locus-tag	class	description
BJD11_00040	COG2963	transposase activity
BJD11_00070	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD11_00075	COG0776	regulation of translation
BJD11_00105	COG2974	May be involved in recombination
BJD11_00115	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD11_00190	COG2200	EAL domain
BJD11_00190	COG3287	FIST C domain
BJD11_00190	COG2199	diguanylate cyclase activity
BJD11_00195	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD11_00305	COG1192	Involved in chromosome partitioning
BJD11_00310	COG1475	DNA binding
BJD11_00380	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD11_00425	COG3039	Transposase
BJD11_00430	COG2801	Transposase and inactivated derivatives
BJD11_00435	COG2963	transposase activity
BJD11_00455	COG2963	transposase activity
BJD11_00525	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD11_00525	COG1754	DNA topoisomerase type I activity
BJD11_00595	COG0305	Participates in initiation and elongation during chromosome replication
BJD11_00655	COG2963	transposase activity
BJD11_00740	COG0653	protein targeting
BJD11_00755	COG0464	growth
BJD11_00780	COG0210	DNA helicase
BJD11_00850	COG2963	transposase activity
BJD11_00895	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD11_00895	COG0551	DNA topoisomerase type I activity
BJD11_00940	COG0542	response to heat
BJD11_00975	COG2963	transposase activity
BJD11_01010	COG4456	Virulence-associated protein
BJD11_01015	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD11_01025	COG5599	Phosphatase
BJD11_01045	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD11_01065	COG3318	Belongs to the UPF0149 family
BJD11_01065	COG3012	SEC-C Motif Domain Protein
BJD11_01095	COG2072	flavoprotein involved in K transport
BJD11_01115	COG0431	NADPH-dependent FMN reductase
BJD11_01130	COG0798	PFAM Bile acid sodium symporter
BJD11_01135	COG0492	ferredoxin-NADP+ reductase activity
BJD11_01150	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD11_01155	COG0573	inorganic phosphate transmembrane transporter activity
BJD11_01170	COG0704	Plays a role in the regulation of phosphate uptake
BJD11_01230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_01235	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD11_01250	COG0010	Belongs to the arginase family
BJD11_01305	COG2132	Multicopper oxidase
BJD11_01330	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD11_01370	COG0672	)-iron permease
BJD11_01385	COG4644	lycopene metabolic process
BJD11_01460	COG2963	transposase activity
BJD11_01480	COG2801	Transposase and inactivated derivatives
BJD11_01505	COG1061	Type III restriction enzyme res subunit
BJD11_01510	COG2963	transposase activity
BJD11_01620	COG2801	Transposase and inactivated derivatives
BJD11_01625	COG2963	transposase activity
BJD11_01640	COG1192	Involved in chromosome partitioning
BJD11_01670	COG2916	Histone family protein nucleoid-structuring protein H-NS
BJD11_01725	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD11_01775	COG0358	DNA primase activity
BJD11_01825	COG2337	Toxic component of a toxin-antitoxin (TA) module
BJD11_01865	COG3328	transposase activity
BJD11_01945	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD11_01965	COG2948	multi-organism process
BJD11_01970	COG3504	Conjugal transfer protein
BJD11_01980	COG3704	protein secretion by the type IV secretion system
BJD11_02055	COG2963	transposase activity
BJD11_02140	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD11_02175	COG3846	protein secretion by the type IV secretion system
BJD11_02185	COG3451	type IV secretory pathway VirB4
BJD11_02200	COG4962	Type ii secretion system protein e
BJD11_02270	COG0642	Histidine kinase
BJD11_02275	COG0745	RESPONSE REGULATOR receiver
BJD11_02280	COG1090	epimerase
BJD11_02320	COG1690	Belongs to the RtcB family
BJD11_02360	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BJD11_02375	COG0606	chelatase, subunit chli
BJD11_02395	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BJD11_02395	COG3291	Pkd domain containing protein
BJD11_02420	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BJD11_02425	COG1166	arginine decarboxylase activity
BJD11_02450	COG4221	oxidoreductase activity
BJD11_02465	COG0018	arginyl-trna synthetase
BJD11_02470	COG2003	Belongs to the UPF0758 family
BJD11_02475	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BJD11_02480	COG0756	dUTP diphosphatase activity
BJD11_02500	COG0463	Glycosyl transferase, family 2
BJD11_02520	COG1475	DNA binding
BJD11_02525	COG1192	Involved in chromosome partitioning
BJD11_02535	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BJD11_02540	COG0708	Exodeoxyribonuclease III
BJD11_02545	COG2223	nitrite transmembrane transporter activity
BJD11_02555	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD11_02560	COG0739	heme binding
BJD11_02565	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD11_02605	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD11_02615	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD11_02645	COG0109	protoheme IX farnesyltransferase activity
BJD11_02660	COG0358	DNA primase activity
BJD11_02665	COG1295	ribonuclease BN
BJD11_02675	COG1610	YqeY-like protein
BJD11_02680	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BJD11_02685	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD11_02690	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD11_02700	COG2133	pyrroloquinoline quinone binding
BJD11_02705	COG4682	membrane
BJD11_02720	COG0531	amino acid
BJD11_02730	COG4948	Mandelate Racemase Muconate Lactonizing
BJD11_02740	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD11_02745	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BJD11_02790	COG5383	Protein conserved in bacteria
BJD11_02800	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD11_02805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_02810	COG1473	amidohydrolase
BJD11_02815	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD11_02815	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD11_02820	COG1652	LysM domain
BJD11_02840	COG0583	DNA-binding transcription factor activity
BJD11_02845	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BJD11_02855	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD11_02860	COG3118	belongs to the thioredoxin family
BJD11_02865	COG0513	Belongs to the DEAD box helicase family
BJD11_02870	COG2884	Cell division ATP-binding protein ftsE
BJD11_02875	COG2177	Part of the ABC transporter FtsEX involved in
BJD11_02880	COG2201	protein-glutamate methylesterase activity
BJD11_02885	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BJD11_02890	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD11_02895	COG2860	membrane
BJD11_02900	COG1252	NADH dehydrogenase
BJD11_02920	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD11_02940	COG0534	Mate efflux family protein
BJD11_02945	COG0616	signal peptide processing
BJD11_02960	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_02975	COG0009	L-threonylcarbamoyladenylate synthase
BJD11_02980	COG1754	DNA topoisomerase type I activity
BJD11_02980	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD11_02995	COG2922	Belongs to the Smg family
BJD11_03000	COG0758	DNA mediated transformation
BJD11_03005	COG1652	LysM domain
BJD11_03010	COG0242	peptide deformylase activity
BJD11_03015	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD11_03020	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD11_03020	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD11_03070	COG1560	Kdo2-lipid A biosynthetic process
BJD11_03075	COG1490	D-aminoacyl-tRNA deacylase activity
BJD11_03080	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD11_03150	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_03165	COG0024	Methionine aminopeptidase
BJD11_03175	COG0038	chloride channel
BJD11_03180	COG0659	secondary active sulfate transmembrane transporter activity
BJD11_03210	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD11_03215	COG0583	DNA-binding transcription factor activity
BJD11_03235	COG0251	oxidation-reduction process
BJD11_03310	COG1063	alcohol dehydrogenase
BJD11_03325	COG1132	(ABC) transporter
BJD11_03345	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD11_03350	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_03365	COG1294	oxidase, subunit
BJD11_03370	COG1271	oxidase subunit
BJD11_03415	COG3546	catalase activity
BJD11_03420	COG3685	Protein conserved in bacteria
BJD11_03440	COG2972	Histidine kinase
BJD11_03455	COG0531	amino acid
BJD11_03470	COG3590	peptidase
BJD11_03495	COG0583	DNA-binding transcription factor activity
BJD11_03500	COG3384	dioxygenase
BJD11_03510	COG1573	uracil-dna glycosylase
BJD11_03515	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BJD11_03525	COG0025	NhaP-type Na H and K H
BJD11_03530	COG1131	(ABC) transporter
BJD11_03535	COG0842	Transport permease protein
BJD11_03585	COG1522	sequence-specific DNA binding
BJD11_03590	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD11_03595	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD11_03615	COG2205	protein histidine kinase activity
BJD11_03615	COG2202	Pas domain
BJD11_03640	COG2813	Specifically methylates the guanine in position
BJD11_03645	COG1187	pseudouridine synthase activity
BJD11_03650	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD11_03680	COG5002	protein histidine kinase activity
BJD11_03680	COG0784	Response regulator, receiver
BJD11_03680	COG2198	Histidine kinase
BJD11_03690	COG1666	GTP binding
BJD11_03695	COG0697	spore germination
BJD11_03700	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD11_03705	COG2011	ABC-type metal ion transport system permease component
BJD11_03770	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD11_03780	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD11_03800	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD11_03810	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD11_03815	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD11_03820	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BJD11_03825	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD11_03830	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BJD11_03835	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD11_03850	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BJD11_03855	COG4191	Histidine kinase
BJD11_03860	COG2204	response regulator
BJD11_03875	COG0577	efflux transmembrane transporter activity
BJD11_03880	COG1136	(ABC) transporter
BJD11_03885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_03890	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD11_03940	COG0339	signal peptide processing
BJD11_03955	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD11_03965	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD11_03980	COG1956	GAF domain-containing protein
BJD11_03985	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BJD11_03995	COG0720	synthase
BJD11_04000	COG0513	Belongs to the DEAD box helicase family
BJD11_04015	COG0625	glutathione transferase activity
BJD11_04045	COG0626	cystathionine gamma-synthase activity
BJD11_04075	COG0438	transferase activity, transferring glycosyl groups
BJD11_04080	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
BJD11_04105	COG0463	Glycosyl transferase, family 2
BJD11_04120	COG2086	electron transfer activity
BJD11_04150	COG0662	Cupin 2, conserved barrel domain protein
BJD11_04150	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BJD11_04155	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD11_04160	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD11_04190	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD11_04190	COG3218	ABC-type transport auxiliary lipoprotein component
BJD11_04195	COG1127	ABC transporter
BJD11_04200	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD11_04215	COG0442	prolyl-tRNA aminoacylation
BJD11_04225	COG1183	phosphatidylcholine synthase activity
BJD11_04260	COG0525	valine-tRNA ligase activity
BJD11_04275	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD11_04285	COG0795	lipopolysaccharide-transporting ATPase activity
BJD11_04300	COG4974	Belongs to the 'phage' integrase family
BJD11_04310	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD11_04325	COG5295	Hep Hag repeat protein
BJD11_04330	COG1404	Belongs to the peptidase S8 family
BJD11_04335	COG5295	Hep Hag repeat protein
BJD11_04340	COG1404	Belongs to the peptidase S8 family
BJD11_04345	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD11_04355	COG1459	type II secretion system
BJD11_04360	COG2165	general secretion pathway protein
BJD11_04365	COG4970	Tfp pilus assembly protein FimT
BJD11_04370	COG2165	general secretion pathway protein
BJD11_04375	COG4795	General secretion pathway protein
BJD11_04380	COG3156	type II secretion system protein K
BJD11_04385	COG3166	PFAM Fimbrial assembly family protein
BJD11_04400	COG1450	Type ii and iii secretion system protein
BJD11_04460	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BJD11_04480	COG1215	transferase activity, transferring glycosyl groups
BJD11_04485	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BJD11_04490	COG0457	Tetratricopeptide repeat
BJD11_04515	COG0242	peptide deformylase activity
