locus-tag class description XSP_000001 PF11638 DnaA N-terminal domain XSP_000001 PF08299 Bacterial dnaA protein helix-turn-helix XSP_000001 PF00308 Bacterial dnaA protein XSP_000002 PF02768 DNA polymerase III beta subunit, C-terminal domain XSP_000002 PF02767 DNA polymerase III beta subunit, central domain XSP_000002 PF00712 DNA polymerase III beta subunit, N-terminal domain XSP_000003 PF02463 RecF/RecN/SMC N terminal domain XSP_000004 PF18053 DNA gyrase B subunit insert domain XSP_000004 PF00986 DNA gyrase B subunit, carboxyl terminus XSP_000004 PF00204 DNA gyrase B XSP_000004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000004 PF01751 Toprim domain XSP_000006 PF01435 Peptidase family M48 XSP_000008 PF03544 Gram-negative bacterial TonB protein C-terminal XSP_000009 PF01618 MotA/TolQ/ExbB proton channel family XSP_000010 PF02472 Biopolymer transport protein ExbD/TolR XSP_000011 PF02472 Biopolymer transport protein ExbD/TolR XSP_000013 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XSP_000015 PF13396 Phospholipase_D-nuclease N-terminal XSP_000015 PF13091 PLD-like domain XSP_000016 PF04055 Radical SAM superfamily XSP_000018 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XSP_000021 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_000021 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_000022 PF13180 PDZ domain XSP_000022 PF03572 Peptidase family S41 XSP_000023 PF01551 Peptidase family M23 XSP_000025 PF04389 Peptidase family M28 XSP_000027 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000028 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000029 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000030 PF00107 Zinc-binding dehydrogenase XSP_000030 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000032 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XSP_000032 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000033 PF00310 Glutamine amidotransferases class-II XSP_000033 PF04898 Glutamate synthase central domain XSP_000033 PF01645 Conserved region in glutamate synthase XSP_000033 PF01493 GXGXG motif XSP_000036 PF00398 Ribosomal RNA adenine dimethylase XSP_000040 PF02525 Flavodoxin-like fold XSP_000041 PF03466 LysR substrate binding domain XSP_000041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000043 PF10091 Putative glucoamylase XSP_000043 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XSP_000043 PF06165 Glycosyltransferase family 36 XSP_000046 PF00270 DEAD/DEAH box helicase XSP_000046 PF00271 Helicase conserved C-terminal domain XSP_000046 PF09369 Domain of unknown function (DUF1998) XSP_000047 PF03006 Haemolysin-III related XSP_000054 PF01431 Peptidase family M13 XSP_000054 PF05649 Peptidase family M13 XSP_000056 PF03466 LysR substrate binding domain XSP_000056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000064 PF04542 Sigma-70 region 2 XSP_000064 PF08281 Sigma-70, region 4 XSP_000071 PF01638 HxlR-like helix-turn-helix XSP_000072 PF05532 CsbD-like XSP_000073 PF00072 Response regulator receiver domain XSP_000073 PF13188 PAS domain XSP_000073 PF08448 PAS fold XSP_000073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000073 PF00512 His Kinase A (phospho-acceptor) domain XSP_000078 PF09297 NADH pyrophosphatase zinc ribbon domain XSP_000078 PF00293 NUDIX domain XSP_000079 PF07859 alpha/beta hydrolase fold XSP_000081 PF00085 Thioredoxin XSP_000083 PF08946 Osmosensory transporter coiled coil XSP_000083 PF00083 Sugar (and other) transporter XSP_000092 PF17863 AAA lid domain XSP_000092 PF07726 ATPase family associated with various cellular activities (AAA) XSP_000097 PF06441 Epoxide hydrolase N terminus XSP_000103 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XSP_000104 PF00155 Aminotransferase class I and II XSP_000105 PF07715 TonB-dependent Receptor Plug Domain XSP_000105 PF00593 TonB dependent receptor XSP_000107 PF07883 Cupin domain XSP_000110 PF01590 GAF domain XSP_000110 PF00158 Sigma-54 interaction domain XSP_000110 PF02954 Bacterial regulatory protein, Fis family XSP_000111 PF00171 Aldehyde dehydrogenase family XSP_000112 PF00107 Zinc-binding dehydrogenase XSP_000112 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000115 PF02735 Ku70/Ku80 beta-barrel domain XSP_000116 PF04679 ATP dependent DNA ligase C terminal region XSP_000116 PF01068 ATP dependent DNA ligase domain XSP_000116 PF13298 DNA polymerase Ligase (LigD) XSP_000117 PF01070 FMN-dependent dehydrogenase XSP_000118 PF07730 Histidine kinase XSP_000119 PF00072 Response regulator receiver domain XSP_000119 PF00196 Bacterial regulatory proteins, luxR family XSP_000122 PF00486 Transcriptional regulatory protein, C terminal XSP_000123 PF12241 Trans-2-enoyl-CoA reductase catalytic region XSP_000123 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XSP_000123 PF07055 Enoyl reductase FAD binding domain XSP_000124 PF00294 pfkB family carbohydrate kinase XSP_000127 PF01095 Pectinesterase XSP_000132 PF10137 Predicted nucleotide-binding protein containing TIR-like domain XSP_000135 PF04542 Sigma-70 region 2 XSP_000135 PF08281 Sigma-70, region 4 XSP_000141 PF00795 Carbon-nitrogen hydrolase XSP_000141 PF02540 NAD synthase XSP_000151 PF11896 Domain of unknown function (DUF3416) XSP_000151 PF00128 Alpha amylase, catalytic domain XSP_000152 PF00128 Alpha amylase, catalytic domain XSP_000152 PF16657 Maltogenic Amylase, C-terminal domain XSP_000153 PF02806 Alpha amylase, C-terminal all-beta domain XSP_000153 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000153 PF00128 Alpha amylase, catalytic domain XSP_000159 PF00248 Aldo/keto reductase family XSP_000160 PF13472 GDSL-like Lipase/Acylhydrolase family XSP_000161 PF00135 Carboxylesterase family XSP_000162 PF13472 GDSL-like Lipase/Acylhydrolase family XSP_000162 PF07859 alpha/beta hydrolase fold XSP_000164 PF03480 Bacterial extracellular solute-binding protein, family 7 XSP_000166 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XSP_000167 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XSP_000167 PF04616 Glycosyl hydrolases family 43 XSP_000168 PF00356 Bacterial regulatory proteins, lacI family XSP_000169 PF04962 KduI/IolB family XSP_000172 PF00657 GDSL-like Lipase/Acylhydrolase XSP_000173 PF13614 AAA domain XSP_000176 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XSP_000177 PF01037 Lrp/AsnC ligand binding domain XSP_000178 PF00593 TonB dependent receptor XSP_000178 PF07660 Secretin and TonB N terminus short domain XSP_000178 PF07715 TonB-dependent Receptor Plug Domain XSP_000179 PF01734 Patatin-like phospholipase XSP_000181 PF00005 ABC transporter XSP_000184 PF00571 CBS domain XSP_000184 PF00005 ABC transporter XSP_000185 PF00528 Binding-protein-dependent transport system inner membrane component XSP_000187 PF03781 Sulfatase-modifying factor enzyme 1 XSP_000187 PF12867 DinB superfamily XSP_000188 PF10017 Histidine-specific methyltransferase, SAM-dependent XSP_000194 PF01883 Iron-sulfur cluster assembly protein XSP_000194 PF10609 NUBPL iron-transfer P-loop NTPase XSP_000197 PF13091 PLD-like domain XSP_000198 PF03061 Thioesterase superfamily XSP_000202 PF01161 Phosphatidylethanolamine-binding protein XSP_000204 PF02673 Bacitracin resistance protein BacA XSP_000205 PF03951 Glutamine synthetase, beta-Grasp domain XSP_000205 PF00120 Glutamine synthetase, catalytic domain XSP_000206 PF00543 Nitrogen regulatory protein P-II XSP_000207 PF00909 Ammonium Transporter Family XSP_000208 PF00989 PAS fold XSP_000208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000208 PF00512 His Kinase A (phospho-acceptor) domain XSP_000209 PF00072 Response regulator receiver domain XSP_000209 PF02954 Bacterial regulatory protein, Fis family XSP_000209 PF00158 Sigma-54 interaction domain XSP_000210 PF00080 Copper/zinc superoxide dismutase (SODC) XSP_000211 PF00080 Copper/zinc superoxide dismutase (SODC) XSP_000212 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_000214 PF00108 Thiolase, N-terminal domain XSP_000214 PF02803 Thiolase, C-terminal domain XSP_000222 PF00581 Rhodanese-like domain XSP_000223 PF02556 Preprotein translocase subunit SecB XSP_000224 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XSP_000224 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XSP_000226 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XSP_000226 PF00205 Thiamine pyrophosphate enzyme, central domain XSP_000226 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XSP_000227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000228 PF00158 Sigma-54 interaction domain XSP_000228 PF00072 Response regulator receiver domain XSP_000228 PF02954 Bacterial regulatory protein, Fis family XSP_000231 PF07690 Major Facilitator Superfamily XSP_000232 PF00588 SpoU rRNA Methylase family XSP_000235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_000235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_000236 PF13784 Fic/DOC family N-terminal XSP_000236 PF02661 Fic/DOC family XSP_000237 PF00561 alpha/beta hydrolase fold XSP_000238 PF03692 Putative zinc- or iron-chelating domain XSP_000239 PF00501 AMP-binding enzyme XSP_000240 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XSP_000243 PF07478 D-ala D-ala ligase C-terminus XSP_000243 PF01820 D-ala D-ala ligase N-terminus XSP_000245 PF03109 ABC1 family XSP_000246 PF01596 O-methyltransferase XSP_000247 PF00849 RNA pseudouridylate synthase XSP_000249 PF00472 RF-1 domain XSP_000251 PF01112 Asparaginase XSP_000252 PF01432 Peptidase family M3 XSP_000253 PF10502 Signal peptidase, peptidase S26 XSP_000254 PF12706 Beta-lactamase superfamily domain XSP_000256 PF00999 Sodium/hydrogen exchanger family XSP_000257 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000257 PF03466 LysR substrate binding domain XSP_000258 PF01274 Malate synthase XSP_000259 PF00463 Isocitrate lyase family XSP_000260 PF00990 Diguanylate cyclase, GGDEF domain XSP_000264 PF00326 Prolyl oligopeptidase family XSP_000265 PF00289 Biotin carboxylase, N-terminal domain XSP_000265 PF00364 Biotin-requiring enzyme XSP_000265 PF18140 Propionyl-coenzyme A carboxylase BT domain XSP_000265 PF02785 Biotin carboxylase C-terminal domain XSP_000265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XSP_000266 PF01039 Carboxyl transferase domain XSP_000267 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_000267 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_000267 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_000278 PF07683 Cobalamin synthesis protein cobW C-terminal domain XSP_000278 PF02492 CobW/HypB/UreG, nucleotide-binding domain XSP_000282 PF03969 AFG1-like ATPase XSP_000284 PF01047 MarR family XSP_000285 PF02566 OsmC-like protein XSP_000286 PF12697 Alpha/beta hydrolase family XSP_000290 PF00248 Aldo/keto reductase family XSP_000291 PF00107 Zinc-binding dehydrogenase XSP_000291 PF16884 N-terminal domain of oxidoreductase XSP_000292 PF00248 Aldo/keto reductase family XSP_000294 PF00849 RNA pseudouridylate synthase XSP_000296 PF00270 DEAD/DEAH box helicase XSP_000296 PF04408 Helicase associated domain (HA2) XSP_000296 PF08482 ATP-dependent helicase C-terminal XSP_000296 PF00271 Helicase conserved C-terminal domain XSP_000297 PF00672 HAMP domain XSP_000297 PF02203 Tar ligand binding domain homologue XSP_000297 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000299 PF07308 Protein of unknown function (DUF1456) XSP_000300 PF00576 HIUase/Transthyretin family XSP_000301 PF13454 FAD-NAD(P)-binding XSP_000302 PF09349 OHCU decarboxylase XSP_000302 PF01014 Uricase XSP_000305 PF00266 Aminotransferase class-V XSP_000306 PF01546 Peptidase family M20/M25/M40 XSP_000306 PF07687 Peptidase dimerisation domain XSP_000308 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000308 PF03466 LysR substrate binding domain XSP_000309 PF07690 Major Facilitator Superfamily XSP_000312 PF01425 Amidase XSP_000313 PF01156 Inosine-uridine preferring nucleoside hydrolase XSP_000315 PF00175 Oxidoreductase NAD-binding domain XSP_000315 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_000316 PF00355 Rieske [2Fe-2S] domain XSP_000317 PF03466 LysR substrate binding domain XSP_000317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000318 PF01026 TatD related DNase XSP_000320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000320 PF03466 LysR substrate binding domain XSP_000321 PF07690 Major Facilitator Superfamily XSP_000325 PF02146 Sir2 family XSP_000326 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_000327 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_000327 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XSP_000329 PF00551 Formyl transferase XSP_000330 PF07690 Major Facilitator Superfamily XSP_000332 PF02219 Methylenetetrahydrofolate reductase XSP_000333 PF02677 Epoxyqueuosine reductase QueH XSP_000334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000334 PF03466 LysR substrate binding domain XSP_000335 PF03358 NADPH-dependent FMN reductase XSP_000337 PF08267 Cobalamin-independent synthase, N-terminal domain XSP_000337 PF01717 Cobalamin-independent synthase, Catalytic domain XSP_000339 PF05368 NmrA-like family XSP_000340 PF01638 HxlR-like helix-turn-helix XSP_000342 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000342 PF00672 HAMP domain XSP_000342 PF02203 Tar ligand binding domain homologue XSP_000354 PF00920 Dehydratase family XSP_000357 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_000358 PF07690 Major Facilitator Superfamily XSP_000359 PF11871 Domain of unknown function (DUF3391) XSP_000359 PF01966 HD domain XSP_000363 PF00171 Aldehyde dehydrogenase family XSP_000365 PF01494 FAD binding domain XSP_000367 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XSP_000367 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XSP_000368 PF00230 Major intrinsic protein XSP_000369 PF01266 FAD dependent oxidoreductase XSP_000369 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XSP_000370 PF00455 DeoR C terminal sensor domain XSP_000370 PF08220 DeoR-like helix-turn-helix domain XSP_000371 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_000371 PF00970 Oxidoreductase FAD-binding domain XSP_000373 PF00355 Rieske [2Fe-2S] domain XSP_000374 PF01144 Coenzyme A transferase XSP_000375 PF01144 Coenzyme A transferase XSP_000376 PF02803 Thiolase, C-terminal domain XSP_000376 PF00108 Thiolase, N-terminal domain XSP_000377 PF00775 Dioxygenase XSP_000377 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XSP_000379 PF10397 Adenylosuccinate lyase C-terminus XSP_000379 PF00206 Lyase XSP_000380 PF12146 Serine aminopeptidase, S33 XSP_000381 PF02627 Carboxymuconolactone decarboxylase family XSP_000383 PF01614 Bacterial transcriptional regulator XSP_000383 PF09339 IclR helix-turn-helix domain XSP_000385 PF07859 alpha/beta hydrolase fold XSP_000386 PF10677 Protein of unknown function (DUF2490) XSP_000387 PF01134 Glucose inhibited division protein A XSP_000387 PF13932 GidA associated domain XSP_000389 PF00291 Pyridoxal-phosphate dependent enzyme XSP_000394 PF13649 Methyltransferase domain XSP_000396 PF12697 Alpha/beta hydrolase family XSP_000397 PF00155 Aminotransferase class I and II XSP_000398 PF04055 Radical SAM superfamily XSP_000398 PF06968 Biotin and Thiamin Synthesis associated domain XSP_000400 PF01040 UbiA prenyltransferase family XSP_000407 PF00924 Mechanosensitive ion channel XSP_000407 PF12795 Mechanosensitive ion channel porin domain XSP_000407 PF12794 Mechanosensitive ion channel inner membrane domain 1 XSP_000408 PF00884 Sulfatase XSP_000409 PF03109 ABC1 family XSP_000410 PF05661 Protein of unknown function (DUF808) XSP_000411 PF00990 Diguanylate cyclase, GGDEF domain XSP_000412 PF00534 Glycosyl transferases group 1 XSP_000412 PF08323 Starch synthase catalytic domain XSP_000413 PF00128 Alpha amylase, catalytic domain XSP_000413 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000413 PF02806 Alpha amylase, C-terminal all-beta domain XSP_000414 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000414 PF00128 Alpha amylase, catalytic domain XSP_000414 PF11941 Domain of unknown function (DUF3459) XSP_000415 PF02446 4-alpha-glucanotransferase XSP_000416 PF00128 Alpha amylase, catalytic domain XSP_000418 PF00128 Alpha amylase, catalytic domain XSP_000418 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000419 PF13460 NAD(P)H-binding XSP_000423 PF06903 VirK protein XSP_000424 PF02321 Outer membrane efflux protein XSP_000427 PF00873 AcrB/AcrD/AcrF family XSP_000429 PF00106 short chain dehydrogenase XSP_000430 PF01638 HxlR-like helix-turn-helix XSP_000432 PF00271 Helicase conserved C-terminal domain XSP_000432 PF00270 DEAD/DEAH box helicase XSP_000433 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XSP_000433 PF00364 Biotin-requiring enzyme XSP_000433 PF02817 e3 binding domain XSP_000435 PF02780 Transketolase, C-terminal domain XSP_000435 PF02779 Transketolase, pyrimidine binding domain XSP_000436 PF00676 Dehydrogenase E1 component XSP_000438 PF03301 Tryptophan 2,3-dioxygenase XSP_000439 PF00854 POT family XSP_000441 PF01047 MarR family XSP_000442 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_000443 PF04209 homogentisate 1,2-dioxygenase XSP_000445 PF03334 Na+/H+ antiporter subunit XSP_000446 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XSP_000448 PF00361 Proton-conducting membrane transporter XSP_000449 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XSP_000450 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XSP_000450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XSP_000450 PF13244 Domain of unknown function (DUF4040) XSP_000450 PF00361 Proton-conducting membrane transporter XSP_000453 PF01483 Proprotein convertase P-domain XSP_000453 PF07504 Fungalysin/Thermolysin Propeptide Motif XSP_000453 PF01447 Thermolysin metallopeptidase, catalytic domain XSP_000453 PF02868 Thermolysin metallopeptidase, alpha-helical domain XSP_000456 PF01259 SAICAR synthetase XSP_000457 PF00226 DnaJ domain XSP_000457 PF05099 Tellurite resistance protein TerB XSP_000459 PF00834 Ribulose-phosphate 3 epimerase family XSP_000461 PF00781 Diacylglycerol kinase catalytic domain XSP_000462 PF04715 Anthranilate synthase component I, N terminal region XSP_000462 PF00425 chorismate binding enzyme XSP_000465 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_000465 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_000465 PF14310 Fibronectin type III-like domain XSP_000467 PF00672 HAMP domain XSP_000467 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000467 PF02203 Tar ligand binding domain homologue XSP_000469 PF00107 Zinc-binding dehydrogenase XSP_000469 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000470 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000474 PF02203 Tar ligand binding domain homologue XSP_000474 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000474 PF00672 HAMP domain XSP_000476 PF12833 Helix-turn-helix domain XSP_000476 PF02311 AraC-like ligand binding domain XSP_000479 PF01047 MarR family XSP_000482 PF00117 Glutamine amidotransferase class-I XSP_000484 PF00591 Glycosyl transferase family, a/b domain XSP_000484 PF02885 Glycosyl transferase family, helical bundle domain XSP_000485 PF00218 Indole-3-glycerol phosphate synthase XSP_000487 PF00325 Bacterial regulatory proteins, crp family XSP_000487 PF00027 Cyclic nucleotide-binding domain XSP_000488 PF02675 S-adenosylmethionine decarboxylase XSP_000489 PF00893 Small Multidrug Resistance protein XSP_000490 PF03232 Ubiquinone biosynthesis protein COQ7 XSP_000491 PF00572 Ribosomal protein L13 XSP_000492 PF00380 Ribosomal protein S9/S16 XSP_000495 PF00293 NUDIX domain XSP_000497 PF00210 Ferritin-like domain XSP_000498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000498 PF00512 His Kinase A (phospho-acceptor) domain XSP_000498 PF01627 Hpt domain XSP_000498 PF00072 Response regulator receiver domain XSP_000498 PF00672 HAMP domain XSP_000498 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_000499 PF00486 Transcriptional regulatory protein, C terminal XSP_000499 PF00072 Response regulator receiver domain XSP_000503 PF01521 Iron-sulphur cluster biosynthesis XSP_000505 PF00293 NUDIX domain XSP_000505 PF09297 NADH pyrophosphatase zinc ribbon domain XSP_000505 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XSP_000506 PF03186 CobD/Cbib protein XSP_000506 PF17113 Regulatory signalling modulator protein AmpE XSP_000510 PF03466 LysR substrate binding domain XSP_000510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000511 PF07690 Major Facilitator Superfamily XSP_000512 PF12805 FUSC-like inner membrane protein yccS XSP_000513 PF02844 Phosphoribosylglycinamide synthetase, N domain XSP_000513 PF02843 Phosphoribosylglycinamide synthetase, C domain XSP_000513 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XSP_000514 PF02142 MGS-like domain XSP_000514 PF01808 AICARFT/IMPCHase bienzyme XSP_000516 PF00818 Ice nucleation protein repeat XSP_000516 PF00818 Ice nucleation protein repeat XSP_000517 PF02954 Bacterial regulatory protein, Fis family XSP_000524 PF02785 Biotin carboxylase C-terminal domain XSP_000524 PF00289 Biotin carboxylase, N-terminal domain XSP_000524 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XSP_000526 PF00364 Biotin-requiring enzyme XSP_000527 PF01220 Dehydroquinase class II XSP_000528 PF11412 Disulphide bond corrector protein DsbC XSP_000528 PF02683 Cytochrome C biogenesis protein transmembrane region XSP_000529 PF03091 CutA1 divalent ion tolerance protein XSP_000530 PF04231 Endonuclease I XSP_000531 PF00166 Chaperonin 10 Kd subunit XSP_000532 PF00118 TCP-1/cpn60 chaperonin family XSP_000533 PF00593 TonB dependent receptor XSP_000533 PF07715 TonB-dependent Receptor Plug Domain XSP_000535 PF00793 DAHP synthetase I family XSP_000536 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain XSP_000536 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain XSP_000540 PF04773 FecR protein XSP_000540 PF16220 Domain of unknown function (DUF4880) XSP_000541 PF00593 TonB dependent receptor XSP_000541 PF07715 TonB-dependent Receptor Plug Domain XSP_000541 PF07660 Secretin and TonB N terminus short domain XSP_000546 PF08335 GlnD PII-uridylyltransferase XSP_000546 PF03710 Glutamate-ammonia ligase adenylyltransferase XSP_000550 PF00881 Nitroreductase family XSP_000551 PF04264 YceI-like domain XSP_000552 PF04954 Siderophore-interacting protein XSP_000552 PF08021 Siderophore-interacting FAD-binding domain XSP_000554 PF16957 Malonate decarboxylase, alpha subunit, transporter XSP_000555 PF06857 Malonate decarboxylase delta subunit (MdcD) XSP_000556 PF01039 Carboxyl transferase domain XSP_000558 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XSP_000559 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XSP_000560 PF08659 KR domain XSP_000560 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_000560 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_000560 PF00550 Phosphopantetheine attachment site XSP_000560 PF00698 Acyl transferase domain XSP_000560 PF16197 Ketoacyl-synthetase C-terminal extension XSP_000562 PF07729 FCD domain XSP_000562 PF00392 Bacterial regulatory proteins, gntR family XSP_000563 PF13419 Haloacid dehalogenase-like hydrolase XSP_000569 PF07745 Glycosyl hydrolase family 53 XSP_000570 PF00456 Transketolase, thiamine diphosphate binding domain XSP_000570 PF17831 Pyruvate dehydrogenase E1 component middle domain XSP_000571 PF00183 Hsp90 protein XSP_000575 PF13361 UvrD-like helicase C-terminal domain XSP_000575 PF00580 UvrD/REP helicase N-terminal domain XSP_000592 PF04542 Sigma-70 region 2 XSP_000592 PF08281 Sigma-70, region 4 XSP_000594 PF00593 TonB dependent receptor XSP_000594 PF07715 TonB-dependent Receptor Plug Domain XSP_000595 PF00326 Prolyl oligopeptidase family XSP_000602 PF07859 alpha/beta hydrolase fold XSP_000607 PF13409 Glutathione S-transferase, N-terminal domain XSP_000615 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_000615 PF00326 Prolyl oligopeptidase family XSP_000616 PF07759 Protein of unknown function (DUF1615) XSP_000617 PF00990 Diguanylate cyclase, GGDEF domain XSP_000621 PF00892 EamA-like transporter family XSP_000622 PF00497 