsp90 protein CAI18_16360 PF12833 Helix-turn-helix domain CAI18_16370 PF05656 Protein of unknown function (DUF805) CAI18_16375 PF18073 Rubredoxin metal binding domain CAI18_16385 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CAI18_16390 PF00510 Cytochrome c oxidase subunit III CAI18_16395 PF00115 Cytochrome C and Quinol oxidase polypeptide I CAI18_16400 PF06481 COX Aromatic Rich Motif CAI18_16400 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CAI18_16410 PF02401 LytB protein CAI18_16415 PF01252 Signal peptidase (SPase) II CAI18_16420 PF08264 Anticodon-binding domain of tRNA CAI18_16420 PF00133 tRNA synthetases class I (I, L, M and V) CAI18_16420 PF06827 Zinc finger found in FPG and IleRS CAI18_16425 PF01687 Riboflavin kinase CAI18_16425 PF06574 FAD synthetase CAI18_16430 PF03023 Lipid II flippase MurJ CAI18_16435 PF01649 Ribosomal protein S20 CAI18_16440 PF01018 GTP1/OBG CAI18_16440 PF01926 50S ribosome-binding GTPase CAI18_16445 PF01016 Ribosomal L27 protein CAI18_16450 PF00829 Ribosomal prokaryotic L21 protein CAI18_16455 PF00005 ABC transporter CAI18_16455 PF17760 UvrA interaction domain CAI18_16455 PF17755 UvrA DNA-binding domain CAI18_16470 PF00378 Enoyl-CoA hydratase/isomerase CAI18_16510 PF04376 Arginine-tRNA-protein transferase, N terminus CAI18_16510 PF04377 Arginine-tRNA-protein transferase, C terminus CAI18_16520 PF02222 ATP-grasp domain CAI18_16550 PF00730 HhH-GPD superfamily base excision DNA repair protein CAI18_16565 PF00196 Bacterial regulatory proteins, luxR family CAI18_16565 PF00072 Response regulator receiver domain CAI18_16570 PF07730 Histidine kinase CAI18_16585 PF05209 Septum formation inhibitor MinC, N-terminal domain CAI18_16585 PF03775 Septum formation inhibitor MinC, C-terminal domain CAI18_16590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CAI18_16595 PF03776 Septum formation topological specificity factor MinE CAI18_16605 PF00512 His Kinase A (phospho-acceptor) domain CAI18_16605 PF08521 Two-component sensor kinase N-terminal CAI18_16605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_16610 PF00072 Response regulator receiver domain CAI18_16610 PF00486 Transcriptional regulatory protein, C terminal CAI18_16625 PF00884 Sulfatase CAI18_16625 PF08019 Phosphoethanolamine transferase EptA/EptB CAI18_16640 PF07690 Major Facilitator Superfamily CAI18_16645 PF02347 Glycine cleavage system P-protein CAI18_16650 PF00135 Carboxylesterase family CAI18_16655 PF00248 Aldo/keto reductase family CAI18_16660 PF00199 Catalase CAI18_16660 PF18011 C-terminal domain found in long catalases CAI18_16660 PF06628 Catalase-related immune-responsive CAI18_16685 PF12833 Helix-turn-helix domain CAI18_16685 PF02311 AraC-like ligand binding domain CAI18_16745 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_16755 PF00106 short chain dehydrogenase CAI18_16760 PF07971 Glycosyl hydrolase family 92 CAI18_16760 PF17678 Glycosyl hydrolase family 92 N-terminal domain CAI18_16775 PF00723 Glycosyl hydrolases family 15 CAI18_16785 PF01256 Carbohydrate kinase CAI18_16790 PF13456 Reverse transcriptase-like CAI18_16790 PF00300 Histidine phosphatase superfamily (branch 1) CAI18_16825 PF08463 EcoEI R protein C-terminal CAI18_16825 PF00271 Helicase conserved C-terminal domain CAI18_16825 PF04851 Type III restriction enzyme, res subunit CAI18_16825 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CAI18_16835 PF02384 N-6 DNA Methylase CAI18_16850 PF01420 Type I restriction modification DNA specificity domain CAI18_16880 PF00440 Bacterial regulatory proteins, tetR family CAI18_16890 PF11838 ERAP1-like C-terminal domain CAI18_16890 PF01433 Peptidase family M1 domain CAI18_16895 PF00709 Adenylosuccinate synthetase CAI18_16905 PF01145 SPFH domain / Band 7 family CAI18_16910 PF12221 Bacterial membrane protein N terminal CAI18_16910 PF01145 SPFH domain / Band 7 family CAI18_16915 PF00072 Response regulator receiver domain CAI18_16920 PF01556 DnaJ C terminal domain CAI18_16920 PF00226 DnaJ domain CAI18_16930 PF08534 Redoxin CAI18_16940 PF00912 Transglycosylase CAI18_16940 PF00905 Penicillin binding protein transpeptidase domain CAI18_16940 PF06832 Penicillin-Binding Protein C-terminus Family CAI18_16960 PF07703 Alpha-2-macroglobulin bait region domain CAI18_16960 PF00207 Alpha-2-macroglobulin family CAI18_16960 PF01835 MG2 domain CAI18_16960 PF17962 Bacterial macroglobulin domain 6 CAI18_16960 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CAI18_16960 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CAI18_16960 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CAI18_16960 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CAI18_16975 PF00593 TonB dependent receptor CAI18_16975 PF07715 TonB-dependent Receptor Plug Domain CAI18_16980 PF04303 PrpF protein CAI18_16995 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CAI18_17000 PF00694 Aconitase C-terminal domain CAI18_17000 PF00330 Aconitase family (aconitate hydratase) CAI18_17005 PF00285 Citrate synthase, C-terminal domain CAI18_17015 PF06506 Propionate catabolism activator CAI18_17015 PF00158 Sigma-54 interaction domain CAI18_17015 PF02954 Bacterial regulatory protein, Fis family CAI18_17035 PF09115 DNA polymerase III, delta subunit, C terminal CAI18_17040 PF02618 YceG-like family CAI18_17045 PF00425 chorismate binding enzyme CAI18_17045 PF04715 Anthranilate synthase component I, N terminal region CAI18_17050 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI18_17050 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI18_17055 PF00550 Phosphopantetheine attachment site CAI18_17065 PF00698 Acyl transferase domain CAI18_17075 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CAI18_17075 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CAI18_17080 PF01783 Ribosomal L32p protein family CAI18_17085 PF02620 Large ribosomal RNA subunit accumulation protein YceD CAI18_17090 PF02545 Maf-like protein CAI18_17120 PF07726 ATPase family associated with various cellular activities (AAA) CAI18_17120 PF17863 AAA lid domain CAI18_17130 PF01841 Transglutaminase-like superfamily CAI18_17130 PF13559 Domain of unknown function (DUF4129) CAI18_17130 PF11992 Domain of unknown function (DUF3488) CAI18_17140 PF01230 HIT domain CAI18_17145 PF13662 Toprim domain CAI18_17145 PF02132 RecR protein CAI18_17150 PF02575 YbaB/EbfC DNA-binding family CAI18_17155 PF12169 DNA polymerase III subunits gamma and tau domain III CAI18_17155 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CAI18_17155 PF12170 DNA polymerase III tau subunit V interacting with alpha CAI18_17170 PF02391 MoaE protein CAI18_17175 PF02597 ThiS family CAI18_17180 PF01967 MoaC family CAI18_17185 PF04055 Radical SAM superfamily CAI18_17185 PF06463 Molybdenum Cofactor Synthesis C CAI18_17190 PF12706 Beta-lactamase superfamily domain CAI18_17190 PF00753 Metallo-beta-lactamase superfamily CAI18_17200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CAI18_17220 PF00929 Exonuclease CAI18_17225 PF00075 RNase H CAI18_17235 PF00753 Metallo-beta-lactamase superfamily CAI18_17235 PF16123 Hydroxyacylglutathione hydrolase C-terminus CAI18_17240 PF01476 LysM domain CAI18_17240 PF05257 CHAP domain CAI18_17260 PF00216 Bacterial DNA-binding protein CAI18_17265 