locus-tag class description BJD11_00010 PF01526 Tn3 transposase DDE domain BJD11_00010 PF13700 Domain of unknown function (DUF4158) BJD11_00035 PF13276 HTH-like domain BJD11_00035 PF13683 Integrase core domain BJD11_00040 PF01527 Transposase BJD11_00070 PF02599 Global regulator protein family BJD11_00075 PF00216 Bacterial DNA-binding protein BJD11_00105 PF04381 Putative exonuclease, RdgC BJD11_00115 PF13098 Thioredoxin-like domain BJD11_00115 PF10411 Disulfide bond isomerase protein N-terminus BJD11_00190 PF00563 EAL domain BJD11_00190 PF00990 Diguanylate cyclase, GGDEF domain BJD11_00190 PF08495 FIST N domain BJD11_00190 PF10442 FIST C domain BJD11_00195 PF01751 Toprim domain BJD11_00195 PF01131 DNA topoisomerase BJD11_00305 PF00376 MerR family regulatory protein BJD11_00305 PF13614 AAA domain BJD11_00310 PF17762 HTH domain found in ParB protein BJD11_00310 PF02195 ParB-like nuclease domain BJD11_00315 PF17762 HTH domain found in ParB protein BJD11_00315 PF02195 ParB-like nuclease domain BJD11_00335 PF00437 Type II/IV secretion system protein BJD11_00380 PF00437 Type II/IV secretion system protein BJD11_00395 PF00437 Type II/IV secretion system protein BJD11_00400 PF04917 Bacterial shufflon protein, N-terminal constant region BJD11_00425 PF01609 Transposase DDE domain BJD11_00425 PF05598 Transposase domain (DUF772) BJD11_00430 PF13683 Integrase core domain BJD11_00430 PF13276 HTH-like domain BJD11_00435 PF01527 Transposase BJD11_00450 PF13333 Integrase core domain BJD11_00450 PF00665 Integrase core domain BJD11_00450 PF13276 HTH-like domain BJD11_00455 PF01527 Transposase BJD11_00525 PF13368 Topoisomerase C-terminal repeat BJD11_00525 PF01751 Toprim domain BJD11_00525 PF01131 DNA topoisomerase BJD11_00575 PF13098 Thioredoxin-like domain BJD11_00595 PF03796 DnaB-like helicase C terminal domain BJD11_00595 PF00772 DnaB-like helicase N terminal domain BJD11_00650 PF13683 Integrase core domain BJD11_00650 PF13276 HTH-like domain BJD11_00655 PF01527 Transposase BJD11_00740 PF02810 SEC-C motif BJD11_00740 PF07517 SecA DEAD-like domain BJD11_00740 PF07516 SecA Wing and Scaffold domain BJD11_00740 PF01043 SecA preprotein cross-linking domain BJD11_00755 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_00780 PF00580 UvrD/REP helicase N-terminal domain BJD11_00780 PF13361 UvrD-like helicase C-terminal domain BJD11_00850 PF01527 Transposase BJD11_00855 PF13683 Integrase core domain BJD11_00855 PF13276 HTH-like domain BJD11_00895 PF01131 DNA topoisomerase BJD11_00895 PF01751 Toprim domain BJD11_00940 PF06414 Zeta toxin BJD11_00970 PF13276 HTH-like domain BJD11_00970 PF13683 Integrase core domain BJD11_00975 PF01527 Transposase BJD11_00985 PF01526 Tn3 transposase DDE domain BJD11_00985 PF13700 Domain of unknown function (DUF4158) BJD11_01010 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BJD11_01015 PF02796 Helix-turn-helix domain of resolvase BJD11_01015 PF00239 Resolvase, N terminal domain BJD11_01035 PF01527 Transposase BJD11_01045 PF02796 Helix-turn-helix domain of resolvase BJD11_01045 PF00239 Resolvase, N terminal domain BJD11_01060 PF13700 Domain of unknown function (DUF4158) BJD11_01060 PF01526 Tn3 transposase DDE domain BJD11_01065 PF02810 SEC-C motif BJD11_01065 PF03695 Uncharacterised protein family (UPF0149) BJD11_01110 PF03960 ArsC family BJD11_01115 PF03358 NADPH-dependent FMN reductase BJD11_01130 PF01758 Sodium Bile acid symporter family BJD11_01135 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_01140 PF00743 Flavin-binding monooxygenase-like BJD11_01150 PF12849 PBP superfamily domain BJD11_01155 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_01160 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_01165 PF00005 ABC transporter BJD11_01170 PF01895 PhoU domain BJD11_01185 PF07516 SecA Wing and Scaffold domain BJD11_01185 PF01043 SecA preprotein cross-linking domain BJD11_01185 PF07517 SecA DEAD-like domain BJD11_01185 PF02810 SEC-C motif BJD11_01200 PF07411 Domain of unknown function (DUF1508) BJD11_01230 PF00529 HlyD membrane-fusion protein of T1SS BJD11_01230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_01235 PF00873 AcrB/AcrD/AcrF family BJD11_01250 PF00491 Arginase family BJD11_01265 PF04945 YHS domain BJD11_01270 PF05425 Copper resistance protein D BJD11_01300 PF05275 Copper resistance protein B precursor (CopB) BJD11_01305 PF07732 Multicopper oxidase BJD11_01305 PF07731 Multicopper oxidase BJD11_01305 PF00394 Multicopper oxidase BJD11_01330 PF13175 AAA ATPase domain BJD11_01345 PF00873 AcrB/AcrD/AcrF family BJD11_01370 PF03239 Iron permease FTR1 family BJD11_01375 PF00376 MerR family regulatory protein BJD11_01375 PF09278 MerR, DNA binding BJD11_01385 PF01526 Tn3 transposase DDE domain BJD11_01385 PF13700 Domain of unknown function (DUF4158) BJD11_01410 PF00589 Phage integrase family BJD11_01460 PF01527 Transposase BJD11_01480 PF13333 Integrase core domain BJD11_01480 PF00665 Integrase core domain BJD11_01480 PF13276 HTH-like domain BJD11_01500 PF01555 DNA methylase BJD11_01510 PF01527 Transposase BJD11_01515 PF13683 Integrase core domain BJD11_01515 PF13276 HTH-like domain BJD11_01530 PF05598 Transposase domain (DUF772) BJD11_01615 PF10134 Replication initiator protein A BJD11_01620 PF13333 Integrase core domain BJD11_01620 PF13276 HTH-like domain BJD11_01620 PF00665 Integrase core domain BJD11_01625 PF01527 Transposase BJD11_01640 PF00376 MerR family regulatory protein BJD11_01640 PF13614 AAA domain BJD11_01660 PF00145 C-5 cytosine-specific DNA methylase BJD11_01670 PF00816 H-NS histone family BJD11_01685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD11_01710 PF03432 Relaxase/Mobilisation nuclease domain BJD11_01710 PF18821 Large polyvalent protein-associated domain 7 BJD11_01725 PF00437 Type II/IV secretion system protein BJD11_01760 PF05598 Transposase domain (DUF772) BJD11_01775 PF10410 DnaB-helicase binding domain of primase BJD11_01775 PF08275 DNA primase catalytic core, N-terminal domain BJD11_01775 PF08278 DNA primase DnaG DnaB-binding BJD11_01775 PF01807 CHC2 zinc finger BJD11_01825 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BJD11_01840 PF07015 VirC1 protein BJD11_01855 PF00239 Resolvase, N terminal domain BJD11_01855 PF02796 Helix-turn-helix domain of resolvase BJD11_01865 PF00872 Transposase, Mutator family BJD11_01920 PF07057 DNA helicase TraI BJD11_01920 PF18340 DNA relaxase TraI 2B/2B-like domain BJD11_01920 PF18272 single-stranded DNA binding TraI N-terminal subdomain BJD11_01920 PF08751 TrwC relaxase BJD11_01945 PF13091 PLD-like domain BJD11_01955 PF01464 Transglycosylase SLT domain BJD11_01960 PF00437 Type II/IV secretion system protein BJD11_01965 PF03743 Bacterial conjugation TrbI-like protein BJD11_01970 PF03524 Conjugal transfer protein BJD11_01980 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD11_02055 PF01527 Transposase BJD11_02060 PF13683 Integrase core domain BJD11_02060 PF13276 HTH-like domain BJD11_02085 PF01936 NYN domain BJD11_02085 PF09722 Protein of unknown function (DUF2384) BJD11_02140 PF01751 Toprim domain BJD11_02140 PF01131 DNA topoisomerase BJD11_02160 PF03743 Bacterial conjugation TrbI-like protein BJD11_02175 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD11_02185 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BJD11_02200 PF00437 Type II/IV secretion system protein BJD11_02220 PF01527 Transposase BJD11_02235 PF02534 Type IV secretory system Conjugative DNA transfer BJD11_02270 PF08521 Two-component sensor kinase N-terminal BJD11_02270 PF00512 His Kinase A (phospho-acceptor) domain BJD11_02270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_02275 PF00072 Response regulator receiver domain BJD11_02275 PF00486 Transcriptional regulatory protein, C terminal BJD11_02280 PF08338 Domain of unknown function (DUF1731) BJD11_02280 PF01370 NAD dependent epimerase/dehydratase family BJD11_02320 PF01139 tRNA-splicing ligase RtcB BJD11_02345 PF00440 Bacterial regulatory proteins, tetR family BJD11_02350 PF00175 Oxidoreductase NAD-binding domain BJD11_02350 PF00970 Oxidoreductase FAD-binding domain BJD11_02350 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD11_02355 PF00487 Fatty acid desaturase BJD11_02360 PF00563 EAL domain BJD11_02360 PF12792 CSS motif domain associated with EAL BJD11_02375 PF01078 Magnesium chelatase, subunit ChlI BJD11_02375 PF13335 Magnesium chelatase, subunit ChlI C-terminal BJD11_02380 PF04380 Membrane fusogenic activity BJD11_02385 PF00543 Nitrogen regulatory protein P-II BJD11_02395 PF00041 Fibronectin type III domain BJD11_02395 PF00963 Cohesin domain BJD11_02395 PF00754 F5/8 type C domain BJD11_02395 PF02838 Glycosyl hydrolase family 20, domain 2 BJD11_02395 PF07555 beta-N-acetylglucosaminidase BJD11_02420 PF17284 Spermidine synthase tetramerisation domain BJD11_02425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD11_02425 PF17810 Arginine decarboxylase helical bundle domain BJD11_02425 PF17944 Arginine decarboxylase C-terminal helical extension BJD11_02435 PF03033 Glycosyltransferase family 28 N-terminal domain BJD11_02450 PF00106 short chain dehydrogenase BJD11_02465 PF03485 Arginyl tRNA synthetase N terminal domain BJD11_02465 PF05746 DALR anticodon binding domain BJD11_02465 PF00750 tRNA synthetases class I (R) BJD11_02470 PF04002 RadC-like JAB domain BJD11_02475 PF04127 DNA / pantothenate metabolism flavoprotein BJD11_02475 PF02441 Flavoprotein BJD11_02480 PF00692 dUTPase BJD11_02485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD11_02485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD11_02485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD11_02485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD11_02500 PF00535 Glycosyl transferase family 2 BJD11_02505 PF01370 NAD dependent epimerase/dehydratase family BJD11_02520 PF17762 HTH domain found in ParB protein BJD11_02520 PF02195 ParB-like nuclease domain BJD11_02525 PF13614 AAA domain BJD11_02535 PF00156 Phosphoribosyl transferase domain BJD11_02540 PF03372 Endonuclease/Exonuclease/phosphatase family BJD11_02545 PF07690 Major Facilitator Superfamily BJD11_02555 PF03702 Anhydro-N-acetylmuramic acid kinase BJD11_02560 PF01551 Peptidase family M23 BJD11_02560 PF04225 Opacity-associated protein A LysM-like domain BJD11_02565 PF00579 tRNA synthetases class I (W and Y) BJD11_02595 PF00171 Aldehyde dehydrogenase family BJD11_02595 PF14850 DNA-binding domain of Proline dehydrogenase BJD11_02595 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BJD11_02595 PF01619 Proline dehydrogenase BJD11_02605 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BJD11_02605 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BJD11_02610 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD11_02615 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BJD11_02620 PF00510 Cytochrome c oxidase subunit III BJD11_02645 PF01040 UbiA prenyltransferase family BJD11_02655 PF13593 SBF-like CPA transporter family (DUF4137) BJD11_02660 PF10410 DnaB-helicase binding domain of primase BJD11_02660 PF08278 DNA primase DnaG DnaB-binding BJD11_02660 PF08275 DNA primase catalytic core, N-terminal domain BJD11_02660 PF01807 CHC2 zinc finger BJD11_02665 PF03631 Virulence factor BrkB BJD11_02675 PF09424 Yqey-like protein BJD11_02680 PF01165 Ribosomal protein S21 BJD11_02685 PF00814 Glycoprotease family BJD11_02690 PF02152 Dihydroneopterin aldolase BJD11_02695 PF14310 Fibronectin type III-like domain BJD11_02695 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD11_02695 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD11_02700 PF07995 Glucose / Sorbosone dehydrogenase BJD11_02705 PF05360 yiaA/B two helix domain BJD11_02720 PF13520 Amino acid permease BJD11_02730 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD11_02730 PF13378 Enolase C-terminal domain-like BJD11_02740 PF01510 N-acetylmuramoyl-L-alanine amidase BJD11_02745 PF01427 D-ala-D-ala dipeptidase BJD11_02790 PF07063 Domain of unknown function (DUF1338) BJD11_02795 PF00873 AcrB/AcrD/AcrF family BJD11_02800 PF00873 AcrB/AcrD/AcrF family BJD11_02805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_02810 PF07687 Peptidase dimerisation domain BJD11_02810 PF01546 Peptidase family M20/M25/M40 BJD11_02815 PF14489 QueF-like protein BJD11_02815 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BJD11_02820 PF01476 LysM domain BJD11_02820 PF04972 BON domain BJD11_02830 PF03971 Monomeric isocitrate dehydrogenase BJD11_02840 PF03466 LysR substrate binding domain BJD11_02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_02845 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BJD11_02855 PF07497 Rho termination factor, RNA-binding domain BJD11_02855 PF07498 Rho termination factor, N-terminal domain BJD11_02855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD11_02860 PF00085 Thioredoxin BJD11_02865 PF00270 DEAD/DEAH box helicase BJD11_02865 PF00271 Helicase conserved C-terminal domain BJD11_02865 PF12300 ATP-dependent RNA helicase RhlB BJD11_02870 PF00005 ABC transporter BJD11_02875 PF18075 FtsX extracellular domain BJD11_02880 PF00072 Response regulator receiver domain BJD11_02880 PF01339 CheB methylesterase BJD11_02885 PF03167 Uracil DNA glycosylase superfamily BJD11_02890 PF04545 Sigma-70, region 4 BJD11_02890 PF04542 Sigma-70 region 2 BJD11_02895 PF03458 UPF0126 domain BJD11_02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_02920 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BJD11_02920 PF18074 Primosomal protein N C-terminal domain BJD11_02920 PF17764 3′ DNA-binding domain (3′BD) BJD11_02920 PF00271 Helicase conserved C-terminal domain BJD11_02920 PF00270 DEAD/DEAH box helicase BJD11_02940 PF01554 MatE BJD11_02945 PF01343 Peptidase family S49 BJD11_02975 PF01300 Telomere recombination BJD11_02980 PF13368 Topoisomerase C-terminal repeat BJD11_02980 PF01751 Toprim domain BJD11_02980 PF01131 DNA topoisomerase BJD11_02990 PF00114 Pilin (bacterial filament) BJD11_02990 PF07963 Prokaryotic N-terminal methylation motif BJD11_02995 PF04361 Protein of unknown function (DUF494) BJD11_03000 PF02481 DNA recombination-mediator protein A BJD11_03000 PF17782 DprA winged helix domain BJD11_03005 PF01476 LysM domain BJD11_03010 PF01327 Polypeptide deformylase BJD11_03015 PF02911 Formyl transferase, C-terminal domain BJD11_03015 PF00551 Formyl transferase BJD11_03020 PF01029 NusB family BJD11_03020 PF01189 16S rRNA methyltransferase RsmB/F BJD11_03035 PF00535 Glycosyl transferase family 2 BJD11_03055 PF00925 GTP cyclohydrolase II BJD11_03070 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD11_03075 PF02580 D-Tyr-tRNA(Tyr) deacylase BJD11_03080 PF04546 Sigma-70, non-essential region BJD11_03080 PF04539 Sigma-70 region 3 BJD11_03080 PF04542 Sigma-70 region 2 BJD11_03080 PF04545 Sigma-70, region 4 BJD11_03080 PF00140 Sigma-70 factor, region 1.2 BJD11_03080 PF03979 Sigma-70 factor, region 1.1 BJD11_03130 PF00717 Peptidase S24-like BJD11_03155 PF03466 LysR substrate binding domain BJD11_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_03165 PF00557 Metallopeptidase family M24 BJD11_03175 PF00654 Voltage gated chloride channel BJD11_03180 PF00916 Sulfate permease family BJD11_03180 PF01740 STAS domain BJD11_03210 PF02525 Flavodoxin-like fold BJD11_03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_03215 PF03466 LysR substrate binding domain BJD11_03235 PF01042 Endoribonuclease L-PSP BJD11_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_03240 PF03466 LysR substrate binding domain BJD11_03250 PF00005 ABC transporter BJD11_03265 PF00593 TonB dependent receptor BJD11_03265 PF07715 TonB-dependent Receptor Plug Domain BJD11_03310 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_03310 PF13823 Alcohol dehydrogenase GroES-associated BJD11_03310 PF00107 Zinc-binding dehydrogenase BJD11_03325 PF00005 ABC transporter BJD11_03325 PF00664 ABC transporter transmembrane region BJD11_03335 PF03275 UDP-galactopyranose mutase BJD11_03345 PF16363 GDP-mannose 4,6 dehydratase BJD11_03365 PF02322 Cytochrome bd terminal oxidase subunit II BJD11_03370 PF01654 Cytochrome bd terminal oxidase subunit I BJD11_03385 PF02954 Bacterial regulatory protein, Fis family BJD11_03385 PF00072 Response regulator receiver domain BJD11_03385 PF00158 Sigma-54 interaction domain BJD11_03400 PF03705 CheR methyltransferase, all-alpha domain BJD11_03400 PF01339 CheB methylesterase BJD11_03400 PF08448 PAS fold BJD11_03400 PF01739 CheR methyltransferase, SAM binding domain BJD11_03415 PF05067 Manganese containing catalase BJD11_03420 PF05974 Domain of unknown function (DUF892) BJD11_03440 PF02743 Cache domain BJD11_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_03440 PF06580 Histidine kinase BJD11_03440 PF00672 HAMP domain BJD11_03445 PF04397 LytTr DNA-binding domain BJD11_03445 PF00072 Response regulator receiver domain BJD11_03455 PF13520 Amino acid permease BJD11_03470 PF05649 Peptidase family M13 BJD11_03470 PF01431 Peptidase family M13 BJD11_03490 PF03358 NADPH-dependent FMN reductase BJD11_03495 PF03466 LysR substrate binding domain BJD11_03495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_03500 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD11_03510 PF03167 Uracil DNA glycosylase superfamily BJD11_03515 PF02469 Fasciclin domain BJD11_03525 PF00999 Sodium/hydrogen exchanger family BJD11_03530 PF00005 ABC transporter BJD11_03535 PF01061 ABC-2 type transporter BJD11_03560 PF00691 OmpA family BJD11_03560 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD11_03565 PF01618 MotA/TolQ/ExbB proton channel family BJD11_03575 PF01641 SelR domain BJD11_03585 PF01037 Lrp/AsnC ligand binding domain BJD11_03590 PF01266 FAD dependent oxidoreductase BJD11_03595 PF00842 Alanine racemase, C-terminal domain BJD11_03595 PF01168 Alanine racemase, N-terminal domain BJD11_03615 PF00512 His Kinase A (phospho-acceptor) domain BJD11_03615 PF00989 PAS fold BJD11_03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_03625 PF07995 Glucose / Sorbosone dehydrogenase BJD11_03640 PF05175 Methyltransferase small domain BJD11_03640 PF08468 Methyltransferase small domain N-terminal BJD11_03645 PF01479 S4 domain BJD11_03645 PF00849 RNA pseudouridylate synthase BJD11_03650 PF13419 Haloacid dehalogenase-like hydrolase BJD11_03680 PF18415 Histidine kinase receptor ArcB trans-membrane domain BJD11_03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_03680 PF01627 Hpt domain BJD11_03680 PF00072 Response regulator receiver domain BJD11_03680 PF00989 PAS fold BJD11_03680 PF00512 His Kinase A (phospho-acceptor) domain BJD11_03690 PF04461 Protein of unknown function (DUF520) BJD11_03695 PF00892 EamA-like transporter family BJD11_03700 PF09383 NIL domain BJD11_03700 PF00005 ABC transporter BJD11_03705 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_03710 PF03180 NLPA lipoprotein BJD11_03770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD11_03770 PF00364 Biotin-requiring enzyme BJD11_03770 PF02817 e3 binding domain BJD11_03780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD11_03780 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_03800 PF00119 ATP synthase A chain BJD11_03805 PF00137 ATP synthase subunit C BJD11_03810 PF00430 ATP synthase B/B' CF(0) BJD11_03815 PF00213 ATP synthase delta (OSCP) subunit BJD11_03820 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD11_03820 PF00306 ATP synthase alpha/beta chain, C terminal domain BJD11_03820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD11_03825 PF00231 ATP synthase BJD11_03830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD11_03830 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD11_03835 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BJD11_03835 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BJD11_03840 PF01817 Chorismate mutase type II BJD11_03850 PF12804 MobA-like NTP transferase domain BJD11_03850 PF14602 Hexapeptide repeat of succinyl-transferase BJD11_03850 PF00132 Bacterial transferase hexapeptide (six repeats) BJD11_03855 PF00512 His Kinase A (phospho-acceptor) domain BJD11_03855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_03860 PF00158 Sigma-54 interaction domain BJD11_03860 PF00072 Response regulator receiver domain BJD11_03860 PF02954 Bacterial regulatory protein, Fis family BJD11_03870 PF12704 MacB-like periplasmic core domain BJD11_03870 PF02687 FtsX-like permease family BJD11_03870 PF00005 ABC transporter BJD11_03875 PF02687 FtsX-like permease family BJD11_03875 PF12704 MacB-like periplasmic core domain BJD11_03880 PF00005 ABC transporter BJD11_03885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_03890 PF01380 SIS domain BJD11_03915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD11_03920 PF05275 Copper resistance protein B precursor (CopB) BJD11_03925 PF07732 Multicopper oxidase BJD11_03925 PF00394 Multicopper oxidase BJD11_03925 PF07731 Multicopper oxidase BJD11_03940 PF01432 Peptidase family M3 BJD11_03950 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD11_03950 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD11_03955 PF07977 FabA-like domain BJD11_03965 PF00817 impB/mucB/samB family BJD11_03965 PF11799 impB/mucB/samB family C-terminal domain BJD11_03970 PF13419 Haloacid dehalogenase-like hydrolase BJD11_03980 PF13185 GAF domain BJD11_03995 PF01242 6-pyruvoyl tetrahydropterin synthase BJD11_04000 PF00270 DEAD/DEAH box helicase BJD11_04000 PF00271 Helicase conserved C-terminal domain BJD11_04015 PF02798 Glutathione S-transferase, N-terminal domain BJD11_04015 PF14497 Glutathione S-transferase, C-terminal domain BJD11_04020 PF00437 Type II/IV secretion system protein BJD11_04040 PF00291 Pyridoxal-phosphate dependent enzyme BJD11_04040 PF00571 CBS domain BJD11_04045 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD11_04065 PF00005 ABC transporter BJD11_04070 PF13847 Methyltransferase domain BJD11_04070 PF00069 Protein kinase domain BJD11_04075 PF13477 Glycosyl transferase 4-like BJD11_04075 PF00534 Glycosyl transferases group 1 BJD11_04080 PF16363 GDP-mannose 4,6 dehydratase BJD11_04085 PF16363 GDP-mannose 4,6 dehydratase BJD11_04105 PF00535 Glycosyl transferase family 2 BJD11_04110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD11_04115 PF01012 Electron transfer flavoprotein domain BJD11_04115 PF00766 Electron transfer flavoprotein FAD-binding domain BJD11_04120 PF01012 Electron transfer flavoprotein domain BJD11_04125 PF16363 GDP-mannose 4,6 dehydratase BJD11_04130 PF00483 Nucleotidyl transferase BJD11_04135 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BJD11_04140 PF04321 RmlD substrate binding domain BJD11_04145 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD11_04145 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD11_04145 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD11_04150 PF00483 Nucleotidyl transferase BJD11_04150 PF01050 Mannose-6-phosphate isomerase BJD11_04155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD11_04155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD11_04155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD11_04155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD11_04160 PF01144 Coenzyme A transferase BJD11_04165 PF01144 Coenzyme A transferase BJD11_04190 PF03886 ABC-type transport auxiliary lipoprotein component BJD11_04190 PF02470 MlaD protein BJD11_04195 PF00005 ABC transporter BJD11_04200 PF02405 Permease MlaE BJD11_04210 PF00816 H-NS histone family BJD11_04215 PF03129 Anticodon binding domain BJD11_04215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD11_04215 PF04073 Aminoacyl-tRNA editing domain BJD11_04225 PF01066 CDP-alcohol phosphatidyltransferase BJD11_04245 PF00544 Pectate lyase BJD11_04250 PF01464 Transglycosylase SLT domain BJD11_04250 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BJD11_04255 PF07715 TonB-dependent Receptor Plug Domain BJD11_04255 PF00593 TonB dependent receptor BJD11_04260 PF08264 Anticodon-binding domain of tRNA BJD11_04260 PF10458 Valyl tRNA synthetase tRNA binding arm BJD11_04260 PF00133 tRNA synthetases class I (I, L, M and V) BJD11_04275 PF00883 Cytosol aminopeptidase family, catalytic domain BJD11_04275 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD11_04285 PF03739 Lipopolysaccharide export system permease LptF/LptG BJD11_04300 PF00589 Phage integrase family BJD11_04300 PF02899 Phage integrase, N-terminal SAM-like domain BJD11_04310 PF10411 Disulfide bond isomerase protein N-terminus BJD11_04310 PF13098 Thioredoxin-like domain BJD11_04325 PF13018 Extended Signal Peptide of Type V secretion system BJD11_04325 PF03895 YadA-like membrane anchor domain BJD11_04325 PF05658 Head domain of trimeric autotransporter adhesin BJD11_04325 PF05662 Coiled stalk of trimeric autotransporter adhesin BJD11_04330 PF00082 Subtilase family BJD11_04330 PF04151 Bacterial pre-peptidase C-terminal domain BJD11_04335 PF05658 Head domain of trimeric autotransporter adhesin BJD11_04335 PF05662 Coiled stalk of trimeric autotransporter adhesin BJD11_04335 PF13018 Extended Signal Peptide of Type V secretion system BJD11_04335 PF03895 YadA-like membrane anchor domain BJD11_04340 PF04151 Bacterial pre-peptidase C-terminal domain BJD11_04340 PF00082 Subtilase family BJD11_04345 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD11_04345 PF00437 Type II/IV secretion system protein BJD11_04355 PF00482 Type II secretion system (T2SS), protein F