Bacterial extracellular solute-binding proteins, family 3 XSP_000624 PF00324 Amino acid permease XSP_000625 PF01544 CorA-like Mg2+ transporter protein XSP_000627 PF04616 Glycosyl hydrolases family 43 XSP_000628 PF01204 Trehalase XSP_000630 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XSP_000630 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XSP_000634 PF00563 EAL domain XSP_000634 PF00990 Diguanylate cyclase, GGDEF domain XSP_000634 PF03707 Bacterial signalling protein N terminal repeat XSP_000636 PF02203 Tar ligand binding domain homologue XSP_000636 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000636 PF00672 HAMP domain XSP_000637 PF00553 Cellulose binding domain XSP_000637 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000638 PF01740 STAS domain XSP_000638 PF00916 Sulfate permease family XSP_000639 PF00990 Diguanylate cyclase, GGDEF domain XSP_000641 PF13632 Glycosyl transferase family group 2 XSP_000643 PF07694 5TMR of 5TMR-LYT XSP_000643 PF06580 Histidine kinase XSP_000644 PF04397 LytTr DNA-binding domain XSP_000644 PF00072 Response regulator receiver domain XSP_000645 PF03900 Porphobilinogen deaminase, C-terminal domain XSP_000645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XSP_000650 PF00326 Prolyl oligopeptidase family XSP_000650 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XSP_000651 PF00155 Aminotransferase class I and II XSP_000652 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XSP_000652 PF00326 Prolyl oligopeptidase family XSP_000653 PF04304 Protein of unknown function (DUF454) XSP_000655 PF01678 Diaminopimelate epimerase XSP_000657 PF02899 Phage integrase, N-terminal SAM-like domain XSP_000657 PF00589 Phage integrase family XSP_000659 PF00227 Proteasome subunit XSP_000660 PF00004 ATPase family associated with various cellular activities (AAA) XSP_000660 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_000660 PF07724 AAA domain (Cdc48 subfamily) XSP_000662 PF13673 Acetyltransferase (GNAT) domain XSP_000663 PF13533 Biotin-lipoyl like XSP_000665 PF01209 ubiE/COQ5 methyltransferase family XSP_000666 PF00990 Diguanylate cyclase, GGDEF domain XSP_000666 PF03707 Bacterial signalling protein N terminal repeat XSP_000666 PF00563 EAL domain XSP_000667 PF11838 ERAP1-like C-terminal domain XSP_000667 PF01433 Peptidase family M1 domain XSP_000670 PF13360 PQQ-like domain XSP_000671 PF00497 Bacterial extracellular solute-binding proteins, family 3 XSP_000674 PF00107 Zinc-binding dehydrogenase XSP_000674 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000676 PF01590 GAF domain XSP_000676 PF00158 Sigma-54 interaction domain XSP_000676 PF02954 Bacterial regulatory protein, Fis family XSP_000677 PF00294 pfkB family carbohydrate kinase XSP_000679 PF04085 rod shape-determining protein MreC XSP_000681 PF03717 Penicillin-binding Protein dimerisation domain XSP_000681 PF00905 Penicillin binding protein transpeptidase domain XSP_000682 PF01098 Cell cycle protein XSP_000683 PF00295 Glycosyl hydrolases family 28 XSP_000684 PF13406 Transglycosylase SLT domain XSP_000685 PF03330 Lytic transglycolase XSP_000685 PF05036 Sporulation related domain XSP_000686 PF00768 D-alanyl-D-alanine carboxypeptidase XSP_000686 PF07943 Penicillin-binding protein 5, C-terminal domain XSP_000689 PF04359 Protein of unknown function (DUF493) XSP_000690 PF03099 Biotin/lipoate A/B protein ligase family XSP_000691 PF04055 Radical SAM superfamily XSP_000691 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XSP_000692 PF17804 Tail specific protease N-terminal domain XSP_000692 PF03572 Peptidase family S41 XSP_000692 PF00595 PDZ domain XSP_000692 PF11818 C-terminal domain of tail specific protease (DUF3340) XSP_000694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000694 PF03466 LysR substrate binding domain XSP_000696 PF01467 Cytidylyltransferase-like XSP_000696 PF00293 NUDIX domain XSP_000703 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_000703 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XSP_000704 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_000704 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XSP_000705 PF04972 BON domain XSP_000706 PF08446 PAS fold XSP_000706 PF00512 His Kinase A (phospho-acceptor) domain XSP_000706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000706 PF01590 GAF domain XSP_000706 PF00360 Phytochrome region XSP_000707 PF00072 Response regulator receiver domain XSP_000708 PF00512 His Kinase A (phospho-acceptor) domain XSP_000708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000709 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XSP_000717 PF03958 Bacterial type II/III secretion system short domain XSP_000717 PF00263 Bacterial type II and III secretion system protein XSP_000718 PF00437 Type II/IV secretion system protein XSP_000719 PF00482 Type II secretion system (T2SS), protein F XSP_000720 PF07963 Prokaryotic N-terminal methylation motif XSP_000720 PF08334 Type II secretion system (T2SS), protein G XSP_000721 PF07963 Prokaryotic N-terminal methylation motif XSP_000721 PF12019 Type II transport protein GspH XSP_000722 PF02501 Type II secretion system (T2SS), protein I XSP_000722 PF07963 Prokaryotic N-terminal methylation motif XSP_000723 PF11612 Type II secretion system (T2SS), protein J XSP_000723 PF07963 Prokaryotic N-terminal methylation motif XSP_000724 PF03934 Type II secretion system (T2SS), protein K XSP_000729 PF00703 Glycosyl hydrolases family 2 XSP_000729 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XSP_000729 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XSP_000729 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_000729 PF16355 Domain of unknown function (DUF4982) XSP_000732 PF07702 UTRA domain XSP_000732 PF00392 Bacterial regulatory proteins, gntR family XSP_000733 PF07690 Major Facilitator Superfamily XSP_000734 PF00356 Bacterial regulatory proteins, lacI family XSP_000735 PF01380 SIS domain XSP_000736 PF01979 Amidohydrolase family XSP_000739 PF12627 Probable RNA and SrmB- binding site of polymerase A XSP_000739 PF01966 HD domain XSP_000739 PF01743 Poly A polymerase head domain XSP_000740 PF01464 Transglycosylase SLT domain XSP_000740 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XSP_000741 PF07715 TonB-dependent Receptor Plug Domain XSP_000741 PF00593 TonB dependent receptor XSP_000743 PF00732 GMC oxidoreductase XSP_000743 PF05199 GMC oxidoreductase XSP_000744 PF00171 Aldehyde dehydrogenase family XSP_000745 PF02028 BCCT, betaine/carnitine/choline family transporter XSP_000747 PF01323 DSBA-like thioredoxin domain XSP_000749 PF00034 Cytochrome c XSP_000750 PF01926 50S ribosome-binding GTPase XSP_000751 PF10996 Beta-Casp domain XSP_000751 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain XSP_000751 PF00753 Metallo-beta-lactamase superfamily XSP_000752 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term XSP_000752 PF12833 Helix-turn-helix domain XSP_000753 PF04107 Glutamate-cysteine ligase family 2(GCS2) XSP_000754 PF00512 His Kinase A (phospho-acceptor) domain XSP_000754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000754 PF00672 HAMP domain XSP_000755 PF00486 Transcriptional regulatory protein, C terminal XSP_000755 PF00072 Response regulator receiver domain XSP_000758 PF13426 PAS domain XSP_000758 PF07536 HWE histidine kinase XSP_000758 PF13581 Histidine kinase-like ATPase domain XSP_000759 PF02583 Metal-sensitive transcriptional repressor XSP_000760 PF00107 Zinc-binding dehydrogenase XSP_000760 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000761 PF04828 Glutathione-dependent formaldehyde-activating enzyme XSP_000762 PF00756 Putative esterase XSP_000763 PF00155 Aminotransferase class I and II XSP_000763 PF00392 Bacterial regulatory proteins, gntR family XSP_000764 PF00892 EamA-like transporter family XSP_000768 PF03814 Potassium-transporting ATPase A subunit XSP_000770 PF02669 K+-transporting ATPase, c chain XSP_000771 PF00512 His Kinase A (phospho-acceptor) domain XSP_000771 PF02702 Osmosensitive K+ channel His kinase sensor domain XSP_000771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000771 PF13492 GAF domain XSP_000771 PF13493 Domain of unknown function (DUF4118) XSP_000772 PF00486 Transcriptional regulatory protein, C terminal XSP_000772 PF00072 Response regulator receiver domain XSP_000773 PF02913 FAD linked oxidases, C-terminal domain XSP_000773 PF01565 FAD binding domain XSP_000774 PF04307 LexA-binding, inner membrane-associated putative hydrolase XSP_000775 PF02021 Uncharacterised protein family UPF0102 XSP_000777 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_000780 PF02381 MraZ protein, putative antitoxin-like XSP_000781 PF01795 MraW methylase family XSP_000782 PF04999 Cell division protein FtsL XSP_000783 PF00905 Penicillin binding protein transpeptidase domain XSP_000783 PF03717 Penicillin-binding Protein dimerisation domain XSP_000784 PF02875 Mur ligase family, glutamate ligase domain XSP_000784 PF08245 Mur ligase middle domain XSP_000784 PF01225 Mur ligase family, catalytic domain XSP_000785 PF08245 Mur ligase middle domain XSP_000785 PF01225 Mur ligase family, catalytic domain XSP_000785 PF02875 Mur ligase family, glutamate ligase domain XSP_000786 PF00953 Glycosyl transferase family 4 XSP_000787 PF01098 Cell cycle protein XSP_000788 PF03033 Glycosyltransferase family 28 N-terminal domain XSP_000788 PF04101 Glycosyltransferase family 28 C-terminal domain XSP_000789 PF01225 Mur ligase family, catalytic domain XSP_000789 PF08245 Mur ligase middle domain XSP_000789 PF02875 Mur ligase family, glutamate ligase domain XSP_000790 PF07478 D-ala D-ala ligase C-terminus XSP_000790 PF01820 D-ala D-ala ligase N-terminus XSP_000791 PF03799 Cell division protein FtsQ XSP_000791 PF08478 POTRA domain, FtsQ-type XSP_000792 PF02491 SHS2 domain inserted in FTSA XSP_000793 PF12327 FtsZ family, C-terminal domain XSP_000793 PF00091 Tubulin/FtsZ family, GTPase domain XSP_000794 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XSP_000796 PF01476 LysM domain XSP_000796 PF08525 Opacity-associated protein A N-terminal motif XSP_000796 PF01551 Peptidase family M23 XSP_000797 PF07516 SecA Wing and Scaffold domain XSP_000797 PF01043 SecA preprotein cross-linking domain XSP_000797 PF07517 SecA DEAD-like domain XSP_000797 PF02810 SEC-C motif XSP_000799 PF00293 NUDIX domain XSP_000802 PF02219 Methylenetetrahydrofolate reductase XSP_000804 PF08659 KR domain XSP_000804 PF00550 Phosphopantetheine attachment site XSP_000804 PF14765 Polyketide synthase dehydratase XSP_000804 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_000804 PF16197 Ketoacyl-synthetase C-terminal extension XSP_000804 PF00698 Acyl transferase domain XSP_000804 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000804 PF00107 Zinc-binding dehydrogenase XSP_000804 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_000805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_000809 PF00128 Alpha amylase, catalytic domain XSP_000812 PF05221 S-adenosyl-L-homocysteine hydrolase XSP_000812 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XSP_000814 PF00311 Phosphoenolpyruvate carboxylase XSP_000818 PF00328 Histidine phosphatase superfamily (branch 2) XSP_000819 PF02772 S-adenosylmethionine synthetase, central domain XSP_000819 PF02773 S-adenosylmethionine synthetase, C-terminal domain XSP_000819 PF00438 S-adenosylmethionine synthetase, N-terminal domain XSP_000823 PF01207 Dihydrouridine synthase (Dus) XSP_000824 PF00294 pfkB family carbohydrate kinase XSP_000824 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XSP_000825 PF07670 Nucleoside recognition XSP_000825 PF07662 Na+ dependent nucleoside transporter C-terminus XSP_000825 PF01773 Na+ dependent nucleoside transporter N-terminus XSP_000826 PF00248 Aldo/keto reductase family XSP_000828 PF07715 TonB-dependent Receptor Plug Domain XSP_000828 PF00593 TonB dependent receptor XSP_000832 PF00528 Binding-protein-dependent transport system inner membrane component XSP_000833 PF00005 ABC transporter XSP_000835 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XSP_000837 PF00005 ABC transporter XSP_000838 PF13472 GDSL-like Lipase/Acylhydrolase family XSP_000839 PF00072 Response regulator receiver domain XSP_000839 PF00486 Transcriptional regulatory protein, C terminal XSP_000840 PF08521 Two-component sensor kinase N-terminal XSP_000840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000840 PF00512 His Kinase A (phospho-acceptor) domain XSP_000842 PF01219 Prokaryotic diacylglycerol kinase XSP_000846 PF01790 Prolipoprotein diacylglyceryl transferase XSP_000847 PF00303 Thymidylate synthase XSP_000848 PF00186 Dihydrofolate reductase XSP_000849 PF00149 Calcineurin-like phosphoesterase XSP_000850 PF04379 ApaG domain XSP_000851 PF00398 Ribosomal RNA adenine dimethylase XSP_000852 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XSP_000853 PF00639 PPIC-type PPIASE domain XSP_000853 PF09312 SurA N-terminal domain XSP_000854 PF03968 OstA-like protein XSP_000854 PF04453 LPS transport system D XSP_000855 PF00850 Histone deacetylase domain XSP_000856 PF01923 Cobalamin adenosyltransferase XSP_000858 PF01494 FAD binding domain XSP_000859 PF01494 FAD binding domain XSP_000863 PF00392 Bacterial regulatory proteins, gntR family XSP_000863 PF07729 FCD domain XSP_000864 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_000865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_000865 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XSP_000866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000866 PF03466 LysR substrate binding domain XSP_000867 PF13193 AMP-binding enzyme C-terminal domain XSP_000867 PF00501 AMP-binding enzyme XSP_000868 PF00171 Aldehyde dehydrogenase family XSP_000869 PF00378 Enoyl-CoA hydratase/isomerase XSP_000873 PF08450 SMP-30/Gluconolactonase/LRE-like region XSP_000874 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XSP_000874 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_000875 PF01728 FtsJ-like methyltransferase XSP_000875 PF18125 RlmM ferredoxin-like domain XSP_000879 PF00892 EamA-like transporter family XSP_000880 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XSP_000880 PF00749 tRNA synthetases class I (E and Q), catalytic domain XSP_000883 PF00072 Response regulator receiver domain XSP_000883 PF00990 Diguanylate cyclase, GGDEF domain XSP_000884 PF00072 Response regulator receiver domain XSP_000884 PF01627 Hpt domain XSP_000884 PF00512 His Kinase A (phospho-acceptor) domain XSP_000884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000884 PF00672 HAMP domain XSP_000884 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_000885 PF00196 Bacterial regulatory proteins, luxR family XSP_000885 PF00072 Response regulator receiver domain XSP_000887 PF01625 Peptide methionine sulfoxide reductase XSP_000889 PF00923 Transaldolase/Fructose-6-phosphate aldolase XSP_000890 PF14760 Rnk N-terminus XSP_000890 PF01272 Transcription elongation factor, GreA/GreB, C-term XSP_000891 PF03466 LysR substrate binding domain XSP_000891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000892 PF13192 Thioredoxin domain XSP_000892 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000893 PF10417 C-terminal domain of 1-Cys peroxiredoxin XSP_000893 PF00578 AhpC/TSA family XSP_000894 PF05175 Methyltransferase small domain XSP_000894 PF17827 PrmC N-terminal domain XSP_000895 PF00561 alpha/beta hydrolase fold XSP_000897 PF00293 NUDIX domain XSP_000898 PF01612 3'-5' exonuclease XSP_000898 PF00476 DNA polymerase family A XSP_000898 PF01367 5'-3' exonuclease, C-terminal SAM fold XSP_000898 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XSP_000904 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XSP_000904 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XSP_000904 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XSP_000908 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XSP_000909 PF02233 NAD(P) transhydrogenase beta subunit XSP_000913 PF01063 Amino-transferase class IV XSP_000914 PF00082 Subtilase family XSP_000914 PF04151 Bacterial pre-peptidase C-terminal domain XSP_000915 PF00082 Subtilase family XSP_000915 PF04151 Bacterial pre-peptidase C-terminal domain XSP_000916 PF04151 Bacterial pre-peptidase C-terminal domain XSP_000916 PF00082 Subtilase family XSP_000917 PF04073 Aminoacyl-tRNA editing domain XSP_000920 PF03358 NADPH-dependent FMN reductase XSP_000921 PF03631 Virulence factor BrkB XSP_000922 PF08534 Redoxin XSP_000923 PF00708 Acylphosphatase XSP_000925 PF03976 Polyphosphate kinase 2 (PPK2) XSP_000926 PF00994 Probable molybdopterin binding domain XSP_000928 PF00472 RF-1 domain XSP_000928 PF03462 PCRF domain XSP_000929 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XSP_000929 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XSP_000929 PF01488 Shikimate / quinate 5-dehydrogenase XSP_000931 PF03550 Outer membrane lipoprotein LolB XSP_000932 PF08544 GHMP kinases C terminal XSP_000932 PF00288 GHMP kinases N terminal domain XSP_000934 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XSP_000934 PF14572 Phosphoribosyl synthetase-associated domain XSP_000935 PF14693 Ribosomal protein TL5, C-terminal domain XSP_000935 PF01386 Ribosomal L25p family XSP_000936 PF01195 Peptidyl-tRNA hydrolase XSP_000937 PF06071 Protein of unknown function (DUF933) XSP_000937 PF01926 50S ribosome-binding GTPase XSP_000941 PF03144 Elongation factor Tu domain 2 XSP_000941 PF00009 Elongation factor Tu GTP binding domain XSP_000941 PF03143 Elongation factor Tu C-terminal domain XSP_000943 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XSP_000944 PF02357 Transcription termination factor nusG XSP_000944 PF00467 KOW motif XSP_000945 PF00298 Ribosomal protein L11, RNA binding domain XSP_000945 PF03946 Ribosomal protein L11, N-terminal domain XSP_000946 PF00687 Ribosomal protein L1p/L10e family XSP_000947 PF00466 Ribosomal protein L10 XSP_000948 PF16320 Ribosomal protein L7/L12 dimerisation domain XSP_000948 PF00542 Ribosomal protein L7/L12 C-terminal domain XSP_000949 PF04560 RNA polymerase Rpb2, domain 7 XSP_000949 PF10385 RNA polymerase beta subunit external 1 domain XSP_000949 PF00562 RNA polymerase Rpb2, domain 6 XSP_000949 PF04563 RNA polymerase beta subunit XSP_000949 PF04561 RNA polymerase Rpb2, domain 2 XSP_000949 PF04565 RNA polymerase Rpb2, domain 3 XSP_000950 PF04998 RNA polymerase Rpb1, domain 5 XSP_000950 PF04983 RNA polymerase Rpb1, domain 3 XSP_000950 PF00623 RNA polymerase Rpb1, domain 2 XSP_000950 PF04997 RNA polymerase Rpb1, domain 1 XSP_000950 PF05000 RNA polymerase Rpb1, domain 4 XSP_000951 PF00164 Ribosomal protein S12/S23 XSP_000952 PF00177 Ribosomal protein S7p/S5e XSP_000953 PF00009 Elongation factor Tu GTP binding domain XSP_000953 PF03144 Elongation factor Tu domain 2 XSP_000953 PF14492 Elongation Factor G, domain II XSP_000953 PF00679 Elongation factor G C-terminus XSP_000953 PF03764 Elongation factor G, domain IV XSP_000954 PF00009 Elongation factor Tu GTP binding domain XSP_000954 PF03143 Elongation factor Tu C-terminal domain XSP_000954 PF03144 Elongation factor Tu domain 2 XSP_000955 PF00338 Ribosomal protein S10p/S20e XSP_000956 PF00297 Ribosomal protein L3 XSP_000957 PF00573 Ribosomal protein L4/L1 family XSP_000958 PF00276 Ribosomal protein L23 XSP_000959 PF00181 Ribosomal Proteins L2, RNA binding domain XSP_000959 PF03947 Ribosomal Proteins L2, C-terminal domain XSP_000960 PF00203 Ribosomal protein S19 XSP_000961 PF00237 Ribosomal protein L22p/L17e XSP_000962 PF00189 Ribosomal protein S3, C-terminal domain XSP_000962 PF07650 KH domain XSP_000963 PF00252 Ribosomal protein L16p/L10e XSP_000964 PF00831 Ribosomal L29 protein XSP_000965 PF00366 Ribosomal protein S17 XSP_000966 PF00238 Ribosomal protein L14p/L23e XSP_000967 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XSP_000967 PF00467 KOW motif XSP_000968 PF00281 Ribosomal protein L5 XSP_000968 PF00673 ribosomal L5P family C-terminus XSP_000969 PF00253 Ribosomal protein S14p/S29e XSP_000970 PF00410 Ribosomal protein S8 XSP_000971 PF00347 Ribosomal protein L6 XSP_000972 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XSP_000973 PF03719 Ribosomal protein S5, C-terminal domain XSP_000973 PF00333 Ribosomal protein S5, N-terminal domain XSP_000974 PF00327 Ribosomal protein L30p/L7e XSP_000975 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XSP_000976 PF00344 SecY translocase XSP_000977 PF00416 Ribosomal protein S13/S18 XSP_000978 PF00411 Ribosomal protein S11 XSP_000979 PF00163 Ribosomal protein S4/S9 N-terminal domain XSP_000979 PF01479 S4 domain XSP_000980 PF01000 RNA polymerase Rpb3/RpoA insert domain XSP_000980 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XSP_000980 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XSP_000981 PF01196 Ribosomal protein L17 XSP_000982 PF02600 Disulfide bond formation protein DsbB XSP_000983 PF01474 Class-II DAHP synthetase family XSP_000985 PF01425 Amidase XSP_000987 PF00009 Elongation factor Tu GTP binding domain XSP_000987 PF03144 Elongation factor Tu domain 2 XSP_000987 PF00679 Elongation factor G C-terminus XSP_000988 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XSP_000989 PF00056 lactate/malate dehydrogenase, NAD binding domain XSP_000989 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XSP_000990 PF00043 Glutathione S-transferase, C-terminal domain XSP_000990 PF02798 Glutathione S-transferase, N-terminal domain XSP_000993 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000993 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_000994 PF00107 Zinc-binding dehydrogenase XSP_000994 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000995 PF00223 Photosystem I psaA/psaB protein XSP_000995 PF00691 OmpA family XSP_000997 PF00849 RNA pseudouridylate synthase XSP_000999 PF00155 Aminotransferase class I and II XSP_001001 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001002 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001003 PF12857 TOBE-like domain XSP_001003 PF00005 ABC transporter XSP_001003 PF17850 CysA C-terminal regulatory domain XSP_001005 PF08240 Alcohol dehydrogenase GroES-like domain XSP_001005 PF00107 Zinc-binding dehydrogenase XSP_001007 PF04185 Phosphoesterase family XSP_001007 PF05506 Domain of unknown function (DUF756) XSP_001009 PF00300 Histidine phosphatase superfamily (branch 1) XSP_001011 PF02875 Mur ligase family, glutamate ligase domain XSP_001011 PF08245 Mur ligase middle domain XSP_001014 PF00156 Phosphoribosyl transferase domain XSP_001015 PF04305 Protein of unknown function (DUF455) XSP_001018 PF00149 Calcineurin-like phosphoesterase XSP_001019 PF01569 PAP2 superfamily XSP_001020 PF13439 Glycosyltransferase Family 4 XSP_001020 PF00534 Glycosyl transferases group 1 XSP_001021 PF02541 Ppx/GppA phosphatase family XSP_001022 PF13090 Polyphosphate kinase C-terminal domain 2 XSP_001022 PF02503 Polyphosphate kinase middle domain XSP_001022 PF13089 Polyphosphate kinase N-terminal domain XSP_001022 PF17941 Polyphosphate kinase C-terminal domain 1 XSP_001023 PF11808 Phosphate regulon sensor protein PhoR XSP_001023 PF00989 PAS fold XSP_001023 PF00512 His Kinase A (phospho-acceptor) domain XSP_001023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001024 PF00072 Response regulator receiver domain XSP_001024 PF00486 Transcriptional regulatory protein, C terminal XSP_001025 PF01435 Peptidase family M48 XSP_001025 PF13181 Tetratricopeptide repeat XSP_001026 PF00462 Glutaredoxin XSP_001028 PF18324 Hypothetical protein TT1725 XSP_001028 PF00180 Isocitrate/isopropylmalate dehydrogenase XSP_001061 PF00574 Clp protease XSP_001093 PF00512 His Kinase A (phospho-acceptor) domain XSP_001093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001095 PF05697 Bacterial trigger factor protein (TF) XSP_001095 PF05698 Bacterial trigger factor protein (TF) C-terminus XSP_001096 PF00574 Clp protease XSP_001097 PF07724 AAA domain (Cdc48 subfamily) XSP_001097 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_001097 PF06689 ClpX C4-type zinc finger XSP_001098 PF02190 ATP-dependent protease La (LON) substrate-binding domain