BJD11_04520	COG1307	EDD domain protein, DegV family
BJD11_04545	COG0402	S-adenosylhomocysteine deaminase activity
BJD11_04550	COG3964	amidohydrolase
BJD11_04565	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD11_04570	COG0726	polysaccharide deacetylase
BJD11_04590	COG1162	GTPase activity
BJD11_04615	COG2211	Major facilitator Superfamily
BJD11_04620	COG1609	Transcriptional regulator
BJD11_04625	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_04630	COG2851	Citrate transporter
BJD11_04650	COG0642	Histidine kinase
BJD11_04655	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD11_04660	COG2197	response regulator
BJD11_04675	COG0667	Aldo Keto reductase
BJD11_04685	COG0583	DNA-binding transcription factor activity
BJD11_04715	COG1301	dicarboxylic acid transport
BJD11_04720	COG0280	phosphate acetyltransferase
BJD11_04720	COG0281	malic enzyme
BJD11_04745	COG1560	Kdo2-lipid A biosynthetic process
BJD11_04755	COG1519	Transferase
BJD11_04760	COG1538	Outer membrane efflux protein
BJD11_04765	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD11_04785	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BJD11_04790	COG0066	3-isopropylmalate dehydratase activity
BJD11_04795	COG0473	3-isopropylmalate dehydrogenase activity
BJD11_04800	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BJD11_04820	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BJD11_04825	COG0405	Gamma-glutamyltransferase
BJD11_04830	COG0840	transmembrane signaling receptor activity
BJD11_04845	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BJD11_04850	COG3710	Transcriptional regulator
BJD11_04870	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD11_04880	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BJD11_04970	COG0563	adenylate kinase activity
BJD11_04975	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD11_04985	COG3781	membrane
BJD11_04990	COG0671	phosphoesterase, PA-phosphatase related
BJD11_05000	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_05005	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD11_05010	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD11_05040	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD11_05045	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
BJD11_05060	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD11_05075	COG0352	thiamine-phosphate diphosphorylase activity
BJD11_05080	COG1773	rubredoxin
BJD11_05085	COG2912	Transglutaminase-like superfamily
BJD11_05095	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BJD11_05105	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD11_05125	COG3079	Belongs to the UPF0149 family
BJD11_05130	COG0006	proline dipeptidase activity
BJD11_05140	COG0006	proline dipeptidase activity
BJD11_05155	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD11_05160	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD11_05170	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD11_05175	COG1561	YicC-like family, N-terminal region
BJD11_05180	COG0194	GDP metabolic process
BJD11_05185	COG1758	RNA polymerase activity
BJD11_05190	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD11_05200	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD11_05205	COG1957	nucleoside hydrolase
BJD11_05210	COG0254	rRNA binding
BJD11_05230	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD11_05260	COG0714	Associated with various cellular activities
BJD11_05280	COG2304	oxidoreductase activity
BJD11_05290	COG1301	dicarboxylic acid transport
BJD11_05295	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD11_05300	COG4773	Receptor
BJD11_05305	COG0739	heme binding
BJD11_05310	COG1376	ErfK ybiS ycfS ynhG family protein
BJD11_05345	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BJD11_05350	COG4149	molybdate abc transporter
BJD11_05355	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD11_05360	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD11_05360	COG3453	Protein conserved in bacteria
BJD11_05370	COG3047	cAMP biosynthetic process
BJD11_05375	COG3047	cAMP biosynthetic process
BJD11_05385	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD11_05410	COG0126	phosphoglycerate kinase activity
BJD11_05420	COG0469	pyruvate kinase activity
BJD11_05425	COG3588	fructose-bisphosphate aldolase
BJD11_05430	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BJD11_05445	COG1648	precorrin-2 dehydrogenase activity
BJD11_05445	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD11_05490	COG0175	sulfate reduction
BJD11_05495	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD11_05500	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD11_05505	COG0175	sulfate reduction
BJD11_05510	COG2895	sulfate adenylyltransferase (ATP) activity
BJD11_05510	COG0529	Catalyzes the synthesis of activated sulfate
BJD11_05525	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD11_05555	COG0308	aminopeptidase N
BJD11_05570	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD11_05585	COG4948	Mandelate Racemase Muconate Lactonizing
BJD11_05590	COG3250	beta-galactosidase activity
BJD11_05600	COG1609	Transcriptional regulator
BJD11_05615	COG1970	mechanosensitive ion channel activity
BJD11_05640	COG0471	metal ion transport
BJD11_05640	COG3273	potassium ion transport
BJD11_05650	COG2022	thiamine diphosphate biosynthetic process
BJD11_05680	COG2801	Transposase and inactivated derivatives
BJD11_05710	COG2963	transposase activity
BJD11_05730	COG2801	Transposase and inactivated derivatives
BJD11_05815	COG2801	Transposase and inactivated derivatives
BJD11_05825	COG2963	transposase activity
BJD11_05830	COG2963	transposase activity
BJD11_05845	COG2801	Transposase and inactivated derivatives
BJD11_05880	COG2801	Transposase and inactivated derivatives
BJD11_05935	COG0189	ligase activity
BJD11_05945	COG0745	RESPONSE REGULATOR receiver
BJD11_05960	COG2801	Transposase and inactivated derivatives
BJD11_05965	COG2963	transposase activity
BJD11_05985	COG0237	dephospho-CoA kinase activity
BJD11_05990	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BJD11_06000	COG4969	Belongs to the N-Me-Phe pilin family
BJD11_06025	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD11_06030	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BJD11_06045	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD11_06045	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD11_06055	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD11_06060	COG0564	pseudouridine synthase activity
BJD11_06075	COG3011	Protein conserved in bacteria
BJD11_06080	COG0840	transmembrane signaling receptor activity
BJD11_06095	COG3387	PFAM Glycoside hydrolase 15-related
BJD11_06100	COG1877	trehalose-phosphatase activity
BJD11_06105	COG4771	TonB-dependent receptor
BJD11_06150	COG0542	response to heat
BJD11_06155	COG4206	TonB-dependent receptor
BJD11_06175	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD11_06195	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BJD11_06215	COG0019	diaminopimelate decarboxylase activity
BJD11_06225	COG2814	Major facilitator Superfamily
BJD11_06230	COG4264	IucA IucC family
BJD11_06240	COG4772	TonB-dependent receptor
BJD11_06250	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD11_06250	COG4651	solute:proton antiporter activity
BJD11_06285	COG0488	(ABC) transporter
BJD11_06325	COG0477	Major facilitator Superfamily
BJD11_06340	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BJD11_06355	COG0217	transcriptional regulatory protein
BJD11_06360	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BJD11_06365	COG0632	four-way junction helicase activity
BJD11_06370	COG3158	transport of potassium into the cell
BJD11_06380	COG2255	four-way junction helicase activity
BJD11_06385	COG0824	Thioesterase
BJD11_06395	COG0848	biopolymer transport protein
BJD11_06405	COG0823	Involved in the tonB-independent uptake of proteins
BJD11_06410	COG2885	chlorophyll binding
BJD11_06420	COG0602	queuosine metabolic process
BJD11_06430	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BJD11_06435	COG3920	Histidine kinase
BJD11_06455	COG0840	transmembrane signaling receptor activity
BJD11_06460	COG3039	Transposase
BJD11_06470	COG1187	pseudouridine synthase activity
BJD11_06500	COG0514	ATP-dependent DNA helicase (RecQ)
BJD11_06505	COG0783	Belongs to the Dps family
BJD11_06510	COG1643	Atp-dependent helicase
BJD11_06520	COG0837	glucose binding
BJD11_06540	COG0535	radical SAM domain protein
BJD11_06545	COG0535	radical SAM domain protein
BJD11_06550	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BJD11_06555	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BJD11_06565	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD11_06580	COG1215	transferase activity, transferring glycosyl groups
BJD11_06585	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD11_06595	COG1199	ATP-dependent helicase activity
BJD11_06625	COG0189	ligase activity
BJD11_06640	COG0835	chemotaxis
BJD11_06645	COG0840	transmembrane signaling receptor activity
BJD11_06685	COG1595	DNA-templated transcription, initiation
BJD11_06690	COG2304	oxidoreductase activity
BJD11_06695	COG1446	asparaginase
BJD11_06700	COG3142	Participates in the control of copper homeostasis
BJD11_06745	COG3537	Alpha-1,2-mannosidase
BJD11_06755	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD11_06765	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BJD11_06770	COG1388	LysM domain
BJD11_06770	COG3858	chitin binding
BJD11_06785	COG0837	glucose binding
BJD11_06790	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD11_06800	COG0494	nUDIX hydrolase
BJD11_06810	COG3956	TIGRFAM MazG family protein
BJD11_06815	COG1742	UPF0060 membrane protein
BJD11_06825	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BJD11_06830	COG0509	glycine decarboxylation via glycine cleavage system
BJD11_06855	COG1960	acyl-CoA dehydrogenase activity
BJD11_06860	COG2267	carboxylic ester hydrolase activity
BJD11_06865	COG1309	transcriptional regulator
BJD11_06880	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD11_06885	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD11_06890	COG0463	Glycosyl transferase, family 2
BJD11_06895	COG0516	GMP reductase activity
BJD11_06895	COG0517	IMP dehydrogenase activity
BJD11_06900	COG2982	Protein involved in outer membrane biogenesis
BJD11_06905	COG1272	protein, Hemolysin III
BJD11_06910	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BJD11_06915	COG0739	heme binding
BJD11_06920	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD11_06925	COG0626	cystathionine gamma-synthase activity
BJD11_06930	COG0460	homoserine dehydrogenase
BJD11_06930	COG0527	aspartate kinase activity
BJD11_06940	COG1760	l-serine dehydratase
BJD11_06960	COG2353	YceI-like domain
BJD11_06990	COG2814	Major facilitator Superfamily
BJD11_06995	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD11_07005	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD11_07010	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD11_07015	COG0259	pyridoxamine-phosphate oxidase activity
BJD11_07025	COG1842	Phage shock protein A
BJD11_07050	COG0754	glutathionylspermidine amidase activity
BJD11_07055	COG2814	Major facilitator Superfamily
BJD11_07135	COG0531	amino acid
BJD11_07140	COG2197	response regulator
BJD11_07165	COG1113	amino acid transport
BJD11_07175	COG1271	oxidase subunit
BJD11_07180	COG1294	oxidase, subunit
BJD11_07190	COG2239	Acts as a magnesium transporter
BJD11_07200	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD11_07205	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD11_07215	COG1660	Displays ATPase and GTPase activities
BJD11_07220	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BJD11_07225	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD11_07240	COG1137	ATPase activity
BJD11_07245	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD11_07255	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD11_07265	COG0271	Belongs to the BolA IbaG family
BJD11_07270	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BJD11_07295	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD11_07305	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD11_07315	COG0628	permease
BJD11_07325	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BJD11_07345	COG1555	photosystem II stabilization
BJD11_07360	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD11_07365	COG1477	protein flavinylation
BJD11_07390	COG3128	pkhd-type hydroxylase
BJD11_07395	COG4774	siderophore transport
BJD11_07415	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD11_07420	COG0719	Fe-S assembly protein
BJD11_07425	COG0396	ATPase activity
BJD11_07430	COG0719	Fe-S assembly protein
BJD11_07435	COG1959	2 iron, 2 sulfur cluster binding
BJD11_07445	COG0693	protein deglycase activity
BJD11_07465	COG0739	heme binding
BJD11_07480	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD11_07505	COG0519	Catalyzes the synthesis of GMP from XMP
BJD11_07515	COG1678	Uncharacterized ACR, COG1678
BJD11_07520	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD11_07525	COG0540	Belongs to the ATCase OTCase family
BJD11_07530	COG1764	response to oxidative stress
BJD11_07540	COG0384	phenazine biosynthesis protein PhzF
BJD11_07545	COG0384	phenazine biosynthesis protein PhzF