PF00004 ATPase family associated with various cellular activities (AAA) CAI18_17265 PF05362 Lon protease (S16) C-terminal proteolytic domain CAI18_17265 PF02190 ATP-dependent protease La (LON) substrate-binding domain CAI18_17270 PF07724 AAA domain (Cdc48 subfamily) CAI18_17270 PF06689 ClpX C4-type zinc finger CAI18_17270 PF10431 C-terminal, D2-small domain, of ClpB protein CAI18_17275 PF00574 Clp protease CAI18_17280 PF05697 Bacterial trigger factor protein (TF) CAI18_17280 PF05698 Bacterial trigger factor protein (TF) C-terminus CAI18_17290 PF00989 PAS fold CAI18_17290 PF00512 His Kinase A (phospho-acceptor) domain CAI18_17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_17320 PF00180 Isocitrate/isopropylmalate dehydrogenase CAI18_17330 PF00462 Glutaredoxin CAI18_17335 PF01435 Peptidase family M48 CAI18_17335 PF13181 Tetratricopeptide repeat CAI18_17340 PF00072 Response regulator receiver domain CAI18_17340 PF00486 Transcriptional regulatory protein, C terminal CAI18_17345 PF00512 His Kinase A (phospho-acceptor) domain CAI18_17345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_17345 PF11808 Phosphate regulon sensor protein PhoR CAI18_17345 PF00989 PAS fold CAI18_17350 PF17941 Polyphosphate kinase C-terminal domain 1 CAI18_17350 PF13089 Polyphosphate kinase N-terminal domain CAI18_17350 PF13090 Polyphosphate kinase C-terminal domain 2 CAI18_17350 PF02503 Polyphosphate kinase middle domain CAI18_17355 PF02541 Ppx/GppA phosphatase family CAI18_17360 PF00534 Glycosyl transferases group 1 CAI18_17360 PF13439 Glycosyltransferase Family 4 CAI18_17365 PF01569 PAP2 superfamily CAI18_17370 PF00149 Calcineurin-like phosphoesterase CAI18_17390 PF04305 Protein of unknown function (DUF455) CAI18_17395 PF00156 Phosphoribosyl transferase domain CAI18_17410 PF08245 Mur ligase middle domain CAI18_17410 PF02875 Mur ligase family, glutamate ligase domain CAI18_17420 PF00300 Histidine phosphatase superfamily (branch 1) CAI18_17425 PF10459 Peptidase S46 CAI18_17455 PF00107 Zinc-binding dehydrogenase CAI18_17455 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_17465 PF12857 TOBE-like domain CAI18_17465 PF17850 CysA C-terminal regulatory domain CAI18_17465 PF00005 ABC transporter CAI18_17470 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_17475 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_17485 PF00155 Aminotransferase class I and II CAI18_17495 PF00849 RNA pseudouridylate synthase CAI18_17505 PF00691 OmpA family CAI18_17505 PF05736 OprF membrane domain CAI18_17520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CAI18_17520 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_17540 PF02798 Glutathione S-transferase, N-terminal domain CAI18_17540 PF00043 Glutathione S-transferase, C-terminal domain CAI18_17550 PF00056 lactate/malate dehydrogenase, NAD binding domain CAI18_17550 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CAI18_17555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CAI18_17570 PF01425 Amidase CAI18_17580 PF01474 Class-II DAHP synthetase family CAI18_17600 PF02600 Disulfide bond formation protein DsbB CAI18_17605 PF01196 Ribosomal protein L17 CAI18_17610 PF01000 RNA polymerase Rpb3/RpoA insert domain CAI18_17610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CAI18_17610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CAI18_17615 PF00163 Ribosomal protein S4/S9 N-terminal domain CAI18_17615 PF01479 S4 domain CAI18_17620 PF00411 Ribosomal protein S11 CAI18_17625 PF00416 Ribosomal protein S13/S18 CAI18_17630 PF00344 SecY translocase CAI18_17635 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CAI18_17640 PF00327 Ribosomal protein L30p/L7e CAI18_17645 PF03719 Ribosomal protein S5, C-terminal domain CAI18_17645 PF00333 Ribosomal protein S5, N-terminal domain CAI18_17650 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CAI18_17655 PF00347 Ribosomal protein L6 CAI18_17660 PF00410 Ribosomal protein S8 CAI18_17665 PF00253 Ribosomal protein S14p/S29e CAI18_17670 PF00281 Ribosomal protein L5 CAI18_17670 PF00673 ribosomal L5P family C-terminus CAI18_17675 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CAI18_17675 PF00467 KOW motif CAI18_17680 PF00238 Ribosomal protein L14p/L23e CAI18_17685 PF00366 Ribosomal protein S17 CAI18_17690 PF00831 Ribosomal L29 protein CAI18_17695 PF00252 Ribosomal protein L16p/L10e CAI18_17700 PF07650 KH domain CAI18_17700 PF00189 Ribosomal protein S3, C-terminal domain CAI18_17705 PF00237 Ribosomal protein L22p/L17e CAI18_17710 PF00203 Ribosomal protein S19 CAI18_17715 PF00181 Ribosomal Proteins L2, RNA binding domain CAI18_17715 PF03947 Ribosomal Proteins L2, C-terminal domain CAI18_17720 PF00276 Ribosomal protein L23 CAI18_17725 PF00573 Ribosomal protein L4/L1 family CAI18_17730 PF00297 Ribosomal protein L3 CAI18_17735 PF00338 Ribosomal protein S10p/S20e CAI18_17740 PF03144 Elongation factor Tu domain 2 CAI18_17740 PF03143 Elongation factor Tu C-terminal domain CAI18_17740 PF00009 Elongation factor Tu GTP binding domain CAI18_17745 PF03144 Elongation factor Tu domain 2 CAI18_17745 PF03764 Elongation factor G, domain IV CAI18_17745 PF14492 Elongation Factor G, domain II CAI18_17745 PF00679 Elongation factor G C-terminus CAI18_17745 PF00009 Elongation factor Tu GTP binding domain CAI18_17750 PF00177 Ribosomal protein S7p/S5e CAI18_17755 PF00164 Ribosomal protein S12/S23 CAI18_17760 PF00623 RNA polymerase Rpb1, domain 2 CAI18_17760 PF04983 RNA polymerase Rpb1, domain 3 CAI18_17760 PF05000 RNA polymerase Rpb1, domain 4 CAI18_17760 PF04997 RNA polymerase Rpb1, domain 1 CAI18_17760 PF04998 RNA polymerase Rpb1, domain 5 CAI18_17765 PF10385 RNA polymerase beta subunit external 1 domain CAI18_17765 PF00562 RNA polymerase Rpb2, domain 6 CAI18_17765 PF04560 RNA polymerase Rpb2, domain 7 CAI18_17765 PF04563 RNA polymerase beta subunit CAI18_17765 PF04565 RNA polymerase Rpb2, domain 3 CAI18_17765 PF04561 RNA polymerase Rpb2, domain 2 CAI18_17770 PF00542 Ribosomal protein L7/L12 C-terminal domain CAI18_17770 PF16320 Ribosomal protein L7/L12 dimerisation domain CAI18_17775 PF00466 Ribosomal protein L10 CAI18_17780 PF00687 Ribosomal protein L1p/L10e family CAI18_17785 PF00298 Ribosomal protein L11, RNA binding domain CAI18_17785 PF03946 Ribosomal protein L11, N-terminal domain CAI18_17790 PF02357 Transcription termination factor nusG CAI18_17790 PF00467 KOW motif CAI18_17795 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CAI18_17805 PF03143 Elongation factor Tu C-terminal domain CAI18_17805 PF03144 Elongation factor Tu domain 2 CAI18_17805 PF00009 Elongation factor Tu GTP binding domain CAI18_17825 PF01926 50S ribosome-binding GTPase CAI18_17825 PF06071 Protein of unknown function (DUF933) CAI18_17830 PF01195 Peptidyl-tRNA hydrolase CAI18_17835 PF01386 Ribosomal L25p family CAI18_17835 PF14693 Ribosomal protein TL5, C-terminal domain CAI18_17840 PF14572 Phosphoribosyl synthetase-associated domain CAI18_17840 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CAI18_17850 PF00288 GHMP kinases N terminal domain CAI18_17850 PF08544 GHMP kinases C terminal CAI18_17855 PF03550 Outer membrane lipoprotein LolB CAI18_17865 PF01488 Shikimate / quinate 5-dehydrogenase CAI18_17865 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CAI18_17865 