XSP_001098 PF00004 ATPase family associated with various cellular activities (AAA) XSP_001098 PF05362 Lon protease (S16) C-terminal proteolytic domain XSP_001099 PF00216 Bacterial DNA-binding protein XSP_001104 PF01476 LysM domain XSP_001104 PF05257 CHAP domain XSP_001105 PF00753 Metallo-beta-lactamase superfamily XSP_001105 PF16123 Hydroxyacylglutathione hydrolase C-terminus XSP_001107 PF00075 RNase H XSP_001108 PF00929 Exonuclease XSP_001112 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XSP_001114 PF00753 Metallo-beta-lactamase superfamily XSP_001114 PF12706 Beta-lactamase superfamily domain XSP_001115 PF04055 Radical SAM superfamily XSP_001115 PF06463 Molybdenum Cofactor Synthesis C XSP_001116 PF01967 MoaC family XSP_001117 PF02597 ThiS family XSP_001118 PF02391 MoaE protein XSP_001121 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XSP_001121 PF12169 DNA polymerase III subunits gamma and tau domain III XSP_001121 PF12170 DNA polymerase III tau subunit V interacting with alpha XSP_001122 PF02575 YbaB/EbfC DNA-binding family XSP_001123 PF02132 RecR protein XSP_001123 PF13662 Toprim domain XSP_001124 PF01230 HIT domain XSP_001126 PF13559 Domain of unknown function (DUF4129) XSP_001126 PF11992 Domain of unknown function (DUF3488) XSP_001126 PF01841 Transglutaminase-like superfamily XSP_001128 PF17863 AAA lid domain XSP_001128 PF07726 ATPase family associated with various cellular activities (AAA) XSP_001132 PF02545 Maf-like protein XSP_001133 PF02620 Large ribosomal RNA subunit accumulation protein YceD XSP_001134 PF01783 Ribosomal L32p protein family XSP_001135 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_001135 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_001137 PF00698 Acyl transferase domain XSP_001139 PF00550 Phosphopantetheine attachment site XSP_001140 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_001140 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_001141 PF00425 chorismate binding enzyme XSP_001141 PF04715 Anthranilate synthase component I, N terminal region XSP_001142 PF02618 YceG-like family XSP_001143 PF09115 DNA polymerase III, delta subunit, C terminal XSP_001147 PF00158 Sigma-54 interaction domain XSP_001147 PF06506 Propionate catabolism activator XSP_001147 PF02954 Bacterial regulatory protein, Fis family XSP_001149 PF00285 Citrate synthase, C-terminal domain XSP_001151 PF00694 Aconitase C-terminal domain XSP_001151 PF00330 Aconitase family (aconitate hydratase) XSP_001152 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XSP_001154 PF04303 PrpF protein XSP_001155 PF00593 TonB dependent receptor XSP_001155 PF07715 TonB-dependent Receptor Plug Domain XSP_001157 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XSP_001157 PF17962 Bacterial macroglobulin domain 6 XSP_001157 PF01835 MG2 domain XSP_001157 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XSP_001157 PF07703 Alpha-2-macroglobulin bait region domain XSP_001157 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XSP_001157 PF00207 Alpha-2-macroglobulin family XSP_001157 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XSP_001163 PF06832 Penicillin-Binding Protein C-terminus Family XSP_001163 PF00912 Transglycosylase XSP_001163 PF00905 Penicillin binding protein transpeptidase domain XSP_001165 PF08534 Redoxin XSP_001167 PF01556 DnaJ C terminal domain XSP_001167 PF00226 DnaJ domain XSP_001168 PF00072 Response regulator receiver domain XSP_001169 PF01145 SPFH domain / Band 7 family XSP_001169 PF12221 Bacterial membrane protein N terminal XSP_001170 PF01145 SPFH domain / Band 7 family XSP_001173 PF00709 Adenylosuccinate synthetase XSP_001174 PF01433 Peptidase family M1 domain XSP_001179 PF00440 Bacterial regulatory proteins, tetR family XSP_001181 PF12008 Type I restriction and modification enzyme - subunit R C terminal XSP_001181 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XSP_001181 PF18766 SWI2/SNF2 ATPase XSP_001186 PF12161 HsdM N-terminal domain XSP_001186 PF02384 N-6 DNA Methylase XSP_001188 PF13977 BetI-type transcriptional repressor, C-terminal XSP_001188 PF00440 Bacterial regulatory proteins, tetR family XSP_001189 PF00300 Histidine phosphatase superfamily (branch 1) XSP_001189 PF13456 Reverse transcriptase-like XSP_001190 PF01256 Carbohydrate kinase XSP_001194 PF07971 Glycosyl hydrolase family 92 XSP_001194 PF17678 Glycosyl hydrolase family 92 N-terminal domain XSP_001196 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_001199 PF17755 UvrA DNA-binding domain XSP_001200 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_001200 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001200 PF14310 Fibronectin type III-like domain XSP_001201 PF04239 Protein of unknown function (DUF421) XSP_001204 PF07690 Major Facilitator Superfamily XSP_001205 PF05426 Alginate lyase XSP_001205 PF07940 Heparinase II/III-like protein XSP_001206 PF14592 Chondroitinase B XSP_001208 PF00392 Bacterial regulatory proteins, gntR family XSP_001208 PF07729 FCD domain XSP_001210 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XSP_001210 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XSP_001211 PF00941 FAD binding domain in molybdopterin dehydrogenase XSP_001211 PF03450 CO dehydrogenase flavoprotein C-terminal domain XSP_001212 PF01799 [2Fe-2S] binding domain XSP_001212 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_001218 PF00717 Peptidase S24-like XSP_001218 PF01726 LexA DNA binding domain XSP_001221 PF02811 PHP domain XSP_001221 PF14579 Helix-hairpin-helix motif XSP_001221 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XSP_001221 PF07733 Bacterial DNA polymerase III alpha NTPase domain XSP_001222 PF03169 OPT oligopeptide transporter protein XSP_001224 PF01011 PQQ enzyme repeat XSP_001225 PF04966 Carbohydrate-selective porin, OprB family XSP_001226 PF07676 WD40-like Beta Propeller Repeat XSP_001226 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_001226 PF00326 Prolyl oligopeptidase family XSP_001231 PF12833 Helix-turn-helix domain XSP_001231 PF02311 AraC-like ligand binding domain XSP_001232 PF00199 Catalase XSP_001232 PF06628 Catalase-related immune-responsive XSP_001232 PF18011 C-terminal domain found in long catalases XSP_001233 PF00248 Aldo/keto reductase family XSP_001234 PF00135 Carboxylesterase family XSP_001235 PF02347 Glycine cleavage system P-protein XSP_001236 PF07690 Major Facilitator Superfamily XSP_001240 PF00884 Sulfatase XSP_001240 PF08019 Phosphoethanolamine transferase EptA/EptB XSP_001242 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase XSP_001243 PF00072 Response regulator receiver domain XSP_001243 PF00486 Transcriptional regulatory protein, C terminal XSP_001244 PF00512 His Kinase A (phospho-acceptor) domain XSP_001244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001247 PF03776 Septum formation topological specificity factor MinE XSP_001248 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XSP_001249 PF05209 Septum formation inhibitor MinC, N-terminal domain XSP_001249 PF03775 Septum formation inhibitor MinC, C-terminal domain XSP_001251 PF07730 Histidine kinase XSP_001252 PF00196 Bacterial regulatory proteins, luxR family XSP_001252 PF00072 Response regulator receiver domain XSP_001255 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_001261 PF01370 NAD dependent epimerase/dehydratase family XSP_001261 PF02222 ATP-grasp domain XSP_001263 PF04377 Arginine-tRNA-protein transferase, C terminus XSP_001263 PF04376 Arginine-tRNA-protein transferase, N terminus XSP_001265 PF04542 Sigma-70 region 2 XSP_001265 PF08281 Sigma-70, region 4 XSP_001268 PF00378 Enoyl-CoA hydratase/isomerase XSP_001271 PF17760 UvrA interaction domain XSP_001271 PF00005 ABC transporter XSP_001271 PF17755 UvrA DNA-binding domain XSP_001272 PF00829 Ribosomal prokaryotic L21 protein XSP_001273 PF01016 Ribosomal L27 protein XSP_001274 PF01018 GTP1/OBG XSP_001274 PF01926 50S ribosome-binding GTPase XSP_001275 PF01649 Ribosomal protein S20 XSP_001276 PF03023 Lipid II flippase MurJ XSP_001277 PF01687 Riboflavin kinase XSP_001277 PF06574 FAD synthetase XSP_001278 PF00133 tRNA synthetases class I (I, L, M and V) XSP_001278 PF08264 Anticodon-binding domain of tRNA XSP_001278 PF06827 Zinc finger found in FPG and IleRS XSP_001279 PF01252 Signal peptidase (SPase) II XSP_001280 PF02401 LytB protein XSP_001282 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XSP_001282 PF06481 COX Aromatic Rich Motif XSP_001283 PF00115 Cytochrome C and Quinol oxidase polypeptide I XSP_001284 PF00510 Cytochrome c oxidase subunit III XSP_001285 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XSP_001287 PF18073 Rubredoxin metal binding domain XSP_001288 PF05656 Protein of unknown function (DUF805) XSP_001290 PF12833 Helix-turn-helix domain XSP_001291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001291 PF00183 Hsp90 protein XSP_001293 PF08678 Rsbr N terminal XSP_001293 PF01740 STAS domain XSP_001294 PF01740 STAS domain XSP_001295 PF13581 Histidine kinase-like ATPase domain XSP_001297 PF01627 Hpt domain XSP_001297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001297 PF00512 His Kinase A (phospho-acceptor) domain XSP_001297 PF17149 Periplasmic sensor domain found in signal transduction proteins XSP_001297 PF00072 Response regulator receiver domain XSP_001297 PF00672 HAMP domain XSP_001298 PF08448 PAS fold XSP_001298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001298 PF13188 PAS domain XSP_001298 PF00072 Response regulator receiver domain XSP_001298 PF00512 His Kinase A (phospho-acceptor) domain XSP_001299 PF07715 TonB-dependent Receptor Plug Domain XSP_001299 PF00593 TonB dependent receptor XSP_001300 PF00085 Thioredoxin XSP_001301 PF07237 Protein of unknown function (DUF1428) XSP_001302 PF02702 Osmosensitive K+ channel His kinase sensor domain XSP_001302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001302 PF13492 GAF domain XSP_001302 PF00512 His Kinase A (phospho-acceptor) domain XSP_001302 PF13493 Domain of unknown function (DUF4118) XSP_001303 PF01339 CheB methylesterase XSP_001304 PF03705 CheR methyltransferase, all-alpha domain XSP_001304 PF01739 CheR methyltransferase, SAM binding domain XSP_001305 PF01627 Hpt domain XSP_001305 PF00512 His Kinase A (phospho-acceptor) domain XSP_001305 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_001305 PF00672 HAMP domain XSP_001305 PF00072 Response regulator receiver domain XSP_001305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001306 PF00072 Response regulator receiver domain XSP_001306 PF13426 PAS domain XSP_001307 PF00072 Response regulator receiver domain XSP_001310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001310 PF03466 LysR substrate binding domain XSP_001311 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XSP_001312 PF01263 Aldose 1-epimerase XSP_001313 PF01578 Cytochrome C assembly protein XSP_001314 PF00448 SRP54-type protein, GTPase domain XSP_001314 PF02978 Signal peptide binding domain XSP_001314 PF02881 SRP54-type protein, helical bundle domain XSP_001315 PF03060 Nitronate monooxygenase XSP_001317 PF00886 Ribosomal protein S16 XSP_001318 PF01782 RimM N-terminal domain XSP_001318 PF05239 PRC-barrel domain XSP_001319 PF01746 tRNA (Guanine-1)-methyltransferase XSP_001320 PF01245 Ribosomal protein L19 XSP_001321 PF01554 MatE XSP_001322 PF01479 S4 domain XSP_001323 PF00141 Peroxidase XSP_001325 PF05188 MutS domain II XSP_001325 PF05190 MutS family domain IV XSP_001325 PF00488 MutS domain V XSP_001325 PF05192 MutS domain III XSP_001325 PF01624 MutS domain I XSP_001326 PF08359 YsiA-like protein, C-terminal region XSP_001326 PF00440 Bacterial regulatory proteins, tetR family XSP_001329 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001329 PF02743 Cache domain XSP_001329 PF00672 HAMP domain XSP_001332 PF04397 LytTr DNA-binding domain XSP_001332 PF00072 Response regulator receiver domain XSP_001334 PF03466 LysR substrate binding domain XSP_001334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XSP_001335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XSP_001335 PF00205 Thiamine pyrophosphate enzyme, central domain XSP_001338 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XSP_001338 PF00703 Glycosyl hydrolases family 2 XSP_001338 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XSP_001338 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_001338 PF16355 Domain of unknown function (DUF4982) XSP_001339 PF07745 Glycosyl hydrolase family 53 XSP_001341 PF09856 Predicted transcriptional regulator (DUF2083) XSP_001341 PF01381 Helix-turn-helix XSP_001341 PF06114 IrrE N-terminal-like domain XSP_001342 PF00171 Aldehyde dehydrogenase family XSP_001343 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001343 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001343 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001344 PF00378 Enoyl-CoA hydratase/isomerase XSP_001345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XSP_001345 PF00378 Enoyl-CoA hydratase/isomerase XSP_001345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XSP_001346 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XSP_001346 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_001348 PF01545 Cation efflux family XSP_001349 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XSP_001349 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XSP_001349 PF00378 Enoyl-CoA hydratase/isomerase XSP_001350 PF04542 Sigma-70 region 2 XSP_001350 PF08281 Sigma-70, region 4 XSP_001352 PF13180 PDZ domain XSP_001353 PF06421 GTP-binding protein LepA C-terminus XSP_001353 PF03144 Elongation factor Tu domain 2 XSP_001353 PF00009 Elongation factor Tu GTP binding domain XSP_001353 PF00679 Elongation factor G C-terminus XSP_001354 PF10502 Signal peptidase, peptidase S26 XSP_001356 PF00035 Double-stranded RNA binding motif XSP_001356 PF14622 Ribonuclease-III-like XSP_001357 PF01926 50S ribosome-binding GTPase XSP_001357 PF07650 KH domain XSP_001358 PF02565 Recombination protein O C terminal XSP_001358 PF11967 Recombination protein O N terminal XSP_001360 PF05958 tRNA (Uracil-5-)-methyltransferase XSP_001361 PF01928 CYTH domain XSP_001362 PF01323 DSBA-like thioredoxin domain XSP_001363 PF01593 Flavin containing amine oxidoreductase XSP_001364 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XSP_001365 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001366 PF00156 Phosphoribosyl transferase domain XSP_001367 PF01048 Phosphorylase superfamily XSP_001368 PF00313 'Cold-shock' DNA-binding domain XSP_001369 PF01494 FAD binding domain XSP_001371 PF08494 DEAD/H associated XSP_001371 PF00270 DEAD/DEAH box helicase XSP_001371 PF00271 Helicase conserved C-terminal domain XSP_001372 PF04679 ATP dependent DNA ligase C terminal region XSP_001372 PF01068 ATP dependent DNA ligase domain XSP_001372 PF04675 DNA ligase N terminus XSP_001374 PF04675 DNA ligase N terminus XSP_001374 PF01068 ATP dependent DNA ligase domain XSP_001374 PF04679 ATP dependent DNA ligase C terminal region XSP_001377 PF00990 Diguanylate cyclase, GGDEF domain XSP_001377 PF00072 Response regulator receiver domain XSP_001380 PF02803 Thiolase, C-terminal domain XSP_001380 PF00108 Thiolase, N-terminal domain XSP_001381 PF03797 Autotransporter beta-domain XSP_001381 PF12951 Passenger-associated-transport-repeat XSP_001381 PF00082 Subtilase family XSP_001382 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XSP_001382 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XSP_001384 PF01863 Protein of unknown function DUF45 XSP_001385 PF07043 Protein of unknown function (DUF1328) XSP_001387 PF01258 Prokaryotic dksA/traR C4-type zinc finger XSP_001391 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_001393 PF08274 PhnA Zinc-Ribbon XSP_001393 PF03831 PhnA domain XSP_001397 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_001398 PF07690 Major Facilitator Superfamily XSP_001404 PF03706 Lysylphosphatidylglycerol synthase TM region XSP_001404 PF09924 Uncharacterised conserved protein (DUF2156) XSP_001406 PF01042 Endoribonuclease L-PSP XSP_001415 PF04542 Sigma-70 region 2 XSP_001415 PF04545 Sigma-70, region 4 XSP_001418 PF04060 Putative Fe-S cluster XSP_001420 PF09334 tRNA synthetases class I (M) XSP_001420 PF01588 Putative tRNA binding domain XSP_001423 PF13732 Domain of unknown function (DUF4162) XSP_001423 PF00005 ABC transporter XSP_001424 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_001425 PF00324 Amino acid permease XSP_001426 PF02574 Homocysteine S-methyltransferase XSP_001429 PF01810 LysE type translocator XSP_001430 PF02592 Putative vitamin uptake transporter XSP_001434 PF03551 Transcriptional regulator PadR-like family XSP_001437 PF03653 Uncharacterised protein family (UPF0093) XSP_001438 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XSP_001439 PF07733 Bacterial DNA polymerase III alpha NTPase domain XSP_001439 PF14579 Helix-hairpin-helix motif XSP_001439 PF02811 PHP domain XSP_001439 PF01336 OB-fold nucleic acid binding domain XSP_001439 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XSP_001440 PF01351 Ribonuclease HII XSP_001441 PF02684 Lipid-A-disaccharide synthetase XSP_001442 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_001442 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XSP_001443 PF07977 FabA-like domain XSP_001444 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XSP_001444 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_001446 PF07244 Surface antigen variable number repeat XSP_001446 PF01103 Surface antigen XSP_001447 PF02163 Peptidase family M50 XSP_001447 PF17820 PDZ domain XSP_001448 PF13288 DXP reductoisomerase C-terminal domain XSP_001448 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XSP_001448 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XSP_001450 PF01255 Putative undecaprenyl diphosphate synthase XSP_001451 PF01765 Ribosome recycling factor XSP_001452 PF00696 Amino acid kinase family XSP_001453 PF00990 Diguanylate cyclase, GGDEF domain XSP_001453 PF00072 Response regulator receiver domain XSP_001454 PF00889 Elongation factor TS XSP_001455 PF00318 Ribosomal protein S2 XSP_001461 PF05229 Spore Coat Protein U domain XSP_001462 PF00557 Metallopeptidase family M24 XSP_001463 PF01909 Nucleotidyltransferase domain XSP_001463 PF01966 HD domain XSP_001463 PF08335 GlnD PII-uridylyltransferase XSP_001464 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XSP_001464 PF14602 Hexapeptide repeat of succinyl-transferase XSP_001464 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_001466 PF03960 ArsC family XSP_001467 PF01546 Peptidase family M20/M25/M40 XSP_001467 PF07687 Peptidase dimerisation domain XSP_001469 PF13537 Glutamine amidotransferase domain XSP_001469 PF00733 Asparagine synthase XSP_001471 PF00593 TonB dependent receptor XSP_001471 PF07715 TonB-dependent Receptor Plug Domain XSP_001472 PF01804 Penicillin amidase XSP_001473 PF00210 Ferritin-like domain XSP_001474 PF05724 Thiopurine S-methyltransferase (TPMT) XSP_001475 PF03989 DNA gyrase C-terminal domain, beta-propeller XSP_001475 PF00521 DNA gyrase/topoisomerase IV, subunit A XSP_001478 PF02321 Outer membrane efflux protein XSP_001479 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_001479 PF00529 HlyD membrane-fusion protein of T1SS XSP_001480 PF07690 Major Facilitator Superfamily XSP_001484 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_001484 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001484 PF14310 Fibronectin type III-like domain XSP_001486 PF00854 POT family XSP_001491 PF12802 MarR family XSP_001492 PF01432 Peptidase family M3 XSP_001493 PF00255 Glutathione peroxidase XSP_001494 PF00175 Oxidoreductase NAD-binding domain XSP_001494 PF00970 Oxidoreductase FAD-binding domain XSP_001495 PF00005 ABC transporter XSP_001496 PF05683 Fumarase C-terminus XSP_001496 PF05681 Fumarate hydratase (Fumerase) XSP_001499 PF00484 Carbonic anhydrase XSP_001500 PF02253 Phospholipase A1 XSP_001501 PF04306 Protein of unknown function (DUF456) XSP_001502 PF00313 'Cold-shock' DNA-binding domain XSP_001505 PF00899 ThiF family XSP_001506 PF01026 TatD related DNase XSP_001509 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001509 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001509 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001511 PF13417 Glutathione S-transferase, N-terminal domain XSP_001512 PF13537 Glutamine amidotransferase domain XSP_001512 PF00733 Asparagine synthase XSP_001513 PF03358 NADPH-dependent FMN reductase XSP_001514 PF03796 DnaB-like helicase C terminal domain XSP_001514 PF00772 DnaB-like helicase N terminal domain XSP_001515 PF00875 DNA photolyase XSP_001515 PF03441 FAD binding domain of DNA photolyase XSP_001516 PF00691 OmpA family XSP_001516 PF05736 OprF membrane domain XSP_001517 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001517 PF03466 LysR substrate binding domain XSP_001520 PF00529 HlyD membrane-fusion protein of T1SS XSP_001520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_001521 PF00873 AcrB/AcrD/AcrF family XSP_001522 PF00106 short chain dehydrogenase XSP_001523 PF02321 Outer membrane efflux protein XSP_001524 PF00990 Diguanylate cyclase, GGDEF domain XSP_001526 PF00990 Diguanylate cyclase, GGDEF domain XSP_001536 PF04002 RadC-like JAB domain XSP_001561 PF02534 Type IV secretory system Conjugative DNA transfer XSP_001566 PF00664 ABC transporter transmembrane region XSP_001566 PF00005 ABC transporter XSP_001566 PF03412 Peptidase C39 family XSP_001572 PF07690 Major Facilitator Superfamily XSP_001573 PF02794 RTX toxin acyltransferase family XSP_001580 PF00082 Subtilase family XSP_001581 PF01668 SmpB protein XSP_001583 PF03658 RnfH family Ubiquitin XSP_001584 PF04355 SmpA / OmlA family XSP_001585 PF01475 Ferric uptake regulator family XSP_001586 PF02463 RecF/RecN/SMC N terminal domain XSP_001587 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XSP_001587 PF01628 HrcA protein C terminal domain XSP_001588 PF01025 GrpE XSP_001589 PF00012 Hsp70 protein XSP_001590 PF01556 DnaJ C terminal domain XSP_001590 PF00684 DnaJ central domain XSP_001590 PF00226 DnaJ domain XSP_001591 PF08543 Phosphomethylpyrimidine kinase XSP_001596 PF03412 Peptidase C39 family XSP_001596 PF00005 ABC transporter XSP_001596 PF00664 ABC transporter transmembrane region XSP_001597 PF03466 LysR substrate binding domain XSP_001597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001598 PF00005 ABC transporter XSP_001598 PF00664 ABC transporter transmembrane region XSP_001599 PF01205 Uncharacterized protein family UPF0029 XSP_001600 PF03641 Possible lysine decarboxylase XSP_001601 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_001601 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XSP_001602 PF02817 e3 binding domain XSP_001602 PF00364 Biotin-requiring enzyme XSP_001602 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XSP_001603 PF00676 Dehydrogenase E1 component XSP_001603 PF16870 2-oxoglutarate dehydrogenase C-terminal XSP_001603 PF02779 Transketolase, pyrimidine binding domain XSP_001603 PF16078 2-oxoglutarate dehydrogenase N-terminus XSP_001605 PF08007 Cupin superfamily protein XSP_001606 PF00206 Lyase XSP_001606 PF08328 Adenylosuccinate lyase C-terminal XSP_001607 PF01595 Cyclin M transmembrane N-terminal domain XSP_001607 PF03471 Transporter associated domain XSP_001607 PF00571 CBS domain XSP_001608 PF10415 Fumarase C C-terminus XSP_001608 PF00206 Lyase XSP_001613 PF00005 ABC transporter XSP_001614 PF00392 Bacterial regulatory proteins, gntR family XSP_001616 PF00255 Glutathione peroxidase XSP_001617 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XSP_001617 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_001618 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XSP_001618 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XSP_001618 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XSP_001619 PF04102 SlyX XSP_001622 PF00356 Bacterial regulatory proteins, lacI family XSP_001623 PF07690 Major Facilitator Superfamily XSP_001624 PF00294 pfkB family carbohydrate kinase XSP_001626 PF02574 Homocysteine S-methyltransferase