locus-tag class description DOO79_00020 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DOO79_00050 PF01040 UbiA prenyltransferase family DOO79_00055 PF01565 FAD binding domain DOO79_00055 PF04030 D-arabinono-1,4-lactone oxidase DOO79_00060 PF00106 short chain dehydrogenase DOO79_00070 PF01370 NAD dependent epimerase/dehydratase family DOO79_00105 PF00535 Glycosyl transferase family 2 DOO79_00115 PF00005 ABC transporter DOO79_00115 PF14524 Wzt C-terminal domain DOO79_00125 PF01053 Cys/Met metabolism PLP-dependent enzyme DOO79_00130 PF00291 Pyridoxal-phosphate dependent enzyme DOO79_00130 PF00571 CBS domain DOO79_00150 PF00437 Type II/IV secretion system protein DOO79_00155 PF02798 Glutathione S-transferase, N-terminal domain DOO79_00155 PF14497 Glutathione S-transferase, C-terminal domain DOO79_00170 PF00270 DEAD/DEAH box helicase DOO79_00170 PF00271 Helicase conserved C-terminal domain DOO79_00180 PF07715 TonB-dependent Receptor Plug Domain DOO79_00180 PF00593 TonB dependent receptor DOO79_00190 PF01242 6-pyruvoyl tetrahydropterin synthase DOO79_00210 PF13185 GAF domain DOO79_00220 PF00756 Putative esterase DOO79_00225 PF00593 TonB dependent receptor DOO79_00225 PF07715 TonB-dependent Receptor Plug Domain DOO79_00230 PF13419 Haloacid dehalogenase-like hydrolase DOO79_00235 PF00817 impB/mucB/samB family DOO79_00235 PF11799 impB/mucB/samB family C-terminal domain DOO79_00240 PF07977 FabA-like domain DOO79_00245 PF02801 Beta-ketoacyl synthase, C-terminal domain DOO79_00245 PF00109 Beta-ketoacyl synthase, N-terminal domain DOO79_00255 PF01432 Peptidase family M3 DOO79_00270 PF07732 Multicopper oxidase DOO79_00270 PF07731 Multicopper oxidase DOO79_00270 PF00394 Multicopper oxidase DOO79_00275 PF05275 Copper resistance protein B precursor (CopB) DOO79_00280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOO79_00310 PF01380 SIS domain DOO79_00315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_00320 PF12704 MacB-like periplasmic core domain DOO79_00320 PF00005 ABC transporter DOO79_00320 PF02687 FtsX-like permease family DOO79_00325 PF02687 FtsX-like permease family DOO79_00325 PF12704 MacB-like periplasmic core domain DOO79_00330 PF02687 FtsX-like permease family DOO79_00330 PF12704 MacB-like periplasmic core domain DOO79_00340 PF02954 Bacterial regulatory protein, Fis family DOO79_00340 PF00072 Response regulator receiver domain DOO79_00340 PF00158 Sigma-54 interaction domain DOO79_00345 PF00512 His Kinase A (phospho-acceptor) domain DOO79_00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_00350 PF14602 Hexapeptide repeat of succinyl-transferase DOO79_00350 PF12804 MobA-like NTP transferase domain DOO79_00350 PF00132 Bacterial transferase hexapeptide (six repeats) DOO79_00365 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DOO79_00365 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DOO79_00370 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOO79_00370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOO79_00375 PF00231 ATP synthase DOO79_00380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOO79_00380 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOO79_00380 PF00306 ATP synthase alpha/beta chain, C terminal domain DOO79_00385 PF00213 ATP synthase delta (OSCP) subunit DOO79_00390 PF00430 ATP synthase B/B' CF(0) DOO79_00395 PF00137 ATP synthase subunit C DOO79_00400 PF00119 ATP synthase A chain DOO79_00420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOO79_00420 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_00430 PF00364 Biotin-requiring enzyme DOO79_00430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOO79_00430 PF02817 e3 binding domain DOO79_00470 PF03180 NLPA lipoprotein DOO79_00475 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_00480 PF00005 ABC transporter DOO79_00480 PF09383 NIL domain DOO79_00485 PF00892 EamA-like transporter family DOO79_00490 PF04461 Protein of unknown function (DUF520) DOO79_00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_00500 PF00512 His Kinase A (phospho-acceptor) domain DOO79_00500 PF18415 Histidine kinase receptor ArcB trans-membrane domain DOO79_00500 PF00989 PAS fold DOO79_00500 PF00072 Response regulator receiver domain DOO79_00500 PF01627 Hpt domain DOO79_00525 PF13419 Haloacid dehalogenase-like hydrolase DOO79_00530 PF00849 RNA pseudouridylate synthase DOO79_00530 PF01479 S4 domain DOO79_00535 PF05175 Methyltransferase small domain DOO79_00535 PF08468 Methyltransferase small domain N-terminal DOO79_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_00555 PF00512 His Kinase A (phospho-acceptor) domain DOO79_00555 PF00989 PAS fold DOO79_00575 PF00842 Alanine racemase, C-terminal domain DOO79_00575 PF01168 Alanine racemase, N-terminal domain DOO79_00580 PF01266 FAD dependent oxidoreductase DOO79_00585 PF01037 Lrp/AsnC ligand binding domain DOO79_00605 PF01618 MotA/TolQ/ExbB proton channel family DOO79_00610 PF13677 Membrane MotB of proton-channel complex MotA/MotB DOO79_00610 PF00691 OmpA family DOO79_00645 PF01061 ABC-2 type transporter DOO79_00655 PF00999 Sodium/hydrogen exchanger family DOO79_00665 PF02469 Fasciclin domain DOO79_00670 PF03167 Uracil DNA glycosylase superfamily DOO79_00680 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOO79_00695 PF03358 NADPH-dependent FMN reductase DOO79_00700 PF00248 Aldo/keto reductase family DOO79_00710 PF00535 Glycosyl transferase family 2 DOO79_00715 PF01431 Peptidase family M13 DOO79_00715 PF05649 Peptidase family M13 DOO79_00735 PF13520 Amino acid permease DOO79_00745 PF00072 Response regulator receiver domain DOO79_00745 PF04397 LytTr DNA-binding domain DOO79_00750 PF02743 Cache domain DOO79_00750 PF06580 Histidine kinase DOO79_00750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_00750 PF00672 HAMP domain DOO79_00775 PF05974 Domain of unknown function (DUF892) DOO79_00780 PF05067 Manganese containing catalase DOO79_00800 PF01339 CheB methylesterase DOO79_00800 PF08448 PAS fold DOO79_00800 PF03705 CheR methyltransferase, all-alpha domain DOO79_00800 PF01739 CheR methyltransferase, SAM binding domain DOO79_00815 PF00158 Sigma-54 interaction domain DOO79_00815 PF00072 Response regulator receiver domain DOO79_00815 PF02954 Bacterial regulatory protein, Fis family DOO79_00830 PF01654 Cytochrome bd terminal oxidase subunit I DOO79_00835 PF02322 Cytochrome bd terminal oxidase subunit II DOO79_00860 PF16363 GDP-mannose 4,6 dehydratase DOO79_00870 PF03275 UDP-galactopyranose mutase DOO79_00890 PF00005 ABC transporter DOO79_00890 PF00664 ABC transporter transmembrane region DOO79_00915 PF13823 Alcohol dehydrogenase GroES-associated DOO79_00915 PF00107 Zinc-binding dehydrogenase DOO79_00915 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_00960 PF07715 TonB-dependent Receptor Plug Domain DOO79_00960 PF00593 TonB dependent receptor DOO79_00975 PF00005 ABC transporter DOO79_00985 PF03466 LysR substrate binding domain DOO79_00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_00990 PF01042 Endoribonuclease L-PSP DOO79_01005 PF02203 Tar ligand binding domain homologue DOO79_01005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_01005 PF00672 HAMP domain DOO79_01020 PF03466 LysR substrate binding domain DOO79_01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_01025 PF02525 Flavodoxin-like fold DOO79_01100 PF03979 Sigma-70 factor, region 1.1 DOO79_01100 PF00140 Sigma-70 factor, region 1.2 DOO79_01100 PF04546 Sigma-70, non-essential region DOO79_01100 PF04545 Sigma-70, region 4 DOO79_01100 PF04539 Sigma-70 region 3 DOO79_01100 PF04542 Sigma-70 region 2 DOO79_01105 PF02580 D-Tyr-tRNA(Tyr) deacylase DOO79_01110 PF03279 Bacterial lipid A biosynthesis acyltransferase DOO79_01130 PF00925 GTP cyclohydrolase II DOO79_01150 PF00535 Glycosyl transferase family 2 DOO79_01165 PF01029 NusB family DOO79_01165 PF01189 16S rRNA methyltransferase RsmB/F DOO79_01170 PF02911 Formyl transferase, C-terminal domain DOO79_01170 PF00551 Formyl transferase DOO79_01175 PF01327 Polypeptide deformylase DOO79_01180 PF01476 LysM domain DOO79_01185 PF02481 DNA recombination-mediator protein A DOO79_01185 PF17782 DprA winged helix domain DOO79_01190 PF04361 Protein of unknown function (DUF494) DOO79_01195 PF07963 Prokaryotic N-terminal methylation motif DOO79_01195 PF00114 Pilin (bacterial filament) DOO79_01205 PF01131 DNA topoisomerase DOO79_01205 PF01751 Toprim domain DOO79_01205 PF13368 Topoisomerase C-terminal repeat DOO79_01210 PF01300 Telomere recombination DOO79_01240 PF01343 Peptidase family S49 DOO79_01245 PF01554 MatE DOO79_01265 PF00270 DEAD/DEAH box helicase DOO79_01265 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DOO79_01265 PF18074 Primosomal protein N C-terminal domain DOO79_01265 PF17764 3′ DNA-binding domain (3′BD) DOO79_01265 PF00271 Helicase conserved C-terminal domain DOO79_01270 PF13417 Glutathione S-transferase, N-terminal domain DOO79_01270 PF00043 Glutathione S-transferase, C-terminal domain DOO79_01285 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_01295 PF04545 Sigma-70, region 4 DOO79_01295 PF04542 Sigma-70 region 2 DOO79_01300 PF03167 Uracil DNA glycosylase superfamily DOO79_01305 PF00072 Response regulator receiver domain DOO79_01310 PF18075 FtsX extracellular domain DOO79_01315 PF00005 ABC transporter DOO79_01320 PF00270 DEAD/DEAH box helicase DOO79_01320 PF00271 Helicase conserved C-terminal domain DOO79_01320 PF12300 ATP-dependent RNA helicase RhlB DOO79_01325 PF00085 Thioredoxin DOO79_01330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOO79_01330 PF07498 Rho termination factor, N-terminal domain DOO79_01330 PF07497 Rho termination factor, RNA-binding domain DOO79_01335 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DOO79_01340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_01340 PF03466 LysR substrate binding domain DOO79_01350 PF03971 Monomeric isocitrate dehydrogenase DOO79_01365 PF09704 CRISPR-associated protein (Cas_Cas5) DOO79_01385 PF01867 CRISPR associated protein Cas1 DOO79_01390 PF09827 CRISPR associated protein Cas2 DOO79_01400 PF01476 LysM domain DOO79_01400 PF04972 BON domain DOO79_01405 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DOO79_01405 PF14489 QueF-like protein DOO79_01410 PF01546 Peptidase family M20/M25/M40 DOO79_01410 PF07687 Peptidase dimerisation domain DOO79_01415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_01420 PF00873 AcrB/AcrD/AcrF family DOO79_01425 PF00873 AcrB/AcrD/AcrF family DOO79_01430 PF07063 Domain of unknown function (DUF1338) DOO79_01485 PF01427 D-ala-D-ala dipeptidase DOO79_01490 PF01510 N-acetylmuramoyl-L-alanine amidase DOO79_01500 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOO79_01500 PF13378 Enolase C-terminal domain-like DOO79_01510 PF13520 Amino acid permease DOO79_01525 PF05360 yiaA/B two helix domain DOO79_01530 PF07995 Glucose / Sorbosone dehydrogenase DOO79_01535 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOO79_01535 PF00933 Glycosyl hydrolase family 3 N terminal domain DOO79_01535 PF14310 Fibronectin type III-like domain DOO79_01540 PF02152 Dihydroneopterin aldolase DOO79_01545 PF00814 Glycoprotease family DOO79_01550 PF01165 Ribosomal protein S21 DOO79_01555 PF09424 Yqey-like protein DOO79_01565 PF03631 Virulence factor BrkB DOO79_01570 PF01807 CHC2 zinc finger DOO79_01570 PF08278 DNA primase DnaG DnaB-binding DOO79_01570 PF08275 DNA primase catalytic core, N-terminal domain DOO79_01570 PF10410 DnaB-helicase binding domain of primase DOO79_01575 PF13593 SBF-like CPA transporter family (DUF4137) DOO79_01585 PF01040 UbiA prenyltransferase family DOO79_01610 PF00510 Cytochrome c oxidase subunit III DOO79_01615 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DOO79_01625 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOO79_01630 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DOO79_01630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOO79_01640 PF14850 DNA-binding domain of Proline dehydrogenase DOO79_01640 PF00171 Aldehyde dehydrogenase family DOO79_01640 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DOO79_01640 PF01619 Proline dehydrogenase DOO79_01670 PF00579 tRNA synthetases class I (W and Y) DOO79_01675 PF04225 Opacity-associated protein A LysM-like domain DOO79_01675 PF01551 Peptidase family M23 DOO79_01680 PF03702 Anhydro-N-acetylmuramic acid kinase DOO79_01690 PF07690 Major Facilitator Superfamily DOO79_01695 PF03372 Endonuclease/Exonuclease/phosphatase family DOO79_01700 PF00156 Phosphoribosyl transferase domain DOO79_01710 PF13614 AAA domain DOO79_01715 PF17762 HTH domain found in ParB protein DOO79_01715 PF02195 ParB-like nuclease domain DOO79_01730 PF01370 NAD dependent epimerase/dehydratase family DOO79_01735 PF00535 Glycosyl transferase family 2 DOO79_01750 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOO79_01750 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOO79_01750 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOO79_01750 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOO79_01755 PF00692 dUTPase DOO79_01760 PF02441 Flavoprotein DOO79_01760 PF04127 DNA / pantothenate metabolism flavoprotein DOO79_01765 PF04002 RadC-like JAB domain DOO79_01770 PF00750 tRNA synthetases class I (R) DOO79_01770 PF03485 Arginyl tRNA synthetase N terminal domain DOO79_01770 PF05746 DALR anticodon binding domain DOO79_01785 PF00106 short chain dehydrogenase DOO79_01790 PF01757 Acyltransferase family DOO79_01800 PF00550 Phosphopantetheine attachment site DOO79_01800 PF00975 Thioesterase domain DOO79_01800 PF00501 AMP-binding enzyme DOO79_01800 PF00668 Condensation domain DOO79_01800 PF13193 AMP-binding enzyme C-terminal domain DOO79_01805 PF17810 Arginine decarboxylase helical bundle domain DOO79_01805 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOO79_01805 PF17944 Arginine decarboxylase C-terminal helical extension DOO79_01810 PF17284 Spermidine synthase tetramerisation domain DOO79_01855 PF00543 Nitrogen regulatory protein P-II DOO79_01860 PF04380 Membrane fusogenic activity DOO79_01865 PF13335 Magnesium chelatase, subunit ChlI C-terminal DOO79_01865 PF01078 Magnesium chelatase, subunit ChlI DOO79_01880 PF12792 CSS motif domain associated with EAL DOO79_01880 PF00563 EAL domain DOO79_01885 PF00487 Fatty acid desaturase DOO79_01890 PF00111 2Fe-2S iron-sulfur cluster binding domain DOO79_01890 PF00175 Oxidoreductase NAD-binding domain DOO79_01890 PF00970 Oxidoreductase FAD-binding domain DOO79_01895 PF00440 Bacterial regulatory proteins, tetR family DOO79_01915 PF01139 tRNA-splicing ligase RtcB DOO79_01950 PF01370 NAD dependent epimerase/dehydratase family DOO79_01950 PF08338 Domain of unknown function (DUF1731) DOO79_01955 PF00486 Transcriptional regulatory protein, C terminal DOO79_01955 PF00072 Response regulator receiver domain DOO79_01960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_01960 PF08521 Two-component sensor kinase N-terminal DOO79_01960 PF00512 His Kinase A (phospho-acceptor) domain DOO79_01990 PF00595 PDZ domain DOO79_02010 PF01594 AI-2E family transporter DOO79_02015 PF13419 Haloacid dehalogenase-like hydrolase DOO79_02020 PF02789 Cytosol aminopeptidase family, N-terminal domain DOO79_02020 PF00883 Cytosol aminopeptidase family, catalytic domain DOO79_02035 PF00199 Catalase DOO79_02060 PF00072 Response regulator receiver domain DOO79_02060 PF00196 Bacterial regulatory proteins, luxR family DOO79_02065 PF07730 Histidine kinase DOO79_02070 PF13533 Biotin-lipoyl like DOO79_02075 PF00005 ABC transporter DOO79_02095 PF00892 EamA-like transporter family DOO79_02100 PF00892 EamA-like transporter family DOO79_02120 PF00753 Metallo-beta-lactamase superfamily DOO79_02125 PF00579 tRNA synthetases class I (W and Y) DOO79_02130 PF05532 CsbD-like DOO79_02145 PF00491 Arginase family DOO79_02175 PF02223 Thymidylate kinase DOO79_02225 PF03309 Type III pantothenate kinase DOO79_02230 PF03099 Biotin/lipoate A/B protein ligase family DOO79_02230 PF08279 HTH domain DOO79_02230 PF02237 Biotin protein ligase C terminal domain DOO79_02245 PF06167 Glucose-regulated metallo-peptidase M90 DOO79_02260 PF00512 His Kinase A (phospho-acceptor) domain DOO79_02260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_02260 PF00672 HAMP domain DOO79_02265 PF00072 Response regulator receiver domain DOO79_02265 PF00486 Transcriptional regulatory protein, C terminal DOO79_02275 PF01207 Dihydrouridine synthase (Dus) DOO79_02295 PF06628 Catalase-related immune-responsive DOO79_02295 PF00199 Catalase DOO79_02305 PF13307 Helicase C-terminal domain DOO79_02305 PF06733 DEAD_2 DOO79_02320 PF08501 Shikimate dehydrogenase substrate binding domain DOO79_02320 PF01488 Shikimate / quinate 5-dehydrogenase DOO79_02320 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DOO79_02330 PF00667 FAD binding domain DOO79_02330 PF00258 Flavodoxin DOO79_02330 PF00175 Oxidoreductase NAD-binding domain DOO79_02340 PF03466 LysR substrate binding domain DOO79_02340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_02355 PF00490 Delta-aminolevulinic acid dehydratase DOO79_02380 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DOO79_02380 PF00326 Prolyl oligopeptidase family DOO79_02385 PF02798 Glutathione S-transferase, N-terminal domain DOO79_02385 PF00043 Glutathione S-transferase, C-terminal domain DOO79_02425 PF00005 ABC transporter DOO79_02435 PF01381 Helix-turn-helix DOO79_02445 PF01229 Glycosyl hydrolases family 39 DOO79_02450 PF02583 Metal-sensitive transcriptional repressor DOO79_02455 PF16916 Dimerisation domain of Zinc Transporter DOO79_02455 PF01545 Cation efflux family DOO79_02465 PF00593 TonB dependent receptor DOO79_02465 PF07715 TonB-dependent Receptor Plug Domain DOO79_02475 PF01965 DJ-1/PfpI family DOO79_02475 PF12833 Helix-turn-helix domain DOO79_02480 PF00175 Oxidoreductase NAD-binding domain DOO79_02480 PF00111 2Fe-2S iron-sulfur cluster binding domain DOO79_02480 PF00970 Oxidoreductase FAD-binding domain DOO79_02485 PF00005 ABC transporter DOO79_02490 PF01061 ABC-2 type transporter DOO79_02500 PF08546 Ketopantoate reductase PanE/ApbA C terminal DOO79_02500 PF02558 Ketopantoate reductase PanE/ApbA DOO79_02535 PF00268 Ribonucleotide reductase, small chain DOO79_02545 PF03477 ATP cone domain DOO79_02545 PF00317 Ribonucleotide reductase, all-alpha domain DOO79_02545 PF02867 Ribonucleotide reductase, barrel domain DOO79_02560 PF13607 Succinyl-CoA ligase like flavodoxin domain DOO79_02560 PF13380 CoA binding domain DOO79_02560 PF00583 Acetyltransferase (GNAT) family DOO79_02565 PF00571 CBS domain DOO79_02565 PF03448 MgtE intracellular N domain DOO79_02565 PF01769 Divalent cation transporter DOO79_02570 PF00194 Eukaryotic-type carbonic anhydrase DOO79_02575 PF02254 TrkA-N domain DOO79_02575 PF00999 Sodium/hydrogen exchanger family DOO79_02585 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DOO79_02585 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DOO79_02590 PF00723 Glycosyl hydrolases family 15 DOO79_02605 PF05166 YcgL domain DOO79_02610 PF02801 Beta-ketoacyl synthase, C-terminal domain DOO79_02610 PF00109 Beta-ketoacyl synthase, N-terminal domain DOO79_02620 PF00535 Glycosyl transferase family 2 DOO79_02670 PF07977 FabA-like domain DOO79_02675 PF01553 Acyltransferase DOO79_02685 PF00550 Phosphopantetheine attachment site DOO79_02690 PF04820 Tryptophan halogenase DOO79_02715 PF00326 Prolyl oligopeptidase family DOO79_02715 PF07676 WD40-like Beta Propeller Repeat DOO79_02735 PF01218 Coproporphyrinogen III oxidase DOO79_02745 PF01612 3'-5' exonuclease DOO79_02745 PF01367 5'-3' exonuclease, C-terminal SAM fold DOO79_02745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOO79_02745 PF00476 DNA polymerase family A DOO79_02815 PF04717 Type VI secretion system, phage-baseplate injector DOO79_02830 PF03793 PASTA domain DOO79_02830 PF00069 Protein kinase domain DOO79_02840 PF08281 Sigma-70, region 4 DOO79_02840 PF04542 Sigma-70 region 2 DOO79_02860 PF00328 Histidine phosphatase superfamily (branch 2) DOO79_02930 PF05638 Type VI secretion system effector, Hcp DOO79_02965 PF12464 Maltose acetyltransferase DOO79_02965 PF14602 Hexapeptide repeat of succinyl-transferase DOO79_02975 PF00580 UvrD/REP helicase N-terminal domain DOO79_02975 PF13361 UvrD-like helicase C-terminal domain DOO79_02990 PF13091 PLD-like domain DOO79_02990 PF13396 Phospholipase_D-nuclease N-terminal DOO79_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_02995 PF03466 LysR substrate binding domain DOO79_03000 PF03737 Aldolase/RraA DOO79_03005 PF04303 PrpF protein DOO79_03015 PF04909 Amidohydrolase DOO79_03020 PF00471 Ribosomal protein L33 DOO79_03025 PF00830 Ribosomal L28 family DOO79_03030 PF00873 AcrB/AcrD/AcrF family DOO79_03045 PF13533 Biotin-lipoyl like DOO79_03065 PF02527 rRNA small subunit methyltransferase G DOO79_03070 PF16655 PhoD-like phosphatase, N-terminal domain DOO79_03070 PF09423 PhoD-like phosphatase DOO79_03075 PF09423 PhoD-like phosphatase DOO79_03075 PF16655 PhoD-like phosphatase, N-terminal domain DOO79_03080 PF01648 4'-phosphopantetheinyl transferase superfamily DOO79_03085 PF04226 Transglycosylase associated protein DOO79_03095 PF03372 Endonuclease/Exonuclease/phosphatase family DOO79_03100 PF00480 ROK family DOO79_03110 PF09312 SurA N-terminal domain DOO79_03110 PF00639 PPIC-type PPIASE domain DOO79_03120 PF00474 Sodium:solute symporter family DOO79_03125 PF04341 Protein of unknown function, DUF485 DOO79_03135 PF00501 AMP-binding enzyme DOO79_03135 PF13193 AMP-binding enzyme C-terminal domain DOO79_03135 PF16177 Acetyl-coenzyme A synthetase N-terminus DOO79_03145 PF00072 Response regulator receiver domain DOO79_03145 PF00196 Bacterial regulatory proteins, luxR family DOO79_03175 PF04616 Glycosyl hydrolases family 43 DOO79_03175 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DOO79_03185 PF00248 Aldo/keto reductase family DOO79_03200 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOO79_03210 PF13378 Enolase C-terminal domain-like DOO79_03210 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOO79_03215 PF05336 L-rhamnose mutarotase DOO79_03220 PF07690 Major Facilitator Superfamily DOO79_03225 PF09339 IclR helix-turn-helix domain DOO79_03225 PF01614 Bacterial transcriptional regulator DOO79_03235 PF02659 Putative manganese efflux pump DOO79_03240 PF00512 His Kinase A (phospho-acceptor) domain DOO79_03240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_03255 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DOO79_03255 PF06165 Glycosyltransferase family 36 DOO79_03295 PF04357 TamB, inner membrane protein subunit of TAM complex DOO79_03300 PF01103 Surface antigen DOO79_03300 PF17243 POTRA domain TamA domain 1 DOO79_03345 PF02092 Glycyl-tRNA synthetase beta subunit DOO79_03345 PF05746 DALR anticodon binding domain DOO79_03350 PF02091 Glycyl-tRNA synthetase alpha subunit DOO79_03370 PF00117 Glutamine amidotransferase class-I DOO79_03370 PF00958 GMP synthase C terminal domain DOO79_03380 PF00902 Sec-independent protein translocase protein (TatC) DOO79_03385 PF02416 mttA/Hcf106 family DOO79_03390 PF02416 mttA/Hcf106 family DOO79_03400 PF00762 Ferrochelatase DOO79_03405 PF12697 Alpha/beta hydrolase family DOO79_03425 PF04381 Putative exonuclease, RdgC DOO79_03430 PF01171 PP-loop family DOO79_03445 PF00356 Bacterial regulatory proteins, lacI