BJD11_04360 PF08334 Type II secretion system (T2SS), protein G BJD11_04365 PF12019 Type II transport protein GspH BJD11_04370 PF07963 Prokaryotic N-terminal methylation motif BJD11_04380 PF03934 Type II secretion system (T2SS), protein K BJD11_04385 PF05137 Fimbrial assembly protein (PilN) BJD11_04390 PF10741 Type II secretion system (T2SS), protein M subtype b BJD11_04400 PF03958 Bacterial type II/III secretion system short domain BJD11_04400 PF00263 Bacterial type II and III secretion system protein BJD11_04410 PF07702 UTRA domain BJD11_04410 PF00392 Bacterial regulatory proteins, gntR family BJD11_04420 PF07715 TonB-dependent Receptor Plug Domain BJD11_04420 PF00593 TonB dependent receptor BJD11_04460 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BJD11_04460 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BJD11_04480 PF03170 Bacterial cellulose synthase subunit BJD11_04485 PF01270 Glycosyl hydrolases family 8 BJD11_04490 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BJD11_04510 PF03960 ArsC family BJD11_04515 PF01327 Polypeptide deformylase BJD11_04520 PF02645 Uncharacterised protein, DegV family COG1307 BJD11_04545 PF01979 Amidohydrolase family BJD11_04550 PF01979 Amidohydrolase family BJD11_04565 PF00462 Glutaredoxin BJD11_04570 PF01522 Polysaccharide deacetylase BJD11_04590 PF03193 RsgA GTPase BJD11_04605 PF00128 Alpha amylase, catalytic domain BJD11_04620 PF00356 Bacterial regulatory proteins, lacI family BJD11_04625 PF00106 short chain dehydrogenase BJD11_04630 PF03600 Citrate transporter BJD11_04645 PF00072 Response regulator receiver domain BJD11_04645 PF00486 Transcriptional regulatory protein, C terminal BJD11_04650 PF08521 Two-component sensor kinase N-terminal BJD11_04650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_04650 PF00512 His Kinase A (phospho-acceptor) domain BJD11_04660 PF00196 Bacterial regulatory proteins, luxR family BJD11_04660 PF00072 Response regulator receiver domain BJD11_04675 PF00248 Aldo/keto reductase family BJD11_04685 PF03466 LysR substrate binding domain BJD11_04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_04695 PF07690 Major Facilitator Superfamily BJD11_04705 PF02743 Cache domain BJD11_04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_04705 PF00512 His Kinase A (phospho-acceptor) domain BJD11_04715 PF00375 Sodium:dicarboxylate symporter family BJD11_04720 PF03949 Malic enzyme, NAD binding domain BJD11_04720 PF01515 Phosphate acetyl/butaryl transferase BJD11_04720 PF00390 Malic enzyme, N-terminal domain BJD11_04745 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD11_04755 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BJD11_04760 PF02321 Outer membrane efflux protein BJD11_04775 PF17151 Periplasmic sensor domain BJD11_04775 PF00990 Diguanylate cyclase, GGDEF domain BJD11_04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_04785 PF00330 Aconitase family (aconitate hydratase) BJD11_04790 PF00694 Aconitase C-terminal domain BJD11_04795 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD11_04800 PF08502 LeuA allosteric (dimerisation) domain BJD11_04800 PF00682 HMGL-like BJD11_04805 PF00291 Pyridoxal-phosphate dependent enzyme BJD11_04815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD11_04815 PF00205 Thiamine pyrophosphate enzyme, central domain BJD11_04815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD11_04820 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BJD11_04820 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BJD11_04830 PF00672 HAMP domain BJD11_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_04830 PF02203 Tar ligand binding domain homologue BJD11_04835 PF07715 TonB-dependent Receptor Plug Domain BJD11_04835 PF00593 TonB dependent receptor BJD11_04845 PF13667 ThiC-associated domain BJD11_04845 PF01964 Radical SAM ThiC family BJD11_04850 PF18500 CadC C-terminal domain 1 BJD11_04850 PF00486 Transcriptional regulatory protein, C terminal BJD11_04855 PF12833 Helix-turn-helix domain BJD11_04860 PF00593 TonB dependent receptor BJD11_04860 PF07715 TonB-dependent Receptor Plug Domain BJD11_04870 PF00719 Inorganic pyrophosphatase BJD11_04880 PF03030 Inorganic H+ pyrophosphatase BJD11_04905 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD11_04920 PF13683 Integrase core domain BJD11_04920 PF13276 HTH-like domain BJD11_04935 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD11_04955 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD11_04965 PF00365 Phosphofructokinase BJD11_04975 PF02875 Mur ligase family, glutamate ligase domain BJD11_04975 PF08245 Mur ligase middle domain BJD11_04975 PF01225 Mur ligase family, catalytic domain BJD11_04985 PF01062 Bestrophin, RFP-TM, chloride channel BJD11_04990 PF01569 PAP2 superfamily BJD11_05005 PF00027 Cyclic nucleotide-binding domain BJD11_05005 PF00520 Ion transport protein BJD11_05010 PF00202 Aminotransferase class-III BJD11_05025 PF01593 Flavin containing amine oxidoreductase BJD11_05030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BJD11_05030 PF00034 Cytochrome c BJD11_05040 PF00155 Aminotransferase class I and II BJD11_05045 PF00127 Copper binding proteins, plastocyanin/azurin family BJD11_05050 PF17874 MalT-like TPR region BJD11_05050 PF00196 Bacterial regulatory proteins, luxR family BJD11_05060 PF00202 Aminotransferase class-III BJD11_05075 PF02581 Thiamine monophosphate synthase BJD11_05080 PF00301 Rubredoxin BJD11_05085 PF13369 Transglutaminase-like superfamily BJD11_05095 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BJD11_05105 PF01812 5-formyltetrahydrofolate cyclo-ligase family BJD11_05115 PF05164 Cell division protein ZapA BJD11_05125 PF03695 Uncharacterised protein family (UPF0149) BJD11_05130 PF00557 Metallopeptidase family M24 BJD11_05130 PF05195 Aminopeptidase P, N-terminal domain BJD11_05140 PF00557 Metallopeptidase family M24 BJD11_05155 PF04055 Radical SAM superfamily BJD11_05155 PF06969 HemN C-terminal domain BJD11_05160 PF01725 Ham1 family BJD11_05170 PF03725 3' exoribonuclease family, domain 2 BJD11_05170 PF01138 3' exoribonuclease family, domain 1 BJD11_05175 PF03755 YicC-like family, N-terminal region BJD11_05175 PF08340 Domain of unknown function (DUF1732) BJD11_05180 PF00625 Guanylate kinase BJD11_05185 PF01192 RNA polymerase Rpb6 BJD11_05190 PF02824 TGS domain BJD11_05190 PF04607 Region found in RelA / SpoT proteins BJD11_05190 PF13291 ACT domain BJD11_05195 PF01042 Endoribonuclease L-PSP BJD11_05200 PF00270 DEAD/DEAH box helicase BJD11_05200 PF00271 Helicase conserved C-terminal domain BJD11_05200 PF17191 RecG wedge domain BJD11_05205 PF01156 Inosine-uridine preferring nucleoside hydrolase BJD11_05210 PF01197 Ribosomal protein L31 BJD11_05215 PF00285 Citrate synthase, C-terminal domain BJD11_05230 PF00905 Penicillin binding protein transpeptidase domain BJD11_05230 PF00912 Transglycosylase BJD11_05230 PF17092 Penicillin-binding protein OB-like domain BJD11_05255 PF11741 AMIN domain BJD11_05255 PF07660 Secretin and TonB N terminus short domain BJD11_05255 PF03958 Bacterial type II/III secretion system short domain BJD11_05255 PF00263 Bacterial type II and III secretion system protein BJD11_05260 PF17863 AAA lid domain BJD11_05260 PF07726 ATPase family associated with various cellular activities (AAA) BJD11_05280 PF07584 Aerotolerance regulator N-terminal BJD11_05280 PF00092 von Willebrand factor type A domain BJD11_05290 PF00375 Sodium:dicarboxylate symporter family BJD11_05295 PF00456 Transketolase, thiamine diphosphate binding domain BJD11_05295 PF02779 Transketolase, pyrimidine binding domain BJD11_05295 PF02780 Transketolase, C-terminal domain BJD11_05300 PF00593 TonB dependent receptor BJD11_05300 PF07715 TonB-dependent Receptor Plug Domain BJD11_05305 PF01551 Peptidase family M23 BJD11_05305 PF04225 Opacity-associated protein A LysM-like domain BJD11_05310 PF03734 L,D-transpeptidase catalytic domain BJD11_05310 PF01476 LysM domain BJD11_05345 PF03459 TOBE domain BJD11_05345 PF00005 ABC transporter BJD11_05350 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_05360 PF00753 Metallo-beta-lactamase superfamily BJD11_05360 PF04273 Putative phosphatase (DUF442) BJD11_05370 PF03922 OmpW family BJD11_05375 PF03922 OmpW family BJD11_05385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD11_05385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD11_05410 PF00162 Phosphoglycerate kinase BJD11_05420 PF00224 Pyruvate kinase, barrel domain BJD11_05420 PF02887 Pyruvate kinase, alpha/beta domain BJD11_05425 PF00274 Fructose-bisphosphate aldolase class-I BJD11_05430 PF01661 Macro domain BJD11_05440 PF00291 Pyridoxal-phosphate dependent enzyme BJD11_05445 PF14824 Sirohaem biosynthesis protein central BJD11_05445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD11_05445 PF10414 Sirohaem synthase dimerisation region BJD11_05450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_05450 PF03466 LysR substrate binding domain BJD11_05470 PF00512 His Kinase A (phospho-acceptor) domain BJD11_05470 PF00072 Response regulator receiver domain BJD11_05470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_05470 PF01627 Hpt domain BJD11_05490 PF01507 Phosphoadenosine phosphosulfate reductase family BJD11_05495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD11_05495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD11_05500 PF00258 Flavodoxin BJD11_05500 PF00175 Oxidoreductase NAD-binding domain BJD11_05500 PF00667 FAD binding domain BJD11_05505 PF01507 Phosphoadenosine phosphosulfate reductase family BJD11_05510 PF00009 Elongation factor Tu GTP binding domain BJD11_05520 PF00529 HlyD membrane-fusion protein of T1SS BJD11_05520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_05525 PF00873 AcrB/AcrD/AcrF family BJD11_05555 PF01433 Peptidase family M1 domain BJD11_05555 PF11838 ERAP1-like C-terminal domain BJD11_05570 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD11_05570 PF00588 SpoU rRNA Methylase family BJD11_05575 PF00135 Carboxylesterase family BJD11_05585 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BJD11_05585 PF14508 Glycosyl-hydrolase 97 N-terminal BJD11_05585 PF10566 Glycoside hydrolase 97 BJD11_05590 PF00703 Glycosyl hydrolases family 2 BJD11_05590 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD11_05590 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain BJD11_05600 PF00356 Bacterial regulatory proteins, lacI family BJD11_05615 PF01741 Large-conductance mechanosensitive channel, MscL BJD11_05620 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD11_05640 PF03600 Citrate transporter BJD11_05640 PF02080 TrkA-C domain BJD11_05650 PF05690 Thiazole biosynthesis protein ThiG BJD11_05680 PF13276 HTH-like domain BJD11_05680 PF00665 Integrase core domain BJD11_05680 PF13333 Integrase core domain BJD11_05705 PF13683 Integrase core domain BJD11_05705 PF13276 HTH-like domain BJD11_05710 PF01527 Transposase BJD11_05730 PF13276 HTH-like domain BJD11_05730 PF13333 Integrase core domain BJD11_05730 PF00665 Integrase core domain BJD11_05765 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD11_05815 PF13683 Integrase core domain BJD11_05815 PF13276 HTH-like domain BJD11_05820 PF13683 Integrase core domain BJD11_05820 PF13276 HTH-like domain BJD11_05825 PF01527 Transposase BJD11_05830 PF01527 Transposase BJD11_05845 PF13276 HTH-like domain BJD11_05845 PF00665 Integrase core domain BJD11_05845 PF13333 Integrase core domain BJD11_05880 PF13683 Integrase core domain BJD11_05880 PF13276 HTH-like domain BJD11_05930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD11_05930 PF00128 Alpha amylase, catalytic domain BJD11_05935 PF08443 RimK-like ATP-grasp domain BJD11_05935 PF18030 RimK PreATP-grasp domain BJD11_05945 PF00486 Transcriptional regulatory protein, C terminal BJD11_05945 PF00072 Response regulator receiver domain BJD11_05950 PF11808 Phosphate regulon sensor protein PhoR BJD11_05950 PF00989 PAS fold BJD11_05950 PF00512 His Kinase A (phospho-acceptor) domain BJD11_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_05960 PF13276 HTH-like domain BJD11_05960 PF13683 Integrase core domain BJD11_05965 PF01527 Transposase BJD11_05985 PF01121 Dephospho-CoA kinase BJD11_05990 PF06750 Bacterial Peptidase A24 N-terminal domain BJD11_05990 PF01478 Type IV leader peptidase family BJD11_05995 PF00482 Type II secretion system (T2SS), protein F BJD11_06000 PF07963 Prokaryotic N-terminal methylation motif BJD11_06000 PF00114 Pilin (bacterial filament) BJD11_06005 PF00437 Type II/IV secretion system protein BJD11_06005 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD11_06010 PF00072 Response regulator receiver domain BJD11_06010 PF02954 Bacterial regulatory protein, Fis family BJD11_06010 PF00158 Sigma-54 interaction domain BJD11_06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_06020 PF00512 His Kinase A (phospho-acceptor) domain BJD11_06025 PF00549 CoA-ligase BJD11_06025 PF08442 ATP-grasp domain BJD11_06030 PF02629 CoA binding domain BJD11_06030 PF00549 CoA-ligase BJD11_06045 PF00795 Carbon-nitrogen hydrolase BJD11_06045 PF02540 NAD synthase BJD11_06055 PF13525 Outer membrane lipoprotein BJD11_06060 PF00849 RNA pseudouridylate synthase BJD11_06075 PF04134 Protein of unknown function, DUF393 BJD11_06080 PF00672 HAMP domain BJD11_06080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_06080 PF02203 Tar ligand binding domain homologue BJD11_06085 PF01011 PQQ enzyme repeat BJD11_06090 PF00982 Glycosyltransferase family 20 BJD11_06095 PF00723 Glycosyl hydrolases family 15 BJD11_06100 PF02358 Trehalose-phosphatase BJD11_06105 PF00593 TonB dependent receptor BJD11_06105 PF07715 TonB-dependent Receptor Plug Domain BJD11_06140 PF01541 GIY-YIG catalytic domain BJD11_06150 PF10431 C-terminal, D2-small domain, of ClpB protein BJD11_06150 PF02861 Clp amino terminal domain, pathogenicity island component BJD11_06150 PF17871 AAA lid domain BJD11_06150 PF07724 AAA domain (Cdc48 subfamily) BJD11_06150 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_06155 PF00593 TonB dependent receptor BJD11_06155 PF07715 TonB-dependent Receptor Plug Domain BJD11_06170 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BJD11_06170 PF12557 Cob(I)alamin adenosyltransferase N terminal BJD11_06175 PF03186 CobD/Cbib protein BJD11_06175 PF17113 Regulatory signalling modulator protein AmpE BJD11_06180 PF00155 Aminotransferase class I and II BJD11_06190 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BJD11_06195 PF02277 Phosphoribosyltransferase BJD11_06205 PF02654 Cobalamin-5-phosphate synthase BJD11_06215 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD11_06215 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BJD11_06225 PF07690 Major Facilitator Superfamily BJD11_06230 PF04183 IucA / IucC family BJD11_06230 PF06276 Ferric iron reductase FhuF-like transporter BJD11_06240 PF07660 Secretin and TonB N terminus short domain BJD11_06240 PF07715 TonB-dependent Receptor Plug Domain BJD11_06240 PF00593 TonB dependent receptor BJD11_06250 PF00999 Sodium/hydrogen exchanger family BJD11_06250 PF02254 TrkA-N domain BJD11_06260 PF00067 Cytochrome P450 BJD11_06265 PF00593 TonB dependent receptor BJD11_06265 PF07715 TonB-dependent Receptor Plug Domain BJD11_06270 PF07715 TonB-dependent Receptor Plug Domain BJD11_06270 PF00593 TonB dependent receptor BJD11_06280 PF07715 TonB-dependent Receptor Plug Domain BJD11_06280 PF00593 TonB dependent receptor BJD11_06285 PF12848 ABC transporter BJD11_06285 PF00005 ABC transporter BJD11_06295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_06295 PF03466 LysR substrate binding domain BJD11_06310 PF04185 Phosphoesterase family BJD11_06310 PF05506 Domain of unknown function (DUF756) BJD11_06325 PF07690 Major Facilitator Superfamily BJD11_06340 PF00152 tRNA synthetases class II (D, K and N) BJD11_06340 PF01336 OB-fold nucleic acid binding domain BJD11_06340 PF02938 GAD domain BJD11_06355 PF01709 Transcriptional regulator BJD11_06360 PF02075 Crossover junction endodeoxyribonuclease RuvC BJD11_06365 PF01330 RuvA N terminal domain BJD11_06365 PF07499 RuvA, C-terminal domain BJD11_06370 PF02705 K+ potassium transporter BJD11_06380 PF05496 Holliday junction DNA helicase RuvB P-loop domain BJD11_06380 PF17864 RuvB AAA lid domain BJD11_06380 PF05491 RuvB C-terminal winged helix domain BJD11_06385 PF03061 Thioesterase superfamily BJD11_06390 PF01618 MotA/TolQ/ExbB proton channel family BJD11_06395 PF02472 Biopolymer transport protein ExbD/TolR BJD11_06405 PF04052 TolB amino-terminal domain BJD11_06405 PF07676 WD40-like Beta Propeller Repeat BJD11_06410 PF00691 OmpA family BJD11_06420 PF04055 Radical SAM superfamily BJD11_06430 PF06508 Queuosine biosynthesis protein QueC BJD11_06435 PF07536 HWE histidine kinase BJD11_06435 PF13581 Histidine kinase-like ATPase domain BJD11_06435 PF13426 PAS domain BJD11_06455 PF00672 HAMP domain BJD11_06455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_06455 PF02203 Tar ligand binding domain homologue BJD11_06460 PF05598 Transposase domain (DUF772) BJD11_06460 PF01609 Transposase DDE domain BJD11_06470 PF00849 RNA pseudouridylate synthase BJD11_06470 PF01479 S4 domain BJD11_06500 PF09382 RQC domain BJD11_06500 PF00270 DEAD/DEAH box helicase BJD11_06500 PF00570 HRDC domain BJD11_06500 PF16124 RecQ zinc-binding BJD11_06500 PF00271 Helicase conserved C-terminal domain BJD11_06505 PF00210 Ferritin-like domain BJD11_06510 PF00271 Helicase conserved C-terminal domain BJD11_06510 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BJD11_06510 PF00270 DEAD/DEAH box helicase BJD11_06510 PF11898 Domain of unknown function (DUF3418) BJD11_06510 PF04408 Helicase associated domain (HA2) BJD11_06520 PF02685 Glucokinase BJD11_06540 PF04055 Radical SAM superfamily BJD11_06540 PF13186 Iron-sulfur cluster-binding domain BJD11_06545 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BJD11_06550 PF03070 TENA/THI-4/PQQC family BJD11_06555 PF12706 Beta-lactamase superfamily domain BJD11_06560 PF08042 PqqA family BJD11_06565 PF04607 Region found in RelA / SpoT proteins BJD11_06565 PF13291 ACT domain BJD11_06565 PF02824 TGS domain BJD11_06580 PF00535 Glycosyl transferase family 2 BJD11_06585 PF00912 Transglycosylase BJD11_06585 PF00905 Penicillin binding protein transpeptidase domain BJD11_06585 PF14814 Bifunctional transglycosylase second domain BJD11_06595 PF04851 Type III restriction enzyme, res subunit BJD11_06595 PF13307 Helicase C-terminal domain BJD11_06600 PF00814 Glycoprotease family BJD11_06625 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BJD11_06625 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BJD11_06630 PF00072 Response regulator receiver domain BJD11_06635 PF00072 Response regulator receiver domain BJD11_06640 PF01584 CheW-like domain BJD11_06645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_06645 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BJD11_06650 PF01584 CheW-like domain BJD11_06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_06650 PF01627 Hpt domain BJD11_06650 PF00072 Response regulator receiver domain BJD11_06665 PF13302 Acetyltransferase (GNAT) domain BJD11_06685 PF08281 Sigma-70, region 4 BJD11_06685 PF04542 Sigma-70 region 2 BJD11_06690 PF12450 von Willebrand factor BJD11_06690 PF12034 Domain of unknown function (DUF3520) BJD11_06690 PF00092 von Willebrand factor type A domain BJD11_06695 PF01112 Asparaginase BJD11_06700 PF03932 CutC family BJD11_06740 PF01301 Glycosyl hydrolases family 35 BJD11_06745 PF07971 Glycosyl hydrolase family 92 BJD11_06745 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD11_06755 PF14310 Fibronectin type III-like domain BJD11_06755 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD11_06755 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD11_06755 PF07691 PA14 domain BJD11_06765 PF00728 Glycosyl hydrolase family 20, catalytic domain BJD11_06765 PF07691 PA14 domain BJD11_06765 PF02838 Glycosyl hydrolase family 20, domain 2 BJD11_06770 PF01476 LysM domain BJD11_06770 PF00704 Glycosyl hydrolases family 18 BJD11_06785 PF02685 Glucokinase BJD11_06790 PF04452 RNA methyltransferase BJD11_06795 PF00202 Aminotransferase class-III BJD11_06800 PF00293 NUDIX domain BJD11_06805 PF00459 Inositol monophosphatase family BJD11_06810 PF03819 MazG nucleotide pyrophosphohydrolase domain BJD11_06815 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BJD11_06825 PF08669 Glycine cleavage T-protein C-terminal barrel domain BJD11_06825 PF01571 Aminomethyltransferase folate-binding domain BJD11_06830 PF01597 Glycine cleavage H-protein BJD11_06855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD11_06855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD11_06855 PF09317 Domain of unknown function (DUF1974) BJD11_06860 PF00561 alpha/beta hydrolase fold BJD11_06865 PF00440 Bacterial regulatory proteins, tetR family BJD11_06870 PF00593 TonB dependent receptor BJD11_06870 PF07715 TonB-dependent Receptor Plug Domain BJD11_06880 PF01430 Hsp33 protein BJD11_06885 PF00912 Transglycosylase BJD11_06890 PF00535 Glycosyl transferase family 2 BJD11_06895 PF00478 IMP dehydrogenase / GMP reductase domain BJD11_06895 PF00571 CBS domain BJD11_06900 PF05170 AsmA family BJD11_06905 PF03006 Haemolysin-III related BJD11_06910 PF16658 Class II release factor RF3, C-terminal domain BJD11_06910 PF00009 Elongation factor Tu GTP binding domain BJD11_06915 PF08525 Opacity-associated protein A N-terminal motif BJD11_06915 PF01551 Peptidase family M23 BJD11_06915 PF01476 LysM domain BJD11_06920 PF00561 alpha/beta hydrolase fold BJD11_06925 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD11_06930 PF00742 Homoserine dehydrogenase BJD11_06930 PF00696 Amino acid kinase family BJD11_06930 PF03447 Homoserine dehydrogenase, NAD binding domain BJD11_06935 PF00561 alpha/beta hydrolase fold BJD11_06940 PF03313 Serine dehydratase alpha chain BJD11_06940 PF03315 Serine dehydratase beta chain BJD11_06960 PF04264 YceI-like domain BJD11_06965 PF01627 Hpt domain BJD11_06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_06965 PF00512 His Kinase A (phospho-acceptor) domain BJD11_06965 PF00072 Response regulator receiver domain BJD11_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_06975 PF00072 Response regulator receiver domain BJD11_06975 PF00672 HAMP domain BJD11_06975 PF00512 His Kinase A (phospho-acceptor) domain BJD11_06975 PF01627 Hpt domain BJD11_06975 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD11_06980 PF00072 Response regulator receiver domain BJD11_06980 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD11_06980 PF00672 HAMP domain BJD11_06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_06980 PF01627 Hpt domain BJD11_06980 PF00512 His Kinase A (phospho-acceptor) domain BJD11_06985 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD11_06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_06985 PF00072 Response regulator receiver domain BJD11_06985 PF01627 Hpt domain BJD11_06985 PF00512 His Kinase A (phospho-acceptor) domain BJD11_06985 PF00672 HAMP domain BJD11_06990 PF07690 Major Facilitator Superfamily BJD11_06995 PF01208 Uroporphyrinogen decarboxylase (URO-D) BJD11_07005 PF01761 3-dehydroquinate synthase BJD11_07010 PF01202 Shikimate kinase BJD11_07015 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BJD11_07015 PF01243 Pyridoxamine 5'-phosphate oxidase BJD11_07025 PF04012 PspA/IM30 family BJD11_07050 PF03738 Glutathionylspermidine synthase preATP-grasp BJD11_07055 PF07690 Major Facilitator Superfamily BJD11_07060 PF00376 MerR family regulatory protein BJD11_07060 PF09278 MerR, DNA binding BJD11_07105 PF12706 Beta-lactamase superfamily domain BJD11_07135 PF00324 Amino acid permease BJD11_07140 PF00196 Bacterial regulatory proteins, luxR family BJD11_07150 PF00561 alpha/beta hydrolase fold BJD11_07165 PF00324 Amino acid permease BJD11_07175 PF01654 Cytochrome bd terminal oxidase subunit I BJD11_07180 PF02322 Cytochrome bd terminal oxidase subunit II BJD11_07185 PF00756 Putative esterase BJD11_07190 PF03448 MgtE intracellular N domain BJD11_07190 PF00571 CBS domain BJD11_07190 PF01769 Divalent cation transporter BJD11_07200 PF05524 PEP-utilising enzyme, N-terminal BJD11_07200 PF00391 PEP-utilising enzyme, mobile domain BJD11_07200 PF02896 PEP-utilising enzyme, TIM barrel domain BJD11_07205 PF00381 PTS HPr component phosphorylation site BJD11_07215 PF03668 P-loop ATPase protein family BJD11_07220 PF02603 HPr Serine kinase N terminus BJD11_07220 PF07475 HPr Serine kinase C-terminal domain BJD11_07225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD11_07230 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BJD11_07235 PF04552 Sigma-54, DNA binding domain BJD11_07235 PF04963 Sigma-54 factor, core binding domain BJD11_07235 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD11_07240 PF00005 ABC transporter BJD11_07245 PF03968 OstA-like protein BJD11_07260 PF00571 CBS domain BJD11_07260 PF01380 SIS domain BJD11_07265 PF01722 BolA-like protein BJD11_07270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD11_07295 PF00551 Formyl transferase BJD11_07305 PF02769 AIR synthase related protein, C-terminal domain BJD11_07305 PF00586 AIR synthase related protein, N-terminal domain BJD11_07315 PF01594 AI-2E family transporter BJD11_07320 PF00308 Bacterial dnaA protein BJD11_07325 PF00483 Nucleotidyl transferase BJD11_07330 PF01636 Phosphotransferase enzyme family