XSP_001626 PF02965 Vitamin B12 dependent methionine synthase, activation domain XSP_001626 PF02607 B12 binding domain XSP_001626 PF02310 B12 binding domain XSP_001626 PF00809 Pterin binding enzyme XSP_001627 PF00809 Pterin binding enzyme XSP_001627 PF02574 Homocysteine S-methyltransferase XSP_001628 PF01209 ubiE/COQ5 methyltransferase family XSP_001629 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001629 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001629 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001633 PF00575 S1 RNA binding domain XSP_001633 PF00773 RNB domain XSP_001633 PF08206 Ribonuclease B OB domain XSP_001633 PF08461 Ribonuclease R winged-helix domain XSP_001633 PF17876 Cold shock domain XSP_001635 PF00588 SpoU rRNA Methylase family XSP_001635 PF08032 RNA 2'-O ribose methyltransferase substrate binding XSP_001637 PF00990 Diguanylate cyclase, GGDEF domain XSP_001638 PF00929 Exonuclease XSP_001640 PF01895 PhoU domain XSP_001641 PF00005 ABC transporter XSP_001642 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001643 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001644 PF12849 PBP superfamily domain XSP_001645 PF12849 PBP superfamily domain XSP_001648 PF00484 Carbonic anhydrase XSP_001649 PF00916 Sulfate permease family XSP_001649 PF01740 STAS domain XSP_001650 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_001650 PF00633 Helix-hairpin-helix motif XSP_001650 PF10576 Iron-sulfur binding domain of endonuclease III XSP_001652 PF00378 Enoyl-CoA hydratase/isomerase XSP_001653 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_001653 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XSP_001654 PF00293 NUDIX domain XSP_001655 PF00581 Rhodanese-like domain XSP_001661 PF12848 ABC transporter XSP_001661 PF00005 ABC transporter XSP_001662 PF01170 Putative RNA methylase family UPF0020 XSP_001662 PF02926 THUMP domain XSP_001662 PF10672 S-adenosylmethionine-dependent methyltransferase XSP_001663 PF01513 ATP-NAD kinase XSP_001668 PF08411 Exonuclease C-terminal XSP_001668 PF00929 Exonuclease XSP_001669 PF01494 FAD binding domain XSP_001670 PF00266 Aminotransferase class-V XSP_001672 PF06052 3-hydroxyanthranilic acid dioxygenase XSP_001673 PF00484 Carbonic anhydrase XSP_001674 PF04299 Putative FMN-binding domain XSP_001677 PF01336 OB-fold nucleic acid binding domain XSP_001677 PF00152 tRNA synthetases class II (D, K and N) XSP_001678 PF01521 Iron-sulphur cluster biosynthesis XSP_001680 PF01250 Ribosomal protein S6 XSP_001681 PF01084 Ribosomal protein S18 XSP_001682 PF03948 Ribosomal protein L9, C-terminal domain XSP_001682 PF01281 Ribosomal protein L9, N-terminal domain XSP_001683 PF02463 RecF/RecN/SMC N terminal domain XSP_001684 PF04354 ZipA, C-terminal FtsZ-binding domain XSP_001686 PF00155 Aminotransferase class I and II XSP_001687 PF00533 BRCA1 C Terminus (BRCT) domain XSP_001687 PF01653 NAD-dependent DNA ligase adenylation domain XSP_001687 PF12826 Helix-hairpin-helix motif XSP_001687 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XSP_001687 PF03120 NAD-dependent DNA ligase OB-fold domain XSP_001688 PF00152 tRNA synthetases class II (D, K and N) XSP_001690 PF01008 Initiation factor 2 subunit family XSP_001691 PF03989 DNA gyrase C-terminal domain, beta-propeller XSP_001691 PF00521 DNA gyrase/topoisomerase IV, subunit A XSP_001692 PF13360 PQQ-like domain XSP_001695 PF17392 Urocanase C-terminal domain XSP_001695 PF17391 Urocanase N-terminal domain XSP_001695 PF01175 Urocanase Rossmann-like domain XSP_001697 PF00221 Aromatic amino acid lyase XSP_001698 PF07969 Amidohydrolase family XSP_001705 PF01794 Ferric reductase like transmembrane component XSP_001706 PF00174 Oxidoreductase molybdopterin binding domain XSP_001707 PF00266 Aminotransferase class-V XSP_001708 PF00800 Prephenate dehydratase XSP_001708 PF01842 ACT domain XSP_001708 PF01817 Chorismate mutase type II XSP_001709 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XSP_001711 PF03544 Gram-negative bacterial TonB protein C-terminal XSP_001712 PF02403 Seryl-tRNA synthetase N-terminal domain XSP_001712 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XSP_001713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001713 PF03466 LysR substrate binding domain XSP_001720 PF08281 Sigma-70, region 4 XSP_001720 PF04542 Sigma-70 region 2 XSP_001721 PF04773 FecR protein XSP_001721 PF16220 Domain of unknown function (DUF4880) XSP_001723 PF03150 Di-haem cytochrome c peroxidase XSP_001725 PF04304 Protein of unknown function (DUF454) XSP_001726 PF01126 Heme oxygenase XSP_001729 PF00593 TonB dependent receptor XSP_001729 PF07715 TonB-dependent Receptor Plug Domain XSP_001730 PF16220 Domain of unknown function (DUF4880) XSP_001730 PF04773 FecR protein XSP_001731 PF04542 Sigma-70 region 2 XSP_001731 PF08281 Sigma-70, region 4 XSP_001733 PF04002 RadC-like JAB domain XSP_001737 PF13361 UvrD-like helicase C-terminal domain XSP_001737 PF00580 UvrD/REP helicase N-terminal domain XSP_001737 PF12705 PD-(D/E)XK nuclease superfamily XSP_001752 PF05974 Domain of unknown function (DUF892) XSP_001754 PF13298 DNA polymerase Ligase (LigD) XSP_001754 PF01068 ATP dependent DNA ligase domain XSP_001754 PF04679 ATP dependent DNA ligase C terminal region XSP_001757 PF00672 HAMP domain XSP_001757 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001757 PF02203 Tar ligand binding domain homologue XSP_001760 PF02203 Tar ligand binding domain homologue XSP_001760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001760 PF00672 HAMP domain XSP_001766 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001766 PF00672 HAMP domain XSP_001766 PF02203 Tar ligand binding domain homologue XSP_001767 PF01494 FAD binding domain XSP_001769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001769 PF00512 His Kinase A (phospho-acceptor) domain XSP_001769 PF08448 PAS fold XSP_001769 PF13188 PAS domain XSP_001769 PF00072 Response regulator receiver domain XSP_001770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001770 PF13426 PAS domain XSP_001770 PF00072 Response regulator receiver domain XSP_001771 PF06745 KaiC XSP_001772 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001772 PF13426 PAS domain XSP_001772 PF00072 Response regulator receiver domain XSP_001774 PF03918 Cytochrome C biogenesis protein XSP_001775 PF08534 Redoxin XSP_001776 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XSP_001776 PF01578 Cytochrome C assembly protein XSP_001777 PF03100 CcmE XSP_001779 PF01578 Cytochrome C assembly protein XSP_001780 PF00082 Subtilase family XSP_001782 PF08281 Sigma-70, region 4 XSP_001782 PF04542 Sigma-70 region 2 XSP_001784 PF00034 Cytochrome c XSP_001787 PF05523 WxcM-like, C-terminal XSP_001791 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XSP_001792 PF01943 Polysaccharide biosynthesis protein XSP_001793 PF00535 Glycosyl transferase family 2 XSP_001796 PF05958 tRNA (Uracil-5-)-methyltransferase XSP_001798 PF01209 ubiE/COQ5 methyltransferase family XSP_001799 PF13439 Glycosyltransferase Family 4 XSP_001799 PF00534 Glycosyl transferases group 1 XSP_001800 PF00534 Glycosyl transferases group 1 XSP_001800 PF13579 Glycosyl transferase 4-like domain XSP_001803 PF06745 KaiC XSP_001804 PF00664 ABC transporter transmembrane region XSP_001804 PF00005 ABC transporter XSP_001805 PF07690 Major Facilitator Superfamily XSP_001806 PF00296 Luciferase-like monooxygenase XSP_001809 PF01595 Cyclin M transmembrane N-terminal domain XSP_001809 PF03471 Transporter associated domain XSP_001809 PF00571 CBS domain XSP_001811 PF01384 Phosphate transporter family XSP_001814 PF01751 Toprim domain XSP_001814 PF00986 DNA gyrase B subunit, carboxyl terminus XSP_001814 PF00204 DNA gyrase B XSP_001814 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001816 PF00117 Glutamine amidotransferase class-I XSP_001816 PF06418 CTP synthase N-terminus XSP_001817 PF00793 DAHP synthetase I family XSP_001818 PF03952 Enolase, N-terminal domain XSP_001818 PF00113 Enolase, C-terminal TIM barrel domain XSP_001819 PF04977 Septum formation initiator XSP_001820 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XSP_001821 PF02542 YgbB family XSP_001822 PF01142 tRNA pseudouridine synthase D (TruD) XSP_001823 PF01713 Smr domain XSP_001824 PF01975 Survival protein SurE XSP_001826 PF09335 SNARE associated Golgi protein XSP_001827 PF01476 LysM domain XSP_001827 PF01551 Peptidase family M23 XSP_001829 PF01985 CRS1 / YhbY (CRM) domain XSP_001830 PF01728 FtsJ-like methyltransferase XSP_001831 PF00004 ATPase family associated with various cellular activities (AAA) XSP_001831 PF06480 FtsH Extracellular XSP_001831 PF17862 AAA+ lid domain XSP_001831 PF01434 Peptidase family M41 XSP_001832 PF00809 Pterin binding enzyme XSP_001834 PF17209 Hfq protein XSP_001835 PF01926 50S ribosome-binding GTPase XSP_001835 PF16360 GTP-binding GTPase Middle Region XSP_001835 PF13167 GTP-binding GTPase N-terminal XSP_001836 PF02464 Competence-damaged protein XSP_001838 PF03109 ABC1 family XSP_001839 PF01726 LexA DNA binding domain XSP_001839 PF00717 Peptidase S24-like XSP_001840 PF00154 recA bacterial DNA recombination protein XSP_001841 PF02631 RecX family XSP_001842 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XSP_001842 PF01411 tRNA synthetases class II (A) XSP_001842 PF02272 DHHA1 domain XSP_001843 PF02599 Global regulator protein family XSP_001845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001845 PF13426 PAS domain XSP_001845 PF08447 PAS fold XSP_001846 PF02678 Pirin XSP_001846 PF17954 Quercetinase C-terminal cupin domain XSP_001847 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001847 PF03466 LysR substrate binding domain XSP_001852 PF02581 Thiamine monophosphate synthase XSP_001852 PF08543 Phosphomethylpyrimidine kinase XSP_001855 PF13638 PIN domain XSP_001855 PF02562 PhoH-like protein XSP_001856 PF00578 AhpC/TSA family XSP_001859 PF00701 Dihydrodipicolinate synthetase family XSP_001861 PF00037 4Fe-4S binding domain XSP_001861 PF11953 Domain of unknown function (DUF3470) XSP_001862 PF05035 2-keto-3-deoxy-galactonokinase XSP_001863 PF08450 SMP-30/Gluconolactonase/LRE-like region XSP_001864 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_001864 PF13378 Enolase C-terminal domain-like XSP_001865 PF01081 KDPG and KHG aldolase XSP_001866 PF03466 LysR substrate binding domain XSP_001866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001869 PF00942 Cellulose binding domain XSP_001869 PF03442 Carbohydrate binding domain X2 XSP_001872 PF16338 Domain of unknown function (DUF4968) XSP_001872 PF17137 Domain of unknown function (DUF5110) XSP_001872 PF01055 Glycosyl hydrolases family 31 XSP_001874 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XSP_001874 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XSP_001876 PF00083 Sugar (and other) transporter XSP_001880 PF01520 N-acetylmuramoyl-L-alanine amidase XSP_001881 PF02649 Type I GTP cyclohydrolase folE2 XSP_001883 PF12626 Polymerase A arginine-rich C-terminus XSP_001883 PF12627 Probable RNA and SrmB- binding site of polymerase A XSP_001883 PF01743 Poly A polymerase head domain XSP_001884 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XSP_001885 PF02548 Ketopantoate hydroxymethyltransferase XSP_001886 PF02569 Pantoate-beta-alanine ligase XSP_001887 PF02261 Aspartate decarboxylase XSP_001888 PF00342 Phosphoglucose isomerase XSP_001892 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001892 PF14310 Fibronectin type III-like domain XSP_001892 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_001893 PF00474 Sodium:solute symporter family XSP_001894 PF00990 Diguanylate cyclase, GGDEF domain XSP_001894 PF00360 Phytochrome region XSP_001894 PF00563 EAL domain XSP_001894 PF01590 GAF domain XSP_001895 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_001895 PF02013 Cellulose or protein binding domain XSP_001896 PF00072 Response regulator receiver domain XSP_001898 PF04551 GcpE protein XSP_001899 PF01569 PAP2 superfamily XSP_001900 PF07690 Major Facilitator Superfamily XSP_001901 PF01177 Asp/Glu/Hydantoin racemase XSP_001902 PF00892 EamA-like transporter family XSP_001903 PF01565 FAD binding domain XSP_001903 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XSP_001904 PF01180 Dihydroorotate dehydrogenase XSP_001907 PF00171 Aldehyde dehydrogenase family XSP_001913 PF00535 Glycosyl transferase family 2 XSP_001914 PF01522 Polysaccharide deacetylase XSP_001914 PF14883 Hypothetical glycosyl hydrolase family 13 XSP_001916 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XSP_001916 PF08479 POTRA domain, ShlB-type XSP_001916 PF17287 POTRA domain XSP_001920 PF05594 Haemagluttinin repeat XSP_001920 PF05860 haemagglutination activity domain XSP_001920 PF13332 Hemagglutinin repeat XSP_001920 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain XSP_001920 PF13018 Extended Signal Peptide of Type V secretion system XSP_001921 PF03073 TspO/MBR family XSP_001922 PF03447 Homoserine dehydrogenase, NAD binding domain XSP_001922 PF00742 Homoserine dehydrogenase XSP_001922 PF00696 Amino acid kinase family XSP_001922 PF13840 ACT domain XSP_001922 PF01842 ACT domain XSP_001923 PF08544 GHMP kinases C terminal XSP_001923 PF00288 GHMP kinases N terminal domain XSP_001925 PF14821 Threonine synthase N terminus XSP_001925 PF00291 Pyridoxal-phosphate dependent enzyme XSP_001927 PF13545 Crp-like helix-turn-helix domain XSP_001927 PF00027 Cyclic nucleotide-binding domain XSP_001928 PF13393 Histidyl-tRNA synthetase XSP_001928 PF03129 Anticodon binding domain XSP_001930 PF08029 HisG, C-terminal domain XSP_001930 PF01634 ATP phosphoribosyltransferase XSP_001931 PF00815 Histidinol dehydrogenase XSP_001932 PF00155 Aminotransferase class I and II XSP_001933 PF00475 Imidazoleglycerol-phosphate dehydratase XSP_001934 PF00117 Glutamine amidotransferase class-I XSP_001935 PF00977 Histidine biosynthesis protein XSP_001936 PF00977 Histidine biosynthesis protein XSP_001937 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XSP_001937 PF01502 Phosphoribosyl-AMP cyclohydrolase XSP_001941 PF03079 ARD/ARD' family XSP_001942 PF00596 Class II Aldolase and Adducin N-terminal domain XSP_001943 PF13520 Amino acid permease XSP_001944 PF13520 Amino acid permease XSP_001946 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_001946 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_001947 PF02913 FAD linked oxidases, C-terminal domain XSP_001947 PF01565 FAD binding domain XSP_001951 PF08207 Elongation factor P (EF-P) KOW-like domain XSP_001951 PF01132 Elongation factor P (EF-P) OB domain XSP_001951 PF09285 Elongation factor P, C-terminal XSP_001952 PF00106 short chain dehydrogenase XSP_001953 PF00682 HMGL-like XSP_001954 PF00378 Enoyl-CoA hydratase/isomerase XSP_001956 PF02421 Ferrous iron transport protein B XSP_001956 PF07664 Ferrous iron transport protein B C terminus XSP_001956 PF07670 Nucleoside recognition XSP_001959 PF00155 Aminotransferase class I and II XSP_001960 PF03475 3-alpha domain XSP_001960 PF03473 MOSC domain XSP_001961 PF01113 Dihydrodipicolinate reductase, N-terminus XSP_001961 PF05173 Dihydrodipicolinate reductase, C-terminus XSP_001962 PF00117 Glutamine amidotransferase class-I XSP_001962 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XSP_001964 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XSP_001964 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XSP_001964 PF02142 MGS-like domain XSP_001965 PF03449 Transcription elongation factor, N-terminal XSP_001965 PF01272 Transcription elongation factor, GreA/GreB, C-term XSP_001967 PF17768 RecJ OB domain XSP_001967 PF01368 DHH family XSP_001967 PF02272 DHHA1 domain XSP_001970 PF04397 LytTr DNA-binding domain XSP_001970 PF00072 Response regulator receiver domain XSP_001972 PF01336 OB-fold nucleic acid binding domain XSP_001972 PF00152 tRNA synthetases class II (D, K and N) XSP_001973 PF00072 Response regulator receiver domain XSP_001974 PF00512 His Kinase A (phospho-acceptor) domain XSP_001974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001974 PF00072 Response regulator receiver domain XSP_001974 PF01627 Hpt domain XSP_001975 PF00378 Enoyl-CoA hydratase/isomerase XSP_001976 PF13193 AMP-binding enzyme C-terminal domain XSP_001976 PF00501 AMP-binding enzyme XSP_001978 PF00330 Aconitase family (aconitate hydratase) XSP_001978 PF00694 Aconitase C-terminal domain XSP_001981 PF11791 Aconitate B N-terminal domain XSP_001981 PF00330 Aconitase family (aconitate hydratase) XSP_001981 PF06434 Aconitate hydratase 2 N-terminus XSP_001982 PF00561 alpha/beta hydrolase fold XSP_001983 PF00563 EAL domain XSP_001983 PF03707 Bacterial signalling protein N terminal repeat XSP_001983 PF00990 Diguanylate cyclase, GGDEF domain XSP_001984 PF01339 CheB methylesterase XSP_001984 PF00072 Response regulator receiver domain XSP_001985 PF03975 CheD chemotactic sensory transduction XSP_001986 PF01739 CheR methyltransferase, SAM binding domain XSP_001986 PF03705 CheR methyltransferase, all-alpha domain XSP_001987 PF00672 HAMP domain XSP_001987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001987 PF02203 Tar ligand binding domain homologue XSP_001989 PF01584 CheW-like domain XSP_001990 PF07238 PilZ domain XSP_001990 PF07317 Flagellar regulator YcgR XSP_001991 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001991 PF02203 Tar ligand binding domain homologue XSP_001991 PF00672 HAMP domain XSP_001992 PF00672 HAMP domain XSP_001992 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001993 PF02203 Tar ligand binding domain homologue XSP_001993 PF00672 HAMP domain XSP_001993 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001994 PF00672 HAMP domain XSP_001994 PF02203 Tar ligand binding domain homologue XSP_001994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001995 PF00672 HAMP domain XSP_001995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001995 PF02203 Tar ligand binding domain homologue XSP_001997 PF00672 HAMP domain XSP_001997 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001997 PF02203 Tar ligand binding domain homologue XSP_001998 PF00672 HAMP domain XSP_001998 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001999 PF08269 Cache domain XSP_001999 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002001 PF01627 Hpt domain XSP_002001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002001 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_002001 PF09078 CheY binding XSP_002001 PF01584 CheW-like domain XSP_002002 PF00072 Response regulator receiver domain XSP_002004 PF01584 CheW-like domain XSP_002005 PF13614 AAA domain XSP_002006 PF00691 OmpA family XSP_002006 PF13677 Membrane MotB of proton-channel complex MotA/MotB XSP_002007 PF01618 MotA/TolQ/ExbB proton channel family XSP_002009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002009 PF03466 LysR substrate binding domain XSP_002010 PF07690 Major Facilitator Superfamily XSP_002015 PF00144 Beta-lactamase XSP_002021 PF01627 Hpt domain XSP_002021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002021 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_002021 PF01584 CheW-like domain XSP_002021 PF00072 Response regulator receiver domain XSP_002022 PF04344 Chemotaxis phosphatase, CheZ XSP_002023 PF00072 Response regulator receiver domain XSP_002024 PF04539 Sigma-70 region 3 XSP_002024 PF04545 Sigma-70, region 4 XSP_002024 PF04542 Sigma-70 region 2 XSP_002025 PF10609 NUBPL iron-transfer P-loop NTPase XSP_002026 PF00448 SRP54-type protein, GTPase domain XSP_002027 PF00771 FHIPEP family XSP_002028 PF01312 FlhB HrpN YscU SpaS Family XSP_002029 PF00563 EAL domain XSP_002029 PF00990 Diguanylate cyclase, GGDEF domain XSP_002029 PF03707 Bacterial signalling protein N terminal repeat XSP_002030 PF00990 Diguanylate cyclase, GGDEF domain XSP_002031 PF00990 Diguanylate cyclase, GGDEF domain XSP_002032 PF01311 Bacterial export proteins, family 1 XSP_002033 PF01313 Bacterial export proteins, family 3 XSP_002034 PF00813 FliP family XSP_002035 PF04347 Flagellar biosynthesis protein, FliO XSP_002036 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XSP_002037 PF02154 Flagellar motor switch protein FliM XSP_002037 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XSP_002041 PF18269 T3SS EscN ATPase C-terminal domain XSP_002041 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_002043 PF14841 FliG middle domain XSP_002043 PF01706 FliG C-terminal domain XSP_002043 PF14842 FliG N-terminal domain XSP_002044 PF01514 Secretory protein of YscJ/FliF family XSP_002044 PF08345 Flagellar M-ring protein C-terminal XSP_002045 PF02049 Flagellar hook-basal body complex protein FliE XSP_002046 PF00535 Glycosyl transferase family 2 XSP_002048 PF02348 Cytidylyltransferase XSP_002056 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_002056 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_002058 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XSP_002059 PF02954 Bacterial regulatory protein, Fis family XSP_002059 PF06490 Flagellar regulatory protein FleQ XSP_002059 PF00158 Sigma-54 interaction domain XSP_002060 PF00072 Response regulator receiver domain XSP_002060 PF01339 CheB methylesterase XSP_002061 PF04552 Sigma-54, DNA binding domain XSP_002061 PF04963 Sigma-54 factor, core binding domain XSP_002061 PF00309 Sigma-54 factor, Activator interacting domain (AID) XSP_002062 PF00196 Bacterial regulatory proteins, luxR family XSP_002062 PF00072 Response regulator receiver domain XSP_002065 PF02561 Flagellar protein FliS XSP_002066 PF02465 Flagellar hook-associated protein 2 N-terminus XSP_002066 PF07195 Flagellar hook-associated protein 2 C-terminus XSP_002066 PF07196 Flagellin hook IN motif XSP_002067 PF07196 Flagellin hook IN motif XSP_002067 PF00669 Bacterial flagellin N-terminal helical region XSP_002067 PF00700 Bacterial flagellin C-terminal helical region XSP_002069 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002069 PF07196 Flagellin hook IN motif XSP_002070 PF10135 Rod binding protein XSP_002070 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XSP_002071 PF02119 Flagellar P-ring protein XSP_002072 PF02107 Flagellar L-ring protein XSP_002073 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002073 PF00460 Flagella basal body rod protein XSP_002074 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002074 PF00460 Flagella basal body rod protein XSP_002075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002075 PF07559 Flagellar basal body protein FlaE XSP_002075 PF00460 Flagella basal body rod protein XSP_002076 PF03963 Flagellar hook capping protein - N-terminal region XSP_002077 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002077 PF00460 Flagella basal body rod protein XSP_002079 PF00072 Response regulator receiver domain XSP_002079 PF01584 CheW-like domain XSP_002083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002083 PF00512 His Kinase A (phospho-acceptor) domain XSP_002084 PF03707 Bacterial signalling protein N terminal repeat XSP_002084 PF00990 Diguanylate cyclase, GGDEF domain XSP_002084 PF00563 EAL domain XSP_002085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002085 PF07730 Histidine kinase XSP_002086 PF00563 EAL domain XSP_002086 PF00990 Diguanylate cyclase, GGDEF domain XSP_002086 PF03707 Bacterial signalling protein N terminal repeat XSP_002088 PF12729 Four helix bundle sensory module for signal transduction XSP_002088 PF00672 HAMP domain XSP_002088 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002089 PF04356 Protein of unknown function (DUF489) XSP_002091 PF00293 NUDIX domain XSP_002093 PF02617 ATP-dependent Clp protease adaptor protein ClpS XSP_002094 PF00004 ATPase family associated with various cellular activities (AAA) XSP_002094 PF02861 Clp amino terminal domain, pathogenicity island component XSP_002094 PF17871 AAA lid domain XSP_002094 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_002094 PF07724 AAA domain (Cdc48 subfamily) XSP_002095 PF01176 Translation initiation factor 1A / IF-1 XSP_002096 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XSP_002098 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002099 PF09397 Ftsk