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CAI18_17870 PF00472 RF-1 domain CAI18_17870 PF03462 PCRF domain CAI18_17890 PF03976 Polyphosphate kinase 2 (PPK2) CAI18_17900 PF00708 Acylphosphatase CAI18_17910 PF03631 Virulence factor BrkB CAI18_17915 PF03358 NADPH-dependent FMN reductase CAI18_17925 PF17189 Glycosyl hydrolase family 30 beta sandwich domain CAI18_17925 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain CAI18_17935 PF04073 Aminoacyl-tRNA editing domain CAI18_17940 PF04151 Bacterial pre-peptidase C-terminal domain CAI18_17940 PF00082 Subtilase family CAI18_17950 PF04151 Bacterial pre-peptidase C-terminal domain CAI18_17950 PF00082 Subtilase family CAI18_17960 PF01063 Amino-transferase class IV CAI18_17975 PF02233 NAD(P) transhydrogenase beta subunit CAI18_17980 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CAI18_18000 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CAI18_18000 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CAI18_18000 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CAI18_18030 PF00476 DNA polymerase family A CAI18_18030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CAI18_18030 PF01367 5'-3' exonuclease, C-terminal SAM fold CAI18_18030 PF01612 3'-5' exonuclease CAI18_18035 PF00293 NUDIX domain CAI18_18045 PF00561 alpha/beta hydrolase fold CAI18_18050 PF05175 Methyltransferase small domain CAI18_18050 PF17827 PrmC N-terminal domain CAI18_18055 PF00578 AhpC/TSA family CAI18_18055 PF10417 C-terminal domain of 1-Cys peroxiredoxin CAI18_18060 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_18060 PF13192 Thioredoxin domain CAI18_18065 PF03466 LysR substrate binding domain CAI18_18065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_18075 PF14760 Rnk N-terminus CAI18_18075 PF01272 Transcription elongation factor, GreA/GreB, C-term CAI18_18080 PF00923 Transaldolase/Fructose-6-phosphate aldolase CAI18_18090 PF01625 Peptide methionine sulfoxide reductase CAI18_18105 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI18_18105 PF01627 Hpt domain CAI18_18105 PF00672 HAMP domain CAI18_18105 PF00072 Response regulator receiver domain CAI18_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_18105 PF00512 His Kinase A (phospho-acceptor) domain CAI18_18110 PF00072 Response regulator receiver domain CAI18_18110 PF00990 Diguanylate cyclase, GGDEF domain CAI18_18125 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CAI18_18125 PF00749 tRNA synthetases class I (E and Q), catalytic domain CAI18_18135 PF00892 EamA-like transporter family CAI18_18155 PF18125 RlmM ferredoxin-like domain CAI18_18155 PF01728 FtsJ-like methyltransferase CAI18_18165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CAI18_18165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CAI18_18170 PF08450 SMP-30/Gluconolactonase/LRE-like region CAI18_18190 PF00378 Enoyl-CoA hydratase/isomerase CAI18_18195 PF00171 Aldehyde dehydrogenase family CAI18_18200 PF00501 AMP-binding enzyme CAI18_18200 PF13193 AMP-binding enzyme C-terminal domain CAI18_18205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_18205 PF03466 LysR substrate binding domain CAI18_18210 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CAI18_18210 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit CAI18_18215 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CAI18_18220 PF07729 FCD domain CAI18_18220 PF00392 Bacterial regulatory proteins, gntR family CAI18_18240 PF01494 FAD binding domain CAI18_18245 PF01494 FAD binding domain CAI18_18260 PF01923 Cobalamin adenosyltransferase CAI18_18265 PF00850 Histone deacetylase domain CAI18_18270 PF04453 LPS transport system D CAI18_18270 PF03968 OstA-like protein CAI18_18275 PF09312 SurA N-terminal domain CAI18_18275 PF00639 PPIC-type PPIASE domain CAI18_18280 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CAI18_18285 PF00398 Ribosomal RNA adenine dimethylase CAI18_18290 PF04379 ApaG domain CAI18_18295 PF00149 Calcineurin-like phosphoesterase CAI18_18300 PF00005 ABC transporter CAI18_18300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CAI18_18310 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_18315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CAI18_18320 PF00296 Luciferase-like monooxygenase CAI18_18340 PF03358 NADPH-dependent FMN reductase CAI18_18345 PF00296 Luciferase-like monooxygenase CAI18_18355 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_18360 PF00005 ABC transporter CAI18_18365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_18365 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CAI18_18370 PF00158 Sigma-54 interaction domain CAI18_18375 PF00186 Dihydrofolate reductase CAI18_18385 PF00303 Thymidylate synthase CAI18_18390 PF01790 Prolipoprotein diacylglyceryl transferase CAI18_18425 PF00300 Histidine phosphatase superfamily (branch 1) CAI18_18430 PF04493 Endonuclease V CAI18_18440 PF02678 Pirin CAI18_18440 PF05726 Pirin C-terminal cupin domain CAI18_18455 PF02678 Pirin CAI18_18455 PF05726 Pirin C-terminal cupin domain CAI18_18460 PF02554 Carbon starvation protein CstA CAI18_18460 PF13722 5TM C-terminal transporter carbon starvation CstA CAI18_18465 PF04328 Selenoprotein, putative CAI18_18515 PF02625 XdhC and CoxI family CAI18_18515 PF13478 XdhC Rossmann domain CAI18_18520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CAI18_18520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CAI18_18525 PF00941 FAD binding domain in molybdopterin dehydrogenase CAI18_18525 PF03450 CO dehydrogenase flavoprotein C-terminal domain CAI18_18530 PF00111 2Fe-2S iron-sulfur cluster binding domain CAI18_18530 PF10518 TAT (twin-arginine translocation) pathway signal sequence CAI18_18530 PF01799 [2Fe-2S] binding domain CAI18_18535 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI18_18535 PF16197 Ketoacyl-synthetase C-terminal extension CAI18_18535 PF14765 Polyketide synthase dehydratase CAI18_18535 PF08659 KR domain CAI18_18535 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI18_18535 PF00550 Phosphopantetheine attachment site CAI18_18535 PF00107 Zinc-binding dehydrogenase CAI18_18535 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_18535 PF00698 Acyl transferase domain CAI18_18540 PF00360 Phytochrome region CAI18_18540 PF00563 EAL domain CAI18_18540 PF01590 GAF domain CAI18_18540 PF00990 Diguanylate cyclase, GGDEF domain CAI18_18545 PF00436 Single-strand binding protein family CAI18_18550 PF00348 Polyprenyl synthetase CAI18_18565 PF08245 Mur ligase middle domain CAI18_18565 PF02875 Mur ligase family, glutamate ligase domain CAI18_18580 PF00696 Amino acid kinase family CAI18_18580 PF01842 ACT domain CAI18_18585 PF02567 Phenazine biosynthesis-like protein CAI18_18600 PF02566 OsmC-like protein CAI18_18605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CAI18_18605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CAI18_18610 PF03652 Holliday junction resolvase CAI18_18615 PF02622 Uncharacterized ACR, COG1678 CAI18_18625 PF13302 Acetyltransferase (GNAT) domain CAI18_18625 PF03352 Methyladenine glycosylase CAI18_18625 PF00117 Glutamine amidotransferase class-I CAI18_18625 PF00958 GMP synthase C terminal domain CAI18_18625 PF13673 Acetyltransferase (GNAT) domain CAI18_18635 PF03211 Pectate lyase CAI18_18640 PF00437 Type II/IV secretion system protein CAI18_18645 PF00437 Type II/IV secretion system protein CAI18_18650 PF01168 Alanine racemase, N-terminal domain CAI18_18655 PF03807 NADP oxidoreductase coenzyme F420-dependent CAI18_18655 PF14748 Pyrroline-5-carboxylate reductase dimerisation CAI18_18665 PF01551 Peptidase family M23 CAI18_18685 PF01965 DJ-1/PfpI family CAI18_18695 PF02082 Transcriptional regulator CAI18_18700 PF01458 Uncharacterized protein family (UPF0051) CAI18_18705 PF00005 ABC transporter CAI18_18710 PF01458 Uncharacterized protein family (UPF0051) CAI18_18715 PF00266 Aminotransferase class-V CAI18_18725 PF00355 Rieske [2Fe-2S] domain CAI18_18730 PF00593 TonB dependent receptor CAI18_18730 PF07715 TonB-dependent Receptor Plug Domain CAI18_18735 PF13640 2OG-Fe(II) oxygenase superfamily CAI18_18735 PF18331 PKHD-type hydroxylase C-terminal domain CAI18_18760 PF02424 ApbE family CAI18_18765 PF00667 FAD binding domain CAI18_18765 PF00175 Oxidoreductase NAD-binding domain CAI18_18765 PF00258 Flavodoxin CAI18_18795 PF01636 Phosphotransferase enzyme family CAI18_18800 PF00483 Nucleotidyl transferase CAI18_18805 PF00308 Bacterial dnaA protein CAI18_18810 PF01594 AI-2E family transporter CAI18_18820 PF02769 AIR synthase related protein, C-terminal domain CAI18_18820 PF00586 AIR synthase related protein, N-terminal domain CAI18_18830 PF00551 Formyl transferase CAI18_18850 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CAI18_18855 PF01722 BolA-like protein CAI18_18860 PF00571 CBS domain CAI18_18860 PF01380 SIS domain CAI18_18875 PF03968 OstA-like protein CAI18_18880 PF00005 ABC transporter CAI18_18885 PF04552 Sigma-54, DNA binding domain CAI18_18885 PF04963 Sigma-54 factor, core binding domain CAI18_18885 PF00309 Sigma-54 factor, Activator interacting domain (AID) CAI18_18890 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CAI18_18895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CAI18_18900 PF02603 HPr Serine kinase N terminus CAI18_18900 PF07475 HPr Serine kinase C-terminal domain CAI18_18905 PF03668 P-loop ATPase protein family CAI18_18915 PF00381 PTS HPr component phosphorylation site CAI18_18920 PF05524 PEP-utilising enzyme, N-terminal CAI18_18920 PF00391 PEP-utilising enzyme, mobile domain CAI18_18920 PF02896 PEP-utilising enzyme, TIM barrel domain CAI18_18930 PF00571 CBS domain CAI18_18930 PF03448 MgtE intracellular N domain CAI18_18930 PF01769 Divalent cation transporter CAI18_18935 PF00756 Putative esterase CAI18_18945 PF02322 Cytochrome bd terminal oxidase subunit II CAI18_18950 PF01654 Cytochrome bd terminal oxidase subunit I CAI18_18970 PF00324 Amino acid permease CAI18_18980 PF00544 Pectate lyase CAI18_18990 PF00561 alpha/beta hydrolase fold CAI18_19000 PF00196 Bacterial regulatory proteins, luxR family CAI18_19005 PF00324 Amino acid permease CAI18_19035 PF12706 Beta-lactamase superfamily domain CAI18_19095 PF00376 MerR family regulatory protein CAI18_19095 PF09278 MerR, DNA binding CAI18_19100 PF07690 Major Facilitator Superfamily CAI18_19110 PF03738 Glutathionylspermidine synthase preATP-grasp CAI18_19135 PF04012 PspA/IM30 family CAI18_19145 PF01243 Pyridoxamine 5'-phosphate oxidase CAI18_19145 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CAI18_19150 PF01202 Shikimate kinase CAI18_19155 PF01761 3-dehydroquinate synthase CAI18_19165 PF01208 Uroporphyrinogen decarboxylase (URO-D) CAI18_19170 PF07690 Major Facilitator Superfamily CAI18_19175 PF00072 Response regulator receiver domain CAI18_19175 PF01627 Hpt domain CAI18_19175 PF00512 His Kinase A (phospho-acceptor) domain CAI18_19175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_19175 PF00672 HAMP domain CAI18_19175 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI18_19180 PF00072 Response regulator receiver domain CAI18_19180 PF00512 His Kinase A (phospho-acceptor) domain CAI18_19180 PF17149 Periplasmic sensor domain found in signal transduction proteins CAI18_19180 PF01627 Hpt domain CAI18_19180 PF00672 HAMP domain CAI18_19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_19190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_19190 PF00512 His Kinase A (phospho-acceptor) domain CAI18_19190 PF01627 Hpt domain CAI18_19190 PF00072 Response regulator receiver domain CAI18_19195 PF04264 YceI-like domain CAI18_19215 PF03315 Serine dehydratase beta chain CAI18_19215 PF03313 Serine dehydratase alpha chain CAI18_19220 PF12697 Alpha/beta hydrolase family CAI18_19230 PF00696 Amino acid kinase family CAI18_19230 PF00742 Homoserine dehydrogenase CAI18_19230 PF03447 Homoserine dehydrogenase, NAD binding domain CAI18_19235 PF01053 Cys/Met metabolism PLP-dependent enzyme CAI18_19240 PF00561 alpha/beta hydrolase fold CAI18_19245 PF01551 Peptidase family M23 CAI18_19245 PF08525 Opacity-associated protein A N-terminal motif CAI18_19245 PF01476 LysM domain CAI18_19250 PF16658 Class II release factor RF3, C-terminal domain CAI18_19250 PF00009 Elongation factor Tu GTP binding domain CAI18_19255 PF03006 Haemolysin-III related CAI18_19260 PF05170 AsmA family CAI18_19265 PF00571 CBS domain CAI18_19265 PF00478 IMP dehydrogenase / GMP reductase domain CAI18_19270 PF00535 Glycosyl transferase family 2 CAI18_19275 PF00912 Transglycosylase CAI18_19280 PF01430 Hsp33 protein CAI18_19305 PF00440 Bacterial regulatory proteins, tetR family CAI18_19310 PF00561 alpha/beta hydrolase fold CAI18_19315 PF09317 Domain of unknown function (DUF1974) CAI18_19315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CAI18_19315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CAI18_19340 PF01597 Glycine cleavage H-protein CAI18_19345 PF08669 Glycine cleavage T-protein C-terminal barrel domain CAI18_19345 PF01571 Aminomethyltransferase folate-binding domain CAI18_19365 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CAI18_19370 PF03819 MazG nucleotide pyrophosphohydrolase domain CAI18_19375 PF00459 Inositol monophosphatase family CAI18_19380 PF00293 NUDIX domain CAI18_19385 PF00202 Aminotransferase class-III CAI18_19390 PF04452 RNA methyltransferase CAI18_19395 PF02685 Glucokinase CAI18_19410 PF00704 Glycosyl hydrolases family 18 CAI18_19410 PF01476 LysM domain CAI18_19425 PF07691 PA14 domain CAI18_19425 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI18_19425 PF14310 Fibronectin type III-like domain CAI18_19425 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI18_19430 PF03412 Peptidase C39 family CAI18_19430 PF00005 ABC transporter CAI18_19430 PF00664 ABC transporter transmembrane region CAI18_19460 PF17678 Glycosyl hydrolase family 92 N-terminal domain CAI18_19460 PF07971 Glycosyl hydrolase family 92 CAI18_19465 PF01301 Glycosyl hydrolases family 35 CAI18_19500 PF03932 CutC family CAI18_19505 PF01112 Asparaginase CAI18_19520 PF13302 Acetyltransferase (GNAT) domain CAI18_19535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_19535 PF02895 Signal transducing histidine kinase, homodimeric domain CAI18_19535 PF01584 CheW-like domain CAI18_19535 PF01627 Hpt domain CAI18_19535 PF00072 Response regulator receiver domain CAI18_19540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_19540 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CAI18_19545 