BJD11_07550	COG0527	aspartate kinase activity
BJD11_07565	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BJD11_07580	COG0142	geranyltranstransferase activity
BJD11_07585	COG0629	single-stranded DNA binding
BJD11_07590	COG4251	negative regulation of phosphorylation
BJD11_07590	COG3706	GGDEF domain
BJD11_07590	COG2203	Gaf domain
BJD11_07590	COG5001	Diguanylate cyclase
BJD11_07595	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_07595	COG3321	synthase
BJD11_07595	COG0604	alcohol dehydrogenase
BJD11_07600	COG2080	2 iron, 2 sulfur cluster binding
BJD11_07605	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD11_07610	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD11_07615	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BJD11_07665	COG2879	small protein
BJD11_07670	COG1966	Carbon starvation protein
BJD11_07675	COG1741	Belongs to the pirin family
BJD11_07690	COG1741	Belongs to the pirin family
BJD11_07700	COG1515	deoxyribonuclease V activity
BJD11_07705	COG0588	phosphoglycerate mutase activity
BJD11_07720	COG3590	peptidase
BJD11_07725	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD11_07730	COG2201	protein-glutamate methylesterase activity
BJD11_07735	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD11_07740	COG2200	EAL domain
BJD11_07740	COG2199	diguanylate cyclase activity
BJD11_07740	COG2202	Pas domain
BJD11_07745	COG0835	chemotaxis
BJD11_07750	COG0840	transmembrane signaling receptor activity
BJD11_07760	COG0643	Histidine kinase
BJD11_07760	COG2198	Histidine kinase
BJD11_07770	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD11_07780	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD11_07785	COG0745	RESPONSE REGULATOR receiver
BJD11_07790	COG2205	protein histidine kinase activity
BJD11_07805	COG4452	Inner membrane protein CreD
BJD11_07830	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD11_07835	COG0735	belongs to the Fur family
BJD11_07855	COG1538	Outer membrane efflux protein
BJD11_07860	COG1309	transcriptional regulator
BJD11_07875	COG2207	Transcriptional regulator
BJD11_07885	COG0583	DNA-binding transcription factor activity
BJD11_07890	COG2814	Major facilitator Superfamily
BJD11_07895	COG0667	Aldo Keto reductase
BJD11_07950	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD11_08000	COG5002	protein histidine kinase activity
BJD11_08000	COG5001	Diguanylate cyclase
BJD11_08005	COG1187	pseudouridine synthase activity
BJD11_08010	COG3706	GGDEF domain
BJD11_08030	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD11_08035	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BJD11_08040	COG0475	glutathione-regulated potassium exporter activity
BJD11_08050	COG0745	RESPONSE REGULATOR receiver
BJD11_08055	COG1538	Outer membrane efflux protein
BJD11_08080	COG1132	(ABC) transporter
BJD11_08125	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD11_08130	COG2155	Conserved Protein
BJD11_08160	COG3118	belongs to the thioredoxin family
BJD11_08170	COG0495	leucyl-tRNA aminoacylation
BJD11_08190	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BJD11_08205	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BJD11_08215	COG2968	Membrane
BJD11_08220	COG0424	maF-like protein
BJD11_08225	COG1530	ribonuclease E activity
BJD11_08230	COG3164	Protein of unknown function
BJD11_08240	COG0312	modulator of DNA gyrase
BJD11_08245	COG3028	Belongs to the UPF0307 family
BJD11_08250	COG0312	modulator of DNA gyrase
BJD11_08260	COG4104	PAAR repeat-containing protein
BJD11_08265	COG0142	geranyltranstransferase activity
BJD11_08270	COG1722	exodeoxyribonuclease VII activity
BJD11_08275	COG0037	tRNA processing
BJD11_08285	COG1785	Belongs to the alkaline phosphatase family
BJD11_08290	COG1301	dicarboxylic acid transport
BJD11_08305	COG0791	NLP P60 protein
BJD11_08310	COG0791	NLP P60 protein
BJD11_08315	COG1047	Peptidyl-prolyl cis-trans
BJD11_08320	COG2311	Membrane
BJD11_08325	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD11_08330	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD11_08350	COG3590	peptidase
BJD11_08360	COG3590	peptidase
BJD11_08380	COG0489	protein tyrosine kinase activity
BJD11_08390	COG0717	Belongs to the dCTP deaminase family
BJD11_08415	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD11_08420	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD11_08435	COG0494	nUDIX hydrolase
BJD11_08440	COG0433	COG0433 Predicted ATPase
BJD11_08450	COG0688	phosphatidylethanolamine metabolic process
BJD11_08460	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD11_08465	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BJD11_08470	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD11_08475	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD11_08495	COG0101	tRNA pseudouridine synthase activity
BJD11_08500	COG0135	phosphoribosylanthranilate isomerase activity
BJD11_08510	COG0133	tryptophan synthase activity
BJD11_08525	COG2801	Transposase and inactivated derivatives
BJD11_08535	COG0159	tryptophan synthase activity
BJD11_08540	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BJD11_08545	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD11_08585	COG4221	oxidoreductase activity
BJD11_08590	COG0149	triose-phosphate isomerase activity
BJD11_08605	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD11_08610	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD11_08615	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD11_08620	COG0649	NAD binding
BJD11_08625	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BJD11_08630	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BJD11_08635	COG1034	ATP synthesis coupled electron transport
BJD11_08640	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BJD11_08645	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD11_08655	COG0713	ATP synthesis coupled electron transport
BJD11_08670	COG1007	ATP synthesis coupled electron transport
BJD11_08680	COG0779	Required for maturation of 30S ribosomal subunits
BJD11_08685	COG0195	Participates in both transcription termination and antitermination
BJD11_08690	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BJD11_08695	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD11_08700	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD11_08705	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD11_08710	COG1185	polyribonucleotide nucleotidyltransferase activity
BJD11_08740	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD11_08745	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD11_08755	COG2095	MarC family integral membrane protein
BJD11_08765	COG1611	Belongs to the LOG family
BJD11_08810	COG0556	nucleotide-excision repair
BJD11_08830	COG3505	Type IV secretory pathway VirD4
BJD11_08850	COG2948	multi-organism process
BJD11_08870	COG3702	type iv secretory pathway
BJD11_08885	COG0366	Alpha amylase catalytic
BJD11_08900	COG1082	Xylose isomerase domain protein TIM barrel
BJD11_08925	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BJD11_08930	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BJD11_08935	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BJD11_08940	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BJD11_08945	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD11_08950	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD11_08950	COG0072	phenylalanine-tRNA ligase activity
BJD11_08955	COG0776	regulation of translation
BJD11_09000	COG0438	transferase activity, transferring glycosyl groups
BJD11_09005	COG0438	transferase activity, transferring glycosyl groups
BJD11_09040	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD11_09045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD11_09050	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD11_09070	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BJD11_09080	COG1960	acyl-CoA dehydrogenase activity
BJD11_09090	COG3040	lipid binding
BJD11_09120	COG0784	Response regulator, receiver
BJD11_09120	COG4191	Histidine kinase
BJD11_09125	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BJD11_09130	COG1194	a g-specific adenine glycosylase
BJD11_09135	COG0552	protein localization to endoplasmic reticulum
BJD11_09145	COG3938	Belongs to the proline racemase family
BJD11_09150	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD11_09165	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD11_09175	COG0006	proline dipeptidase activity
BJD11_09190	COG0531	amino acid
BJD11_09265	COG2963	transposase activity
BJD11_09300	COG0326	Molecular chaperone. Has ATPase activity
BJD11_09305	COG0742	ribosomal rna small subunit methyltransferase
BJD11_09310	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD11_09325	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD11_09330	COG0405	Gamma-glutamyltransferase
BJD11_09340	COG3291	Pkd domain containing protein
BJD11_09345	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD11_09385	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD11_09390	COG0343	queuine tRNA-ribosyltransferase activity
BJD11_09395	COG1862	Preprotein translocase
BJD11_09405	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD11_09420	COG2801	Transposase and inactivated derivatives
BJD11_09460	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD11_09460	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD11_09465	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD11_09470	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD11_09470	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD11_09475	COG1609	Transcriptional regulator
BJD11_09480	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD11_09485	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_09495	COG2902	Dehydrogenase
BJD11_09500	COG0477	Major facilitator Superfamily
BJD11_09510	COG5002	protein histidine kinase activity
BJD11_09510	COG2205	protein histidine kinase activity
BJD11_09510	COG0784	Response regulator, receiver
BJD11_09515	COG2733	membrane
BJD11_09540	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD11_09545	COG0243	molybdopterin cofactor binding
BJD11_09555	COG0477	Major facilitator Superfamily
BJD11_09560	COG2703	oxygen carrier activity
BJD11_09565	COG3706	GGDEF domain
BJD11_09565	COG0745	RESPONSE REGULATOR receiver
BJD11_09570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD11_09575	COG0174	glutamine synthetase
BJD11_09580	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BJD11_09595	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD11_09625	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD11_09630	COG1177	transmembrane transport
BJD11_09640	COG1012	belongs to the aldehyde dehydrogenase family
BJD11_09655	COG4535	Mg2 and Co2 transporter CorC
BJD11_09665	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD11_09675	COG1702	phosphate starvation-inducible protein PhoH
BJD11_09680	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD11_09695	COG0741	lytic transglycosylase activity
BJD11_09705	COG0723	plastoquinol--plastocyanin reductase activity
BJD11_09710	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD11_09715	COG2857	Cytochrome c1
BJD11_09720	COG0625	glutathione transferase activity
BJD11_09725	COG2969	positive regulation of protein catabolic process
BJD11_09745	COG1201	RNA secondary structure unwinding
BJD11_09750	COG2094	Belongs to the DNA glycosylase MPG family
BJD11_09755	COG0840	transmembrane signaling receptor activity
BJD11_09760	COG0835	chemotaxis
BJD11_09800	COG0582	viral genome integration into host DNA
BJD11_09840	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD11_09855	COG1570	exodeoxyribonuclease VII activity
BJD11_09860	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD11_09865	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD11_09865	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD11_09870	COG0802	atpase or kinase
BJD11_09875	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD11_09880	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD11_09905	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_09910	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD11_09915	COG0501	Belongs to the peptidase M48B family
BJD11_09925	COG2081	HI0933 family
BJD11_09930	COG4681	YaeQ
BJD11_09940	COG0625	glutathione transferase activity
BJD11_09950	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD11_09955	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD11_09960	COG0513	Belongs to the DEAD box helicase family
BJD11_09985	COG0483	inositol monophosphate 1-phosphatase activity
BJD11_10000	COG5001	Diguanylate cyclase
BJD11_10000	COG3300	MHYT domain
BJD11_10005	COG1509	lysine 2,3-aminomutase activity
BJD11_10010	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD11_10020	COG0402	S-adenosylhomocysteine deaminase activity
BJD11_10025	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD11_10085	COG4303	Ethanolamine ammonia lyase large subunit
BJD11_10110	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BJD11_10115	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BJD11_10120	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD11_10130	COG2166	iron-sulfur cluster assembly
BJD11_10135	COG0215	cysteine-tRNA ligase activity
BJD11_10145	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BJD11_10150	COG0137	argininosuccinate synthase activity