family DOO79_03460 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOO79_03460 PF13378 Enolase C-terminal domain-like DOO79_03465 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DOO79_03465 PF04616 Glycosyl hydrolases family 43 DOO79_03470 PF14310 Fibronectin type III-like domain DOO79_03470 PF00933 Glycosyl hydrolase family 3 N terminal domain DOO79_03470 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOO79_03470 PF07691 PA14 domain DOO79_03475 PF08125 Mannitol dehydrogenase C-terminal domain DOO79_03475 PF01232 Mannitol dehydrogenase Rossmann domain DOO79_03520 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) DOO79_03545 PF03377 TAL effector repeat DOO79_03575 PF02796 Helix-turn-helix domain of resolvase DOO79_03575 PF00239 Resolvase, N terminal domain DOO79_03625 PF02810 SEC-C motif DOO79_03625 PF03695 Uncharacterised protein family (UPF0149) DOO79_03665 PF07883 Cupin domain DOO79_03680 PF00155 Aminotransferase class I and II DOO79_03685 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DOO79_03715 PF07726 ATPase family associated with various cellular activities (AAA) DOO79_03715 PF17863 AAA lid domain DOO79_03755 PF08946 Osmosensory transporter coiled coil DOO79_03755 PF00083 Sugar (and other) transporter DOO79_03765 PF00085 Thioredoxin DOO79_03780 PF13344 Haloacid dehalogenase-like hydrolase DOO79_03780 PF00293 NUDIX domain DOO79_03790 PF16485 Protealysin propeptide DOO79_03790 PF02868 Thermolysin metallopeptidase, alpha-helical domain DOO79_03790 PF01447 Thermolysin metallopeptidase, catalytic domain DOO79_03810 PF05532 CsbD-like DOO79_03870 PF00849 RNA pseudouridylate synthase DOO79_03930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOO79_03930 PF02785 Biotin carboxylase C-terminal domain DOO79_03930 PF00289 Biotin carboxylase, N-terminal domain DOO79_03930 PF00364 Biotin-requiring enzyme DOO79_03935 PF01425 Amidase DOO79_03970 PF01609 Transposase DDE domain DOO79_03970 PF05598 Transposase domain (DUF772) DOO79_03985 PF13538 UvrD-like helicase C-terminal domain DOO79_03995 PF17946 RecC C-terminal domain DOO79_04010 PF00005 ABC transporter DOO79_04015 PF02405 Permease MlaE DOO79_04020 PF02470 MlaD protein DOO79_04025 PF05494 MlaC protein DOO79_04035 PF04333 MlaA lipoprotein DOO79_04045 PF00255 Glutathione peroxidase DOO79_04055 PF02646 RmuC family DOO79_04060 PF00107 Zinc-binding dehydrogenase DOO79_04060 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_04065 PF03466 LysR substrate binding domain DOO79_04080 PF13417 Glutathione S-transferase, N-terminal domain DOO79_04080 PF00043 Glutathione S-transferase, C-terminal domain DOO79_04090 PF13520 Amino acid permease DOO79_04105 PF10947 Protein of unknown function (DUF2628) DOO79_04135 PF10672 S-adenosylmethionine-dependent methyltransferase DOO79_04135 PF17785 PUA-like domain DOO79_04145 PF03741 Integral membrane protein TerC family DOO79_04155 PF01694 Rhomboid family DOO79_04160 PF03009 Glycerophosphoryl diester phosphodiesterase family DOO79_04170 PF01569 PAP2 superfamily DOO79_04175 PF10396 GTP-binding protein TrmE N-terminus DOO79_04175 PF01926 50S ribosome-binding GTPase DOO79_04175 PF12631 MnmE helical domain DOO79_04180 PF01522 Polysaccharide deacetylase DOO79_04185 PF14849 YidC periplasmic domain DOO79_04185 PF02096 60Kd inner membrane protein DOO79_04190 PF00825 Ribonuclease P DOO79_04195 PF00468 Ribosomal protein L34 DOO79_04200 PF08299 Bacterial dnaA protein helix-turn-helix DOO79_04200 PF11638 DnaA N-terminal domain DOO79_04200 PF00308 Bacterial dnaA protein DOO79_04205 PF02768 DNA polymerase III beta subunit, C-terminal domain DOO79_04205 PF02767 DNA polymerase III beta subunit, central domain DOO79_04205 PF00712 DNA polymerase III beta subunit, N-terminal domain DOO79_04210 PF02463 RecF/RecN/SMC N terminal domain DOO79_04215 PF01751 Toprim domain DOO79_04215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_04215 PF00986 DNA gyrase B subunit, carboxyl terminus DOO79_04215 PF18053 DNA gyrase B subunit insert domain DOO79_04215 PF00204 DNA gyrase B DOO79_04225 PF01435 Peptidase family M48 DOO79_04240 PF01618 MotA/TolQ/ExbB proton channel family DOO79_04245 PF02472 Biopolymer transport protein ExbD/TolR DOO79_04250 PF02472 Biopolymer transport protein ExbD/TolR DOO79_04255 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DOO79_04265 PF13396 Phospholipase_D-nuclease N-terminal DOO79_04265 PF13091 PLD-like domain DOO79_04300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DOO79_04315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOO79_04315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOO79_04320 PF03572 Peptidase family S41 DOO79_04320 PF13180 PDZ domain DOO79_04325 PF01551 Peptidase family M23 DOO79_04335 PF04389 Peptidase family M28 DOO79_04345 PF00150 Cellulase (glycosyl hydrolase family 5) DOO79_04355 PF00150 Cellulase (glycosyl hydrolase family 5) DOO79_04365 PF00150 Cellulase (glycosyl hydrolase family 5) DOO79_04375 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_04375 PF00107 Zinc-binding dehydrogenase DOO79_04380 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_04380 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOO79_04385 PF01645 Conserved region in glutamate synthase DOO79_04385 PF01493 GXGXG motif DOO79_04385 PF00310 Glutamine amidotransferases class-II DOO79_04385 PF04898 Glutamate synthase central domain DOO79_04415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_04415 PF03466 LysR substrate binding domain DOO79_04435 PF02397 Bacterial sugar transferase DOO79_04440 PF02350 UDP-N-acetylglucosamine 2-epimerase DOO79_04465 PF00534 Glycosyl transferases group 1 DOO79_04465 PF13439 Glycosyltransferase Family 4 DOO79_04500 PF16363 GDP-mannose 4,6 dehydratase DOO79_04515 PF00664 ABC transporter transmembrane region DOO79_04515 PF00005 ABC transporter DOO79_04530 PF13537 Glutamine amidotransferase domain DOO79_04530 PF00733 Asparagine synthase DOO79_04545 PF02603 HPr Serine kinase N terminus DOO79_04545 PF07475 HPr Serine kinase C-terminal domain DOO79_04550 PF00685 Sulfotransferase domain DOO79_04645 PF00271 Helicase conserved C-terminal domain DOO79_04645 PF09369 Domain of unknown function (DUF1998) DOO79_04645 PF00270 DEAD/DEAH box helicase DOO79_04650 PF03006 Haemolysin-III related DOO79_04670 PF00106 short chain dehydrogenase DOO79_04690 PF02525 Flavodoxin-like fold DOO79_04700 PF01850 PIN domain DOO79_04725 PF13091 PLD-like domain DOO79_04725 PF13396 Phospholipase_D-nuclease N-terminal DOO79_04730 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family DOO79_04735 PF00083 Sugar (and other) transporter DOO79_04740 PF04632 Fusaric acid resistance protein family DOO79_04745 PF02321 Outer membrane efflux protein DOO79_04750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_04750 PF00529 HlyD membrane-fusion protein of T1SS DOO79_04755 PF07869 Protein of unknown function (DUF1656) DOO79_04765 PF01227 GTP cyclohydrolase I DOO79_04800 PF01263 Aldose 1-epimerase DOO79_04815 PF01126 Heme oxygenase DOO79_04820 PF08446 PAS fold DOO79_04820 PF13426 PAS domain DOO79_04820 PF00360 Phytochrome region DOO79_04820 PF01590 GAF domain DOO79_04825 PF03594 Benzoate membrane transport protein DOO79_04855 PF06827 Zinc finger found in FPG and IleRS DOO79_04855 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOO79_04855 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOO79_04875 PF00580 UvrD/REP helicase N-terminal domain DOO79_04875 PF13361 UvrD-like helicase C-terminal domain DOO79_04880 PF13302 Acetyltransferase (GNAT) domain DOO79_04890 PF04337 Protein of unknown function, DUF480 DOO79_04900 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DOO79_04905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOO79_04910 PF04820 Tryptophan halogenase DOO79_04925 PF00356 Bacterial regulatory proteins, lacI family DOO79_04940 PF01553 Acyltransferase DOO79_04945 PF02801 Beta-ketoacyl synthase, C-terminal domain DOO79_04945 PF00109 Beta-ketoacyl synthase, N-terminal domain DOO79_04945 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_04945 PF00698 Acyl transferase domain DOO79_04945 PF16197 Ketoacyl-synthetase C-terminal extension DOO79_04945 PF14765 Polyketide synthase dehydratase DOO79_04945 PF08659 KR domain DOO79_04945 PF00107 Zinc-binding dehydrogenase DOO79_04945 PF00550 Phosphopantetheine attachment site DOO79_04975 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DOO79_04975 PF12241 Trans-2-enoyl-CoA reductase catalytic region DOO79_04975 PF07055 Enoyl reductase FAD binding domain DOO79_04985 PF00294 pfkB family carbohydrate kinase DOO79_05060 PF00128 Alpha amylase, catalytic domain DOO79_05060 PF11896 Domain of unknown function (DUF3416) DOO79_05065 PF16657 Maltogenic Amylase, C-terminal domain DOO79_05065 PF00128 Alpha amylase, catalytic domain DOO79_05070 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOO79_05070 PF02806 Alpha amylase, C-terminal all-beta domain DOO79_05070 PF00128 Alpha amylase, catalytic domain DOO79_05080 PF00248 Aldo/keto reductase family DOO79_05085 PF00135 Carboxylesterase family DOO79_05090 PF07859 alpha/beta hydrolase fold DOO79_05090 PF13472 GDSL-like Lipase/Acylhydrolase family DOO79_05100 PF03480 Bacterial extracellular solute-binding protein, family 7 DOO79_05110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DOO79_05115 PF04616 Glycosyl hydrolases family 43 DOO79_05115 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DOO79_05120 PF00356 Bacterial regulatory proteins, lacI family DOO79_05130 PF04962 KduI/IolB family DOO79_05145 PF00657 GDSL-like Lipase/Acylhydrolase DOO79_05160 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DOO79_05165 PF01037 Lrp/AsnC ligand binding domain DOO79_05170 PF00593 TonB dependent receptor DOO79_05170 PF07715 TonB-dependent Receptor Plug Domain DOO79_05170 PF07660 Secretin and TonB N terminus short domain DOO79_05175 PF01734 Patatin-like phospholipase DOO79_05185 PF00005 ABC transporter DOO79_05200 PF00005 ABC transporter DOO79_05205 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_05215 PF12867 DinB superfamily DOO79_05215 PF03781 Sulfatase-modifying factor enzyme 1 DOO79_05270 PF10609 NUBPL iron-transfer P-loop NTPase DOO79_05270 PF01883 Iron-sulfur cluster assembly protein DOO79_05285 PF13091 PLD-like domain DOO79_05295 PF03061 Thioesterase superfamily DOO79_05325 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_05325 PF00107 Zinc-binding dehydrogenase DOO79_05335 PF02673 Bacitracin resistance protein BacA DOO79_05345 PF03951 Glutamine synthetase, beta-Grasp domain DOO79_05345 PF00120 Glutamine synthetase, catalytic domain DOO79_05350 PF00543 Nitrogen regulatory protein P-II DOO79_05355 PF00909 Ammonium Transporter Family DOO79_05360 PF00512 His Kinase A (phospho-acceptor) domain DOO79_05360 PF00989 PAS fold DOO79_05360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_05365 PF00072 Response regulator receiver domain DOO79_05365 PF00158 Sigma-54 interaction domain DOO79_05365 PF02954 Bacterial regulatory protein, Fis family DOO79_05370 PF00080 Copper/zinc superoxide dismutase (SODC) DOO79_05375 PF00080 Copper/zinc superoxide dismutase (SODC) DOO79_05390 PF02803 Thiolase, C-terminal domain DOO79_05390 PF00108 Thiolase, N-terminal domain DOO79_05425 PF00581 Rhodanese-like domain DOO79_05430 PF02556 Preprotein translocase subunit SecB DOO79_05435 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DOO79_05435 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DOO79_05480 PF01313 Bacterial export proteins, family 3 DOO79_05490 PF01312 FlhB HrpN YscU SpaS Family DOO79_05495 PF00771 FHIPEP family DOO79_05500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_05500 PF00460 Flagella basal body rod protein DOO79_05505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_05505 PF00460 Flagella basal body rod protein DOO79_05520 PF02119 Flagellar P-ring protein DOO79_05535 PF02049 Flagellar hook-basal body complex protein FliE DOO79_05540 PF01514 Secretory protein of YscJ/FliF family DOO79_05540 PF08345 Flagellar M-ring protein C-terminal DOO79_05555 PF18269 T3SS EscN ATPase C-terminal domain DOO79_05555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOO79_05555 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOO79_05580 PF03963 Flagellar hook capping protein - N-terminal region DOO79_05585 PF07559 Flagellar basal body protein FlaE DOO79_05585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_05585 PF00460 Flagella basal body rod protein DOO79_05595 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOO79_05605 PF00813 FliP family DOO79_05610 PF04539 Sigma-70 region 3 DOO79_05610 PF04545 Sigma-70, region 4 DOO79_05610 PF00140 Sigma-70 factor, region 1.2 DOO79_05610 PF04542 Sigma-70 region 2 DOO79_05615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOO79_05615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOO79_05615 PF00205 Thiamine pyrophosphate enzyme, central domain DOO79_05620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_05625 PF02954 Bacterial regulatory protein, Fis family DOO79_05625 PF00072 Response regulator receiver domain DOO79_05625 PF00158 Sigma-54 interaction domain DOO79_05640 PF07690 Major Facilitator Superfamily DOO79_05645 PF00588 SpoU rRNA Methylase family DOO79_05660 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOO79_05660 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOO79_05665 PF13784 Fic/DOC family N-terminal DOO79_05665 PF02661 Fic/DOC family DOO79_05670 PF00561 alpha/beta hydrolase fold DOO79_05675 PF03692 Putative zinc- or iron-chelating domain DOO79_05680 PF00501 AMP-binding enzyme DOO79_05685 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DOO79_05700 PF07478 D-ala D-ala ligase C-terminus DOO79_05700 PF01820 D-ala D-ala ligase N-terminus DOO79_05710 PF03109 ABC1 family DOO79_05720 PF00849 RNA pseudouridylate synthase DOO79_05730 PF00472 RF-1 domain DOO79_05740 PF01112 Asparaginase DOO79_05745 PF01432 Peptidase family M3 DOO79_05750 PF12706 Beta-lactamase superfamily domain DOO79_05770 PF12833 Helix-turn-helix domain DOO79_05775 PF00999 Sodium/hydrogen exchanger family DOO79_05780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_05780 PF03466 LysR substrate binding domain DOO79_05785 PF01274 Malate synthase DOO79_05790 PF00463 Isocitrate lyase family DOO79_05795 PF00990 Diguanylate cyclase, GGDEF domain DOO79_05830 PF02785 Biotin carboxylase C-terminal domain DOO79_05830 PF18140 Propionyl-coenzyme A carboxylase BT domain DOO79_05830 PF00364 Biotin-requiring enzyme DOO79_05830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOO79_05830 PF00289 Biotin carboxylase, N-terminal domain DOO79_05835 PF01039 Carboxyl transferase domain DOO79_05840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_05840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_05840 PF02770 Acyl-CoA dehydrogenase, middle domain DOO79_05845 PF00440 Bacterial regulatory proteins, tetR family DOO79_05845 PF17932 Tetracyclin repressor-like, C-terminal domain DOO79_05900 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOO79_05900 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOO79_05920 PF03969 AFG1-like ATPase DOO79_05925 PF01047 MarR family DOO79_05930 PF02566 OsmC-like protein DOO79_05960 PF00107 Zinc-binding dehydrogenase DOO79_05960 PF16884 N-terminal domain of oxidoreductase DOO79_05965 PF00248 Aldo/keto reductase family DOO79_05975 PF00849 RNA pseudouridylate synthase DOO79_05990 PF04408 Helicase associated domain (HA2) DOO79_05990 PF00271 Helicase conserved C-terminal domain DOO79_05990 PF00270 DEAD/DEAH box helicase DOO79_05990 PF08482 ATP-dependent helicase C-terminal DOO79_05995 PF07308 Protein of unknown function (DUF1456) DOO79_06000 PF00576 HIUase/Transthyretin family DOO79_06005 PF13454 FAD-NAD(P)-binding DOO79_06010 PF09349 OHCU decarboxylase DOO79_06010 PF01014 Uricase DOO79_06025 PF00266 Aminotransferase class-V DOO79_06030 PF07687 Peptidase dimerisation domain DOO79_06030 PF01546 Peptidase family M20/M25/M40 DOO79_06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_06035 PF03466 LysR substrate binding domain DOO79_06040 PF07690 Major Facilitator Superfamily DOO79_06055 PF01425 Amidase DOO79_06060 PF01156 Inosine-uridine preferring nucleoside hydrolase DOO79_06070 PF00860 Permease family DOO79_06080 PF00111 2Fe-2S iron-sulfur cluster binding domain DOO79_06085 PF00355 Rieske [2Fe-2S] domain DOO79_06090 PF03466 LysR substrate binding domain DOO79_06090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_06095 PF01026 TatD related DNase DOO79_06120 PF07690 Major Facilitator Superfamily DOO79_06135 PF02146 Sir2 family DOO79_06140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOO79_06145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOO79_06145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOO79_06155 PF00551 Formyl transferase DOO79_06160 PF00486 Transcriptional regulatory protein, C terminal DOO79_06160 PF00072 Response regulator receiver domain DOO79_06165 PF00512 His Kinase A (phospho-acceptor) domain DOO79_06165 PF00672 HAMP domain DOO79_06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_06170 PF00529 HlyD membrane-fusion protein of T1SS DOO79_06170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_06175 PF00873 AcrB/AcrD/AcrF family DOO79_06180 PF02321 Outer membrane efflux protein DOO79_06195 PF02677 Epoxyqueuosine reductase QueH DOO79_06200 PF03466 LysR substrate binding domain DOO79_06200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_06205 PF03358 NADPH-dependent FMN reductase DOO79_06215 PF08267 Cobalamin-independent synthase, N-terminal domain DOO79_06215 PF01717 Cobalamin-independent synthase, Catalytic domain DOO79_06220 PF03812 2-keto-3-deoxygluconate permease DOO79_06235 PF05368 NmrA-like family DOO79_06240 PF01638 HxlR-like helix-turn-helix DOO79_06310 PF07690 Major Facilitator Superfamily DOO79_06315 PF01966 HD domain DOO79_06315 PF11871 Domain of unknown function (DUF3391) DOO79_06340 PF00171 Aldehyde dehydrogenase family DOO79_06350 PF01494 FAD binding domain DOO79_06360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOO79_06360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOO79_06365 PF00230 Major intrinsic protein DOO79_06370 PF01266 FAD dependent oxidoreductase DOO79_06370 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DOO79_06375 PF00455 DeoR C terminal sensor domain DOO79_06375 PF08220 DeoR-like helix-turn-helix domain DOO79_06385 PF00111 2Fe-2S iron-sulfur cluster binding domain DOO79_06385 PF00970 Oxidoreductase FAD-binding domain DOO79_06390 PF00355 Rieske [2Fe-2S] domain DOO79_06395 PF01144 Coenzyme A transferase DOO79_06400 PF01144 Coenzyme A transferase DOO79_06405 PF02803 Thiolase, C-terminal domain DOO79_06405 PF00108 Thiolase, N-terminal domain DOO79_06410 PF00775 Dioxygenase DOO79_06410 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DOO79_06420 PF10397 Adenylosuccinate lyase C-terminus DOO79_06420 PF00206 Lyase DOO79_06425 PF12146 Serine aminopeptidase, S33 DOO79_06430 PF02627 Carboxymuconolactone decarboxylase family DOO79_06440 PF09339 IclR helix-turn-helix domain DOO79_06440 PF01614 Bacterial transcriptional regulator DOO79_06450 PF07859 alpha/beta hydrolase fold DOO79_06455 PF10677 Protein of unknown function (DUF2490) DOO79_06460 PF01134 Glucose inhibited division protein A DOO79_06460 PF13932 GidA associated domain DOO79_06470 PF00291 Pyridoxal-phosphate dependent enzyme DOO79_06490 PF13649 Methyltransferase domain DOO79_06500 PF12697 Alpha/beta hydrolase family DOO79_06510 PF00155 Aminotransferase class I and II DOO79_06515 PF06968 Biotin and Thiamin Synthesis associated domain DOO79_06515 PF04055 Radical SAM superfamily DOO79_06525 PF01040 UbiA prenyltransferase family DOO79_06555 PF05819 NolX protein DOO79_06590 PF01313 Bacterial export proteins, family 3 DOO79_06595 PF00813 FliP family DOO79_06610 PF00771 FHIPEP family DOO79_06615 PF01312 FlhB HrpN YscU SpaS Family DOO79_06630 PF01514 Secretory protein of YscJ/FliF family DOO79_06645 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOO79_06645 PF18269 T3SS EscN ATPase C-terminal domain DOO79_06645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOO79_06655 PF01311 Bacterial export proteins, family 1 DOO79_06660 PF03958 Bacterial type II/III secretion system short domain DOO79_06660 PF00263 Bacterial type II and III secretion system protein DOO79_06670 PF01464 Transglycosylase SLT domain DOO79_06685 PF00924 Mechanosensitive ion channel DOO79_06685 PF12795 Mechanosensitive ion channel porin domain DOO79_06685 PF12794 Mechanosensitive ion channel inner membrane domain 1 DOO79_06690 PF00884 Sulfatase DOO79_06700 PF03109 ABC1 family DOO79_06705 PF05661 Protein of unknown function (DUF808) DOO79_06710 PF00072 Response regulator receiver domain DOO79_06710 PF00990 Diguanylate cyclase, GGDEF domain DOO79_06715 PF08323 Starch synthase catalytic domain DOO79_06715 PF00534 Glycosyl transferases group 1 DOO79_06720 PF00128 Alpha amylase, catalytic domain DOO79_06720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOO79_06720 PF02806 Alpha amylase, C-terminal all-beta domain DOO79_06725 PF00128 Alpha amylase, catalytic domain DOO79_06725 PF11941 Domain of unknown function (DUF3459) DOO79_06725 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOO79_06730 PF02446 4-alpha-glucanotransferase DOO79_06735 PF00128 Alpha amylase, catalytic domain DOO79_06745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOO79_06745 PF00128 Alpha amylase, catalytic domain DOO79_06750 PF13460 NAD(P)H-binding DOO79_06770 PF06903 VirK protein DOO79_06775 PF02321 Outer membrane efflux protein DOO79_06790 PF00873 AcrB/AcrD/AcrF family DOO79_06810 PF00271 Helicase conserved C-terminal domain DOO79_06810 PF00270 DEAD/DEAH box helicase DOO79_06815 PF02817 e3 binding domain DOO79_06815 PF00364 Biotin-requiring enzyme DOO79_06815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOO79_06825 PF02779 Transketolase, pyrimidine binding domain DOO79_06825 PF02780 Transketolase, C-terminal domain DOO79_06830 PF00676 Dehydrogenase E1 component DOO79_06845 PF03301 Tryptophan 2,3-dioxygenase DOO79_06850 PF00854 POT family DOO79_06860 PF01047 MarR family DOO79_06865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOO79_06875 PF04209 homogentisate 1,2-dioxygenase DOO79_06895 PF03334 Na+/H+ antiporter subunit DOO79_06900 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DOO79_06910 PF00361 Proton-conducting membrane transporter DOO79_06915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DOO79_06920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOO79_06920 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DOO79_06920 PF13244 Domain of unknown function (DUF4040) DOO79_06920 PF00361 Proton-conducting membrane transporter DOO79_06935 PF07504 Fungalysin/Thermolysin Propeptide Motif DOO79_06935 PF02868 Thermolysin metallopeptidase, alpha-helical domain DOO79_06935 PF01483 Proprotein convertase P-domain DOO79_06935 PF01447 Thermolysin metallopeptidase, catalytic domain DOO79_06945 PF00182 Chitinase class I DOO79_06965 PF01259 SAICAR synthetase DOO79_06970 PF05099 Tellurite resistance protein TerB DOO79_06970 PF00226 DnaJ domain DOO79_06980 PF00834 Ribulose-phosphate 3 epimerase family DOO79_06985 PF00583 Acetyltransferase (GNAT) family