PF01584 CheW-like domain CAI18_19550 PF00072 Response regulator receiver domain CAI18_19555 PF00072 Response regulator receiver domain CAI18_19560 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CAI18_19560 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CAI18_19570 PF03747 ADP-ribosylglycohydrolase CAI18_19575 PF00814 Glycoprotease family CAI18_19580 PF13307 Helicase C-terminal domain CAI18_19580 PF04851 Type III restriction enzyme, res subunit CAI18_19590 PF00912 Transglycosylase CAI18_19590 PF00905 Penicillin binding protein transpeptidase domain CAI18_19590 PF14814 Bifunctional transglycosylase second domain CAI18_19595 PF00535 Glycosyl transferase family 2 CAI18_19620 PF08042 PqqA family CAI18_19625 PF12706 Beta-lactamase superfamily domain CAI18_19630 PF03070 TENA/THI-4/PQQC family CAI18_19635 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CAI18_19640 PF13186 Iron-sulfur cluster-binding domain CAI18_19640 PF04055 Radical SAM superfamily CAI18_19665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CAI18_19665 PF00271 Helicase conserved C-terminal domain CAI18_19665 PF04408 Helicase associated domain (HA2) CAI18_19665 PF11898 Domain of unknown function (DUF3418) CAI18_19665 PF00270 DEAD/DEAH box helicase CAI18_19670 PF00210 Ferritin-like domain CAI18_19680 PF16124 RecQ zinc-binding CAI18_19680 PF00271 Helicase conserved C-terminal domain CAI18_19680 PF00270 DEAD/DEAH box helicase CAI18_19680 PF09382 RQC domain CAI18_19680 PF00570 HRDC domain CAI18_19715 PF02203 Tar ligand binding domain homologue CAI18_19715 PF00672 HAMP domain CAI18_19715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_19735 PF13581 Histidine kinase-like ATPase domain CAI18_19735 PF07536 HWE histidine kinase CAI18_19735 PF13426 PAS domain CAI18_19740 PF06508 Queuosine biosynthesis protein QueC CAI18_19750 PF04055 Radical SAM superfamily CAI18_19760 PF00691 OmpA family CAI18_19765 PF04052 TolB amino-terminal domain CAI18_19765 PF07676 WD40-like Beta Propeller Repeat CAI18_19775 PF02472 Biopolymer transport protein ExbD/TolR CAI18_19780 PF01618 MotA/TolQ/ExbB proton channel family CAI18_19785 PF03061 Thioesterase superfamily CAI18_19790 PF05491 RuvB C-terminal winged helix domain CAI18_19790 PF05496 Holliday junction DNA helicase RuvB P-loop domain CAI18_19790 PF17864 RuvB AAA lid domain CAI18_19800 PF02705 K+ potassium transporter CAI18_19805 PF01330 RuvA N terminal domain CAI18_19805 PF07499 RuvA, C-terminal domain CAI18_19810 PF02075 Crossover junction endodeoxyribonuclease RuvC CAI18_19815 PF01709 Transcriptional regulator CAI18_19830 PF02938 GAD domain CAI18_19830 PF00152 tRNA synthetases class II (D, K and N) CAI18_19830 PF01336 OB-fold nucleic acid binding domain CAI18_19845 PF07690 Major Facilitator Superfamily CAI18_19860 PF04185 Phosphoesterase family CAI18_19860 PF05506 Domain of unknown function (DUF756) CAI18_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_19880 PF03466 LysR substrate binding domain CAI18_19890 PF12848 ABC transporter CAI18_19890 PF00005 ABC transporter CAI18_19895 PF07715 TonB-dependent Receptor Plug Domain CAI18_19895 PF00593 TonB dependent receptor CAI18_19915 PF07715 TonB-dependent Receptor Plug Domain CAI18_19915 PF00593 TonB dependent receptor CAI18_19920 PF00067 Cytochrome P450 CAI18_19930 PF00999 Sodium/hydrogen exchanger family CAI18_19930 PF02254 TrkA-N domain CAI18_19955 PF00593 TonB dependent receptor CAI18_19955 PF07660 Secretin and TonB N terminus short domain CAI18_19955 PF07715 TonB-dependent Receptor Plug Domain CAI18_19965 PF06276 Ferric iron reductase FhuF-like transporter CAI18_19965 PF04183 IucA / IucC family CAI18_19970 PF07690 Major Facilitator Superfamily CAI18_19980 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CAI18_19980 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CAI18_20010 PF02277 Phosphoribosyltransferase CAI18_20015 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CAI18_20020 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CAI18_20020 PF07685 CobB/CobQ-like glutamine amidotransferase domain CAI18_20025 PF00155 Aminotransferase class I and II CAI18_20035 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CAI18_20035 PF12557 Cob(I)alamin adenosyltransferase N terminal CAI18_20050 PF07715 TonB-dependent Receptor Plug Domain CAI18_20050 PF00593 TonB dependent receptor CAI18_20055 PF02861 Clp amino terminal domain, pathogenicity island component CAI18_20055 PF10431 C-terminal, D2-small domain, of ClpB protein CAI18_20055 PF00004 ATPase family associated with various cellular activities (AAA) CAI18_20055 PF17871 AAA lid domain CAI18_20055 PF07724 AAA domain (Cdc48 subfamily) CAI18_20060 PF00005 ABC transporter CAI18_20065 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_20070 PF09084 NMT1/THI5 like CAI18_20075 PF00248 Aldo/keto reductase family CAI18_20080 PF00296 Luciferase-like monooxygenase CAI18_20085 PF00593 TonB dependent receptor CAI18_20085 PF07715 TonB-dependent Receptor Plug Domain CAI18_20095 PF01541 GIY-YIG catalytic domain CAI18_20130 PF07715 TonB-dependent Receptor Plug Domain CAI18_20130 PF00593 TonB dependent receptor CAI18_20140 PF02358 Trehalose-phosphatase CAI18_20145 PF00723 Glycosyl hydrolases family 15 CAI18_20150 PF00982 Glycosyltransferase family 20 CAI18_20155 PF01011 PQQ enzyme repeat CAI18_20165 PF02203 Tar ligand binding domain homologue CAI18_20165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_20165 PF00672 HAMP domain CAI18_20170 PF04134 Protein of unknown function, DUF393 CAI18_20185 PF00849 RNA pseudouridylate synthase CAI18_20190 PF13525 Outer membrane lipoprotein CAI18_20200 PF00795 Carbon-nitrogen hydrolase CAI18_20200 PF02540 NAD synthase CAI18_20210 PF00549 CoA-ligase CAI18_20210 PF02629 CoA binding domain CAI18_20215 PF00549 CoA-ligase CAI18_20215 PF08442 ATP-grasp domain CAI18_20220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_20220 PF00512 His Kinase A (phospho-acceptor) domain CAI18_20225 PF00072 Response regulator receiver domain CAI18_20225 PF00158 Sigma-54 interaction domain CAI18_20225 PF02954 Bacterial regulatory protein, Fis family CAI18_20235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CAI18_20235 PF00437 Type II/IV secretion system protein CAI18_20245 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CAI18_20245 PF00437 Type II/IV secretion system protein CAI18_20250 PF00114 Pilin (bacterial filament) CAI18_20250 PF07963 Prokaryotic N-terminal methylation motif CAI18_20255 PF07963 Prokaryotic N-terminal methylation motif CAI18_20255 PF00114 Pilin (bacterial filament) CAI18_20260 PF00482 Type II secretion system (T2SS), protein F CAI18_20265 PF06750 Bacterial Peptidase A24 N-terminal domain CAI18_20265 PF01478 Type IV leader peptidase family CAI18_20270 PF01121 Dephospho-CoA kinase CAI18_20285 PF00664 ABC transporter transmembrane region CAI18_20285 PF00005 ABC transporter CAI18_20285 PF03412 Peptidase C39 family CAI18_20290 PF00155 Aminotransferase class I and II CAI18_20320 PF01522 Polysaccharide deacetylase CAI18_20325 PF00462 Glutaredoxin CAI18_20340 PF01979 Amidohydrolase family CAI18_20345 PF01979 Amidohydrolase family CAI18_20380 PF02645 Uncharacterised protein, DegV family COG1307 