BJD11_10165	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BJD11_10175	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD11_10180	COG0165	Argininosuccinate lyase
BJD11_10190	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BJD11_10195	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BJD11_10225	COG1294	oxidase, subunit
BJD11_10235	COG4988	ABC transporter
BJD11_10240	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD11_10245	COG1278	Cold shock
BJD11_10250	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD11_10270	COG1138	Cytochrome C-type biogenesis protein
BJD11_10275	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD11_10295	COG4133	protoheme IX ABC transporter activity
BJD11_10300	COG0436	Aminotransferase
BJD11_10320	COG1187	pseudouridine synthase activity
BJD11_10325	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BJD11_10330	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BJD11_10335	COG2350	Protein conserved in bacteria
BJD11_10365	COG1175	transmembrane transport
BJD11_10370	COG0395	ABC-type sugar transport system, permease component
BJD11_10395	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD11_10400	COG2957	Belongs to the agmatine deiminase family
BJD11_10410	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BJD11_10415	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BJD11_10420	COG0539	negative regulation of cytoplasmic translation
BJD11_10425	COG0776	regulation of translation
BJD11_10435	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD11_10440	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD11_10450	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BJD11_10455	COG0475	glutathione-regulated potassium exporter activity
BJD11_10455	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD11_10465	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD11_10475	COG0519	Catalyzes the synthesis of GMP from XMP
BJD11_10475	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD11_10485	COG0582	viral genome integration into host DNA
BJD11_10515	COG2801	Transposase and inactivated derivatives
BJD11_10525	COG1484	DNA-dependent DNA replication
BJD11_10690	COG2963	transposase activity
BJD11_10715	COG0640	Transcriptional regulator
BJD11_10750	COG2951	lytic endotransglycosylase activity
BJD11_10755	COG4644	lycopene metabolic process
BJD11_10785	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD11_10790	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_10805	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BJD11_10805	COG0316	Belongs to the HesB IscA family
BJD11_10810	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD11_10820	COG0428	transporter
BJD11_10825	COG3064	Membrane
BJD11_10835	COG1530	ribonuclease E activity
BJD11_10865	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BJD11_10890	COG2801	Transposase and inactivated derivatives
BJD11_10930	COG0629	single-stranded DNA binding
BJD11_10940	COG0270	DNA (cytosine-5-)-methyltransferase activity
BJD11_10995	COG4644	lycopene metabolic process
BJD11_11035	COG2963	transposase activity
BJD11_11040	COG2801	Transposase and inactivated derivatives
BJD11_11075	COG2801	Transposase and inactivated derivatives
BJD11_11090	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD11_11095	COG0322	excinuclease ABC activity
BJD11_11105	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD11_11110	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD11_11115	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD11_11120	COG1132	(ABC) transporter
BJD11_11130	COG0811	peptide transport
BJD11_11145	COG1136	(ABC) transporter
BJD11_11150	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD11_11160	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BJD11_11165	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD11_11180	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD11_11195	COG0354	folic acid binding
BJD11_11205	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD11_11210	COG0837	glucose binding
BJD11_11215	COG0363	glucosamine-6-phosphate deaminase activity
BJD11_11220	COG0129	dihydroxy-acid dehydratase activity
BJD11_11225	COG0800	Aldolase
BJD11_11310	COG0582	viral genome integration into host DNA
BJD11_11325	COG2205	protein histidine kinase activity
BJD11_11325	COG0784	Response regulator, receiver
BJD11_11330	COG2183	response to ionizing radiation
BJD11_11340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD11_11340	COG0723	plastoquinol--plastocyanin reductase activity
BJD11_11355	COG3243	poly(R)-hydroxyalkanoic acid synthase
BJD11_11365	COG1183	phosphatidylcholine synthase activity
BJD11_11370	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_11385	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BJD11_11395	COG0668	transmembrane transport
BJD11_11400	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD11_11405	COG0590	tRNA wobble adenosine to inosine editing
BJD11_11410	COG1321	iron dependent repressor
BJD11_11415	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD11_11435	COG2814	Major facilitator Superfamily
BJD11_11450	COG1335	isochorismatase
BJD11_11460	COG4585	Histidine kinase
BJD11_11465	COG2197	response regulator
BJD11_11485	COG0583	DNA-binding transcription factor activity
BJD11_11505	COG0633	Ferredoxin
BJD11_11515	COG0583	DNA-binding transcription factor activity
BJD11_11520	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD11_11525	COG3002	Belongs to the UPF0753 family
BJD11_11535	COG0583	DNA-binding transcription factor activity
BJD11_11545	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_11550	COG2818	Glycosylase
BJD11_11570	COG1196	nuclear chromosome segregation
BJD11_11575	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD11_11580	COG1061	Type III restriction enzyme res subunit
BJD11_11585	COG1002	Type II restriction enzyme, methylase subunits
BJD11_11625	COG2801	Transposase and inactivated derivatives
BJD11_11645	COG2197	response regulator
BJD11_11680	COG1858	cytochrome C peroxidase
BJD11_11690	COG0583	DNA-binding transcription factor activity
BJD11_11710	COG0515	serine threonine protein kinase
BJD11_11715	COG0631	protein serine/threonine phosphatase activity
BJD11_11750	COG3501	Rhs element vgr protein
BJD11_11855	COG3279	Response regulator of the LytR AlgR family
BJD11_11880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_11900	COG4566	intracellular signal transduction
BJD11_11910	COG5001	Diguanylate cyclase
BJD11_11930	COG3685	Protein conserved in bacteria
BJD11_11950	COG0243	molybdopterin cofactor binding
BJD11_11960	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD11_11965	COG2223	nitrite transmembrane transporter activity
BJD11_11970	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BJD11_11980	COG1648	precorrin-2 dehydrogenase activity
BJD11_11980	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD11_12005	COG0746	molybdenum cofactor guanylyltransferase activity
BJD11_12010	COG0303	'Molybdopterin
BJD11_12020	COG0708	Exodeoxyribonuclease III
BJD11_12060	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD11_12065	COG0303	'Molybdopterin
BJD11_12070	COG1160	GTP binding
BJD11_12075	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD11_12085	COG1426	Protein conserved in bacteria
BJD11_12095	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BJD11_12100	COG0105	UTP biosynthetic process
BJD11_12110	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD11_12110	COG1024	Enoyl-CoA hydratase
BJD11_12115	COG0183	Belongs to the thiolase family
BJD11_12120	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD11_12125	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD11_12140	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BJD11_12150	COG1674	ftsk spoiiie
BJD11_12155	COG0492	ferredoxin-NADP+ reductase activity
BJD11_12170	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BJD11_12175	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BJD11_12180	COG0542	response to heat
BJD11_12185	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BJD11_12195	COG0482	sulfurtransferase activity
BJD11_12200	COG2915	High frequency lysogenization protein hflD homolog
BJD11_12230	COG5002	protein histidine kinase activity
BJD11_12250	COG0784	Response regulator, receiver
BJD11_12250	COG0835	chemotaxis
BJD11_12260	COG1558	bacterial-type flagellum-dependent cell motility
BJD11_12265	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD11_12270	COG1749	Flagellar hook protein flgE
BJD11_12275	COG4787	bacterial-type flagellum-dependent cell motility
BJD11_12285	COG4786	Flagellar basal body rod
BJD11_12290	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BJD11_12295	COG1706	bacterial-type flagellum-dependent cell motility
BJD11_12300	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD11_12300	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD11_12310	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD11_12315	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD11_12320	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD11_12350	COG2201	protein-glutamate methylesterase activity
BJD11_12355	COG2204	response regulator
BJD11_12370	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD11_12375	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_12410	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD11_12415	COG0275	rRNA processing
BJD11_12425	COG1677	Flagellar hook-basal body complex protein FliE
BJD11_12475	COG3190	flagellar
BJD11_12485	COG1987	bacterial-type flagellum assembly
BJD11_12490	COG1684	flagellar biosynthetic protein fliR
BJD11_12495	COG5001	Diguanylate cyclase
BJD11_12495	COG3300	MHYT domain
BJD11_12505	COG3300	MHYT domain
BJD11_12505	COG5001	Diguanylate cyclase
BJD11_12530	COG0455	bacterial-type flagellum organization
BJD11_12550	COG0643	Histidine kinase
BJD11_12550	COG2198	Histidine kinase
BJD11_12590	COG2801	Transposase and inactivated derivatives
BJD11_12595	COG2963	transposase activity
BJD11_12625	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD11_12630	COG1360	Flagellar Motor Protein
BJD11_12635	COG1192	Involved in chromosome partitioning
BJD11_12640	COG0835	chemotaxis
BJD11_12650	COG0745	RESPONSE REGULATOR receiver
BJD11_12660	COG0840	transmembrane signaling receptor activity
BJD11_12665	COG0840	transmembrane signaling receptor activity
BJD11_12675	COG0840	transmembrane signaling receptor activity
BJD11_12680	COG0840	transmembrane signaling receptor activity
BJD11_12695	COG0840	transmembrane signaling receptor activity
BJD11_12700	COG0840	transmembrane signaling receptor activity
BJD11_12705	COG0840	transmembrane signaling receptor activity
BJD11_12715	COG0840	transmembrane signaling receptor activity
BJD11_12720	COG0840	transmembrane signaling receptor activity
BJD11_12725	COG0840	transmembrane signaling receptor activity
BJD11_12730	COG0840	transmembrane signaling receptor activity
BJD11_12735	COG0840	transmembrane signaling receptor activity
BJD11_12750	COG0835	chemotaxis
BJD11_12760	COG0840	transmembrane signaling receptor activity
BJD11_12770	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD11_12775	COG2201	protein-glutamate methylesterase activity
BJD11_12785	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD11_12815	COG0318	PFAM AMP-dependent synthetase and ligase
BJD11_12820	COG1024	Enoyl-CoA hydratase
BJD11_12825	COG0784	Response regulator, receiver
BJD11_12825	COG2205	protein histidine kinase activity
BJD11_12825	COG2198	Histidine kinase
BJD11_12840	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD11_12845	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD11_12850	COG3279	Response regulator of the LytR AlgR family
BJD11_12860	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD11_12870	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD11_12875	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD11_12885	COG0505	Belongs to the CarA family
BJD11_12890	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BJD11_12900	COG2258	MOSC domain
BJD11_12905	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD11_12950	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD11_12970	COG0277	FAD linked oxidase domain protein
BJD11_12975	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD11_12985	COG0531	amino acid
BJD11_12990	COG0531	amino acid
BJD11_12995	COG0235	Class ii aldolase
BJD11_13000	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BJD11_13005	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BJD11_13020	COG0140	phosphoribosyl-ATP diphosphatase activity
BJD11_13020	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BJD11_13025	COG0107	imidazoleglycerol-phosphate synthase activity
BJD11_13030	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD11_13035	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD11_13040	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD11_13040	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD11_13045	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD11_13050	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD11_13055	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BJD11_13065	COG0124	histidyl-tRNA synthetase