DOO79_06990 PF00781 Diacylglycerol kinase catalytic domain DOO79_06995 PF00425 chorismate binding enzyme DOO79_06995 PF04715 Anthranilate synthase component I, N terminal region DOO79_07005 PF00117 Glutamine amidotransferase class-I DOO79_07015 PF02885 Glycosyl transferase family, helical bundle domain DOO79_07015 PF00591 Glycosyl transferase family, a/b domain DOO79_07020 PF00218 Indole-3-glycerol phosphate synthase DOO79_07030 PF00027 Cyclic nucleotide-binding domain DOO79_07030 PF00325 Bacterial regulatory proteins, crp family DOO79_07035 PF02675 S-adenosylmethionine decarboxylase DOO79_07040 PF00893 Small Multidrug Resistance protein DOO79_07045 PF03232 Ubiquinone biosynthesis protein COQ7 DOO79_07050 PF00572 Ribosomal protein L13 DOO79_07055 PF00380 Ribosomal protein S9/S16 DOO79_07070 PF00293 NUDIX domain DOO79_07080 PF00210 Ferritin-like domain DOO79_07085 PF00512 His Kinase A (phospho-acceptor) domain DOO79_07085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOO79_07085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_07085 PF00072 Response regulator receiver domain DOO79_07085 PF01627 Hpt domain DOO79_07085 PF00672 HAMP domain DOO79_07090 PF00072 Response regulator receiver domain DOO79_07090 PF00486 Transcriptional regulatory protein, C terminal DOO79_07110 PF01521 Iron-sulphur cluster biosynthesis DOO79_07125 PF09297 NADH pyrophosphatase zinc ribbon domain DOO79_07125 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DOO79_07125 PF00293 NUDIX domain DOO79_07130 PF03186 CobD/Cbib protein DOO79_07130 PF17113 Regulatory signalling modulator protein AmpE DOO79_07150 PF07690 Major Facilitator Superfamily DOO79_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_07155 PF03466 LysR substrate binding domain DOO79_07160 PF07690 Major Facilitator Superfamily DOO79_07165 PF12805 FUSC-like inner membrane protein yccS DOO79_07175 PF02843 Phosphoribosylglycinamide synthetase, C domain DOO79_07175 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DOO79_07175 PF02844 Phosphoribosylglycinamide synthetase, N domain DOO79_07185 PF02142 MGS-like domain DOO79_07185 PF01808 AICARFT/IMPCHase bienzyme DOO79_07190 PF01066 CDP-alcohol phosphatidyltransferase DOO79_07195 PF12147 Putative methyltransferase DOO79_07195 PF12146 Serine aminopeptidase, S33 DOO79_07200 PF00782 Dual specificity phosphatase, catalytic domain DOO79_07230 PF02954 Bacterial regulatory protein, Fis family DOO79_07245 PF01381 Helix-turn-helix DOO79_07275 PF02785 Biotin carboxylase C-terminal domain DOO79_07275 PF00289 Biotin carboxylase, N-terminal domain DOO79_07275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOO79_07285 PF00364 Biotin-requiring enzyme DOO79_07290 PF01220 Dehydroquinase class II DOO79_07295 PF11412 Disulphide bond corrector protein DsbC DOO79_07295 PF02683 Cytochrome C biogenesis protein transmembrane region DOO79_07300 PF03091 CutA1 divalent ion tolerance protein DOO79_07315 PF01852 START domain DOO79_07330 PF00106 short chain dehydrogenase DOO79_07340 PF04231 Endonuclease I DOO79_07345 PF00166 Chaperonin 10 Kd subunit DOO79_07350 PF00118 TCP-1/cpn60 chaperonin family DOO79_07360 PF00593 TonB dependent receptor DOO79_07360 PF07715 TonB-dependent Receptor Plug Domain DOO79_07365 PF00793 DAHP synthetase I family DOO79_07380 PF08450 SMP-30/Gluconolactonase/LRE-like region DOO79_07395 PF02592 Putative vitamin uptake transporter DOO79_07415 PF00881 Nitroreductase family DOO79_07420 PF04264 YceI-like domain DOO79_07445 PF16957 Malonate decarboxylase, alpha subunit, transporter DOO79_07450 PF06857 Malonate decarboxylase delta subunit (MdcD) DOO79_07455 PF01039 Carboxyl transferase domain DOO79_07465 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DOO79_07485 PF00392 Bacterial regulatory proteins, gntR family DOO79_07485 PF07729 FCD domain DOO79_07490 PF13419 Haloacid dehalogenase-like hydrolase DOO79_07520 PF07745 Glycosyl hydrolase family 53 DOO79_07525 PF00456 Transketolase, thiamine diphosphate binding domain DOO79_07525 PF17831 Pyruvate dehydrogenase E1 component middle domain DOO79_07560 PF00106 short chain dehydrogenase DOO79_07575 PF00106 short chain dehydrogenase DOO79_07590 PF13409 Glutathione S-transferase, N-terminal domain DOO79_07615 PF12823 Domain of unknown function (DUF3817) DOO79_07615 PF03176 MMPL family DOO79_07625 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DOO79_07625 PF00326 Prolyl oligopeptidase family DOO79_07635 PF07759 Protein of unknown function (DUF1615) DOO79_07645 PF05230 MASE2 domain DOO79_07645 PF00990 Diguanylate cyclase, GGDEF domain DOO79_07670 PF00892 EamA-like transporter family DOO79_07675 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOO79_07685 PF00324 Amino acid permease DOO79_07695 PF01544 CorA-like Mg2+ transporter protein DOO79_07705 PF01204 Trehalase DOO79_07755 PF00563 EAL domain DOO79_07755 PF00990 Diguanylate cyclase, GGDEF domain DOO79_07755 PF08447 PAS fold DOO79_07755 PF08448 PAS fold DOO79_07765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_07765 PF00672 HAMP domain DOO79_07765 PF02203 Tar ligand binding domain homologue DOO79_07770 PF00150 Cellulase (glycosyl hydrolase family 5) DOO79_07770 PF00553 Cellulose binding domain DOO79_07775 PF00916 Sulfate permease family DOO79_07775 PF01740 STAS domain DOO79_07785 PF08448 PAS fold DOO79_07785 PF00990 Diguanylate cyclase, GGDEF domain DOO79_07805 PF13632 Glycosyl transferase family group 2 DOO79_07815 PF06580 Histidine kinase DOO79_07815 PF07694 5TMR of 5TMR-LYT DOO79_07820 PF00072 Response regulator receiver domain DOO79_07820 PF04397 LytTr DNA-binding domain DOO79_07825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DOO79_07825 PF03900 Porphobilinogen deaminase, C-terminal domain DOO79_07865 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DOO79_07865 PF00326 Prolyl oligopeptidase family DOO79_07875 PF00155 Aminotransferase class I and II DOO79_07880 PF00326 Prolyl oligopeptidase family DOO79_07880 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DOO79_07885 PF04304 Protein of unknown function (DUF454) DOO79_07895 PF01678 Diaminopimelate epimerase DOO79_07905 PF00589 Phage integrase family DOO79_07905 PF02899 Phage integrase, N-terminal SAM-like domain DOO79_07910 PF00227 Proteasome subunit DOO79_07915 PF10431 C-terminal, D2-small domain, of ClpB protein DOO79_07915 PF00004 ATPase family associated with various cellular activities (AAA) DOO79_07915 PF07724 AAA domain (Cdc48 subfamily) DOO79_07925 PF13673 Acetyltransferase (GNAT) domain DOO79_07930 PF13533 Biotin-lipoyl like DOO79_07940 PF01209 ubiE/COQ5 methyltransferase family DOO79_07945 PF17156 Gammaproteobacterial periplasmic sensor domain DOO79_07945 PF00990 Diguanylate cyclase, GGDEF domain DOO79_07950 PF01433 Peptidase family M1 domain DOO79_07950 PF11838 ERAP1-like C-terminal domain DOO79_07985 PF03193 RsgA GTPase DOO79_08000 PF00128 Alpha amylase, catalytic domain DOO79_08015 PF00356 Bacterial regulatory proteins, lacI family DOO79_08020 PF00106 short chain dehydrogenase DOO79_08025 PF03600 Citrate transporter DOO79_08040 PF00486 Transcriptional regulatory protein, C terminal DOO79_08040 PF00072 Response regulator receiver domain DOO79_08045 PF00512 His Kinase A (phospho-acceptor) domain DOO79_08045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_08045 PF08521 Two-component sensor kinase N-terminal DOO79_08060 PF00072 Response regulator receiver domain DOO79_08060 PF00196 Bacterial regulatory proteins, luxR family DOO79_08080 PF00248 Aldo/keto reductase family DOO79_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_08090 PF03466 LysR substrate binding domain DOO79_08100 PF07690 Major Facilitator Superfamily DOO79_08110 PF00512 His Kinase A (phospho-acceptor) domain DOO79_08110 PF02743 Cache domain DOO79_08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_08120 PF00375 Sodium:dicarboxylate symporter family DOO79_08125 PF00390 Malic enzyme, N-terminal domain DOO79_08125 PF03949 Malic enzyme, NAD binding domain DOO79_08125 PF01515 Phosphate acetyl/butaryl transferase DOO79_08150 PF03279 Bacterial lipid A biosynthesis acyltransferase DOO79_08155 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DOO79_08160 PF02321 Outer membrane efflux protein DOO79_08175 PF00990 Diguanylate cyclase, GGDEF domain DOO79_08175 PF17151 Periplasmic sensor domain DOO79_08180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_08185 PF00330 Aconitase family (aconitate hydratase) DOO79_08190 PF00694 Aconitase C-terminal domain DOO79_08195 PF00180 Isocitrate/isopropylmalate dehydrogenase DOO79_08200 PF00682 HMGL-like DOO79_08200 PF08502 LeuA allosteric (dimerisation) domain DOO79_08205 PF00291 Pyridoxal-phosphate dependent enzyme DOO79_08215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOO79_08215 PF00205 Thiamine pyrophosphate enzyme, central domain DOO79_08215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOO79_08220 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DOO79_08220 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DOO79_08230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_08230 PF00672 HAMP domain DOO79_08230 PF02203 Tar ligand binding domain homologue DOO79_08235 PF00593 TonB dependent receptor DOO79_08235 PF07715 TonB-dependent Receptor Plug Domain DOO79_08245 PF13667 ThiC-associated domain DOO79_08245 PF01964 Radical SAM ThiC family DOO79_08250 PF18500 CadC C-terminal domain 1 DOO79_08250 PF00486 Transcriptional regulatory protein, C terminal DOO79_08255 PF12833 Helix-turn-helix domain DOO79_08280 PF00719 Inorganic pyrophosphatase DOO79_08290 PF03030 Inorganic H+ pyrophosphatase DOO79_08320 PF01225 Mur ligase family, catalytic domain DOO79_08320 PF02875 Mur ligase family, glutamate ligase domain DOO79_08320 PF08245 Mur ligase middle domain DOO79_08330 PF01062 Bestrophin, RFP-TM, chloride channel DOO79_08335 PF01569 PAP2 superfamily DOO79_08355 PF00520 Ion transport protein DOO79_08355 PF00027 Cyclic nucleotide-binding domain DOO79_08360 PF00202 Aminotransferase class-III DOO79_08375 PF01593 Flavin containing amine oxidoreductase DOO79_08380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DOO79_08380 PF00034 Cytochrome c DOO79_08390 PF00155 Aminotransferase class I and II DOO79_08395 PF00127 Copper binding proteins, plastocyanin/azurin family DOO79_08400 PF17874 MalT-like TPR region DOO79_08400 PF00196 Bacterial regulatory proteins, luxR family DOO79_08405 PF00202 Aminotransferase class-III DOO79_08420 PF02581 Thiamine monophosphate synthase DOO79_08425 PF00301 Rubredoxin DOO79_08430 PF13369 Transglutaminase-like superfamily DOO79_08440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DOO79_08450 PF01812 5-formyltetrahydrofolate cyclo-ligase family DOO79_08460 PF05164 Cell division protein ZapA DOO79_08470 PF03695 Uncharacterised protein family (UPF0149) DOO79_08475 PF00557 Metallopeptidase family M24 DOO79_08475 PF05195 Aminopeptidase P, N-terminal domain DOO79_08485 PF00557 Metallopeptidase family M24 DOO79_08500 PF06969 HemN C-terminal domain DOO79_08500 PF04055 Radical SAM superfamily DOO79_08505 PF01725 Ham1 family DOO79_08515 PF03725 3' exoribonuclease family, domain 2 DOO79_08515 PF01138 3' exoribonuclease family, domain 1 DOO79_08520 PF08340 Domain of unknown function (DUF1732) DOO79_08520 PF03755 YicC-like family, N-terminal region DOO79_08525 PF00625 Guanylate kinase DOO79_08530 PF01192 RNA polymerase Rpb6 DOO79_08535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOO79_08535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOO79_08545 PF00005 ABC transporter DOO79_08545 PF08402 TOBE domain DOO79_08550 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_08555 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_08560 PF04966 Carbohydrate-selective porin, OprB family DOO79_08575 PF04198 Putative sugar-binding domain DOO79_08580 PF13419 Haloacid dehalogenase-like hydrolase DOO79_08585 PF13291 ACT domain DOO79_08585 PF02824 TGS domain DOO79_08585 PF04607 Region found in RelA / SpoT proteins DOO79_08590 PF01042 Endoribonuclease L-PSP DOO79_08595 PF00271 Helicase conserved C-terminal domain DOO79_08595 PF17191 RecG wedge domain DOO79_08595 PF00270 DEAD/DEAH box helicase DOO79_08600 PF01156 Inosine-uridine preferring nucleoside hydrolase DOO79_08605 PF01197 Ribosomal protein L31 DOO79_08610 PF00285 Citrate synthase, C-terminal domain DOO79_08625 PF17092 Penicillin-binding protein OB-like domain DOO79_08625 PF00912 Transglycosylase DOO79_08625 PF00905 Penicillin binding protein transpeptidase domain DOO79_08655 PF07726 ATPase family associated with various cellular activities (AAA) DOO79_08655 PF17863 AAA lid domain DOO79_08675 PF07584 Aerotolerance regulator N-terminal DOO79_08675 PF00092 von Willebrand factor type A domain DOO79_08690 PF00375 Sodium:dicarboxylate symporter family DOO79_08695 PF00456 Transketolase, thiamine diphosphate binding domain DOO79_08695 PF02780 Transketolase, C-terminal domain DOO79_08695 PF02779 Transketolase, pyrimidine binding domain DOO79_08700 PF12146 Serine aminopeptidase, S33 DOO79_08705 PF00593 TonB dependent receptor DOO79_08705 PF07715 TonB-dependent Receptor Plug Domain DOO79_08715 PF04225 Opacity-associated protein A LysM-like domain DOO79_08715 PF01551 Peptidase family M23 DOO79_08725 PF03734 L,D-transpeptidase catalytic domain DOO79_08725 PF01476 LysM domain DOO79_08760 PF03459 TOBE domain DOO79_08760 PF00005 ABC transporter DOO79_08765 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_08775 PF04273 Putative phosphatase (DUF442) DOO79_08775 PF00753 Metallo-beta-lactamase superfamily DOO79_08785 PF03922 OmpW family DOO79_08790 PF03922 OmpW family DOO79_08800 PF05598 Transposase domain (DUF772) DOO79_08805 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOO79_08805 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOO79_08830 PF00162 Phosphoglycerate kinase DOO79_08840 PF02887 Pyruvate kinase, alpha/beta domain DOO79_08840 PF00224 Pyruvate kinase, barrel domain DOO79_08850 PF00274 Fructose-bisphosphate aldolase class-I DOO79_08855 PF01661 Macro domain DOO79_08865 PF00291 Pyridoxal-phosphate dependent enzyme DOO79_08875 PF03466 LysR substrate binding domain DOO79_08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_08890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_08890 PF00512 His Kinase A (phospho-acceptor) domain DOO79_08890 PF01627 Hpt domain DOO79_08890 PF00072 Response regulator receiver domain DOO79_08910 PF01507 Phosphoadenosine phosphosulfate reductase family DOO79_08915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOO79_08915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOO79_08920 PF00667 FAD binding domain DOO79_08920 PF00175 Oxidoreductase NAD-binding domain DOO79_08920 PF00258 Flavodoxin DOO79_08925 PF01507 Phosphoadenosine phosphosulfate reductase family DOO79_08930 PF00009 Elongation factor Tu GTP binding domain DOO79_08935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_08935 PF00529 HlyD membrane-fusion protein of T1SS DOO79_08940 PF00873 AcrB/AcrD/AcrF family DOO79_08990 PF00588 SpoU rRNA Methylase family DOO79_08990 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOO79_08995 PF00135 Carboxylesterase family DOO79_09005 PF14508 Glycosyl-hydrolase 97 N-terminal DOO79_09005 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DOO79_09005 PF10566 Glycoside hydrolase 97 DOO79_09010 PF00703 Glycosyl hydrolases family 2 DOO79_09010 PF02837 Glycosyl hydrolases family 2, sugar binding domain DOO79_09010 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain DOO79_09020 PF00356 Bacterial regulatory proteins, lacI family DOO79_09030 PF01741 Large-conductance mechanosensitive channel, MscL DOO79_09035 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOO79_09055 PF02080 TrkA-C domain DOO79_09055 PF03600 Citrate transporter DOO79_09060 PF02390 Putative methyltransferase DOO79_09070 PF05690 Thiazole biosynthesis protein ThiG DOO79_09080 PF03797 Autotransporter beta-domain DOO79_09080 PF00657 GDSL-like Lipase/Acylhydrolase DOO79_09110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOO79_09110 PF00128 Alpha amylase, catalytic domain DOO79_09115 PF18030 RimK PreATP-grasp domain DOO79_09115 PF08443 RimK-like ATP-grasp domain DOO79_09125 PF00486 Transcriptional regulatory protein, C terminal DOO79_09125 PF00072 Response regulator receiver domain DOO79_09130 PF00512 His Kinase A (phospho-acceptor) domain DOO79_09130 PF16736 Single Cache-like DOO79_09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_09130 PF00989 PAS fold DOO79_09240 PF00034 Cytochrome c DOO79_09240 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DOO79_09240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DOO79_09250 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_09250 PF00107 Zinc-binding dehydrogenase DOO79_09260 PF01590 GAF domain DOO79_09260 PF02954 Bacterial regulatory protein, Fis family DOO79_09260 PF00158 Sigma-54 interaction domain DOO79_09265 PF00294 pfkB family carbohydrate kinase DOO79_09275 PF04085 rod shape-determining protein MreC DOO79_09285 PF00905 Penicillin binding protein transpeptidase domain DOO79_09285 PF03717 Penicillin-binding Protein dimerisation domain DOO79_09290 PF01098 Cell cycle protein DOO79_09295 PF00295 Glycosyl hydrolases family 28 DOO79_09305 PF13406 Transglycosylase SLT domain DOO79_09310 PF03330 Lytic transglycolase DOO79_09310 PF05036 Sporulation related domain DOO79_09320 PF07943 Penicillin-binding protein 5, C-terminal domain DOO79_09320 PF00768 D-alanyl-D-alanine carboxypeptidase DOO79_09330 PF04359 Protein of unknown function (DUF493) DOO79_09335 PF03099 Biotin/lipoate A/B protein ligase family DOO79_09340 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DOO79_09340 PF04055 Radical SAM superfamily DOO79_09345 PF11818 C-terminal domain of tail specific protease (DUF3340) DOO79_09345 PF17804 Tail specific protease N-terminal domain DOO79_09345 PF03572 Peptidase family S41 DOO79_09345 PF00595 PDZ domain DOO79_09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_09355 PF03466 LysR substrate binding domain DOO79_09365 PF00293 NUDIX domain DOO79_09365 PF01467 Cytidylyltransferase-like DOO79_09400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOO79_09400 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DOO79_09405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOO79_09405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOO79_09410 PF04972 BON domain DOO79_09415 PF01590 GAF domain DOO79_09415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_09415 PF00512 His Kinase A (phospho-acceptor) domain DOO79_09415 PF08446 PAS fold DOO79_09415 PF00360 Phytochrome region DOO79_09420 PF00072 Response regulator receiver domain DOO79_09425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_09425 PF00512 His Kinase A (phospho-acceptor) domain DOO79_09430 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DOO79_09435 PF00106 short chain dehydrogenase DOO79_09480 PF03958 Bacterial type II/III secretion system short domain DOO79_09480 PF00263 Bacterial type II and III secretion system protein DOO79_09485 PF00437 Type II/IV secretion system protein DOO79_09490 PF00482 Type II secretion system (T2SS), protein F DOO79_09495 PF07963 Prokaryotic N-terminal methylation motif DOO79_09495 PF08334 Type II secretion system (T2SS), protein G DOO79_09500 PF07963 Prokaryotic N-terminal methylation motif DOO79_09500 PF12019 Type II transport protein GspH DOO79_09505 PF02501 Type II secretion system (T2SS), protein I DOO79_09505 PF07963 Prokaryotic N-terminal methylation motif DOO79_09510 PF11612 Type II secretion system (T2SS), protein J DOO79_09510 PF07963 Prokaryotic N-terminal methylation motif DOO79_09515 PF03934 Type II secretion system (T2SS), protein K DOO79_09540 PF02837 Glycosyl hydrolases family 2, sugar binding domain DOO79_09540 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DOO79_09540 PF00703 Glycosyl hydrolases family 2 DOO79_09540 PF16355 Domain of unknown function (DUF4982) DOO79_09540 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DOO79_09555 PF07702 UTRA domain DOO79_09555 PF00392 Bacterial regulatory proteins, gntR family DOO79_09560 PF07690 Major Facilitator Superfamily DOO79_09565 PF00356 Bacterial regulatory proteins, lacI family DOO79_09570 PF01380 SIS domain DOO79_09575 PF01979 Amidohydrolase family DOO79_09585 PF01743 Poly A polymerase head domain DOO79_09585 PF01966 HD domain DOO79_09585 PF12627 Probable RNA and SrmB- binding site of polymerase A DOO79_09590 PF05199 GMC oxidoreductase DOO79_09590 PF00732 GMC oxidoreductase DOO79_09595 PF00171 Aldehyde dehydrogenase family DOO79_09600 PF02028 BCCT, betaine/carnitine/choline family transporter DOO79_09615 PF01323 DSBA-like thioredoxin domain DOO79_09625 PF00034 Cytochrome c DOO79_09630 PF01926 50S ribosome-binding GTPase DOO79_09635 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DOO79_09635 PF00753 Metallo-beta-lactamase superfamily DOO79_09635 PF10996 Beta-Casp domain DOO79_09650 PF04107 Glutamate-cysteine ligase family 2(GCS2) DOO79_09655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_09655 PF00672 HAMP domain DOO79_09655 PF00512 His Kinase A (phospho-acceptor) domain DOO79_09660 PF00072 Response regulator receiver domain DOO79_09660 PF00486 Transcriptional regulatory protein, C terminal DOO79_09675 PF02583 Metal-sensitive transcriptional repressor DOO79_09680 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_09680 PF00107 Zinc-binding dehydrogenase DOO79_09685 PF04828 Glutathione-dependent formaldehyde-activating enzyme DOO79_09690 PF00756 Putative esterase DOO79_09700 PF00155 Aminotransferase class I and II DOO79_09700 PF00392 Bacterial regulatory proteins, gntR family DOO79_09705 PF02567 Phenazine biosynthesis-like protein DOO79_09710 PF00892 EamA-like transporter family DOO79_09720 PF12848 ABC transporter DOO79_09720 PF00005 ABC transporter DOO79_09730 PF00464 Serine hydroxymethyltransferase DOO79_09735 PF03477 ATP cone domain DOO79_09745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOO79_09745 PF01872 RibD C-terminal domain DOO79_09755 PF00677 Lumazine binding domain DOO79_09760 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DOO79_09760 PF00925 GTP cyclohydrolase II DOO79_09765 PF00885 6,7-dimethyl-8-ribityllumazine synthase DOO79_09770 PF01029 NusB family DOO79_09775 PF00586 AIR synthase related protein, N-terminal domain DOO79_09775 PF02769 AIR synthase related protein, C-terminal domain DOO79_09800 PF03814 Potassium-transporting ATPase A subunit DOO79_09810 PF02669 K+-transporting ATPase, c chain DOO79_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_09815 PF13492 GAF domain DOO79_09815 PF13493 Domain of unknown function (DUF4118) DOO79_09815 PF00512 His Kinase A (phospho-acceptor) domain DOO79_09815 PF02702 Osmosensitive K+ channel His kinase sensor domain DOO79_09820 PF00486 Transcriptional regulatory protein, C terminal DOO79_09820 PF00072 Response regulator receiver domain DOO79_09850 PF01565 FAD binding domain DOO79_09850 PF02913 FAD linked oxidases, C-terminal domain DOO79_09855 PF04307 LexA-binding, inner membrane-associated putative hydrolase DOO79_09860 PF02021 Uncharacterised protein family UPF0102 DOO79_09870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOO79_09895 PF02381 MraZ protein, putative antitoxin-like DOO79_09900 PF01795 MraW methylase family DOO79_09905 PF04999 Cell division protein FtsL DOO79_09910 PF00905 Penicillin binding protein transpeptidase domain DOO79_09910 PF03717 Penicillin-binding Protein dimerisation domain DOO79_09915 PF01225 Mur ligase family, catalytic domain DOO79_09915 PF02875 Mur ligase family, glutamate ligase domain DOO79_09915 PF08245 Mur ligase middle domain DOO79_09920 PF01225 Mur ligase family, catalytic domain DOO79_09920 PF08245 Mur ligase middle domain DOO79_09920 PF02875 Mur ligase family, glutamate ligase domain DOO79_09925 PF00953 Glycosyl transferase family 4 DOO79_09930 PF01098 Cell cycle protein DOO79_09935 PF04101 Glycosyltransferase family 28 C-terminal domain DOO79_09935 PF03033 Glycosyltransferase family 28 N-terminal domain DOO79_09940 PF08245 Mur ligase middle domain DOO79_09940 PF02875 Mur ligase family, glutamate ligase domain DOO79_09940 PF01225 Mur ligase family, catalytic domain DOO79_09945 PF01820 D-ala D-ala ligase N-terminus DOO79_09945 PF07478 D-ala D-ala ligase C-terminus DOO79_09950 PF03799 Cell division protein FtsQ DOO79_09950 PF08478 POTRA domain, FtsQ-type DOO79_09955 PF02491 SHS2 domain inserted in FTSA DOO79_09960 PF00091 Tubulin/FtsZ family, GTPase domain DOO79_09960 PF12327 FtsZ family, C-terminal domain DOO79_09965 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DOO79_09980 PF01043 SecA preprotein cross-linking domain DOO79_09980 PF07517 SecA DEAD-like domain DOO79_09980 PF02810 SEC-C motif DOO79_09980 PF07516 SecA Wing and Scaffold domain DOO79_09985 PF00293 NUDIX domain DOO79_09995 PF02219 Methylenetetrahydrofolate reductase DOO79_10010 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_10010 PF00107 Zinc-binding dehydrogenase DOO79_10010 PF16197 Ketoacyl-synthetase C-terminal extension DOO79_10010 PF00109 Beta-ketoacyl synthase, N-terminal domain DOO79_10010 PF02801 Beta-ketoacyl synthase, C-terminal domain DOO79_10010 PF08659 KR domain DOO79_10010 PF00550 Phosphopantetheine attachment site DOO79_10010 PF14765 Polyketide synthase dehydratase DOO79_10010 PF00698 Acyl transferase domain DOO79_10015 PF09286 Pro-kumamolisin, activation domain DOO79_10015 PF00082 Subtilase family DOO79_10035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOO79_10040 PF00128 Alpha amylase, catalytic domain DOO79_10065 PF00685 Sulfotransferase domain DOO79_10075 PF13649 Methyltransferase domain DOO79_10080 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DOO79_10080 PF05221 S-adenosyl-L-homocysteine hydrolase DOO79_10090 PF00311 Phosphoenolpyruvate carboxylase DOO79_10135 PF00328 Histidine phosphatase superfamily (branch 2) DOO79_10140 PF02773 S-adenosylmethionine synthetase, C-terminal domain DOO79_10140 PF02772 S-adenosylmethionine synthetase, central domain DOO79_10140 PF00438 S-adenosylmethionine synthetase, N-terminal domain DOO79_10150 PF13649 Methyltransferase domain DOO79_10155 PF01207 Dihydrouridine synthase (Dus) DOO79_10165 PF00294 pfkB family carbohydrate kinase DOO79_10170 PF07670 Nucleoside recognition DOO79_10170 PF01773 Na+ dependent nucleoside transporter N-terminus DOO79_10170 PF07662 Na+ dependent nucleoside transporter C-terminus DOO79_10180 PF00248 Aldo/keto reductase family DOO79_10190 PF00593 TonB dependent receptor DOO79_10190 PF07715 TonB-dependent Receptor Plug Domain DOO79_10210 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_10215 PF00005 ABC transporter DOO79_10225 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DOO79_10235 PF00005 ABC transporter DOO79_10240 PF13472 GDSL-like Lipase/Acylhydrolase family DOO79_10245 PF00486 Transcriptional regulatory protein, C terminal DOO79_10245 PF00072 Response regulator receiver domain DOO79_10250 PF00512 His Kinase A (phospho-acceptor) domain DOO79_10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_10250 PF08521 Two-component sensor kinase N-terminal DOO79_10270 PF01219 Prokaryotic diacylglycerol kinase DOO79_10285 PF13091 PLD-like domain DOO79_10290 PF01339 CheB methylesterase DOO79_10290 PF00072 Response regulator receiver domain DOO79_10295 PF01739 CheR methyltransferase, SAM binding domain DOO79_10295 PF03705 CheR methyltransferase, all-alpha domain DOO79_10300 PF00563 EAL domain DOO79_10300 PF13426 PAS domain DOO79_10300 PF00990 Diguanylate cyclase, GGDEF domain DOO79_10305 PF01584 CheW-like domain DOO79_10310 PF00672 HAMP domain DOO79_10310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_10310 PF02203 Tar ligand binding domain homologue DOO79_10315 PF01627 Hpt domain DOO79_10315 PF01584 CheW-like domain DOO79_10315 PF09078 CheY binding DOO79_10315 PF02895 Signal transducing histidine kinase, homodimeric domain DOO79_10315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_10325 PF02559 CarD-like/TRCF domain DOO79_10325 PF17757 UvrB interaction domain DOO79_10325 PF03461 TRCF domain DOO79_10325 PF00271 Helicase conserved C-terminal domain DOO79_10325 PF00270 DEAD/DEAH box helicase DOO79_10335 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DOO79_10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_10345 PF00512 His Kinase A (phospho-acceptor) domain DOO79_10345 PF00672 HAMP domain DOO79_10350 PF01790 Prolipoprotein diacylglyceryl transferase DOO79_10360 PF06123 Inner membrane protein CreD DOO79_10385 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOO79_10390 PF01475 Ferric uptake regulator family DOO79_10400 PF00529 HlyD membrane-fusion protein of T1SS DOO79_10400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_10405 PF00873 AcrB/AcrD/AcrF family DOO79_10410 PF02321 Outer membrane efflux protein DOO79_10425 PF06719 AraC-type transcriptional regulator N-terminus DOO79_10425 PF12833 Helix-turn-helix domain DOO79_10435 PF03466 LysR substrate binding domain DOO79_10435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_10440 PF07690 Major Facilitator Superfamily DOO79_10465 PF00082 Subtilase family DOO79_10465 PF01483 Proprotein convertase P-domain DOO79_10475 PF00082 Subtilase family DOO79_10475 PF01483 Proprotein convertase P-domain DOO79_10485 PF00593 TonB dependent receptor DOO79_10485 PF07715 TonB-dependent Receptor Plug Domain DOO79_10510 PF00654 Voltage gated chloride channel DOO79_10520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOO79_10520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOO79_10525 PF06029 AlkA N-terminal domain DOO79_10525 PF00730 HhH-GPD superfamily base excision DNA repair protein DOO79_10570 PF03880 DbpA RNA binding domain DOO79_10570 PF00271 Helicase conserved C-terminal domain DOO79_10570 PF00270 DEAD/DEAH box helicase DOO79_10575 PF00563 EAL domain DOO79_10575 PF00990 Diguanylate cyclase, GGDEF domain DOO79_10575 PF08448 PAS fold DOO79_10580 PF01479 S4 domain DOO79_10580 PF00849 RNA pseudouridylate synthase DOO79_10585 PF00072 Response regulator receiver domain DOO79_10585 PF00990 Diguanylate cyclase, GGDEF domain DOO79_10605 PF03737 Aldolase/RraA DOO79_10610 PF00144 Beta-lactamase DOO79_10615 PF00999 Sodium/hydrogen exchanger family DOO79_10620 PF00512 His Kinase A (phospho-acceptor) domain DOO79_10620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_10620 PF00672 HAMP domain DOO79_10625 PF00486 Transcriptional regulatory protein, C terminal DOO79_10625 PF00072 Response regulator receiver domain DOO79_10630 PF02321 Outer membrane efflux protein DOO79_10645 PF00873 AcrB/AcrD/AcrF family DOO79_10660 PF00005 ABC transporter DOO79_10660 PF00664 ABC transporter transmembrane region DOO79_10700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOO79_10705 PF04070 Domain of unknown function (DUF378) DOO79_10745 PF00085 Thioredoxin DOO79_10770 PF01467 Cytidylyltransferase-like DOO79_10785 PF02590 Predicted SPOUT methyltransferase DOO79_10805 PF04402 Protein of unknown function (DUF541) DOO79_10810 PF02545 Maf-like protein DOO79_10815 PF00575 S1 RNA binding domain DOO79_10815 PF10150 Ribonuclease E/G family DOO79_10820 PF13502 AsmA-like C-terminal region DOO79_10820 PF13116 Protein of unknown function DOO79_10830 PF01523 Putative modulator of DNA gyrase DOO79_10835 PF04751 Protein of unknown function (DUF615) DOO79_10840 PF01523 Putative modulator of DNA gyrase DOO79_10855 PF03695 Uncharacterised protein family (UPF0149) DOO79_10855 PF02810 SEC-C motif DOO79_10885 PF00348 Polyprenyl synthetase DOO79_10890 PF02609 Exonuclease VII small subunit DOO79_10895 PF09179 TilS substrate binding domain DOO79_10895 PF11734 TilS substrate C-terminal domain DOO79_10895 PF01171 PP-loop family DOO79_10905 PF00245 Alkaline phosphatase DOO79_10910 PF00375 Sodium:dicarboxylate symporter family DOO79_10925 PF00877 NlpC/P60 family DOO79_10930 PF00877 NlpC/P60 family DOO79_10935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOO79_10940 PF04235 Protein of unknown function (DUF418) DOO79_10945 PF01266 FAD dependent oxidoreductase DOO79_10950 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_10950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOO79_10955 PF05598 Transposase domain (DUF772) DOO79_10960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOO79_10975 PF05649 Peptidase family M13 DOO79_10975 PF01431 Peptidase family M13 DOO79_10985 PF05649 Peptidase family M13 DOO79_10985 PF01431 Peptidase family M13 DOO79_11005 PF01526 Tn3 transposase DDE domain DOO79_11005 PF13700 Domain of unknown function (DUF4158) DOO79_11045 PF03527 RHS protein DOO79_11045 PF05593 RHS Repeat DOO79_11075 PF13683 Integrase core domain DOO79_11075 PF13276 HTH-like domain DOO79_11095 PF00703 Glycosyl hydrolases family 2 DOO79_11095 PF16355 Domain of unknown function (DUF4982) DOO79_11095 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DOO79_11095 PF02837 Glycosyl hydrolases family 2, sugar binding domain DOO79_11095 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DOO79_11100 PF07745 Glycosyl hydrolase family 53 DOO79_11110 PF06114 IrrE N-terminal-like domain DOO79_11110 PF09856 Predicted transcriptional regulator (DUF2083) DOO79_11110 PF01381 Helix-turn-helix DOO79_11115 PF00171 Aldehyde dehydrogenase family DOO79_11120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_11120 PF02770 Acyl-CoA dehydrogenase, middle domain DOO79_11120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_11125 PF00378 Enoyl-CoA hydratase/isomerase DOO79_11130 PF00378 Enoyl-CoA hydratase/isomerase DOO79_11130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOO79_11130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOO79_11140 PF01545 Cation efflux family DOO79_11145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOO79_11145 PF00378 Enoyl-CoA hydratase/isomerase DOO79_11145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOO79_11150 PF04542 Sigma-70 region 2 DOO79_11150 PF08281 Sigma-70, region 4 DOO79_11160 PF13180 PDZ domain DOO79_11165 PF00009 Elongation factor Tu GTP binding domain DOO79_11165 PF00679 Elongation factor G C-terminus DOO79_11165 PF06421 GTP-binding protein LepA C-terminus DOO79_11165 PF03144 Elongation factor Tu domain 2 DOO79_11170 PF10502 Signal peptidase, peptidase S26 DOO79_11180 PF14622 Ribonuclease-III-like DOO79_11180 PF00035 Double-stranded RNA binding motif DOO79_11185 PF01926 50S ribosome-binding GTPase DOO79_11185 PF07650 KH domain DOO79_11190 PF11967 Recombination protein O N terminal DOO79_11190 PF02565 Recombination protein O C terminal DOO79_11200 PF05958 tRNA (Uracil-5-)-methyltransferase DOO79_11210 PF01928 CYTH domain DOO79_11215 PF01323 DSBA-like thioredoxin domain DOO79_11220 PF01593 Flavin containing amine oxidoreductase DOO79_11225 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DOO79_11230 PF00933 Glycosyl hydrolase family 3 N terminal domain DOO79_11240 PF01048 Phosphorylase superfamily DOO79_11250 PF00313 'Cold-shock' DNA-binding domain DOO79_11265 PF08494 DEAD/H associated DOO79_11265 PF00270 DEAD/DEAH box helicase DOO79_11265 PF00271 Helicase conserved C-terminal domain DOO79_11270 PF04675 DNA ligase N terminus DOO79_11270 PF04679 ATP dependent DNA ligase C terminal region DOO79_11270 PF01068 ATP dependent DNA ligase domain DOO79_11280 PF01068 ATP dependent DNA ligase domain DOO79_11280 PF04675 DNA ligase N terminus DOO79_11280 PF04679 ATP dependent DNA ligase C terminal region DOO79_11310 PF00108 Thiolase, N-terminal domain DOO79_11310 PF02803 Thiolase, C-terminal domain DOO79_11320 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOO79_11320 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOO79_11335 PF01863 Protein of unknown function DUF45 DOO79_11340 PF07043 Protein of unknown function (DUF1328) DOO79_11350 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOO79_11370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOO79_11380 PF03831 PhnA domain DOO79_11380 PF08274 PhnA Zinc-Ribbon DOO79_11395 PF07690 Major Facilitator Superfamily DOO79_11425 PF09924 Uncharacterised conserved protein (DUF2156) DOO79_11425 PF03706 Lysylphosphatidylglycerol synthase TM region DOO79_11435 PF01042 Endoribonuclease L-PSP DOO79_11480 PF04545 Sigma-70, region 4 DOO79_11480 PF04542 Sigma-70 region 2 DOO79_11500 PF04060 Putative Fe-S cluster DOO79_11510 PF09334 tRNA synthetases class I (M) DOO79_11510 PF01588 Putative tRNA binding domain DOO79_11525 PF00005 ABC transporter DOO79_11525 PF13732 Domain of unknown function (DUF4162) DOO79_11530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOO79_11535 PF00324 Amino acid permease DOO79_11540 PF02574 Homocysteine S-methyltransferase DOO79_11550 PF02592 Putative vitamin uptake transporter DOO79_11570 PF03551 Transcriptional regulator PadR-like family DOO79_11605 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DOO79_11610 PF01336 OB-fold nucleic acid binding domain DOO79_11610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOO79_11610 PF14579 Helix-hairpin-helix motif DOO79_11610 PF02811 PHP domain DOO79_11610 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOO79_11615 PF01351 Ribonuclease HII DOO79_11620 PF02684 Lipid-A-disaccharide synthetase DOO79_11625 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DOO79_11625 PF00132 Bacterial transferase hexapeptide (six repeats) DOO79_11630 PF07977 FabA-like domain DOO79_11635 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DOO79_11635 PF00132 Bacterial transferase hexapeptide (six repeats) DOO79_11645 PF01103 Surface antigen DOO79_11645 PF07244 Surface antigen variable number repeat DOO79_11650 PF02163 Peptidase family M50 DOO79_11650 PF17820 PDZ domain DOO79_11655 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DOO79_11655 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DOO79_11655 PF13288 DXP reductoisomerase C-terminal domain DOO79_11665 PF01255 Putative undecaprenyl diphosphate synthase DOO79_11670 PF01765 Ribosome recycling factor DOO79_11675 PF00696 Amino acid kinase family DOO79_11680 PF00990 Diguanylate cyclase, GGDEF domain DOO79_11680 PF00072 Response regulator receiver domain DOO79_11685 PF00889 Elongation factor TS DOO79_11690 PF00318 Ribosomal protein S2 DOO79_11725 PF00557 Metallopeptidase family M24 DOO79_11730 PF08335 GlnD PII-uridylyltransferase DOO79_11730 PF01909 Nucleotidyltransferase domain DOO79_11730 PF01966 HD domain DOO79_11735 PF14602 Hexapeptide repeat of succinyl-transferase DOO79_11735 PF00132 Bacterial transferase hexapeptide (six repeats) DOO79_11735 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DOO79_11740 PF03960 ArsC family DOO79_11745 PF01546 Peptidase family M20/M25/M40 DOO79_11745 PF07687 Peptidase dimerisation domain DOO79_11750 PF00733 Asparagine synthase DOO79_11750 PF13537 Glutamine amidotransferase domain DOO79_11760 PF00593 TonB dependent receptor DOO79_11760 PF07715 TonB-dependent Receptor Plug Domain DOO79_11765 PF01804 Penicillin amidase DOO79_11770 PF00210 Ferritin-like domain DOO79_11785 PF00521 DNA gyrase/topoisomerase IV, subunit A DOO79_11785 PF03989 DNA gyrase C-terminal domain, beta-propeller DOO79_11800 PF02321 Outer membrane efflux protein DOO79_11805 PF00529 HlyD membrane-fusion protein of T1SS DOO79_11805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_11810 PF07690 Major Facilitator Superfamily DOO79_11820 PF14310 Fibronectin type III-like domain DOO79_11820 PF00933 Glycosyl hydrolase family 3 N terminal domain DOO79_11820 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOO79_11835 PF00854 POT family DOO79_11860 PF12802 MarR family DOO79_11865 PF01432 Peptidase family M3 DOO79_11875 PF00255 Glutathione peroxidase DOO79_11880 PF00970 Oxidoreductase FAD-binding domain DOO79_11880 PF00175 Oxidoreductase NAD-binding domain DOO79_11885 PF00005 ABC transporter DOO79_11890 PF05683 Fumarase C-terminus DOO79_11890 PF05681 Fumarate hydratase (Fumerase) DOO79_11905 PF00484 Carbonic anhydrase DOO79_11910 PF02253 Phospholipase A1 DOO79_11920 PF00313 'Cold-shock' DNA-binding domain DOO79_11935 PF00899 ThiF family DOO79_11940 PF01026 TatD related DNase DOO79_11955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_11955 PF02770 Acyl-CoA dehydrogenase, middle domain DOO79_11955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_11965 PF02798 Glutathione S-transferase, N-terminal domain DOO79_11965 PF00043 Glutathione S-transferase, C-terminal domain DOO79_11975 PF13537 Glutamine amidotransferase domain DOO79_11975 PF00733 Asparagine synthase DOO79_11980 PF03358 NADPH-dependent FMN reductase DOO79_11985 PF03796 DnaB-like helicase C terminal domain DOO79_11985 PF00772 DnaB-like helicase N terminal domain DOO79_11990 PF00875 DNA photolyase DOO79_11990 PF03441 FAD binding domain of DNA photolyase DOO79_12000 PF05736 OprF membrane domain DOO79_12000 PF00691 OmpA family DOO79_12010 PF03466 LysR substrate binding domain DOO79_12010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_12025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_12030 PF00873 AcrB/AcrD/AcrF family DOO79_12035 PF00106 short chain dehydrogenase DOO79_12040 PF02321 Outer membrane efflux protein DOO79_12045 PF00990 Diguanylate cyclase, GGDEF domain DOO79_12045 PF08448 PAS fold DOO79_12055 PF00990 Diguanylate cyclase, GGDEF domain DOO79_12080 PF00082 Subtilase family DOO79_12085 PF01668 SmpB protein DOO79_12090 PF03364 Polyketide cyclase / dehydrase and lipid transport DOO79_12095 PF03658 RnfH family Ubiquitin DOO79_12100 PF04355 SmpA / OmlA family DOO79_12105 PF01475 Ferric uptake regulator family DOO79_12110 PF02463 RecF/RecN/SMC N terminal domain DOO79_12115 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DOO79_12115 PF01628 HrcA protein C terminal domain DOO79_12120 PF01025 GrpE DOO79_12125 PF00012 Hsp70 protein DOO79_12130 PF01556 DnaJ C terminal domain DOO79_12130 PF00226 DnaJ domain DOO79_12130 PF00684 DnaJ central domain DOO79_12140 PF08543 Phosphomethylpyrimidine kinase DOO79_12165 PF00664 ABC transporter transmembrane region DOO79_12165 PF00005 ABC transporter DOO79_12165 PF03412 Peptidase C39 family DOO79_12170 PF03466 LysR substrate binding domain DOO79_12170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_12175 PF00005 ABC transporter DOO79_12175 PF00664 ABC transporter transmembrane region DOO79_12180 PF01205 Uncharacterized protein family UPF0029 DOO79_12185 PF03641 Possible lysine decarboxylase DOO79_12190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOO79_12190 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_12195 PF02817 e3 binding domain DOO79_12195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOO79_12195 PF00364 Biotin-requiring enzyme DOO79_12200 PF02779 Transketolase, pyrimidine binding domain DOO79_12200 PF16870 2-oxoglutarate dehydrogenase C-terminal DOO79_12200 PF16078 2-oxoglutarate dehydrogenase N-terminus DOO79_12200 PF00676 Dehydrogenase E1 component DOO79_12210 PF08007 Cupin superfamily protein DOO79_12220 PF08328 Adenylosuccinate lyase C-terminal DOO79_12220 PF00206 Lyase DOO79_12230 PF03471 Transporter associated domain DOO79_12230 PF00571 CBS domain DOO79_12230 PF01595 Cyclin M transmembrane N-terminal domain DOO79_12235 PF10415 Fumarase C C-terminus DOO79_12235 PF00206 Lyase DOO79_12260 PF00005 ABC transporter DOO79_12265 PF00392 Bacterial regulatory proteins, gntR family DOO79_12275 PF00255 Glutathione peroxidase DOO79_12280 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DOO79_12280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOO79_12285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOO79_12285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOO79_12285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOO79_12290 PF04102 SlyX DOO79_12305 PF00356 Bacterial regulatory proteins, lacI family DOO79_12310 PF07690 Major Facilitator Superfamily DOO79_12315 PF00294 pfkB family carbohydrate kinase DOO79_12340 PF00809 Pterin binding enzyme DOO79_12340 PF02574 Homocysteine S-methyltransferase DOO79_12345 PF01209 ubiE/COQ5 methyltransferase family DOO79_12350 PF02770 Acyl-CoA dehydrogenase, middle domain DOO79_12350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_12350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_12355 PF02770 Acyl-CoA dehydrogenase, middle domain DOO79_12355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_12355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_12375 PF00575 S1 RNA binding domain DOO79_12375 PF17876 Cold shock domain DOO79_12375 PF00773 RNB domain DOO79_12375 PF08206 Ribonuclease B OB domain DOO79_12375 PF08461 Ribonuclease R winged-helix domain DOO79_12385 PF00588 SpoU rRNA Methylase family DOO79_12385 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOO79_12390 PF00990 Diguanylate cyclase, GGDEF domain DOO79_12390 PF07694 5TMR of 5TMR-LYT DOO79_12395 PF00929 Exonuclease DOO79_12405 PF01895 PhoU domain DOO79_12410 PF00005 ABC transporter DOO79_12415 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_12420 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_12425 PF12849 PBP superfamily domain DOO79_12430 PF12849 PBP superfamily domain DOO79_12450 PF00916 Sulfate permease family DOO79_12450 PF01740 STAS domain DOO79_12455 PF00730 HhH-GPD superfamily base excision DNA repair protein DOO79_12455 PF00633 Helix-hairpin-helix motif DOO79_12455 PF10576 Iron-sulfur binding domain of endonuclease III DOO79_12465 PF00378 Enoyl-CoA hydratase/isomerase DOO79_12470 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DOO79_12470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOO79_12475 PF00293 NUDIX domain DOO79_12480 PF00581 Rhodanese-like domain DOO79_12525 PF01513 ATP-NAD kinase DOO79_12550 PF08411 Exonuclease C-terminal DOO79_12550 PF00929 Exonuclease DOO79_12560 PF01494 FAD binding domain DOO79_12565 PF00266 Aminotransferase class-V DOO79_12575 PF06052 3-hydroxyanthranilic acid dioxygenase DOO79_12580 PF00484 Carbonic anhydrase DOO79_12625 PF00196 Bacterial regulatory proteins, luxR family DOO79_12625 PF00072 Response regulator receiver domain DOO79_12645 PF04299 Putative FMN-binding domain DOO79_12665 PF00152 tRNA synthetases class II (D, K and N) DOO79_12665 PF01336 OB-fold nucleic acid binding domain DOO79_12675 PF01521 Iron-sulphur cluster biosynthesis DOO79_12680 PF01250 Ribosomal protein S6 DOO79_12685 PF01084 Ribosomal protein S18 DOO79_12690 PF03948 Ribosomal protein L9, C-terminal domain DOO79_12690 PF01281 Ribosomal protein L9, N-terminal domain DOO79_12695 PF02463 RecF/RecN/SMC N terminal domain DOO79_12700 PF04354 