CAI18_20385 PF01327 Polypeptide deformylase CAI18_20415 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CAI18_20420 PF01270 Glycosyl hydrolases family 8 CAI18_20425 PF03170 Bacterial cellulose synthase subunit CAI18_20430 PF03552 Cellulose synthase CAI18_20430 PF00535 Glycosyl transferase family 2 CAI18_20430 PF07238 PilZ domain CAI18_20445 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CAI18_20445 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CAI18_20500 PF07715 TonB-dependent Receptor Plug Domain CAI18_20500 PF00593 TonB dependent receptor CAI18_20510 PF00392 Bacterial regulatory proteins, gntR family CAI18_20510 PF07702 UTRA domain CAI18_20525 PF03958 Bacterial type II/III secretion system short domain CAI18_20525 PF00263 Bacterial type II and III secretion system protein CAI18_20535 PF10741 Type II secretion system (T2SS), protein M subtype b CAI18_20540 PF05137 Fimbrial assembly protein (PilN) CAI18_20545 PF03934 Type II secretion system (T2SS), protein K CAI18_20555 PF07963 Prokaryotic N-terminal methylation motif CAI18_20560 PF12019 Type II transport protein GspH CAI18_20565 PF08334 Type II secretion system (T2SS), protein G CAI18_20570 PF00482 Type II secretion system (T2SS), protein F CAI18_20580 PF00437 Type II/IV secretion system protein CAI18_20580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CAI18_20585 PF04151 Bacterial pre-peptidase C-terminal domain CAI18_20585 PF00082 Subtilase family CAI18_20590 PF13018 Extended Signal Peptide of Type V secretion system CAI18_20590 PF05662 Coiled stalk of trimeric autotransporter adhesin CAI18_20590 PF05658 Head domain of trimeric autotransporter adhesin CAI18_20590 PF03895 YadA-like membrane anchor domain CAI18_20595 PF00082 Subtilase family CAI18_20595 PF04151 Bacterial pre-peptidase C-terminal domain CAI18_20600 PF05662 Coiled stalk of trimeric autotransporter adhesin CAI18_20600 PF05658 Head domain of trimeric autotransporter adhesin CAI18_20600 PF03895 YadA-like membrane anchor domain CAI18_20600 PF13018 Extended Signal Peptide of Type V secretion system CAI18_20605 PF02769 AIR synthase related protein, C-terminal domain CAI18_20605 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CAI18_20605 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CAI18_20615 PF10411 Disulfide bond isomerase protein N-terminus CAI18_20615 PF13098 Thioredoxin-like domain CAI18_20625 PF02899 Phage integrase, N-terminal SAM-like domain CAI18_20625 PF00589 Phage integrase family CAI18_20640 PF03739 Lipopolysaccharide export system permease LptF/LptG CAI18_20650 PF02789 Cytosol aminopeptidase family, N-terminal domain CAI18_20650 PF00883 Cytosol aminopeptidase family, catalytic domain CAI18_20665 PF00133 tRNA synthetases class I (I, L, M and V) CAI18_20665 PF08264 Anticodon-binding domain of tRNA CAI18_20665 PF10458 Valyl tRNA synthetase tRNA binding arm CAI18_20680 PF00593 TonB dependent receptor CAI18_20680 PF07715 TonB-dependent Receptor Plug Domain CAI18_20685 PF01464 Transglycosylase SLT domain CAI18_20690 PF00544 Pectate lyase CAI18_20705 PF01066 CDP-alcohol phosphatidyltransferase CAI18_20715 PF03129 Anticodon binding domain CAI18_20715 PF04073 Aminoacyl-tRNA editing domain CAI18_20715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CAI18_20720 PF00816 H-NS histone family CAI18_20730 PF02405 Permease MlaE CAI18_20735 PF00005 ABC transporter CAI18_20740 PF03886 ABC-type transport auxiliary lipoprotein component CAI18_20740 PF02470 MlaD protein CAI18_20760 PF05045 Rhamnan synthesis protein F CAI18_20760 PF14307 Glycosyltransferase WbsX CAI18_20765 PF01144 Coenzyme A transferase CAI18_20770 PF01144 Coenzyme A transferase CAI18_20775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CAI18_20775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CAI18_20775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CAI18_20775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CAI18_20780 PF01050 Mannose-6-phosphate isomerase CAI18_20780 PF00483 Nucleotidyl transferase CAI18_20785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CAI18_20785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CAI18_20785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CAI18_20790 PF04321 RmlD substrate binding domain CAI18_20795 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CAI18_20800 PF00483 Nucleotidyl transferase CAI18_20805 PF16363 GDP-mannose 4,6 dehydratase CAI18_20810 PF01012 Electron transfer flavoprotein domain CAI18_20815 PF00766 Electron transfer flavoprotein FAD-binding domain CAI18_20815 PF01012 Electron transfer flavoprotein domain CAI18_20825 PF01040 UbiA prenyltransferase family CAI18_20830 PF04030 D-arabinono-1,4-lactone oxidase CAI18_20830 PF01565 FAD binding domain CAI18_20835 PF00106 short chain dehydrogenase CAI18_20845 PF01370 NAD dependent epimerase/dehydratase family CAI18_20880 PF00535 Glycosyl transferase family 2 CAI18_20890 PF14524 Wzt C-terminal domain CAI18_20890 PF00005 ABC transporter CAI18_20900 PF01053 Cys/Met metabolism PLP-dependent enzyme CAI18_20905 PF00291 Pyridoxal-phosphate dependent enzyme CAI18_20905 PF00571 CBS domain CAI18_20925 PF00437 Type II/IV secretion system protein CAI18_20930 PF14497 Glutathione S-transferase, C-terminal domain CAI18_20930 PF02798 Glutathione S-transferase, N-terminal domain CAI18_20945 PF00271 Helicase conserved C-terminal domain CAI18_20945 PF00270 DEAD/DEAH box helicase CAI18_20955 PF07715 TonB-dependent Receptor Plug Domain CAI18_20955 PF00593 TonB dependent receptor CAI18_20965 PF01242 6-pyruvoyl tetrahydropterin synthase CAI18_20985 PF13185 GAF domain CAI18_20995 PF00756 Putative esterase CAI18_21000 PF07715 TonB-dependent Receptor Plug Domain CAI18_21000 PF00593 TonB dependent receptor CAI18_21005 PF13419 Haloacid dehalogenase-like hydrolase CAI18_21010 PF11799 impB/mucB/samB family C-terminal domain CAI18_21010 PF00817 impB/mucB/samB family CAI18_21015 PF07977 FabA-like domain CAI18_21020 PF02801 Beta-ketoacyl synthase, C-terminal domain CAI18_21020 PF00109 Beta-ketoacyl synthase, N-terminal domain CAI18_21030 PF01432 Peptidase family M3 CAI18_21045 PF07732 Multicopper oxidase CAI18_21045 PF07731 Multicopper oxidase CAI18_21045 PF00394 Multicopper oxidase CAI18_21050 PF05275 Copper resistance protein B precursor (CopB) CAI18_21055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CAI18_21085 PF01380 SIS domain CAI18_21090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_21095 PF02687 FtsX-like permease family CAI18_21095 PF12704 MacB-like periplasmic core domain CAI18_21095 PF00005 ABC transporter CAI18_21100 PF12704 MacB-like periplasmic core domain CAI18_21100 PF02687 FtsX-like permease family CAI18_21105 PF02687 FtsX-like permease family CAI18_21105 PF12704 MacB-like periplasmic core domain CAI18_21115 PF00158 Sigma-54 interaction domain CAI18_21115 PF00072 Response regulator receiver domain CAI18_21115 PF02954 Bacterial regulatory protein, Fis family CAI18_21120 PF00512 His Kinase A (phospho-acceptor) domain CAI18_21120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_21125 PF14602 Hexapeptide repeat of succinyl-transferase CAI18_21125 PF12804 MobA-like NTP transferase domain CAI18_21125 PF00132 Bacterial transferase