BJD11_13070	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD11_13080	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BJD11_13095	COG0460	homoserine dehydrogenase
BJD11_13095	COG0527	aspartate kinase activity
BJD11_13105	COG2963	transposase activity
BJD11_13130	COG2963	transposase activity
BJD11_13140	COG3210	domain, Protein
BJD11_13170	COG2963	transposase activity
BJD11_13175	COG2801	Transposase and inactivated derivatives
BJD11_13180	COG2801	Transposase and inactivated derivatives
BJD11_13195	COG2963	transposase activity
BJD11_13200	COG2801	Transposase and inactivated derivatives
BJD11_13210	COG2801	Transposase and inactivated derivatives
BJD11_13225	COG2963	transposase activity
BJD11_13255	COG2801	Transposase and inactivated derivatives
BJD11_13280	COG2801	Transposase and inactivated derivatives
BJD11_13305	COG1012	belongs to the aldehyde dehydrogenase family
BJD11_13325	COG0167	dihydroorotate dehydrogenase activity
BJD11_13330	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD11_13335	COG0697	spore germination
BJD11_13340	COG1794	racemase activity, acting on amino acids and derivatives
BJD11_13350	COG0671	phosphoesterase, PA-phosphatase related
BJD11_13355	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD11_13370	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BJD11_13375	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD11_13380	COG5001	Diguanylate cyclase
BJD11_13380	COG2203	Gaf domain
BJD11_13380	COG4251	negative regulation of phosphorylation
BJD11_13380	COG3706	GGDEF domain
BJD11_13395	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD11_13420	COG0166	Belongs to the GPI family
BJD11_13425	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BJD11_13430	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BJD11_13435	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BJD11_13455	COG1469	GTP cyclohydrolase I activity
BJD11_13460	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD11_13475	COG0477	Major facilitator Superfamily
BJD11_13480	COG2115	Belongs to the xylose isomerase family
BJD11_13485	COG1070	Carbohydrate kinase
BJD11_13495	COG1501	Belongs to the glycosyl hydrolase 31 family
BJD11_13540	COG0800	Aldolase
BJD11_13545	COG4948	Mandelate Racemase Muconate Lactonizing
BJD11_13555	COG3734	2-keto-3-deoxy-galactonokinase
BJD11_13560	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD11_13570	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD11_13585	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD11_13590	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD11_13605	COG0351	phosphomethylpyrimidine kinase
BJD11_13630	COG0583	DNA-binding transcription factor activity
BJD11_13640	COG1741	Belongs to the pirin family
BJD11_13660	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD11_13665	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD11_13670	COG2137	regulation of response to DNA damage stimulus
BJD11_13680	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BJD11_13685	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD11_13695	COG1546	Belongs to the CinA family
BJD11_13700	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD11_13705	COG1923	regulation of RNA biosynthetic process
BJD11_13710	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD11_13715	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD11_13720	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BJD11_13725	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD11_13730	COG1534	Rna-binding protein
BJD11_13745	COG1238	metal cluster binding
BJD11_13750	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD11_13755	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BJD11_13760	COG2840	Smr protein MutS2
BJD11_13765	COG0585	pseudouridine synthase activity
BJD11_13770	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD11_13775	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BJD11_13780	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD11_13785	COG0148	phosphopyruvate hydratase activity
BJD11_13795	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BJD11_13800	COG0504	CTP synthase activity
BJD11_13825	COG0306	phosphate transporter
BJD11_13840	COG1253	flavin adenine dinucleotide binding
BJD11_13855	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD11_13865	COG1132	(ABC) transporter
BJD11_13870	COG1136	(ABC) transporter
BJD11_13890	COG0438	transferase activity, transferring glycosyl groups
BJD11_13900	COG2264	protein methyltransferase activity
BJD11_13930	COG2244	polysaccharide biosynthetic process
BJD11_13970	COG1595	DNA-templated transcription, initiation
BJD11_13985	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD11_13995	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD11_14005	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD11_14020	COG4191	Histidine kinase
BJD11_14020	COG0784	Response regulator, receiver
BJD11_14025	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
BJD11_14035	COG0784	Response regulator, receiver
BJD11_14035	COG2205	protein histidine kinase activity
BJD11_14035	COG5002	protein histidine kinase activity
BJD11_14065	COG0840	transmembrane signaling receptor activity
BJD11_14080	COG2801	Transposase and inactivated derivatives
BJD11_14100	COG0583	DNA-binding transcription factor activity
BJD11_14105	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD11_14110	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BJD11_14125	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD11_14130	COG1605	Chorismate mutase
BJD11_14130	COG0077	Prephenate dehydratase
BJD11_14135	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BJD11_14140	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BJD11_14145	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BJD11_14185	COG1228	amidohydrolase
BJD11_14190	COG2986	histidine ammonia-lyase
BJD11_14200	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD11_14210	COG4993	Dehydrogenase
BJD11_14220	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BJD11_14235	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BJD11_14240	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BJD11_14245	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD11_14255	COG3115	cell septum assembly
BJD11_14265	COG0359	binds to the 23S rRNA
BJD11_14270	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BJD11_14275	COG0360	Binds together with S18 to 16S ribosomal RNA
BJD11_14280	COG0316	Belongs to the HesB IscA family
BJD11_14290	COG0017	Asparaginyl-tRNA synthetase
BJD11_14310	COG2808	Putative FMN-binding domain
BJD11_14360	COG0288	reversible hydration of carbon dioxide
BJD11_14365	COG0662	Cupin 2, conserved barrel domain protein
BJD11_14375	COG3844	kynureninase activity
BJD11_14380	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD11_14390	COG2925	Exonuclease
BJD11_14410	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD11_14415	COG0116	Belongs to the methyltransferase superfamily
BJD11_14415	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD11_14460	COG0494	nUDIX hydrolase
BJD11_14470	COG1024	Enoyl-CoA hydratase
BJD11_14480	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD11_14485	COG0659	secondary active sulfate transmembrane transporter activity
BJD11_14510	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD11_14515	COG0573	inorganic phosphate transmembrane transporter activity
BJD11_14520	COG0581	inorganic phosphate transmembrane transporter activity
BJD11_14525	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD11_14530	COG0704	Plays a role in the regulation of phosphate uptake
BJD11_14540	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD11_14545	COG3706	GGDEF domain
BJD11_14555	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD11_14570	COG0557	exoribonuclease II activity
BJD11_14595	COG1960	acyl-CoA dehydrogenase activity
BJD11_14605	COG0646	methionine synthase
BJD11_14605	COG1410	methionine synthase
BJD11_14610	COG1410	methionine synthase
BJD11_14610	COG0646	methionine synthase
BJD11_14620	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD11_14645	COG2900	Belongs to the SlyX family
BJD11_14660	COG0386	Belongs to the glutathione peroxidase family
BJD11_14670	COG1725	Transcriptional regulator
BJD11_14675	COG1131	(ABC) transporter
BJD11_14705	COG1253	flavin adenine dinucleotide binding
BJD11_14725	COG2850	peptidyl-arginine hydroxylation
BJD11_14760	COG1132	(ABC) transporter
BJD11_14765	COG0583	DNA-binding transcription factor activity
BJD11_14795	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD11_14805	COG0484	heat shock protein binding
BJD11_14810	COG0443	Heat shock 70 kDa protein
BJD11_14815	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD11_14820	COG1420	regulation of RNA biosynthetic process
BJD11_14825	COG0497	DNA recombination
BJD11_14835	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD11_14850	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD11_14875	COG2801	Transposase and inactivated derivatives
BJD11_14900	COG3706	GGDEF domain
BJD11_14910	COG3706	GGDEF domain
BJD11_14945	COG0583	DNA-binding transcription factor activity
BJD11_14955	COG0415	Belongs to the DNA photolyase family
BJD11_14960	COG0305	Participates in initiation and elongation during chromosome replication
BJD11_14970	COG0367	asparagine synthase
BJD11_14990	COG1960	acyl-CoA dehydrogenase activity
BJD11_15005	COG0084	hydrolase, TatD family'
BJD11_15010	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD11_15070	COG0386	Belongs to the glutathione peroxidase family
BJD11_15075	COG0339	signal peptide processing
BJD11_15135	COG2814	Major facilitator Superfamily
BJD11_15140	COG1566	PFAM secretion protein HlyD family protein
BJD11_15165	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD11_15190	COG0367	asparagine synthase
BJD11_15195	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD11_15200	COG1393	Belongs to the ArsC family
BJD11_15210	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD11_15215	COG0024	Methionine aminopeptidase
BJD11_15250	COG0052	Belongs to the universal ribosomal protein uS2 family
BJD11_15255	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD11_15260	COG3706	GGDEF domain
BJD11_15260	COG0745	RESPONSE REGULATOR receiver
BJD11_15265	COG0528	UMP kinase activity
BJD11_15270	COG0233	cytoplasmic translational termination
BJD11_15275	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BJD11_15280	COG0575	Belongs to the CDS family
BJD11_15285	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BJD11_15290	COG0750	zinc metalloprotease
BJD11_15305	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD11_15310	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD11_15315	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD11_15320	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD11_15330	COG0587	DNA-directed DNA polymerase activity
BJD11_15335	COG0825	malonyl-CoA metabolic process
BJD11_15370	COG1695	Transcriptional regulator
BJD11_15390	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD11_15400	COG2040	homocysteine
BJD11_15405	COG0833	amino acid
BJD11_15420	COG0346	lactoylglutathione lyase activity
BJD11_15440	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD11_15440	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD11_15450	COG2878	Part of a membrane complex involved in electron transport
BJD11_15470	COG1595	DNA-templated transcription, initiation
BJD11_15495	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD11_15510	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD11_15515	COG0251	oxidation-reduction process
BJD11_15525	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BJD11_15525	COG0392	lysyltransferase activity
BJD11_15560	COG2814	Major facilitator Superfamily
BJD11_15565	COG1902	pentaerythritol trinitrate reductase activity
BJD11_15575	COG2824	Alkylphosphonate utilization operon protein PhnA
BJD11_15590	COG1077	Cell shape determining protein MreB Mrl
BJD11_15610	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD11_15620	COG5487	UPF0391 membrane protein
BJD11_15625	COG1451	nucleotide metabolic process
BJD11_15650	COG0183	Belongs to the thiolase family
BJD11_15665	COG3706	GGDEF domain
BJD11_15665	COG0745	RESPONSE REGULATOR receiver
BJD11_15685	COG1793	dna ligase
BJD11_15685	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD11_15695	COG1793	dna ligase
BJD11_15700	COG1201	RNA secondary structure unwinding
BJD11_15715	COG1278	Cold shock
BJD11_15720	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD11_15730	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD11_15735	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD11_15740	COG1233	COG1233 Phytoene dehydrogenase and related
BJD11_15745	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BJD11_15755	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD11_15770	COG1381	Involved in DNA repair and RecF pathway recombination
BJD11_15785	COG2963	transposase activity
BJD11_15795	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BJD11_15800	COG0571	ribonuclease III activity
BJD11_15815	COG0481	GTPase activity
BJD11_15835	COG1024	Enoyl-CoA hydratase
BJD11_15835	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD11_15855	COG1024	Enoyl-CoA hydratase
BJD11_15860	COG1960	acyl-CoA dehydrogenase activity