BJD11_07360 PF00258 Flavodoxin BJD11_07360 PF00175 Oxidoreductase NAD-binding domain BJD11_07360 PF00667 FAD binding domain BJD11_07365 PF02424 ApbE family BJD11_07390 PF13640 2OG-Fe(II) oxygenase superfamily BJD11_07390 PF18331 PKHD-type hydroxylase C-terminal domain BJD11_07395 PF00593 TonB dependent receptor BJD11_07395 PF07715 TonB-dependent Receptor Plug Domain BJD11_07405 PF00355 Rieske [2Fe-2S] domain BJD11_07415 PF00266 Aminotransferase class-V BJD11_07420 PF01458 Uncharacterized protein family (UPF0051) BJD11_07425 PF00005 ABC transporter BJD11_07430 PF01458 Uncharacterized protein family (UPF0051) BJD11_07435 PF02082 Transcriptional regulator BJD11_07445 PF01965 DJ-1/PfpI family BJD11_07465 PF01551 Peptidase family M23 BJD11_07475 PF14748 Pyrroline-5-carboxylate reductase dimerisation BJD11_07475 PF03807 NADP oxidoreductase coenzyme F420-dependent BJD11_07480 PF01168 Alanine racemase, N-terminal domain BJD11_07485 PF00437 Type II/IV secretion system protein BJD11_07490 PF00437 Type II/IV secretion system protein BJD11_07505 PF00958 GMP synthase C terminal domain BJD11_07505 PF00117 Glutamine amidotransferase class-I BJD11_07505 PF03352 Methyladenine glycosylase BJD11_07505 PF13673 Acetyltransferase (GNAT) domain BJD11_07505 PF13302 Acetyltransferase (GNAT) domain BJD11_07515 PF02622 Uncharacterized ACR, COG1678 BJD11_07520 PF03652 Holliday junction resolvase BJD11_07525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD11_07525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD11_07530 PF02566 OsmC-like protein BJD11_07540 PF02567 Phenazine biosynthesis-like protein BJD11_07545 PF02567 Phenazine biosynthesis-like protein BJD11_07550 PF01842 ACT domain BJD11_07550 PF00696 Amino acid kinase family BJD11_07565 PF02875 Mur ligase family, glutamate ligase domain BJD11_07565 PF08245 Mur ligase middle domain BJD11_07580 PF00348 Polyprenyl synthetase BJD11_07585 PF00436 Single-strand binding protein family BJD11_07590 PF01590 GAF domain BJD11_07590 PF00563 EAL domain BJD11_07590 PF00360 Phytochrome region BJD11_07590 PF00990 Diguanylate cyclase, GGDEF domain BJD11_07595 PF16197 Ketoacyl-synthetase C-terminal extension BJD11_07595 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD11_07595 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_07595 PF14765 Polyketide synthase dehydratase BJD11_07595 PF00550 Phosphopantetheine attachment site BJD11_07595 PF08659 KR domain BJD11_07595 PF00107 Zinc-binding dehydrogenase BJD11_07595 PF00698 Acyl transferase domain BJD11_07595 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD11_07600 PF10518 TAT (twin-arginine translocation) pathway signal sequence BJD11_07600 PF01799 [2Fe-2S] binding domain BJD11_07600 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD11_07605 PF00941 FAD binding domain in molybdopterin dehydrogenase BJD11_07605 PF03450 CO dehydrogenase flavoprotein C-terminal domain BJD11_07610 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD11_07610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD11_07615 PF02625 XdhC and CoxI family BJD11_07615 PF13478 XdhC Rossmann domain BJD11_07665 PF04328 Selenoprotein, putative BJD11_07670 PF02554 Carbon starvation protein CstA BJD11_07670 PF13722 5TM C-terminal transporter carbon starvation CstA BJD11_07675 PF05726 Pirin C-terminal cupin domain BJD11_07675 PF02678 Pirin BJD11_07690 PF02678 Pirin BJD11_07690 PF05726 Pirin C-terminal cupin domain BJD11_07700 PF04493 Endonuclease V BJD11_07705 PF00300 Histidine phosphatase superfamily (branch 1) BJD11_07720 PF05649 Peptidase family M13 BJD11_07720 PF01431 Peptidase family M13 BJD11_07725 PF13091 PLD-like domain BJD11_07730 PF00072 Response regulator receiver domain BJD11_07730 PF01339 CheB methylesterase BJD11_07735 PF03705 CheR methyltransferase, all-alpha domain BJD11_07735 PF01739 CheR methyltransferase, SAM binding domain BJD11_07740 PF00563 EAL domain BJD11_07740 PF13426 PAS domain BJD11_07740 PF00990 Diguanylate cyclase, GGDEF domain BJD11_07745 PF01584 CheW-like domain BJD11_07750 PF02203 Tar ligand binding domain homologue BJD11_07750 PF00672 HAMP domain BJD11_07750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_07760 PF01627 Hpt domain BJD11_07760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_07760 PF09078 CheY binding BJD11_07760 PF01584 CheW-like domain BJD11_07760 PF02895 Signal transducing histidine kinase, homodimeric domain BJD11_07770 PF17757 UvrB interaction domain BJD11_07770 PF02559 CarD-like/TRCF domain BJD11_07770 PF03461 TRCF domain BJD11_07770 PF00270 DEAD/DEAH box helicase BJD11_07770 PF00271 Helicase conserved C-terminal domain BJD11_07780 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BJD11_07785 PF00072 Response regulator receiver domain BJD11_07785 PF00486 Transcriptional regulatory protein, C terminal BJD11_07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_07790 PF00672 HAMP domain BJD11_07790 PF00512 His Kinase A (phospho-acceptor) domain BJD11_07805 PF06123 Inner membrane protein CreD BJD11_07830 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD11_07835 PF01475 Ferric uptake regulator family BJD11_07845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_07845 PF00529 HlyD membrane-fusion protein of T1SS BJD11_07850 PF00873 AcrB/AcrD/AcrF family BJD11_07855 PF02321 Outer membrane efflux protein BJD11_07860 PF16859 Tetracyclin repressor-like, C-terminal domain BJD11_07860 PF00440 Bacterial regulatory proteins, tetR family BJD11_07865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_07865 PF03466 LysR substrate binding domain BJD11_07875 PF06719 AraC-type transcriptional regulator N-terminus BJD11_07875 PF12833 Helix-turn-helix domain BJD11_07885 PF03466 LysR substrate binding domain BJD11_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_07890 PF07690 Major Facilitator Superfamily BJD11_07895 PF00248 Aldo/keto reductase family BJD11_07905 PF00082 Subtilase family BJD11_07905 PF01483 Proprotein convertase P-domain BJD11_07915 PF00593 TonB dependent receptor BJD11_07915 PF07715 TonB-dependent Receptor Plug Domain BJD11_07935 PF00654 Voltage gated chloride channel BJD11_07945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BJD11_07945 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BJD11_07950 PF06029 AlkA N-terminal domain BJD11_07950 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD11_07990 PF04542 Sigma-70 region 2 BJD11_07990 PF04545 Sigma-70, region 4 BJD11_07990 PF04539 Sigma-70 region 3 BJD11_07995 PF03880 DbpA RNA binding domain BJD11_07995 PF00270 DEAD/DEAH box helicase BJD11_07995 PF00271 Helicase conserved C-terminal domain BJD11_08000 PF00563 EAL domain BJD11_08000 PF00990 Diguanylate cyclase, GGDEF domain BJD11_08000 PF08448 PAS fold BJD11_08005 PF00849 RNA pseudouridylate synthase BJD11_08005 PF01479 S4 domain BJD11_08010 PF08448 PAS fold BJD11_08010 PF00990 Diguanylate cyclase, GGDEF domain BJD11_08030 PF03737 Aldolase/RraA BJD11_08035 PF00144 Beta-lactamase BJD11_08040 PF00999 Sodium/hydrogen exchanger family BJD11_08050 PF00072 Response regulator receiver domain BJD11_08050 PF00486 Transcriptional regulatory protein, C terminal BJD11_08055 PF02321 Outer membrane efflux protein BJD11_08070 PF00873 AcrB/AcrD/AcrF family BJD11_08080 PF00005 ABC transporter BJD11_08080 PF00664 ABC transporter transmembrane region BJD11_08110 PF01022 Bacterial regulatory protein, arsR family BJD11_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_08115 PF03466 LysR substrate binding domain BJD11_08125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD11_08130 PF04070 Domain of unknown function (DUF378) BJD11_08160 PF00085 Thioredoxin BJD11_08170 PF08264 Anticodon-binding domain of tRNA BJD11_08170 PF00133 tRNA synthetases class I (I, L, M and V) BJD11_08170 PF13603 Leucyl-tRNA synthetase, Domain 2 BJD11_08190 PF01467 Cytidylyltransferase-like BJD11_08205 PF02590 Predicted SPOUT methyltransferase BJD11_08215 PF04402 Protein of unknown function (DUF541) BJD11_08220 PF02545 Maf-like protein BJD11_08225 PF10150 Ribonuclease E/G family BJD11_08225 PF00575 S1 RNA binding domain BJD11_08230 PF13116 Protein of unknown function BJD11_08230 PF13502 AsmA-like C-terminal region BJD11_08240 PF01523 Putative modulator of DNA gyrase BJD11_08245 PF04751 Protein of unknown function (DUF615) BJD11_08250 PF01523 Putative modulator of DNA gyrase BJD11_08260 PF14521 Lysine-specific metallo-endopeptidase BJD11_08265 PF00348 Polyprenyl synthetase BJD11_08270 PF02609 Exonuclease VII small subunit BJD11_08275 PF09179 TilS substrate binding domain BJD11_08275 PF11734 TilS substrate C-terminal domain BJD11_08275 PF01171 PP-loop family BJD11_08285 PF00245 Alkaline phosphatase BJD11_08290 PF00375 Sodium:dicarboxylate symporter family BJD11_08295 PF13649 Methyltransferase domain BJD11_08305 PF00877 NlpC/P60 family BJD11_08310 PF00877 NlpC/P60 family BJD11_08315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD11_08320 PF04235 Protein of unknown function (DUF418) BJD11_08325 PF01266 FAD dependent oxidoreductase BJD11_08330 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_08330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD11_08350 PF01431 Peptidase family M13 BJD11_08350 PF05649 Peptidase family M13 BJD11_08360 PF01431 Peptidase family M13 BJD11_08360 PF05649 Peptidase family M13 BJD11_08375 PF00593 TonB dependent receptor BJD11_08375 PF07715 TonB-dependent Receptor Plug Domain BJD11_08380 PF10609 NUBPL iron-transfer P-loop NTPase BJD11_08390 PF00692 dUTPase BJD11_08410 PF01738 Dienelactone hydrolase family BJD11_08415 PF18693 TRAM domain BJD11_08415 PF04055 Radical SAM superfamily BJD11_08415 PF00919 Uncharacterized protein family UPF0004 BJD11_08420 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD11_08420 PF03449 Transcription elongation factor, N-terminal BJD11_08435 PF00293 NUDIX domain BJD11_08440 PF05872 Bacterial protein of unknown function (DUF853) BJD11_08450 PF02666 Phosphatidylserine decarboxylase BJD11_08455 PF02630 SCO1/SenC BJD11_08460 PF05175 Methyltransferase small domain BJD11_08465 PF01264 Chorismate synthase BJD11_08470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD11_08470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD11_08475 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD11_08475 PF02774 Semialdehyde dehydrogenase, dimerisation domain BJD11_08495 PF01416 tRNA pseudouridine synthase BJD11_08500 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BJD11_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_08505 PF03466 LysR substrate binding domain BJD11_08510 PF00291 Pyridoxal-phosphate dependent enzyme BJD11_08525 PF13333 Integrase core domain BJD11_08525 PF00665 Integrase core domain BJD11_08525 PF13276 HTH-like domain BJD11_08535 PF00290 Tryptophan synthase alpha chain BJD11_08540 PF17848 Acetyl-coA carboxylase zinc finger domain BJD11_08540 PF01039 Carboxyl transferase domain BJD11_08545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD11_08545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD11_08545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD11_08545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD11_08565 PF03707 Bacterial signalling protein N terminal repeat BJD11_08565 PF00990 Diguanylate cyclase, GGDEF domain BJD11_08565 PF00563 EAL domain BJD11_08585 PF00106 short chain dehydrogenase BJD11_08590 PF00121 Triosephosphate isomerase BJD11_08605 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BJD11_08610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BJD11_08615 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BJD11_08620 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BJD11_08630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BJD11_08630 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BJD11_08630 PF10531 SLBB domain BJD11_08635 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BJD11_08635 PF00384 Molybdopterin oxidoreductase BJD11_08635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BJD11_08640 PF00146 NADH dehydrogenase BJD11_08645 PF12838 4Fe-4S dicluster domain BJD11_08650 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BJD11_08655 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BJD11_08660 PF00361 Proton-conducting membrane transporter BJD11_08660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD11_08665 PF00361 Proton-conducting membrane transporter BJD11_08665 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BJD11_08670 PF00361 Proton-conducting membrane transporter BJD11_08680 PF17384 RimP C-terminal SH3 domain BJD11_08680 PF02576 RimP N-terminal domain BJD11_08685 PF08529 NusA N-terminal domain BJD11_08685 PF00575 S1 RNA binding domain BJD11_08685 PF13184 NusA-like KH domain BJD11_08690 PF11987 Translation-initiation factor 2 BJD11_08690 PF00009 Elongation factor Tu GTP binding domain BJD11_08690 PF04760 Translation initiation factor IF-2, N-terminal region BJD11_08690 PF08364 Bacterial translation initiation factor IF-2 associated region BJD11_08695 PF02033 Ribosome-binding factor A BJD11_08700 PF01509 TruB family pseudouridylate synthase (N terminal domain) BJD11_08700 PF16198 tRNA pseudouridylate synthase B C-terminal domain BJD11_08700 PF09157 Pseudouridine synthase II TruB, C-terminal BJD11_08705 PF00312 Ribosomal protein S15 BJD11_08710 PF01138 3' exoribonuclease family, domain 1 BJD11_08710 PF03725 3' exoribonuclease family, domain 2 BJD11_08710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BJD11_08710 PF00575 S1 RNA binding domain BJD11_08710 PF00013 KH domain BJD11_08720 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BJD11_08720 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BJD11_08730 PF00731 AIR carboxylase BJD11_08735 PF02222 ATP-grasp domain BJD11_08735 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BJD11_08740 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD11_08740 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD11_08745 PF00462 Glutaredoxin BJD11_08755 PF01914 MarC family integral membrane protein BJD11_08760 PF00593 TonB dependent receptor BJD11_08765 PF03641 Possible lysine decarboxylase BJD11_08765 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BJD11_08765 PF11892 Domain of unknown function (DUF3412) BJD11_08770 PF07963 Prokaryotic N-terminal methylation motif BJD11_08770 PF00114 Pilin (bacterial filament) BJD11_08790 PF05567 Neisseria PilC beta-propeller domain BJD11_08810 PF17757 UvrB interaction domain BJD11_08810 PF12344 Ultra-violet resistance protein B BJD11_08810 PF00271 Helicase conserved C-terminal domain BJD11_08810 PF02151 UvrB/uvrC motif BJD11_08810 PF04851 Type III restriction enzyme, res subunit BJD11_08830 PF02534 Type IV secretory system Conjugative DNA transfer BJD11_08850 PF03743 Bacterial conjugation TrbI-like protein BJD11_08855 PF00437 Type II/IV secretion system protein BJD11_08860 PF01464 Transglycosylase SLT domain BJD11_08870 PF05101 Type IV secretory pathway, VirB3-like protein BJD11_08875 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BJD11_08885 PF00128 Alpha amylase, catalytic domain BJD11_08900 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BJD11_08900 PF10566 Glycoside hydrolase 97 BJD11_08900 PF14508 Glycosyl-hydrolase 97 N-terminal BJD11_08910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BJD11_08915 PF00128 Alpha amylase, catalytic domain BJD11_08915 PF00686 Starch binding domain BJD11_08920 PF00356 Bacterial regulatory proteins, lacI family BJD11_08925 PF02824 TGS domain BJD11_08925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD11_08925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD11_08925 PF03129 Anticodon binding domain BJD11_08930 PF00707 Translation initiation factor IF-3, C-terminal domain BJD11_08930 PF05198 Translation initiation factor IF-3, N-terminal domain BJD11_08935 PF01632 Ribosomal protein L35 BJD11_08940 PF00453 Ribosomal protein L20 BJD11_08945 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BJD11_08945 PF01409 tRNA synthetases class II core domain (F) BJD11_08950 PF01588 Putative tRNA binding domain BJD11_08950 PF03147 Ferredoxin-fold anticodon binding domain BJD11_08950 PF03484 tRNA synthetase B5 domain BJD11_08950 PF03483 B3/4 domain BJD11_08950 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BJD11_08955 PF00216 Bacterial DNA-binding protein BJD11_08960 PF13411 MerR HTH family regulatory protein BJD11_08980 PF02397 Bacterial sugar transferase BJD11_09000 PF13439 Glycosyltransferase Family 4 BJD11_09000 PF00534 Glycosyl transferases group 1 BJD11_09010 PF14667 Polysaccharide biosynthesis C-terminal domain BJD11_09025 PF03808 Glycosyl transferase WecB/TagA/CpsF family BJD11_09040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD11_09040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD11_09045 PF16123 Hydroxyacylglutathione hydrolase C-terminus BJD11_09045 PF00753 Metallo-beta-lactamase superfamily BJD11_09050 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BJD11_09070 PF02779 Transketolase, pyrimidine binding domain BJD11_09070 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BJD11_09070 PF02780 Transketolase, C-terminal domain BJD11_09080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD11_09080 PF12806 Acetyl-CoA dehydrogenase C-terminal like BJD11_09080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD11_09080 PF02770 Acyl-CoA dehydrogenase, middle domain BJD11_09090 PF08212 Lipocalin-like domain BJD11_09120 PF13426 PAS domain BJD11_09120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_09120 PF00072 Response regulator receiver domain BJD11_09125 PF04362 Bacterial Fe(2+) trafficking BJD11_09130 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD11_09130 PF14815 NUDIX domain BJD11_09130 PF10576 Iron-sulfur binding domain of endonuclease III BJD11_09130 PF00633 Helix-hairpin-helix motif BJD11_09135 PF02881 SRP54-type protein, helical bundle domain BJD11_09135 PF00448 SRP54-type protein, GTPase domain BJD11_09145 PF05544 Proline racemase BJD11_09150 PF01266 FAD dependent oxidoreductase BJD11_09160 PF04324 BFD-like [2Fe-2S] binding domain BJD11_09160 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_09165 PF00701 Dihydrodipicolinate synthetase family BJD11_09170 PF00171 Aldehyde dehydrogenase family BJD11_09175 PF01321 Creatinase/Prolidase N-terminal domain BJD11_09175 PF00557 Metallopeptidase family M24 BJD11_09190 PF13520 Amino acid permease BJD11_09210 PF09286 Pro-kumamolisin, activation domain BJD11_09210 PF00082 Subtilase family BJD11_09220 PF00593 TonB dependent receptor BJD11_09220 PF07715 TonB-dependent Receptor Plug Domain BJD11_09225 PF07532 Bacterial Ig-like domain (group 4) BJD11_09230 PF04616 Glycosyl hydrolases family 43 BJD11_09240 PF00593 TonB dependent receptor BJD11_09240 PF07715 TonB-dependent Receptor Plug Domain BJD11_09265 PF01527 Transposase BJD11_09270 PF13683 Integrase core domain BJD11_09270 PF13276 HTH-like domain BJD11_09300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_09300 PF00183 Hsp90 protein BJD11_09310 PF01467 Cytidylyltransferase-like BJD11_09325 PF00037 4Fe-4S binding domain BJD11_09340 PF02927 Cellulase N-terminal ig-like domain BJD11_09340 PF00759 Glycosyl hydrolase family 9 BJD11_09385 PF02547 Queuosine biosynthesis protein BJD11_09390 PF01702 Queuine tRNA-ribosyltransferase BJD11_09395 PF02699 Preprotein translocase subunit BJD11_09400 PF02355 Protein export membrane protein BJD11_09400 PF13721 SecD export protein N-terminal TM region BJD11_09400 PF07549 SecD/SecF GG Motif BJD11_09405 PF07549 SecD/SecF GG Motif BJD11_09405 PF02355 Protein export membrane protein BJD11_09420 PF13333 Integrase core domain BJD11_09420 PF00665 Integrase core domain BJD11_09420 PF13276 HTH-like domain BJD11_09460 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD11_09465 PF00294 pfkB family carbohydrate kinase BJD11_09470 PF00391 PEP-utilising enzyme, mobile domain BJD11_09470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD11_09470 PF00381 PTS HPr component phosphorylation site BJD11_09470 PF05524 PEP-utilising enzyme, N-terminal BJD11_09470 PF02896 PEP-utilising enzyme, TIM barrel domain BJD11_09475 PF00356 Bacterial regulatory proteins, lacI family BJD11_09480 PF00873 AcrB/AcrD/AcrF family BJD11_09485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_09485 PF00529 HlyD membrane-fusion protein of T1SS BJD11_09495 PF05088 Bacterial NAD-glutamate dehydrogenase BJD11_09500 PF07690 Major Facilitator Superfamily BJD11_09505 PF00072 Response regulator receiver domain BJD11_09510 PF00672 HAMP domain BJD11_09510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_09510 PF00512 His Kinase A (phospho-acceptor) domain BJD11_09510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD11_09510 PF01627 Hpt domain BJD11_09510 PF00072 Response regulator receiver domain BJD11_09515 PF04286 Protein of unknown function (DUF445) BJD11_09525 PF00202 Aminotransferase class-III BJD11_09535 PF07690 Major Facilitator Superfamily BJD11_09540 PF02634 FdhD/NarQ family BJD11_09545 PF00384 Molybdopterin oxidoreductase BJD11_09555 PF00083 Sugar (and other) transporter BJD11_09555 PF07690 Major Facilitator Superfamily BJD11_09560 PF01814 Hemerythrin HHE cation binding domain BJD11_09565 PF00072 Response regulator receiver domain BJD11_09565 PF00990 Diguanylate cyclase, GGDEF domain BJD11_09570 PF01266 FAD dependent oxidoreductase BJD11_09575 PF00120 Glutamine synthetase, catalytic domain BJD11_09580 PF07722 Peptidase C26 BJD11_09585 PF00120 Glutamine synthetase, catalytic domain BJD11_09590 PF00202 Aminotransferase class-III BJD11_09595 PF13416 Bacterial extracellular solute-binding protein BJD11_09600 PF13533 Biotin-lipoyl like BJD11_09605 PF07690 Major Facilitator Superfamily BJD11_09610 PF02321 Outer membrane efflux protein BJD11_09625 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_09630 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_09640 PF00171 Aldehyde dehydrogenase family BJD11_09655 PF00571 CBS domain BJD11_09655 PF03471 Transporter associated domain BJD11_09665 PF02130 Uncharacterized protein family UPF0054 BJD11_09675 PF02562 PhoH-like protein BJD11_09680 PF01938 TRAM domain BJD11_09680 PF00919 Uncharacterized protein family UPF0004 BJD11_09680 PF04055 Radical SAM superfamily BJD11_09695 PF01464 Transglycosylase SLT domain BJD11_09705 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BJD11_09705 PF00355 Rieske [2Fe-2S] domain BJD11_09710 PF00033 Cytochrome b/b6/petB BJD11_09710 PF00032 Cytochrome b(C-terminal)/b6/petD BJD11_09715 PF02167 Cytochrome C1 family BJD11_09720 PF00043 Glutathione S-transferase, C-terminal domain BJD11_09720 PF02798 Glutathione S-transferase, N-terminal domain BJD11_09725 PF04386 Stringent starvation protein B BJD11_09745 PF00271 Helicase conserved C-terminal domain BJD11_09745 PF00270 DEAD/DEAH box helicase BJD11_09745 PF08494 DEAD/H associated BJD11_09750 PF02245 Methylpurine-DNA glycosylase (MPG) BJD11_09755 PF02743 Cache domain BJD11_09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_09755 PF00672 HAMP domain BJD11_09760 PF01584 CheW-like domain BJD11_09785 PF01381 Helix-turn-helix BJD11_09800 PF13356 Arm DNA-binding domain BJD11_09800 PF00589 Phage integrase family BJD11_09820 PF13298 DNA polymerase Ligase (LigD) BJD11_09820 PF04679 ATP dependent DNA ligase C terminal region BJD11_09820 PF01068 ATP dependent DNA ligase domain BJD11_09825 PF00570 HRDC domain BJD11_09825 PF01612 3'-5' exonuclease BJD11_09840 PF03781 Sulfatase-modifying factor enzyme 1 BJD11_09855 PF13742 OB-fold nucleic acid binding domain BJD11_09855 PF02601 Exonuclease VII, large subunit BJD11_09860 PF08331 Domain of unknown function (DUF1730) BJD11_09865 PF03853 YjeF-related protein N-terminus BJD11_09865 PF01256 Carbohydrate kinase BJD11_09870 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BJD11_09875 PF01520 N-acetylmuramoyl-L-alanine amidase BJD11_09875 PF11741 AMIN domain BJD11_09880 PF01119 DNA mismatch repair protein, C-terminal domain BJD11_09880 PF08676 MutL C terminal dimerisation domain BJD11_09900 PF07879 PHB/PHA accumulation regulator DNA-binding domain BJD11_09900 PF05233 PHB accumulation regulatory domain BJD11_09905 PF00106 short chain dehydrogenase BJD11_09910 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD11_09915 PF01435 Peptidase family M48 BJD11_09920 PF00072 Response regulator receiver domain BJD11_09920 PF00990 Diguanylate cyclase, GGDEF domain BJD11_09920 PF00563 EAL domain BJD11_09930 PF07152 YaeQ protein BJD11_09935 PF00313 'Cold-shock' DNA-binding domain BJD11_09940 PF02798 Glutathione S-transferase, N-terminal domain BJD11_09940 PF14497 Glutathione S-transferase, C-terminal domain BJD11_09945 PF00135 Carboxylesterase family BJD11_09950 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BJD11_09955 PF00156 Phosphoribosyl transferase domain BJD11_09960 PF03880 DbpA RNA binding domain BJD11_09960 PF00270 DEAD/DEAH box helicase BJD11_09960 PF00271 Helicase conserved C-terminal domain BJD11_09975 PF00545 ribonuclease BJD11_09980 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD11_09980 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD11_09985 PF00459 Inositol monophosphatase family BJD11_09990 PF00588 SpoU rRNA Methylase family BJD11_10000 PF00563 EAL domain BJD11_10000 PF03707 Bacterial signalling protein N terminal repeat BJD11_10000 PF13188 PAS domain BJD11_10000 PF00990 