hexapeptide (six repeats) CAI18_21140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CAI18_21140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CAI18_21145 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI18_21145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI18_21150 PF00231 ATP synthase CAI18_21155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI18_21155 PF02874 ATP synthase alpha/beta family, beta-barrel domain CAI18_21155 PF00306 ATP synthase alpha/beta chain, C terminal domain CAI18_21160 PF00213 ATP synthase delta (OSCP) subunit CAI18_21165 PF00430 ATP synthase B/B' CF(0) CAI18_21170 PF00137 ATP synthase subunit C CAI18_21175 PF00119 ATP synthase A chain CAI18_21195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CAI18_21195 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_21205 PF02817 e3 binding domain CAI18_21205 PF00364 Biotin-requiring enzyme CAI18_21205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CAI18_21245 PF03180 NLPA lipoprotein CAI18_21250 PF00528 Binding-protein-dependent transport system inner membrane component CAI18_21255 PF09383 NIL domain CAI18_21255 PF00005 ABC transporter CAI18_21260 PF00892 EamA-like transporter family CAI18_21265 PF04461 Protein of unknown function (DUF520) CAI18_21275 PF01627 Hpt domain CAI18_21275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_21275 PF00512 His Kinase A (phospho-acceptor) domain CAI18_21275 PF18415 Histidine kinase receptor ArcB trans-membrane domain CAI18_21275 PF00989 PAS fold CAI18_21275 PF00072 Response regulator receiver domain CAI18_21300 PF13419 Haloacid dehalogenase-like hydrolase CAI18_21305 PF01479 S4 domain CAI18_21305 PF00849 RNA pseudouridylate synthase CAI18_21310 PF08468 Methyltransferase small domain N-terminal CAI18_21310 PF05175 Methyltransferase small domain CAI18_21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_21330 PF00512 His Kinase A (phospho-acceptor) domain CAI18_21330 PF00989 PAS fold CAI18_21350 PF00842 Alanine racemase, C-terminal domain CAI18_21350 PF01168 Alanine racemase, N-terminal domain CAI18_21355 PF01266 FAD dependent oxidoreductase CAI18_21360 PF01037 Lrp/AsnC ligand binding domain CAI18_21380 PF01618 MotA/TolQ/ExbB proton channel family CAI18_21385 PF00691 OmpA family CAI18_21385 PF13677 Membrane MotB of proton-channel complex MotA/MotB CAI18_21415 PF01061 ABC-2 type transporter CAI18_21420 PF00005 ABC transporter CAI18_21425 PF00999 Sodium/hydrogen exchanger family CAI18_21435 PF02469 Fasciclin domain CAI18_21440 PF03167 Uracil DNA glycosylase superfamily CAI18_21450 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CAI18_21465 PF03358 NADPH-dependent FMN reductase CAI18_21470 PF00248 Aldo/keto reductase family CAI18_21480 PF00535 Glycosyl transferase family 2 CAI18_21485 PF05649 Peptidase family M13 CAI18_21485 PF01431 Peptidase family M13 CAI18_21505 PF13520 Amino acid permease CAI18_21515 PF00072 Response regulator receiver domain CAI18_21515 PF04397 LytTr DNA-binding domain CAI18_21520 PF02743 Cache domain CAI18_21520 PF00672 HAMP domain CAI18_21520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CAI18_21520 PF06580 Histidine kinase CAI18_21545 PF05974 Domain of unknown function (DUF892) CAI18_21550 PF05067 Manganese containing catalase CAI18_21570 PF08448 PAS fold CAI18_21570 PF01739 CheR methyltransferase, SAM binding domain CAI18_21570 PF01339 CheB methylesterase CAI18_21570 PF03705 CheR methyltransferase, all-alpha domain CAI18_21585 PF00158 Sigma-54 interaction domain CAI18_21585 PF02954 Bacterial regulatory protein, Fis family CAI18_21585 PF00072 Response regulator receiver domain CAI18_21600 PF01654 Cytochrome bd terminal oxidase subunit I CAI18_21605 PF02322 Cytochrome bd terminal oxidase subunit II CAI18_21630 PF16363 GDP-mannose 4,6 dehydratase CAI18_21640 PF03275 UDP-galactopyranose mutase CAI18_21660 PF00664 ABC transporter transmembrane region CAI18_21660 PF00005 ABC transporter CAI18_21685 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_21685 PF13823 Alcohol dehydrogenase GroES-associated CAI18_21685 PF00107 Zinc-binding dehydrogenase CAI18_21745 PF00005 ABC transporter CAI18_21755 PF03466 LysR substrate binding domain CAI18_21755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_21760 PF01042 Endoribonuclease L-PSP CAI18_21775 PF02203 Tar ligand binding domain homologue CAI18_21775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CAI18_21775 PF00672 HAMP domain CAI18_21790 PF03466 LysR substrate binding domain CAI18_21790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_21795 PF02525 Flavodoxin-like fold CAI18_21870 PF04539 Sigma-70 region 3 CAI18_21870 PF00140 Sigma-70 factor, region 1.2 CAI18_21870 PF04546 Sigma-70, non-essential region CAI18_21870 PF04542 Sigma-70 region 2 CAI18_21870 PF04545 Sigma-70, region 4 CAI18_21870 PF03979 Sigma-70 factor, region 1.1 CAI18_21875 PF02580 D-Tyr-tRNA(Tyr) deacylase CAI18_21880 PF03279 Bacterial lipid A biosynthesis acyltransferase CAI18_21900 PF00925 GTP cyclohydrolase II CAI18_21920 PF00535 Glycosyl transferase family 2 CAI18_21935 PF01189 16S rRNA methyltransferase RsmB/F CAI18_21935 PF01029 NusB family CAI18_21940 PF00551 Formyl transferase CAI18_21940 PF02911 Formyl transferase, C-terminal domain CAI18_21945 PF01327 Polypeptide deformylase CAI18_21950 PF01476 LysM domain CAI18_21955 PF17782 DprA winged helix domain CAI18_21955 PF02481 DNA recombination-mediator protein A CAI18_21960 PF04361 Protein of unknown function (DUF494) CAI18_21965 PF07963 Prokaryotic N-terminal methylation motif CAI18_21965 PF00114 Pilin (bacterial filament) CAI18_21975 PF01131 DNA topoisomerase CAI18_21975 PF01751 Toprim domain CAI18_21975 PF13368 Topoisomerase C-terminal repeat CAI18_21980 PF01300 Telomere recombination CAI18_22010 PF01343 Peptidase family S49 CAI18_22015 PF01554 MatE CAI18_22035 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CAI18_22035 PF18074 Primosomal protein N C-terminal domain CAI18_22035 PF17764 3′ DNA-binding domain (3′BD) CAI18_22035 PF00271 Helicase conserved C-terminal domain CAI18_22035 PF00270 DEAD/DEAH box helicase CAI18_22040 PF00043 Glutathione S-transferase, C-terminal domain CAI18_22040 PF13417 Glutathione S-transferase, N-terminal domain CAI18_22055 PF07992 Pyridine nucleotide-disulphide oxidoreductase CAI18_22065 PF04542 Sigma-70 region 2 CAI18_22065 PF04545 Sigma-70, region 4 CAI18_22070 PF03167 Uracil DNA glycosylase superfamily CAI18_22075 PF00072 Response regulator receiver domain CAI18_22080 PF18075 FtsX extracellular domain CAI18_22085 PF00005 ABC transporter CAI18_22090 PF12300 ATP-dependent RNA helicase RhlB CAI18_22090 PF00271 Helicase conserved C-terminal domain CAI18_22090 PF00270 DEAD/DEAH box helicase CAI18_22095 PF00085 Thioredoxin CAI18_22100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CAI18_22100 PF07498 Rho termination factor, N-terminal domain CAI18_22100 PF07497 Rho termination factor, RNA-binding domain CAI18_22105 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CAI18_22110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_22110 PF03466 LysR substrate binding domain CAI18_22120 PF03971 Monomeric isocitrate dehydrogenase CAI18_22135 PF09704 CRISPR-associated protein (Cas_Cas5) CAI18_22155 