gamma domain XSP_002099 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XSP_002099 PF01580 FtsK/SpoIIIE family XSP_002099 PF17854 FtsK alpha domain XSP_002101 PF03548 Outer membrane lipoprotein carrier protein LolA XSP_002102 PF12002 MgsA AAA+ ATPase C terminal XSP_002102 PF16193 AAA C-terminal domain XSP_002102 PF00004 ATPase family associated with various cellular activities (AAA) XSP_002103 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XSP_002104 PF02803 Thiolase, C-terminal domain XSP_002104 PF00108 Thiolase, N-terminal domain XSP_002105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XSP_002105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XSP_002105 PF00378 Enoyl-CoA hydratase/isomerase XSP_002107 PF00334 Nucleoside diphosphate kinase XSP_002108 PF04055 Radical SAM superfamily XSP_002110 PF13464 Domain of unknown function (DUF4115) XSP_002112 PF13360 PQQ-like domain XSP_002112 PF01011 PQQ enzyme repeat XSP_002113 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XSP_002113 PF01926 50S ribosome-binding GTPase XSP_002114 PF03453 MoeA N-terminal region (domain I and II) XSP_002114 PF00994 Probable molybdopterin binding domain XSP_002114 PF03454 MoeA C-terminal region (domain IV) XSP_002115 PF00899 ThiF family XSP_002118 PF03372 Endonuclease/Exonuclease/phosphatase family XSP_002120 PF03453 MoeA N-terminal region (domain I and II) XSP_002120 PF03454 MoeA C-terminal region (domain IV) XSP_002120 PF00994 Probable molybdopterin binding domain XSP_002121 PF12804 MobA-like NTP transferase domain XSP_002123 PF10414 Sirohaem synthase dimerisation region XSP_002123 PF14824 Sirohaem biosynthesis protein central XSP_002123 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_002124 PF03861 ANTAR domain XSP_002124 PF00072 Response regulator receiver domain XSP_002127 PF07690 Major Facilitator Superfamily XSP_002128 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XSP_002128 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XSP_002128 PF18267 Rubredoxin NAD+ reductase C-terminal domain XSP_002128 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002128 PF04324 BFD-like [2Fe-2S] binding domain XSP_002129 PF00355 Rieske [2Fe-2S] domain XSP_002129 PF11723 Homotrimeric ring hydroxylase XSP_002130 PF01568 Molydopterin dinucleotide binding domain XSP_002130 PF00384 Molybdopterin oxidoreductase XSP_002130 PF04324 BFD-like [2Fe-2S] binding domain XSP_002130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XSP_002131 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_002134 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XSP_002136 PF00483 Nucleotidyl transferase XSP_002138 PF01266 FAD dependent oxidoreductase XSP_002142 PF08447 PAS fold XSP_002142 PF08448 PAS fold XSP_002142 PF00563 EAL domain XSP_002142 PF00990 Diguanylate cyclase, GGDEF domain XSP_002143 PF12951 Passenger-associated-transport-repeat XSP_002143 PF12951 Passenger-associated-transport-repeat XSP_002144 PF00082 Subtilase family XSP_002144 PF03797 Autotransporter beta-domain XSP_002149 PF07995 Glucose / Sorbosone dehydrogenase XSP_002151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002151 PF00072 Response regulator receiver domain XSP_002151 PF13426 PAS domain XSP_002157 PF01494 FAD binding domain XSP_002158 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_002159 PF00672 HAMP domain XSP_002159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002160 PF03466 LysR substrate binding domain XSP_002160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002162 PF07690 Major Facilitator Superfamily XSP_002166 PF03466 LysR substrate binding domain XSP_002166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002168 PF01062 Bestrophin, RFP-TM, chloride channel XSP_002170 PF00072 Response regulator receiver domain XSP_002170 PF00196 Bacterial regulatory proteins, luxR family XSP_002173 PF00106 short chain dehydrogenase XSP_002189 PF00501 AMP-binding enzyme XSP_002189 PF13193 AMP-binding enzyme C-terminal domain XSP_002189 PF00668 Condensation domain XSP_002189 PF07993 Male sterility protein XSP_002189 PF00550 Phosphopantetheine attachment site XSP_002189 PF00501 AMP-binding enzyme XSP_002189 PF13193 AMP-binding enzyme C-terminal domain XSP_002189 PF00668 Condensation domain XSP_002189 PF00550 Phosphopantetheine attachment site XSP_002189 PF07993 Male sterility protein XSP_002190 PF00975 Thioesterase domain XSP_002190 PF00668 Condensation domain XSP_002190 PF13193 AMP-binding enzyme C-terminal domain XSP_002190 PF00501 AMP-binding enzyme XSP_002190 PF00550 Phosphopantetheine attachment site XSP_002191 PF00550 Phosphopantetheine attachment site XSP_002191 PF00668 Condensation domain XSP_002191 PF13193 AMP-binding enzyme C-terminal domain XSP_002191 PF00501 AMP-binding enzyme XSP_002192 PF00501 AMP-binding enzyme XSP_002192 PF13193 AMP-binding enzyme C-terminal domain XSP_002192 PF00668 Condensation domain XSP_002192 PF00550 Phosphopantetheine attachment site XSP_002193 PF00501 AMP-binding enzyme XSP_002193 PF13193 AMP-binding enzyme C-terminal domain XSP_002193 PF00668 Condensation domain XSP_002193 PF00975 Thioesterase domain XSP_002193 PF00550 Phosphopantetheine attachment site XSP_002194 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_002195 PF12704 MacB-like periplasmic core domain XSP_002195 PF00005 ABC transporter XSP_002195 PF02687 FtsX-like permease family XSP_002199 PF00155 Aminotransferase class I and II XSP_002200 PF01804 Penicillin amidase XSP_002201 PF00664 ABC transporter transmembrane region XSP_002201 PF00005 ABC transporter XSP_002203 PF01070 FMN-dependent dehydrogenase XSP_002206 PF07516 SecA Wing and Scaffold domain XSP_002206 PF02810 SEC-C motif XSP_002206 PF01043 SecA preprotein cross-linking domain XSP_002206 PF07517 SecA DEAD-like domain XSP_002215 PF01106 NifU-like domain XSP_002216 PF01329 Pterin 4 alpha carbinolamine dehydratase XSP_002218 PF02535 ZIP Zinc transporter XSP_002219 PF01479 S4 domain XSP_002219 PF00849 RNA pseudouridylate synthase XSP_002220 PF10150 Ribonuclease E/G family XSP_002220 PF00575 S1 RNA binding domain XSP_002220 PF12111 Polyribonucleotide phosphorylase C terminal XSP_002221 PF00196 Bacterial regulatory proteins, luxR family XSP_002221 PF00072 Response regulator receiver domain XSP_002222 PF17773 UPF0176 acylphosphatase like domain XSP_002222 PF00581 Rhodanese-like domain XSP_002224 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_002226 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XSP_002226 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XSP_002226 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XSP_002231 PF01066 CDP-alcohol phosphatidyltransferase XSP_002232 PF08459 UvrC Helix-hairpin-helix N-terminal XSP_002232 PF02151 UvrB/uvrC motif XSP_002232 PF01541 GIY-YIG catalytic domain XSP_002234 PF01451 Low molecular weight phosphotyrosine protein phosphatase XSP_002235 PF02348 Cytidylyltransferase XSP_002237 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XSP_002238 PF00664 ABC transporter transmembrane region XSP_002238 PF00005 ABC transporter XSP_002240 PF01618 MotA/TolQ/ExbB proton channel family XSP_002241 PF03772 Competence protein XSP_002241 PF00753 Metallo-beta-lactamase superfamily XSP_002243 PF00005 ABC transporter XSP_002244 PF12704 MacB-like periplasmic core domain XSP_002244 PF02687 FtsX-like permease family XSP_002246 PF03937 Flavinator of succinate dehydrogenase XSP_002247 PF13085 2Fe-2S iron-sulfur cluster binding domain XSP_002249 PF00890 FAD binding domain XSP_002249 PF02910 Fumarate reductase flavoprotein C-term XSP_002250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XSP_002251 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XSP_002254 PF17912 MalK OB fold domain XSP_002254 PF00005 ABC transporter XSP_002255 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XSP_002255 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XSP_002256 PF02685 Glucokinase XSP_002257 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XSP_002258 PF00920 Dehydratase family XSP_002259 PF01081 KDPG and KHG aldolase XSP_002260 PF00873 AcrB/AcrD/AcrF family XSP_002261 PF00873 AcrB/AcrD/AcrF family XSP_002262 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_002264 PF00034 Cytochrome c XSP_002278 PF00672 HAMP domain XSP_002278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002278 PF00512 His Kinase A (phospho-acceptor) domain XSP_002278 PF01627 Hpt domain XSP_002278 PF00072 Response regulator receiver domain XSP_002278 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_002279 PF17674 HHH domain XSP_002279 PF00575 S1 RNA binding domain XSP_002279 PF09371 Tex-like protein N-terminal domain XSP_002279 PF16921 Tex protein YqgF-like domain XSP_002281 PF01266 FAD dependent oxidoreductase XSP_002281 PF00355 Rieske [2Fe-2S] domain XSP_002284 PF00561 alpha/beta hydrolase fold XSP_002286 PF01066 CDP-alcohol phosphatidyltransferase XSP_002290 PF03618 Kinase/pyrophosphorylase XSP_002291 PF00391 PEP-utilising enzyme, mobile domain XSP_002291 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XSP_002291 PF02896 PEP-utilising enzyme, TIM barrel domain XSP_002292 PF00924 Mechanosensitive ion channel XSP_002292 PF05552 Conserved TM helix XSP_002293 PF00929 Exonuclease XSP_002294 PF14437 MafB19-like deaminase XSP_002295 PF02742 Iron dependent repressor, metal binding and dimerisation domain XSP_002295 PF01325 Iron dependent repressor, N-terminal DNA binding domain XSP_002296 PF01566 Natural resistance-associated macrophage protein XSP_002297 PF00561 alpha/beta hydrolase fold XSP_002300 PF02540 NAD synthase XSP_002300 PF00958 GMP synthase C terminal domain XSP_002300 PF00117 Glutamine amidotransferase class-I XSP_002301 PF00571 CBS domain XSP_002301 PF00478 IMP dehydrogenase / GMP reductase domain XSP_002302 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XSP_002302 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XSP_002304 PF00483 Nucleotidyl transferase XSP_002305 PF02719 Polysaccharide biosynthesis protein XSP_002306 PF00953 Glycosyl transferase family 4 XSP_002307 PF18073 Rubredoxin metal binding domain XSP_002309 PF00216 Bacterial DNA-binding protein XSP_002310 PF00575 S1 RNA binding domain XSP_002311 PF02224 Cytidylate kinase XSP_002312 PF00444 Ribosomal protein L36 XSP_002314 PF04371 Porphyromonas-type peptidyl-arginine deiminase XSP_002315 PF00795 Carbon-nitrogen hydrolase XSP_002320 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002321 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002325 PF00356 Bacterial regulatory proteins, lacI family XSP_002327 PF03795 YCII-related domain XSP_002328 PF02616 Segregation and condensation protein ScpA XSP_002329 PF04079 Segregation and condensation complex subunit ScpB XSP_002330 PF00849 RNA pseudouridylate synthase XSP_002330 PF01479 S4 domain XSP_002333 PF00795 Carbon-nitrogen hydrolase XSP_002334 PF00155 Aminotransferase class I and II XSP_002335 PF00005 ABC transporter XSP_002336 PF03379 CcmB protein XSP_002337 PF01578 Cytochrome C assembly protein XSP_002339 PF03100 CcmE XSP_002340 PF01578 Cytochrome C assembly protein XSP_002340 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XSP_002341 PF08534 Redoxin XSP_002342 PF03918 Cytochrome C biogenesis protein XSP_002344 PF00561 alpha/beta hydrolase fold XSP_002347 PF00005 ABC transporter XSP_002347 PF00664 ABC transporter transmembrane region XSP_002348 PF00664 ABC transporter transmembrane region XSP_002348 PF00005 ABC transporter XSP_002349 PF01654 Cytochrome bd terminal oxidase subunit I XSP_002350 PF02322 Cytochrome bd terminal oxidase subunit II XSP_002354 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XSP_002354 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XSP_002357 PF00171 Aldehyde dehydrogenase family XSP_002358 PF00696 Amino acid kinase family XSP_002358 PF01472 PUA domain XSP_002361 PF00206 Lyase XSP_002362 PF01118 Semialdehyde dehydrogenase, NAD binding domain XSP_002364 PF00696 Amino acid kinase family XSP_002364 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XSP_002365 PF07687 Peptidase dimerisation domain XSP_002365 PF01546 Peptidase family M20/M25/M40 XSP_002366 PF00764 Arginosuccinate synthase XSP_002367 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XSP_002367 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XSP_002369 PF01406 tRNA synthetases class I (C) catalytic domain XSP_002369 PF09190 DALR domain XSP_002370 PF02657 Fe-S metabolism associated domain XSP_002372 PF01258 Prokaryotic dksA/traR C4-type zinc finger XSP_002373 PF01809 Putative membrane protein insertion efficiency factor XSP_002374 PF01979 Amidohydrolase family XSP_002375 PF08460 Bacterial SH3 domain XSP_002375 PF01551 Peptidase family M23 XSP_002377 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XSP_002378 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XSP_002387 PF13419 Haloacid dehalogenase-like hydrolase XSP_002389 PF01979 Amidohydrolase family XSP_002391 PF08207 Elongation factor P (EF-P) KOW-like domain XSP_002391 PF09285 Elongation factor P, C-terminal XSP_002391 PF01132 Elongation factor P (EF-P) OB domain XSP_002392 PF04055 Radical SAM superfamily XSP_002393 PF13188 PAS domain XSP_002393 PF03707 Bacterial signalling protein N terminal repeat XSP_002393 PF00990 Diguanylate cyclase, GGDEF domain XSP_002393 PF00563 EAL domain XSP_002395 PF00588 SpoU rRNA Methylase family XSP_002396 PF00459 Inositol monophosphatase family XSP_002397 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XSP_002397 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XSP_002398 PF00545 ribonuclease XSP_002400 PF12848 ABC transporter XSP_002400 PF16326 ABC transporter C-terminal domain XSP_002400 PF00005 ABC transporter XSP_002401 PF03880 DbpA RNA binding domain XSP_002401 PF00270 DEAD/DEAH box helicase XSP_002401 PF00271 Helicase conserved C-terminal domain XSP_002402 PF00156 Phosphoribosyl transferase domain XSP_002403 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XSP_002404 PF07859 alpha/beta hydrolase fold XSP_002405 PF14497 Glutathione S-transferase, C-terminal domain XSP_002405 PF02798 Glutathione S-transferase, N-terminal domain XSP_002406 PF00313 'Cold-shock' DNA-binding domain XSP_002407 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 XSP_002408 PF07152 YaeQ protein XSP_002410 PF00072 Response regulator receiver domain XSP_002410 PF00563 EAL domain XSP_002410 PF00990 Diguanylate cyclase, GGDEF domain XSP_002411 PF01435 Peptidase family M48 XSP_002412 PF00749 tRNA synthetases class I (E and Q), catalytic domain XSP_002413 PF00106 short chain dehydrogenase XSP_002414 PF05233 PHB accumulation regulatory domain XSP_002414 PF07879 PHB/PHA accumulation regulator DNA-binding domain XSP_002417 PF08676 MutL C terminal dimerisation domain XSP_002417 PF01119 DNA mismatch repair protein, C-terminal domain XSP_002418 PF01520 N-acetylmuramoyl-L-alanine amidase XSP_002418 PF11741 AMIN domain XSP_002420 PF03853 YjeF-related protein N-terminus XSP_002420 PF01256 Carbohydrate kinase XSP_002421 PF08331 Domain of unknown function (DUF1730) XSP_002422 PF02601 Exonuclease VII, large subunit XSP_002422 PF13742 OB-fold nucleic acid binding domain XSP_002424 PF03781 Sulfatase-modifying factor enzyme 1 XSP_002425 PF00570 HRDC domain XSP_002425 PF01612 3'-5' exonuclease XSP_002429 PF00990 Diguanylate cyclase, GGDEF domain XSP_002429 PF07694 5TMR of 5TMR-LYT XSP_002430 PF01584 CheW-like domain XSP_002431 PF00672 HAMP domain XSP_002431 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002431 PF02203 Tar ligand binding domain homologue XSP_002432 PF02245 Methylpurine-DNA glycosylase (MPG) XSP_002433 PF08494 DEAD/H associated XSP_002433 PF00270 DEAD/DEAH box helicase XSP_002433 PF00271 Helicase conserved C-terminal domain XSP_002435 PF04386 Stringent starvation protein B XSP_002436 PF02798 Glutathione S-transferase, N-terminal domain XSP_002436 PF00043 Glutathione S-transferase, C-terminal domain XSP_002437 PF02167 Cytochrome C1 family XSP_002438 PF00032 Cytochrome b(C-terminal)/b6/petD XSP_002438 PF00033 Cytochrome b/b6/petB XSP_002439 PF00355 Rieske [2Fe-2S] domain XSP_002439 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XSP_002440 PF01464 Transglycosylase SLT domain XSP_002443 PF00919 Uncharacterized protein family UPF0004 XSP_002443 PF04055 Radical SAM superfamily XSP_002443 PF01938 TRAM domain XSP_002445 PF02562 PhoH-like protein XSP_002447 PF02130 Uncharacterized protein family UPF0054 XSP_002449 PF03471 Transporter associated domain XSP_002449 PF00571 CBS domain XSP_002452 PF00171 Aldehyde dehydrogenase family XSP_002454 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002455 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002456 PF00005 ABC transporter XSP_002456 PF08402 TOBE domain XSP_002457 PF02321 Outer membrane efflux protein XSP_002458 PF07690 Major Facilitator Superfamily XSP_002459 PF13533 Biotin-lipoyl like XSP_002460 PF13416 Bacterial extracellular solute-binding protein XSP_002461 PF00202 Aminotransferase class-III XSP_002462 PF00120 Glutamine synthetase, catalytic domain XSP_002463 PF07722 Peptidase C26 XSP_002464 PF00120 Glutamine synthetase, catalytic domain XSP_002465 PF01266 FAD dependent oxidoreductase XSP_002466 PF00072 Response regulator receiver domain XSP_002466 PF00990 Diguanylate cyclase, GGDEF domain XSP_002467 PF07690 Major Facilitator Superfamily XSP_002467 PF00083 Sugar (and other) transporter XSP_002469 PF00384 Molybdopterin oxidoreductase XSP_002470 PF02634 FdhD/NarQ family XSP_002471 PF07690 Major Facilitator Superfamily XSP_002472 PF00202 Aminotransferase class-III XSP_002474 PF04286 Protein of unknown function (DUF445) XSP_002475 PF00672 HAMP domain XSP_002475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_002475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002475 PF00512 His Kinase A (phospho-acceptor) domain XSP_002475 PF01627 Hpt domain XSP_002475 PF00072 Response regulator receiver domain XSP_002476 PF00072 Response regulator receiver domain XSP_002477 PF07690 Major Facilitator Superfamily XSP_002478 PF00440 Bacterial regulatory proteins, tetR family XSP_002479 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_002480 PF00106 short chain dehydrogenase XSP_002481 PF00698 Acyl transferase domain XSP_002481 PF14765 Polyketide synthase dehydratase XSP_002481 PF00550 Phosphopantetheine attachment site XSP_002481 PF08659 KR domain XSP_002481 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_002481 PF16197 Ketoacyl-synthetase C-terminal extension XSP_002481 PF08240 Alcohol dehydrogenase GroES-like domain XSP_002481 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_002482 PF05088 Bacterial NAD-glutamate dehydrogenase XSP_002484 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_002484 PF00529 HlyD membrane-fusion protein of T1SS XSP_002485 PF00873 AcrB/AcrD/AcrF family XSP_002486 PF00356 Bacterial regulatory proteins, lacI family XSP_002487 PF00391 PEP-utilising enzyme, mobile domain XSP_002487 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XSP_002487 PF00381 PTS HPr component phosphorylation site XSP_002487 PF02896 PEP-utilising enzyme, TIM barrel domain XSP_002487 PF05524 PEP-utilising enzyme, N-terminal XSP_002488 PF00294 pfkB family carbohydrate kinase XSP_002489 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XSP_002497 PF07549 SecD/SecF GG Motif XSP_002497 PF02355 Protein export membrane protein XSP_002498 PF13721 SecD export protein N-terminal TM region XSP_002498 PF07549 SecD/SecF GG Motif XSP_002498 PF02355 Protein export membrane protein XSP_002499 PF02699 Preprotein translocase subunit XSP_002500 PF01702 Queuine tRNA-ribosyltransferase XSP_002501 PF02547 Queuosine biosynthesis protein XSP_002509 PF02927 Cellulase N-terminal ig-like domain XSP_002509 PF00759 Glycosyl hydrolase family 9 XSP_002511 PF00037 4Fe-4S binding domain XSP_002513 PF01467 Cytidylyltransferase-like XSP_002515 PF00183 Hsp90 protein XSP_002515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002517 PF00593 TonB dependent receptor XSP_002517 PF07715 TonB-dependent Receptor Plug Domain XSP_002518 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_002518 PF00326 Prolyl oligopeptidase family XSP_002524 PF13520 Amino acid permease XSP_002527 PF00557 Metallopeptidase family M24 XSP_002527 PF01321 Creatinase/Prolidase N-terminal domain XSP_002528 PF00171 Aldehyde dehydrogenase family XSP_002529 PF00701 Dihydrodipicolinate synthetase family XSP_002530 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002530 PF04324 BFD-like [2Fe-2S] binding domain XSP_002532 PF01266 FAD dependent oxidoreductase XSP_002533 PF05544 Proline racemase XSP_002535 PF00448 SRP54-type protein, GTPase domain XSP_002535 PF02881 SRP54-type protein, helical bundle domain XSP_002537 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_002537 PF10576 Iron-sulfur binding domain of endonuclease III XSP_002537 PF00633 Helix-hairpin-helix motif XSP_002537 PF14815 NUDIX domain XSP_002538 PF04362 Bacterial Fe(2+) trafficking XSP_002539 PF13426 PAS domain XSP_002539 PF00072 Response regulator receiver domain XSP_002539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002540 PF13649 Methyltransferase domain XSP_002544 PF08212 Lipocalin-like domain XSP_002546 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_002546 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_002546 PF12806 Acetyl-CoA dehydrogenase C-terminal like XSP_002546 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_002548 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XSP_002548 PF02779 Transketolase, pyrimidine binding domain XSP_002548 PF02780 Transketolase, C-terminal domain XSP_002552 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XSP_002553 PF16123 Hydroxyacylglutathione hydrolase C-terminus XSP_002553 PF00753 Metallo-beta-lactamase superfamily XSP_002554 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_002554 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_002557 PF03808 Glycosyl transferase WecB/TagA/CpsF family XSP_002560 PF14667 Polysaccharide biosynthesis C-terminal domain XSP_002562 PF13439 Glycosyltransferase Family 4 XSP_002562 PF00534 Glycosyl transferases group 1 XSP_002566 PF02397 Bacterial sugar transferase XSP_002570 PF13411 MerR HTH family regulatory protein XSP_002571 PF00216 Bacterial DNA-binding protein XSP_002572 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XSP_002572 PF01588 Putative tRNA binding domain XSP_002572 PF03147 Ferredoxin-fold anticodon binding domain XSP_002572 PF03484 tRNA synthetase B5 domain XSP_002572 PF03483 B3/4 domain XSP_002573 PF01409 tRNA synthetases class II core domain (F) XSP_002573 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XSP_002574 PF00453 Ribosomal protein L20 XSP_002575 PF01632 Ribosomal protein L35 XSP_002576 PF00707 Translation initiation factor IF-3, C-terminal domain XSP_002576 PF05198 Translation initiation factor IF-3, N-terminal domain XSP_002577 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XSP_002577 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XSP_002577 PF03129 Anticodon binding domain XSP_002577 PF02824 TGS domain XSP_002578 PF00356 Bacterial regulatory proteins, lacI family XSP_002579 PF00686 Starch binding domain XSP_002579 PF00128 Alpha amylase, catalytic domain XSP_002582 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XSP_002582 PF10566 Glycoside hydrolase 97 XSP_002582 PF14508 Glycosyl-hydrolase 97 N-terminal XSP_002584 PF00128 Alpha amylase, catalytic domain XSP_002585 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XSP_002586 PF05101 Type IV secretory pathway, VirB3-like protein XSP_002588 PF01464 Transglycosylase SLT domain XSP_002589 PF00437 Type II/IV secretion system protein XSP_002590 PF03743 Bacterial conjugation TrbI-like protein XSP_002594 PF02534 Type IV secretory system Conjugative DNA transfer XSP_002597 PF12344 Ultra-violet resistance protein B XSP_002597 PF00271 Helicase conserved C-terminal domain XSP_002597 PF02151 UvrB/uvrC motif XSP_002597 PF04851 Type III restriction enzyme, res subunit XSP_002597 PF17757 UvrB interaction domain XSP_002598 PF00114 