Diguanylate cyclase, GGDEF domain BJD11_10005 PF04055 Radical SAM superfamily BJD11_10010 PF08207 Elongation factor P (EF-P) KOW-like domain BJD11_10010 PF09285 Elongation factor P, C-terminal BJD11_10010 PF01132 Elongation factor P (EF-P) OB domain BJD11_10020 PF01979 Amidohydrolase family BJD11_10030 PF13419 Haloacid dehalogenase-like hydrolase BJD11_10045 PF00295 Glycosyl hydrolases family 28 BJD11_10070 PF00753 Metallo-beta-lactamase superfamily BJD11_10085 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BJD11_10105 PF08460 Bacterial SH3 domain BJD11_10105 PF01551 Peptidase family M23 BJD11_10110 PF01979 Amidohydrolase family BJD11_10115 PF01809 Putative membrane protein insertion efficiency factor BJD11_10120 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD11_10130 PF02657 Fe-S metabolism associated domain BJD11_10135 PF09190 DALR domain BJD11_10135 PF01406 tRNA synthetases class I (C) catalytic domain BJD11_10145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD11_10145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD11_10150 PF00764 Arginosuccinate synthase BJD11_10165 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BJD11_10165 PF00696 Amino acid kinase family BJD11_10175 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD11_10180 PF00206 Lyase BJD11_10190 PF00696 Amino acid kinase family BJD11_10190 PF01472 PUA domain BJD11_10195 PF00171 Aldehyde dehydrogenase family BJD11_10205 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BJD11_10205 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BJD11_10225 PF02322 Cytochrome bd terminal oxidase subunit II BJD11_10230 PF01654 Cytochrome bd terminal oxidase subunit I BJD11_10235 PF00005 ABC transporter BJD11_10235 PF00664 ABC transporter transmembrane region BJD11_10240 PF00664 ABC transporter transmembrane region BJD11_10240 PF00005 ABC transporter BJD11_10245 PF00313 'Cold-shock' DNA-binding domain BJD11_10250 PF00561 alpha/beta hydrolase fold BJD11_10260 PF03918 Cytochrome C biogenesis protein BJD11_10265 PF08534 Redoxin BJD11_10270 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD11_10270 PF01578 Cytochrome C assembly protein BJD11_10275 PF03100 CcmE BJD11_10285 PF01578 Cytochrome C assembly protein BJD11_10290 PF03379 CcmB protein BJD11_10295 PF00005 ABC transporter BJD11_10300 PF00155 Aminotransferase class I and II BJD11_10305 PF00795 Carbon-nitrogen hydrolase BJD11_10320 PF00849 RNA pseudouridylate synthase BJD11_10320 PF01479 S4 domain BJD11_10325 PF04079 Segregation and condensation complex subunit ScpB BJD11_10330 PF02616 Segregation and condensation protein ScpA BJD11_10335 PF03795 YCII-related domain BJD11_10345 PF00356 Bacterial regulatory proteins, lacI family BJD11_10365 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_10370 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_10395 PF00795 Carbon-nitrogen hydrolase BJD11_10400 PF04371 Porphyromonas-type peptidyl-arginine deiminase BJD11_10410 PF00444 Ribosomal protein L36 BJD11_10415 PF02224 Cytidylate kinase BJD11_10420 PF00575 S1 RNA binding domain BJD11_10425 PF00216 Bacterial DNA-binding protein BJD11_10435 PF18073 Rubredoxin metal binding domain BJD11_10440 PF00953 Glycosyl transferase family 4 BJD11_10445 PF02719 Polysaccharide biosynthesis protein BJD11_10450 PF00483 Nucleotidyl transferase BJD11_10455 PF02254 TrkA-N domain BJD11_10455 PF00999 Sodium/hydrogen exchanger family BJD11_10465 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BJD11_10465 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BJD11_10470 PF00571 CBS domain BJD11_10470 PF00478 IMP dehydrogenase / GMP reductase domain BJD11_10475 PF00958 GMP synthase C terminal domain BJD11_10475 PF00117 Glutamine amidotransferase class-I BJD11_10475 PF02540 NAD synthase BJD11_10485 PF13356 Arm DNA-binding domain BJD11_10485 PF00589 Phage integrase family BJD11_10515 PF13276 HTH-like domain BJD11_10515 PF00665 Integrase core domain BJD11_10515 PF13333 Integrase core domain BJD11_10525 PF01695 IstB-like ATP binding protein BJD11_10560 PF02303 Helix-destabilising protein BJD11_10565 PF17091 Inovirus G7P protein BJD11_10690 PF01527 Transposase BJD11_10695 PF13276 HTH-like domain BJD11_10695 PF13683 Integrase core domain BJD11_10705 PF07859 alpha/beta hydrolase fold BJD11_10720 PF00753 Metallo-beta-lactamase superfamily BJD11_10725 PF04143 Sulphur transport BJD11_10750 PF13406 Transglycosylase SLT domain BJD11_10755 PF13700 Domain of unknown function (DUF4158) BJD11_10755 PF01526 Tn3 transposase DDE domain BJD11_10785 PF00873 AcrB/AcrD/AcrF family BJD11_10790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_10790 PF00529 HlyD membrane-fusion protein of T1SS BJD11_10805 PF01106 NifU-like domain BJD11_10810 PF01329 Pterin 4 alpha carbinolamine dehydratase BJD11_10820 PF02535 ZIP Zinc transporter BJD11_10825 PF11737 Protein of unknown function (DUF3300) BJD11_10830 PF00849 RNA pseudouridylate synthase BJD11_10830 PF01479 S4 domain BJD11_10835 PF00575 S1 RNA binding domain BJD11_10835 PF10150 Ribonuclease E/G family BJD11_10835 PF12111 Polyribonucleotide phosphorylase C terminal BJD11_10840 PF00196 Bacterial regulatory proteins, luxR family BJD11_10840 PF00072 Response regulator receiver domain BJD11_10855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD11_10865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD11_10865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD11_10865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD11_10890 PF13276 HTH-like domain BJD11_10890 PF13333 Integrase core domain BJD11_10890 PF00665 Integrase core domain BJD11_10930 PF00436 Single-strand binding protein family BJD11_10935 PF01751 Toprim domain BJD11_10935 PF01131 DNA topoisomerase BJD11_10940 PF00145 C-5 cytosine-specific DNA methylase BJD11_10995 PF13700 Domain of unknown function (DUF4158) BJD11_10995 PF01526 Tn3 transposase DDE domain BJD11_11035 PF01527 Transposase BJD11_11040 PF13683 Integrase core domain BJD11_11040 PF13276 HTH-like domain BJD11_11075 PF13276 HTH-like domain BJD11_11075 PF00665 Integrase core domain BJD11_11075 PF13333 Integrase core domain BJD11_11090 PF01066 CDP-alcohol phosphatidyltransferase BJD11_11095 PF01541 GIY-YIG catalytic domain BJD11_11095 PF02151 UvrB/uvrC motif BJD11_11095 PF08459 UvrC Helix-hairpin-helix N-terminal BJD11_11105 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD11_11110 PF02348 Cytidylyltransferase BJD11_11115 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BJD11_11120 PF00664 ABC transporter transmembrane region BJD11_11120 PF00005 ABC transporter BJD11_11130 PF01618 MotA/TolQ/ExbB proton channel family BJD11_11135 PF00753 Metallo-beta-lactamase superfamily BJD11_11135 PF03772 Competence protein BJD11_11145 PF00005 ABC transporter BJD11_11150 PF02687 FtsX-like permease family BJD11_11150 PF12704 MacB-like periplasmic core domain BJD11_11160 PF03937 Flavinator of succinate dehydrogenase BJD11_11165 PF13085 2Fe-2S iron-sulfur cluster binding domain BJD11_11175 PF00890 FAD binding domain BJD11_11175 PF02910 Fumarate reductase flavoprotein C-term BJD11_11180 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BJD11_11195 PF01571 Aminomethyltransferase folate-binding domain BJD11_11200 PF17912 MalK OB fold domain BJD11_11200 PF00005 ABC transporter BJD11_11205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD11_11205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD11_11210 PF02685 Glucokinase BJD11_11215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BJD11_11220 PF00920 Dehydratase family BJD11_11225 PF01081 KDPG and KHG aldolase BJD11_11235 PF00873 AcrB/AcrD/AcrF family BJD11_11240 PF00873 AcrB/AcrD/AcrF family BJD11_11255 PF00034 Cytochrome c BJD11_11310 PF13356 Arm DNA-binding domain BJD11_11310 PF00589 Phage integrase family BJD11_11325 PF00512 His Kinase A (phospho-acceptor) domain BJD11_11325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_11325 PF09308 LuxQ, periplasmic BJD11_11325 PF00072 Response regulator receiver domain BJD11_11330 PF09371 Tex-like protein N-terminal domain BJD11_11330 PF16921 Tex protein YqgF-like domain BJD11_11330 PF17674 HHH domain BJD11_11330 PF00575 S1 RNA binding domain BJD11_11340 PF01266 FAD dependent oxidoreductase BJD11_11340 PF00355 Rieske [2Fe-2S] domain BJD11_11355 PF00561 alpha/beta hydrolase fold BJD11_11365 PF01066 CDP-alcohol phosphatidyltransferase BJD11_11385 PF03618 Kinase/pyrophosphorylase BJD11_11390 PF02896 PEP-utilising enzyme, TIM barrel domain BJD11_11390 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BJD11_11390 PF00391 PEP-utilising enzyme, mobile domain BJD11_11395 PF00924 Mechanosensitive ion channel BJD11_11395 PF05552 Conserved TM helix BJD11_11400 PF00929 Exonuclease BJD11_11405 PF14437 MafB19-like deaminase BJD11_11410 PF01325 Iron dependent repressor, N-terminal DNA binding domain BJD11_11410 PF02742 Iron dependent repressor, metal binding and dimerisation domain BJD11_11415 PF01566 Natural resistance-associated macrophage protein BJD11_11420 PF00561 alpha/beta hydrolase fold BJD11_11435 PF05977 Transmembrane secretion effector BJD11_11440 PF07969 Amidohydrolase family BJD11_11450 PF00857 Isochorismatase family BJD11_11460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_11460 PF07730 Histidine kinase BJD11_11465 PF00196 Bacterial regulatory proteins, luxR family BJD11_11465 PF00072 Response regulator receiver domain BJD11_11485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_11485 PF03466 LysR substrate binding domain BJD11_11490 PF03601 Conserved hypothetical protein 698 BJD11_11495 PF14525 AraC-binding-like domain BJD11_11495 PF12833 Helix-turn-helix domain BJD11_11500 PF00067 Cytochrome P450 BJD11_11505 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD11_11510 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_11510 PF14759 Reductase C-terminal BJD11_11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_11515 PF03466 LysR substrate binding domain BJD11_11520 PF00361 Proton-conducting membrane transporter BJD11_11520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD11_11520 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BJD11_11525 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BJD11_11535 PF03466 LysR substrate binding domain BJD11_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_11550 PF03352 Methyladenine glycosylase BJD11_11565 PF00270 DEAD/DEAH box helicase BJD11_11565 PF17191 RecG wedge domain BJD11_11565 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BJD11_11575 PF10544 T5orf172 domain BJD11_11625 PF13276 HTH-like domain BJD11_11625 PF00665 Integrase core domain BJD11_11625 PF13333 Integrase core domain BJD11_11630 PF03421 YopJ Serine/Threonine acetyltransferase BJD11_11635 PF13185 GAF domain BJD11_11635 PF07730 Histidine kinase BJD11_11635 PF13492 GAF domain BJD11_11635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_11645 PF00196 Bacterial regulatory proteins, luxR family BJD11_11645 PF00072 Response regulator receiver domain BJD11_11655 PF00072 Response regulator receiver domain BJD11_11655 PF00196 Bacterial regulatory proteins, luxR family BJD11_11660 PF00067 Cytochrome P450 BJD11_11665 PF05199 GMC oxidoreductase BJD11_11665 PF00732 GMC oxidoreductase BJD11_11675 PF00486 Transcriptional regulatory protein, C terminal BJD11_11675 PF00072 Response regulator receiver domain BJD11_11680 PF03150 Di-haem cytochrome c peroxidase BJD11_11680 PF00034 Cytochrome c BJD11_11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_11685 PF00512 His Kinase A (phospho-acceptor) domain BJD11_11690 PF03466 LysR substrate binding domain BJD11_11690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_11710 PF00069 Protein kinase domain BJD11_11750 PF04717 Type VI secretion system, phage-baseplate injector BJD11_11780 PF17871 AAA lid domain BJD11_11780 PF07724 AAA domain (Cdc48 subfamily) BJD11_11780 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_11780 PF10431 C-terminal, D2-small domain, of ClpB protein BJD11_11805 PF05638 Type VI secretion system effector, Hcp BJD11_11835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD11_11840 PF07995 Glucose / Sorbosone dehydrogenase BJD11_11850 PF00144 Beta-lactamase BJD11_11855 PF00072 Response regulator receiver domain BJD11_11855 PF04397 LytTr DNA-binding domain BJD11_11860 PF06580 Histidine kinase BJD11_11860 PF07694 5TMR of 5TMR-LYT BJD11_11860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_11870 PF00082 Subtilase family BJD11_11870 PF03797 Autotransporter beta-domain BJD11_11880 PF00529 HlyD membrane-fusion protein of T1SS BJD11_11880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_11885 PF00873 AcrB/AcrD/AcrF family BJD11_11895 PF00512 His Kinase A (phospho-acceptor) domain BJD11_11895 PF00072 Response regulator receiver domain BJD11_11895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_11895 PF13426 PAS domain BJD11_11895 PF08448 PAS fold BJD11_11900 PF00196 Bacterial regulatory proteins, luxR family BJD11_11900 PF00072 Response regulator receiver domain BJD11_11905 PF12951 Passenger-associated-transport-repeat BJD11_11910 PF00563 EAL domain BJD11_11910 PF08447 PAS fold BJD11_11910 PF00990 Diguanylate cyclase, GGDEF domain BJD11_11910 PF08448 PAS fold BJD11_11930 PF05974 Domain of unknown function (DUF892) BJD11_11945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD11_11950 PF01568 Molydopterin dinucleotide binding domain BJD11_11950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BJD11_11950 PF04324 BFD-like [2Fe-2S] binding domain BJD11_11950 PF00384 Molybdopterin oxidoreductase BJD11_11955 PF00355 Rieske [2Fe-2S] domain BJD11_11955 PF11723 Homotrimeric ring hydroxylase BJD11_11960 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_11960 PF18267 Rubredoxin NAD+ reductase C-terminal domain BJD11_11960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD11_11960 PF04324 BFD-like [2Fe-2S] binding domain BJD11_11960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD11_11965 PF07690 Major Facilitator Superfamily BJD11_11975 PF00072 Response regulator receiver domain BJD11_11975 PF03861 ANTAR domain BJD11_11980 PF14824 Sirohaem biosynthesis protein central BJD11_11980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD11_11980 PF10414 Sirohaem synthase dimerisation region BJD11_12005 PF12804 MobA-like NTP transferase domain BJD11_12010 PF00994 Probable molybdopterin binding domain BJD11_12010 PF03454 MoeA C-terminal region (domain IV) BJD11_12010 PF03453 MoeA N-terminal region (domain I and II) BJD11_12020 PF03372 Endonuclease/Exonuclease/phosphatase family BJD11_12030 PF00107 Zinc-binding dehydrogenase BJD11_12030 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_12030 PF13823 Alcohol dehydrogenase GroES-associated BJD11_12060 PF00899 ThiF family BJD11_12065 PF03453 MoeA N-terminal region (domain I and II) BJD11_12065 PF00994 Probable molybdopterin binding domain BJD11_12065 PF03454 MoeA C-terminal region (domain IV) BJD11_12070 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BJD11_12070 PF01926 50S ribosome-binding GTPase BJD11_12075 PF13360 PQQ-like domain BJD11_12075 PF01011 PQQ enzyme repeat BJD11_12085 PF13464 Domain of unknown function (DUF4115) BJD11_12095 PF04055 Radical SAM superfamily BJD11_12100 PF00334 Nucleoside diphosphate kinase BJD11_12110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD11_12110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD11_12110 PF00378 Enoyl-CoA hydratase/isomerase BJD11_12115 PF02803 Thiolase, C-terminal domain BJD11_12115 PF00108 Thiolase, N-terminal domain BJD11_12120 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BJD11_12125 PF16193 AAA C-terminal domain BJD11_12125 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_12125 PF12002 MgsA AAA+ ATPase C terminal BJD11_12140 PF03548 Outer membrane lipoprotein carrier protein LolA BJD11_12150 PF01580 FtsK/SpoIIIE family BJD11_12150 PF09397 Ftsk gamma domain BJD11_12150 PF17854 FtsK alpha domain BJD11_12150 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BJD11_12155 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_12170 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BJD11_12175 PF01176 Translation initiation factor 1A / IF-1 BJD11_12180 PF17871 AAA lid domain BJD11_12180 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_12180 PF07724 AAA domain (Cdc48 subfamily) BJD11_12180 PF10431 C-terminal, D2-small domain, of ClpB protein BJD11_12180 PF02861 Clp amino terminal domain, pathogenicity island component BJD11_12185 PF02617 ATP-dependent Clp protease adaptor protein ClpS BJD11_12190 PF00293 NUDIX domain BJD11_12200 PF04356 Protein of unknown function (DUF489) BJD11_12205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12205 PF12729 Four helix bundle sensory module for signal transduction BJD11_12205 PF00672 HAMP domain BJD11_12215 PF00990 Diguanylate cyclase, GGDEF domain BJD11_12215 PF00563 EAL domain BJD11_12215 PF03707 Bacterial signalling protein N terminal repeat BJD11_12220 PF07730 Histidine kinase BJD11_12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_12225 PF00563 EAL domain BJD11_12225 PF00990 Diguanylate cyclase, GGDEF domain BJD11_12225 PF03707 Bacterial signalling protein N terminal repeat BJD11_12230 PF00512 His Kinase A (phospho-acceptor) domain BJD11_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_12230 PF13188 PAS domain BJD11_12230 PF13426 PAS domain BJD11_12230 PF00989 PAS fold BJD11_12250 PF00072 Response regulator receiver domain BJD11_12250 PF01584 CheW-like domain BJD11_12260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD11_12260 PF00460 Flagella basal body rod protein BJD11_12265 PF03963 Flagellar hook capping protein - N-terminal region BJD11_12270 PF07559 Flagellar basal body protein FlaE BJD11_12270 PF00460 Flagella basal body rod protein BJD11_12270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD11_12275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD11_12275 PF00460 Flagella basal body rod protein BJD11_12285 PF00460 Flagella basal body rod protein BJD11_12285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD11_12290 PF02107 Flagellar L-ring protein BJD11_12295 PF02119 Flagellar P-ring protein BJD11_12300 PF10135 Rod binding protein BJD11_12300 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD11_12310 PF00700 Bacterial flagellin C-terminal helical region BJD11_12310 PF00669 Bacterial flagellin N-terminal helical region BJD11_12315 PF00700 Bacterial flagellin C-terminal helical region BJD11_12315 PF00669 Bacterial flagellin N-terminal helical region BJD11_12320 PF07196 Flagellin hook IN motif BJD11_12320 PF07195 Flagellar hook-associated protein 2 C-terminus BJD11_12320 PF02465 Flagellar hook-associated protein 2 N-terminus BJD11_12325 PF02561 Flagellar protein FliS BJD11_12340 PF00196 Bacterial regulatory proteins, luxR family BJD11_12340 PF00072 Response regulator receiver domain BJD11_12345 PF04963 Sigma-54 factor, core binding domain BJD11_12345 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD11_12345 PF04552 Sigma-54, DNA binding domain BJD11_12350 PF01339 CheB methylesterase BJD11_12350 PF00072 Response regulator receiver domain BJD11_12355 PF00072 Response regulator receiver domain BJD11_12355 PF00158 Sigma-54 interaction domain BJD11_12355 PF02954 Bacterial regulatory protein, Fis family BJD11_12360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD11_12370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD11_12370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD11_12410 PF02348 Cytidylyltransferase BJD11_12415 PF05050 Methyltransferase FkbM domain BJD11_12420 PF00534 Glycosyl transferases group 1 BJD11_12420 PF00535 Glycosyl transferase family 2 BJD11_12425 PF02049 Flagellar hook-basal body complex protein FliE BJD11_12430 PF08345 Flagellar M-ring protein C-terminal BJD11_12430 PF01514 Secretory protein of YscJ/FliF family BJD11_12435 PF14842 FliG N-terminal domain BJD11_12435 PF14841 FliG middle domain BJD11_12435 PF01706 FliG C-terminal domain BJD11_12445 PF18269 T3SS EscN ATPase C-terminal domain BJD11_12445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD11_12465 PF02154 Flagellar motor switch protein FliM BJD11_12465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD11_12470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD11_12475 PF04347 Flagellar biosynthesis protein, FliO BJD11_12480 PF00813 FliP family BJD11_12485 PF01313 Bacterial export proteins, family 3 BJD11_12490 PF01311 Bacterial export proteins, family 1 BJD11_12495 PF00563 EAL domain BJD11_12495 PF13188 PAS domain BJD11_12495 PF00990 Diguanylate cyclase, GGDEF domain BJD11_12495 PF03707 Bacterial signalling protein N terminal repeat BJD11_12505 PF03707 Bacterial signalling protein N terminal repeat BJD11_12505 PF00990 Diguanylate cyclase, GGDEF domain BJD11_12505 PF00563 EAL domain BJD11_12505 PF13188 PAS domain BJD11_12510 PF03707 Bacterial signalling protein N terminal repeat BJD11_12510 PF00563 EAL domain BJD11_12510 PF00990 Diguanylate cyclase, GGDEF domain BJD11_12515 PF01312 FlhB HrpN YscU SpaS Family BJD11_12520 PF00771 FHIPEP family BJD11_12525 PF00448 SRP54-type protein, GTPase domain BJD11_12530 PF10609 NUBPL iron-transfer P-loop NTPase BJD11_12535 PF04542 Sigma-70 region 2 BJD11_12535 PF04539 Sigma-70 region 3 BJD11_12535 PF04545 Sigma-70, region 4 BJD11_12540 PF00072 Response regulator receiver domain BJD11_12545 PF04344 Chemotaxis phosphatase, CheZ BJD11_12550 PF02895 Signal transducing histidine kinase, homodimeric domain BJD11_12550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_12550 PF01627 Hpt domain BJD11_12550 PF01584 CheW-like domain BJD11_12550 PF07194 P2 response regulator binding domain BJD11_12590 PF00665 Integrase core domain BJD11_12590 PF13333 Integrase core domain BJD11_12590 PF13276 HTH-like domain BJD11_12595 PF01527 Transposase BJD11_12600 PF13683 Integrase core domain BJD11_12600 PF13276 HTH-like domain BJD11_12625 PF01618 MotA/TolQ/ExbB proton channel family BJD11_12630 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD11_12630 PF00691 OmpA family BJD11_12635 PF13614 AAA domain BJD11_12640 PF01584 CheW-like domain BJD11_12650 PF00072 Response regulator receiver domain BJD11_12655 PF01627 Hpt domain BJD11_12655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_12655 PF01584 CheW-like domain BJD11_12655 PF09078 CheY binding BJD11_12655 PF02895 Signal transducing histidine kinase, homodimeric domain BJD11_12660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12660 PF02203 Tar ligand binding domain homologue BJD11_12660 PF00672 HAMP domain BJD11_12665 PF00672 HAMP domain BJD11_12665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12665 PF02203 Tar ligand binding domain homologue BJD11_12675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12675 PF02203 Tar ligand binding domain homologue BJD11_12675 PF00672 HAMP domain BJD11_12680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12680 PF00672 HAMP domain BJD11_12680 PF02203 Tar ligand binding domain homologue BJD11_12695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12695 PF00672 HAMP domain BJD11_12700 PF02203 Tar ligand binding domain homologue BJD11_12700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12700 PF00672 HAMP domain BJD11_12705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12705 PF02203 Tar ligand binding domain homologue BJD11_12705 PF00672 HAMP domain BJD11_12715 PF00672 HAMP domain BJD11_12715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12715 PF02203 Tar ligand binding domain homologue BJD11_12720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12720 PF00672 HAMP domain BJD11_12720 PF02203 Tar ligand binding domain homologue BJD11_12725 PF00672 HAMP domain BJD11_12725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12725 PF02203 Tar ligand binding domain homologue BJD11_12730 PF00672 HAMP domain BJD11_12730 PF02203 Tar ligand binding domain homologue BJD11_12730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12735 PF02203 Tar ligand binding domain homologue BJD11_12735 PF00672 HAMP domain BJD11_12745 PF07238 PilZ domain BJD11_12745 PF07317 Flagellar regulator YcgR BJD11_12750 PF01584 CheW-like domain BJD11_12760 PF00672 HAMP domain BJD11_12760 PF02203 Tar ligand binding domain homologue BJD11_12760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_12765 PF03705 CheR methyltransferase, all-alpha domain BJD11_12765 PF01739 CheR methyltransferase, SAM binding domain BJD11_12770 PF03975 CheD chemotactic sensory transduction BJD11_12775 PF00072 Response regulator receiver domain BJD11_12775 PF01339 CheB methylesterase BJD11_12780 PF00990 Diguanylate cyclase, GGDEF domain BJD11_12780 PF00563 EAL domain BJD11_12780 PF03707 Bacterial signalling protein N terminal repeat BJD11_12785 PF00561 alpha/beta hydrolase fold BJD11_12790 PF11791 Aconitate B N-terminal domain BJD11_12790 PF00330 Aconitase family (aconitate hydratase) BJD11_12790 PF06434 Aconitate hydratase 2 N-terminus BJD11_12805 PF00330 Aconitase family (aconitate hydratase) BJD11_12805 PF00694 Aconitase C-terminal domain BJD11_12815 PF13193 AMP-binding enzyme C-terminal domain BJD11_12815 PF00501 AMP-binding enzyme BJD11_12820 PF00378 Enoyl-CoA hydratase/isomerase BJD11_12825 PF00512 His Kinase A (phospho-acceptor) domain BJD11_12825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_12825 PF01627 Hpt domain BJD11_12825 PF00072 Response regulator receiver domain BJD11_12830 PF00072 Response regulator receiver domain BJD11_12830 PF01627 Hpt domain BJD11_12830 PF00512 His Kinase A (phospho-acceptor) domain BJD11_12830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_12835 PF00072 Response regulator receiver domain BJD11_12840 PF00152 tRNA synthetases class II (D, K and N) BJD11_12840 PF01336 OB-fold nucleic acid binding domain BJD11_12845 PF00472 RF-1 domain BJD11_12845 PF03462 PCRF domain BJD11_12850 PF00072 Response regulator receiver domain BJD11_12850 PF04397 LytTr DNA-binding domain BJD11_12860 PF17768 RecJ OB domain BJD11_12860 PF02272 DHHA1 domain BJD11_12860 PF01368 DHH family BJD11_12870 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD11_12870 PF03449 Transcription elongation factor, N-terminal BJD11_12875 PF02142 MGS-like domain BJD11_12875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BJD11_12875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD11_12885 PF00117 Glutamine amidotransferase class-I BJD11_12885 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BJD11_12890 PF01113 Dihydrodipicolinate reductase, N-terminus BJD11_12890 PF05173 Dihydrodipicolinate reductase, C-terminus BJD11_12900 PF03475 3-alpha domain BJD11_12900 PF03473 MOSC domain BJD11_12905 PF00155 Aminotransferase class I and II BJD11_12920 PF07664 Ferrous iron transport protein B C terminus BJD11_12920 PF02421 Ferrous iron transport protein B BJD11_12920 PF07670 Nucleoside recognition BJD11_12930 PF00378 Enoyl-CoA hydratase/isomerase BJD11_12940 PF00682 HMGL-like BJD11_12945 PF00106 short chain dehydrogenase BJD11_12950 PF08207 Elongation factor P (EF-P) KOW-like domain BJD11_12950 PF01132 Elongation factor P (EF-P) OB domain BJD11_12950 PF09285 Elongation factor P, C-terminal BJD11_12970 PF01565 FAD binding domain BJD11_12970 PF02913 FAD linked oxidases, C-terminal domain BJD11_12975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD11_12975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD11_12985 PF13520 Amino acid permease BJD11_12990 PF13520 Amino acid permease BJD11_12995 PF00596 Class II Aldolase and Adducin N-terminal domain BJD11_13000 PF03079 ARD/ARD' family BJD11_13020 PF01502 Phosphoribosyl-AMP cyclohydrolase BJD11_13020 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BJD11_13025 PF00977 Histidine biosynthesis protein BJD11_13030 PF00977 Histidine biosynthesis protein BJD11_13035 PF00117 Glutamine amidotransferase class-I BJD11_13040 PF00475 Imidazoleglycerol-phosphate dehydratase BJD11_13045 PF00155 Aminotransferase class I and II BJD11_13050 PF00815 Histidinol dehydrogenase BJD11_13055 PF08029 HisG, C-terminal domain BJD11_13055 PF01634 ATP phosphoribosyltransferase BJD11_13065 PF13393 Histidyl-tRNA synthetase BJD11_13065 PF03129 Anticodon binding domain BJD11_13070 PF13545 Crp-like helix-turn-helix domain BJD11_13070 PF00027 Cyclic nucleotide-binding domain BJD11_13080 PF00291 Pyridoxal-phosphate dependent enzyme BJD11_13080 PF14821 Threonine synthase N terminus BJD11_13090 PF08544 GHMP kinases C terminal BJD11_13090 PF00288 GHMP kinases N terminal domain BJD11_13095 PF00696 Amino acid kinase family BJD11_13095 PF03447 Homoserine dehydrogenase, NAD binding domain BJD11_13095 PF00742 Homoserine dehydrogenase BJD11_13095 PF13840 ACT domain BJD11_13095 PF01842 ACT domain BJD11_13100 PF13683 Integrase core domain BJD11_13100 PF13276 HTH-like domain BJD11_13105 PF01527 Transposase BJD11_13125 PF13276 HTH-like domain BJD11_13125 PF13683 Integrase core domain BJD11_13130 PF01527 Transposase BJD11_13140 PF15526 Novel toxin 21 BJD11_13140 PF13332 Hemagglutinin repeat BJD11_13140 PF04829 Pre-toxin domain with VENN motif BJD11_13140 PF05594 Haemagluttinin repeat BJD11_13140 PF05860 haemagglutination activity domain BJD11_13145 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BJD11_13145 PF08479 POTRA domain, ShlB-type BJD11_13145 PF17287 POTRA domain BJD11_13170 PF01527 Transposase BJD11_13175 PF13683 Integrase core domain BJD11_13175 PF13276 HTH-like domain BJD11_13180 PF13276 HTH-like domain BJD11_13180 PF13683 Integrase core domain BJD11_13195 PF01527 Transposase BJD11_13200 PF13276 HTH-like domain BJD11_13200 PF13683 Integrase core domain BJD11_13210 PF00665 Integrase core domain BJD11_13210 PF13276 HTH-like domain BJD11_13210 PF13333 Integrase core domain BJD11_13220 PF13683 Integrase core domain BJD11_13220 PF13276 HTH-like domain BJD11_13225 PF01527 Transposase BJD11_13255 PF13276 HTH-like domain BJD11_13255 PF00665 Integrase core domain BJD11_13255 PF13333 Integrase core domain BJD11_13280 PF13333 Integrase core domain BJD11_13280 PF13276 HTH-like domain BJD11_13280 PF00665 Integrase core domain BJD11_13305 PF00171 Aldehyde dehydrogenase family BJD11_13325 PF01180 Dihydroorotate dehydrogenase BJD11_13330 PF01565 FAD binding domain BJD11_13330 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BJD11_13335 PF00892 EamA-like transporter family BJD11_13340 PF01177 Asp/Glu/Hydantoin racemase BJD11_13345 PF07690 Major Facilitator Superfamily BJD11_13350 PF01569 PAP2 superfamily BJD11_13355 PF04551 GcpE protein BJD11_13370 PF00072 Response regulator receiver domain BJD11_13375 PF00150 Cellulase (glycosyl hydrolase family 5) BJD11_13375 PF02013 Cellulose or protein binding domain BJD11_13380 PF00360 Phytochrome region BJD11_13380 PF00563 EAL domain BJD11_13380 PF01590 GAF domain BJD11_13380 PF00990 Diguanylate cyclase, GGDEF domain BJD11_13385 PF00474 Sodium:solute symporter family BJD11_13395 PF14310 Fibronectin type III-like domain BJD11_13395 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD11_13395 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD11_13420 PF00342 Phosphoglucose isomerase BJD11_13425 PF02261 Aspartate decarboxylase BJD11_13430 PF02569 Pantoate-beta-alanine ligase BJD11_13435 PF02548 Ketopantoate hydroxymethyltransferase BJD11_13440 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD11_13445 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD11_13445 PF12626 Polymerase A arginine-rich C-terminus BJD11_13445 PF01743 Poly A polymerase head domain BJD11_13455 PF02649 Type I GTP cyclohydrolase folE2 BJD11_13460 PF01520 N-acetylmuramoyl-L-alanine amidase BJD11_13475 PF00083 Sugar (and other) transporter BJD11_13485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD11_13485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD11_13495 PF17137 Domain of unknown function (DUF5110) BJD11_13495 PF01055 Glycosyl hydrolases family 31 BJD11_13495 PF16338 Domain of unknown function (DUF4968) BJD11_13510 PF03442 Carbohydrate binding domain X2 BJD11_13510 PF00942 Cellulose binding domain BJD11_13525 PF03466 LysR substrate binding domain BJD11_13525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_13540 PF01081 KDPG and KHG aldolase BJD11_13545 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD11_13545 PF13378 Enolase C-terminal domain-like BJD11_13550 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD11_13555 PF05035 2-keto-3-deoxy-galactonokinase BJD11_13560 PF11953 Domain of unknown function (DUF3470) BJD11_13560 PF00037 4Fe-4S binding domain BJD11_13570 PF00701 Dihydrodipicolinate synthetase family BJD11_13585 PF00578 AhpC/TSA family BJD11_13590 PF02562 PhoH-like protein BJD11_13590 PF13638 PIN domain BJD11_13605 PF08543 Phosphomethylpyrimidine kinase BJD11_13630 PF03466 LysR substrate binding domain BJD11_13630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_13640 PF17954 Quercetinase C-terminal cupin domain BJD11_13640 PF02678 Pirin BJD11_13645 PF13426 PAS domain BJD11_13645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_13645 PF08447 PAS fold BJD11_13660 PF02599 Global regulator protein family BJD11_13665 PF02272 DHHA1 domain BJD11_13665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD11_13665 PF01411 tRNA synthetases class II (A) BJD11_13670 PF02631 RecX family BJD11_13680 PF00154 recA bacterial DNA recombination protein BJD11_13685 PF00717 Peptidase S24-like BJD11_13685 PF01726 LexA DNA binding domain BJD11_13690 PF03109 ABC1 family BJD11_13695 PF02464 Competence-damaged protein BJD11_13700 PF01926 50S ribosome-binding GTPase BJD11_13700 PF16360 GTP-binding GTPase Middle Region BJD11_13700 PF13167 GTP-binding GTPase N-terminal BJD11_13705 PF17209 Hfq protein BJD11_13715 PF00809 Pterin binding enzyme BJD11_13720 PF01434 Peptidase family M41 BJD11_13720 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_13720 PF17862 AAA+ lid domain BJD11_13720 PF06480 FtsH Extracellular BJD11_13725 PF01728 FtsJ-like methyltransferase BJD11_13730 PF01985 CRS1 / YhbY (CRM) domain BJD11_13735 PF04430 Protein of unknown function (DUF498/DUF598) BJD11_13740 PF01551 Peptidase family M23 BJD11_13740 PF01476 LysM domain BJD11_13745 PF09335 SNARE associated Golgi protein BJD11_13755 PF01975 Survival protein SurE BJD11_13760 PF01713 Smr domain BJD11_13765 PF01142 tRNA pseudouridine synthase D (TruD) BJD11_13770 PF02542 YgbB family BJD11_13775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BJD11_13780 PF04977 Septum formation initiator BJD11_13785 PF03952 Enolase, N-terminal domain BJD11_13785 PF00113 Enolase, C-terminal TIM barrel domain BJD11_13795 PF00793 DAHP synthetase I family BJD11_13800 PF00117 Glutamine amidotransferase class-I BJD11_13800 PF06418 CTP synthase N-terminus BJD11_13810 PF01751 Toprim domain BJD11_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_13810 PF00986 DNA gyrase B subunit, carboxyl terminus BJD11_13810 PF00204 DNA gyrase B BJD11_13825 PF01384 Phosphate transporter family BJD11_13840 PF00571 CBS domain BJD11_13840 PF01595 Cyclin M transmembrane N-terminal domain BJD11_13840 PF03471 Transporter associated domain BJD11_13855 PF00296 Luciferase-like monooxygenase BJD11_13865 PF00664 ABC transporter transmembrane region BJD11_13865 PF00005 ABC transporter BJD11_13870 PF00005 ABC transporter BJD11_13890 PF00534 Glycosyl transferases group 1 BJD11_13890 PF13579 Glycosyl transferase 4-like domain BJD11_13910 PF08241 Methyltransferase domain BJD11_13925 PF00535 Glycosyl transferase family 2 BJD11_13930 PF01943 Polysaccharide biosynthesis protein BJD11_13935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD11_13940 PF05523 WxcM-like, C-terminal BJD11_13955 PF00034 Cytochrome c BJD11_13970 PF04542 Sigma-70 region 2 BJD11_13970 PF08281 Sigma-70, region 4 BJD11_13980 PF00082 Subtilase family BJD11_13985 PF01578 Cytochrome C assembly protein BJD11_13990 PF04995 Heme exporter protein D (CcmD) BJD11_13995 PF03100 CcmE BJD11_14000 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD11_14000 PF01578 Cytochrome C assembly protein BJD11_14005 PF08534 Redoxin BJD11_14010 PF03918 Cytochrome C biogenesis protein BJD11_14020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_14020 PF13426 PAS domain BJD11_14020 PF00072 Response regulator receiver domain BJD11_14025 PF06745 KaiC BJD11_14035 PF00672 HAMP domain BJD11_14035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD11_14035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_14035 PF01627 Hpt domain BJD11_14035 PF00512 His Kinase A (phospho-acceptor) domain BJD11_14035 PF00072 Response regulator receiver domain BJD11_14040 PF00072 Response regulator receiver domain BJD11_14040 PF00512 His Kinase A (phospho-acceptor) domain BJD11_14040 PF13188 PAS domain BJD11_14040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_14040 PF08448 PAS fold BJD11_14065 PF00672 HAMP domain BJD11_14065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_14065 PF02203 Tar ligand binding domain homologue BJD11_14080 PF00665 Integrase core domain BJD11_14080 PF13333 Integrase core domain BJD11_14080 PF13276 HTH-like domain BJD11_14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_14100 PF03466 LysR substrate binding domain BJD11_14105 PF02525 Flavodoxin-like fold BJD11_14110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD11_14110 PF02403 Seryl-tRNA synthetase N-terminal domain BJD11_14115 PF03544 Gram-negative bacterial TonB protein C-terminal BJD11_14125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD11_14130 PF01842 ACT domain BJD11_14130 PF00800 Prephenate dehydratase BJD11_14130 PF01817 Chorismate mutase type II BJD11_14135 PF00266 Aminotransferase class-V BJD11_14140 PF00174 Oxidoreductase molybdopterin binding domain BJD11_14145 PF01794 Ferric reductase like transmembrane component BJD11_14170 PF07702 UTRA domain BJD11_14170 PF00392 Bacterial regulatory proteins, gntR family BJD11_14185 PF07969 Amidohydrolase family BJD11_14190 PF00221 Aromatic amino acid lyase BJD11_14200 PF01175 Urocanase Rossmann-like domain BJD11_14200 PF17392 Urocanase C-terminal domain BJD11_14200 PF17391 Urocanase N-terminal domain BJD11_14210 PF13360 PQQ-like domain BJD11_14215 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD11_14215 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD11_14220 PF01008 Initiation factor 2 subunit family BJD11_14235 PF00152 tRNA synthetases class II (D, K and N) BJD11_14240 PF01653 NAD-dependent DNA ligase adenylation domain BJD11_14240 PF03120 NAD-dependent DNA ligase OB-fold domain BJD11_14240 PF12826 Helix-hairpin-helix motif BJD11_14240 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BJD11_14240 PF00533 BRCA1 C Terminus (BRCT) domain BJD11_14245 PF00155 Aminotransferase class I and II BJD11_14255 PF04354 ZipA, C-terminal FtsZ-binding domain BJD11_14260 PF02463 RecF/RecN/SMC N terminal domain BJD11_14265 PF01281 Ribosomal protein L9, N-terminal domain BJD11_14265 PF03948 Ribosomal protein L9, C-terminal domain BJD11_14270 PF01084 Ribosomal protein S18 BJD11_14275 PF01250 Ribosomal protein S6 BJD11_14280 PF01521 Iron-sulphur cluster biosynthesis BJD11_14290 PF01336 OB-fold nucleic acid binding domain BJD11_14290 PF00152 tRNA synthetases class II (D, K and N) BJD11_14310 PF04299 Putative FMN-binding domain BJD11_14315 PF00072 Response regulator receiver domain BJD11_14315 PF00196 Bacterial regulatory proteins, luxR family BJD11_14360 PF00484 Carbonic anhydrase BJD11_14365 PF06052 3-hydroxyanthranilic acid dioxygenase BJD11_14375 PF00266 Aminotransferase class-V BJD11_14380 PF01494 FAD binding domain BJD11_14390 PF00929 Exonuclease BJD11_14390 PF08411 Exonuclease C-terminal BJD11_14410 PF01513 ATP-NAD kinase BJD11_14415 PF01170 Putative RNA methylase family UPF0020 BJD11_14415 PF02926 THUMP domain BJD11_14415 PF10672 S-adenosylmethionine-dependent methyltransferase BJD11_14455 PF00581 Rhodanese-like domain BJD11_14460 PF00293 NUDIX domain BJD11_14465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD11_14465 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD11_14470 PF00378 Enoyl-CoA hydratase/isomerase BJD11_14480 PF00633 Helix-hairpin-helix motif BJD11_14480 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD11_14480 PF10576 Iron-sulfur binding domain of endonuclease III BJD11_14485 PF01740 STAS domain BJD11_14485 PF00916 Sulfate permease family BJD11_14490 PF00484 Carbonic anhydrase BJD11_14505 PF12849 PBP superfamily domain BJD11_14510 PF12849 PBP superfamily domain BJD11_14515 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_14520 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_14525 PF00005 ABC transporter BJD11_14530 PF01895 PhoU domain BJD11_14540 PF00929 Exonuclease BJD11_14545 PF07694 5TMR of 5TMR-LYT BJD11_14545 PF00990 Diguanylate cyclase, GGDEF domain BJD11_14555 PF00588 SpoU rRNA Methylase family BJD11_14555 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD11_14570 PF00575 S1 RNA binding domain BJD11_14570 PF08461 Ribonuclease R winged-helix domain BJD11_14570 PF08206 Ribonuclease B OB domain BJD11_14570 PF00773 RNB domain BJD11_14570 PF17876 Cold shock domain BJD11_14595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD11_14595 PF02770 Acyl-CoA dehydrogenase, middle domain BJD11_14595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD11_14600 PF01209 ubiE/COQ5 methyltransferase family BJD11_14605 PF00809 Pterin binding enzyme BJD11_14605 PF02574 Homocysteine S-methyltransferase BJD11_14610 PF02310 B12 binding domain BJD11_14610 PF02607 B12 binding domain BJD11_14610 PF02574 Homocysteine S-methyltransferase BJD11_14610 PF02965 Vitamin B12 dependent methionine synthase, activation domain BJD11_14610 PF00809 Pterin binding enzyme BJD11_14620 PF00294 pfkB family carbohydrate kinase BJD11_14625 PF07690 Major Facilitator Superfamily BJD11_14630 PF00356 Bacterial regulatory proteins, lacI family BJD11_14645 PF04102 SlyX BJD11_14650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD11_14650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD11_14650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD11_14655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD11_14655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD11_14660 PF00255 Glutathione peroxidase BJD11_14670 PF00392 Bacterial regulatory proteins, gntR family BJD11_14675 PF00005 ABC transporter BJD11_14700 PF10415 Fumarase C C-terminus BJD11_14700 PF00206 Lyase BJD11_14705 PF01595 Cyclin M transmembrane N-terminal domain BJD11_14705 PF00571 CBS domain BJD11_14705 PF03471 Transporter associated domain BJD11_14715 PF00206 Lyase BJD11_14715 PF08328 Adenylosuccinate lyase C-terminal BJD11_14725 PF08007 Cupin superfamily protein BJD11_14735 PF16078 2-oxoglutarate dehydrogenase N-terminus BJD11_14735 PF00676 Dehydrogenase E1 component BJD11_14735 PF16870 2-oxoglutarate dehydrogenase C-terminal BJD11_14735 PF02779 Transketolase, pyrimidine binding domain BJD11_14740 PF00364 Biotin-requiring enzyme BJD11_14740 PF02817 e3 binding domain BJD11_14740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD11_14745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD11_14745 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_14750 PF03641 Possible lysine decarboxylase BJD11_14755 PF01205 Uncharacterized protein family UPF0029 BJD11_14760 PF00664 ABC transporter transmembrane region BJD11_14760 PF00005 ABC transporter BJD11_14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_14765 PF03466 LysR substrate binding domain BJD11_14770 PF00664 ABC transporter transmembrane region BJD11_14770 PF03412 Peptidase C39 family BJD11_14770 PF00005 ABC transporter BJD11_14795 PF08543 Phosphomethylpyrimidine kinase BJD11_14805 PF00684 DnaJ central domain BJD11_14805 PF01556 DnaJ C terminal domain BJD11_14805 PF00226 DnaJ domain BJD11_14810 PF00012 Hsp70 protein BJD11_14815 PF01025 GrpE BJD11_14820 PF01628 HrcA protein C terminal domain BJD11_14820 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BJD11_14825 PF02463 RecF/RecN/SMC N terminal domain BJD11_14830 PF01475 Ferric uptake regulator family BJD11_14835 PF04355 SmpA / OmlA family BJD11_14840 PF03658 RnfH family Ubiquitin BJD11_14845 PF03364 Polyketide cyclase / dehydrase and lipid transport BJD11_14850 PF01668 SmpB protein BJD11_14875 PF00665 Integrase core domain BJD11_14875 PF13333 Integrase core domain BJD11_14875 PF13276 HTH-like domain BJD11_14900 PF00990 Diguanylate cyclase, GGDEF domain BJD11_14910 PF08448 PAS fold BJD11_14910 PF00990 Diguanylate cyclase, GGDEF domain BJD11_14915 PF02321 Outer membrane efflux protein BJD11_14920 PF00106 short chain dehydrogenase BJD11_14925 PF00873 AcrB/AcrD/AcrF family BJD11_14930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_14930 PF00529 HlyD membrane-fusion protein of T1SS BJD11_14945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_14945 PF03466 LysR substrate binding domain BJD11_14950 PF05736 OprF membrane domain BJD11_14950 PF00691 OmpA family BJD11_14955 PF00875 DNA photolyase BJD11_14955 PF03441 FAD binding domain of DNA photolyase BJD11_14960 PF03796 DnaB-like helicase C terminal domain BJD11_14960 PF00772 DnaB-like helicase N terminal domain BJD11_14965 PF03358 NADPH-dependent FMN reductase BJD11_14970 PF13537 Glutamine amidotransferase domain BJD11_14970 PF00733 Asparagine synthase BJD11_14980 PF02798 Glutathione S-transferase, N-terminal domain BJD11_14980 PF00043 Glutathione S-transferase, C-terminal domain BJD11_14990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD11_14990 PF02770 Acyl-CoA dehydrogenase, middle domain BJD11_14990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD11_15005 PF01026 TatD related DNase BJD11_15010 PF00899 ThiF family BJD11_15025 PF00313 'Cold-shock' DNA-binding domain BJD11_15035 PF02253 Phospholipase A1 BJD11_15040 PF00484 Carbonic anhydrase BJD11_15055 PF05683 Fumarase C-terminus BJD11_15055 PF05681 Fumarate hydratase (Fumerase) BJD11_15060 PF00005 ABC transporter BJD11_15065 PF00175 Oxidoreductase NAD-binding domain BJD11_15065 PF00970 Oxidoreductase FAD-binding domain BJD11_15070 PF00255 Glutathione peroxidase BJD11_15075 PF01432 Peptidase family M3 BJD11_15080 PF12802 MarR family BJD11_15105 PF00854 POT family BJD11_15115 PF14310 Fibronectin type III-like domain BJD11_15115 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD11_15115 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD11_15115 PF07691 PA14 domain BJD11_15135 PF07690 Major Facilitator Superfamily BJD11_15140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_15140 PF00529 HlyD membrane-fusion protein of T1SS BJD11_15160 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD11_15160 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD11_15165 PF05724 Thiopurine S-methyltransferase (TPMT) BJD11_15170 PF00210 Ferritin-like domain BJD11_15175 PF01804 Penicillin amidase BJD11_15190 PF00733 Asparagine synthase BJD11_15190 PF13537 Glutamine amidotransferase domain BJD11_15195 PF07687 Peptidase dimerisation domain BJD11_15195 PF01546 Peptidase family M20/M25/M40 BJD11_15200 PF03960 ArsC family BJD11_15205 PF14602 Hexapeptide repeat of succinyl-transferase BJD11_15205 PF00132 Bacterial transferase hexapeptide (six repeats) BJD11_15205 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BJD11_15210 PF01909 Nucleotidyltransferase domain BJD11_15210 PF08335 GlnD PII-uridylyltransferase BJD11_15210 PF01966 HD domain BJD11_15215 PF00557 Metallopeptidase family M24 BJD11_15250 PF00318 Ribosomal protein S2 BJD11_15255 PF00889 Elongation factor TS BJD11_15260 PF00072 Response regulator receiver domain BJD11_15260 PF00990 Diguanylate cyclase, GGDEF domain BJD11_15265 PF00696 Amino acid kinase family BJD11_15270 PF01765 Ribosome recycling factor BJD11_15275 PF01255 Putative undecaprenyl diphosphate synthase BJD11_15285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BJD11_15285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BJD11_15285 PF13288 DXP reductoisomerase C-terminal domain BJD11_15290 PF02163 Peptidase family M50 BJD11_15290 PF17820 PDZ domain BJD11_15295 PF07244 Surface antigen variable number repeat BJD11_15295 PF01103 Surface antigen BJD11_15305 PF00132 Bacterial transferase hexapeptide (six repeats) BJD11_15305 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BJD11_15310 PF07977 FabA-like domain BJD11_15315 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BJD11_15315 PF00132 Bacterial transferase hexapeptide (six repeats) BJD11_15320 PF02684 Lipid-A-disaccharide synthetase BJD11_15330 PF02811 PHP domain BJD11_15330 PF01336 OB-fold nucleic acid binding domain BJD11_15330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD11_15330 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD11_15330 PF14579 Helix-hairpin-helix motif BJD11_15335 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BJD11_15370 PF03551 Transcriptional regulator PadR-like family BJD11_15390 PF02592 Putative vitamin uptake transporter BJD11_15400 PF02574 Homocysteine S-methyltransferase BJD11_15405 PF00324 Amino acid permease BJD11_15420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD11_15440 PF09334 tRNA synthetases class I (M) BJD11_15440 PF01588 Putative tRNA binding domain BJD11_15450 PF04060 Putative Fe-S cluster BJD11_15470 PF04545 Sigma-70, region 4 BJD11_15470 PF04542 Sigma-70 region 2 BJD11_15515 PF01042 Endoribonuclease L-PSP BJD11_15525 PF09924 Uncharacterised conserved protein (DUF2156) BJD11_15525 PF03706 Lysylphosphatidylglycerol synthase TM region BJD11_15560 PF07690 Major Facilitator Superfamily BJD11_15565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD11_15575 PF03831 PhnA domain BJD11_15575 PF08274 PhnA Zinc-Ribbon BJD11_15610 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD11_15620 PF07043 Protein of unknown function (DUF1328) BJD11_15625 PF01863 Protein of unknown function DUF45 BJD11_15640 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BJD11_15640 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BJD11_15645 PF12951 Passenger-associated-transport-repeat BJD11_15645 PF03797 Autotransporter beta-domain BJD11_15645 PF00082 Subtilase family BJD11_15650 PF00108 Thiolase, N-terminal domain BJD11_15650 PF02803 Thiolase, C-terminal domain BJD11_15665 PF00990 Diguanylate cyclase, GGDEF domain BJD11_15665 PF00072 Response regulator receiver domain BJD11_15685 PF04679 ATP dependent DNA ligase C terminal region BJD11_15685 PF01068 ATP dependent DNA ligase domain BJD11_15685 PF04675 DNA ligase N terminus BJD11_15695 PF04679 ATP dependent DNA ligase C terminal region BJD11_15695 PF01068 ATP dependent DNA ligase domain BJD11_15695 PF04675 DNA ligase N terminus BJD11_15700 PF00270 DEAD/DEAH box helicase BJD11_15700 PF08494 DEAD/H associated BJD11_15700 PF00271 Helicase conserved C-terminal domain BJD11_15715 PF00313 