PF01867 CRISPR associated protein Cas1 CAI18_22160 PF09827 CRISPR associated protein Cas2 CAI18_22170 PF01476 LysM domain CAI18_22170 PF04972 BON domain CAI18_22175 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CAI18_22175 PF14489 QueF-like protein CAI18_22180 PF01546 Peptidase family M20/M25/M40 CAI18_22180 PF07687 Peptidase dimerisation domain CAI18_22185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_22190 PF00873 AcrB/AcrD/AcrF family CAI18_22195 PF00873 AcrB/AcrD/AcrF family CAI18_22200 PF07063 Domain of unknown function (DUF1338) CAI18_22250 PF01427 D-ala-D-ala dipeptidase CAI18_22255 PF01510 N-acetylmuramoyl-L-alanine amidase CAI18_22265 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CAI18_22265 PF13378 Enolase C-terminal domain-like CAI18_22275 PF13520 Amino acid permease CAI18_22290 PF05360 yiaA/B two helix domain CAI18_22295 PF07995 Glucose / Sorbosone dehydrogenase CAI18_22300 PF14310 Fibronectin type III-like domain CAI18_22300 PF01915 Glycosyl hydrolase family 3 C-terminal domain CAI18_22300 PF00933 Glycosyl hydrolase family 3 N terminal domain CAI18_22305 PF02152 Dihydroneopterin aldolase CAI18_22310 PF00814 Glycoprotease family CAI18_22315 PF01165 Ribosomal protein S21 CAI18_22320 PF09424 Yqey-like protein CAI18_22330 PF03631 Virulence factor BrkB CAI18_22335 PF10410 DnaB-helicase binding domain of primase CAI18_22335 PF08278 DNA primase DnaG DnaB-binding CAI18_22335 PF08275 DNA primase catalytic core, N-terminal domain CAI18_22335 PF01807 CHC2 zinc finger CAI18_22340 PF13593 SBF-like CPA transporter family (DUF4137) CAI18_22350 PF01040 UbiA prenyltransferase family CAI18_22375 PF00510 Cytochrome c oxidase subunit III CAI18_22380 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CAI18_22390 PF00115 Cytochrome C and Quinol oxidase polypeptide I CAI18_22395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CAI18_22395 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CAI18_22405 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI18_22405 PF00171 Aldehyde dehydrogenase family CAI18_22405 PF01619 Proline dehydrogenase CAI18_22405 PF14850 DNA-binding domain of Proline dehydrogenase CAI18_22435 PF03594 Benzoate membrane transport protein CAI18_22440 PF01590 GAF domain CAI18_22440 PF13426 PAS domain CAI18_22440 PF08446 PAS fold CAI18_22440 PF00360 Phytochrome region CAI18_22445 PF01126 Heme oxygenase CAI18_22455 PF01263 Aldose 1-epimerase CAI18_22465 PF02810 SEC-C motif CAI18_22470 PF01925 Sulfite exporter TauE/SafE CAI18_22490 PF01227 GTP cyclohydrolase I CAI18_22500 PF07869 Protein of unknown function (DUF1656) CAI18_22505 PF00529 HlyD membrane-fusion protein of T1SS CAI18_22505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CAI18_22510 PF02321 Outer membrane efflux protein CAI18_22515 PF04632 Fusaric acid resistance protein family CAI18_22520 PF00083 Sugar (and other) transporter CAI18_22525 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family CAI18_22530 PF13091 PLD-like domain CAI18_22530 PF13396 Phospholipase_D-nuclease N-terminal CAI18_22555 PF01850 PIN domain CAI18_22625 PF00849 RNA pseudouridylate synthase CAI18_22660 PF00364 Biotin-requiring enzyme CAI18_22660 PF00289 Biotin carboxylase, N-terminal domain CAI18_22660 PF02785 Biotin carboxylase C-terminal domain CAI18_22660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CAI18_22665 PF01425 Amidase CAI18_22700 PF05598 Transposase domain (DUF772) CAI18_22700 PF01609 Transposase DDE domain CAI18_22715 PF13538 UvrD-like helicase C-terminal domain CAI18_22720 PF00580 UvrD/REP helicase N-terminal domain CAI18_22720 PF12705 PD-(D/E)XK nuclease superfamily CAI18_22720 PF13361 UvrD-like helicase C-terminal domain CAI18_22725 PF17946 RecC C-terminal domain CAI18_22740 PF00005 ABC transporter CAI18_22745 PF02405 Permease MlaE CAI18_22750 PF02470 MlaD protein CAI18_22755 PF05494 MlaC protein CAI18_22765 PF04333 MlaA lipoprotein CAI18_22775 PF00255 Glutathione peroxidase CAI18_22785 PF02646 RmuC family CAI18_22790 PF00107 Zinc-binding dehydrogenase CAI18_22790 PF08240 Alcohol dehydrogenase GroES-like domain CAI18_22795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CAI18_22795 PF03466 LysR substrate binding domain CAI18_22810 PF13417 Glutathione S-transferase, N-terminal domain CAI18_22810 PF00043 Glutathione S-transferase, C-terminal domain CAI18_22820 PF13520 Amino acid permease CAI18_22835 PF10947 Protein of unknown function (DUF2628) CAI18_22865 PF10672 S-adenosylmethionine-dependent methyltransferase CAI18_22865 PF17785 PUA-like domain CAI18_22875 PF03741 Integral membrane protein TerC family CAI18_22885 PF01694 Rhomboid family CAI18_22890 PF03009 Glycerophosphoryl diester phosphodiesterase family CAI18_22900 PF01569 PAP2 superfamily CAI18_22905 PF10396 GTP-binding protein TrmE N-terminus CAI18_22905 PF12631 MnmE helical domain CAI18_22905 PF01926 50S ribosome-binding GTPase CAI18_22910 PF01522 Polysaccharide deacetylase CAI18_22915 PF14849 YidC periplasmic domain CAI18_22915 PF02096 60Kd inner membrane protein CAI18_22920 PF00825 Ribonuclease P CAI18_22925 PF00468 Ribosomal protein L34 CAI18_22930 PF01443 Viral (Superfamily 1) RNA helicase CAI18_22930 PF17841 BID domain of Bartonella effector protein (Bep) CAI18_22930 PF03389 MobA/MobL family CAI18_22935 PF07820 TraC-like protein CAI18_22940 PF06412 Conjugal transfer protein TraD CAI18_22945 PF02534 Type IV secretory system Conjugative DNA transfer CAI18_22955 PF11740 Plasmid replication region DNA-binding N-term CAI18_22980 PF02810 SEC-C motif CAI18_22980 PF03695 Uncharacterised protein family (UPF0149) CAI18_22990 PF01850 PIN domain CAI18_23115 PF07015 VirC1 protein CAI18_23175 PF08751 TrwC relaxase CAI18_23175 PF07057 DNA helicase TraI CAI18_23175 PF18272 single-stranded DNA binding TraI N-terminal subdomain CAI18_23175 PF18340 DNA relaxase TraI 2B/2B-like domain CAI18_23200 PF01464 Transglycosylase SLT domain CAI18_23205 PF00437 Type II/IV secretion system protein CAI18_23210 PF03743 Bacterial conjugation TrbI-like protein CAI18_23215 PF03524 Conjugal transfer protein CAI18_23225 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CAI18_23280 PF03377 TAL effector repeat CAI18_23325 PF13614 AAA domain CAI18_23410 PF05394 Avirulence protein CAI18_23430 PF03695 Uncharacterised protein family (UPF0149) CAI18_23430 PF02810 SEC-C motif CAI18_23445 PF00171 Aldehyde dehydrogenase family CAI18_23445 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI18_23445 PF14850 DNA-binding domain of Proline dehydrogenase CAI18_23445 PF01619 Proline dehydrogenase CAI18_23510 PF09722 Protein of unknown function (DUF2384) CAI18_23510 PF01936 NYN domain CAI18_23555 PF00239 Resolvase, N terminal domain CAI18_23555 PF02796 Helix-turn-helix domain of resolvase CAI18_23570 PF13614 AAA domain CAI18_23600 PF13700 Domain of unknown function (DUF4158) CAI18_23600 PF01526 Tn3 transposase DDE domain CAI18_23620 PF00145 C-5 cytosine-specific DNA methylase CAI18_23645 PF14850 DNA-binding domain of Proline dehydrogenase CAI18_23645 PF01619 Proline dehydrogenase CAI18_23645 PF00171 Aldehyde dehydrogenase family CAI18_23645 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CAI18_23685 PF00595 PDZ domain CAI18_23685 PF13180 PDZ domain