ZipA, C-terminal FtsZ-binding domain DOO79_12710 PF00155 Aminotransferase class I and II DOO79_12715 PF03120 NAD-dependent DNA ligase OB-fold domain DOO79_12715 PF01653 NAD-dependent DNA ligase adenylation domain DOO79_12715 PF12826 Helix-hairpin-helix motif DOO79_12715 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DOO79_12715 PF00533 BRCA1 C Terminus (BRCT) domain DOO79_12720 PF00152 tRNA synthetases class II (D, K and N) DOO79_12735 PF01008 Initiation factor 2 subunit family DOO79_12740 PF00521 DNA gyrase/topoisomerase IV, subunit A DOO79_12740 PF03989 DNA gyrase C-terminal domain, beta-propeller DOO79_12745 PF13360 PQQ-like domain DOO79_12755 PF17391 Urocanase N-terminal domain DOO79_12755 PF17392 Urocanase C-terminal domain DOO79_12755 PF01175 Urocanase Rossmann-like domain DOO79_12765 PF00221 Aromatic amino acid lyase DOO79_12770 PF07969 Amidohydrolase family DOO79_12785 PF00392 Bacterial regulatory proteins, gntR family DOO79_12785 PF07702 UTRA domain DOO79_12810 PF01794 Ferric reductase like transmembrane component DOO79_12815 PF00174 Oxidoreductase molybdopterin binding domain DOO79_12820 PF00266 Aminotransferase class-V DOO79_12825 PF00800 Prephenate dehydratase DOO79_12825 PF01817 Chorismate mutase type II DOO79_12825 PF01842 ACT domain DOO79_12830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOO79_12840 PF03544 Gram-negative bacterial TonB protein C-terminal DOO79_12845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOO79_12845 PF02403 Seryl-tRNA synthetase N-terminal domain DOO79_12850 PF02525 Flavodoxin-like fold DOO79_12855 PF03466 LysR substrate binding domain DOO79_12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_12880 PF02203 Tar ligand binding domain homologue DOO79_12880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_12880 PF00672 HAMP domain DOO79_12885 PF01494 FAD binding domain DOO79_12900 PF13188 PAS domain DOO79_12900 PF08448 PAS fold DOO79_12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_12900 PF00512 His Kinase A (phospho-acceptor) domain DOO79_12900 PF00072 Response regulator receiver domain DOO79_12905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOO79_12905 PF00512 His Kinase A (phospho-acceptor) domain DOO79_12905 PF00672 HAMP domain DOO79_12905 PF00072 Response regulator receiver domain DOO79_12905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_12905 PF01627 Hpt domain DOO79_12915 PF06745 KaiC DOO79_12920 PF13426 PAS domain DOO79_12920 PF00072 Response regulator receiver domain DOO79_12920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_12930 PF03918 Cytochrome C biogenesis protein DOO79_12935 PF08534 Redoxin DOO79_12940 PF01578 Cytochrome C assembly protein DOO79_12940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DOO79_12945 PF03100 CcmE DOO79_12955 PF01578 Cytochrome C assembly protein DOO79_12960 PF00082 Subtilase family DOO79_12970 PF04542 Sigma-70 region 2 DOO79_12970 PF08281 Sigma-70, region 4 DOO79_12985 PF00034 Cytochrome c DOO79_13000 PF05523 WxcM-like, C-terminal DOO79_13020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOO79_13025 PF01943 Polysaccharide biosynthesis protein DOO79_13030 PF00535 Glycosyl transferase family 2 DOO79_13045 PF08241 Methyltransferase domain DOO79_13085 PF00005 ABC transporter DOO79_13090 PF00005 ABC transporter DOO79_13090 PF00664 ABC transporter transmembrane region DOO79_13095 PF07690 Major Facilitator Superfamily DOO79_13100 PF00296 Luciferase-like monooxygenase DOO79_13115 PF03471 Transporter associated domain DOO79_13115 PF01595 Cyclin M transmembrane N-terminal domain DOO79_13115 PF00571 CBS domain DOO79_13130 PF01384 Phosphate transporter family DOO79_13150 PF01751 Toprim domain DOO79_13150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_13150 PF00986 DNA gyrase B subunit, carboxyl terminus DOO79_13150 PF00204 DNA gyrase B DOO79_13160 PF00117 Glutamine amidotransferase class-I DOO79_13160 PF06418 CTP synthase N-terminus DOO79_13165 PF00793 DAHP synthetase I family DOO79_13175 PF00113 Enolase, C-terminal TIM barrel domain DOO79_13175 PF03952 Enolase, N-terminal domain DOO79_13180 PF04977 Septum formation initiator DOO79_13185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DOO79_13190 PF02542 YgbB family DOO79_13195 PF01142 tRNA pseudouridine synthase D (TruD) DOO79_13200 PF01713 Smr domain DOO79_13205 PF01975 Survival protein SurE DOO79_13215 PF09335 SNARE associated Golgi protein DOO79_13220 PF01476 LysM domain DOO79_13220 PF01551 Peptidase family M23 DOO79_13225 PF04430 Protein of unknown function (DUF498/DUF598) DOO79_13230 PF01985 CRS1 / YhbY (CRM) domain DOO79_13235 PF01728 FtsJ-like methyltransferase DOO79_13240 PF06480 FtsH Extracellular DOO79_13240 PF17862 AAA+ lid domain DOO79_13240 PF00004 ATPase family associated with various cellular activities (AAA) DOO79_13240 PF01434 Peptidase family M41 DOO79_13245 PF00809 Pterin binding enzyme DOO79_13255 PF17209 Hfq protein DOO79_13260 PF13167 GTP-binding GTPase N-terminal DOO79_13260 PF16360 GTP-binding GTPase Middle Region DOO79_13260 PF01926 50S ribosome-binding GTPase DOO79_13265 PF02464 Competence-damaged protein DOO79_13270 PF03109 ABC1 family DOO79_13275 PF01726 LexA DNA binding domain DOO79_13275 PF00717 Peptidase S24-like DOO79_13280 PF00154 recA bacterial DNA recombination protein DOO79_13290 PF02631 RecX family DOO79_13295 PF01411 tRNA synthetases class II (A) DOO79_13295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOO79_13295 PF02272 DHHA1 domain DOO79_13300 PF02599 Global regulator protein family DOO79_13315 PF13426 PAS domain DOO79_13315 PF08447 PAS fold DOO79_13315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_13320 PF02678 Pirin DOO79_13320 PF17954 Quercetinase C-terminal cupin domain DOO79_13325 PF03466 LysR substrate binding domain DOO79_13325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_13350 PF08543 Phosphomethylpyrimidine kinase DOO79_13365 PF02562 PhoH-like protein DOO79_13365 PF13638 PIN domain DOO79_13370 PF00578 AhpC/TSA family DOO79_13385 PF00701 Dihydrodipicolinate synthetase family DOO79_13395 PF00037 4Fe-4S binding domain DOO79_13395 PF11953 Domain of unknown function (DUF3470) DOO79_13400 PF05035 2-keto-3-deoxy-galactonokinase DOO79_13405 PF08450 SMP-30/Gluconolactonase/LRE-like region DOO79_13410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOO79_13410 PF13378 Enolase C-terminal domain-like DOO79_13415 PF01081 KDPG and KHG aldolase DOO79_13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_13425 PF03466 LysR substrate binding domain DOO79_13440 PF00942 Cellulose binding domain DOO79_13440 PF03442 Carbohydrate binding domain X2 DOO79_13455 PF01055 Glycosyl hydrolases family 31 DOO79_13455 PF17137 Domain of unknown function (DUF5110) DOO79_13455 PF16338 Domain of unknown function (DUF4968) DOO79_13465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOO79_13465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOO79_13475 PF00083 Sugar (and other) transporter DOO79_13495 PF01520 N-acetylmuramoyl-L-alanine amidase DOO79_13500 PF02649 Type I GTP cyclohydrolase folE2 DOO79_13510 PF12627 Probable RNA and SrmB- binding site of polymerase A DOO79_13510 PF12626 Polymerase A arginine-rich C-terminus DOO79_13510 PF01743 Poly A polymerase head domain DOO79_13515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DOO79_13520 PF02548 Ketopantoate hydroxymethyltransferase DOO79_13525 PF02569 Pantoate-beta-alanine ligase DOO79_13530 PF02261 Aspartate decarboxylase DOO79_13535 PF00342 Phosphoglucose isomerase DOO79_13560 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOO79_13560 PF00933 Glycosyl hydrolase family 3 N terminal domain DOO79_13560 PF14310 Fibronectin type III-like domain DOO79_13575 PF00360 Phytochrome region DOO79_13575 PF00990 Diguanylate cyclase, GGDEF domain DOO79_13575 PF00563 EAL domain DOO79_13575 PF01590 GAF domain DOO79_13585 PF02013 Cellulose or protein binding domain DOO79_13585 PF00150 Cellulase (glycosyl hydrolase family 5) DOO79_13590 PF00072 Response regulator receiver domain DOO79_13605 PF04551 GcpE protein DOO79_13610 PF01569 PAP2 superfamily DOO79_13625 PF07690 Major Facilitator Superfamily DOO79_13640 PF01565 FAD binding domain DOO79_13640 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DOO79_13645 PF01180 Dihydroorotate dehydrogenase DOO79_13665 PF00171 Aldehyde dehydrogenase family DOO79_13690 PF00183 Hsp90 protein DOO79_13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_13700 PF01467 Cytidylyltransferase-like DOO79_13715 PF00037 4Fe-4S binding domain DOO79_13725 PF02927 Cellulase N-terminal ig-like domain DOO79_13725 PF00759 Glycosyl hydrolase family 9 DOO79_13770 PF02547 Queuosine biosynthesis protein DOO79_13775 PF01702 Queuine tRNA-ribosyltransferase DOO79_13780 PF02699 Preprotein translocase subunit DOO79_13785 PF13721 SecD export protein N-terminal TM region DOO79_13785 PF07549 SecD/SecF GG Motif DOO79_13785 PF02355 Protein export membrane protein DOO79_13790 PF02355 Protein export membrane protein DOO79_13790 PF07549 SecD/SecF GG Motif DOO79_13830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOO79_13835 PF00294 pfkB family carbohydrate kinase DOO79_13840 PF00391 PEP-utilising enzyme, mobile domain DOO79_13840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOO79_13840 PF00381 PTS HPr component phosphorylation site DOO79_13840 PF02896 PEP-utilising enzyme, TIM barrel domain DOO79_13840 PF05524 PEP-utilising enzyme, N-terminal DOO79_13845 PF00356 Bacterial regulatory proteins, lacI family DOO79_13855 PF00873 AcrB/AcrD/AcrF family DOO79_13860 PF00529 HlyD membrane-fusion protein of T1SS DOO79_13860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_13870 PF05088 Bacterial NAD-glutamate dehydrogenase DOO79_13905 PF09335 SNARE associated Golgi protein DOO79_13910 PF01494 FAD binding domain DOO79_13920 PF00881 Nitroreductase family DOO79_13925 PF00106 short chain dehydrogenase DOO79_13960 PF12697 Alpha/beta hydrolase family DOO79_13960 PF08241 Methyltransferase domain DOO79_14040 PF01526 Tn3 transposase DDE domain DOO79_14040 PF13700 Domain of unknown function (DUF4158) DOO79_14055 PF01106 NifU-like domain DOO79_14060 PF01329 Pterin 4 alpha carbinolamine dehydratase DOO79_14070 PF02535 ZIP Zinc transporter DOO79_14075 PF11737 Protein of unknown function (DUF3300) DOO79_14080 PF00849 RNA pseudouridylate synthase DOO79_14080 PF01479 S4 domain DOO79_14085 PF12111 Polyribonucleotide phosphorylase C terminal DOO79_14085 PF10150 Ribonuclease E/G family DOO79_14085 PF00575 S1 RNA binding domain DOO79_14090 PF00196 Bacterial regulatory proteins, luxR family DOO79_14090 PF00072 Response regulator receiver domain DOO79_14105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOO79_14115 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOO79_14115 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOO79_14115 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOO79_14125 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DOO79_14125 PF01648 4'-phosphopantetheinyl transferase superfamily DOO79_14140 PF13193 AMP-binding enzyme C-terminal domain DOO79_14140 PF00668 Condensation domain DOO79_14140 PF00501 AMP-binding enzyme DOO79_14140 PF00975 Thioesterase domain DOO79_14140 PF00550 Phosphopantetheine attachment site DOO79_14220 PF01066 CDP-alcohol phosphatidyltransferase DOO79_14225 PF01541 GIY-YIG catalytic domain DOO79_14225 PF08459 UvrC Helix-hairpin-helix N-terminal DOO79_14225 PF02151 UvrB/uvrC motif DOO79_14235 PF01451 Low molecular weight phosphotyrosine protein phosphatase DOO79_14240 PF02348 Cytidylyltransferase DOO79_14245 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DOO79_14250 PF00664 ABC transporter transmembrane region DOO79_14250 PF00005 ABC transporter DOO79_14260 PF01618 MotA/TolQ/ExbB proton channel family DOO79_14265 PF03772 Competence protein DOO79_14265 PF00753 Metallo-beta-lactamase superfamily DOO79_14275 PF00005 ABC transporter DOO79_14280 PF02687 FtsX-like permease family DOO79_14280 PF12704 MacB-like periplasmic core domain DOO79_14290 PF03937 Flavinator of succinate dehydrogenase DOO79_14295 PF13085 2Fe-2S iron-sulfur cluster binding domain DOO79_14295 PF13237 4Fe-4S dicluster domain DOO79_14305 PF02910 Fumarate reductase flavoprotein C-term DOO79_14305 PF00890 FAD binding domain DOO79_14310 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOO79_14315 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOO79_14330 PF17912 MalK OB fold domain DOO79_14330 PF00005 ABC transporter DOO79_14335 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DOO79_14335 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DOO79_14340 PF02685 Glucokinase DOO79_14345 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DOO79_14350 PF00920 Dehydratase family DOO79_14355 PF01081 KDPG and KHG aldolase DOO79_14365 PF00873 AcrB/AcrD/AcrF family DOO79_14370 PF00873 AcrB/AcrD/AcrF family DOO79_14375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_14385 PF00034 Cytochrome c DOO79_14430 PF00072 Response regulator receiver domain DOO79_14430 PF09308 LuxQ, periplasmic DOO79_14430 PF00512 His Kinase A (phospho-acceptor) domain DOO79_14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_14435 PF17674 HHH domain DOO79_14435 PF09371 Tex-like protein N-terminal domain DOO79_14435 PF16921 Tex protein YqgF-like domain DOO79_14435 PF00575 S1 RNA binding domain DOO79_14445 PF00355 Rieske [2Fe-2S] domain DOO79_14445 PF01266 FAD dependent oxidoreductase DOO79_14460 PF00561 alpha/beta hydrolase fold DOO79_14470 PF01066 CDP-alcohol phosphatidyltransferase DOO79_14490 PF03618 Kinase/pyrophosphorylase DOO79_14495 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DOO79_14495 PF02896 PEP-utilising enzyme, TIM barrel domain DOO79_14495 PF00391 PEP-utilising enzyme, mobile domain DOO79_14500 PF00924 Mechanosensitive ion channel DOO79_14500 PF05552 Conserved TM helix DOO79_14505 PF03377 TAL effector repeat DOO79_14520 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DOO79_14585 PF02810 SEC-C motif DOO79_14585 PF03695 Uncharacterised protein family (UPF0149) DOO79_14605 PF02796 Helix-turn-helix domain of resolvase DOO79_14605 PF00239 Resolvase, N terminal domain DOO79_14635 PF00929 Exonuclease DOO79_14640 PF14437 MafB19-like deaminase DOO79_14645 PF01325 Iron dependent repressor, N-terminal DNA binding domain DOO79_14645 PF02742 Iron dependent repressor, metal binding and dimerisation domain DOO79_14650 PF01566 Natural resistance-associated macrophage protein DOO79_14655 PF00561 alpha/beta hydrolase fold DOO79_14670 PF05977 Transmembrane secretion effector DOO79_14695 PF00857 Isochorismatase family DOO79_14710 PF00072 Response regulator receiver domain DOO79_14710 PF00196 Bacterial regulatory proteins, luxR family DOO79_14730 PF03466 LysR substrate binding domain DOO79_14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_14735 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus DOO79_14735 PF00361 Proton-conducting membrane transporter DOO79_14735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOO79_14740 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) DOO79_14745 PF00117 Glutamine amidotransferase class-I DOO79_14745 PF00958 GMP synthase C terminal domain DOO79_14745 PF02540 NAD synthase DOO79_14750 PF00571 CBS domain DOO79_14750 PF00478 IMP dehydrogenase / GMP reductase domain DOO79_14755 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DOO79_14755 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DOO79_14765 PF02254 TrkA-N domain DOO79_14765 PF00999 Sodium/hydrogen exchanger family DOO79_14775 PF00483 Nucleotidyl transferase DOO79_14780 PF02719 Polysaccharide biosynthesis protein DOO79_14785 PF00953 Glycosyl transferase family 4 DOO79_14790 PF18073 Rubredoxin metal binding domain DOO79_14800 PF00216 Bacterial DNA-binding protein DOO79_14805 PF00575 S1 RNA binding domain DOO79_14810 PF02224 Cytidylate kinase DOO79_14815 PF00444 Ribosomal protein L36 DOO79_14830 PF04371 Porphyromonas-type peptidyl-arginine deiminase DOO79_14835 PF00795 Carbon-nitrogen hydrolase DOO79_14860 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_14865 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_14885 PF00356 Bacterial regulatory proteins, lacI family DOO79_14895 PF03795 YCII-related domain DOO79_14900 PF02616 Segregation and condensation protein ScpA DOO79_14905 PF04079 Segregation and condensation complex subunit ScpB DOO79_14910 PF01479 S4 domain DOO79_14910 PF00849 RNA pseudouridylate synthase DOO79_14925 PF00795 Carbon-nitrogen hydrolase DOO79_14930 PF00155 Aminotransferase class I and II DOO79_14935 PF00005 ABC transporter DOO79_14940 PF03379 CcmB protein DOO79_14945 PF01578 Cytochrome C assembly protein DOO79_14955 PF03100 CcmE DOO79_14960 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DOO79_14960 PF01578 Cytochrome C assembly protein DOO79_14965 PF08534 Redoxin DOO79_14970 PF03918 Cytochrome C biogenesis protein DOO79_14980 PF00561 alpha/beta hydrolase fold DOO79_14985 PF00313 'Cold-shock' DNA-binding domain DOO79_14990 PF00005 ABC transporter DOO79_14990 PF00664 ABC transporter transmembrane region DOO79_14995 PF00664 ABC transporter transmembrane region DOO79_14995 PF00005 ABC transporter DOO79_15000 PF01654 Cytochrome bd terminal oxidase subunit I DOO79_15005 PF02322 Cytochrome bd terminal oxidase subunit II DOO79_15015 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DOO79_15030 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DOO79_15030 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DOO79_15040 PF00171 Aldehyde dehydrogenase family DOO79_15045 PF00696 Amino acid kinase family DOO79_15045 PF01472 PUA domain DOO79_15055 PF00206 Lyase DOO79_15060 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOO79_15070 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase DOO79_15070 PF00696 Amino acid kinase family DOO79_15075 PF07687 Peptidase dimerisation domain DOO79_15075 PF01546 Peptidase family M20/M25/M40 DOO79_15085 PF00764 Arginosuccinate synthase DOO79_15090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOO79_15090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOO79_15100 PF01406 tRNA synthetases class I (C) catalytic domain DOO79_15100 PF09190 DALR domain DOO79_15105 PF02657 Fe-S metabolism associated domain DOO79_15115 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOO79_15120 PF01809 Putative membrane protein insertion efficiency factor DOO79_15125 PF01979 Amidohydrolase family DOO79_15150 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DOO79_15155 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DOO79_15165 PF00753 Metallo-beta-lactamase superfamily DOO79_15210 PF00295 Glycosyl hydrolases family 28 DOO79_15220 PF13419 Haloacid dehalogenase-like hydrolase DOO79_15230 PF01979 Amidohydrolase family DOO79_15240 PF01132 Elongation factor P (EF-P) OB domain DOO79_15240 PF09285 Elongation factor P, C-terminal DOO79_15240 PF08207 Elongation factor P (EF-P) KOW-like domain DOO79_15245 PF04055 Radical SAM superfamily DOO79_15250 PF00563 EAL domain DOO79_15250 PF00990 Diguanylate cyclase, GGDEF domain DOO79_15250 PF03707 Bacterial signalling protein N terminal repeat DOO79_15250 PF13188 PAS domain DOO79_15260 PF00588 SpoU rRNA Methylase family DOO79_15265 PF00459 Inositol monophosphatase family DOO79_15270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOO79_15270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOO79_15275 PF00545 ribonuclease DOO79_15295 PF03880 DbpA RNA binding domain DOO79_15295 PF00271 Helicase conserved C-terminal domain DOO79_15295 PF00270 DEAD/DEAH box helicase DOO79_15300 PF00156 Phosphoribosyl transferase domain DOO79_15305 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DOO79_15315 PF14497 Glutathione S-transferase, C-terminal domain DOO79_15315 PF02798 Glutathione S-transferase, N-terminal domain DOO79_15320 PF00313 'Cold-shock' DNA-binding domain DOO79_15325 PF07152 YaeQ protein DOO79_15375 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOO79_15380 PF00106 short chain dehydrogenase DOO79_15385 PF07879 PHB/PHA accumulation regulator DNA-binding domain DOO79_15385 PF05233 PHB accumulation regulatory domain DOO79_15405 PF08676 MutL C terminal dimerisation domain DOO79_15405 PF01119 DNA mismatch repair protein, C-terminal domain DOO79_15410 PF01520 N-acetylmuramoyl-L-alanine amidase DOO79_15410 PF11741 AMIN domain DOO79_15415 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DOO79_15420 PF03853 YjeF-related protein N-terminus DOO79_15420 PF01256 Carbohydrate kinase DOO79_15425 PF08331 Domain of unknown function (DUF1730) DOO79_15430 PF13742 OB-fold nucleic acid binding domain DOO79_15430 PF02601 Exonuclease VII, large subunit DOO79_15445 PF03781 Sulfatase-modifying factor enzyme 1 DOO79_15455 PF00570 HRDC domain DOO79_15455 PF01612 3'-5' exonuclease DOO79_15485 PF01584 CheW-like domain DOO79_15490 PF00672 HAMP domain DOO79_15490 PF02743 Cache domain DOO79_15490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_15495 PF02245 Methylpurine-DNA glycosylase (MPG) DOO79_15500 PF08494 DEAD/H associated DOO79_15500 PF00271 Helicase conserved C-terminal domain DOO79_15500 PF00270 DEAD/DEAH box helicase DOO79_15520 PF04386 Stringent starvation protein B DOO79_15525 PF02798 Glutathione S-transferase, N-terminal domain DOO79_15525 PF00043 Glutathione S-transferase, C-terminal domain DOO79_15530 PF02167 Cytochrome C1 family DOO79_15535 PF00033 Cytochrome b/b6/petB DOO79_15535 PF00032 Cytochrome b(C-terminal)/b6/petD DOO79_15550 PF01464 Transglycosylase SLT domain DOO79_15565 PF04055 Radical SAM superfamily DOO79_15565 PF01938 TRAM domain DOO79_15565 PF00919 Uncharacterized protein family UPF0004 DOO79_15570 PF02562 PhoH-like protein DOO79_15580 PF02130 Uncharacterized protein family UPF0054 DOO79_15590 PF00571 CBS domain DOO79_15590 PF03471 Transporter associated domain DOO79_15605 PF00171 Aldehyde dehydrogenase family DOO79_15610 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_15615 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_15620 PF08402 TOBE domain DOO79_15620 PF00005 ABC transporter DOO79_15625 PF02321 Outer membrane efflux protein DOO79_15630 PF07690 Major Facilitator Superfamily DOO79_15635 PF13533 Biotin-lipoyl like DOO79_15640 PF13416 Bacterial extracellular solute-binding protein DOO79_15645 PF00202 Aminotransferase class-III DOO79_15650 PF00120 Glutamine synthetase, catalytic domain DOO79_15655 PF07722 Peptidase C26 DOO79_15660 PF00120 Glutamine synthetase, catalytic domain DOO79_15665 PF01266 FAD dependent oxidoreductase DOO79_15670 PF00990 Diguanylate cyclase, GGDEF domain DOO79_15670 PF00072 Response regulator receiver domain DOO79_15675 PF01814 Hemerythrin HHE cation binding domain DOO79_15680 PF00083 Sugar (and other) transporter DOO79_15680 PF07690 Major Facilitator Superfamily DOO79_15690 PF00384 Molybdopterin oxidoreductase DOO79_15695 PF02634 FdhD/NarQ family DOO79_15700 PF07690 Major Facilitator Superfamily DOO79_15715 PF00202 Aminotransferase class-III DOO79_15725 PF04286 Protein of unknown function (DUF445) DOO79_15730 PF00672 HAMP domain DOO79_15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_15730 PF00512 His Kinase A (phospho-acceptor) domain DOO79_15730 PF01627 Hpt domain DOO79_15730 PF00072 Response regulator receiver domain