BJD11_15880	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BJD11_15885	COG3250	beta-galactosidase activity
BJD11_15900	COG2963	transposase activity
BJD11_15905	COG2801	Transposase and inactivated derivatives
BJD11_15920	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD11_15930	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD11_15955	COG0534	Mate efflux family protein
BJD11_15960	COG0335	large ribosomal subunit rRNA binding
BJD11_15965	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD11_15970	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BJD11_15975	COG0228	four-way junction DNA binding
BJD11_15980	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD11_15990	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD11_15995	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD11_16020	COG0784	Response regulator, receiver
BJD11_16020	COG4191	Histidine kinase
BJD11_16025	COG4999	Histidine kinase
BJD11_16025	COG3850	Histidine kinase
BJD11_16025	COG2205	protein histidine kinase activity
BJD11_16025	COG3437	response regulator, receiver
BJD11_16030	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD11_16040	COG2205	protein histidine kinase activity
BJD11_16045	COG5507	3-demethylubiquinone-9 3-methyltransferase
BJD11_16055	COG4771	TonB-dependent receptor
BJD11_16080	COG2172	sigma factor antagonist activity
BJD11_16085	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD11_16090	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD11_16100	COG0326	Molecular chaperone. Has ATPase activity
BJD11_16105	COG2207	Transcriptional regulator
BJD11_16115	COG3152	Membrane
BJD11_16130	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BJD11_16135	COG1845	cytochrome c oxidase, subunit III
BJD11_16140	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD11_16155	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD11_16160	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD11_16165	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD11_16170	COG0196	riboflavin kinase activity
BJD11_16180	COG0268	Binds directly to 16S ribosomal RNA
BJD11_16185	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BJD11_16190	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BJD11_16195	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD11_16200	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD11_16205	COG0824	Thioesterase
BJD11_16215	COG1024	Enoyl-CoA hydratase
BJD11_16230	COG1595	DNA-templated transcription, initiation
BJD11_16245	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD11_16265	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD11_16290	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD11_16305	COG2197	response regulator
BJD11_16310	COG4585	Histidine kinase
BJD11_16325	COG0850	regulation of cytokinetic process
BJD11_16330	COG2894	cell division
BJD11_16335	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD11_16345	COG0642	Histidine kinase
BJD11_16350	COG0745	RESPONSE REGULATOR receiver
BJD11_16365	COG2194	sulfuric ester hydrolase activity
BJD11_16385	COG2814	Major facilitator Superfamily
BJD11_16410	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD11_16410	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD11_16415	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD11_16420	COG0656	L-ascorbic acid biosynthetic process
BJD11_16425	COG0753	catalase activity
BJD11_16450	COG2207	Transcriptional regulator
BJD11_16450	COG1917	Cupin 2, conserved barrel domain protein
BJD11_16465	COG0823	Involved in the tonB-independent uptake of proteins
BJD11_16465	COG1506	peptidase
BJD11_16480	COG1297	OPT oligopeptide transporter protein
BJD11_16500	COG0587	DNA-directed DNA polymerase activity
BJD11_16520	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD11_16555	COG2080	2 iron, 2 sulfur cluster binding
BJD11_16560	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD11_16565	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD11_16590	COG0492	ferredoxin-NADP+ reductase activity
BJD11_16600	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_16610	COG3537	Alpha-1,2-mannosidase
BJD11_16615	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_16620	COG3387	PFAM Glycoside hydrolase 15-related
BJD11_16635	COG0406	alpha-ribazole phosphatase activity
BJD11_16635	COG0328	RNA-DNA hybrid ribonuclease activity
BJD11_16670	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BJD11_16680	COG2963	transposase activity
BJD11_16695	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
BJD11_16740	COG1309	transcriptional regulator
BJD11_16745	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_16755	COG0308	aminopeptidase N
BJD11_16760	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD11_16770	COG0330	HflC and HflK could
BJD11_16775	COG0330	HflC and HflK could
BJD11_16805	COG4953	penicillin-binding protein 1C
BJD11_16825	COG2373	Large extracellular alpha-helical protein
BJD11_16845	COG2828	Protein conserved in bacteria
BJD11_16870	COG3829	transcription factor binding
BJD11_16905	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD11_16910	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD11_16920	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD11_16940	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD11_16945	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD11_16960	COG2801	Transposase and inactivated derivatives
BJD11_16965	COG2963	transposase activity
BJD11_16985	COG0714	Associated with various cellular activities
BJD11_17005	COG0537	adenosine 5'-monophosphoramidase activity
BJD11_17010	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BJD11_17015	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD11_17055	COG0322	excinuclease ABC activity
BJD11_17065	COG2801	Transposase and inactivated derivatives
BJD11_17085	COG2003	Belongs to the UPF0758 family
BJD11_17090	COG2801	Transposase and inactivated derivatives
BJD11_17095	COG2963	transposase activity
BJD11_17130	COG0314	molybdopterin synthase activity
BJD11_17135	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD11_17140	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD11_17150	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BJD11_17155	COG1234	tRNA 3'-trailer cleavage
BJD11_17160	COG3642	lipopolysaccharide core region biosynthetic process
BJD11_17165	COG0859	PFAM glycosyl transferase family 9
BJD11_17195	COG2963	transposase activity
BJD11_17200	COG2963	transposase activity
BJD11_17235	COG0631	protein serine/threonine phosphatase activity
BJD11_17240	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD11_17245	COG0328	RNA-DNA hybrid ribonuclease activity
BJD11_17255	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD11_17265	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD11_17295	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD11_17300	COG0740	serine-type endopeptidase activity
BJD11_17305	COG0544	peptidyl-prolyl cis-trans isomerase activity
BJD11_17315	COG3852	Histidine kinase
BJD11_17345	COG0473	3-isopropylmalate dehydrogenase activity
BJD11_17360	COG4783	chaperone-mediated protein folding
BJD11_17375	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD11_17385	COG0438	transferase activity, transferring glycosyl groups
BJD11_17390	COG0671	phosphoesterase, PA-phosphatase related
BJD11_17395	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD11_17405	COG3291	Pkd domain containing protein
BJD11_17410	COG2833	Protein of unknown function (DUF455)
BJD11_17435	COG0285	dihydrofolate synthase activity
BJD11_17440	COG0406	alpha-ribazole phosphatase activity
BJD11_17455	COG3039	Transposase
BJD11_17475	COG1063	alcohol dehydrogenase
BJD11_17485	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BJD11_17490	COG4208	sulfate ABC transporter
BJD11_17495	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BJD11_17500	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BJD11_17505	COG0156	8-amino-7-oxononanoate synthase activity
BJD11_17525	COG2885	chlorophyll binding
BJD11_17535	COG1902	pentaerythritol trinitrate reductase activity
BJD11_17535	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD11_17555	COG0625	glutathione transferase activity
BJD11_17560	COG0039	L-malate dehydrogenase activity
BJD11_17565	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD11_17580	COG0154	amidase activity
BJD11_17590	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BJD11_17610	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BJD11_17615	COG0203	ribosomal protein L17
BJD11_17620	COG0202	RNA polymerase activity
BJD11_17625	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BJD11_17630	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BJD11_17635	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BJD11_17640	COG0201	protein transport
BJD11_17645	COG0200	Binds to the 23S rRNA
BJD11_17650	COG1841	ribosomal large subunit assembly
BJD11_17655	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BJD11_17660	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BJD11_17665	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BJD11_17670	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BJD11_17675	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BJD11_17680	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BJD11_17685	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BJD11_17690	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BJD11_17695	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD11_17700	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD11_17705	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD11_17710	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BJD11_17715	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BJD11_17720	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BJD11_17725	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD11_17730	COG0089	rRNA binding
BJD11_17735	COG0088	Forms part of the polypeptide exit tunnel
BJD11_17740	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD11_17745	COG0051	transcription antitermination factor activity, RNA binding
BJD11_17755	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD11_17760	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD11_17765	COG0049	tRNA binding
BJD11_17770	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BJD11_17775	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD11_17780	COG0085	RNA polymerase activity
BJD11_17785	COG0222	ribosome binding
BJD11_17790	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD11_17795	COG0081	regulation of translation
BJD11_17800	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BJD11_17805	COG0250	Participates in transcription elongation, termination and antitermination
BJD11_17810	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD11_17820	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD11_17840	COG0012	GTP binding
BJD11_17845	COG0193	aminoacyl-tRNA hydrolase activity
BJD11_17850	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD11_17855	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD11_17865	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD11_17870	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BJD11_17880	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BJD11_17885	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BJD11_17900	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD11_17915	COG1254	Belongs to the acylphosphatase family
BJD11_17920	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD11_17925	COG1295	ribonuclease BN
BJD11_17950	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BJD11_17955	COG1404	Belongs to the peptidase S8 family
BJD11_17960	COG1404	Belongs to the peptidase S8 family
BJD11_17965	COG1404	Belongs to the peptidase S8 family
BJD11_17970	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD11_17985	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD11_17990	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD11_18010	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD11_18030	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD11_18030	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD11_18050	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD11_18060	COG3634	alkyl hydroperoxide reductase activity
BJD11_18065	COG0583	DNA-binding transcription factor activity
BJD11_18075	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD11_18080	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD11_18090	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD11_18100	COG2197	response regulator
BJD11_18110	COG0745	RESPONSE REGULATOR receiver
BJD11_18110	COG3706	GGDEF domain
BJD11_18125	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD11_18135	COG0697	spore germination
BJD11_18165	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
BJD11_18175	COG3386	PFAM SMP-30 Gluconolaconase
BJD11_18195	COG1024	Enoyl-CoA hydratase
BJD11_18205	COG0318	PFAM AMP-dependent synthetase and ligase
BJD11_18210	COG0583	DNA-binding transcription factor activity
BJD11_18215	COG3384	dioxygenase
BJD11_18245	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD11_18250	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD11_18265	COG2096	Adenosyltransferase