Pilin (bacterial filament) XSP_002598 PF07963 Prokaryotic N-terminal methylation motif XSP_002600 PF07963 Prokaryotic N-terminal methylation motif XSP_002600 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor XSP_002601 PF05567 Neisseria PilC beta-propeller domain XSP_002606 PF11892 Domain of unknown function (DUF3412) XSP_002606 PF03641 Possible lysine decarboxylase XSP_002606 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XSP_002607 PF00593 TonB dependent receptor XSP_002608 PF01914 MarC family integral membrane protein XSP_002610 PF00462 Glutaredoxin XSP_002611 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XSP_002611 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XSP_002612 PF02222 ATP-grasp domain XSP_002612 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XSP_002613 PF00731 AIR carboxylase XSP_002615 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XSP_002615 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XSP_002617 PF01138 3' exoribonuclease family, domain 1 XSP_002617 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XSP_002617 PF00575 S1 RNA binding domain XSP_002617 PF00013 KH domain XSP_002617 PF03725 3' exoribonuclease family, domain 2 XSP_002618 PF00312 Ribosomal protein S15 XSP_002619 PF09157 Pseudouridine synthase II TruB, C-terminal XSP_002619 PF01509 TruB family pseudouridylate synthase (N terminal domain) XSP_002619 PF16198 tRNA pseudouridylate synthase B C-terminal domain XSP_002620 PF02033 Ribosome-binding factor A XSP_002621 PF00009 Elongation factor Tu GTP binding domain XSP_002621 PF11987 Translation-initiation factor 2 XSP_002621 PF04760 Translation initiation factor IF-2, N-terminal region XSP_002621 PF08364 Bacterial translation initiation factor IF-2 associated region XSP_002622 PF08529 NusA N-terminal domain XSP_002622 PF13184 NusA-like KH domain XSP_002622 PF00575 S1 RNA binding domain XSP_002623 PF02576 RimP N-terminal domain XSP_002623 PF17384 RimP C-terminal SH3 domain XSP_002625 PF00361 Proton-conducting membrane transporter XSP_002626 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XSP_002626 PF00361 Proton-conducting membrane transporter XSP_002627 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XSP_002627 PF00361 Proton-conducting membrane transporter XSP_002628 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XSP_002629 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XSP_002630 PF12838 4Fe-4S dicluster domain XSP_002631 PF00146 NADH dehydrogenase XSP_002632 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XSP_002632 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XSP_002632 PF00384 Molybdopterin oxidoreductase XSP_002633 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XSP_002633 PF10531 SLBB domain XSP_002633 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XSP_002635 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XSP_002636 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XSP_002637 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XSP_002638 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XSP_002641 PF00121 Triosephosphate isomerase XSP_002642 PF00106 short chain dehydrogenase XSP_002645 PF00563 EAL domain XSP_002645 PF00990 Diguanylate cyclase, GGDEF domain XSP_002645 PF03707 Bacterial signalling protein N terminal repeat XSP_002648 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XSP_002648 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XSP_002648 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XSP_002648 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XSP_002649 PF17848 Acetyl-coA carboxylase zinc finger domain XSP_002649 PF01039 Carboxyl transferase domain XSP_002650 PF00290 Tryptophan synthase alpha chain XSP_002652 PF00291 Pyridoxal-phosphate dependent enzyme XSP_002653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002653 PF03466 LysR substrate binding domain XSP_002654 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XSP_002655 PF01416 tRNA pseudouridine synthase XSP_002658 PF02774 Semialdehyde dehydrogenase, dimerisation domain XSP_002658 PF01118 Semialdehyde dehydrogenase, NAD binding domain XSP_002659 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_002659 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_002660 PF01264 Chorismate synthase XSP_002662 PF05175 Methyltransferase small domain XSP_002663 PF02630 SCO1/SenC XSP_002664 PF02666 Phosphatidylserine decarboxylase XSP_002666 PF05872 Bacterial protein of unknown function (DUF853) XSP_002668 PF00293 NUDIX domain XSP_002671 PF01272 Transcription elongation factor, GreA/GreB, C-term XSP_002671 PF03449 Transcription elongation factor, N-terminal XSP_002672 PF18693 TRAM domain XSP_002672 PF00919 Uncharacterized protein family UPF0004 XSP_002672 PF04055 Radical SAM superfamily XSP_002673 PF01381 Helix-turn-helix XSP_002675 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XSP_002681 PF01738 Dienelactone hydrolase family XSP_002685 PF00692 dUTPase XSP_002686 PF10609 NUBPL iron-transfer P-loop NTPase XSP_002687 PF00593 TonB dependent receptor XSP_002687 PF07715 TonB-dependent Receptor Plug Domain XSP_002689 PF01431 Peptidase family M13 XSP_002689 PF05649 Peptidase family M13 XSP_002690 PF05649 Peptidase family M13 XSP_002690 PF01431 Peptidase family M13 XSP_002694 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002694 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XSP_002695 PF01266 FAD dependent oxidoreductase XSP_002696 PF04235 Protein of unknown function (DUF418) XSP_002698 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_002699 PF00877 NlpC/P60 family XSP_002700 PF00877 NlpC/P60 family XSP_002703 PF13649 Methyltransferase domain XSP_002704 PF00375 Sodium:dicarboxylate symporter family XSP_002705 PF00245 Alkaline phosphatase XSP_002706 PF11734 TilS substrate C-terminal domain XSP_002706 PF01171 PP-loop family XSP_002706 PF09179 TilS substrate binding domain XSP_002707 PF02609 Exonuclease VII small subunit XSP_002708 PF00348 Polyprenyl synthetase XSP_002709 PF14521 Lysine-specific metallo-endopeptidase XSP_002711 PF01523 Putative modulator of DNA gyrase XSP_002712 PF04751 Protein of unknown function (DUF615) XSP_002713 PF01523 Putative modulator of DNA gyrase XSP_002715 PF13116 Protein of unknown function XSP_002715 PF13502 AsmA-like C-terminal region XSP_002716 PF00575 S1 RNA binding domain XSP_002716 PF10150 Ribonuclease E/G family XSP_002717 PF02545 Maf-like protein XSP_002718 PF04402 Protein of unknown function (DUF541) XSP_002720 PF02590 Predicted SPOUT methyltransferase XSP_002724 PF01467 Cytidylyltransferase-like XSP_002727 PF08264 Anticodon-binding domain of tRNA XSP_002727 PF13603 Leucyl-tRNA synthetase, Domain 2 XSP_002727 PF00133 tRNA synthetases class I (I, L, M and V) XSP_002729 PF00085 Thioredoxin XSP_002733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002733 PF03466 LysR substrate binding domain XSP_002739 PF00664 ABC transporter transmembrane region XSP_002739 PF00005 ABC transporter XSP_002741 PF00999 Sodium/hydrogen exchanger family XSP_002742 PF00144 Beta-lactamase XSP_002743 PF03737 Aldolase/RraA XSP_002746 PF00990 Diguanylate cyclase, GGDEF domain XSP_002747 PF00849 RNA pseudouridylate synthase XSP_002747 PF01479 S4 domain XSP_002748 PF00563 EAL domain XSP_002748 PF08448 PAS fold XSP_002748 PF00990 Diguanylate cyclase, GGDEF domain XSP_002749 PF00270 DEAD/DEAH box helicase XSP_002749 PF00271 Helicase conserved C-terminal domain XSP_002749 PF03880 DbpA RNA binding domain XSP_002750 PF04545 Sigma-70, region 4 XSP_002750 PF04539 Sigma-70 region 3 XSP_002750 PF04542 Sigma-70 region 2 XSP_002754 PF01494 FAD binding domain XSP_002761 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XSP_002761 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XSP_002763 PF00654 Voltage gated chloride channel XSP_002766 PF00593 TonB dependent receptor XSP_002766 PF07715 TonB-dependent Receptor Plug Domain XSP_002768 PF00248 Aldo/keto reductase family XSP_002769 PF07690 Major Facilitator Superfamily XSP_002770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002770 PF03466 LysR substrate binding domain XSP_002772 PF06719 AraC-type transcriptional regulator N-terminus XSP_002772 PF12833 Helix-turn-helix domain XSP_002774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002774 PF03466 LysR substrate binding domain XSP_002776 PF00440 Bacterial regulatory proteins, tetR family XSP_002776 PF16859 Tetracyclin repressor-like, C-terminal domain XSP_002777 PF02321 Outer membrane efflux protein XSP_002778 PF00873 AcrB/AcrD/AcrF family XSP_002779 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_002779 PF00529 HlyD membrane-fusion protein of T1SS XSP_002781 PF01475 Ferric uptake regulator family XSP_002782 PF00749 tRNA synthetases class I (E and Q), catalytic domain XSP_002784 PF00795 Carbon-nitrogen hydrolase XSP_002787 PF06123 Inner membrane protein CreD XSP_002791 PF00672 HAMP domain XSP_002791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002791 PF00512 His Kinase A (phospho-acceptor) domain XSP_002792 PF00486 Transcriptional regulatory protein, C terminal XSP_002792 PF00072 Response regulator receiver domain XSP_002793 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XSP_002795 PF00271 Helicase conserved C-terminal domain XSP_002795 PF00270 DEAD/DEAH box helicase XSP_002795 PF17757 UvrB interaction domain XSP_002795 PF02559 CarD-like/TRCF domain XSP_002795 PF03461 TRCF domain XSP_002797 PF01627 Hpt domain XSP_002797 PF09078 CheY binding XSP_002797 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_002797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002797 PF01584 CheW-like domain XSP_002798 PF00672 HAMP domain XSP_002798 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002799 PF01584 CheW-like domain XSP_002800 PF00990 Diguanylate cyclase, GGDEF domain XSP_002800 PF00563 EAL domain XSP_002800 PF13426 PAS domain XSP_002801 PF03705 CheR methyltransferase, all-alpha domain XSP_002801 PF01739 CheR methyltransferase, SAM binding domain XSP_002802 PF01339 CheB methylesterase XSP_002802 PF00072 Response regulator receiver domain XSP_002803 PF13091 PLD-like domain XSP_002804 PF05649 Peptidase family M13 XSP_002804 PF01431 Peptidase family M13 XSP_002806 PF00300 Histidine phosphatase superfamily (branch 1) XSP_002807 PF04493 Endonuclease V XSP_002808 PF05726 Pirin C-terminal cupin domain XSP_002808 PF02678 Pirin XSP_002810 PF02678 Pirin XSP_002810 PF05726 Pirin C-terminal cupin domain XSP_002811 PF13722 5TM C-terminal transporter carbon starvation CstA XSP_002811 PF02554 Carbon starvation protein CstA XSP_002812 PF04328 Selenoprotein, putative XSP_002813 PF13419 Haloacid dehalogenase-like hydrolase XSP_002818 PF12804 MobA-like NTP transferase domain XSP_002819 PF13478 XdhC Rossmann domain XSP_002819 PF02625 XdhC and CoxI family XSP_002820 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XSP_002820 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XSP_002821 PF03450 CO dehydrogenase flavoprotein C-terminal domain XSP_002821 PF00941 FAD binding domain in molybdopterin dehydrogenase XSP_002822 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_002822 PF01799 [2Fe-2S] binding domain XSP_002822 PF10518 TAT (twin-arginine translocation) pathway signal sequence XSP_002823 PF00698 Acyl transferase domain XSP_002823 PF08240 Alcohol dehydrogenase GroES-like domain XSP_002823 PF08990 Erythronolide synthase docking XSP_002823 PF00550 Phosphopantetheine attachment site XSP_002823 PF16197 Ketoacyl-synthetase C-terminal extension XSP_002823 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_002823 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_002823 PF14765 Polyketide synthase dehydratase XSP_002823 PF08659 KR domain XSP_002823 PF09277 Erythronolide synthase, docking XSP_002824 PF00563 EAL domain XSP_002824 PF01590 GAF domain XSP_002824 PF00990 Diguanylate cyclase, GGDEF domain XSP_002824 PF00360 Phytochrome region XSP_002825 PF00436 Single-strand binding protein family XSP_002826 PF00348 Polyprenyl synthetase XSP_002828 PF08245 Mur ligase middle domain XSP_002828 PF02875 Mur ligase family, glutamate ligase domain XSP_002831 PF00696 Amino acid kinase family XSP_002831 PF01842 ACT domain XSP_002832 PF02567 Phenazine biosynthesis-like protein XSP_002833 PF02567 Phenazine biosynthesis-like protein XSP_002835 PF02566 OsmC-like protein XSP_002836 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XSP_002836 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XSP_002837 PF03652 Holliday junction resolvase XSP_002838 PF02622 Uncharacterized ACR, COG1678 XSP_002839 PF00117 Glutamine amidotransferase class-I XSP_002839 PF03352 Methyladenine glycosylase XSP_002839 PF00958 GMP synthase C terminal domain XSP_002839 PF13302 Acetyltransferase (GNAT) domain XSP_002839 PF13673 Acetyltransferase (GNAT) domain XSP_002843 PF00437 Type II/IV secretion system protein XSP_002844 PF00437 Type II/IV secretion system protein XSP_002845 PF01168 Alanine racemase, N-terminal domain XSP_002846 PF14748 Pyrroline-5-carboxylate reductase dimerisation XSP_002846 PF03807 NADP oxidoreductase coenzyme F420-dependent XSP_002848 PF01476 LysM domain XSP_002848 PF01551 Peptidase family M23 XSP_002852 PF01965 DJ-1/PfpI family XSP_002854 PF02082 Transcriptional regulator XSP_002855 PF01458 Uncharacterized protein family (UPF0051) XSP_002856 PF00005 ABC transporter XSP_002857 PF01458 Uncharacterized protein family (UPF0051) XSP_002858 PF00266 Aminotransferase class-V XSP_002860 PF00355 Rieske [2Fe-2S] domain XSP_002861 PF07715 TonB-dependent Receptor Plug Domain XSP_002861 PF00593 TonB dependent receptor XSP_002862 PF13640 2OG-Fe(II) oxygenase superfamily XSP_002862 PF18331 PKHD-type hydroxylase C-terminal domain XSP_002867 PF02424 ApbE family XSP_002868 PF00175 Oxidoreductase NAD-binding domain XSP_002868 PF00667 FAD binding domain XSP_002868 PF00258 Flavodoxin XSP_002871 PF07687 Peptidase dimerisation domain XSP_002871 PF01546 Peptidase family M20/M25/M40 XSP_002873 PF01636 Phosphotransferase enzyme family XSP_002874 PF00483 Nucleotidyl transferase XSP_002875 PF00308 Bacterial dnaA protein XSP_002876 PF01594 AI-2E family transporter XSP_002878 PF00586 AIR synthase related protein, N-terminal domain XSP_002878 PF02769 AIR synthase related protein, C-terminal domain XSP_002880 PF00551 Formyl transferase XSP_002884 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XSP_002885 PF01722 BolA-like protein XSP_002886 PF01380 SIS domain XSP_002886 PF00571 CBS domain XSP_002889 PF03968 OstA-like protein XSP_002890 PF00005 ABC transporter XSP_002891 PF04552 Sigma-54, DNA binding domain XSP_002891 PF04963 Sigma-54 factor, core binding domain XSP_002891 PF00309 Sigma-54 factor, Activator interacting domain (AID) XSP_002892 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XSP_002893 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XSP_002894 PF02603 HPr Serine kinase N terminus XSP_002894 PF07475 HPr Serine kinase C-terminal domain XSP_002895 PF03668 P-loop ATPase protein family XSP_002897 PF00381 PTS HPr component phosphorylation site XSP_002898 PF05524 PEP-utilising enzyme, N-terminal XSP_002898 PF00391 PEP-utilising enzyme, mobile domain XSP_002898 PF02896 PEP-utilising enzyme, TIM barrel domain XSP_002899 PF03448 MgtE intracellular N domain XSP_002899 PF00571 CBS domain XSP_002899 PF01769 Divalent cation transporter XSP_002900 PF00756 Putative esterase XSP_002901 PF02322 Cytochrome bd terminal oxidase subunit II XSP_002902 PF01654 Cytochrome bd terminal oxidase subunit I XSP_002903 PF00324 Amino acid permease XSP_002904 PF00544 Pectate lyase XSP_002905 PF00561 alpha/beta hydrolase fold XSP_002906 PF00196 Bacterial regulatory proteins, luxR family XSP_002907 PF00324 Amino acid permease XSP_002910 PF12706 Beta-lactamase superfamily domain XSP_002911 PF04820 Tryptophan halogenase XSP_002916 PF00376 MerR family regulatory protein XSP_002916 PF09278 MerR, DNA binding XSP_002917 PF07690 Major Facilitator Superfamily XSP_002918 PF03738 Glutathionylspermidine synthase preATP-grasp XSP_002923 PF04012 PspA/IM30 family XSP_002925 PF00583 Acetyltransferase (GNAT) family XSP_002926 PF01243 Pyridoxamine 5'-phosphate oxidase XSP_002926 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XSP_002927 PF01202 Shikimate kinase XSP_002928 PF01761 3-dehydroquinate synthase XSP_002930 PF01208 Uroporphyrinogen decarboxylase (URO-D) XSP_002944 PF01590 GAF domain XSP_002944 PF02954 Bacterial regulatory protein, Fis family XSP_002944 PF00158 Sigma-54 interaction domain XSP_002945 PF07690 Major Facilitator Superfamily XSP_002946 PF00072 Response regulator receiver domain XSP_002946 PF01627 Hpt domain XSP_002946 PF00512 His Kinase A (phospho-acceptor) domain XSP_002946 PF17149 Periplasmic sensor domain found in signal transduction proteins XSP_002946 PF00672 HAMP domain XSP_002946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002947 PF00072 Response regulator receiver domain XSP_002947 PF01627 Hpt domain XSP_002947 PF00512 His Kinase A (phospho-acceptor) domain XSP_002947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002947 PF00672 HAMP domain XSP_002947 PF17149 Periplasmic sensor domain found in signal transduction proteins XSP_002948 PF04264 YceI-like domain XSP_002949 PF01292 Prokaryotic cytochrome b561 XSP_002952 PF03315 Serine dehydratase beta chain XSP_002952 PF03313 Serine dehydratase alpha chain XSP_002953 PF12697 Alpha/beta hydrolase family XSP_002954 PF03447 Homoserine dehydrogenase, NAD binding domain XSP_002954 PF00696 Amino acid kinase family XSP_002954 PF00742 Homoserine dehydrogenase XSP_002955 PF01053 Cys/Met metabolism PLP-dependent enzyme XSP_002956 PF00561 alpha/beta hydrolase fold XSP_002957 PF01476 LysM domain XSP_002957 PF08525 Opacity-associated protein A N-terminal motif XSP_002957 PF01551 Peptidase family M23 XSP_002958 PF16658 Class II release factor RF3, C-terminal domain XSP_002958 PF00009 Elongation factor Tu GTP binding domain XSP_002959 PF03006 Haemolysin-III related XSP_002960 PF05170 AsmA family XSP_002961 PF00478 IMP dehydrogenase / GMP reductase domain XSP_002961 PF00571 CBS domain XSP_002962 PF00535 Glycosyl transferase family 2 XSP_002963 PF00912 Transglycosylase XSP_002964 PF01430 Hsp33 protein XSP_002966 PF07715 TonB-dependent Receptor Plug Domain XSP_002966 PF00593 TonB dependent receptor XSP_002967 PF00440 Bacterial regulatory proteins, tetR family XSP_002969 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_002969 PF09317 Domain of unknown function (DUF1974) XSP_002969 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_002975 PF01597 Glycine cleavage H-protein XSP_002976 PF01571 Aminomethyltransferase folate-binding domain XSP_002976 PF08669 Glycine cleavage T-protein C-terminal barrel domain XSP_002977 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XSP_002979 PF00459 Inositol monophosphatase family XSP_002980 PF00293 NUDIX domain XSP_002981 PF00202 Aminotransferase class-III XSP_002982 PF04452 RNA methyltransferase XSP_002983 PF02685 Glucokinase XSP_002986 PF01476 LysM domain XSP_002986 PF00704 Glycosyl hydrolases family 18 XSP_002987 PF00728 Glycosyl hydrolase family 20, catalytic domain XSP_002987 PF02838 Glycosyl hydrolase family 20, domain 2 XSP_002987 PF07691 PA14 domain XSP_002989 PF14310 Fibronectin type III-like domain XSP_002989 PF07691 PA14 domain XSP_002989 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_002989 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_002991 PF17678 Glycosyl hydrolase family 92 N-terminal domain XSP_002991 PF07971 Glycosyl hydrolase family 92 XSP_002992 PF01301 Glycosyl hydrolases family 35 XSP_002996 PF03932 CutC family XSP_002997 PF01112 Asparaginase XSP_002998 PF13302 Acetyltransferase (GNAT) domain XSP_003000 PF00072 Response regulator receiver domain XSP_003000 PF01339 CheB methylesterase XSP_003001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003001 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_003001 PF01584 CheW-like domain XSP_003001 PF01627 Hpt domain XSP_003001 PF00072 Response regulator receiver domain XSP_003002 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XSP_003002 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003003 PF01584 CheW-like domain XSP_003004 PF00072 Response regulator receiver domain XSP_003005 PF00072 Response regulator receiver domain XSP_003006 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XSP_003006 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XSP_003008 PF03747 ADP-ribosylglycohydrolase XSP_003009 PF00814 Glycoprotease family XSP_003010 PF13307 Helicase C-terminal domain XSP_003010 PF04851 Type III restriction enzyme, res subunit XSP_003012 PF14814 Bifunctional transglycosylase second domain XSP_003012 PF00905 Penicillin binding protein transpeptidase domain XSP_003012 PF00912 Transglycosylase XSP_003013 PF00535 Glycosyl transferase family 2 XSP_003015 PF02824 TGS domain XSP_003015 PF13291 ACT domain XSP_003015 PF04607 Region found in RelA / SpoT proteins XSP_003017 PF08042 PqqA family XSP_003018 PF12706 Beta-lactamase superfamily domain XSP_003019 PF03070 TENA/THI-4/PQQC family XSP_003020 PF04055 Radical SAM superfamily XSP_003020 PF13186 Iron-sulfur cluster-binding domain XSP_003023 PF02685 Glucokinase XSP_003026 PF00271 Helicase conserved C-terminal domain XSP_003026 PF04408 Helicase associated domain (HA2) XSP_003026 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XSP_003026 PF00270 DEAD/DEAH box helicase XSP_003026 PF11898 Domain of unknown function (DUF3418) XSP_003027 PF00210 Ferritin-like domain XSP_003028 PF09382 RQC domain XSP_003028 PF16124 RecQ zinc-binding XSP_003028 PF00570 HRDC domain XSP_003028 PF00270 DEAD/DEAH box helicase XSP_003028 PF00271 Helicase conserved C-terminal domain XSP_003032 PF01479 S4 domain XSP_003032 PF00849 RNA pseudouridylate synthase XSP_003034 PF00672 HAMP domain XSP_003034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003036 PF01810 LysE type translocator XSP_003037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003037 PF03466 LysR substrate binding domain XSP_003038 PF06508 Queuosine biosynthesis protein QueC XSP_003042 PF00248 Aldo/keto reductase family XSP_003043 PF04055 Radical SAM superfamily XSP_003045 PF00691 OmpA family XSP_003046 PF07676 WD40-like Beta Propeller Repeat XSP_003046 PF04052 TolB amino-terminal domain XSP_003048 PF02472 Biopolymer transport protein ExbD/TolR XSP_003049 PF01618 MotA/TolQ/ExbB proton channel family XSP_003050 PF03061 Thioesterase superfamily XSP_003051 PF17864 RuvB AAA lid domain XSP_003051 PF05496 Holliday junction DNA helicase RuvB P-loop domain XSP_003051 PF05491 RuvB C-terminal winged helix domain XSP_003052 PF02705 K+ potassium transporter XSP_003053 PF01330 RuvA N terminal domain XSP_003053 PF07499 RuvA, C-terminal domain XSP_003054 PF02075 Crossover junction endodeoxyribonuclease RuvC XSP_003055 PF01709 Transcriptional regulator XSP_003058 PF02938 GAD domain XSP_003058 PF01336 OB-fold nucleic acid binding domain XSP_003058 PF00152 tRNA synthetases class II (D, K and N) XSP_003061 PF07690 Major Facilitator Superfamily XSP_003063 PF05506 Domain of unknown function (DUF756) XSP_003063 PF04185 Phosphoesterase family XSP_003065 PF03466 LysR substrate binding domain XSP_003065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003066 PF00005 ABC transporter XSP_003066 PF12848 ABC transporter XSP_003067 PF07715 TonB-dependent Receptor Plug Domain XSP_003067 PF00593 TonB dependent receptor XSP_003069 PF07715 TonB-dependent Receptor Plug Domain XSP_003069 PF00593 TonB dependent receptor XSP_003070 PF07715 TonB-dependent Receptor Plug Domain XSP_003070 PF00593 TonB dependent receptor XSP_003071 PF00067 Cytochrome P450 XSP_003072 PF00999 Sodium/hydrogen exchanger family XSP_003072 PF02254 TrkA-N domain XSP_003074 PF00593 TonB dependent receptor XSP_003074 PF07715 TonB-dependent Receptor Plug Domain XSP_003074 PF07660 Secretin and TonB N terminus short domain XSP_003075 PF02655 ATP-grasp domain XSP_003075 PF00206 Lyase XSP_003076 PF06276 Ferric iron reductase FhuF-like transporter XSP_003076 PF04183 IucA / IucC family XSP_003077 