DOO79_15730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOO79_15735 PF00072 Response regulator receiver domain DOO79_15740 PF07690 Major Facilitator Superfamily DOO79_15760 PF00082 Subtilase family DOO79_15760 PF03797 Autotransporter beta-domain DOO79_15770 PF00529 HlyD membrane-fusion protein of T1SS DOO79_15770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOO79_15785 PF00072 Response regulator receiver domain DOO79_15785 PF13426 PAS domain DOO79_15785 PF08448 PAS fold DOO79_15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_15785 PF00512 His Kinase A (phospho-acceptor) domain DOO79_15790 PF00072 Response regulator receiver domain DOO79_15790 PF00196 Bacterial regulatory proteins, luxR family DOO79_15820 PF05974 Domain of unknown function (DUF892) DOO79_15860 PF10414 Sirohaem synthase dimerisation region DOO79_15860 PF14824 Sirohaem biosynthesis protein central DOO79_15860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOO79_15870 PF12804 MobA-like NTP transferase domain DOO79_15885 PF03372 Endonuclease/Exonuclease/phosphatase family DOO79_15895 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_15895 PF00107 Zinc-binding dehydrogenase DOO79_15895 PF13823 Alcohol dehydrogenase GroES-associated DOO79_15925 PF00899 ThiF family DOO79_15935 PF03454 MoeA C-terminal region (domain IV) DOO79_15935 PF03453 MoeA N-terminal region (domain I and II) DOO79_15935 PF00994 Probable molybdopterin binding domain DOO79_15940 PF01926 50S ribosome-binding GTPase DOO79_15940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DOO79_15945 PF13360 PQQ-like domain DOO79_15945 PF01011 PQQ enzyme repeat DOO79_15955 PF13464 Domain of unknown function (DUF4115) DOO79_15965 PF04055 Radical SAM superfamily DOO79_15970 PF00334 Nucleoside diphosphate kinase DOO79_15980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOO79_15980 PF00378 Enoyl-CoA hydratase/isomerase DOO79_15980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOO79_15985 PF02803 Thiolase, C-terminal domain DOO79_15985 PF00108 Thiolase, N-terminal domain DOO79_15995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOO79_16000 PF00004 ATPase family associated with various cellular activities (AAA) DOO79_16000 PF16193 AAA C-terminal domain DOO79_16000 PF12002 MgsA AAA+ ATPase C terminal DOO79_16010 PF03548 Outer membrane lipoprotein carrier protein LolA DOO79_16020 PF09397 Ftsk gamma domain DOO79_16020 PF17854 FtsK alpha domain DOO79_16020 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DOO79_16020 PF01580 FtsK/SpoIIIE family DOO79_16025 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_16040 PF01176 Translation initiation factor 1A / IF-1 DOO79_16045 PF00004 ATPase family associated with various cellular activities (AAA) DOO79_16045 PF10431 C-terminal, D2-small domain, of ClpB protein DOO79_16045 PF02861 Clp amino terminal domain, pathogenicity island component DOO79_16045 PF07724 AAA domain (Cdc48 subfamily) DOO79_16045 PF17871 AAA lid domain DOO79_16050 PF02617 ATP-dependent Clp protease adaptor protein ClpS DOO79_16055 PF00293 NUDIX domain DOO79_16065 PF04356 Protein of unknown function (DUF489) DOO79_16070 PF12729 Four helix bundle sensory module for signal transduction DOO79_16070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16070 PF00672 HAMP domain DOO79_16085 PF07730 Histidine kinase DOO79_16085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_16090 PF00563 EAL domain DOO79_16090 PF00990 Diguanylate cyclase, GGDEF domain DOO79_16090 PF03707 Bacterial signalling protein N terminal repeat DOO79_16095 PF13188 PAS domain DOO79_16095 PF00989 PAS fold DOO79_16095 PF00512 His Kinase A (phospho-acceptor) domain DOO79_16095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_16095 PF13426 PAS domain DOO79_16115 PF01584 CheW-like domain DOO79_16115 PF00072 Response regulator receiver domain DOO79_16125 PF00460 Flagella basal body rod protein DOO79_16125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_16130 PF03963 Flagellar hook capping protein - N-terminal region DOO79_16135 PF07559 Flagellar basal body protein FlaE DOO79_16135 PF00460 Flagella basal body rod protein DOO79_16135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_16140 PF00460 Flagella basal body rod protein DOO79_16140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_16150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_16150 PF00460 Flagella basal body rod protein DOO79_16155 PF02107 Flagellar L-ring protein DOO79_16160 PF02119 Flagellar P-ring protein DOO79_16165 PF10135 Rod binding protein DOO79_16165 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DOO79_16170 PF07196 Flagellin hook IN motif DOO79_16170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOO79_16175 PF00669 Bacterial flagellin N-terminal helical region DOO79_16175 PF00700 Bacterial flagellin C-terminal helical region DOO79_16180 PF00669 Bacterial flagellin N-terminal helical region DOO79_16180 PF00700 Bacterial flagellin C-terminal helical region DOO79_16185 PF07196 Flagellin hook IN motif DOO79_16185 PF07195 Flagellar hook-associated protein 2 C-terminus DOO79_16185 PF02465 Flagellar hook-associated protein 2 N-terminus DOO79_16190 PF02561 Flagellar protein FliS DOO79_16205 PF00196 Bacterial regulatory proteins, luxR family DOO79_16205 PF00072 Response regulator receiver domain DOO79_16210 PF00309 Sigma-54 factor, Activator interacting domain (AID) DOO79_16210 PF04963 Sigma-54 factor, core binding domain DOO79_16210 PF04552 Sigma-54, DNA binding domain DOO79_16215 PF01339 CheB methylesterase DOO79_16215 PF00072 Response regulator receiver domain DOO79_16220 PF02954 Bacterial regulatory protein, Fis family DOO79_16220 PF06490 Flagellar regulatory protein FleQ DOO79_16220 PF00158 Sigma-54 interaction domain DOO79_16305 PF00534 Glycosyl transferases group 1 DOO79_16305 PF00535 Glycosyl transferase family 2 DOO79_16310 PF02049 Flagellar hook-basal body complex protein FliE DOO79_16315 PF08345 Flagellar M-ring protein C-terminal DOO79_16315 PF01514 Secretory protein of YscJ/FliF family DOO79_16320 PF14842 FliG N-terminal domain DOO79_16320 PF01706 FliG C-terminal domain DOO79_16320 PF14841 FliG middle domain DOO79_16330 PF18269 T3SS EscN ATPase C-terminal domain DOO79_16330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOO79_16350 PF02154 Flagellar motor switch protein FliM DOO79_16350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOO79_16355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOO79_16360 PF04347 Flagellar biosynthesis protein, FliO DOO79_16365 PF00813 FliP family DOO79_16375 PF01313 Bacterial export proteins, family 3 DOO79_16380 PF01311 Bacterial export proteins, family 1 DOO79_16385 PF00990 Diguanylate cyclase, GGDEF domain DOO79_16385 PF13188 PAS domain DOO79_16385 PF03707 Bacterial signalling protein N terminal repeat DOO79_16385 PF00563 EAL domain DOO79_16405 PF01312 FlhB HrpN YscU SpaS Family DOO79_16410 PF00771 FHIPEP family DOO79_16420 PF10609 NUBPL iron-transfer P-loop NTPase DOO79_16425 PF04542 Sigma-70 region 2 DOO79_16425 PF04545 Sigma-70, region 4 DOO79_16425 PF04539 Sigma-70 region 3 DOO79_16430 PF00072 Response regulator receiver domain DOO79_16435 PF04344 Chemotaxis phosphatase, CheZ DOO79_16440 PF01627 Hpt domain DOO79_16440 PF02895 Signal transducing histidine kinase, homodimeric domain DOO79_16440 PF01584 CheW-like domain DOO79_16440 PF00072 Response regulator receiver domain DOO79_16440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_16455 PF04055 Radical SAM superfamily DOO79_16455 PF13186 Iron-sulfur cluster-binding domain DOO79_16490 PF01618 MotA/TolQ/ExbB proton channel family DOO79_16495 PF13677 Membrane MotB of proton-channel complex MotA/MotB DOO79_16495 PF00691 OmpA family DOO79_16500 PF13614 AAA domain DOO79_16515 PF00072 Response regulator receiver domain DOO79_16520 PF02895 Signal transducing histidine kinase, homodimeric domain DOO79_16520 PF09078 CheY binding DOO79_16520 PF01584 CheW-like domain DOO79_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_16520 PF01627 Hpt domain DOO79_16525 PF00672 HAMP domain DOO79_16525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16525 PF02203 Tar ligand binding domain homologue DOO79_16535 PF08269 Cache domain DOO79_16535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16535 PF08269 Cache domain DOO79_16535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16540 PF00672 HAMP domain DOO79_16540 PF02203 Tar ligand binding domain homologue DOO79_16540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16555 PF02203 Tar ligand binding domain homologue DOO79_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16555 PF00672 HAMP domain DOO79_16560 PF00672 HAMP domain DOO79_16560 PF02203 Tar ligand binding domain homologue DOO79_16560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16570 PF02203 Tar ligand binding domain homologue DOO79_16570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16570 PF00672 HAMP domain DOO79_16575 PF02203 Tar ligand binding domain homologue DOO79_16575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16575 PF00672 HAMP domain DOO79_16585 PF00672 HAMP domain DOO79_16585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16585 PF02203 Tar ligand binding domain homologue DOO79_16590 PF00672 HAMP domain DOO79_16590 PF02203 Tar ligand binding domain homologue DOO79_16590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16595 PF00672 HAMP domain DOO79_16595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16595 PF02203 Tar ligand binding domain homologue DOO79_16600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16600 PF00672 HAMP domain DOO79_16600 PF02203 Tar ligand binding domain homologue DOO79_16605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16605 PF00672 HAMP domain DOO79_16605 PF02203 Tar ligand binding domain homologue DOO79_16610 PF07317 Flagellar regulator YcgR DOO79_16610 PF07238 PilZ domain DOO79_16615 PF01584 CheW-like domain DOO79_16625 PF00672 HAMP domain DOO79_16625 PF02203 Tar ligand binding domain homologue DOO79_16625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_16630 PF03705 CheR methyltransferase, all-alpha domain DOO79_16630 PF01739 CheR methyltransferase, SAM binding domain DOO79_16635 PF03975 CheD chemotactic sensory transduction DOO79_16640 PF00072 Response regulator receiver domain DOO79_16640 PF01339 CheB methylesterase DOO79_16645 PF00990 Diguanylate cyclase, GGDEF domain DOO79_16645 PF00563 EAL domain DOO79_16645 PF03707 Bacterial signalling protein N terminal repeat DOO79_16650 PF00561 alpha/beta hydrolase fold DOO79_16655 PF00330 Aconitase family (aconitate hydratase) DOO79_16655 PF06434 Aconitate hydratase 2 N-terminus DOO79_16655 PF11791 Aconitate B N-terminal domain DOO79_16670 PF00330 Aconitase family (aconitate hydratase) DOO79_16670 PF00694 Aconitase C-terminal domain DOO79_16680 PF13193 AMP-binding enzyme C-terminal domain DOO79_16680 PF00501 AMP-binding enzyme DOO79_16715 PF00378 Enoyl-CoA hydratase/isomerase DOO79_16720 PF00512 His Kinase A (phospho-acceptor) domain DOO79_16720 PF01627 Hpt domain DOO79_16720 PF00072 Response regulator receiver domain DOO79_16720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_16725 PF00072 Response regulator receiver domain DOO79_16730 PF00152 tRNA synthetases class II (D, K and N) DOO79_16730 PF01336 OB-fold nucleic acid binding domain DOO79_16740 PF04397 LytTr DNA-binding domain DOO79_16740 PF00072 Response regulator receiver domain DOO79_16790 PF01368 DHH family DOO79_16790 PF17768 RecJ OB domain DOO79_16790 PF02272 DHHA1 domain DOO79_16800 PF01272 Transcription elongation factor, GreA/GreB, C-term DOO79_16800 PF03449 Transcription elongation factor, N-terminal DOO79_16805 PF02142 MGS-like domain DOO79_16805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOO79_16805 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOO79_16815 PF00117 Glutamine amidotransferase class-I DOO79_16815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DOO79_16820 PF05173 Dihydrodipicolinate reductase, C-terminus DOO79_16820 PF01113 Dihydrodipicolinate reductase, N-terminus DOO79_16825 PF03473 MOSC domain DOO79_16825 PF03475 3-alpha domain DOO79_16845 PF02421 Ferrous iron transport protein B DOO79_16845 PF07664 Ferrous iron transport protein B C terminus DOO79_16845 PF07670 Nucleoside recognition DOO79_16855 PF00378 Enoyl-CoA hydratase/isomerase DOO79_16865 PF00682 HMGL-like DOO79_16870 PF00106 short chain dehydrogenase DOO79_16875 PF08207 Elongation factor P (EF-P) KOW-like domain DOO79_16875 PF01132 Elongation factor P (EF-P) OB domain DOO79_16875 PF09285 Elongation factor P, C-terminal DOO79_16895 PF02913 FAD linked oxidases, C-terminal domain DOO79_16895 PF01565 FAD binding domain DOO79_16900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOO79_16900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOO79_16900 PF01842 ACT domain DOO79_16910 PF13520 Amino acid permease DOO79_16920 PF00392 Bacterial regulatory proteins, gntR family DOO79_16920 PF07702 UTRA domain DOO79_16985 PF13520 Amino acid permease DOO79_16990 PF00596 Class II Aldolase and Adducin N-terminal domain DOO79_16995 PF03079 ARD/ARD' family DOO79_17015 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DOO79_17015 PF01502 Phosphoribosyl-AMP cyclohydrolase DOO79_17020 PF00977 Histidine biosynthesis protein DOO79_17025 PF00977 Histidine biosynthesis protein DOO79_17030 PF00117 Glutamine amidotransferase class-I DOO79_17035 PF00475 Imidazoleglycerol-phosphate dehydratase DOO79_17040 PF00155 Aminotransferase class I and II DOO79_17045 PF00815 Histidinol dehydrogenase DOO79_17050 PF01634 ATP phosphoribosyltransferase DOO79_17050 PF08029 HisG, C-terminal domain DOO79_17060 PF13393 Histidyl-tRNA synthetase DOO79_17060 PF03129 Anticodon binding domain DOO79_17065 PF13545 Crp-like helix-turn-helix domain DOO79_17065 PF00027 Cyclic nucleotide-binding domain DOO79_17075 PF14821 Threonine synthase N terminus DOO79_17075 PF00291 Pyridoxal-phosphate dependent enzyme DOO79_17085 PF08544 GHMP kinases C terminal DOO79_17085 PF00288 GHMP kinases N terminal domain DOO79_17090 PF13840 ACT domain DOO79_17090 PF00742 Homoserine dehydrogenase DOO79_17090 PF03447 Homoserine dehydrogenase, NAD binding domain DOO79_17090 PF00696 Amino acid kinase family DOO79_17090 PF01842 ACT domain DOO79_17100 PF05594 Haemagluttinin repeat DOO79_17100 PF13018 Extended Signal Peptide of Type V secretion system DOO79_17100 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain DOO79_17100 PF13332 Hemagglutinin repeat DOO79_17100 PF05860 haemagglutination activity domain DOO79_17150 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DOO79_17150 PF17287 POTRA domain DOO79_17150 PF08479 POTRA domain, ShlB-type DOO79_17160 PF14883 Hypothetical glycosyl hydrolase family 13 DOO79_17160 PF01522 Polysaccharide deacetylase DOO79_17190 PF02794 RTX toxin acyltransferase family DOO79_17255 PF07532 Bacterial Ig-like domain (group 4) DOO79_17265 PF07715 TonB-dependent Receptor Plug Domain DOO79_17265 PF00593 TonB dependent receptor DOO79_17305 PF13520 Amino acid permease DOO79_17325 PF01321 Creatinase/Prolidase N-terminal domain DOO79_17325 PF00557 Metallopeptidase family M24 DOO79_17330 PF00171 Aldehyde dehydrogenase family DOO79_17335 PF00701 Dihydrodipicolinate synthetase family DOO79_17340 PF04324 BFD-like [2Fe-2S] binding domain DOO79_17340 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_17350 PF01266 FAD dependent oxidoreductase DOO79_17355 PF05544 Proline racemase DOO79_17365 PF02881 SRP54-type protein, helical bundle domain DOO79_17365 PF00448 SRP54-type protein, GTPase domain DOO79_17375 PF00633 Helix-hairpin-helix motif DOO79_17375 PF10576 Iron-sulfur binding domain of endonuclease III DOO79_17375 PF00730 HhH-GPD superfamily base excision DNA repair protein DOO79_17375 PF14815 NUDIX domain DOO79_17380 PF04362 Bacterial Fe(2+) trafficking DOO79_17385 PF13426 PAS domain DOO79_17385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_17385 PF00072 Response regulator receiver domain DOO79_17430 PF08212 Lipocalin-like domain DOO79_17445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_17445 PF12806 Acetyl-CoA dehydrogenase C-terminal like DOO79_17445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_17445 PF02770 Acyl-CoA dehydrogenase, middle domain DOO79_17455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DOO79_17455 PF02779 Transketolase, pyrimidine binding domain DOO79_17455 PF02780 Transketolase, C-terminal domain DOO79_17475 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DOO79_17480 PF16123 Hydroxyacylglutathione hydrolase C-terminus DOO79_17480 PF00753 Metallo-beta-lactamase superfamily DOO79_17485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOO79_17485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOO79_17500 PF03808 Glycosyl transferase WecB/TagA/CpsF family DOO79_17515 PF14667 Polysaccharide biosynthesis C-terminal domain DOO79_17525 PF13439 Glycosyltransferase Family 4 DOO79_17525 PF00534 Glycosyl transferases group 1 DOO79_17545 PF02397 Bacterial sugar transferase DOO79_17565 PF13411 MerR HTH family regulatory protein DOO79_17570 PF00216 Bacterial DNA-binding protein DOO79_17575 PF03483 B3/4 domain DOO79_17575 PF03484 tRNA synthetase B5 domain DOO79_17575 PF01588 Putative tRNA binding domain DOO79_17575 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DOO79_17575 PF03147 Ferredoxin-fold anticodon binding domain DOO79_17580 PF01409 tRNA synthetases class II core domain (F) DOO79_17580 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DOO79_17585 PF00453 Ribosomal protein L20 DOO79_17590 PF01632 Ribosomal protein L35 DOO79_17595 PF05198 Translation initiation factor IF-3, N-terminal domain DOO79_17595 PF00707 Translation initiation factor IF-3, C-terminal domain DOO79_17600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOO79_17600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOO79_17600 PF02824 TGS domain DOO79_17600 PF03129 Anticodon binding domain DOO79_17605 PF00356 Bacterial regulatory proteins, lacI family DOO79_17630 PF01464 Transglycosylase SLT domain DOO79_17650 PF03743 Bacterial conjugation TrbI-like protein DOO79_17670 PF02534 Type IV secretory system Conjugative DNA transfer DOO79_17685 PF02151 UvrB/uvrC motif DOO79_17685 PF00271 Helicase conserved C-terminal domain DOO79_17685 PF04851 Type III restriction enzyme, res subunit DOO79_17685 PF12344 Ultra-violet resistance protein B DOO79_17685 PF17757 UvrB interaction domain DOO79_17715 PF05567 Neisseria PilC beta-propeller domain DOO79_17735 PF00114 Pilin (bacterial filament) DOO79_17735 PF07963 Prokaryotic N-terminal methylation motif DOO79_17740 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DOO79_17740 PF11892 Domain of unknown function (DUF3412) DOO79_17740 PF03641 Possible lysine decarboxylase DOO79_17745 PF00593 TonB dependent receptor DOO79_17755 PF01914 MarC family integral membrane protein DOO79_17765 PF00462 Glutaredoxin DOO79_17770 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOO79_17770 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOO79_17775 PF02222 ATP-grasp domain DOO79_17775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DOO79_17780 PF00731 AIR carboxylase DOO79_17790 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DOO79_17790 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DOO79_17800 PF00575 S1 RNA binding domain DOO79_17800 PF01138 3' exoribonuclease family, domain 1 DOO79_17800 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DOO79_17800 PF00013 KH domain DOO79_17800 PF03725 3' exoribonuclease family, domain 2 DOO79_17805 PF00312 Ribosomal protein S15 DOO79_17810 PF01509 TruB family pseudouridylate synthase (N terminal domain) DOO79_17810 PF16198 tRNA pseudouridylate synthase B C-terminal domain DOO79_17810 PF09157 Pseudouridine synthase II TruB, C-terminal DOO79_17815 PF02033 Ribosome-binding factor A DOO79_17820 PF11987 Translation-initiation factor 2 DOO79_17820 PF08364 Bacterial translation initiation factor IF-2 associated region DOO79_17820 PF04760 Translation initiation factor IF-2, N-terminal region DOO79_17820 PF00009 Elongation factor Tu GTP binding domain DOO79_17825 PF13184 NusA-like KH domain DOO79_17825 PF00575 S1 RNA binding domain DOO79_17825 PF08529 NusA N-terminal domain DOO79_17830 PF02576 RimP N-terminal domain DOO79_17830 PF17384 RimP C-terminal SH3 domain DOO79_17840 PF00361 Proton-conducting membrane transporter DOO79_17845 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DOO79_17845 PF00361 Proton-conducting membrane transporter DOO79_17850 PF00361 Proton-conducting membrane transporter DOO79_17850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOO79_17855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DOO79_17860 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DOO79_17865 PF12838 4Fe-4S dicluster domain DOO79_17870 PF00146 NADH dehydrogenase DOO79_17875 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DOO79_17875 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DOO79_17875 PF00384 Molybdopterin oxidoreductase DOO79_17880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DOO79_17880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOO79_17880 PF10531 SLBB domain DOO79_17890 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DOO79_17895 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOO79_17900 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOO79_17905 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DOO79_17920 PF00121 Triosephosphate isomerase DOO79_17925 PF00106 short chain dehydrogenase DOO79_17940 PF03707 Bacterial signalling protein N terminal repeat DOO79_17940 PF00990 Diguanylate cyclase, GGDEF domain DOO79_17940 PF00563 EAL domain DOO79_17955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOO79_17955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOO79_17955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOO79_17955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOO79_17960 PF01039 Carboxyl transferase domain DOO79_17960 PF17848 Acetyl-coA carboxylase zinc finger domain DOO79_17965 PF00290 Tryptophan synthase alpha chain DOO79_17975 PF00291 Pyridoxal-phosphate dependent enzyme DOO79_17980 PF03466 LysR substrate binding domain DOO79_17980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_17985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DOO79_17990 PF01416 tRNA pseudouridine synthase DOO79_18010 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOO79_18010 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOO79_18015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOO79_18015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOO79_18020 PF01264 Chorismate synthase DOO79_18025 PF05175 Methyltransferase small domain DOO79_18030 PF02630 SCO1/SenC DOO79_18035 PF02666 Phosphatidylserine decarboxylase DOO79_18050 PF05872 Bacterial protein of unknown function (DUF853) DOO79_18055 PF00293 NUDIX domain DOO79_18075 PF01272 Transcription elongation factor, GreA/GreB, C-term DOO79_18075 PF03449 Transcription elongation factor, N-terminal DOO79_18080 PF04055 Radical SAM superfamily DOO79_18080 PF18693 TRAM domain DOO79_18080 PF00919 Uncharacterized protein family UPF0004 DOO79_18090 