BJD11_18270	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD11_18275	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BJD11_18280	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD11_18285	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD11_18290	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD11_18295	COG2967	ApaG domain
BJD11_18300	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD11_18315	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BJD11_18320	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BJD11_18340	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD11_18350	COG0642	Histidine kinase
BJD11_18365	COG4181	ATPase activity
BJD11_18375	COG2175	clavaminate synthase activity
BJD11_18385	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BJD11_18390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD11_18410	COG4771	TonB-dependent receptor
BJD11_18420	COG0667	Aldo Keto reductase
BJD11_18430	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD11_18435	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD11_18445	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD11_18450	COG4106	trans-aconitate 2-methyltransferase activity
BJD11_18460	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD11_18500	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD11_18510	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BJD11_18515	COG2226	methyltransferase
BJD11_18570	COG0604	alcohol dehydrogenase
BJD11_18570	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_18570	COG3321	synthase
BJD11_18585	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD11_18595	COG0494	nUDIX hydrolase
BJD11_18600	COG0653	protein targeting
BJD11_18605	COG0739	heme binding
BJD11_18615	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BJD11_18630	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD11_18635	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD11_18640	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD11_18645	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BJD11_18655	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD11_18660	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD11_18665	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BJD11_18680	COG3116	cell division
BJD11_18685	COG0275	rRNA processing
BJD11_18690	COG2001	Belongs to the MraZ family
BJD11_18725	COG0792	nuclease activity
BJD11_18730	COG1988	membrane-bound metal-dependent
BJD11_18735	COG0277	FAD linked oxidase domain protein
BJD11_18745	COG0745	RESPONSE REGULATOR receiver
BJD11_18750	COG2205	protein histidine kinase activity
BJD11_18760	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BJD11_18765	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BJD11_18790	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD11_18795	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD11_18800	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BJD11_18820	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD11_18820	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD11_18830	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD11_18840	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD11_18850	COG0488	(ABC) transporter
BJD11_18860	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BJD11_18865	COG3791	Glutathione-dependent formaldehyde-activating
BJD11_18890	COG0745	RESPONSE REGULATOR receiver
BJD11_18895	COG2205	protein histidine kinase activity
BJD11_18905	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD11_18935	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD11_18940	COG1012	belongs to the aldehyde dehydrogenase family
BJD11_18945	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD11_18950	COG0617	tRNA 3'-terminal CCA addition
BJD11_18965	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD11_18970	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD11_18975	COG1609	Transcriptional regulator
BJD11_19010	COG4795	General secretion pathway protein
BJD11_19030	COG1459	type II secretion system
BJD11_19085	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD11_19090	COG4191	Histidine kinase
BJD11_19095	COG0784	Response regulator, receiver
BJD11_19100	COG4251	negative regulation of phosphorylation
BJD11_19105	COG2823	Periplasmic or secreted lipoprotein
BJD11_19110	COG0673	inositol 2-dehydrogenase activity
BJD11_19115	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BJD11_19150	COG1056	cytidyltransferase-related domain
BJD11_19150	COG1051	belongs to the nudix hydrolase family
BJD11_19160	COG0583	DNA-binding transcription factor activity
BJD11_19175	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD11_19180	COG0321	lipoyl(octanoyl) transferase activity
BJD11_19185	COG2921	Belongs to the UPF0250 family
BJD11_19195	COG1686	Belongs to the peptidase S11 family
BJD11_19205	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD11_19210	COG2951	lytic endotransglycosylase activity
BJD11_19220	COG0772	Belongs to the SEDS family
BJD11_19235	COG1792	Involved in formation and maintenance of cell shape
BJD11_19240	COG1077	Cell shape determining protein MreB Mrl
BJD11_19250	COG3284	Transcriptional regulator
BJD11_19260	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BJD11_19295	COG2801	Transposase and inactivated derivatives
BJD11_19320	COG0308	aminopeptidase N
BJD11_19325	COG3300	MHYT domain
BJD11_19325	COG5001	Diguanylate cyclase
BJD11_19355	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD11_19360	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD11_19365	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD11_19375	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD11_19385	COG2832	Protein of unknown function (DUF454)
BJD11_19400	COG1505	serine-type exopeptidase activity
BJD11_19440	COG0181	hydroxymethylbilane synthase activity
BJD11_19450	COG3275	phosphorelay sensor kinase activity
BJD11_19460	COG2943	transferase activity, transferring hexosyl groups
BJD11_19475	COG3706	GGDEF domain
BJD11_19480	COG0659	secondary active sulfate transmembrane transporter activity
BJD11_19485	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD11_19485	COG5297	Belongs to the glycosyl hydrolase family 6
BJD11_19490	COG0840	transmembrane signaling receptor activity
BJD11_19525	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD11_19535	COG0598	Magnesium transport protein CorA
BJD11_19545	COG1113	amino acid transport
BJD11_19565	COG0697	spore germination
BJD11_19590	COG1959	2 iron, 2 sulfur cluster binding
BJD11_19595	COG3706	GGDEF domain
BJD11_19650	COG0435	Glutathione S-transferase
BJD11_19660	COG4221	oxidoreductase activity
BJD11_19705	COG4221	oxidoreductase activity
BJD11_19735	COG2963	transposase activity
BJD11_19765	COG0464	growth
BJD11_19805	COG0546	phosphoglycolate phosphatase activity
BJD11_19810	COG1802	Transcriptional regulator
BJD11_19820	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BJD11_19825	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BJD11_19845	COG3052	prosthetic group binding
BJD11_19880	COG2353	YceI-like domain
BJD11_19885	COG0778	Nitroreductase
BJD11_19935	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BJD11_19945	COG3386	PFAM SMP-30 Gluconolaconase
BJD11_19970	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD11_19985	COG0459	protein refolding
BJD11_19990	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BJD11_20000	COG2356	endonuclease I
BJD11_20010	COG1324	tolerance protein
BJD11_20020	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD11_20025	COG0511	ligase activity, forming carbon-carbon bonds
BJD11_20035	COG0439	Biotin carboxylase
BJD11_20055	COG2264	protein methyltransferase activity
BJD11_20085	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD11_20095	COG4589	Belongs to the CDS family
BJD11_20120	COG2453	phosphatase
BJD11_20120	COG0671	phosphoesterase, PA-phosphatase related
BJD11_20125	COG2267	carboxylic ester hydrolase activity
BJD11_20130	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD11_20135	COG0138	bifunctional purine biosynthesis protein purh
BJD11_20145	COG0151	Belongs to the GarS family
BJD11_20150	COG1289	transmembrane transporter activity
BJD11_20155	COG2814	Major facilitator Superfamily
BJD11_20180	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD11_20200	COG0316	Belongs to the HesB IscA family
BJD11_20240	COG1051	belongs to the nudix hydrolase family
BJD11_20255	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BJD11_20260	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BJD11_20265	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BJD11_20275	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BJD11_20280	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD11_20290	COG0134	indole-3-glycerol-phosphate synthase activity
BJD11_20295	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD11_20330	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BJD11_20350	COG1597	lipid kinase activity
BJD11_20355	COG0456	acetyltransferase
BJD11_20365	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BJD11_20370	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BJD11_20390	COG3179	chitinase
BJD11_20410	COG2111	Na H antiporter
BJD11_20410	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD11_20415	COG1006	Multisubunit Na H antiporter MnhC subunit
BJD11_20420	COG0651	ATP synthesis coupled electron transport
BJD11_20425	COG1863	multisubunit Na H antiporter MnhE subunit
BJD11_20430	COG2212	antiporter activity
BJD11_20435	COG1320	monovalent cation:proton antiporter activity
BJD11_20455	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD11_20460	COG2852	Protein conserved in bacteria
BJD11_20480	COG3104	oligopeptide transport
BJD11_20495	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BJD11_20510	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD11_20520	COG0513	Belongs to the DEAD box helicase family
BJD11_20535	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_20540	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD11_20575	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_20580	COG0702	epimerase
BJD11_20605	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD11_20610	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD11_20615	COG0297	glycogen (starch) synthase activity
BJD11_20620	COG0745	RESPONSE REGULATOR receiver
BJD11_20620	COG3706	GGDEF domain
BJD11_20625	COG2354	Protein conserved in bacteria
BJD11_20635	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD11_20645	COG1368	sulfuric ester hydrolase activity
BJD11_20650	COG1511	domain protein
BJD11_20650	COG3264	Mechanosensitive ion channel
BJD11_20680	COG2963	transposase activity
BJD11_20740	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD11_20845	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD11_20850	COG1040	competence protein
BJD11_20855	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD11_20860	COG0156	8-amino-7-oxononanoate synthase activity
BJD11_20870	COG2267	carboxylic ester hydrolase activity
BJD11_20875	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_20900	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BJD11_20910	COG0445	tRNA wobble uridine modification
BJD11_20930	COG1414	Transcriptional regulator
BJD11_20945	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD11_20950	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD11_20960	COG3485	protocatechuate 3,4-dioxygenase
BJD11_20965	COG3485	protocatechuate 3,4-dioxygenase
BJD11_20975	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BJD11_20980	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD11_21005	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD11_21010	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD11_21065	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD11_21085	COG0129	dihydroxy-acid dehydratase activity
BJD11_21105	COG2801	Transposase and inactivated derivatives
BJD11_21130	COG1733	regulation of RNA biosynthetic process
BJD11_21135	COG0702	epimerase
BJD11_21155	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BJD11_21170	COG0583	DNA-binding transcription factor activity
BJD11_21175	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD11_21190	COG1538	Outer membrane efflux protein
BJD11_21200	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_21205	COG2205	protein histidine kinase activity
BJD11_21210	COG0745	RESPONSE REGULATOR receiver
BJD11_21230	COG1902	pentaerythritol trinitrate reductase activity
BJD11_21235	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD11_21240	COG2267	carboxylic ester hydrolase activity
BJD11_21250	COG2814	Major facilitator Superfamily
BJD11_21255	COG0583	DNA-binding transcription factor activity
BJD11_21270	COG0084	hydrolase, TatD family'
BJD11_21295	COG2252	PERMEase
BJD11_21335	COG0583	DNA-binding transcription factor activity
BJD11_21350	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD11_21370	COG2072	flavoprotein involved in K transport
BJD11_21375	COG2351	hydroxyisourate hydrolase activity
BJD11_21380	COG4807	Protein conserved in bacteria
BJD11_21390	COG1643	Atp-dependent helicase
BJD11_21400	COG1187	pseudouridine synthase activity
BJD11_21415	COG2130	NADP-dependent