'Cold-shock' DNA-binding domain BJD11_15720 PF01048 Phosphorylase superfamily BJD11_15730 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD11_15735 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BJD11_15740 PF01593 Flavin containing amine oxidoreductase BJD11_15745 PF01323 DSBA-like thioredoxin domain BJD11_15755 PF05958 tRNA (Uracil-5-)-methyltransferase BJD11_15770 PF11967 Recombination protein O N terminal BJD11_15770 PF02565 Recombination protein O C terminal BJD11_15780 PF13276 HTH-like domain BJD11_15780 PF13683 Integrase core domain BJD11_15785 PF01527 Transposase BJD11_15795 PF01926 50S ribosome-binding GTPase BJD11_15795 PF07650 KH domain BJD11_15800 PF14622 Ribonuclease-III-like BJD11_15800 PF00035 Double-stranded RNA binding motif BJD11_15810 PF10502 Signal peptidase, peptidase S26 BJD11_15815 PF00679 Elongation factor G C-terminus BJD11_15815 PF00009 Elongation factor Tu GTP binding domain BJD11_15815 PF03144 Elongation factor Tu domain 2 BJD11_15815 PF06421 GTP-binding protein LepA C-terminus BJD11_15830 PF04542 Sigma-70 region 2 BJD11_15830 PF08281 Sigma-70, region 4 BJD11_15835 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD11_15835 PF00378 Enoyl-CoA hydratase/isomerase BJD11_15835 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD11_15840 PF01545 Cation efflux family BJD11_15845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD11_15845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD11_15850 PF00378 Enoyl-CoA hydratase/isomerase BJD11_15850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD11_15850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD11_15855 PF00378 Enoyl-CoA hydratase/isomerase BJD11_15860 PF02770 Acyl-CoA dehydrogenase, middle domain BJD11_15860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD11_15860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD11_15865 PF00171 Aldehyde dehydrogenase family BJD11_15870 PF09856 Predicted transcriptional regulator (DUF2083) BJD11_15870 PF01381 Helix-turn-helix BJD11_15870 PF06114 IrrE N-terminal-like domain BJD11_15880 PF07745 Glycosyl hydrolase family 53 BJD11_15885 PF16355 Domain of unknown function (DUF4982) BJD11_15885 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD11_15885 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD11_15885 PF00703 Glycosyl hydrolases family 2 BJD11_15885 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BJD11_15900 PF01527 Transposase BJD11_15905 PF13683 Integrase core domain BJD11_15905 PF13276 HTH-like domain BJD11_15920 PF00488 MutS domain V BJD11_15920 PF05190 MutS family domain IV BJD11_15920 PF01624 MutS domain I BJD11_15920 PF05188 MutS domain II BJD11_15920 PF05192 MutS domain III BJD11_15930 PF00141 Peroxidase BJD11_15935 PF01479 S4 domain BJD11_15955 PF01554 MatE BJD11_15960 PF01245 Ribosomal protein L19 BJD11_15965 PF01746 tRNA (Guanine-1)-methyltransferase BJD11_15970 PF05239 PRC-barrel domain BJD11_15970 PF01782 RimM N-terminal domain BJD11_15975 PF00886 Ribosomal protein S16 BJD11_15980 PF01063 Amino-transferase class IV BJD11_15990 PF02978 Signal peptide binding domain BJD11_15990 PF02881 SRP54-type protein, helical bundle domain BJD11_15990 PF00448 SRP54-type protein, GTPase domain BJD11_15995 PF01578 Cytochrome C assembly protein BJD11_16000 PF01263 Aldose 1-epimerase BJD11_16010 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BJD11_16015 PF00072 Response regulator receiver domain BJD11_16020 PF00072 Response regulator receiver domain BJD11_16020 PF13426 PAS domain BJD11_16020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16025 PF01627 Hpt domain BJD11_16025 PF00672 HAMP domain BJD11_16025 PF00072 Response regulator receiver domain BJD11_16025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD11_16025 PF00512 His Kinase A (phospho-acceptor) domain BJD11_16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16030 PF01739 CheR methyltransferase, SAM binding domain BJD11_16030 PF03705 CheR methyltransferase, all-alpha domain BJD11_16035 PF01339 CheB methylesterase BJD11_16040 PF00512 His Kinase A (phospho-acceptor) domain BJD11_16040 PF02702 Osmosensitive K+ channel His kinase sensor domain BJD11_16040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16040 PF13492 GAF domain BJD11_16040 PF13493 Domain of unknown function (DUF4118) BJD11_16045 PF07237 Protein of unknown function (DUF1428) BJD11_16050 PF00085 Thioredoxin BJD11_16055 PF00593 TonB dependent receptor BJD11_16055 PF07715 TonB-dependent Receptor Plug Domain BJD11_16060 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD11_16060 PF04616 Glycosyl hydrolases family 43 BJD11_16065 PF00512 His Kinase A (phospho-acceptor) domain BJD11_16065 PF13188 PAS domain BJD11_16065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16065 PF08448 PAS fold BJD11_16065 PF00072 Response regulator receiver domain BJD11_16070 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD11_16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16070 PF00512 His Kinase A (phospho-acceptor) domain BJD11_16070 PF01627 Hpt domain BJD11_16070 PF00072 Response regulator receiver domain BJD11_16070 PF00672 HAMP domain BJD11_16080 PF13581 Histidine kinase-like ATPase domain BJD11_16085 PF01740 STAS domain BJD11_16090 PF08678 Rsbr N terminal BJD11_16090 PF01740 STAS domain BJD11_16100 PF00183 Hsp90 protein BJD11_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16105 PF12833 Helix-turn-helix domain BJD11_16115 PF05656 Protein of unknown function (DUF805) BJD11_16120 PF18073 Rubredoxin metal binding domain BJD11_16130 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BJD11_16135 PF00510 Cytochrome c oxidase subunit III BJD11_16140 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD11_16145 PF06481 COX Aromatic Rich Motif BJD11_16145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BJD11_16155 PF02401 LytB protein BJD11_16160 PF01252 Signal peptidase (SPase) II BJD11_16165 PF00133 tRNA synthetases class I (I, L, M and V) BJD11_16165 PF08264 Anticodon-binding domain of tRNA BJD11_16165 PF06827 Zinc finger found in FPG and IleRS BJD11_16170 PF06574 FAD synthetase BJD11_16170 PF01687 Riboflavin kinase BJD11_16175 PF03023 Lipid II flippase MurJ BJD11_16180 PF01649 Ribosomal protein S20 BJD11_16185 PF01018 GTP1/OBG BJD11_16185 PF01926 50S ribosome-binding GTPase BJD11_16190 PF01016 Ribosomal L27 protein BJD11_16195 PF00829 Ribosomal prokaryotic L21 protein BJD11_16200 PF17760 UvrA interaction domain BJD11_16200 PF00005 ABC transporter BJD11_16200 PF17755 UvrA DNA-binding domain BJD11_16215 PF00378 Enoyl-CoA hydratase/isomerase BJD11_16230 PF08281 Sigma-70, region 4 BJD11_16230 PF04542 Sigma-70 region 2 BJD11_16245 PF04377 Arginine-tRNA-protein transferase, C terminus BJD11_16245 PF04376 Arginine-tRNA-protein transferase, N terminus BJD11_16265 PF02222 ATP-grasp domain BJD11_16290 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD11_16305 PF00072 Response regulator receiver domain BJD11_16305 PF00196 Bacterial regulatory proteins, luxR family BJD11_16310 PF07730 Histidine kinase BJD11_16325 PF05209 Septum formation inhibitor MinC, N-terminal domain BJD11_16325 PF03775 Septum formation inhibitor MinC, C-terminal domain BJD11_16330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD11_16335 PF03776 Septum formation topological specificity factor MinE BJD11_16345 PF00512 His Kinase A (phospho-acceptor) domain BJD11_16345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_16345 PF08521 Two-component sensor kinase N-terminal BJD11_16350 PF00072 Response regulator receiver domain BJD11_16350 PF00486 Transcriptional regulatory protein, C terminal BJD11_16365 PF00884 Sulfatase BJD11_16365 PF08019 Phosphoethanolamine transferase EptA/EptB BJD11_16385 PF07690 Major Facilitator Superfamily BJD11_16390 PF00005 ABC transporter BJD11_16390 PF03412 Peptidase C39 family BJD11_16390 PF00664 ABC transporter transmembrane region BJD11_16410 PF02347 Glycine cleavage system P-protein BJD11_16415 PF00135 Carboxylesterase family BJD11_16420 PF00248 Aldo/keto reductase family BJD11_16425 PF00199 Catalase BJD11_16425 PF06628 Catalase-related immune-responsive BJD11_16425 PF18011 C-terminal domain found in long catalases BJD11_16450 PF02311 AraC-like ligand binding domain BJD11_16450 PF12833 Helix-turn-helix domain BJD11_16465 PF07676 WD40-like Beta Propeller Repeat BJD11_16465 PF00326 Prolyl oligopeptidase family BJD11_16465 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD11_16480 PF03169 OPT oligopeptide transporter protein BJD11_16490 PF00326 Prolyl oligopeptidase family BJD11_16500 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD11_16500 PF14579 Helix-hairpin-helix motif BJD11_16500 PF02811 PHP domain BJD11_16500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD11_16520 PF00717 Peptidase S24-like BJD11_16520 PF01726 LexA DNA binding domain BJD11_16555 PF01799 [2Fe-2S] binding domain BJD11_16555 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD11_16560 PF03450 CO dehydrogenase flavoprotein C-terminal domain BJD11_16560 PF00941 FAD binding domain in molybdopterin dehydrogenase BJD11_16565 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD11_16565 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD11_16570 PF17755 UvrA DNA-binding domain BJD11_16590 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_16600 PF00106 short chain dehydrogenase BJD11_16610 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD11_16610 PF07971 Glycosyl hydrolase family 92 BJD11_16620 PF00723 Glycosyl hydrolases family 15 BJD11_16635 PF00300 Histidine phosphatase superfamily (branch 1) BJD11_16635 PF13456 Reverse transcriptase-like BJD11_16670 PF18766 SWI2/SNF2 ATPase BJD11_16670 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BJD11_16670 PF12008 Type I restriction and modification enzyme - subunit R C terminal BJD11_16675 PF13276 HTH-like domain BJD11_16675 PF13683 Integrase core domain BJD11_16680 PF01527 Transposase BJD11_16695 PF02384 N-6 DNA Methylase BJD11_16695 PF12161 HsdM N-terminal domain BJD11_16740 PF00440 Bacterial regulatory proteins, tetR family BJD11_16755 PF01433 Peptidase family M1 domain BJD11_16755 PF11838 ERAP1-like C-terminal domain BJD11_16760 PF00709 Adenylosuccinate synthetase BJD11_16770 PF01145 SPFH domain / Band 7 family BJD11_16775 PF01145 SPFH domain / Band 7 family BJD11_16775 PF12221 Bacterial membrane protein N terminal BJD11_16780 PF00072 Response regulator receiver domain BJD11_16785 PF00226 DnaJ domain BJD11_16785 PF01556 DnaJ C terminal domain BJD11_16805 PF00905 Penicillin binding protein transpeptidase domain BJD11_16805 PF00912 Transglycosylase BJD11_16805 PF06832 Penicillin-Binding Protein C-terminus Family BJD11_16825 PF01835 MG2 domain BJD11_16825 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BJD11_16825 PF00207 Alpha-2-macroglobulin family BJD11_16825 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BJD11_16825 PF07703 Alpha-2-macroglobulin bait region domain BJD11_16825 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BJD11_16825 PF17962 Bacterial macroglobulin domain 6 BJD11_16825 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BJD11_16840 PF07715 TonB-dependent Receptor Plug Domain BJD11_16840 PF00593 TonB dependent receptor BJD11_16845 PF04303 PrpF protein BJD11_16855 PF00694 Aconitase C-terminal domain BJD11_16855 PF00330 Aconitase family (aconitate hydratase) BJD11_16860 PF00285 Citrate synthase, C-terminal domain BJD11_16870 PF00158 Sigma-54 interaction domain BJD11_16870 PF02954 Bacterial regulatory protein, Fis family BJD11_16870 PF06506 Propionate catabolism activator BJD11_16900 PF09115 DNA polymerase III, delta subunit, C terminal BJD11_16905 PF02618 YceG-like family BJD11_16910 PF00425 chorismate binding enzyme BJD11_16910 PF04715 Anthranilate synthase component I, N terminal region BJD11_16915 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD11_16915 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD11_16920 PF00550 Phosphopantetheine attachment site BJD11_16930 PF00698 Acyl transferase domain BJD11_16940 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD11_16940 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD11_16945 PF01783 Ribosomal L32p protein family BJD11_16960 PF13683 Integrase core domain BJD11_16960 PF13276 HTH-like domain BJD11_16965 PF01527 Transposase BJD11_16985 PF07726 ATPase family associated with various cellular activities (AAA) BJD11_16985 PF17863 AAA lid domain BJD11_16995 PF13559 Domain of unknown function (DUF4129) BJD11_16995 PF01841 Transglutaminase-like superfamily BJD11_16995 PF11992 Domain of unknown function (DUF3488) BJD11_17005 PF01230 HIT domain BJD11_17010 PF02132 RecR protein BJD11_17010 PF13662 Toprim domain BJD11_17015 PF02575 YbaB/EbfC DNA-binding family BJD11_17020 PF12170 DNA polymerase III tau subunit V interacting with alpha BJD11_17020 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BJD11_17020 PF12169 DNA polymerase III subunits gamma and tau domain III BJD11_17065 PF13276 HTH-like domain BJD11_17065 PF00665 Integrase core domain BJD11_17065 PF13333 Integrase core domain BJD11_17085 PF04002 RadC-like JAB domain BJD11_17090 PF13276 HTH-like domain BJD11_17090 PF13683 Integrase core domain BJD11_17095 PF01527 Transposase BJD11_17110 PF01555 DNA methylase BJD11_17130 PF02391 MoaE protein BJD11_17135 PF02597 ThiS family BJD11_17140 PF01967 MoaC family BJD11_17150 PF04055 Radical SAM superfamily BJD11_17150 PF06463 Molybdenum Cofactor Synthesis C BJD11_17155 PF00753 Metallo-beta-lactamase superfamily BJD11_17155 PF12706 Beta-lactamase superfamily domain BJD11_17165 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BJD11_17190 PF13276 HTH-like domain BJD11_17190 PF13683 Integrase core domain BJD11_17195 PF01527 Transposase BJD11_17200 PF01527 Transposase BJD11_17205 PF13276 HTH-like domain BJD11_17205 PF13683 Integrase core domain BJD11_17210 PF02384 N-6 DNA Methylase BJD11_17220 PF16793 RepB DNA-primase from phage plasmid BJD11_17220 PF03389 MobA/MobL family BJD11_17240 PF00929 Exonuclease BJD11_17245 PF00075 RNase H BJD11_17255 PF00753 Metallo-beta-lactamase superfamily BJD11_17255 PF16123 Hydroxyacylglutathione hydrolase C-terminus BJD11_17260 PF05257 CHAP domain BJD11_17260 PF01476 LysM domain BJD11_17285 PF00216 Bacterial DNA-binding protein BJD11_17290 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_17290 PF02190 ATP-dependent protease La (LON) substrate-binding domain BJD11_17290 PF05362 Lon protease (S16) C-terminal proteolytic domain BJD11_17295 PF10431 C-terminal, D2-small domain, of ClpB protein BJD11_17295 PF06689 ClpX C4-type zinc finger BJD11_17295 PF07724 AAA domain (Cdc48 subfamily) BJD11_17300 PF00574 Clp protease BJD11_17305 PF05697 Bacterial trigger factor protein (TF) BJD11_17305 PF05698 Bacterial trigger factor protein (TF) C-terminus BJD11_17315 PF00989 PAS fold BJD11_17315 PF00512 His Kinase A (phospho-acceptor) domain BJD11_17315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_17345 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD11_17345 PF18324 Hypothetical protein TT1725 BJD11_17355 PF00462 Glutaredoxin BJD11_17360 PF13181 Tetratricopeptide repeat BJD11_17360 PF01435 Peptidase family M48 BJD11_17365 PF00072 Response regulator receiver domain BJD11_17365 PF00486 Transcriptional regulatory protein, C terminal BJD11_17370 PF00512 His Kinase A (phospho-acceptor) domain BJD11_17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_17370 PF00989 PAS fold BJD11_17370 PF11808 Phosphate regulon sensor protein PhoR BJD11_17375 PF13090 Polyphosphate kinase C-terminal domain 2 BJD11_17375 PF02503 Polyphosphate kinase middle domain BJD11_17375 PF13089 Polyphosphate kinase N-terminal domain BJD11_17375 PF17941 Polyphosphate kinase C-terminal domain 1 BJD11_17380 PF02541 Ppx/GppA phosphatase family BJD11_17385 PF13439 Glycosyltransferase Family 4 BJD11_17385 PF00534 Glycosyl transferases group 1 BJD11_17390 PF01569 PAP2 superfamily BJD11_17395 PF00149 Calcineurin-like phosphoesterase BJD11_17410 PF04305 Protein of unknown function (DUF455) BJD11_17420 PF00156 Phosphoribosyl transferase domain BJD11_17435 PF08245 Mur ligase middle domain BJD11_17435 PF02875 Mur ligase family, glutamate ligase domain BJD11_17440 PF00300 Histidine phosphatase superfamily (branch 1) BJD11_17455 PF01609 Transposase DDE domain BJD11_17455 PF05598 Transposase domain (DUF772) BJD11_17465 PF05506 Domain of unknown function (DUF756) BJD11_17465 PF04185 Phosphoesterase family BJD11_17475 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_17475 PF00107 Zinc-binding dehydrogenase BJD11_17485 PF00005 ABC transporter BJD11_17485 PF12857 TOBE-like domain BJD11_17485 PF17850 CysA C-terminal regulatory domain BJD11_17490 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_17495 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_17505 PF00155 Aminotransferase class I and II BJD11_17515 PF00849 RNA pseudouridylate synthase BJD11_17525 PF00223 Photosystem I psaA/psaB protein BJD11_17525 PF00691 OmpA family BJD11_17535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD11_17535 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_17555 PF02798 Glutathione S-transferase, N-terminal domain BJD11_17555 PF00043 Glutathione S-transferase, C-terminal domain BJD11_17560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BJD11_17560 PF00056 lactate/malate dehydrogenase, NAD binding domain BJD11_17565 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD11_17580 PF01425 Amidase BJD11_17590 PF01474 Class-II DAHP synthetase family BJD11_17610 PF02600 Disulfide bond formation protein DsbB BJD11_17615 PF01196 Ribosomal protein L17 BJD11_17620 PF01000 RNA polymerase Rpb3/RpoA insert domain BJD11_17620 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BJD11_17620 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BJD11_17625 PF01479 S4 domain BJD11_17625 PF00163 Ribosomal protein S4/S9 N-terminal domain BJD11_17630 PF00411 Ribosomal protein S11 BJD11_17635 PF00416 Ribosomal protein S13/S18 BJD11_17640 PF00344 SecY translocase BJD11_17645 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BJD11_17650 PF00327 Ribosomal protein L30p/L7e BJD11_17655 PF00333 Ribosomal protein S5, N-terminal domain BJD11_17655 PF03719 Ribosomal protein S5, C-terminal domain BJD11_17660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BJD11_17665 PF00347 Ribosomal protein L6 BJD11_17670 PF00410 Ribosomal protein S8 BJD11_17675 PF00253 Ribosomal protein S14p/S29e BJD11_17680 PF00281 Ribosomal protein L5 BJD11_17680 PF00673 ribosomal L5P family C-terminus BJD11_17685 PF00467 KOW motif BJD11_17685 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BJD11_17690 PF00238 Ribosomal protein L14p/L23e BJD11_17695 PF00366 Ribosomal protein S17 BJD11_17700 PF00831 Ribosomal L29 protein BJD11_17705 PF00252 Ribosomal protein L16p/L10e BJD11_17710 PF00189 Ribosomal protein S3, C-terminal domain BJD11_17710 PF07650 KH domain BJD11_17715 PF00237 Ribosomal protein L22p/L17e BJD11_17720 PF00203 Ribosomal protein S19 BJD11_17725 PF00181 Ribosomal Proteins L2, RNA binding domain BJD11_17725 PF03947 Ribosomal Proteins L2, C-terminal domain BJD11_17730 PF00276 Ribosomal protein L23 BJD11_17735 PF00573 Ribosomal protein L4/L1 family BJD11_17740 PF00297 Ribosomal protein L3 BJD11_17745 PF00338 Ribosomal protein S10p/S20e BJD11_17755 PF03143 Elongation factor Tu C-terminal domain BJD11_17755 PF03144 Elongation factor Tu domain 2 BJD11_17755 PF00009 Elongation factor Tu GTP binding domain BJD11_17760 PF00009 Elongation factor Tu GTP binding domain BJD11_17760 PF03144 Elongation factor Tu domain 2 BJD11_17760 PF00679 Elongation factor G C-terminus BJD11_17760 PF14492 Elongation Factor G, domain II BJD11_17760 PF03764 Elongation factor G, domain IV BJD11_17765 PF00177 Ribosomal protein S7p/S5e BJD11_17770 PF00164 Ribosomal protein S12/S23 BJD11_17775 PF04998 RNA polymerase Rpb1, domain 5 BJD11_17775 PF04983 RNA polymerase Rpb1, domain 3 BJD11_17775 PF05000 RNA polymerase Rpb1, domain 4 BJD11_17775 PF00623 RNA polymerase Rpb1, domain 2 BJD11_17775 PF04997 RNA polymerase Rpb1, domain 1 BJD11_17780 PF04565 RNA polymerase Rpb2, domain 3 BJD11_17780 PF04561 RNA polymerase Rpb2, domain 2 BJD11_17780 PF00562 RNA polymerase Rpb2, domain 6 BJD11_17780 PF04563 RNA polymerase beta subunit BJD11_17780 PF04560 RNA polymerase Rpb2, domain 7 BJD11_17780 PF10385 RNA polymerase beta subunit external 1 domain BJD11_17785 PF00542 Ribosomal protein L7/L12 C-terminal domain BJD11_17785 PF16320 Ribosomal protein L7/L12 dimerisation domain BJD11_17790 PF00466 Ribosomal protein L10 BJD11_17795 PF00687 Ribosomal protein L1p/L10e family BJD11_17800 PF03946 Ribosomal protein L11, N-terminal domain BJD11_17800 PF00298 Ribosomal protein L11, RNA binding domain BJD11_17805 PF00467 KOW motif BJD11_17805 PF02357 Transcription termination factor nusG BJD11_17810 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BJD11_17820 PF00009 Elongation factor Tu GTP binding domain BJD11_17820 PF03144 Elongation factor Tu domain 2 BJD11_17820 PF03143 Elongation factor Tu C-terminal domain BJD11_17840 PF06071 Protein of unknown function (DUF933) BJD11_17840 PF01926 50S ribosome-binding GTPase BJD11_17845 PF01195 Peptidyl-tRNA hydrolase BJD11_17850 PF01386 Ribosomal L25p family BJD11_17850 PF14693 Ribosomal protein TL5, C-terminal domain BJD11_17855 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BJD11_17855 PF14572 Phosphoribosyl synthetase-associated domain BJD11_17865 PF00288 GHMP kinases N terminal domain BJD11_17865 PF08544 GHMP kinases C terminal BJD11_17870 PF03550 Outer membrane lipoprotein LolB BJD11_17880 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BJD11_17880 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BJD11_17880 PF01488 Shikimate / quinate 5-dehydrogenase BJD11_17885 PF00472 RF-1 domain BJD11_17885 PF03462 PCRF domain BJD11_17900 PF00994 Probable molybdopterin binding domain BJD11_17905 PF03976 Polyphosphate kinase 2 (PPK2) BJD11_17915 PF00708 Acylphosphatase BJD11_17920 PF08534 Redoxin BJD11_17925 PF03631 Virulence factor BrkB BJD11_17930 PF03358 NADPH-dependent FMN reductase BJD11_17940 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain BJD11_17940 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BJD11_17950 PF04073 Aminoacyl-tRNA editing domain BJD11_17955 PF00082 Subtilase family BJD11_17955 PF04151 Bacterial pre-peptidase C-terminal domain BJD11_17960 PF00082 Subtilase family BJD11_17960 PF04151 Bacterial pre-peptidase C-terminal domain BJD11_17965 PF04151 Bacterial pre-peptidase C-terminal domain BJD11_17965 PF00082 Subtilase family BJD11_17970 PF01063 Amino-transferase class IV BJD11_17985 PF02233 NAD(P) transhydrogenase beta subunit BJD11_17990 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BJD11_18010 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BJD11_18010 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BJD11_18010 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BJD11_18030 PF01612 3'-5' exonuclease BJD11_18030 PF00476 DNA polymerase family A BJD11_18030 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD11_18030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD11_18035 PF00293 NUDIX domain BJD11_18045 PF00561 alpha/beta hydrolase fold BJD11_18050 PF17827 PrmC N-terminal domain BJD11_18050 PF05175 Methyltransferase small domain BJD11_18055 PF00578 AhpC/TSA family BJD11_18055 PF10417 C-terminal domain of 1-Cys peroxiredoxin BJD11_18060 PF13192 Thioredoxin domain BJD11_18060 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_18065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_18065 PF03466 LysR substrate binding domain BJD11_18075 PF14760 Rnk N-terminus BJD11_18075 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD11_18080 PF00923 Transaldolase/Fructose-6-phosphate aldolase BJD11_18090 PF01625 Peptide methionine sulfoxide reductase BJD11_18100 PF00072 Response regulator receiver domain BJD11_18100 PF00196 Bacterial regulatory proteins, luxR family BJD11_18105 PF00672 HAMP domain BJD11_18105 PF00072 Response regulator receiver domain BJD11_18105 PF01627 Hpt domain BJD11_18105 PF00512 His Kinase A (phospho-acceptor) domain BJD11_18105 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD11_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_18110 PF00072 Response regulator receiver domain BJD11_18110 PF00990 Diguanylate cyclase, GGDEF domain BJD11_18125 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BJD11_18125 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD11_18135 PF00892 EamA-like transporter family BJD11_18165 PF01728 FtsJ-like methyltransferase BJD11_18165 PF18125 RlmM ferredoxin-like domain BJD11_18170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD11_18170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD11_18175 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD11_18195 PF00378 Enoyl-CoA hydratase/isomerase BJD11_18200 PF00171 Aldehyde dehydrogenase family BJD11_18205 PF13193 AMP-binding enzyme C-terminal domain BJD11_18205 PF00501 AMP-binding enzyme BJD11_18210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_18210 PF03466 LysR substrate binding domain BJD11_18215 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD11_18215 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit BJD11_18220 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD11_18225 