PF00717 Peptidase S24-like DOO79_18095 PF11799 impB/mucB/samB family C-terminal domain DOO79_18095 PF00817 impB/mucB/samB family DOO79_18095 PF13438 Domain of unknown function (DUF4113) DOO79_18095 PF11798 IMS family HHH motif DOO79_18115 PF01555 DNA methylase DOO79_18170 PF00182 Chitinase class I DOO79_18345 PF01738 Dienelactone hydrolase family DOO79_18365 PF00692 dUTPase DOO79_18375 PF10609 NUBPL iron-transfer P-loop NTPase DOO79_18380 PF00593 TonB dependent receptor DOO79_18380 PF07715 TonB-dependent Receptor Plug Domain DOO79_18400 PF05192 MutS domain III DOO79_18400 PF01624 MutS domain I DOO79_18400 PF05188 MutS domain II DOO79_18400 PF00488 MutS domain V DOO79_18400 PF05190 MutS family domain IV DOO79_18410 PF00141 Peroxidase DOO79_18415 PF01479 S4 domain DOO79_18430 PF01554 MatE DOO79_18435 PF01245 Ribosomal protein L19 DOO79_18440 PF01746 tRNA (Guanine-1)-methyltransferase DOO79_18445 PF01782 RimM N-terminal domain DOO79_18445 PF05239 PRC-barrel domain DOO79_18450 PF00886 Ribosomal protein S16 DOO79_18455 PF01063 Amino-transferase class IV DOO79_18460 PF03060 Nitronate monooxygenase DOO79_18465 PF02881 SRP54-type protein, helical bundle domain DOO79_18465 PF02978 Signal peptide binding domain DOO79_18465 PF00448 SRP54-type protein, GTPase domain DOO79_18470 PF01578 Cytochrome C assembly protein DOO79_18475 PF01263 Aldose 1-epimerase DOO79_18480 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DOO79_18490 PF00072 Response regulator receiver domain DOO79_18510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOO79_18510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_18510 PF01627 Hpt domain DOO79_18510 PF00512 His Kinase A (phospho-acceptor) domain DOO79_18510 PF00672 HAMP domain DOO79_18510 PF00072 Response regulator receiver domain DOO79_18515 PF01739 CheR methyltransferase, SAM binding domain DOO79_18515 PF03705 CheR methyltransferase, all-alpha domain DOO79_18520 PF01339 CheB methylesterase DOO79_18525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_18525 PF00512 His Kinase A (phospho-acceptor) domain DOO79_18525 PF02702 Osmosensitive K+ channel His kinase sensor domain DOO79_18525 PF13493 Domain of unknown function (DUF4118) DOO79_18525 PF13492 GAF domain DOO79_18530 PF07237 Protein of unknown function (DUF1428) DOO79_18535 PF00085 Thioredoxin DOO79_18540 PF07715 TonB-dependent Receptor Plug Domain DOO79_18540 PF00593 TonB dependent receptor DOO79_18545 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DOO79_18545 PF04616 Glycosyl hydrolases family 43 DOO79_18555 PF00672 HAMP domain DOO79_18555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_18555 PF00512 His Kinase A (phospho-acceptor) domain DOO79_18555 PF01627 Hpt domain DOO79_18555 PF00072 Response regulator receiver domain DOO79_18555 PF17149 Periplasmic sensor domain found in signal transduction proteins DOO79_18565 PF13581 Histidine kinase-like ATPase domain DOO79_18570 PF01740 STAS domain DOO79_18575 PF08678 Rsbr N terminal DOO79_18575 PF01740 STAS domain DOO79_18585 PF00183 Hsp90 protein DOO79_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_18590 PF12833 Helix-turn-helix domain DOO79_18600 PF05656 Protein of unknown function (DUF805) DOO79_18605 PF18073 Rubredoxin metal binding domain DOO79_18615 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DOO79_18620 PF00510 Cytochrome c oxidase subunit III DOO79_18625 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOO79_18630 PF06481 COX Aromatic Rich Motif DOO79_18630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOO79_18640 PF02401 LytB protein DOO79_18645 PF01252 Signal peptidase (SPase) II DOO79_18650 PF08264 Anticodon-binding domain of tRNA DOO79_18650 PF00133 tRNA synthetases class I (I, L, M and V) DOO79_18650 PF06827 Zinc finger found in FPG and IleRS DOO79_18655 PF01687 Riboflavin kinase DOO79_18655 PF06574 FAD synthetase DOO79_18660 PF03023 Lipid II flippase MurJ DOO79_18665 PF01649 Ribosomal protein S20 DOO79_18670 PF01018 GTP1/OBG DOO79_18670 PF01926 50S ribosome-binding GTPase DOO79_18675 PF01016 Ribosomal L27 protein DOO79_18680 PF00829 Ribosomal prokaryotic L21 protein DOO79_18685 PF17755 UvrA DNA-binding domain DOO79_18685 PF17760 UvrA interaction domain DOO79_18685 PF00005 ABC transporter DOO79_18700 PF00378 Enoyl-CoA hydratase/isomerase DOO79_18740 PF04376 Arginine-tRNA-protein transferase, N terminus DOO79_18740 PF04377 Arginine-tRNA-protein transferase, C terminus DOO79_18750 PF02222 ATP-grasp domain DOO79_18780 PF00730 HhH-GPD superfamily base excision DNA repair protein DOO79_18795 PF00072 Response regulator receiver domain DOO79_18795 PF00196 Bacterial regulatory proteins, luxR family DOO79_18800 PF07730 Histidine kinase DOO79_18815 PF03775 Septum formation inhibitor MinC, C-terminal domain DOO79_18815 PF05209 Septum formation inhibitor MinC, N-terminal domain DOO79_18820 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOO79_18825 PF03776 Septum formation topological specificity factor MinE DOO79_18835 PF00512 His Kinase A (phospho-acceptor) domain DOO79_18835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_18835 PF08521 Two-component sensor kinase N-terminal DOO79_18840 PF00486 Transcriptional regulatory protein, C terminal DOO79_18840 PF00072 Response regulator receiver domain DOO79_18855 PF08019 Phosphoethanolamine transferase EptA/EptB DOO79_18855 PF00884 Sulfatase DOO79_18870 PF07690 Major Facilitator Superfamily DOO79_18875 PF02347 Glycine cleavage system P-protein DOO79_18880 PF00135 Carboxylesterase family DOO79_18885 PF00248 Aldo/keto reductase family DOO79_18890 PF00199 Catalase DOO79_18890 PF06628 Catalase-related immune-responsive DOO79_18890 PF18011 C-terminal domain found in long catalases DOO79_18915 PF02311 AraC-like ligand binding domain DOO79_18915 PF12833 Helix-turn-helix domain DOO79_18955 PF17755 UvrA DNA-binding domain DOO79_18975 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_18985 PF00106 short chain dehydrogenase DOO79_18990 PF07971 Glycosyl hydrolase family 92 DOO79_18990 PF17678 Glycosyl hydrolase family 92 N-terminal domain DOO79_19005 PF00723 Glycosyl hydrolases family 15 DOO79_19015 PF01256 Carbohydrate kinase DOO79_19020 PF13456 Reverse transcriptase-like DOO79_19020 PF00300 Histidine phosphatase superfamily (branch 1) DOO79_19055 PF00271 Helicase conserved C-terminal domain DOO79_19055 PF04851 Type III restriction enzyme, res subunit DOO79_19055 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DOO79_19055 PF08463 EcoEI R protein C-terminal DOO79_19065 PF02384 N-6 DNA Methylase DOO79_19075 PF05598 Transposase domain (DUF772) DOO79_19080 PF01420 Type I restriction modification DNA specificity domain DOO79_19110 PF00440 Bacterial regulatory proteins, tetR family DOO79_19120 PF01433 Peptidase family M1 domain DOO79_19120 PF11838 ERAP1-like C-terminal domain DOO79_19125 PF00709 Adenylosuccinate synthetase DOO79_19135 PF01145 SPFH domain / Band 7 family DOO79_19140 PF12221 Bacterial membrane protein N terminal DOO79_19140 PF01145 SPFH domain / Band 7 family DOO79_19145 PF00072 Response regulator receiver domain DOO79_19150 PF01556 DnaJ C terminal domain DOO79_19150 PF00226 DnaJ domain DOO79_19160 PF08534 Redoxin DOO79_19170 PF00912 Transglycosylase DOO79_19170 PF00905 Penicillin binding protein transpeptidase domain DOO79_19170 PF06832 Penicillin-Binding Protein C-terminus Family DOO79_19190 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DOO79_19190 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DOO79_19190 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DOO79_19190 PF07703 Alpha-2-macroglobulin bait region domain DOO79_19190 PF00207 Alpha-2-macroglobulin family DOO79_19190 PF01835 MG2 domain DOO79_19190 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DOO79_19190 PF17962 Bacterial macroglobulin domain 6 DOO79_19205 PF07715 TonB-dependent Receptor Plug Domain DOO79_19205 PF00593 TonB dependent receptor DOO79_19210 PF04303 PrpF protein DOO79_19225 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DOO79_19230 PF00330 Aconitase family (aconitate hydratase) DOO79_19230 PF00694 Aconitase C-terminal domain DOO79_19235 PF00285 Citrate synthase, C-terminal domain DOO79_19245 PF02954 Bacterial regulatory protein, Fis family DOO79_19245 PF06506 Propionate catabolism activator DOO79_19245 PF00158 Sigma-54 interaction domain DOO79_19265 PF09115 DNA polymerase III, delta subunit, C terminal DOO79_19270 PF02618 YceG-like family DOO79_19275 PF00425 chorismate binding enzyme DOO79_19275 PF04715 Anthranilate synthase component I, N terminal region DOO79_19280 PF00109 Beta-ketoacyl synthase, N-terminal domain DOO79_19280 PF02801 Beta-ketoacyl synthase, C-terminal domain DOO79_19285 PF00550 Phosphopantetheine attachment site DOO79_19295 PF00698 Acyl transferase domain DOO79_19305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOO79_19305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOO79_19310 PF01783 Ribosomal L32p protein family DOO79_19315 PF02620 Large ribosomal RNA subunit accumulation protein YceD DOO79_19320 PF02545 Maf-like protein DOO79_19350 PF17863 AAA lid domain DOO79_19350 PF07726 ATPase family associated with various cellular activities (AAA) DOO79_19360 PF01841 Transglutaminase-like superfamily DOO79_19360 PF13559 Domain of unknown function (DUF4129) DOO79_19360 PF11992 Domain of unknown function (DUF3488) DOO79_19370 PF01230 HIT domain DOO79_19375 PF02132 RecR protein DOO79_19375 PF13662 Toprim domain DOO79_19380 PF02575 YbaB/EbfC DNA-binding family DOO79_19385 PF12169 DNA polymerase III subunits gamma and tau domain III DOO79_19385 PF12170 DNA polymerase III tau subunit V interacting with alpha DOO79_19385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DOO79_19400 PF02391 MoaE protein DOO79_19405 PF02597 ThiS family DOO79_19410 PF01967 MoaC family DOO79_19415 PF04055 Radical SAM superfamily DOO79_19415 PF06463 Molybdenum Cofactor Synthesis C DOO79_19420 PF12706 Beta-lactamase superfamily domain DOO79_19420 PF00753 Metallo-beta-lactamase superfamily DOO79_19430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOO79_19450 PF00929 Exonuclease DOO79_19455 PF00075 RNase H DOO79_19465 PF00753 Metallo-beta-lactamase superfamily DOO79_19465 PF16123 Hydroxyacylglutathione hydrolase C-terminus DOO79_19470 PF01476 LysM domain DOO79_19470 PF05257 CHAP domain DOO79_19490 PF00216 Bacterial DNA-binding protein DOO79_19495 PF02190 ATP-dependent protease La (LON) substrate-binding domain DOO79_19495 PF05362 Lon protease (S16) C-terminal proteolytic domain DOO79_19495 PF00004 ATPase family associated with various cellular activities (AAA) DOO79_19500 PF06689 ClpX C4-type zinc finger DOO79_19500 PF10431 C-terminal, D2-small domain, of ClpB protein DOO79_19500 PF07724 AAA domain (Cdc48 subfamily) DOO79_19505 PF00574 Clp protease DOO79_19510 PF05697 Bacterial trigger factor protein (TF) DOO79_19510 PF05698 Bacterial trigger factor protein (TF) C-terminus DOO79_19520 PF00989 PAS fold DOO79_19520 PF00512 His Kinase A (phospho-acceptor) domain DOO79_19520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_19550 PF00180 Isocitrate/isopropylmalate dehydrogenase DOO79_19560 PF00462 Glutaredoxin DOO79_19565 PF01435 Peptidase family M48 DOO79_19565 PF13181 Tetratricopeptide repeat DOO79_19570 PF00072 Response regulator receiver domain DOO79_19570 PF00486 Transcriptional regulatory protein, C terminal DOO79_19575 PF00989 PAS fold DOO79_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_19575 PF00512 His Kinase A (phospho-acceptor) domain DOO79_19575 PF11808 Phosphate regulon sensor protein PhoR DOO79_19580 PF13090 Polyphosphate kinase C-terminal domain 2 DOO79_19580 PF17941 Polyphosphate kinase C-terminal domain 1 DOO79_19580 PF02503 Polyphosphate kinase middle domain DOO79_19580 PF13089 Polyphosphate kinase N-terminal domain DOO79_19585 PF02541 Ppx/GppA phosphatase family DOO79_19590 PF00534 Glycosyl transferases group 1 DOO79_19590 PF13439 Glycosyltransferase Family 4 DOO79_19595 PF01569 PAP2 superfamily DOO79_19600 PF00149 Calcineurin-like phosphoesterase DOO79_19620 PF04305 Protein of unknown function (DUF455) DOO79_19625 PF00156 Phosphoribosyl transferase domain DOO79_19640 PF08245 Mur ligase middle domain DOO79_19640 PF02875 Mur ligase family, glutamate ligase domain DOO79_19650 PF00300 Histidine phosphatase superfamily (branch 1) DOO79_19655 PF10459 Peptidase S46 DOO79_19685 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_19685 PF00107 Zinc-binding dehydrogenase DOO79_19695 PF17850 CysA C-terminal regulatory domain DOO79_19695 PF00005 ABC transporter DOO79_19695 PF12857 TOBE-like domain DOO79_19700 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_19705 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_19715 PF00155 Aminotransferase class I and II DOO79_19725 PF00849 RNA pseudouridylate synthase DOO79_19735 PF05736 OprF membrane domain DOO79_19735 PF00691 OmpA family DOO79_19750 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_19750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOO79_19770 PF02798 Glutathione S-transferase, N-terminal domain DOO79_19770 PF00043 Glutathione S-transferase, C-terminal domain DOO79_19780 PF00056 lactate/malate dehydrogenase, NAD binding domain DOO79_19780 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DOO79_19785 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOO79_19800 PF01425 Amidase DOO79_19810 PF01474 Class-II DAHP synthetase family DOO79_19830 PF02600 Disulfide bond formation protein DsbB DOO79_19835 PF01196 Ribosomal protein L17 DOO79_19840 PF01000 RNA polymerase Rpb3/RpoA insert domain DOO79_19840 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DOO79_19840 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DOO79_19845 PF01479 S4 domain DOO79_19845 PF00163 Ribosomal protein S4/S9 N-terminal domain DOO79_19850 PF00411 Ribosomal protein S11 DOO79_19855 PF00416 Ribosomal protein S13/S18 DOO79_19860 PF00344 SecY translocase DOO79_19865 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DOO79_19870 PF00327 Ribosomal protein L30p/L7e DOO79_19875 PF03719 Ribosomal protein S5, C-terminal domain DOO79_19875 PF00333 Ribosomal protein S5, N-terminal domain DOO79_19880 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DOO79_19885 PF00347 Ribosomal protein L6 DOO79_19890 PF00410 Ribosomal protein S8 DOO79_19895 PF00253 Ribosomal protein S14p/S29e DOO79_19900 PF00673 ribosomal L5P family C-terminus DOO79_19900 PF00281 Ribosomal protein L5 DOO79_19905 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DOO79_19905 PF00467 KOW motif DOO79_19910 PF00238 Ribosomal protein L14p/L23e DOO79_19915 PF00366 Ribosomal protein S17 DOO79_19920 PF00831 Ribosomal L29 protein DOO79_19925 PF00252 Ribosomal protein L16p/L10e DOO79_19930 PF00189 Ribosomal protein S3, C-terminal domain DOO79_19930 PF07650 KH domain DOO79_19935 PF00237 Ribosomal protein L22p/L17e DOO79_19940 PF00203 Ribosomal protein S19 DOO79_19945 PF03947 Ribosomal Proteins L2, C-terminal domain DOO79_19945 PF00181 Ribosomal Proteins L2, RNA binding domain DOO79_19950 PF00276 Ribosomal protein L23 DOO79_19955 PF00573 Ribosomal protein L4/L1 family DOO79_19960 PF00297 Ribosomal protein L3 DOO79_19965 PF00338 Ribosomal protein S10p/S20e DOO79_19970 PF00009 Elongation factor Tu GTP binding domain DOO79_19970 PF03144 Elongation factor Tu domain 2 DOO79_19970 PF03143 Elongation factor Tu C-terminal domain DOO79_19975 PF00679 Elongation factor G C-terminus DOO79_19975 PF14492 Elongation Factor G, domain II DOO79_19975 PF03764 Elongation factor G, domain IV DOO79_19975 PF00009 Elongation factor Tu GTP binding domain DOO79_19975 PF03144 Elongation factor Tu domain 2 DOO79_19980 PF00177 Ribosomal protein S7p/S5e DOO79_19985 PF00164 Ribosomal protein S12/S23 DOO79_19990 PF00623 RNA polymerase Rpb1, domain 2 DOO79_19990 PF04983 RNA polymerase Rpb1, domain 3 DOO79_19990 PF04998 RNA polymerase Rpb1, domain 5 DOO79_19990 PF04997 RNA polymerase Rpb1, domain 1 DOO79_19990 PF05000 RNA polymerase Rpb1, domain 4 DOO79_19995 PF04560 RNA polymerase Rpb2, domain 7 DOO79_19995 PF04563 RNA polymerase beta subunit DOO79_19995 PF00562 RNA polymerase Rpb2, domain 6 DOO79_19995 PF04565 RNA polymerase Rpb2, domain 3 DOO79_19995 PF04561 RNA polymerase Rpb2, domain 2 DOO79_19995 PF10385 RNA polymerase beta subunit external 1 domain DOO79_20000 PF00542 Ribosomal protein L7/L12 C-terminal domain DOO79_20000 PF16320 Ribosomal protein L7/L12 dimerisation domain DOO79_20005 PF00466 Ribosomal protein L10 DOO79_20010 PF00687 Ribosomal protein L1p/L10e family DOO79_20015 PF00298 Ribosomal protein L11, RNA binding domain DOO79_20015 PF03946 Ribosomal protein L11, N-terminal domain DOO79_20020 PF02357 Transcription termination factor nusG DOO79_20020 PF00467 KOW motif DOO79_20025 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DOO79_20035 PF00009 Elongation factor Tu GTP binding domain DOO79_20035 PF03143 Elongation factor Tu C-terminal domain DOO79_20035 PF03144 Elongation factor Tu domain 2 DOO79_20055 PF01926 50S ribosome-binding GTPase DOO79_20055 PF06071 Protein of unknown function (DUF933) DOO79_20060 PF01195 Peptidyl-tRNA hydrolase DOO79_20065 PF14693 Ribosomal protein TL5, C-terminal domain DOO79_20065 PF01386 Ribosomal L25p family DOO79_20070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DOO79_20070 PF14572 Phosphoribosyl synthetase-associated domain DOO79_20080 PF08544 GHMP kinases C terminal DOO79_20080 PF00288 GHMP kinases N terminal domain DOO79_20085 PF03550 Outer membrane lipoprotein LolB DOO79_20095 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DOO79_20095 PF01488 Shikimate / quinate 5-dehydrogenase DOO79_20095 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DOO79_20100 PF03462 PCRF domain DOO79_20100 PF00472 RF-1 domain DOO79_20120 PF03976 Polyphosphate kinase 2 (PPK2) DOO79_20130 PF00708 Acylphosphatase DOO79_20140 PF03631 Virulence factor BrkB DOO79_20145 PF03358 NADPH-dependent FMN reductase DOO79_20155 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain DOO79_20155 PF17189 Glycosyl hydrolase family 30 beta sandwich domain DOO79_20165 PF04073 Aminoacyl-tRNA editing domain DOO79_20170 PF00082 Subtilase family DOO79_20170 PF04151 Bacterial pre-peptidase C-terminal domain DOO79_20180 PF00082 Subtilase family DOO79_20180 PF04151 Bacterial pre-peptidase C-terminal domain DOO79_20190 PF01063 Amino-transferase class IV DOO79_20205 PF02233 NAD(P) transhydrogenase beta subunit DOO79_20210 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DOO79_20230 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DOO79_20230 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DOO79_20230 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DOO79_20260 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOO79_20260 PF00476 DNA polymerase family A DOO79_20260 PF01367 5'-3' exonuclease, C-terminal SAM fold DOO79_20260 PF01612 3'-5' exonuclease DOO79_20265 PF00293 NUDIX domain DOO79_20275 PF00561 alpha/beta hydrolase fold DOO79_20280 PF17827 PrmC N-terminal domain DOO79_20280 PF05175 Methyltransferase small domain DOO79_20285 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOO79_20285 PF00578 AhpC/TSA family DOO79_20290 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOO79_20290 PF13192 Thioredoxin domain DOO79_20295 PF03466 LysR substrate binding domain DOO79_20295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_20305 PF01272 Transcription elongation factor, GreA/GreB, C-term DOO79_20305 PF14760 Rnk N-terminus DOO79_20310 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOO79_20320 PF01625 Peptide methionine sulfoxide reductase DOO79_20335 PF17149 Periplasmic sensor domain found in signal transduction proteins DOO79_20335 PF00072 Response regulator receiver domain DOO79_20335 PF00512 His Kinase A (phospho-acceptor) domain DOO79_20335 PF00672 HAMP domain DOO79_20335 PF01627 Hpt domain DOO79_20335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_20340 PF00990 Diguanylate cyclase, GGDEF domain DOO79_20340 PF00072 Response regulator receiver domain DOO79_20355 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DOO79_20355 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOO79_20365 PF00892 EamA-like transporter family DOO79_20385 PF01728 FtsJ-like methyltransferase DOO79_20385 PF18125 RlmM ferredoxin-like domain DOO79_20395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOO79_20395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOO79_20400 PF08450 SMP-30/Gluconolactonase/LRE-like region DOO79_20420 PF00378 Enoyl-CoA hydratase/isomerase DOO79_20425 PF00171 Aldehyde dehydrogenase family DOO79_20430 PF00501 AMP-binding enzyme DOO79_20430 PF13193 AMP-binding enzyme C-terminal domain DOO79_20435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_20435 PF03466 LysR substrate binding domain DOO79_20440 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOO79_20440 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DOO79_20445 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOO79_20450 PF07729 FCD domain DOO79_20450 PF00392 Bacterial regulatory proteins, gntR family DOO79_20470 PF01494 FAD binding domain DOO79_20475 PF01494 FAD binding domain DOO79_20490 PF01923 Cobalamin adenosyltransferase DOO79_20495 PF00850 Histone deacetylase domain DOO79_20500 PF04453 LPS transport system D DOO79_20500 PF03968 OstA-like protein DOO79_20505 PF09312 SurA N-terminal domain DOO79_20505 PF00639 PPIC-type PPIASE domain DOO79_20510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DOO79_20515 PF00398 Ribosomal RNA adenine dimethylase DOO79_20520 PF04379 ApaG domain DOO79_20525 PF00149 Calcineurin-like phosphoesterase DOO79_20530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOO79_20530 PF00005 ABC transporter DOO79_20540 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_20545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOO79_20550 PF00296 Luciferase-like monooxygenase DOO79_20570 PF03358 NADPH-dependent FMN reductase DOO79_20575 PF00296 Luciferase-like monooxygenase DOO79_20585 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_20590 PF00005 ABC transporter DOO79_20595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_20595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DOO79_20600 PF00158 Sigma-54 interaction domain DOO79_20605 PF00186 Dihydrofolate reductase DOO79_20615 PF00303 Thymidylate synthase DOO79_20620 PF01790 Prolipoprotein diacylglyceryl transferase DOO79_20650 PF00300 Histidine phosphatase superfamily (branch 1) DOO79_20655 PF04493 Endonuclease V DOO79_20665 PF02678 Pirin DOO79_20665 PF05726 Pirin C-terminal cupin domain DOO79_20680 PF05726 Pirin C-terminal cupin domain DOO79_20680 PF02678 Pirin DOO79_20685 PF13722 5TM C-terminal transporter carbon starvation CstA DOO79_20685 PF02554 Carbon starvation protein CstA DOO79_20690 PF04328 Selenoprotein, putative DOO79_20740 PF02625 XdhC and CoxI family DOO79_20740 PF13478 XdhC Rossmann domain DOO79_20745 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DOO79_20745 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DOO79_20750 PF03450 CO dehydrogenase flavoprotein C-terminal domain DOO79_20750 PF00941 FAD binding domain in molybdopterin dehydrogenase DOO79_20755 PF00111 2Fe-2S iron-sulfur cluster binding domain