PF07690 Major Facilitator Superfamily XSP_003078 PF04183 IucA / IucC family XSP_003078 PF06276 Ferric iron reductase FhuF-like transporter XSP_003079 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XSP_003079 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XSP_003082 PF02277 Phosphoribosyltransferase XSP_003084 PF00593 TonB dependent receptor XSP_003084 PF07715 TonB-dependent Receptor Plug Domain XSP_003085 PF01053 Cys/Met metabolism PLP-dependent enzyme XSP_003087 PF17871 AAA lid domain XSP_003087 PF07724 AAA domain (Cdc48 subfamily) XSP_003087 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_003087 PF02861 Clp amino terminal domain, pathogenicity island component XSP_003087 PF00004 ATPase family associated with various cellular activities (AAA) XSP_003088 PF00005 ABC transporter XSP_003089 PF00528 Binding-protein-dependent transport system inner membrane component XSP_003090 PF09084 NMT1/THI5 like XSP_003091 PF00248 Aldo/keto reductase family XSP_003092 PF00296 Luciferase-like monooxygenase XSP_003093 PF07715 TonB-dependent Receptor Plug Domain XSP_003093 PF00593 TonB dependent receptor XSP_003094 PF01541 GIY-YIG catalytic domain XSP_003102 PF07715 TonB-dependent Receptor Plug Domain XSP_003102 PF00593 TonB dependent receptor XSP_003103 PF02358 Trehalose-phosphatase XSP_003104 PF00723 Glycosyl hydrolases family 15 XSP_003105 PF00982 Glycosyltransferase family 20 XSP_003106 PF01011 PQQ enzyme repeat XSP_003107 PF02203 Tar ligand binding domain homologue XSP_003107 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003107 PF00672 HAMP domain XSP_003108 PF02578 Multi-copper polyphenol oxidoreductase laccase XSP_003109 PF00849 RNA pseudouridylate synthase XSP_003110 PF13525 Outer membrane lipoprotein XSP_003112 PF00795 Carbon-nitrogen hydrolase XSP_003112 PF02540 NAD synthase XSP_003114 PF02629 CoA binding domain XSP_003114 PF00549 CoA-ligase XSP_003115 PF00549 CoA-ligase XSP_003115 PF08442 ATP-grasp domain XSP_003116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003116 PF00512 His Kinase A (phospho-acceptor) domain XSP_003117 PF02954 Bacterial regulatory protein, Fis family XSP_003117 PF00072 Response regulator receiver domain XSP_003117 PF00158 Sigma-54 interaction domain XSP_003118 PF00437 Type II/IV secretion system protein XSP_003118 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XSP_003119 PF00114 Pilin (bacterial filament) XSP_003119 PF07963 Prokaryotic N-terminal methylation motif XSP_003120 PF00482 Type II secretion system (T2SS), protein F XSP_003121 PF01478 Type IV leader peptidase family XSP_003121 PF06750 Bacterial Peptidase A24 N-terminal domain XSP_003122 PF01121 Dephospho-CoA kinase XSP_003124 PF11808 Phosphate regulon sensor protein PhoR XSP_003124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003124 PF00512 His Kinase A (phospho-acceptor) domain XSP_003124 PF00989 PAS fold XSP_003125 PF00072 Response regulator receiver domain XSP_003125 PF00486 Transcriptional regulatory protein, C terminal XSP_003127 PF08443 RimK-like ATP-grasp domain XSP_003127 PF18030 RimK PreATP-grasp domain XSP_003128 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_003128 PF00128 Alpha amylase, catalytic domain XSP_003132 PF02203 Tar ligand binding domain homologue XSP_003132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003132 PF00672 HAMP domain XSP_003133 PF01161 Phosphatidylethanolamine-binding protein XSP_003135 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XSP_003135 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XSP_003136 PF00939 Sodium:sulfate symporter transmembrane region XSP_003138 PF03797 Autotransporter beta-domain XSP_003138 PF00657 GDSL-like Lipase/Acylhydrolase XSP_003140 PF05690 Thiazole biosynthesis protein ThiG XSP_003141 PF02390 Putative methyltransferase XSP_003142 PF03600 Citrate transporter XSP_003142 PF02080 TrkA-C domain XSP_003145 PF01557 Fumarylacetoacetate (FAA) hydrolase family XSP_003146 PF01741 Large-conductance mechanosensitive channel, MscL XSP_003148 PF00356 Bacterial regulatory proteins, lacI family XSP_003150 PF00703 Glycosyl hydrolases family 2 XSP_003150 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_003150 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XSP_003151 PF10566 Glycoside hydrolase 97 XSP_003151 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XSP_003151 PF14508 Glycosyl-hydrolase 97 N-terminal XSP_003152 PF00135 Carboxylesterase family XSP_003153 PF00588 SpoU rRNA Methylase family XSP_003153 PF08032 RNA 2'-O ribose methyltransferase substrate binding XSP_003156 PF11838 ERAP1-like C-terminal domain XSP_003156 PF01433 Peptidase family M1 domain XSP_003157 PF00873 AcrB/AcrD/AcrF family XSP_003158 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003158 PF00529 HlyD membrane-fusion protein of T1SS XSP_003159 PF00009 Elongation factor Tu GTP binding domain XSP_003160 PF01507 Phosphoadenosine phosphosulfate reductase family XSP_003161 PF00667 FAD binding domain XSP_003161 PF00258 Flavodoxin XSP_003161 PF00175 Oxidoreductase NAD-binding domain XSP_003162 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XSP_003162 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XSP_003163 PF01507 Phosphoadenosine phosphosulfate reductase family XSP_003167 PF00672 HAMP domain XSP_003167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003167 PF01627 Hpt domain XSP_003167 PF00072 Response regulator receiver domain XSP_003167 PF00512 His Kinase A (phospho-acceptor) domain XSP_003169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003169 PF03466 LysR substrate binding domain XSP_003170 PF14824 Sirohaem biosynthesis protein central XSP_003170 PF10414 Sirohaem synthase dimerisation region XSP_003170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_003171 PF00291 Pyridoxal-phosphate dependent enzyme XSP_003172 PF01661 Macro domain XSP_003173 PF00274 Fructose-bisphosphate aldolase class-I XSP_003174 PF00224 Pyruvate kinase, barrel domain XSP_003174 PF02887 Pyruvate kinase, alpha/beta domain XSP_003175 PF13419 Haloacid dehalogenase-like hydrolase XSP_003176 PF00162 Phosphoglycerate kinase XSP_003180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XSP_003180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XSP_003183 PF03922 OmpW family XSP_003185 PF00753 Metallo-beta-lactamase superfamily XSP_003185 PF04273 Putative phosphatase (DUF442) XSP_003187 PF00528 Binding-protein-dependent transport system inner membrane component XSP_003188 PF00005 ABC transporter XSP_003188 PF03459 TOBE domain XSP_003196 PF01476 LysM domain XSP_003196 PF03734 L,D-transpeptidase catalytic domain XSP_003197 PF01551 Peptidase family M23 XSP_003197 PF04225 Opacity-associated protein A LysM-like domain XSP_003199 PF03466 LysR substrate binding domain XSP_003199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003200 PF07715 TonB-dependent Receptor Plug Domain XSP_003200 PF00593 TonB dependent receptor XSP_003201 PF00456 Transketolase, thiamine diphosphate binding domain XSP_003201 PF02780 Transketolase, C-terminal domain XSP_003201 PF02779 Transketolase, pyrimidine binding domain XSP_003202 PF00375 Sodium:dicarboxylate symporter family XSP_003205 PF13519 von Willebrand factor type A domain XSP_003205 PF07584 Aerotolerance regulator N-terminal XSP_003209 PF07726 ATPase family associated with various cellular activities (AAA) XSP_003209 PF17863 AAA lid domain XSP_003210 PF03958 Bacterial type II/III secretion system short domain XSP_003210 PF07660 Secretin and TonB N terminus short domain XSP_003210 PF11741 AMIN domain XSP_003210 PF00263 Bacterial type II and III secretion system protein XSP_003211 PF04351 Pilus assembly protein, PilP XSP_003212 PF04350 Pilus assembly protein, PilO XSP_003213 PF05137 Fimbrial assembly protein (PilN) XSP_003214 PF11104 Type IV pilus assembly protein PilM; XSP_003215 PF17092 Penicillin-binding protein OB-like domain XSP_003215 PF00912 Transglycosylase XSP_003215 PF00905 Penicillin binding protein transpeptidase domain XSP_003217 PF00285 Citrate synthase, C-terminal domain XSP_003218 PF01197 Ribosomal protein L31 XSP_003219 PF01156 Inosine-uridine preferring nucleoside hydrolase XSP_003220 PF17191 RecG wedge domain XSP_003220 PF00271 Helicase conserved C-terminal domain XSP_003220 PF00270 DEAD/DEAH box helicase XSP_003221 PF01042 Endoribonuclease L-PSP XSP_003222 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus XSP_003222 PF08666 SAF domain XSP_003223 PF03573 outer membrane porin, OprD family XSP_003224 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003224 PF13378 Enolase C-terminal domain-like XSP_003225 PF07690 Major Facilitator Superfamily XSP_003226 PF00171 Aldehyde dehydrogenase family XSP_003227 PF00701 Dihydrodipicolinate synthetase family XSP_003229 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003229 PF03466 LysR substrate binding domain XSP_003230 PF02824 TGS domain XSP_003230 PF04607 Region found in RelA / SpoT proteins XSP_003230 PF13291 ACT domain XSP_003231 PF01192 RNA polymerase Rpb6 XSP_003232 PF00625 Guanylate kinase XSP_003233 PF08340 Domain of unknown function (DUF1732) XSP_003233 PF03755 YicC-like family, N-terminal region XSP_003234 PF03725 3' exoribonuclease family, domain 2 XSP_003234 PF01138 3' exoribonuclease family, domain 1 XSP_003236 PF01725 Ham1 family XSP_003237 PF06969 HemN C-terminal domain XSP_003237 PF04055 Radical SAM superfamily XSP_003240 PF00557 Metallopeptidase family M24 XSP_003242 PF05195 Aminopeptidase P, N-terminal domain XSP_003242 PF00557 Metallopeptidase family M24 XSP_003243 PF03695 Uncharacterised protein family (UPF0149) XSP_003245 PF05164 Cell division protein ZapA XSP_003247 PF01812 5-formyltetrahydrofolate cyclo-ligase family XSP_003249 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XSP_003251 PF13369 Transglutaminase-like superfamily XSP_003252 PF00301 Rubredoxin XSP_003253 PF02581 Thiamine monophosphate synthase XSP_003256 PF00202 Aminotransferase class-III XSP_003257 PF17874 MalT-like TPR region XSP_003257 PF00196 Bacterial regulatory proteins, luxR family XSP_003258 PF00127 Copper binding proteins, plastocyanin/azurin family XSP_003259 PF00155 Aminotransferase class I and II XSP_003261 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XSP_003261 PF00034 Cytochrome c XSP_003262 PF01593 Flavin containing amine oxidoreductase XSP_003265 PF00202 Aminotransferase class-III XSP_003266 PF00027 Cyclic nucleotide-binding domain XSP_003266 PF00520 Ion transport protein XSP_003271 PF01569 PAP2 superfamily XSP_003272 PF01062 Bestrophin, RFP-TM, chloride channel XSP_003274 PF01225 Mur ligase family, catalytic domain XSP_003274 PF02875 Mur ligase family, glutamate ligase domain XSP_003274 PF08245 Mur ligase middle domain XSP_003276 PF00365 Phosphofructokinase XSP_003279 PF03030 Inorganic H+ pyrophosphatase XSP_003281 PF00719 Inorganic pyrophosphatase XSP_003283 PF00593 TonB dependent receptor XSP_003283 PF07715 TonB-dependent Receptor Plug Domain XSP_003284 PF12833 Helix-turn-helix domain XSP_003285 PF18500 CadC C-terminal domain 1 XSP_003285 PF00486 Transcriptional regulatory protein, C terminal XSP_003286 PF13667 ThiC-associated domain XSP_003286 PF01964 Radical SAM ThiC family XSP_003287 PF00326 Prolyl oligopeptidase family XSP_003287 PF07676 WD40-like Beta Propeller Repeat XSP_003288 PF00672 HAMP domain XSP_003288 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003290 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XSP_003290 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XSP_003291 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XSP_003291 PF00205 Thiamine pyrophosphate enzyme, central domain XSP_003291 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XSP_003293 PF00291 Pyridoxal-phosphate dependent enzyme XSP_003294 PF08502 LeuA allosteric (dimerisation) domain XSP_003294 PF00682 HMGL-like XSP_003295 PF00180 Isocitrate/isopropylmalate dehydrogenase XSP_003296 PF00694 Aconitase C-terminal domain XSP_003297 PF00330 Aconitase family (aconitate hydratase) XSP_003298 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003299 PF00990 Diguanylate cyclase, GGDEF domain XSP_003302 PF02321 Outer membrane efflux protein XSP_003303 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XSP_003304 PF03279 Bacterial lipid A biosynthesis acyltransferase XSP_003309 PF00390 Malic enzyme, N-terminal domain XSP_003309 PF03949 Malic enzyme, NAD binding domain XSP_003309 PF01515 Phosphate acetyl/butaryl transferase XSP_003310 PF00375 Sodium:dicarboxylate symporter family XSP_003312 PF00512 His Kinase A (phospho-acceptor) domain XSP_003312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003314 PF07715 TonB-dependent Receptor Plug Domain XSP_003314 PF00593 TonB dependent receptor XSP_003315 PF00248 Aldo/keto reductase family XSP_003316 PF00196 Bacterial regulatory proteins, luxR family XSP_003316 PF00072 Response regulator receiver domain XSP_003318 PF08521 Two-component sensor kinase N-terminal XSP_003318 PF00512 His Kinase A (phospho-acceptor) domain XSP_003318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003319 PF00072 Response regulator receiver domain XSP_003319 PF00486 Transcriptional regulatory protein, C terminal XSP_003321 PF03600 Citrate transporter XSP_003322 PF00106 short chain dehydrogenase XSP_003323 PF00356 Bacterial regulatory proteins, lacI family XSP_003326 PF00128 Alpha amylase, catalytic domain XSP_003330 PF03193 RsgA GTPase XSP_003331 PF00155 Aminotransferase class I and II XSP_003334 PF00593 TonB dependent receptor XSP_003334 PF07715 TonB-dependent Receptor Plug Domain XSP_003335 PF01522 Polysaccharide deacetylase XSP_003336 PF00462 Glutaredoxin XSP_003339 PF01979 Amidohydrolase family XSP_003340 PF01979 Amidohydrolase family XSP_003345 PF02645 Uncharacterised protein, DegV family COG1307 XSP_003347 PF00586 AIR synthase related protein, N-terminal domain XSP_003347 PF02769 AIR synthase related protein, C-terminal domain XSP_003348 PF01029 NusB family XSP_003349 PF00885 6,7-dimethyl-8-ribityllumazine synthase XSP_003350 PF00925 GTP cyclohydrolase II XSP_003350 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XSP_003351 PF00677 Lumazine binding domain XSP_003353 PF01872 RibD C-terminal domain XSP_003353 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XSP_003355 PF03477 ATP cone domain XSP_003356 PF00464 Serine hydroxymethyltransferase XSP_003358 PF00005 ABC transporter XSP_003358 PF12848 ABC transporter XSP_003359 PF01327 Polypeptide deformylase XSP_003360 PF03960 ArsC family XSP_003363 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XSP_003363 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XSP_003370 PF00593 TonB dependent receptor XSP_003370 PF07715 TonB-dependent Receptor Plug Domain XSP_003372 PF07702 UTRA domain XSP_003372 PF00392 Bacterial regulatory proteins, gntR family XSP_003374 PF00263 Bacterial type II and III secretion system protein XSP_003374 PF03958 Bacterial type II/III secretion system short domain XSP_003376 PF10741 Type II secretion system (T2SS), protein M subtype b XSP_003377 PF05137 Fimbrial assembly protein (PilN) XSP_003378 PF03934 Type II secretion system (T2SS), protein K XSP_003380 PF07963 Prokaryotic N-terminal methylation motif XSP_003381 PF12019 Type II transport protein GspH XSP_003382 PF08334 Type II secretion system (T2SS), protein G XSP_003383 PF00482 Type II secretion system (T2SS), protein F XSP_003384 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XSP_003384 PF00437 Type II/IV secretion system protein XSP_003385 PF00082 Subtilase family XSP_003385 PF04151 Bacterial pre-peptidase C-terminal domain XSP_003386 PF03895 YadA-like membrane anchor domain XSP_003386 PF13018 Extended Signal Peptide of Type V secretion system XSP_003386 PF05658 Head domain of trimeric autotransporter adhesin XSP_003386 PF05662 Coiled stalk of trimeric autotransporter adhesin XSP_003387 PF04151 Bacterial pre-peptidase C-terminal domain XSP_003387 PF00082 Subtilase family XSP_003388 PF13018 Extended Signal Peptide of Type V secretion system XSP_003388 PF03895 YadA-like membrane anchor domain XSP_003388 PF05658 Head domain of trimeric autotransporter adhesin XSP_003388 PF05662 Coiled stalk of trimeric autotransporter adhesin XSP_003389 PF02769 AIR synthase related protein, C-terminal domain XSP_003389 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XSP_003389 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XSP_003390 PF13098 Thioredoxin-like domain XSP_003390 PF10411 Disulfide bond isomerase protein N-terminus XSP_003391 PF00589 Phage integrase family XSP_003391 PF02899 Phage integrase, N-terminal SAM-like domain XSP_003393 PF03739 Lipopolysaccharide export system permease LptF/LptG XSP_003395 PF02789 Cytosol aminopeptidase family, N-terminal domain XSP_003395 PF00883 Cytosol aminopeptidase family, catalytic domain XSP_003397 PF08264 Anticodon-binding domain of tRNA XSP_003397 PF00133 tRNA synthetases class I (I, L, M and V) XSP_003397 PF10458 Valyl tRNA synthetase tRNA binding arm XSP_003399 PF00544 Pectate lyase XSP_003402 PF01066 CDP-alcohol phosphatidyltransferase XSP_003404 PF04073 Aminoacyl-tRNA editing domain XSP_003404 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XSP_003404 PF03129 Anticodon binding domain XSP_003407 PF02405 Permease MlaE XSP_003408 PF00005 ABC transporter XSP_003409 PF03886 ABC-type transport auxiliary lipoprotein component XSP_003409 PF02470 MlaD protein XSP_003413 PF14307 Glycosyltransferase WbsX XSP_003413 PF05045 Rhamnan synthesis protein F XSP_003414 PF01144 Coenzyme A transferase XSP_003415 PF01144 Coenzyme A transferase XSP_003416 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XSP_003416 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XSP_003416 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XSP_003416 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XSP_003417 PF01050 Mannose-6-phosphate isomerase XSP_003417 PF00483 Nucleotidyl transferase XSP_003418 PF04321 RmlD substrate binding domain XSP_003419 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XSP_003420 PF00483 Nucleotidyl transferase XSP_003421 PF16363 GDP-mannose 4,6 dehydratase XSP_003422 PF01012 Electron transfer flavoprotein domain XSP_003423 PF01012 Electron transfer flavoprotein domain XSP_003423 PF00766 Electron transfer flavoprotein FAD-binding domain XSP_003424 PF01053 Cys/Met metabolism PLP-dependent enzyme XSP_003425 PF01061 ABC-2 type transporter XSP_003426 PF00005 ABC transporter XSP_003428 PF01757 Acyltransferase family XSP_003431 PF00291 Pyridoxal-phosphate dependent enzyme XSP_003431 PF00571 CBS domain XSP_003435 PF00437 Type II/IV secretion system protein XSP_003436 PF14497 Glutathione S-transferase, C-terminal domain XSP_003436 PF02798 Glutathione S-transferase, N-terminal domain XSP_003439 PF00270 DEAD/DEAH box helicase XSP_003439 PF00271 Helicase conserved C-terminal domain XSP_003441 PF00593 TonB dependent receptor XSP_003441 PF07715 TonB-dependent Receptor Plug Domain XSP_003442 PF01242 6-pyruvoyl tetrahydropterin synthase XSP_003445 PF13185 GAF domain XSP_003447 PF00756 Putative esterase XSP_003448 PF00593 TonB dependent receptor XSP_003448 PF07715 TonB-dependent Receptor Plug Domain XSP_003449 PF13419 Haloacid dehalogenase-like hydrolase XSP_003450 PF11799 impB/mucB/samB family C-terminal domain XSP_003450 PF00817 impB/mucB/samB family XSP_003451 PF07977 FabA-like domain XSP_003452 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003452 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003453 PF01432 Peptidase family M3 XSP_003456 PF07731 Multicopper oxidase XSP_003456 PF07732 Multicopper oxidase XSP_003456 PF00394 Multicopper oxidase XSP_003457 PF05275 Copper resistance protein B precursor (CopB) XSP_003458 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_003460 PF01380 SIS domain XSP_003461 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003462 PF00005 ABC transporter XSP_003463 PF12704 MacB-like periplasmic core domain XSP_003463 PF02687 FtsX-like permease family XSP_003464 PF12704 MacB-like periplasmic core domain XSP_003464 PF00005 ABC transporter XSP_003464 PF02687 FtsX-like permease family XSP_003465 PF00005 ABC transporter XSP_003465 PF02687 FtsX-like permease family XSP_003465 PF12704 MacB-like periplasmic core domain XSP_003466 PF00005 ABC transporter XSP_003466 PF02687 FtsX-like permease family XSP_003466 PF12704 MacB-like periplasmic core domain XSP_003467 PF00072 Response regulator receiver domain XSP_003467 PF00158 Sigma-54 interaction domain XSP_003467 PF02954 Bacterial regulatory protein, Fis family XSP_003468 PF00512 His Kinase A (phospho-acceptor) domain XSP_003468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003470 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_003470 PF14602 Hexapeptide repeat of succinyl-transferase XSP_003470 PF12804 MobA-like NTP transferase domain XSP_003472 PF01817 Chorismate mutase type II XSP_003473 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XSP_003474 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_003474 PF02874 ATP synthase alpha/beta family, beta-barrel domain XSP_003475 PF00231 ATP synthase XSP_003476 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_003476 PF02874 ATP synthase alpha/beta family, beta-barrel domain XSP_003476 PF00306 ATP synthase alpha/beta chain, C terminal domain XSP_003477 PF00213 ATP synthase delta (OSCP) subunit XSP_003478 PF00430 ATP synthase B/B' CF(0) XSP_003479 PF00137 ATP synthase subunit C XSP_003480 PF00119 ATP synthase A chain XSP_003484 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_003484 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XSP_003486 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XSP_003486 PF00364 Biotin-requiring enzyme XSP_003486 PF02817 e3 binding domain XSP_003492 PF03180 NLPA lipoprotein XSP_003493 PF00528 Binding-protein-dependent transport system inner membrane component XSP_003494 PF00005 ABC transporter XSP_003494 PF09383 NIL domain XSP_003495 PF00892 EamA-like transporter family XSP_003496 PF04461 Protein of unknown function (DUF520) XSP_003498 PF09308 LuxQ, periplasmic XSP_003498 PF00512 His Kinase A (phospho-acceptor) domain XSP_003498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003498 PF00072 Response regulator receiver domain XSP_003502 PF00849 RNA pseudouridylate synthase XSP_003502 PF01479 S4 domain XSP_003503 PF08468 Methyltransferase small domain N-terminal XSP_003503 PF05175 Methyltransferase small domain XSP_003505 PF07995 Glucose / Sorbosone dehydrogenase XSP_003507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003507 PF00512 His Kinase A (phospho-acceptor) domain XSP_003511 PF01168 Alanine racemase, N-terminal domain XSP_003511 PF00842 Alanine racemase, C-terminal domain XSP_003512 PF01266 FAD dependent oxidoreductase XSP_003513 PF01037 Lrp/AsnC ligand binding domain XSP_003515 PF01641 SelR domain XSP_003516 PF01618 MotA/TolQ/ExbB proton channel family XSP_003517 PF00691 OmpA family XSP_003517 PF13677 Membrane MotB of proton-channel complex MotA/MotB XSP_003522 PF01061 ABC-2 type transporter XSP_003523 PF00005 ABC transporter XSP_003524 PF00999 Sodium/hydrogen exchanger family XSP_003526 PF02469 Fasciclin domain XSP_003527 PF03167 Uracil DNA glycosylase superfamily XSP_003529 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_003531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003531 PF03466 LysR substrate binding domain XSP_003532 PF03358 NADPH-dependent FMN reductase XSP_003533 PF00248 Aldo/keto reductase family XSP_003535 PF05649 Peptidase family M13 XSP_003535 PF01431 Peptidase family M13 XSP_003538 PF13520 Amino acid permease XSP_003540 PF00072 Response regulator receiver domain XSP_003540 PF04397 LytTr DNA-binding domain XSP_003541 PF00672 HAMP domain XSP_003541 PF06580 Histidine kinase XSP_003541 PF02743 Cache domain XSP_003541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003544 PF05974 Domain of unknown function (DUF892) XSP_003545 PF05067 Manganese containing catalase XSP_003547 PF03705 CheR methyltransferase, all-alpha domain XSP_003547 PF08448 PAS fold XSP_003547 PF01739 CheR