PF00392 Bacterial regulatory proteins, gntR family BJD11_18225 PF07729 FCD domain BJD11_18245 PF01494 FAD binding domain BJD11_18250 PF01494 FAD binding domain BJD11_18265 PF01923 Cobalamin adenosyltransferase BJD11_18270 PF00850 Histone deacetylase domain BJD11_18275 PF03968 OstA-like protein BJD11_18275 PF04453 LPS transport system D BJD11_18280 PF09312 SurA N-terminal domain BJD11_18280 PF00639 PPIC-type PPIASE domain BJD11_18285 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BJD11_18290 PF00398 Ribosomal RNA adenine dimethylase BJD11_18295 PF04379 ApaG domain BJD11_18300 PF00149 Calcineurin-like phosphoesterase BJD11_18305 PF00186 Dihydrofolate reductase BJD11_18315 PF00303 Thymidylate synthase BJD11_18320 PF01790 Prolipoprotein diacylglyceryl transferase BJD11_18340 PF01219 Prokaryotic diacylglycerol kinase BJD11_18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_18350 PF08521 Two-component sensor kinase N-terminal BJD11_18350 PF00512 His Kinase A (phospho-acceptor) domain BJD11_18355 PF00072 Response regulator receiver domain BJD11_18355 PF00486 Transcriptional regulatory protein, C terminal BJD11_18360 PF13472 GDSL-like Lipase/Acylhydrolase family BJD11_18365 PF00005 ABC transporter BJD11_18375 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BJD11_18385 PF00005 ABC transporter BJD11_18390 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_18410 PF07715 TonB-dependent Receptor Plug Domain BJD11_18410 PF00593 TonB dependent receptor BJD11_18420 PF00248 Aldo/keto reductase family BJD11_18430 PF07662 Na+ dependent nucleoside transporter C-terminus BJD11_18430 PF07670 Nucleoside recognition BJD11_18430 PF01773 Na+ dependent nucleoside transporter N-terminus BJD11_18435 PF00294 pfkB family carbohydrate kinase BJD11_18445 PF01207 Dihydrouridine synthase (Dus) BJD11_18450 PF13649 Methyltransferase domain BJD11_18460 PF00438 S-adenosylmethionine synthetase, N-terminal domain BJD11_18460 PF02773 S-adenosylmethionine synthetase, C-terminal domain BJD11_18460 PF02772 S-adenosylmethionine synthetase, central domain BJD11_18465 PF00328 Histidine phosphatase superfamily (branch 2) BJD11_18480 PF00691 OmpA family BJD11_18480 PF01389 OmpA-like transmembrane domain BJD11_18500 PF00311 Phosphoenolpyruvate carboxylase BJD11_18510 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BJD11_18510 PF05221 S-adenosyl-L-homocysteine hydrolase BJD11_18515 PF13649 Methyltransferase domain BJD11_18550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD11_18565 PF00082 Subtilase family BJD11_18565 PF09286 Pro-kumamolisin, activation domain BJD11_18570 PF08659 KR domain BJD11_18570 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD11_18570 PF00698 Acyl transferase domain BJD11_18570 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD11_18570 PF00107 Zinc-binding dehydrogenase BJD11_18570 PF00550 Phosphopantetheine attachment site BJD11_18570 PF14765 Polyketide synthase dehydratase BJD11_18570 PF16197 Ketoacyl-synthetase C-terminal extension BJD11_18570 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_18585 PF02219 Methylenetetrahydrofolate reductase BJD11_18595 PF00293 NUDIX domain BJD11_18600 PF07517 SecA DEAD-like domain BJD11_18600 PF01043 SecA preprotein cross-linking domain BJD11_18600 PF07516 SecA Wing and Scaffold domain BJD11_18600 PF02810 SEC-C motif BJD11_18605 PF01476 LysM domain BJD11_18605 PF08525 Opacity-associated protein A N-terminal motif BJD11_18605 PF01551 Peptidase family M23 BJD11_18615 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BJD11_18620 PF12327 FtsZ family, C-terminal domain BJD11_18620 PF00091 Tubulin/FtsZ family, GTPase domain BJD11_18625 PF02491 SHS2 domain inserted in FTSA BJD11_18630 PF03799 Cell division protein FtsQ BJD11_18630 PF08478 POTRA domain, FtsQ-type BJD11_18635 PF01820 D-ala D-ala ligase N-terminus BJD11_18635 PF07478 D-ala D-ala ligase C-terminus BJD11_18640 PF08245 Mur ligase middle domain BJD11_18640 PF01225 Mur ligase family, catalytic domain BJD11_18640 PF02875 Mur ligase family, glutamate ligase domain BJD11_18645 PF03033 Glycosyltransferase family 28 N-terminal domain BJD11_18645 PF04101 Glycosyltransferase family 28 C-terminal domain BJD11_18650 PF01098 Cell cycle protein BJD11_18655 PF00953 Glycosyl transferase family 4 BJD11_18660 PF01225 Mur ligase family, catalytic domain BJD11_18660 PF02875 Mur ligase family, glutamate ligase domain BJD11_18660 PF08245 Mur ligase middle domain BJD11_18665 PF08245 Mur ligase middle domain BJD11_18665 PF01225 Mur ligase family, catalytic domain BJD11_18665 PF02875 Mur ligase family, glutamate ligase domain BJD11_18670 PF00905 Penicillin binding protein transpeptidase domain BJD11_18670 PF03717 Penicillin-binding Protein dimerisation domain BJD11_18680 PF04999 Cell division protein FtsL BJD11_18685 PF01795 MraW methylase family BJD11_18690 PF02381 MraZ protein, putative antitoxin-like BJD11_18715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD11_18725 PF02021 Uncharacterised protein family UPF0102 BJD11_18730 PF04307 LexA-binding, inner membrane-associated putative hydrolase BJD11_18735 PF02913 FAD linked oxidases, C-terminal domain BJD11_18735 PF01565 FAD binding domain BJD11_18745 PF00072 Response regulator receiver domain BJD11_18745 PF00486 Transcriptional regulatory protein, C terminal BJD11_18750 PF02702 Osmosensitive K+ channel His kinase sensor domain BJD11_18750 PF13492 GAF domain BJD11_18750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_18750 PF00512 His Kinase A (phospho-acceptor) domain BJD11_18750 PF13493 Domain of unknown function (DUF4118) BJD11_18755 PF02669 K+-transporting ATPase, c chain BJD11_18765 PF03814 Potassium-transporting ATPase A subunit BJD11_18790 PF00586 AIR synthase related protein, N-terminal domain BJD11_18790 PF02769 AIR synthase related protein, C-terminal domain BJD11_18795 PF01029 NusB family BJD11_18800 PF00885 6,7-dimethyl-8-ribityllumazine synthase BJD11_18805 PF00925 GTP cyclohydrolase II BJD11_18805 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BJD11_18810 PF00677 Lumazine binding domain BJD11_18820 PF01872 RibD C-terminal domain BJD11_18820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BJD11_18830 PF03477 ATP cone domain BJD11_18840 PF00464 Serine hydroxymethyltransferase BJD11_18850 PF12848 ABC transporter BJD11_18850 PF00005 ABC transporter BJD11_18860 PF00756 Putative esterase BJD11_18865 PF04828 Glutathione-dependent formaldehyde-activating enzyme BJD11_18870 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_18870 PF00107 Zinc-binding dehydrogenase BJD11_18875 PF02583 Metal-sensitive transcriptional repressor BJD11_18890 PF00072 Response regulator receiver domain BJD11_18890 PF00486 Transcriptional regulatory protein, C terminal BJD11_18895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_18895 PF00512 His Kinase A (phospho-acceptor) domain BJD11_18895 PF00672 HAMP domain BJD11_18900 PF04107 Glutamate-cysteine ligase family 2(GCS2) BJD11_18905 PF01926 50S ribosome-binding GTPase BJD11_18910 PF00034 Cytochrome c BJD11_18920 PF01323 DSBA-like thioredoxin domain BJD11_18935 PF02028 BCCT, betaine/carnitine/choline family transporter BJD11_18940 PF00171 Aldehyde dehydrogenase family BJD11_18945 PF00732 GMC oxidoreductase BJD11_18945 PF05199 GMC oxidoreductase BJD11_18950 PF01966 HD domain BJD11_18950 PF01743 Poly A polymerase head domain BJD11_18950 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD11_18965 PF01979 Amidohydrolase family BJD11_18970 PF01380 SIS domain BJD11_18975 PF00356 Bacterial regulatory proteins, lacI family BJD11_18980 PF07690 Major Facilitator Superfamily BJD11_19005 PF03934 Type II secretion system (T2SS), protein K BJD11_19010 PF07963 Prokaryotic N-terminal methylation motif BJD11_19010 PF11612 Type II secretion system (T2SS), protein J BJD11_19015 PF02501 Type II secretion system (T2SS), protein I BJD11_19015 PF07963 Prokaryotic N-terminal methylation motif BJD11_19020 PF12019 Type II transport protein GspH BJD11_19020 PF07963 Prokaryotic N-terminal methylation motif BJD11_19025 PF08334 Type II secretion system (T2SS), protein G BJD11_19025 PF07963 Prokaryotic N-terminal methylation motif BJD11_19030 PF00482 Type II secretion system (T2SS), protein F BJD11_19035 PF00437 Type II/IV secretion system protein BJD11_19040 PF00263 Bacterial type II and III secretion system protein BJD11_19040 PF03958 Bacterial type II/III secretion system short domain BJD11_19080 PF00106 short chain dehydrogenase BJD11_19085 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD11_19090 PF00512 His Kinase A (phospho-acceptor) domain BJD11_19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_19095 PF00072 Response regulator receiver domain BJD11_19100 PF01590 GAF domain BJD11_19100 PF08446 PAS fold BJD11_19100 PF00360 Phytochrome region BJD11_19100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_19100 PF00512 His Kinase A (phospho-acceptor) domain BJD11_19105 PF04972 BON domain BJD11_19110 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD11_19110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD11_19115 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BJD11_19115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD11_19150 PF00293 NUDIX domain BJD11_19150 PF01467 Cytidylyltransferase-like BJD11_19160 PF03466 LysR substrate binding domain BJD11_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_19170 PF17804 Tail specific protease N-terminal domain BJD11_19170 PF03572 Peptidase family S41 BJD11_19170 PF00595 PDZ domain BJD11_19170 PF11818 C-terminal domain of tail specific protease (DUF3340) BJD11_19175 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BJD11_19175 PF04055 Radical SAM superfamily BJD11_19180 PF03099 Biotin/lipoate A/B protein ligase family BJD11_19185 PF04359 Protein of unknown function (DUF493) BJD11_19195 PF07943 Penicillin-binding protein 5, C-terminal domain BJD11_19195 PF00768 D-alanyl-D-alanine carboxypeptidase BJD11_19205 PF05036 Sporulation related domain BJD11_19205 PF03330 Lytic transglycolase BJD11_19210 PF13406 Transglycosylase SLT domain BJD11_19215 PF00295 Glycosyl hydrolases family 28 BJD11_19220 PF01098 Cell cycle protein BJD11_19225 PF00905 Penicillin binding protein transpeptidase domain BJD11_19225 PF03717 Penicillin-binding Protein dimerisation domain BJD11_19235 PF04085 rod shape-determining protein MreC BJD11_19245 PF00294 pfkB family carbohydrate kinase BJD11_19250 PF01590 GAF domain BJD11_19250 PF02954 Bacterial regulatory protein, Fis family BJD11_19250 PF00158 Sigma-54 interaction domain BJD11_19260 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_19260 PF00107 Zinc-binding dehydrogenase BJD11_19295 PF13333 Integrase core domain BJD11_19295 PF13276 HTH-like domain BJD11_19295 PF00665 Integrase core domain BJD11_19320 PF11838 ERAP1-like C-terminal domain BJD11_19320 PF01433 Peptidase family M1 domain BJD11_19325 PF03707 Bacterial signalling protein N terminal repeat BJD11_19325 PF00990 Diguanylate cyclase, GGDEF domain BJD11_19325 PF00563 EAL domain BJD11_19330 PF01209 ubiE/COQ5 methyltransferase family BJD11_19340 PF13533 Biotin-lipoyl like BJD11_19345 PF13673 Acetyltransferase (GNAT) domain BJD11_19355 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_19355 PF07724 AAA domain (Cdc48 subfamily) BJD11_19355 PF10431 C-terminal, D2-small domain, of ClpB protein BJD11_19360 PF00227 Proteasome subunit BJD11_19365 PF00589 Phage integrase family BJD11_19365 PF02899 Phage integrase, N-terminal SAM-like domain BJD11_19375 PF01678 Diaminopimelate epimerase BJD11_19385 PF04304 Protein of unknown function (DUF454) BJD11_19390 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD11_19390 PF00326 Prolyl oligopeptidase family BJD11_19400 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD11_19400 PF00326 Prolyl oligopeptidase family BJD11_19440 PF03900 Porphobilinogen deaminase, C-terminal domain BJD11_19440 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BJD11_19445 PF00072 Response regulator receiver domain BJD11_19445 PF04397 LytTr DNA-binding domain BJD11_19450 PF06580 Histidine kinase BJD11_19450 PF07694 5TMR of 5TMR-LYT BJD11_19460 PF13632 Glycosyl transferase family group 2 BJD11_19475 PF00990 Diguanylate cyclase, GGDEF domain BJD11_19475 PF08448 PAS fold BJD11_19480 PF01740 STAS domain BJD11_19480 PF00916 Sulfate permease family BJD11_19485 PF00553 Cellulose binding domain BJD11_19485 PF00150 Cellulase (glycosyl hydrolase family 5) BJD11_19490 PF00672 HAMP domain BJD11_19490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD11_19490 PF02203 Tar ligand binding domain homologue BJD11_19495 PF00563 EAL domain BJD11_19495 PF00990 Diguanylate cyclase, GGDEF domain BJD11_19495 PF03707 Bacterial signalling protein N terminal repeat BJD11_19515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD11_19515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD11_19525 PF01204 Trehalase BJD11_19535 PF01544 CorA-like Mg2+ transporter protein BJD11_19545 PF00324 Amino acid permease BJD11_19560 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD11_19565 PF00892 EamA-like transporter family BJD11_19585 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_19590 PF02082 Transcriptional regulator BJD11_19595 PF00990 Diguanylate cyclase, GGDEF domain BJD11_19595 PF05230 MASE2 domain BJD11_19605 PF07759 Protein of unknown function (DUF1615) BJD11_19650 PF13409 Glutathione S-transferase, N-terminal domain BJD11_19660 PF00106 short chain dehydrogenase BJD11_19705 PF00106 short chain dehydrogenase BJD11_19730 PF01527 Transposase BJD11_19735 PF01527 Transposase BJD11_19740 PF00665 Integrase core domain BJD11_19740 PF13333 Integrase core domain BJD11_19740 PF13276 HTH-like domain BJD11_19765 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_19770 PF00456 Transketolase, thiamine diphosphate binding domain BJD11_19770 PF17831 Pyruvate dehydrogenase E1 component middle domain BJD11_19805 PF13419 Haloacid dehalogenase-like hydrolase BJD11_19810 PF07729 FCD domain BJD11_19810 PF00392 Bacterial regulatory proteins, gntR family BJD11_19820 PF00698 Acyl transferase domain BJD11_19825 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BJD11_19830 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BJD11_19840 PF01039 Carboxyl transferase domain BJD11_19845 PF06857 Malonate decarboxylase delta subunit (MdcD) BJD11_19850 PF16957 Malonate decarboxylase, alpha subunit, transporter BJD11_19880 PF04264 YceI-like domain BJD11_19885 PF00881 Nitroreductase family BJD11_19935 PF08335 GlnD PII-uridylyltransferase BJD11_19935 PF03710 Glutamate-ammonia ligase adenylyltransferase BJD11_19945 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD11_19970 PF00793 DAHP synthetase I family BJD11_19975 PF00593 TonB dependent receptor BJD11_19975 PF07715 TonB-dependent Receptor Plug Domain BJD11_19985 PF00118 TCP-1/cpn60 chaperonin family BJD11_19990 PF00166 Chaperonin 10 Kd subunit BJD11_20000 PF04231 Endonuclease I BJD11_20010 PF03091 CutA1 divalent ion tolerance protein BJD11_20015 PF11412 Disulphide bond corrector protein DsbC BJD11_20015 PF02683 Cytochrome C biogenesis protein transmembrane region BJD11_20020 PF01220 Dehydroquinase class II BJD11_20025 PF00364 Biotin-requiring enzyme BJD11_20035 PF02785 Biotin carboxylase C-terminal domain BJD11_20035 PF00289 Biotin carboxylase, N-terminal domain BJD11_20035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD11_20065 PF01381 Helix-turn-helix BJD11_20085 PF02954 Bacterial regulatory protein, Fis family BJD11_20120 PF00782 Dual specificity phosphatase, catalytic domain BJD11_20125 PF12146 Serine aminopeptidase, S33 BJD11_20125 PF12147 Putative methyltransferase BJD11_20130 PF01066 CDP-alcohol phosphatidyltransferase BJD11_20135 PF01808 AICARFT/IMPCHase bienzyme BJD11_20135 PF02142 MGS-like domain BJD11_20145 PF02843 Phosphoribosylglycinamide synthetase, C domain BJD11_20145 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BJD11_20145 PF02844 Phosphoribosylglycinamide synthetase, N domain BJD11_20150 PF12805 FUSC-like inner membrane protein yccS BJD11_20155 PF07690 Major Facilitator Superfamily BJD11_20180 PF03186 CobD/Cbib protein BJD11_20180 PF17113 Regulatory signalling modulator protein AmpE BJD11_20185 PF09297 NADH pyrophosphatase zinc ribbon domain BJD11_20185 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BJD11_20185 PF00293 NUDIX domain BJD11_20200 PF01521 Iron-sulphur cluster biosynthesis BJD11_20220 PF00072 Response regulator receiver domain BJD11_20220 PF00486 Transcriptional regulatory protein, C terminal BJD11_20230 PF00210 Ferritin-like domain BJD11_20240 PF00293 NUDIX domain BJD11_20255 PF00380 Ribosomal protein S9/S16 BJD11_20260 PF00572 Ribosomal protein L13 BJD11_20265 PF03232 Ubiquinone biosynthesis protein COQ7 BJD11_20270 PF00893 Small Multidrug Resistance protein BJD11_20275 PF02675 S-adenosylmethionine decarboxylase BJD11_20280 PF00325 Bacterial regulatory proteins, crp family BJD11_20280 PF00027 Cyclic nucleotide-binding domain BJD11_20290 PF00218 Indole-3-glycerol phosphate synthase BJD11_20295 PF02885 Glycosyl transferase family, helical bundle domain BJD11_20295 PF00591 Glycosyl transferase family, a/b domain BJD11_20305 PF00117 Glutamine amidotransferase class-I BJD11_20310 PF02384 N-6 DNA Methylase BJD11_20310 PF12161 HsdM N-terminal domain BJD11_20325 PF01420 Type I restriction modification DNA specificity domain BJD11_20330 PF12008 Type I restriction and modification enzyme - subunit R C terminal BJD11_20330 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BJD11_20330 PF18766 SWI2/SNF2 ATPase BJD11_20345 PF04715 Anthranilate synthase component I, N terminal region BJD11_20345 PF00425 chorismate binding enzyme BJD11_20350 PF00781 Diacylglycerol kinase catalytic domain BJD11_20355 PF00583 Acetyltransferase (GNAT) family BJD11_20360 PF00834 Ribulose-phosphate 3 epimerase family BJD11_20365 PF00226 DnaJ domain BJD11_20365 PF05099 Tellurite resistance protein TerB BJD11_20370 PF01259 SAICAR synthetase BJD11_20390 PF00182 Chitinase class I BJD11_20395 PF02868 Thermolysin metallopeptidase, alpha-helical domain BJD11_20395 PF01447 Thermolysin metallopeptidase, catalytic domain BJD11_20395 PF07504 Fungalysin/Thermolysin Propeptide Motif BJD11_20395 PF01483 Proprotein convertase P-domain BJD11_20410 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BJD11_20410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD11_20410 PF00361 Proton-conducting membrane transporter BJD11_20410 PF13244 Domain of unknown function (DUF4040) BJD11_20415 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BJD11_20420 PF00361 Proton-conducting membrane transporter BJD11_20425 PF01899 Na+/H+ ion antiporter subunit BJD11_20430 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BJD11_20435 PF03334 Na+/H+ antiporter subunit BJD11_20455 PF04209 homogentisate 1,2-dioxygenase BJD11_20460 PF04480 Protein of unknown function (DUF559) BJD11_20465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD11_20470 PF01047 MarR family BJD11_20480 PF00854 POT family BJD11_20495 PF00676 Dehydrogenase E1 component BJD11_20500 PF02779 Transketolase, pyrimidine binding domain BJD11_20500 PF02780 Transketolase, C-terminal domain BJD11_20510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD11_20510 PF00364 Biotin-requiring enzyme BJD11_20510 PF02817 e3 binding domain BJD11_20515 PF03421 YopJ Serine/Threonine acetyltransferase BJD11_20520 PF00270 DEAD/DEAH box helicase BJD11_20520 PF00271 Helicase conserved C-terminal domain BJD11_20540 PF00873 AcrB/AcrD/AcrF family BJD11_20555 PF02321 Outer membrane efflux protein BJD11_20560 PF06903 VirK protein BJD11_20580 PF13460 NAD(P)H-binding BJD11_20585 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD11_20585 PF00128 Alpha amylase, catalytic domain BJD11_20595 PF00128 Alpha amylase, catalytic domain BJD11_20600 PF02446 4-alpha-glucanotransferase BJD11_20605 PF00128 Alpha amylase, catalytic domain BJD11_20605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD11_20605 PF11941 Domain of unknown function (DUF3459) BJD11_20610 PF02806 Alpha amylase, C-terminal all-beta domain BJD11_20610 PF00128 Alpha amylase, catalytic domain BJD11_20610 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD11_20615 PF08323 Starch synthase catalytic domain BJD11_20615 PF00534 Glycosyl transferases group 1 BJD11_20620 PF00072 Response regulator receiver domain BJD11_20620 PF00990 Diguanylate cyclase, GGDEF domain BJD11_20625 PF05661 Protein of unknown function (DUF808) BJD11_20635 PF03109 ABC1 family BJD11_20645 PF00884 Sulfatase BJD11_20650 PF00924 Mechanosensitive ion channel BJD11_20650 PF12795 Mechanosensitive ion channel porin domain BJD11_20650 PF12794 Mechanosensitive ion channel inner membrane domain 1 BJD11_20665 PF01464 Transglycosylase SLT domain BJD11_20680 PF01527 Transposase BJD11_20700 PF01311 Bacterial export proteins, family 1 BJD11_20710 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD11_20710 PF18269 T3SS EscN ATPase C-terminal domain BJD11_20710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD11_20725 PF01514 Secretory protein of YscJ/FliF family BJD11_20740 PF01312 FlhB HrpN YscU SpaS Family BJD11_20745 PF00771 FHIPEP family BJD11_20760 PF00813 FliP family BJD11_20765 PF01313 Bacterial export proteins, family 3 BJD11_20815 PF05819 NolX protein BJD11_20845 PF01040 UbiA prenyltransferase family BJD11_20855 PF06968 Biotin and Thiamin Synthesis associated domain BJD11_20855 PF04055 Radical SAM superfamily BJD11_20860 PF00155 Aminotransferase class I and II BJD11_20870 PF12697 Alpha/beta hydrolase family BJD11_20875 PF00106 short chain dehydrogenase BJD11_20880 PF13649 Methyltransferase domain BJD11_20900 PF00291 Pyridoxal-phosphate dependent enzyme BJD11_20900 PF13291 ACT domain BJD11_20910 PF01134 Glucose inhibited division protein A BJD11_20910 PF13932 GidA associated domain BJD11_20915 PF10677 Protein of unknown function (DUF2490) BJD11_20920 PF07859 alpha/beta hydrolase fold BJD11_20930 PF01614 Bacterial transcriptional regulator BJD11_20930 PF09339 IclR helix-turn-helix domain BJD11_20945 PF02627 Carboxymuconolactone decarboxylase family BJD11_20950 PF12146 Serine aminopeptidase, S33 BJD11_20955 PF10397 Adenylosuccinate lyase C-terminus BJD11_20955 PF00206 Lyase BJD11_20965 PF00775 Dioxygenase BJD11_20965 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BJD11_20970 PF02803 Thiolase, C-terminal domain BJD11_20970 PF00108 Thiolase, N-terminal domain BJD11_20975 PF01144 Coenzyme A transferase BJD11_20980 PF01144 Coenzyme A transferase BJD11_20985 PF00355 Rieske [2Fe-2S] domain BJD11_20995 PF08220 DeoR-like helix-turn-helix domain BJD11_20995 PF00455 DeoR C terminal sensor domain BJD11_21000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BJD11_21000 PF01266 FAD dependent oxidoreductase BJD11_21005 PF00230 Major intrinsic protein BJD11_21010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD11_21010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD11_21020 PF01494 FAD binding domain BJD11_21030 PF00171 Aldehyde dehydrogenase family BJD11_21050 PF01966 HD domain BJD11_21050 PF11871 Domain of unknown function (DUF3391) BJD11_21055 PF07690 Major Facilitator Superfamily BJD11_21065 PF00132 Bacterial transferase hexapeptide (six repeats) BJD11_21085 PF00920 Dehydratase family BJD11_21090 PF00589 Phage integrase family BJD11_21090 PF13495 Phage integrase, N-terminal SAM-like domain BJD11_21105 PF13333 Integrase core domain BJD11_21105 PF13276 HTH-like domain BJD11_21105 PF00665 Integrase core domain BJD11_21130 PF01638 HxlR-like helix-turn-helix BJD11_21135 PF05368 NmrA-like family BJD11_21145 PF03812 2-keto-3-deoxygluconate permease BJD11_21155 PF08267 Cobalamin-independent synthase, N-terminal domain BJD11_21155 PF01717 Cobalamin-independent synthase, Catalytic domain BJD11_21165 PF03358 NADPH-dependent FMN reductase BJD11_21170 PF03466 LysR substrate binding domain BJD11_21170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_21175 PF02677 Epoxyqueuosine reductase QueH BJD11_21190 PF02321 Outer membrane efflux protein BJD11_21195 PF00873 AcrB/AcrD/AcrF family BJD11_21200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_21200 PF00529 HlyD membrane-fusion protein of T1SS BJD11_21205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_21205 PF00672 HAMP domain BJD11_21205 PF00512 His Kinase A (phospho-acceptor) domain BJD11_21210 PF00072 Response regulator receiver domain BJD11_21210 PF00486 Transcriptional regulatory protein, C terminal BJD11_21215 PF00551 Formyl transferase BJD11_21225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD11_21225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD11_21230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD11_21235 PF02146 Sir2 family BJD11_21240 PF08386 TAP-like protein BJD11_21240 PF00561 alpha/beta hydrolase fold BJD11_21250 PF07690 Major Facilitator Superfamily BJD11_21255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_21255 PF03466 LysR substrate binding domain BJD11_21270 PF01026 TatD related DNase BJD11_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_21275 PF03466 LysR substrate binding domain BJD11_21280 PF00355 Rieske [2Fe-2S] domain BJD11_21285 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD11_21295 PF00860 Permease family BJD11_21305 PF01156 Inosine-uridine preferring nucleoside