DOO79_20755 PF01799 [2Fe-2S] binding domain DOO79_20755 PF10518 TAT (twin-arginine translocation) pathway signal sequence DOO79_20760 PF14765 Polyketide synthase dehydratase DOO79_20760 PF00107 Zinc-binding dehydrogenase DOO79_20760 PF00550 Phosphopantetheine attachment site DOO79_20760 PF08659 KR domain DOO79_20760 PF02801 Beta-ketoacyl synthase, C-terminal domain DOO79_20760 PF00109 Beta-ketoacyl synthase, N-terminal domain DOO79_20760 PF16197 Ketoacyl-synthetase C-terminal extension DOO79_20760 PF00698 Acyl transferase domain DOO79_20760 PF08240 Alcohol dehydrogenase GroES-like domain DOO79_20765 PF00563 EAL domain DOO79_20765 PF01590 GAF domain DOO79_20765 PF00360 Phytochrome region DOO79_20765 PF00990 Diguanylate cyclase, GGDEF domain DOO79_20770 PF00436 Single-strand binding protein family DOO79_20775 PF00348 Polyprenyl synthetase DOO79_20790 PF08245 Mur ligase middle domain DOO79_20790 PF02875 Mur ligase family, glutamate ligase domain DOO79_20805 PF00696 Amino acid kinase family DOO79_20805 PF01842 ACT domain DOO79_20810 PF02567 Phenazine biosynthesis-like protein DOO79_20825 PF02566 OsmC-like protein DOO79_20830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOO79_20830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOO79_20835 PF03652 Holliday junction resolvase DOO79_20840 PF02622 Uncharacterized ACR, COG1678 DOO79_20850 PF13673 Acetyltransferase (GNAT) domain DOO79_20850 PF13302 Acetyltransferase (GNAT) domain DOO79_20850 PF03352 Methyladenine glycosylase DOO79_20850 PF00117 Glutamine amidotransferase class-I DOO79_20850 PF00958 GMP synthase C terminal domain DOO79_20860 PF03211 Pectate lyase DOO79_20865 PF00437 Type II/IV secretion system protein DOO79_20870 PF00437 Type II/IV secretion system protein DOO79_20875 PF01168 Alanine racemase, N-terminal domain DOO79_20880 PF03807 NADP oxidoreductase coenzyme F420-dependent DOO79_20880 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOO79_20890 PF01551 Peptidase family M23 DOO79_20910 PF01965 DJ-1/PfpI family DOO79_20920 PF02082 Transcriptional regulator DOO79_20925 PF01458 Uncharacterized protein family (UPF0051) DOO79_20930 PF00005 ABC transporter DOO79_20935 PF01458 Uncharacterized protein family (UPF0051) DOO79_20940 PF00266 Aminotransferase class-V DOO79_20950 PF00355 Rieske [2Fe-2S] domain DOO79_20955 PF07715 TonB-dependent Receptor Plug Domain DOO79_20955 PF00593 TonB dependent receptor DOO79_20960 PF13640 2OG-Fe(II) oxygenase superfamily DOO79_20960 PF18331 PKHD-type hydroxylase C-terminal domain DOO79_20985 PF02424 ApbE family DOO79_20990 PF00175 Oxidoreductase NAD-binding domain DOO79_20990 PF00667 FAD binding domain DOO79_20990 PF00258 Flavodoxin DOO79_21020 PF01636 Phosphotransferase enzyme family DOO79_21025 PF00483 Nucleotidyl transferase DOO79_21030 PF00308 Bacterial dnaA protein DOO79_21035 PF01594 AI-2E family transporter DOO79_21045 PF00586 AIR synthase related protein, N-terminal domain DOO79_21045 PF02769 AIR synthase related protein, C-terminal domain DOO79_21055 PF00551 Formyl transferase DOO79_21075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOO79_21080 PF01722 BolA-like protein DOO79_21085 PF00571 CBS domain DOO79_21085 PF01380 SIS domain DOO79_21100 PF03968 OstA-like protein DOO79_21105 PF00005 ABC transporter DOO79_21110 PF04963 Sigma-54 factor, core binding domain DOO79_21110 PF00309 Sigma-54 factor, Activator interacting domain (AID) DOO79_21110 PF04552 Sigma-54, DNA binding domain DOO79_21115 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DOO79_21120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOO79_21125 PF07475 HPr Serine kinase C-terminal domain DOO79_21125 PF02603 HPr Serine kinase N terminus DOO79_21130 PF03668 P-loop ATPase protein family DOO79_21140 PF00381 PTS HPr component phosphorylation site DOO79_21145 PF00391 PEP-utilising enzyme, mobile domain DOO79_21145 PF05524 PEP-utilising enzyme, N-terminal DOO79_21145 PF02896 PEP-utilising enzyme, TIM barrel domain DOO79_21155 PF00571 CBS domain DOO79_21155 PF01769 Divalent cation transporter DOO79_21155 PF03448 MgtE intracellular N domain DOO79_21160 PF00756 Putative esterase DOO79_21170 PF02322 Cytochrome bd terminal oxidase subunit II DOO79_21175 PF01654 Cytochrome bd terminal oxidase subunit I DOO79_21195 PF00324 Amino acid permease DOO79_21205 PF00544 Pectate lyase DOO79_21215 PF00561 alpha/beta hydrolase fold DOO79_21225 PF00196 Bacterial regulatory proteins, luxR family DOO79_21230 PF00324 Amino acid permease DOO79_21260 PF12706 Beta-lactamase superfamily domain DOO79_21320 PF00376 MerR family regulatory protein DOO79_21320 PF09278 MerR, DNA binding DOO79_21325 PF07690 Major Facilitator Superfamily DOO79_21335 PF03738 Glutathionylspermidine synthase preATP-grasp DOO79_21360 PF04012 PspA/IM30 family DOO79_21370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DOO79_21370 PF01243 Pyridoxamine 5'-phosphate oxidase DOO79_21375 PF01202 Shikimate kinase DOO79_21380 PF01761 3-dehydroquinate synthase DOO79_21390 PF01208 Uroporphyrinogen decarboxylase (URO-D) DOO79_21395 PF07690 Major Facilitator Superfamily DOO79_21400 PF00072 Response regulator receiver domain DOO79_21400 PF01627 Hpt domain DOO79_21400 PF17149 Periplasmic sensor domain found in signal transduction proteins DOO79_21400 PF00672 HAMP domain DOO79_21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_21400 PF00512 His Kinase A (phospho-acceptor) domain DOO79_21405 PF17149 Periplasmic sensor domain found in signal transduction proteins DOO79_21405 PF00512 His Kinase A (phospho-acceptor) domain DOO79_21405 PF01627 Hpt domain DOO79_21405 PF00072 Response regulator receiver domain DOO79_21405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_21405 PF00672 HAMP domain DOO79_21415 PF00072 Response regulator receiver domain DOO79_21415 PF01627 Hpt domain DOO79_21415 PF00512 His Kinase A (phospho-acceptor) domain DOO79_21415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_21420 PF04264 YceI-like domain DOO79_21440 PF03315 Serine dehydratase beta chain DOO79_21440 PF03313 Serine dehydratase alpha chain DOO79_21445 PF12697 Alpha/beta hydrolase family DOO79_21455 PF00696 Amino acid kinase family DOO79_21455 PF00742 Homoserine dehydrogenase DOO79_21455 PF03447 Homoserine dehydrogenase, NAD binding domain DOO79_21460 PF01053 Cys/Met metabolism PLP-dependent enzyme DOO79_21465 PF00561 alpha/beta hydrolase fold DOO79_21470 PF01551 Peptidase family M23 DOO79_21470 PF08525 Opacity-associated protein A N-terminal motif DOO79_21470 PF01476 LysM domain DOO79_21475 PF16658 Class II release factor RF3, C-terminal domain DOO79_21475 PF00009 Elongation factor Tu GTP binding domain DOO79_21480 PF03006 Haemolysin-III related DOO79_21485 PF05170 AsmA family DOO79_21490 PF00571 CBS domain DOO79_21490 PF00478 IMP dehydrogenase / GMP reductase domain DOO79_21495 PF00535 Glycosyl transferase family 2 DOO79_21500 PF00912 Transglycosylase DOO79_21505 PF01430 Hsp33 protein DOO79_21515 PF07715 TonB-dependent Receptor Plug Domain DOO79_21515 PF00593 TonB dependent receptor DOO79_21530 PF00440 Bacterial regulatory proteins, tetR family DOO79_21535 PF00561 alpha/beta hydrolase fold DOO79_21540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOO79_21540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOO79_21540 PF09317 Domain of unknown function (DUF1974) DOO79_21570 PF01597 Glycine cleavage H-protein DOO79_21575 PF01571 Aminomethyltransferase folate-binding domain DOO79_21575 PF08669 Glycine cleavage T-protein C-terminal barrel domain DOO79_21595 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DOO79_21600 PF03819 MazG nucleotide pyrophosphohydrolase domain DOO79_21605 PF00459 Inositol monophosphatase family DOO79_21610 PF00293 NUDIX domain DOO79_21615 PF00202 Aminotransferase class-III DOO79_21620 PF04452 RNA methyltransferase DOO79_21625 PF02685 Glucokinase DOO79_21640 PF01476 LysM domain DOO79_21640 PF00704 Glycosyl hydrolases family 18 DOO79_21655 PF14310 Fibronectin type III-like domain DOO79_21655 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOO79_21655 PF00933 Glycosyl hydrolase family 3 N terminal domain DOO79_21655 PF07691 PA14 domain DOO79_21660 PF00005 ABC transporter DOO79_21660 PF03412 Peptidase C39 family DOO79_21660 PF00664 ABC transporter transmembrane region DOO79_21690 PF17678 Glycosyl hydrolase family 92 N-terminal domain DOO79_21690 PF07971 Glycosyl hydrolase family 92 DOO79_21695 PF01301 Glycosyl hydrolases family 35 DOO79_21730 PF03932 CutC family DOO79_21735 PF01112 Asparaginase DOO79_21750 PF13302 Acetyltransferase (GNAT) domain DOO79_21765 PF00072 Response regulator receiver domain DOO79_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_21765 PF01627 Hpt domain DOO79_21765 PF01584 CheW-like domain DOO79_21765 PF02895 Signal transducing histidine kinase, homodimeric domain DOO79_21770 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DOO79_21770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_21775 PF01584 CheW-like domain DOO79_21780 PF00072 Response regulator receiver domain DOO79_21785 PF00072 Response regulator receiver domain DOO79_21790 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DOO79_21790 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DOO79_21800 PF03747 ADP-ribosylglycohydrolase DOO79_21805 PF00814 Glycoprotease family DOO79_21810 PF13307 Helicase C-terminal domain DOO79_21810 PF04851 Type III restriction enzyme, res subunit DOO79_21820 PF14814 Bifunctional transglycosylase second domain DOO79_21820 PF00912 Transglycosylase DOO79_21820 PF00905 Penicillin binding protein transpeptidase domain DOO79_21825 PF00535 Glycosyl transferase family 2 DOO79_21840 PF02824 TGS domain DOO79_21840 PF04607 Region found in RelA / SpoT proteins DOO79_21840 PF13291 ACT domain DOO79_21845 PF08042 PqqA family DOO79_21850 PF12706 Beta-lactamase superfamily domain DOO79_21855 PF03070 TENA/THI-4/PQQC family DOO79_21860 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DOO79_21865 PF13186 Iron-sulfur cluster-binding domain DOO79_21865 PF04055 Radical SAM superfamily DOO79_21890 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DOO79_21890 PF04408 Helicase associated domain (HA2) DOO79_21890 PF00271 Helicase conserved C-terminal domain DOO79_21890 PF00270 DEAD/DEAH box helicase DOO79_21890 PF11898 Domain of unknown function (DUF3418) DOO79_21895 PF00210 Ferritin-like domain DOO79_21905 PF00570 HRDC domain DOO79_21905 PF09382 RQC domain DOO79_21905 PF16124 RecQ zinc-binding DOO79_21905 PF00271 Helicase conserved C-terminal domain DOO79_21905 PF00270 DEAD/DEAH box helicase DOO79_21940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_21940 PF00672 HAMP domain DOO79_21940 PF02203 Tar ligand binding domain homologue DOO79_21960 PF13581 Histidine kinase-like ATPase domain DOO79_21960 PF07536 HWE histidine kinase DOO79_21960 PF13426 PAS domain DOO79_21965 PF06508 Queuosine biosynthesis protein QueC DOO79_21975 PF04055 Radical SAM superfamily DOO79_21985 PF00691 OmpA family DOO79_21990 PF07676 WD40-like Beta Propeller Repeat DOO79_21990 PF04052 TolB amino-terminal domain DOO79_22000 PF02472 Biopolymer transport protein ExbD/TolR DOO79_22005 PF01618 MotA/TolQ/ExbB proton channel family DOO79_22010 PF03061 Thioesterase superfamily DOO79_22015 PF05491 RuvB C-terminal winged helix domain DOO79_22015 PF17864 RuvB AAA lid domain DOO79_22015 PF05496 Holliday junction DNA helicase RuvB P-loop domain DOO79_22025 PF02705 K+ potassium transporter DOO79_22030 PF07499 RuvA, C-terminal domain DOO79_22030 PF01330 RuvA N terminal domain DOO79_22035 PF02075 Crossover junction endodeoxyribonuclease RuvC DOO79_22040 PF01709 Transcriptional regulator DOO79_22055 PF01336 OB-fold nucleic acid binding domain DOO79_22055 PF00152 tRNA synthetases class II (D, K and N) DOO79_22055 PF02938 GAD domain DOO79_22070 PF07690 Major Facilitator Superfamily DOO79_22085 PF04185 Phosphoesterase family DOO79_22085 PF05506 Domain of unknown function (DUF756) DOO79_22105 PF03466 LysR substrate binding domain DOO79_22105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOO79_22115 PF00005 ABC transporter DOO79_22115 PF12848 ABC transporter DOO79_22120 PF00593 TonB dependent receptor DOO79_22120 PF07715 TonB-dependent Receptor Plug Domain DOO79_22140 PF00593 TonB dependent receptor DOO79_22140 PF07715 TonB-dependent Receptor Plug Domain DOO79_22145 PF00067 Cytochrome P450 DOO79_22155 PF00999 Sodium/hydrogen exchanger family DOO79_22155 PF02254 TrkA-N domain DOO79_22180 PF00593 TonB dependent receptor DOO79_22180 PF07660 Secretin and TonB N terminus short domain DOO79_22180 PF07715 TonB-dependent Receptor Plug Domain DOO79_22190 PF06276 Ferric iron reductase FhuF-like transporter DOO79_22190 PF04183 IucA / IucC family DOO79_22195 PF07690 Major Facilitator Superfamily DOO79_22205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DOO79_22205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOO79_22235 PF02277 Phosphoribosyltransferase DOO79_22240 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DOO79_22245 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOO79_22245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOO79_22250 PF00155 Aminotransferase class I and II DOO79_22260 PF12557 Cob(I)alamin adenosyltransferase N terminal DOO79_22260 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DOO79_22275 PF00593 TonB dependent receptor DOO79_22275 PF07715 TonB-dependent Receptor Plug Domain DOO79_22280 PF00004 ATPase family associated with various cellular activities (AAA) DOO79_22280 PF07724 AAA domain (Cdc48 subfamily) DOO79_22280 PF17871 AAA lid domain DOO79_22280 PF10431 C-terminal, D2-small domain, of ClpB protein DOO79_22280 PF02861 Clp amino terminal domain, pathogenicity island component DOO79_22285 PF00005 ABC transporter DOO79_22290 PF00528 Binding-protein-dependent transport system inner membrane component DOO79_22295 PF09084 NMT1/THI5 like DOO79_22300 PF00248 Aldo/keto reductase family DOO79_22305 PF00296 Luciferase-like monooxygenase DOO79_22310 PF00593 TonB dependent receptor DOO79_22310 PF07715 TonB-dependent Receptor Plug Domain DOO79_22320 PF01541 GIY-YIG catalytic domain DOO79_22355 PF07715 TonB-dependent Receptor Plug Domain DOO79_22355 PF00593 TonB dependent receptor DOO79_22365 PF02358 Trehalose-phosphatase DOO79_22370 PF00723 Glycosyl hydrolases family 15 DOO79_22375 PF00982 Glycosyltransferase family 20 DOO79_22380 PF01011 PQQ enzyme repeat DOO79_22390 PF02203 Tar ligand binding domain homologue DOO79_22390 PF00672 HAMP domain DOO79_22390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOO79_22395 PF04134 Protein of unknown function, DUF393 DOO79_22410 PF00849 RNA pseudouridylate synthase DOO79_22415 PF13525 Outer membrane lipoprotein DOO79_22425 PF02540 NAD synthase DOO79_22425 PF00795 Carbon-nitrogen hydrolase DOO79_22435 PF02629 CoA binding domain DOO79_22435 PF00549 CoA-ligase DOO79_22440 PF00549 CoA-ligase DOO79_22440 PF08442 ATP-grasp domain DOO79_22445 PF00512 His Kinase A (phospho-acceptor) domain DOO79_22445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOO79_22450 PF00158 Sigma-54 interaction domain DOO79_22450 PF00072 Response regulator receiver domain DOO79_22450 PF02954 Bacterial regulatory protein, Fis family DOO79_22460 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DOO79_22460 PF00437 Type II/IV secretion system protein DOO79_22470 PF00437 Type II/IV secretion system protein DOO79_22470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DOO79_22475 PF07963 Prokaryotic N-terminal methylation motif DOO79_22475 PF00114 Pilin (bacterial filament) DOO79_22480 PF07963 Prokaryotic N-terminal methylation motif DOO79_22480 PF00114 Pilin (bacterial filament) DOO79_22485 PF00482 Type II secretion system (T2SS), protein F DOO79_22490 PF01478 Type IV leader peptidase family DOO79_22490 PF06750 Bacterial Peptidase A24 N-terminal domain DOO79_22495 PF01121 Dephospho-CoA kinase DOO79_22510 PF00005 ABC transporter DOO79_22510 PF03412 Peptidase C39 family DOO79_22510 PF00664 ABC transporter transmembrane region DOO79_22515 PF00155 Aminotransferase class I and II DOO79_22545 PF01522 Polysaccharide deacetylase DOO79_22550 PF00462 Glutaredoxin DOO79_22565 PF01979 Amidohydrolase family DOO79_22570 PF01979 Amidohydrolase family DOO79_22605 PF02645 Uncharacterised protein, DegV family COG1307 DOO79_22610 PF01327 Polypeptide deformylase DOO79_22640 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DOO79_22645 PF01270 Glycosyl hydrolases family 8 DOO79_22650 PF03170 Bacterial cellulose synthase subunit DOO79_22655 PF00535 Glycosyl transferase family 2 DOO79_22655 PF03552 Cellulose synthase DOO79_22655 PF07238 PilZ domain DOO79_22670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DOO79_22670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DOO79_22725 PF00593 TonB dependent receptor DOO79_22725 PF07715 TonB-dependent Receptor Plug Domain DOO79_22735 PF07702 UTRA domain DOO79_22735 PF00392 Bacterial regulatory proteins, gntR family DOO79_22750 PF03958 Bacterial type II/III secretion system short domain DOO79_22750 PF00263 Bacterial type II and III secretion system protein DOO79_22760 PF10741 Type II secretion system (T2SS), protein M subtype b DOO79_22765 PF05137 Fimbrial assembly protein (PilN) DOO79_22770 PF03934 Type II secretion system (T2SS), protein K DOO79_22780 PF07963 Prokaryotic N-terminal methylation motif DOO79_22785 PF12019 Type II transport protein GspH DOO79_22790 PF08334 Type II secretion system (T2SS), protein G DOO79_22795 PF00482 Type II secretion system (T2SS), protein F DOO79_22805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DOO79_22805 PF00437 Type II/IV secretion system protein DOO79_22810 PF04151 Bacterial pre-peptidase C-terminal domain DOO79_22810 PF00082 Subtilase family DOO79_22815 PF03895 YadA-like membrane anchor domain DOO79_22815 PF13018 Extended Signal Peptide of Type V secretion system DOO79_22815 PF05662 Coiled stalk of trimeric autotransporter adhesin DOO79_22815 PF05658 Head domain of trimeric autotransporter adhesin DOO79_22820 PF00082 Subtilase family DOO79_22820 PF04151 Bacterial pre-peptidase C-terminal domain DOO79_22825 PF13018 Extended Signal Peptide of Type V secretion system DOO79_22825 PF03895 YadA-like membrane anchor domain DOO79_22825 PF05658 Head domain of trimeric autotransporter adhesin DOO79_22825 PF05662 Coiled stalk of trimeric autotransporter adhesin DOO79_22830 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DOO79_22830 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DOO79_22830 PF02769 AIR synthase related protein, C-terminal domain DOO79_22840 PF10411 Disulfide bond isomerase protein N-terminus DOO79_22840 PF13098 Thioredoxin-like domain DOO79_22850 PF00589 Phage integrase family DOO79_22850 PF02899 Phage integrase, N-terminal SAM-like domain DOO79_22865 PF03739 Lipopolysaccharide export system permease LptF/LptG DOO79_22875 PF00883 Cytosol aminopeptidase family, catalytic domain DOO79_22875 PF02789 Cytosol aminopeptidase family, N-terminal domain DOO79_22890 PF10458 Valyl tRNA synthetase tRNA binding arm DOO79_22890 PF08264 Anticodon-binding domain of tRNA DOO79_22890 PF00133 tRNA synthetases class I (I, L, M and V) DOO79_22905 PF07715 TonB-dependent Receptor Plug Domain DOO79_22905 PF00593 TonB dependent receptor DOO79_22910 PF01464 Transglycosylase SLT domain DOO79_22915 PF00544 Pectate lyase DOO79_22930 PF01066 CDP-alcohol phosphatidyltransferase DOO79_22940 PF03129 Anticodon binding domain DOO79_22940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOO79_22940 PF04073 Aminoacyl-tRNA editing domain DOO79_22945 PF00816 H-NS histone family DOO79_22955 PF02405 Permease MlaE DOO79_22960 PF00005 ABC transporter DOO79_22965 PF03886 ABC-type transport auxiliary lipoprotein component DOO79_22965 PF02470 MlaD protein DOO79_22985 PF05045 Rhamnan synthesis protein F DOO79_22985 PF14307 Glycosyltransferase WbsX DOO79_22990 PF01144 Coenzyme A transferase DOO79_22995 PF01144 Coenzyme A transferase DOO79_23000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOO79_23000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOO79_23000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOO79_23000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOO79_23005 PF00483 Nucleotidyl transferase DOO79_23005 PF01050 Mannose-6-phosphate isomerase DOO79_23010 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOO79_23010 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOO79_23010 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOO79_23015 PF04321 RmlD substrate binding domain DOO79_23020 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DOO79_23025 PF00483 Nucleotidyl transferase DOO79_23030 PF16363 GDP-mannose 4,6 dehydratase DOO79_23035 PF01012 Electron transfer flavoprotein domain DOO79_23040 PF00766 Electron transfer flavoprotein FAD-binding domain DOO79_23040 PF01012 Electron transfer flavoprotein domain DOO79_23050 PF01040 UbiA prenyltransferase family DOO79_23055 PF04030 D-arabinono-1,4-lactone oxidase DOO79_23055 PF01565 FAD binding domain DOO79_23070 PF01370 NAD dependent epimerase/dehydratase family DOO79_23120 PF00005 ABC transporter DOO79_23210 PF03695 Uncharacterised protein family (UPF0149) DOO79_23210 PF02810 SEC-C motif DOO79_23255 PF06412 Conjugal transfer protein TraD DOO79_23260 PF07820 TraC-like protein DOO79_23265 PF03389 MobA/MobL family DOO79_23265 PF01443 Viral (Superfamily 1) RNA helicase DOO79_23265 PF17841 BID domain of Bartonella effector protein (Bep) DOO79_23280 PF13180 PDZ domain DOO79_23280 PF00595 PDZ domain DOO79_23315 PF05598 Transposase domain (DUF772) DOO79_23320 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DOO79_23320 PF00171 Aldehyde dehydrogenase family DOO79_23320 PF01619 Proline dehydrogenase DOO79_23320 PF14850 DNA-binding domain of Proline dehydrogenase DOO79_23345 PF00145 C-5 cytosine-specific DNA methylase DOO79_23365 PF13700 Domain of unknown function (DUF4158) DOO79_23365 PF01526 Tn3 transposase DDE domain DOO79_23395 PF13614 AAA domain DOO79_23410 PF00239 Resolvase, N terminal domain DOO79_23410 PF02796 Helix-turn-helix domain of resolvase DOO79_23455 PF01936 NYN domain DOO79_23455 PF09722 Protein of unknown function (DUF2384) DOO79_23520 PF00171 Aldehyde dehydrogenase family DOO79_23520 PF14850 DNA-binding domain of Proline dehydrogenase DOO79_23520 PF01619 Proline dehydrogenase DOO79_23520 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DOO79_23535 PF02810 SEC-C motif DOO79_23535 PF03695 Uncharacterised protein family (UPF0149) DOO79_23555 PF05394 Avirulence protein DOO79_23730 PF04610 TrbL/VirB6 plasmid conjugal transfer protein DOO79_23740 PF03524 Conjugal transfer protein DOO79_23745 PF03743 Bacterial conjugation TrbI-like protein DOO79_23750 PF00437 Type II/IV secretion system protein DOO79_23755 PF01464 Transglycosylase SLT domain DOO79_23780 PF08751 TrwC relaxase DOO79_23780 PF18340 DNA relaxase TraI 2B/2B-like domain DOO79_23780 PF07057 DNA helicase TraI DOO79_23780 PF18272 single-stranded DNA binding TraI N-terminal subdomain DOO79_23840 PF07015 VirC1 protein DOO79_23895 PF13614 AAA domain DOO79_23970 PF01850 PIN domain DOO79_23980 PF03695 Uncharacterised protein family (UPF0149) DOO79_23980 PF02810 SEC-C motif DOO79_24025 PF06412 Conjugal transfer protein TraD