methyltransferase, SAM binding domain XSP_003547 PF01339 CheB methylesterase XSP_003550 PF00158 Sigma-54 interaction domain XSP_003550 PF02954 Bacterial regulatory protein, Fis family XSP_003550 PF00072 Response regulator receiver domain XSP_003554 PF00107 Zinc-binding dehydrogenase XSP_003554 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003554 PF13823 Alcohol dehydrogenase GroES-associated XSP_003563 PF00593 TonB dependent receptor XSP_003563 PF07715 TonB-dependent Receptor Plug Domain XSP_003566 PF00005 ABC transporter XSP_003570 PF02203 Tar ligand binding domain homologue XSP_003570 PF00672 HAMP domain XSP_003570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003577 PF01740 STAS domain XSP_003577 PF00916 Sulfate permease family XSP_003578 PF00654 Voltage gated chloride channel XSP_003579 PF00557 Metallopeptidase family M24 XSP_003581 PF07690 Major Facilitator Superfamily XSP_003582 PF00440 Bacterial regulatory proteins, tetR family XSP_003583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003583 PF03466 LysR substrate binding domain XSP_003584 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_003585 PF00440 Bacterial regulatory proteins, tetR family XSP_003585 PF16859 Tetracyclin repressor-like, C-terminal domain XSP_003586 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_003591 PF01047 MarR family XSP_003593 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term XSP_003593 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_003594 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003594 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003594 PF14765 Polyketide synthase dehydratase XSP_003594 PF00550 Phosphopantetheine attachment site XSP_003594 PF08659 KR domain XSP_003594 PF00698 Acyl transferase domain XSP_003594 PF00107 Zinc-binding dehydrogenase XSP_003594 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003594 PF16197 Ketoacyl-synthetase C-terminal extension XSP_003600 PF04546 Sigma-70, non-essential region XSP_003600 PF03979 Sigma-70 factor, region 1.1 XSP_003600 PF00140 Sigma-70 factor, region 1.2 XSP_003600 PF04542 Sigma-70 region 2 XSP_003600 PF04539 Sigma-70 region 3 XSP_003600 PF04545 Sigma-70, region 4 XSP_003601 PF02580 D-Tyr-tRNA(Tyr) deacylase XSP_003603 PF00583 Acetyltransferase (GNAT) family XSP_003604 PF00925 GTP cyclohydrolase II XSP_003608 PF00535 Glycosyl transferase family 2 XSP_003611 PF01189 16S rRNA methyltransferase RsmB/F XSP_003611 PF01029 NusB family XSP_003612 PF02911 Formyl transferase, C-terminal domain XSP_003612 PF00551 Formyl transferase XSP_003613 PF01327 Polypeptide deformylase XSP_003614 PF01476 LysM domain XSP_003615 PF02481 DNA recombination-mediator protein A XSP_003615 PF17782 DprA winged helix domain XSP_003616 PF04361 Protein of unknown function (DUF494) XSP_003617 PF07963 Prokaryotic N-terminal methylation motif XSP_003617 PF00114 Pilin (bacterial filament) XSP_003619 PF13368 Topoisomerase C-terminal repeat XSP_003619 PF01131 DNA topoisomerase XSP_003619 PF01751 Toprim domain XSP_003620 PF01300 Telomere recombination XSP_003625 PF01343 Peptidase family S49 XSP_003626 PF01554 MatE XSP_003629 PF18074 Primosomal protein N C-terminal domain XSP_003629 PF00270 DEAD/DEAH box helicase XSP_003629 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XSP_003629 PF17764 3′ DNA-binding domain (3′BD) XSP_003629 PF00271 Helicase conserved C-terminal domain XSP_003630 PF13417 Glutathione S-transferase, N-terminal domain XSP_003630 PF00043 Glutathione S-transferase, C-terminal domain XSP_003633 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_003634 PF03458 UPF0126 domain XSP_003635 PF04542 Sigma-70 region 2 XSP_003635 PF04545 Sigma-70, region 4 XSP_003636 PF03167 Uracil DNA glycosylase superfamily XSP_003637 PF01339 CheB methylesterase XSP_003637 PF00072 Response regulator receiver domain XSP_003638 PF18075 FtsX extracellular domain XSP_003639 PF00005 ABC transporter XSP_003640 PF12300 ATP-dependent RNA helicase RhlB XSP_003640 PF00271 Helicase conserved C-terminal domain XSP_003640 PF00270 DEAD/DEAH box helicase XSP_003641 PF00085 Thioredoxin XSP_003642 PF07498 Rho termination factor, N-terminal domain XSP_003642 PF07497 Rho termination factor, RNA-binding domain XSP_003642 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_003643 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XSP_003644 PF03971 Monomeric isocitrate dehydrogenase XSP_003646 PF01476 LysM domain XSP_003646 PF00756 Putative esterase XSP_003647 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XSP_003647 PF14489 QueF-like protein XSP_003648 PF07687 Peptidase dimerisation domain XSP_003648 PF01546 Peptidase family M20/M25/M40 XSP_003649 PF13533 Biotin-lipoyl like XSP_003650 PF00873 AcrB/AcrD/AcrF family XSP_003651 PF00873 AcrB/AcrD/AcrF family XSP_003652 PF07063 Domain of unknown function (DUF1338) XSP_003660 PF01427 D-ala-D-ala dipeptidase XSP_003663 PF01510 N-acetylmuramoyl-L-alanine amidase XSP_003665 PF13378 Enolase C-terminal domain-like XSP_003665 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003667 PF13520 Amino acid permease XSP_003670 PF07995 Glucose / Sorbosone dehydrogenase XSP_003671 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_003671 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_003671 PF14310 Fibronectin type III-like domain XSP_003672 PF02152 Dihydroneopterin aldolase XSP_003673 PF00814 Glycoprotease family XSP_003674 PF01165 Ribosomal protein S21 XSP_003675 PF09424 Yqey-like protein XSP_003676 PF03631 Virulence factor BrkB XSP_003677 PF08278 DNA primase DnaG DnaB-binding XSP_003677 PF10410 DnaB-helicase binding domain of primase XSP_003677 PF01807 CHC2 zinc finger XSP_003677 PF08275 DNA primase catalytic core, N-terminal domain XSP_003678 PF13593 SBF-like CPA transporter family (DUF4137) XSP_003680 PF01040 UbiA prenyltransferase family XSP_003685 PF00510 Cytochrome c oxidase subunit III XSP_003686 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XSP_003688 PF00115 Cytochrome C and Quinol oxidase polypeptide I XSP_003689 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XSP_003689 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XSP_003691 PF00171 Aldehyde dehydrogenase family XSP_003691 PF14850 DNA-binding domain of Proline dehydrogenase XSP_003691 PF01619 Proline dehydrogenase XSP_003691 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XSP_003697 PF00579 tRNA synthetases class I (W and Y) XSP_003698 PF04225 Opacity-associated protein A LysM-like domain XSP_003698 PF01551 Peptidase family M23 XSP_003699 PF03702 Anhydro-N-acetylmuramic acid kinase XSP_003701 PF07690 Major Facilitator Superfamily XSP_003702 PF03372 Endonuclease/Exonuclease/phosphatase family XSP_003703 PF00156 Phosphoribosyl transferase domain XSP_003705 PF13614 AAA domain XSP_003706 PF02195 ParB-like nuclease domain XSP_003706 PF17762 HTH domain found in ParB protein XSP_003709 PF01370 NAD dependent epimerase/dehydratase family XSP_003710 PF00535 Glycosyl transferase family 2 XSP_003713 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XSP_003713 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XSP_003713 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XSP_003713 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XSP_003714 PF00692 dUTPase XSP_003715 PF02441 Flavoprotein XSP_003715 PF04127 DNA / pantothenate metabolism flavoprotein XSP_003716 PF04002 RadC-like JAB domain XSP_003717 PF03485 Arginyl tRNA synthetase N terminal domain XSP_003717 PF00750 tRNA synthetases class I (R) XSP_003717 PF05746 DALR anticodon binding domain XSP_003720 PF00106 short chain dehydrogenase XSP_003721 PF01757 Acyltransferase family XSP_003722 PF03033 Glycosyltransferase family 28 N-terminal domain XSP_003723 PF00501 AMP-binding enzyme XSP_003723 PF13193 AMP-binding enzyme C-terminal domain XSP_003723 PF00668 Condensation domain XSP_003723 PF00550 Phosphopantetheine attachment site XSP_003723 PF00975 Thioesterase domain XSP_003725 PF17810 Arginine decarboxylase helical bundle domain XSP_003725 PF17944 Arginine decarboxylase C-terminal helical extension XSP_003725 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XSP_003726 PF17284 Spermidine synthase tetramerisation domain XSP_003730 PF00543 Nitrogen regulatory protein P-II XSP_003731 PF04380 Membrane fusogenic activity XSP_003732 PF01078 Magnesium chelatase, subunit ChlI XSP_003732 PF13335 Magnesium chelatase, subunit ChlI C-terminal XSP_003735 PF12792 CSS motif domain associated with EAL XSP_003735 PF00563 EAL domain XSP_003736 PF00487 Fatty acid desaturase XSP_003737 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_003737 PF00970 Oxidoreductase FAD-binding domain XSP_003737 PF00175 Oxidoreductase NAD-binding domain XSP_003738 PF00440 Bacterial regulatory proteins, tetR family XSP_003746 PF08338 Domain of unknown function (DUF1731) XSP_003746 PF01370 NAD dependent epimerase/dehydratase family XSP_003747 PF00486 Transcriptional regulatory protein, C terminal XSP_003747 PF00072 Response regulator receiver domain XSP_003748 PF08521 Two-component sensor kinase N-terminal XSP_003748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003748 PF00512 His Kinase A (phospho-acceptor) domain XSP_003752 PF00595 PDZ domain XSP_003752 PF13180 PDZ domain XSP_003756 PF01594 AI-2E family transporter XSP_003757 PF13419 Haloacid dehalogenase-like hydrolase XSP_003758 PF00883 Cytosol aminopeptidase family, catalytic domain XSP_003758 PF02789 Cytosol aminopeptidase family, N-terminal domain XSP_003762 PF00196 Bacterial regulatory proteins, luxR family XSP_003762 PF00072 Response regulator receiver domain XSP_003763 PF07730 Histidine kinase XSP_003764 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003765 PF00005 ABC transporter XSP_003769 PF00892 EamA-like transporter family XSP_003770 PF00892 EamA-like transporter family XSP_003773 PF00753 Metallo-beta-lactamase superfamily XSP_003774 PF00579 tRNA synthetases class I (W and Y) XSP_003775 PF05532 CsbD-like XSP_003778 PF00491 Arginase family XSP_003783 PF02223 Thymidylate kinase XSP_003786 PF03309 Type III pantothenate kinase XSP_003787 PF03099 Biotin/lipoate A/B protein ligase family XSP_003787 PF08279 HTH domain XSP_003787 PF02237 Biotin protein ligase C terminal domain XSP_003789 PF06167 Glucose-regulated metallo-peptidase M90 XSP_003792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003793 PF00486 Transcriptional regulatory protein, C terminal XSP_003793 PF00072 Response regulator receiver domain XSP_003795 PF01207 Dihydrouridine synthase (Dus) XSP_003798 PF00199 Catalase XSP_003798 PF06628 Catalase-related immune-responsive XSP_003800 PF06733 DEAD_2 XSP_003800 PF13307 Helicase C-terminal domain XSP_003803 PF01488 Shikimate / quinate 5-dehydrogenase XSP_003803 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XSP_003803 PF08501 Shikimate dehydrogenase substrate binding domain XSP_003805 PF00175 Oxidoreductase NAD-binding domain XSP_003805 PF00667 FAD binding domain XSP_003805 PF00258 Flavodoxin XSP_003806 PF00490 Delta-aminolevulinic acid dehydratase XSP_003810 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XSP_003817 PF00326 Prolyl oligopeptidase family XSP_003817 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_003818 PF00043 Glutathione S-transferase, C-terminal domain XSP_003818 PF02798 Glutathione S-transferase, N-terminal domain XSP_003822 PF04820 Tryptophan halogenase XSP_003825 PF00005 ABC transporter XSP_003827 PF01381 Helix-turn-helix XSP_003838 PF00665 Integrase core domain XSP_003838 PF09299 Mu transposase, C-terminal XSP_003842 PF01229 Glycosyl hydrolases family 39 XSP_003843 PF02583 Metal-sensitive transcriptional repressor XSP_003844 PF01545 Cation efflux family XSP_003845 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_003845 PF00970 Oxidoreductase FAD-binding domain XSP_003845 PF00175 Oxidoreductase NAD-binding domain XSP_003846 PF00005 ABC transporter XSP_003847 PF01061 ABC-2 type transporter XSP_003848 PF08546 Ketopantoate reductase PanE/ApbA C terminal XSP_003848 PF02558 Ketopantoate reductase PanE/ApbA XSP_003850 PF03061 Thioesterase superfamily XSP_003853 PF00268 Ribonucleotide reductase, small chain XSP_003854 PF03477 ATP cone domain XSP_003854 PF02867 Ribonucleotide reductase, barrel domain XSP_003854 PF00317 Ribonucleotide reductase, all-alpha domain XSP_003856 PF13380 CoA binding domain XSP_003856 PF13607 Succinyl-CoA ligase like flavodoxin domain XSP_003856 PF00583 Acetyltransferase (GNAT) family XSP_003859 PF00593 TonB dependent receptor XSP_003859 PF04886 PT repeat XSP_003859 PF07715 TonB-dependent Receptor Plug Domain XSP_003860 PF03448 MgtE intracellular N domain XSP_003860 PF01769 Divalent cation transporter XSP_003860 PF00571 CBS domain XSP_003861 PF00999 Sodium/hydrogen exchanger family XSP_003861 PF02254 TrkA-N domain XSP_003862 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XSP_003862 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XSP_003863 PF00723 Glycosyl hydrolases family 15 XSP_003866 PF05166 YcgL domain XSP_003867 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003867 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003870 PF04820 Tryptophan halogenase XSP_003878 PF07977 FabA-like domain XSP_003879 PF01553 Acyltransferase XSP_003881 PF00550 Phosphopantetheine attachment site XSP_003882 PF04820 Tryptophan halogenase XSP_003888 PF01218 Coproporphyrinogen III oxidase XSP_003889 PF01367 5'-3' exonuclease, C-terminal SAM fold XSP_003889 PF00476 DNA polymerase family A XSP_003889 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XSP_003889 PF01612 3'-5' exonuclease XSP_003891 PF03793 PASTA domain XSP_003891 PF00069 Protein kinase domain XSP_003895 PF14602 Hexapeptide repeat of succinyl-transferase XSP_003895 PF12464 Maltose acetyltransferase XSP_003896 PF00580 UvrD/REP helicase N-terminal domain XSP_003896 PF13361 UvrD-like helicase C-terminal domain XSP_003898 PF13396 Phospholipase_D-nuclease N-terminal XSP_003898 PF13091 PLD-like domain XSP_003899 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003900 PF03737 Aldolase/RraA XSP_003901 PF04303 PrpF protein XSP_003902 PF04909 Amidohydrolase XSP_003903 PF00471 Ribosomal protein L33 XSP_003904 PF00830 Ribosomal L28 family XSP_003905 PF00873 AcrB/AcrD/AcrF family XSP_003906 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003910 PF02527 rRNA small subunit methyltransferase G XSP_003912 PF09423 PhoD-like phosphatase XSP_003912 PF16655 PhoD-like phosphatase, N-terminal domain XSP_003913 PF09423 PhoD-like phosphatase XSP_003913 PF16655 PhoD-like phosphatase, N-terminal domain XSP_003914 PF01648 4'-phosphopantetheinyl transferase superfamily XSP_003915 PF04226 Transglycosylase associated protein XSP_003920 PF00480 ROK family XSP_003922 PF09312 SurA N-terminal domain XSP_003922 PF00639 PPIC-type PPIASE domain XSP_003924 PF00474 Sodium:solute symporter family XSP_003927 PF13193 AMP-binding enzyme C-terminal domain XSP_003927 PF00501 AMP-binding enzyme XSP_003927 PF16177 Acetyl-coenzyme A synthetase N-terminus XSP_003928 PF00072 Response regulator receiver domain XSP_003928 PF00196 Bacterial regulatory proteins, luxR family XSP_003932 PF04616 Glycosyl hydrolases family 43 XSP_003932 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XSP_003934 PF00248 Aldo/keto reductase family XSP_003937 PF01557 Fumarylacetoacetate (FAA) hydrolase family XSP_003938 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003938 PF13378 Enolase C-terminal domain-like XSP_003939 PF05336 L-rhamnose mutarotase XSP_003940 PF07690 Major Facilitator Superfamily XSP_003941 PF09339 IclR helix-turn-helix domain XSP_003941 PF01614 Bacterial transcriptional regulator XSP_003942 PF02659 Putative manganese efflux pump XSP_003943 PF02659 Putative manganese efflux pump XSP_003944 PF00512 His Kinase A (phospho-acceptor) domain XSP_003944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003945 PF06165 Glycosyltransferase family 36 XSP_003945 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XSP_003948 PF01011 PQQ enzyme repeat XSP_003948 PF13360 PQQ-like domain XSP_003948 PF13570 PQQ-like domain XSP_003952 PF04357 TamB, inner membrane protein subunit of TAM complex XSP_003953 PF17243 POTRA domain TamA domain 1 XSP_003953 PF01103 Surface antigen XSP_003954 PF00593 TonB dependent receptor XSP_003954 PF07715 TonB-dependent Receptor Plug Domain XSP_003955 PF13181 Tetratricopeptide repeat XSP_003956 PF05746 DALR anticodon binding domain XSP_003956 PF02092 Glycyl-tRNA synthetase beta subunit XSP_003957 PF02091 Glycyl-tRNA synthetase alpha subunit XSP_003958 PF00437 Type II/IV secretion system protein XSP_003958 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XSP_003959 PF00117 Glutamine amidotransferase class-I XSP_003959 PF00958 GMP synthase C terminal domain XSP_003961 PF00902 Sec-independent protein translocase protein (TatC) XSP_003962 PF02416 mttA/Hcf106 family XSP_003963 PF02416 mttA/Hcf106 family XSP_003965 PF00762 Ferrochelatase XSP_003968 PF04381 Putative exonuclease, RdgC XSP_003969 PF01171 PP-loop family XSP_003971 PF00356 Bacterial regulatory proteins, lacI family XSP_003972 PF07477 Glycosyl hydrolase family 67 C-terminus XSP_003972 PF07488 Glycosyl hydrolase family 67 middle domain XSP_003972 PF03648 Glycosyl hydrolase family 67 N-terminus XSP_003974 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003974 PF13378 Enolase C-terminal domain-like XSP_003976 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_003976 PF07691 PA14 domain XSP_003976 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_003976 PF14310 Fibronectin type III-like domain XSP_003977 PF01232 Mannitol dehydrogenase Rossmann domain XSP_003977 PF08125 Mannitol dehydrogenase C-terminal domain XSP_003981 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_003981 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_003982 PF02652 L-lactate permease XSP_003987 PF08450 SMP-30/Gluconolactonase/LRE-like region XSP_003988 PF00331 Glycosyl hydrolase family 10 XSP_003989 PF00703 Glycosyl hydrolases family 2 XSP_003989 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XSP_003989 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_003989 PF16355 Domain of unknown function (DUF4982) XSP_003989 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XSP_003990 PF02614 Glucuronate isomerase XSP_003991 PF00553 Cellulose binding domain XSP_003991 PF03422 Carbohydrate binding module (family 6) XSP_003991 PF00331 Glycosyl hydrolase family 10 XSP_003995 PF04616 Glycosyl hydrolases family 43 XSP_003999 PF14765 Polyketide synthase dehydratase XSP_003999 PF00698 Acyl transferase domain XSP_003999 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003999 PF00107 Zinc-binding dehydrogenase XSP_003999 PF16197 Ketoacyl-synthetase C-terminal extension XSP_003999 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003999 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003999 PF08659 KR domain XSP_003999 PF00550 Phosphopantetheine attachment site XSP_004000 PF01553 Acyltransferase XSP_004002 PF00356 Bacterial regulatory proteins, lacI family XSP_004005 PF04820 Tryptophan halogenase XSP_004006 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XSP_004007 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XSP_004008 PF04337 Protein of unknown function, DUF480 XSP_004011 PF13302 Acetyltransferase (GNAT) domain XSP_004012 PF13361 UvrD-like helicase C-terminal domain XSP_004012 PF00580 UvrD/REP helicase N-terminal domain XSP_004013 PF00265 Thymidine kinase XSP_004014 PF08446 PAS fold XSP_004014 PF00512 His Kinase A (phospho-acceptor) domain XSP_004014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_004014 PF01590 GAF domain XSP_004014 PF00360 Phytochrome region XSP_004015 PF04349 Periplasmic glucan biosynthesis protein, MdoG XSP_004017 PF06827 Zinc finger found in FPG and IleRS XSP_004017 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XSP_004017 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XSP_004023 PF03594 Benzoate membrane transport protein XSP_004024 PF13426 PAS domain XSP_004024 PF08446 PAS fold XSP_004024 PF01590 GAF domain XSP_004024 PF00360 Phytochrome region XSP_004025 PF01126 Heme oxygenase XSP_004026 PF07690 Major Facilitator Superfamily XSP_004030 PF01263 Aldose 1-epimerase XSP_004032 PF02810 SEC-C motif XSP_004033 PF01925 Sulfite exporter TauE/SafE XSP_004034 PF00593 TonB dependent receptor XSP_004034 PF07715 TonB-dependent Receptor Plug Domain XSP_004038 PF01227 GTP cyclohydrolase I XSP_004040 PF07869 Protein of unknown function (DUF1656) XSP_004041 PF00529 HlyD membrane-fusion protein of T1SS XSP_004041 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_004042 PF02321 Outer membrane efflux protein XSP_004043 PF04632 Fusaric acid resistance protein family XSP_004044 PF00083 Sugar (and other) transporter XSP_004047 PF13396 Phospholipase_D-nuclease N-terminal XSP_004047 PF13091 PLD-like domain XSP_004052 PF01850 PIN domain XSP_004059 PF00849 RNA pseudouridylate synthase XSP_004066 PF09386 Antitoxin ParD XSP_004067 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XSP_004070 PF13538 UvrD-like helicase C-terminal domain XSP_004071 PF13361 UvrD-like helicase C-terminal domain XSP_004071 PF12705 PD-(D/E)XK nuclease superfamily XSP_004071 PF00580 UvrD/REP helicase N-terminal domain XSP_004072 PF17946 RecC C-terminal domain XSP_004077 PF00583 Acetyltransferase (GNAT) family XSP_004079 PF00005 ABC transporter XSP_004080 PF02405 Permease MlaE XSP_004081 PF02470 MlaD protein XSP_004082 PF05494 MlaC protein XSP_004084 PF04333 MlaA lipoprotein XSP_004086 PF00255 Glutathione peroxidase XSP_004088 PF02646 RmuC family XSP_004089 PF08240 Alcohol dehydrogenase GroES-like domain XSP_004089 PF00107 Zinc-binding dehydrogenase XSP_004090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_004090 PF03466 LysR substrate binding domain XSP_004092 PF00043 Glutathione S-transferase, C-terminal domain XSP_004092 PF13417 Glutathione S-transferase, N-terminal domain XSP_004094 PF13520 Amino acid permease XSP_004095 PF07971 Glycosyl hydrolase family 92 XSP_004095 PF17678 Glycosyl hydrolase family 92 N-terminal domain XSP_004097 PF00990 Diguanylate cyclase, GGDEF domain XSP_004098 PF17853 GGDEF-like domain XSP_004098 PF05651 Putative sugar diacid recognition XSP_004098 PF13556 PucR C-terminal helix-turn-helix domain XSP_004099 PF02595 Glycerate kinase family XSP_004100 PF07690 Major Facilitator Superfamily XSP_004103 PF01804 Penicillin amidase XSP_004104 PF00593 TonB dependent receptor XSP_004104 PF07715 TonB-dependent Receptor Plug Domain XSP_004108 PF10672 S-adenosylmethionine-dependent methyltransferase XSP_004108 PF17785 PUA-like domain XSP_004109 PF03741 Integral membrane protein TerC family XSP_004110 PF01694 Rhomboid family XSP_004111 PF03009 Glycerophosphoryl diester phosphodiesterase family XSP_004114 PF01569 PAP2 superfamily XSP_004115 PF12631 MnmE helical domain XSP_004115 PF10396 GTP-binding protein TrmE N-terminus XSP_004115 PF01926 50S ribosome-binding GTPase XSP_004116 PF14849 YidC periplasmic domain XSP_004116 PF02096 60Kd inner membrane protein XSP_004117 PF00825 Ribonuclease P XSP_004118 PF00468 Ribosomal protein L34 XSP_004121 PF11740 Plasmid replication region DNA-binding N-term XSP_004134 PF06067 Domain of unknown function (DUF932) XSP_004139 PF18495 Antitoxin VbhA XSP_004141 PF17841 BID domain of Bartonella effector protein (Bep) XSP_004141 PF02661 Fic/DOC family XSP_004144 PF03230 Antirestriction protein XSP_004151 PF08751 TrwC relaxase XSP_004151 PF18340 DNA relaxase TraI 2B/2B-like domain XSP_004151 PF07057 DNA helicase TraI XSP_004151 PF18272 single-stranded DNA binding TraI N-terminal subdomain XSP_004151 PF07057 DNA helicase TraI XSP_004151 PF18340 DNA relaxase TraI 2B/2B-like domain XSP_004151 PF08751 TrwC relaxase XSP_004151 PF18272 single-stranded DNA binding TraI N-terminal subdomain XSP_004154 PF13091 PLD-like domain XSP_004156 PF03743 Bacterial conjugation TrbI-like protein XSP_004162 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XSP_004169 PF02796 Helix-turn-helix domain of resolvase XSP_004169 PF00239 Resolvase, N terminal domain