hydrolase BJD11_21310 PF01425 Amidase BJD11_21330 PF00561 alpha/beta hydrolase fold BJD11_21335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_21335 PF03466 LysR substrate binding domain BJD11_21345 PF01546 Peptidase family M20/M25/M40 BJD11_21345 PF07687 Peptidase dimerisation domain BJD11_21350 PF00266 Aminotransferase class-V BJD11_21365 PF09349 OHCU decarboxylase BJD11_21365 PF01014 Uricase BJD11_21370 PF13454 FAD-NAD(P)-binding BJD11_21375 PF00576 HIUase/Transthyretin family BJD11_21380 PF07308 Protein of unknown function (DUF1456) BJD11_21390 PF04408 Helicase associated domain (HA2) BJD11_21390 PF00271 Helicase conserved C-terminal domain BJD11_21390 PF08482 ATP-dependent helicase C-terminal BJD11_21390 PF00270 DEAD/DEAH box helicase BJD11_21400 PF00849 RNA pseudouridylate synthase BJD11_21415 PF16884 N-terminal domain of oxidoreductase BJD11_21415 PF00107 Zinc-binding dehydrogenase BJD11_21435 PF02566 OsmC-like protein BJD11_21440 PF01047 MarR family BJD11_21445 PF03969 AFG1-like ATPase BJD11_21470 PF02492 CobW/HypB/UreG, nucleotide-binding domain BJD11_21470 PF07683 Cobalamin synthesis protein cobW C-terminal domain BJD11_21535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD11_21535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD11_21535 PF02770 Acyl-CoA dehydrogenase, middle domain BJD11_21540 PF01039 Carboxyl transferase domain BJD11_21545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD11_21545 PF02785 Biotin carboxylase C-terminal domain BJD11_21545 PF00364 Biotin-requiring enzyme BJD11_21545 PF00289 Biotin carboxylase, N-terminal domain BJD11_21550 PF00326 Prolyl oligopeptidase family BJD11_21570 PF00990 Diguanylate cyclase, GGDEF domain BJD11_21575 PF00463 Isocitrate lyase family BJD11_21580 PF01274 Malate synthase BJD11_21585 PF03466 LysR substrate binding domain BJD11_21585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_21590 PF00999 Sodium/hydrogen exchanger family BJD11_21595 PF12833 Helix-turn-helix domain BJD11_21615 PF12706 Beta-lactamase superfamily domain BJD11_21620 PF00106 short chain dehydrogenase BJD11_21625 PF01432 Peptidase family M3 BJD11_21630 PF01112 Asparaginase BJD11_21640 PF00472 RF-1 domain BJD11_21650 PF00849 RNA pseudouridylate synthase BJD11_21660 PF03109 ABC1 family BJD11_21675 PF07478 D-ala D-ala ligase C-terminus BJD11_21675 PF01820 D-ala D-ala ligase N-terminus BJD11_21685 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BJD11_21690 PF00501 AMP-binding enzyme BJD11_21695 PF03692 Putative zinc- or iron-chelating domain BJD11_21700 PF00561 alpha/beta hydrolase fold BJD11_21705 PF02661 Fic/DOC family BJD11_21705 PF13784 Fic/DOC family N-terminal BJD11_21710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD11_21710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD11_21725 PF00588 SpoU rRNA Methylase family BJD11_21730 PF07690 Major Facilitator Superfamily BJD11_21745 PF00158 Sigma-54 interaction domain BJD11_21745 PF00072 Response regulator receiver domain BJD11_21745 PF02954 Bacterial regulatory protein, Fis family BJD11_21750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_21750 PF00512 His Kinase A (phospho-acceptor) domain BJD11_21755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD11_21755 PF00205 Thiamine pyrophosphate enzyme, central domain BJD11_21755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD11_21800 PF01527 Transposase BJD11_21805 PF01527 Transposase BJD11_21810 PF13683 Integrase core domain BJD11_21810 PF13276 HTH-like domain BJD11_21895 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BJD11_21895 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BJD11_21900 PF02556 Preprotein translocase subunit SecB BJD11_21905 PF00581 Rhodanese-like domain BJD11_21940 PF00108 Thiolase, N-terminal domain BJD11_21940 PF02803 Thiolase, C-terminal domain BJD11_21950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD11_21955 PF00080 Copper/zinc superoxide dismutase (SODC) BJD11_21960 PF00080 Copper/zinc superoxide dismutase (SODC) BJD11_21965 PF00158 Sigma-54 interaction domain BJD11_21965 PF00072 Response regulator receiver domain BJD11_21965 PF02954 Bacterial regulatory protein, Fis family BJD11_21970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_21970 PF00512 His Kinase A (phospho-acceptor) domain BJD11_21970 PF00989 PAS fold BJD11_21975 PF00909 Ammonium Transporter Family BJD11_21980 PF00543 Nitrogen regulatory protein P-II BJD11_21985 PF00120 Glutamine synthetase, catalytic domain BJD11_21985 PF03951 Glutamine synthetase, beta-Grasp domain BJD11_21995 PF02673 Bacitracin resistance protein BacA BJD11_22005 PF00107 Zinc-binding dehydrogenase BJD11_22005 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_22035 PF03061 Thioesterase superfamily BJD11_22040 PF13091 PLD-like domain BJD11_22055 PF10609 NUBPL iron-transfer P-loop NTPase BJD11_22055 PF01883 Iron-sulfur cluster assembly protein BJD11_22090 PF12867 DinB superfamily BJD11_22090 PF03781 Sulfatase-modifying factor enzyme 1 BJD11_22100 PF00528 Binding-protein-dependent transport system inner membrane component BJD11_22105 PF00005 ABC transporter BJD11_22120 PF00005 ABC transporter BJD11_22130 PF01546 Peptidase family M20/M25/M40 BJD11_22130 PF07687 Peptidase dimerisation domain BJD11_22140 PF07660 Secretin and TonB N terminus short domain BJD11_22140 PF00593 TonB dependent receptor BJD11_22140 PF07715 TonB-dependent Receptor Plug Domain BJD11_22145 PF01037 Lrp/AsnC ligand binding domain BJD11_22150 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BJD11_22160 PF00657 GDSL-like Lipase/Acylhydrolase BJD11_22175 PF04962 KduI/IolB family BJD11_22180 PF00356 Bacterial regulatory proteins, lacI family BJD11_22185 PF04616 Glycosyl hydrolases family 43 BJD11_22185 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD11_22190 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BJD11_22200 PF03480 Bacterial extracellular solute-binding protein, family 7 BJD11_22210 PF13472 GDSL-like Lipase/Acylhydrolase family BJD11_22210 PF07859 alpha/beta hydrolase fold BJD11_22215 PF00135 Carboxylesterase family BJD11_22220 PF00248 Aldo/keto reductase family BJD11_22230 PF00128 Alpha amylase, catalytic domain BJD11_22230 PF02806 Alpha amylase, C-terminal all-beta domain BJD11_22230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD11_22235 PF16657 Maltogenic Amylase, C-terminal domain BJD11_22235 PF00128 Alpha amylase, catalytic domain BJD11_22240 PF11896 Domain of unknown function (DUF3416) BJD11_22240 PF00128 Alpha amylase, catalytic domain BJD11_22300 PF00294 pfkB family carbohydrate kinase BJD11_22310 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BJD11_22310 PF12241 Trans-2-enoyl-CoA reductase catalytic region BJD11_22310 PF07055 Enoyl reductase FAD binding domain BJD11_22315 PF00486 Transcriptional regulatory protein, C terminal BJD11_22315 PF18500 CadC C-terminal domain 1 BJD11_22335 PF00196 Bacterial regulatory proteins, luxR family BJD11_22335 PF00072 Response regulator receiver domain BJD11_22340 PF07730 Histidine kinase BJD11_22345 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BJD11_22360 PF01070 FMN-dependent dehydrogenase BJD11_22365 PF02735 Ku70/Ku80 beta-barrel domain BJD11_22385 PF00171 Aldehyde dehydrogenase family BJD11_22400 PF00593 TonB dependent receptor BJD11_22400 PF07715 TonB-dependent Receptor Plug Domain BJD11_22405 PF00155 Aminotransferase class I and II BJD11_22425 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BJD11_22475 PF17863 AAA lid domain BJD11_22475 PF07726 ATPase family associated with various cellular activities (AAA) BJD11_22515 PF00083 Sugar (and other) transporter BJD11_22515 PF08946 Osmosensory transporter coiled coil BJD11_22525 PF00085 Thioredoxin BJD11_22540 PF00293 NUDIX domain BJD11_22540 PF13344 Haloacid dehalogenase-like hydrolase BJD11_22550 PF16485 Protealysin propeptide BJD11_22550 PF02868 Thermolysin metallopeptidase, alpha-helical domain BJD11_22550 PF01447 Thermolysin metallopeptidase, catalytic domain BJD11_22575 PF05532 CsbD-like BJD11_22600 PF13276 HTH-like domain BJD11_22600 PF13683 Integrase core domain BJD11_22605 PF01527 Transposase BJD11_22615 PF00069 Protein kinase domain BJD11_22615 PF03793 PASTA domain BJD11_22640 PF00106 short chain dehydrogenase BJD11_22660 PF03006 Haemolysin-III related BJD11_22665 PF00270 DEAD/DEAH box helicase BJD11_22665 PF09369 Domain of unknown function (DUF1998) BJD11_22665 PF00271 Helicase conserved C-terminal domain BJD11_22730 PF03466 LysR substrate binding domain BJD11_22730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_22760 PF04898 Glutamate synthase central domain BJD11_22760 PF01645 Conserved region in glutamate synthase BJD11_22760 PF01493 GXGXG motif BJD11_22760 PF00310 Glutamine amidotransferases class-II BJD11_22765 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD11_22765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BJD11_22775 PF00107 Zinc-binding dehydrogenase BJD11_22775 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_22785 PF00150 Cellulase (glycosyl hydrolase family 5) BJD11_22795 PF00150 Cellulase (glycosyl hydrolase family 5) BJD11_22800 PF00150 Cellulase (glycosyl hydrolase family 5) BJD11_22810 PF04389 Peptidase family M28 BJD11_22820 PF01551 Peptidase family M23 BJD11_22825 PF13180 PDZ domain BJD11_22825 PF03572 Peptidase family S41 BJD11_22830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD11_22830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD11_22845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BJD11_22855 PF04055 Radical SAM superfamily BJD11_22870 PF13396 Phospholipase_D-nuclease N-terminal BJD11_22870 PF13091 PLD-like domain BJD11_22880 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BJD11_22890 PF02472 Biopolymer transport protein ExbD/TolR BJD11_22895 PF02472 Biopolymer transport protein ExbD/TolR BJD11_22900 PF02472 Biopolymer transport protein ExbD/TolR BJD11_22905 PF01618 MotA/TolQ/ExbB proton channel family BJD11_22910 PF03544 Gram-negative bacterial TonB protein C-terminal BJD11_22920 PF01435 Peptidase family M48 BJD11_22930 PF01751 Toprim domain BJD11_22930 PF00204 DNA gyrase B BJD11_22930 PF00986 DNA gyrase B subunit, carboxyl terminus BJD11_22930 PF18053 DNA gyrase B subunit insert domain BJD11_22930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_22935 PF02463 RecF/RecN/SMC N terminal domain BJD11_22940 PF02768 DNA polymerase III beta subunit, C-terminal domain BJD11_22940 PF02767 DNA polymerase III beta subunit, central domain BJD11_22940 PF00712 DNA polymerase III beta subunit, N-terminal domain BJD11_22945 PF00308 Bacterial dnaA protein BJD11_22945 PF11638 DnaA N-terminal domain BJD11_22945 PF08299 Bacterial dnaA protein helix-turn-helix BJD11_22955 PF00468 Ribosomal protein L34 BJD11_22960 PF00825 Ribonuclease P BJD11_22965 PF14849 YidC periplasmic domain BJD11_22965 PF02096 60Kd inner membrane protein BJD11_22970 PF01522 Polysaccharide deacetylase BJD11_22975 PF10396 GTP-binding protein TrmE N-terminus BJD11_22975 PF12631 MnmE helical domain BJD11_22975 PF01926 50S ribosome-binding GTPase BJD11_22980 PF01569 PAP2 superfamily BJD11_22995 PF03009 Glycerophosphoryl diester phosphodiesterase family BJD11_23000 PF01694 Rhomboid family BJD11_23010 PF03741 Integral membrane protein TerC family BJD11_23015 PF10672 S-adenosylmethionine-dependent methyltransferase BJD11_23015 PF17785 PUA-like domain BJD11_23030 PF07690 Major Facilitator Superfamily BJD11_23035 PF02595 Glycerate kinase family BJD11_23040 PF13556 PucR C-terminal helix-turn-helix domain BJD11_23040 PF17853 GGDEF-like domain BJD11_23040 PF05651 Putative sugar diacid recognition BJD11_23045 PF00990 Diguanylate cyclase, GGDEF domain BJD11_23050 PF10947 Protein of unknown function (DUF2628) BJD11_23055 PF07715 TonB-dependent Receptor Plug Domain BJD11_23055 PF00593 TonB dependent receptor BJD11_23060 PF07971 Glycosyl hydrolase family 92 BJD11_23060 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD11_23065 PF13520 Amino acid permease BJD11_23090 PF03466 LysR substrate binding domain BJD11_23090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_23095 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_23095 PF00107 Zinc-binding dehydrogenase BJD11_23100 PF02646 RmuC family BJD11_23110 PF00255 Glutathione peroxidase BJD11_23120 PF04333 MlaA lipoprotein BJD11_23130 PF05494 MlaC protein BJD11_23135 PF02470 MlaD protein BJD11_23140 PF02405 Permease MlaE BJD11_23145 PF00005 ABC transporter BJD11_23180 PF17946 RecC C-terminal domain BJD11_23190 PF13538 UvrD-like helicase C-terminal domain BJD11_23200 PF01381 Helix-turn-helix BJD11_23250 PF00440 Bacterial regulatory proteins, tetR family BJD11_23285 PF01527 Transposase BJD11_23290 PF13683 Integrase core domain BJD11_23290 PF13276 HTH-like domain BJD11_23330 PF13396 Phospholipase_D-nuclease N-terminal BJD11_23330 PF13091 PLD-like domain BJD11_23350 PF00083 Sugar (and other) transporter BJD11_23355 PF04632 Fusaric acid resistance protein family BJD11_23360 PF02321 Outer membrane efflux protein BJD11_23365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD11_23365 PF00529 HlyD membrane-fusion protein of T1SS BJD11_23370 PF07869 Protein of unknown function (DUF1656) BJD11_23380 PF01227 GTP cyclohydrolase I BJD11_23400 PF01925 Sulfite exporter TauE/SafE BJD11_23405 PF02810 SEC-C motif BJD11_23415 PF01263 Aldose 1-epimerase BJD11_23420 PF07690 Major Facilitator Superfamily BJD11_23425 PF01126 Heme oxygenase BJD11_23430 PF08446 PAS fold BJD11_23430 PF13426 PAS domain BJD11_23430 PF01590 GAF domain BJD11_23430 PF00360 Phytochrome region BJD11_23435 PF03594 Benzoate membrane transport protein BJD11_23465 PF06827 Zinc finger found in FPG and IleRS BJD11_23465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD11_23465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD11_23475 PF04349 Periplasmic glucan biosynthesis protein, MdoG BJD11_23480 PF00360 Phytochrome region BJD11_23480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_23480 PF01590 GAF domain BJD11_23480 PF00512 His Kinase A (phospho-acceptor) domain BJD11_23480 PF08446 PAS fold BJD11_23485 PF00265 Thymidine kinase BJD11_23490 PF13361 UvrD-like helicase C-terminal domain BJD11_23490 PF00580 UvrD/REP helicase N-terminal domain BJD11_23505 PF04337 Protein of unknown function, DUF480 BJD11_23515 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BJD11_23520 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BJD11_23525 PF04820 Tryptophan halogenase BJD11_23545 PF00356 Bacterial regulatory proteins, lacI family BJD11_23555 PF01553 Acyltransferase BJD11_23565 PF00550 Phosphopantetheine attachment site BJD11_23565 PF16197 Ketoacyl-synthetase C-terminal extension BJD11_23565 PF08240 Alcohol dehydrogenase GroES-like domain BJD11_23565 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD11_23565 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD11_23565 PF00107 Zinc-binding dehydrogenase BJD11_23565 PF00698 Acyl transferase domain BJD11_23565 PF08659 KR domain BJD11_23565 PF14765 Polyketide synthase dehydratase BJD11_23595 PF04616 Glycosyl hydrolases family 43 BJD11_23615 PF00331 Glycosyl hydrolase family 10 BJD11_23615 PF03422 Carbohydrate binding module (family 6) BJD11_23615 PF00553 Cellulose binding domain BJD11_23625 PF00553 Cellulose binding domain BJD11_23625 PF03422 Carbohydrate binding module (family 6) BJD11_23625 PF00331 Glycosyl hydrolase family 10 BJD11_23630 PF02614 Glucuronate isomerase BJD11_23635 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BJD11_23635 PF16355 Domain of unknown function (DUF4982) BJD11_23635 PF00703 Glycosyl hydrolases family 2 BJD11_23635 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD11_23635 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD11_23640 PF00331 Glycosyl hydrolase family 10 BJD11_23645 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD11_23660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD11_23660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD11_23670 PF00202 Aminotransferase class-III BJD11_23685 PF00171 Aldehyde dehydrogenase family BJD11_23720 PF08125 Mannitol dehydrogenase C-terminal domain BJD11_23720 PF01232 Mannitol dehydrogenase Rossmann domain BJD11_23725 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD11_23725 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD11_23725 PF14310 Fibronectin type III-like domain BJD11_23725 PF07691 PA14 domain BJD11_23730 PF04616 Glycosyl hydrolases family 43 BJD11_23730 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD11_23735 PF13378 Enolase C-terminal domain-like BJD11_23735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD11_23745 PF07477 Glycosyl hydrolase family 67 C-terminus BJD11_23745 PF07488 Glycosyl hydrolase family 67 middle domain BJD11_23745 PF03648 Glycosyl hydrolase family 67 N-terminus BJD11_23750 PF00356 Bacterial regulatory proteins, lacI family BJD11_23760 PF01171 PP-loop family BJD11_23765 PF04381 Putative exonuclease, RdgC BJD11_23780 PF12697 Alpha/beta hydrolase family BJD11_23785 PF00762 Ferrochelatase BJD11_23795 PF02416 mttA/Hcf106 family BJD11_23800 PF02416 mttA/Hcf106 family BJD11_23805 PF00902 Sec-independent protein translocase protein (TatC) BJD11_23815 PF00117 Glutamine amidotransferase class-I BJD11_23815 PF00958 GMP synthase C terminal domain BJD11_23830 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD11_23830 PF00437 Type II/IV secretion system protein BJD11_23835 PF02091 Glycyl-tRNA synthetase alpha subunit BJD11_23840 PF05746 DALR anticodon binding domain BJD11_23840 PF02092 Glycyl-tRNA synthetase beta subunit BJD11_23845 PF13181 Tetratricopeptide repeat BJD11_23860 PF17243 POTRA domain TamA domain 1 BJD11_23860 PF01103 Surface antigen BJD11_23865 PF04357 TamB, inner membrane protein subunit of TAM complex BJD11_23900 PF06165 Glycosyltransferase family 36 BJD11_23900 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BJD11_23915 PF00512 His Kinase A (phospho-acceptor) domain BJD11_23915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_23920 PF02659 Putative manganese efflux pump BJD11_23930 PF09339 IclR helix-turn-helix domain BJD11_23930 PF01614 Bacterial transcriptional regulator BJD11_23935 PF07690 Major Facilitator Superfamily BJD11_23940 PF05336 L-rhamnose mutarotase BJD11_23945 PF13378 Enolase C-terminal domain-like BJD11_23945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD11_23955 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD11_23970 PF00248 Aldo/keto reductase family BJD11_23980 PF04616 Glycosyl hydrolases family 43 BJD11_23980 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD11_24010 PF00196 Bacterial regulatory proteins, luxR family BJD11_24010 PF00072 Response regulator receiver domain BJD11_24015 PF16177 Acetyl-coenzyme A synthetase N-terminus BJD11_24015 PF13193 AMP-binding enzyme C-terminal domain BJD11_24015 PF00501 AMP-binding enzyme BJD11_24025 PF04341 Protein of unknown function, DUF485 BJD11_24030 PF00474 Sodium:solute symporter family BJD11_24040 PF03372 Endonuclease/Exonuclease/phosphatase family BJD11_24050 PF04226 Transglycosylase associated protein BJD11_24060 PF01648 4'-phosphopantetheinyl transferase superfamily BJD11_24065 PF16655 PhoD-like phosphatase, N-terminal domain BJD11_24065 PF09423 PhoD-like phosphatase BJD11_24070 PF09423 PhoD-like phosphatase BJD11_24070 PF16655 PhoD-like phosphatase, N-terminal domain BJD11_24075 PF02527 rRNA small subunit methyltransferase G BJD11_24095 PF13533 Biotin-lipoyl like BJD11_24100 PF00873 AcrB/AcrD/AcrF family BJD11_24110 PF00830 Ribosomal L28 family BJD11_24115 PF00471 Ribosomal protein L33 BJD11_24120 PF04909 Amidohydrolase BJD11_24130 PF04303 PrpF protein BJD11_24135 PF03737 Aldolase/RraA BJD11_24140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_24140 PF03466 LysR substrate binding domain BJD11_24145 PF13396 Phospholipase_D-nuclease N-terminal BJD11_24145 PF13091 PLD-like domain BJD11_24160 PF13361 UvrD-like helicase C-terminal domain BJD11_24160 PF00580 UvrD/REP helicase N-terminal domain BJD11_24170 PF12464 Maltose acetyltransferase BJD11_24170 PF14602 Hexapeptide repeat of succinyl-transferase BJD11_24195 PF05638 Type VI secretion system effector, Hcp BJD11_24225 PF17871 AAA lid domain BJD11_24225 PF10431 C-terminal, D2-small domain, of ClpB protein BJD11_24225 PF00004 ATPase family associated with various cellular activities (AAA) BJD11_24225 PF07724 AAA domain (Cdc48 subfamily) BJD11_24270 PF00328 Histidine phosphatase superfamily (branch 2) BJD11_24290 PF08281 Sigma-70, region 4 BJD11_24290 PF04542 Sigma-70 region 2 BJD11_24300 PF03793 PASTA domain BJD11_24300 PF00069 Protein kinase domain BJD11_24315 PF04717 Type VI secretion system, phage-baseplate injector BJD11_24315 PF16671 Actin cross-linking domain BJD11_24330 PF03466 LysR substrate binding domain BJD11_24330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD11_24335 PF00248 Aldo/keto reductase family BJD11_24365 PF00069 Protein kinase domain BJD11_24395 PF01612 3'-5' exonuclease BJD11_24395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD11_24395 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD11_24395 PF00476 DNA polymerase family A BJD11_24405 PF01218 Coproporphyrinogen III oxidase BJD11_24445 PF04820 Tryptophan halogenase BJD11_24450 PF00550 Phosphopantetheine attachment site BJD11_24460 PF01553 Acyltransferase BJD11_24465 PF07977 FabA-like domain BJD11_24525 PF00535 Glycosyl transferase family 2 BJD11_24535 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD11_24535 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD11_24540 PF05166 YcgL domain BJD11_24550 PF00723 Glycosyl hydrolases family 15 BJD11_24555 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD11_24555 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD11_24560 PF13683 Integrase core domain BJD11_24560 PF13276 HTH-like domain BJD11_24565 PF01527 Transposase BJD11_24580 PF02254 TrkA-N domain BJD11_24580 PF00999 Sodium/hydrogen exchanger family BJD11_24590 PF00194 Eukaryotic-type carbonic anhydrase BJD11_24595 PF03448 MgtE intracellular N domain BJD11_24595 PF00571 CBS domain BJD11_24595 PF01769 Divalent cation transporter BJD11_24600 PF13607 Succinyl-CoA ligase like flavodoxin domain BJD11_24600 PF13380 CoA binding domain BJD11_24600 PF00583 Acetyltransferase (GNAT) family BJD11_24615 PF00317 Ribonucleotide reductase, all-alpha domain BJD11_24615 PF02867 Ribonucleotide reductase, barrel domain BJD11_24615 PF03477 ATP cone domain BJD11_24620 PF00268 Ribonucleotide reductase, small chain BJD11_24625 PF00258 Flavodoxin BJD11_24650 PF02558 Ketopantoate reductase PanE/ApbA BJD11_24650 PF08546 Ketopantoate reductase PanE/ApbA C terminal BJD11_24655 PF01061 ABC-2 type transporter BJD11_24660 PF00005 ABC transporter BJD11_24665 PF00175 Oxidoreductase NAD-binding domain BJD11_24665 PF01383 CpcD/allophycocyanin linker domain BJD11_24670 PF01545 Cation efflux family BJD11_24675 PF02583 Metal-sensitive transcriptional repressor BJD11_24690 PF01381 Helix-turn-helix BJD11_24700 PF00005 ABC transporter BJD11_24715 PF04820 Tryptophan halogenase BJD11_24735 PF02798 Glutathione S-transferase, N-terminal domain BJD11_24735 PF00043 Glutathione S-transferase, C-terminal domain BJD11_24740 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD11_24740 PF00326 Prolyl oligopeptidase family BJD11_24765 PF00490 Delta-aminolevulinic acid dehydratase BJD11_24775 PF00667 FAD binding domain BJD11_24775 PF00258 Flavodoxin BJD11_24775 PF00175 Oxidoreductase NAD-binding domain BJD11_24785 PF08501 Shikimate dehydrogenase substrate binding domain BJD11_24785 PF01488 Shikimate / quinate 5-dehydrogenase BJD11_24785 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BJD11_24800 PF06733 DEAD_2 BJD11_24800 PF13307 Helicase C-terminal domain BJD11_24810 PF00199 Catalase BJD11_24810 PF06628 Catalase-related immune-responsive BJD11_24835 PF01207 Dihydrouridine synthase (Dus) BJD11_24845 PF00486 Transcriptional regulatory protein, C terminal BJD11_24845 PF00072 Response regulator receiver domain BJD11_24850 PF00512 His Kinase A (phospho-acceptor) domain BJD11_24850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD11_24850 PF00672 HAMP domain BJD11_24865 PF06167 Glucose-regulated metallo-peptidase M90 BJD11_24880 PF08279 HTH domain BJD11_24880 PF02237 Biotin protein ligase C terminal domain BJD11_24880 PF03099 Biotin/lipoate A/B protein ligase family BJD11_24885 PF03309 Type III pantothenate kinase BJD11_24900 PF02223 Thymidylate kinase BJD11_24930 PF00491 Arginase family BJD11_24945 PF05532 CsbD-like BJD11_24950 PF00579 tRNA synthetases class I (W and Y) BJD11_24955 PF00753 Metallo-beta-lactamase superfamily BJD11_24970 PF00892 EamA-like transporter family BJD11_24975 PF00892 EamA-like transporter family BJD11_24995 PF00005 ABC transporter BJD11_25000 PF13533 Biotin-lipoyl like BJD11_25005 PF07730 Histidine kinase BJD11_25010 PF00196 Bacterial regulatory proteins, luxR family BJD11_25010 PF00072 Response regulator receiver domain BJD11_25025 PF00199 Catalase BJD11_25030 PF04542 Sigma-70 region 2 BJD11_25030 PF08281 Sigma-70, region 4 BJD11_25040 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD11_25040 PF00883 Cytosol aminopeptidase family, catalytic domain BJD11_25045 PF13419 Haloacid dehalogenase-like hydrolase BJD11_25050 PF01594 AI-2E family transporter BJD11_25070 PF00595 PDZ domain