BJD11_21435	COG1764	response to oxidative stress
BJD11_21440	COG1846	Transcriptional regulator
BJD11_21445	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD11_21455	COG0697	spore germination
BJD11_21470	COG0523	cobalamin synthesis protein
BJD11_21535	COG1960	acyl-CoA dehydrogenase activity
BJD11_21540	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD11_21570	COG3706	GGDEF domain
BJD11_21575	COG2224	Isocitrate lyase
BJD11_21580	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD11_21585	COG0583	DNA-binding transcription factor activity
BJD11_21590	COG0475	glutathione-regulated potassium exporter activity
BJD11_21625	COG0339	signal peptide processing
BJD11_21630	COG1446	asparaginase
BJD11_21650	COG0564	pseudouridine synthase activity
BJD11_21660	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD11_21675	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD11_21685	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD11_21690	COG0318	PFAM AMP-dependent synthetase and ligase
BJD11_21700	COG0596	Alpha beta hydrolase
BJD11_21705	COG3177	Filamentation induced by cAMP protein fic
BJD11_21710	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD11_21725	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD11_21750	COG4191	Histidine kinase
BJD11_21755	COG0028	Belongs to the TPP enzyme family
BJD11_21805	COG2963	transposase activity
BJD11_21895	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD11_21900	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD11_21905	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD11_21940	COG0183	Belongs to the thiolase family
BJD11_21950	COG0346	lactoylglutathione lyase activity
BJD11_21955	COG2032	superoxide dismutase activity
BJD11_21960	COG2032	superoxide dismutase activity
BJD11_21965	COG2204	response regulator
BJD11_21970	COG3852	Histidine kinase
BJD11_21975	COG0004	ammonium transporteR
BJD11_21980	COG0347	Belongs to the P(II) protein family
BJD11_21985	COG0174	glutamine synthetase
BJD11_21995	COG1968	undecaprenyl-diphosphatase activity
BJD11_22040	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD11_22050	COG2062	phosphohistidine phosphatase, SixA
BJD11_22055	COG0489	protein tyrosine kinase activity
BJD11_22090	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD11_22105	COG1125	glycine betaine transport
BJD11_22120	COG1119	ATPase activity
BJD11_22130	COG1473	amidohydrolase
BJD11_22145	COG1522	sequence-specific DNA binding
BJD11_22150	COG3186	Phenylalanine-4-hydroxylase
BJD11_22160	COG2755	lipolytic protein G-D-S-L family
BJD11_22170	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_22175	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BJD11_22180	COG1609	Transcriptional regulator
BJD11_22185	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD11_22200	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD11_22210	COG0657	acetylesterase activity
BJD11_22210	COG2755	lipolytic protein G-D-S-L family
BJD11_22215	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD11_22230	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD11_22235	COG0366	Alpha amylase catalytic
BJD11_22240	COG0366	Alpha amylase catalytic
BJD11_22300	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD11_22310	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD11_22315	COG3710	Transcriptional regulator
BJD11_22335	COG2197	response regulator
BJD11_22340	COG4585	Histidine kinase
BJD11_22345	COG1755	Isoprenylcysteine carboxyl methyltransferase
BJD11_22360	COG1304	FMN binding
BJD11_22385	COG1012	belongs to the aldehyde dehydrogenase family
BJD11_22400	COG4772	TonB-dependent receptor
BJD11_22425	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD11_22475	COG0714	Associated with various cellular activities
BJD11_22515	COG0477	Major facilitator Superfamily
BJD11_22525	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD11_22575	COG3237	CsbD-like
BJD11_22605	COG2963	transposase activity
BJD11_22615	COG0515	serine threonine protein kinase
BJD11_22615	COG2815	serine threonine protein kinase
BJD11_22635	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_22640	COG0300	oxidoreductase activity
BJD11_22660	COG1272	protein, Hemolysin III
BJD11_22665	COG1205	dead DEAH box helicase
BJD11_22665	COG1111	helicase
BJD11_22760	COG0070	glutamate synthase
BJD11_22760	COG0069	glutamate synthase activity
BJD11_22760	COG0067	glutamate synthase
BJD11_22765	COG0493	'glutamate synthase
BJD11_22775	COG1064	alcohol dehydrogenase
BJD11_22785	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD11_22795	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD11_22800	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD11_22810	COG2234	aminopeptidase activity
BJD11_22820	COG4942	peptidase
BJD11_22825	COG0793	Belongs to the peptidase S41A family
BJD11_22830	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD11_22870	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD11_22880	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD11_22920	COG0501	Belongs to the peptidase M48B family
BJD11_22930	COG0187	DNA topoisomerase II activity
BJD11_22935	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD11_22945	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BJD11_22955	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BJD11_22960	COG0594	ribonuclease P activity
BJD11_22965	COG0706	membrane insertase activity
BJD11_22970	COG0726	polysaccharide deacetylase
BJD11_22975	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD11_22995	COG0584	glycerophosphoryl diester phosphodiesterase
BJD11_23010	COG0861	Integral membrane protein TerC family
BJD11_23015	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD11_23030	COG2271	Major facilitator Superfamily
BJD11_23035	COG1929	Belongs to the glycerate kinase type-1 family
BJD11_23040	COG3835	regulator
BJD11_23045	COG3706	GGDEF domain
BJD11_23055	COG4206	TonB-dependent receptor
BJD11_23060	COG3537	Alpha-1,2-mannosidase
BJD11_23065	COG0531	amino acid
BJD11_23090	COG0583	DNA-binding transcription factor activity
BJD11_23095	COG0604	alcohol dehydrogenase
BJD11_23100	COG1322	Protein conserved in bacteria
BJD11_23110	COG0386	Belongs to the glutathione peroxidase family
BJD11_23120	COG2853	Lipoprotein
BJD11_23135	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD11_23140	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD11_23145	COG1127	ABC transporter
BJD11_23180	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD11_23190	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BJD11_23245	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_23255	COG1309	transcriptional regulator
BJD11_23285	COG2963	transposase activity
BJD11_23330	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD11_23350	COG0477	Major facilitator Superfamily
BJD11_23355	COG1289	transmembrane transporter activity
BJD11_23365	COG1566	PFAM secretion protein HlyD family protein
BJD11_23380	COG0302	gtp cyclohydrolase
BJD11_23400	COG0730	response to heat
BJD11_23405	COG3012	SEC-C Motif Domain Protein
BJD11_23415	COG0676	glucose-6-phosphate 1-epimerase activity
BJD11_23435	COG3135	benzoate transporter
BJD11_23465	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD11_23475	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BJD11_23485	COG1435	thymidine kinase activity
BJD11_23490	COG0210	DNA helicase
BJD11_23505	COG3132	Protein of unknown function, DUF480
BJD11_23515	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BJD11_23520	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD11_23555	COG2937	Belongs to the GPAT DAPAT family
BJD11_23565	COG0604	alcohol dehydrogenase
BJD11_23565	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_23565	COG3321	synthase
BJD11_23600	COG2211	Major facilitator Superfamily
BJD11_23615	COG3693	PFAM glycoside hydrolase, family 10
BJD11_23625	COG3693	PFAM glycoside hydrolase, family 10
BJD11_23630	COG1904	glucuronate isomerase
BJD11_23635	COG3250	beta-galactosidase activity
BJD11_23645	COG3386	PFAM SMP-30 Gluconolaconase
BJD11_23670	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD11_23720	COG0246	Mannitol dehydrogenase
BJD11_23725	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD11_23735	COG4948	Mandelate Racemase Muconate Lactonizing
BJD11_23745	COG3661	Belongs to the glycosyl hydrolase 67 family
BJD11_23755	COG2115	Belongs to the xylose isomerase family
BJD11_23760	COG0037	tRNA processing
BJD11_23765	COG2974	May be involved in recombination
BJD11_23785	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD11_23795	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD11_23800	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD11_23805	COG0805	protein transport
BJD11_23815	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD11_23815	COG0519	Catalyzes the synthesis of GMP from XMP
BJD11_23830	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD11_23835	COG0752	glycyl-tRNA synthetase alpha subunit
BJD11_23845	COG0457	Tetratricopeptide repeat
BJD11_23860	COG0729	surface antigen
BJD11_23865	COG2911	Protein conserved in bacteria
BJD11_23890	COG3265	gluconokinase activity
BJD11_23895	COG2211	Major facilitator Superfamily
BJD11_23900	COG3459	Glycosyltransferase 36 associated
BJD11_23915	COG2205	protein histidine kinase activity
BJD11_23920	COG1971	Probably functions as a manganese efflux pump
BJD11_23930	COG1414	Transcriptional regulator
BJD11_23935	COG0738	Major facilitator superfamily
BJD11_23940	COG3254	rhamnose metabolic process
BJD11_23945	COG4948	Mandelate Racemase Muconate Lactonizing
BJD11_23955	COG0179	Fumarylacetoacetate (FAA) hydrolase
BJD11_23960	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_23980	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD11_24015	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD11_24025	COG3162	membrane
BJD11_24030	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD11_24040	COG0708	Exodeoxyribonuclease III
BJD11_24060	COG2091	lysine biosynthetic process via aminoadipic acid
BJD11_24070	COG3540	Alkaline phosphatase
BJD11_24075	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD11_24095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_24110	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BJD11_24115	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BJD11_24120	COG2159	amidohydrolase
BJD11_24135	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD11_24140	COG0583	DNA-binding transcription factor activity
BJD11_24145	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD11_24160	COG0210	DNA helicase
BJD11_24315	COG3501	Rhs element vgr protein
BJD11_24330	COG0583	DNA-binding transcription factor activity
BJD11_24335	COG0667	Aldo Keto reductase
BJD11_24360	COG0631	protein serine/threonine phosphatase activity
BJD11_24365	COG0515	serine threonine protein kinase
BJD11_24405	COG0408	coproporphyrinogen oxidase activity
BJD11_24450	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD11_24465	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD11_24505	COG1028	Short-chain dehydrogenase reductase Sdr
BJD11_24525	COG0463	Glycosyl transferase, family 2
BJD11_24535	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD11_24540	COG3100	YcgL domain-containing protein
BJD11_24550	COG3387	PFAM Glycoside hydrolase 15-related
BJD11_24555	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD11_24565	COG2963	transposase activity
BJD11_24595	COG2239	Acts as a magnesium transporter
BJD11_24600	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD11_24600	COG1042	CoA-binding domain protein
BJD11_24600	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD11_24615	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD11_24620	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD11_24625	COG0716	FMN binding
BJD11_24650	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD11_24655	COG0842	Transport permease protein
BJD11_24660	COG1131	(ABC) transporter
BJD11_24665	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD11_24690	COG1476	TRANSCRIPTIONal
BJD11_24700	COG4555	ABC transporter
BJD11_24735	COG0625	glutathione transferase activity
BJD11_24785	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD11_24800	COG1199	ATP-dependent helicase activity
BJD11_24835	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD11_24845	COG0745	RESPONSE REGULATOR receiver
BJD11_24850	COG2205	protein histidine kinase activity
BJD11_24880	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
BJD11_24880	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
BJD11_24885	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BJD11_24900	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD11_24945	COG3237	CsbD-like
BJD11_24950	COG0180	Tryptophanyl-tRNA synthetase
BJD11_24955	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD11_24970	COG0697	spore germination
BJD11_24995	COG1136	(ABC) transporter
BJD11_25000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD11_25005	COG4585	Histidine kinase
BJD11_25010	COG2197	response regulator
BJD11_25025	COG0753	catalase activity
BJD11_25040	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD11_25045	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD11_25050	COG0628	permease
BJD11_25070	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain