BJD11_01110	PWY-4202	arsenate detoxification I (glutaredoxin)
BJD11_01110	PWY-4621	arsenate detoxification II (glutaredoxin)
BJD11_02395	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
BJD11_02425	PWY-40	putrescine biosynthesis I
BJD11_02425	PWY-43	putrescine biosynthesis II
BJD11_02425	PWY-6305	putrescine biosynthesis IV
BJD11_02425	PWY-6834	spermidine biosynthesis III
BJD11_02435	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_02435	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_02435	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_02435	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_02475	PWY-7851	BJD11_02475
BJD11_02485	PWY-6749	CMP-legionaminate biosynthesis I
BJD11_02535	PWY-5686	UMP biosynthesis
BJD11_02535	PWY-7790	BJD11_02535
BJD11_02535	PWY-7791	BJD11_02535
BJD11_02555	PWY-7883	BJD11_02555
BJD11_02595	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
BJD11_02595	PWY-6853	ethylene biosynthesis II (microbes)
BJD11_02595	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BJD11_02610	PWY-3781	aerobic respiration I (cytochrome c)
BJD11_02610	PWY-4521	arsenite oxidation I (respiratory)
BJD11_02610	PWY-6692	Fe(II) oxidation
BJD11_02610	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BJD11_02690	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BJD11_02690	PWY-6148	tetrahydromethanopterin biosynthesis
BJD11_02690	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
BJD11_02690	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BJD11_02745	PWY-6454	vancomycin resistance I
BJD11_02745	PWY-6455	vancomycin resistance II
BJD11_02815	PWY-6700	queuosine biosynthesis
BJD11_02830	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_02830	PWY-6549	L-glutamine biosynthesis III
BJD11_02830	PWY-6728	methylaspartate cycle
BJD11_02830	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_02830	PWY-7124	ethylene biosynthesis V (engineered)
BJD11_02830	PWY-7254	TCA cycle VII (acetate-producers)
BJD11_02830	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BJD11_02855	PWY-7980	BJD11_02855
BJD11_03055	PWY-6168	flavin biosynthesis III (fungi)
BJD11_03055	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BJD11_03055	PWY-7991	BJD11_03055
BJD11_03165	PWY-7799	BJD11_03165
BJD11_03165	PWY-7800	BJD11_03165
BJD11_03335	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
BJD11_03335	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
BJD11_03335	PWY-7622	UDP-galactofuranose biosynthesis
BJD11_03345	PWY-3821	galactose degradation III
BJD11_03345	PWY-6317	galactose degradation I (Leloir pathway)
BJD11_03345	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
BJD11_03345	PWY-6527	stachyose degradation
BJD11_03345	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
BJD11_03345	PWY-7344	UDP-D-galactose biosynthesis
BJD11_03595	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BJD11_03780	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
BJD11_03780	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BJD11_03820	PWY-7980	BJD11_03820
BJD11_03830	PWY-7980	BJD11_03830
BJD11_03840	PWY-3461	L-tyrosine biosynthesis II
BJD11_03840	PWY-3462	L-phenylalanine biosynthesis II
BJD11_03840	PWY-6120	L-tyrosine biosynthesis III
BJD11_03840	PWY-6627	salinosporamide A biosynthesis
BJD11_03840	PWY-7626	bacilysin biosynthesis
BJD11_03850	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BJD11_03890	PWY-6749	CMP-legionaminate biosynthesis I
BJD11_03915	PWY-5386	methylglyoxal degradation I
BJD11_03955	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BJD11_03955	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BJD11_03955	PWY-5989	stearate biosynthesis II (bacteria and plants)
BJD11_03955	PWY-5994	palmitate biosynthesis I (animals and fungi)
BJD11_03955	PWY-6113	superpathway of mycolate biosynthesis
BJD11_03955	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BJD11_03955	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_03955	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BJD11_03955	PWY-7663	gondoate biosynthesis (anaerobic)
BJD11_03955	PWY-7664	oleate biosynthesis IV (anaerobic)
BJD11_03955	PWY-7858	BJD11_03955
BJD11_03955	PWYG-321	mycolate biosynthesis
BJD11_03970	PWY-181	photorespiration
BJD11_03985	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
BJD11_04080	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
BJD11_04080	PWY-5739	GDP-D-perosamine biosynthesis
BJD11_04080	PWY-5740	GDP-L-colitose biosynthesis
BJD11_04080	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
BJD11_04080	PWY-7573	GDP-mycosamine biosynthesis
BJD11_04100	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
BJD11_04100	PWY-7688	BJD11_04100
BJD11_04125	PWY-3221	dTDP-L-rhamnose biosynthesis II
BJD11_04125	PWY-6808	dTDP-D-forosamine biosynthesis
BJD11_04125	PWY-6942	dTDP-D-desosamine biosynthesis
BJD11_04125	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
BJD11_04125	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
BJD11_04125	PWY-6974	dTDP-L-olivose biosynthesis
BJD11_04125	PWY-6976	dTDP-L-mycarose biosynthesis
BJD11_04125	PWY-7104	dTDP-L-megosamine biosynthesis
BJD11_04125	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
BJD11_04125	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
BJD11_04125	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
BJD11_04125	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
BJD11_04125	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
BJD11_04125	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
BJD11_04125	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
BJD11_04125	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
BJD11_04125	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
BJD11_04125	PWY-7688	BJD11_04125
BJD11_04125	PWY-7814	BJD11_04125
BJD11_04130	PWY-3221	dTDP-L-rhamnose biosynthesis II
BJD11_04130	PWY-6808	dTDP-D-forosamine biosynthesis
BJD11_04130	PWY-6942	dTDP-D-desosamine biosynthesis
BJD11_04130	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
BJD11_04130	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
BJD11_04130	PWY-6974	dTDP-L-olivose biosynthesis
BJD11_04130	PWY-6976	dTDP-L-mycarose biosynthesis
BJD11_04130	PWY-7104	dTDP-L-megosamine biosynthesis
BJD11_04130	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
BJD11_04130	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
BJD11_04130	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
BJD11_04130	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
BJD11_04130	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
BJD11_04130	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
BJD11_04130	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
BJD11_04130	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
BJD11_04130	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
BJD11_04130	PWY-7688	BJD11_04130
BJD11_04130	PWY-7814	BJD11_04130
BJD11_04145	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
BJD11_04145	PWY-7820	BJD11_04145
BJD11_04150	PWY-5659	GDP-mannose biosynthesis
BJD11_04150	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
BJD11_04155	PWY-6749	CMP-legionaminate biosynthesis I
BJD11_04225	PWY-5669	phosphatidylethanolamine biosynthesis I
BJD11_04460	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_04485	PWY-6788	cellulose degradation II (fungi)
BJD11_04510	PWY-4202	arsenate detoxification I (glutaredoxin)
BJD11_04510	PWY-4621	arsenate detoxification II (glutaredoxin)
BJD11_04625	PWY-5676	acetyl-CoA fermentation to butanoate II
BJD11_04625	PWY-5741	ethylmalonyl-CoA pathway
BJD11_04625	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BJD11_04625	PWY-7948	BJD11_04625
BJD11_04720	PWY-1281	sulfoacetaldehyde degradation I
BJD11_04720	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BJD11_04720	PWY-5482	pyruvate fermentation to acetate II
BJD11_04720	PWY-5485	pyruvate fermentation to acetate IV
BJD11_04720	PWY-5497	purine nucleobases degradation II (anaerobic)
BJD11_04720	PWY-6637	sulfolactate degradation II
BJD11_04720	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_04755	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
BJD11_04795	PWY-7396	butanol and isobutanol biosynthesis (engineered)
BJD11_04800	PWY-6871	3-methylbutanol biosynthesis
BJD11_04815	PWY-5101	L-isoleucine biosynthesis II
BJD11_04815	PWY-5103	L-isoleucine biosynthesis III
BJD11_04815	PWY-5104	L-isoleucine biosynthesis IV
BJD11_04815	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
BJD11_04815	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
BJD11_04815	PWY-6389	(<i>S</i>)-acetoin biosynthesis
BJD11_04815	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BJD11_04820	PWY-5103	L-isoleucine biosynthesis III
BJD11_04820	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BJD11_04825	PWY-4041	&gamma;-glutamyl cycle
BJD11_04825	PWY-4061	glutathione-mediated detoxification I
BJD11_04825	PWY-5826	hypoglycin biosynthesis
BJD11_04825	PWY-6842	glutathione-mediated detoxification II
BJD11_04825	PWY-7112	4-hydroxy-2-nonenal detoxification
BJD11_04825	PWY-7559	glutathione degradation (DUG pathway - yeast)
BJD11_04845	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
BJD11_04870	PWY-7805	BJD11_04870
BJD11_04870	PWY-7807	BJD11_04870
BJD11_04880	PWY-7805	BJD11_04880
BJD11_04880	PWY-7807	BJD11_04880
BJD11_04965	PWY-1042	glycolysis IV (plant cytosol)
BJD11_04965	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BJD11_04965	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_04965	PWY-7385	1,3-propanediol biosynthesis (engineered)
BJD11_04970	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_04975	PWY-7883	BJD11_04975
BJD11_05060	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BJD11_05075	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
BJD11_05075	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
BJD11_05075	PWY-6897	thiamin salvage II
BJD11_05075	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
BJD11_05075	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
BJD11_05075	PWY-7356	thiamin salvage IV (yeast)
BJD11_05075	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BJD11_05095	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BJD11_05095	PWY-5723	Rubisco shunt
BJD11_05130	PWY-7799	BJD11_05130
BJD11_05130	PWY-7800	BJD11_05130
BJD11_05180	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_05230	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_05230	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_05230	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_05230	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_05295	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BJD11_05295	PWY-5723	Rubisco shunt
BJD11_05295	PWY-6891	thiazole biosynthesis II (Bacillus)
BJD11_05295	PWY-6892	thiazole biosynthesis I (E. coli)
BJD11_05295	PWY-6901	superpathway of glucose and xylose degradation
BJD11_05295	PWY-7560	methylerythritol phosphate pathway II
BJD11_05380	PWY-2582	brassinosteroid biosynthesis II
BJD11_05380	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
BJD11_05380	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
BJD11_05380	PWY-6948	sitosterol degradation to androstenedione
BJD11_05380	PWY-699	brassinosteroid biosynthesis I
BJD11_05380	PWY-7299	progesterone biosynthesis
BJD11_05385	PWY-1042	glycolysis IV (plant cytosol)
BJD11_05385	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_05385	PWY-6901	superpathway of glucose and xylose degradation
BJD11_05385	PWY-7003	glycerol degradation to butanol
BJD11_05410	PWY-1042	glycolysis IV (plant cytosol)
BJD11_05410	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_05410	PWY-6886	1-butanol autotrophic biosynthesis
BJD11_05410	PWY-6901	superpathway of glucose and xylose degradation
BJD11_05410	PWY-7003	glycerol degradation to butanol
BJD11_05420	PWY-1042	glycolysis IV (plant cytosol)
BJD11_05420	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BJD11_05420	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_05420	PWY-5723	Rubisco shunt
BJD11_05420	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_05420	PWY-6886	1-butanol autotrophic biosynthesis
BJD11_05420	PWY-6901	superpathway of glucose and xylose degradation
BJD11_05420	PWY-7003	glycerol degradation to butanol
BJD11_05420	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
BJD11_05420	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BJD11_05425	PWY-1042	glycolysis IV (plant cytosol)
BJD11_05425	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BJD11_05425	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_05425	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_05425	PWY-7385	1,3-propanediol biosynthesis (engineered)
BJD11_05435	PWY-6825	phosphatidylcholine biosynthesis V
BJD11_05440	PWY-6936	seleno-amino acid biosynthesis
BJD11_05445	PWY-5194	siroheme biosynthesis
BJD11_05445	PWY-5196	factor 430 biosynthesis
BJD11_05445	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BJD11_05495	PWY-6683	sulfate reduction III (assimilatory)
BJD11_05500	PWY-6683	sulfate reduction III (assimilatory)
BJD11_05505	PWY-5278	sulfite oxidation III
BJD11_05505	PWY-5340	sulfate activation for sulfonation
BJD11_05505	PWY-6683	sulfate reduction III (assimilatory)
BJD11_05505	PWY-6932	selenate reduction
BJD11_05510	PWY-5278	sulfite oxidation III
BJD11_05510	PWY-5340	sulfate activation for sulfonation
BJD11_05510	PWY-6683	sulfate reduction III (assimilatory)
BJD11_05510	PWY-6932	selenate reduction
BJD11_05590	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_05650	PWY-6891	thiazole biosynthesis II (Bacillus)
BJD11_05650	PWY-6892	thiazole biosynthesis I (E. coli)
BJD11_05985	PWY-7851	BJD11_05985
BJD11_06025	PWY-5392	reductive TCA cycle II
BJD11_06025	PWY-5537	pyruvate fermentation to acetate V
BJD11_06025	PWY-5538	pyruvate fermentation to acetate VI
BJD11_06025	PWY-5690	TCA cycle II (plants and fungi)
BJD11_06025	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_06025	PWY-6728	methylaspartate cycle
BJD11_06025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_06025	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BJD11_06030	PWY-5392	reductive TCA cycle II
BJD11_06030	PWY-5537	pyruvate fermentation to acetate V
BJD11_06030	PWY-5538	pyruvate fermentation to acetate VI
BJD11_06030	PWY-5690	TCA cycle II (plants and fungi)
BJD11_06030	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_06030	PWY-6728	methylaspartate cycle
BJD11_06030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_06030	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BJD11_06045	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_06045	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
BJD11_06045	PWY-7761	BJD11_06045
BJD11_06180	PWY-5443	aminopropanol phosphate biosynthesis I
BJD11_06190	PWY-6269	adenosylcobalamin salvage from cobinamide II
BJD11_06190	PWY-7962	BJD11_06190
BJD11_06190	PWY-7971	BJD11_06190
BJD11_06190	PWY-7972	BJD11_06190
BJD11_06195	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
BJD11_06195	PWY-6269	adenosylcobalamin salvage from cobinamide II
BJD11_06195	PWY-7964	BJD11_06195
BJD11_06195	PWY-7965	BJD11_06195
BJD11_06195	PWY-7966	BJD11_06195
BJD11_06195	PWY-7967	BJD11_06195
BJD11_06195	PWY-7968	BJD11_06195
BJD11_06195	PWY-7969	BJD11_06195
BJD11_06195	PWY-7970	BJD11_06195
BJD11_06205	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
BJD11_06205	PWY-6269	adenosylcobalamin salvage from cobinamide II
BJD11_06205	PWY-7961	BJD11_06205
BJD11_06205	PWY-7963	BJD11_06205
BJD11_06205	PWY-7964	BJD11_06205
BJD11_06205	PWY-7965	BJD11_06205
BJD11_06205	PWY-7966	BJD11_06205
BJD11_06205	PWY-7967	BJD11_06205
BJD11_06205	PWY-7968	BJD11_06205
BJD11_06205	PWY-7969	BJD11_06205
BJD11_06205	PWY-7970	BJD11_06205
BJD11_06205	PWY-7975	BJD11_06205
BJD11_06310	PWY-7782	BJD11_06310
BJD11_06310	PWY-7783	BJD11_06310
BJD11_06420	PWY-6703	preQ<sub>0</sub> biosynthesis
BJD11_06430	PWY-6703	preQ<sub>0</sub> biosynthesis
BJD11_06520	PWY-2722	trehalose degradation IV
BJD11_06520	PWY-2723	trehalose degradation V
BJD11_06520	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BJD11_06520	PWY-5661	GDP-glucose biosynthesis
BJD11_06520	PWY-621	sucrose degradation III (sucrose invertase)
BJD11_06520	PWY-7238	sucrose biosynthesis II
BJD11_06520	PWY-7385	1,3-propanediol biosynthesis (engineered)
BJD11_06550	PWY-6420	pyrroloquinoline quinone biosynthesis
BJD11_06585	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_06585	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_06585	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_06585	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_06740	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_06765	PWY-6902	chitin degradation II
BJD11_06765	PWY-7822	BJD11_06765
BJD11_06765	PWY-7883	BJD11_06765
BJD11_06775	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_06785	PWY-2722	trehalose degradation IV
BJD11_06785	PWY-2723	trehalose degradation V
BJD11_06785	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BJD11_06785	PWY-5661	GDP-glucose biosynthesis
BJD11_06785	PWY-621	sucrose degradation III (sucrose invertase)
BJD11_06785	PWY-7238	sucrose biosynthesis II
BJD11_06785	PWY-7385	1,3-propanediol biosynthesis (engineered)
BJD11_06855	PWY-7094	fatty acid salvage
BJD11_06855	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
BJD11_06885	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_06885	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_06885	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_06885	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_06925	PWY-801	L-homocysteine and L-cysteine interconversion
BJD11_06995	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
BJD11_06995	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
BJD11_06995	PWY-7766	BJD11_06995
BJD11_07005	PWY-6164	3-dehydroquinate biosynthesis I
BJD11_07010	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_07015	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
BJD11_07015	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
BJD11_07170	PWY-7533	gliotoxin biosynthesis
BJD11_07255	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
BJD11_07255	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
BJD11_07270	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_07270	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_07270	PWY-7953	BJD11_07270
BJD11_07295	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BJD11_07295	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
BJD11_07305	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BJD11_07305	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BJD11_07305	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BJD11_07415	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
BJD11_07475	PWY-3341	L-proline biosynthesis III
BJD11_07475	PWY-4981	L-proline biosynthesis II (from arginine)
BJD11_07475	PWY-6344	L-ornithine degradation II (Stickland reaction)
BJD11_07480	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BJD11_07525	PWY-5686	UMP biosynthesis
BJD11_07525	PWY-7790	BJD11_07525
BJD11_07525	PWY-7791	BJD11_07525
BJD11_07550	PWY-2941	L-lysine biosynthesis II
BJD11_07550	PWY-2942	L-lysine biosynthesis III
BJD11_07550	PWY-5097	L-lysine biosynthesis VI
BJD11_07550	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BJD11_07550	PWY-6559	spermidine biosynthesis II
BJD11_07550	PWY-6562	norspermidine biosynthesis
BJD11_07550	PWY-7153	grixazone biosynthesis
BJD11_07550	PWY-7977	BJD11_07550
BJD11_07565	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_07565	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_07705	PWY-1622	formaldehyde assimilation I (serine pathway)
BJD11_07705	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_07830	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BJD11_08090	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_08190	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_08190	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
BJD11_08190	PWY-7761	BJD11_08190
BJD11_08285	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
BJD11_08285	PWY-5491	diethylphosphate degradation
BJD11_08450	PWY-5669	phosphatidylethanolamine biosynthesis I
BJD11_08465	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_08475	PWY-2941	L-lysine biosynthesis II
BJD11_08475	PWY-2942	L-lysine biosynthesis III
BJD11_08475	PWY-5097	L-lysine biosynthesis VI
BJD11_08475	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_08475	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BJD11_08475	PWY-6559	spermidine biosynthesis II
BJD11_08475	PWY-6562	norspermidine biosynthesis
BJD11_08475	PWY-7153	grixazone biosynthesis
BJD11_08475	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_08475	PWY-7977	BJD11_08475
BJD11_08540	PWY-4381	fatty acid biosynthesis initiation I
BJD11_08540	PWY-5743	3-hydroxypropanoate cycle
BJD11_08540	PWY-5744	glyoxylate assimilation
BJD11_08540	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_08540	PWY-6722	candicidin biosynthesis
BJD11_08545	PWY-6749	CMP-legionaminate biosynthesis I
BJD11_08590	PWY-1042	glycolysis IV (plant cytosol)
BJD11_08590	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_08590	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_08590	PWY-7003	glycerol degradation to butanol
BJD11_08720	PWY-5316	nicotine biosynthesis
BJD11_08720	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_08720	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
BJD11_08720	PWY-7342	superpathway of nicotine biosynthesis
BJD11_08730	PWY-6123	inosine-5'-phosphate biosynthesis I
BJD11_08730	PWY-7234	inosine-5'-phosphate biosynthesis III
BJD11_08740	PWY-6854	ethylene biosynthesis III (microbes)
BJD11_08765	PWY-6617	adenosine nucleotides degradation III
BJD11_08765	PWY-7569	arginomycin biosynthesis
BJD11_08765	PWY-7570	blasticidin S biosynthesis
BJD11_08905	PWY-5941	glycogen degradation II (eukaryotic)
BJD11_08905	PWY-6724	starch degradation II
BJD11_08905	PWY-6737	starch degradation V
BJD11_08905	PWY-7238	sucrose biosynthesis II
BJD11_08980	PWY-6655	xanthan biosynthesis
BJD11_08980	PWY-6658	acetan biosynthesis
BJD11_09040	PWY-4381	fatty acid biosynthesis initiation I
BJD11_09055	PWY-5129	sphingolipid biosynthesis (plants)
BJD11_09055	PWY-7836	BJD11_09055
BJD11_09055	PWY-7838	BJD11_09055
BJD11_09055	PWY-7839	BJD11_09055
BJD11_09055	PWY-7841	BJD11_09055
BJD11_09065	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_09065	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_09065	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_09065	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_09070	PWY-6891	thiazole biosynthesis II (Bacillus)
BJD11_09070	PWY-6892	thiazole biosynthesis I (E. coli)
BJD11_09070	PWY-7560	methylerythritol phosphate pathway II
BJD11_09200	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_09310	PWY-7851	BJD11_09310
BJD11_09330	PWY-4041	&gamma;-glutamyl cycle
BJD11_09330	PWY-4061	glutathione-mediated detoxification I
BJD11_09330	PWY-5826	hypoglycin biosynthesis
BJD11_09330	PWY-6842	glutathione-mediated detoxification II
BJD11_09330	PWY-7112	4-hydroxy-2-nonenal detoxification
BJD11_09330	PWY-7559	glutathione degradation (DUG pathway - yeast)
BJD11_09340	PWY-6788	cellulose degradation II (fungi)
BJD11_09345	PWY-7183	pyrimidine nucleobases salvage I
BJD11_09355	PWY-4702	phytate degradation I
BJD11_09385	PWY-6700	queuosine biosynthesis
BJD11_09390	PWY-6700	queuosine biosynthesis
BJD11_09495	PWY-5022	4-aminobutanoate degradation V
BJD11_09495	PWY-6728	methylaspartate cycle
BJD11_09495	PWY-7126	ethylene biosynthesis IV
BJD11_09575	PWY-381	nitrate reduction II (assimilatory)
BJD11_09575	PWY-5675	nitrate reduction V (assimilatory)
BJD11_09575	PWY-6549	L-glutamine biosynthesis III
BJD11_09575	PWY-6963	ammonia assimilation cycle I
BJD11_09575	PWY-6964	ammonia assimilation cycle II
BJD11_09585	PWY-381	nitrate reduction II (assimilatory)
BJD11_09585	PWY-5675	nitrate reduction V (assimilatory)
BJD11_09585	PWY-6549	L-glutamine biosynthesis III
BJD11_09585	PWY-6963	ammonia assimilation cycle I
BJD11_09585	PWY-6964	ammonia assimilation cycle II
BJD11_09705	PWY-3781	aerobic respiration I (cytochrome c)
BJD11_09705	PWY-6692	Fe(II) oxidation
BJD11_09705	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
BJD11_09705	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BJD11_09860	PWY-6700	queuosine biosynthesis
BJD11_09865	PWY-6938	NADH repair
BJD11_09905	PWY-5676	acetyl-CoA fermentation to butanoate II
BJD11_09905	PWY-5741	ethylmalonyl-CoA pathway
BJD11_09905	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BJD11_09905	PWY-7948	BJD11_09905
BJD11_09955	PWY-6605	adenine and adenosine salvage II
BJD11_09955	PWY-6610	adenine and adenosine salvage IV
BJD11_09955	PWY-7805	BJD11_09955
BJD11_09955	PWY-7807	BJD11_09955
BJD11_09980	PWY-6854	ethylene biosynthesis III (microbes)
BJD11_09985	PWY-2301	<i>myo</i>-inositol biosynthesis
BJD11_09985	PWY-4702	phytate degradation I
BJD11_09985	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
BJD11_10025	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
BJD11_10025	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
BJD11_10025	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
BJD11_10025	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
BJD11_10025	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
BJD11_10025	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
BJD11_10025	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
BJD11_10025	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
BJD11_10025	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
BJD11_10025	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
BJD11_10030	PWY-181	photorespiration
BJD11_10110	PWY-5686	UMP biosynthesis
BJD11_10110	PWY-7790	BJD11_10110
BJD11_10110	PWY-7791	BJD11_10110
BJD11_10145	PWY-5686	UMP biosynthesis
BJD11_10145	PWY-7790	BJD11_10145
BJD11_10145	PWY-7791	BJD11_10145
BJD11_10150	PWY-4983	L-citrulline-nitric oxide cycle
BJD11_10150	PWY-4984	urea cycle
BJD11_10150	PWY-5	canavanine biosynthesis
BJD11_10150	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_10150	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_10165	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_10165	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_10175	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_10175	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_10180	PWY-4983	L-citrulline-nitric oxide cycle
BJD11_10180	PWY-4984	urea cycle
BJD11_10180	PWY-5	canavanine biosynthesis
BJD11_10180	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_10180	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_10190	PWY-3341	L-proline biosynthesis III
BJD11_10190	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BJD11_10195	PWY-3341	L-proline biosynthesis III
BJD11_10195	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BJD11_10200	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_10220	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
BJD11_10375	PWY-5941	glycogen degradation II (eukaryotic)
BJD11_10375	PWY-6724	starch degradation II
BJD11_10375	PWY-6737	starch degradation V
BJD11_10375	PWY-7238	sucrose biosynthesis II
BJD11_10400	PWY-43	putrescine biosynthesis II
BJD11_10415	PWY-7205	CMP phosphorylation
BJD11_10440	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_10440	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_10440	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_10440	PWY-6938	NADH repair
BJD11_10450	PWY-3801	sucrose degradation II (sucrose synthase)
BJD11_10450	PWY-6527	stachyose degradation
BJD11_10450	PWY-7238	sucrose biosynthesis II
BJD11_10450	PWY-7343	UDP-glucose biosynthesis
BJD11_10450	PWY-7817	BJD11_10450
BJD11_10465	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
BJD11_10465	PWY-2201	folate transformations I
BJD11_10465	PWY-3841	folate transformations II
BJD11_10465	PWY-5030	L-histidine degradation III
BJD11_10465	PWY-5497	purine nucleobases degradation II (anaerobic)
BJD11_10465	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
BJD11_10465	PWY-7909	BJD11_10465
BJD11_10470	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
BJD11_10470	PWY-6596	adenosine nucleotides degradation I
BJD11_10470	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_10475	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_10810	PWY-7158	L-phenylalanine degradation V
BJD11_11090	PWY-5269	cardiolipin biosynthesis II
BJD11_11090	PWY-5668	cardiolipin biosynthesis I
BJD11_11090	PWY-7817	BJD11_11090
BJD11_11110	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
BJD11_11165	PWY-3781	aerobic respiration I (cytochrome c)
BJD11_11165	PWY-4302	aerobic respiration III (alternative oxidase pathway)
BJD11_11165	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BJD11_11165	PWY-5690	TCA cycle II (plants and fungi)
BJD11_11165	PWY-6728	methylaspartate cycle
BJD11_11165	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_11165	PWY-7254	TCA cycle VII (acetate-producers)
BJD11_11165	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BJD11_11175	PWY-3781	aerobic respiration I (cytochrome c)
BJD11_11175	PWY-4302	aerobic respiration III (alternative oxidase pathway)
BJD11_11175	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BJD11_11175	PWY-5690	TCA cycle II (plants and fungi)
BJD11_11175	PWY-6728	methylaspartate cycle
BJD11_11175	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_11175	PWY-7254	TCA cycle VII (acetate-producers)
BJD11_11175	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BJD11_11205	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BJD11_11210	PWY-2722	trehalose degradation IV
BJD11_11210	PWY-2723	trehalose degradation V
BJD11_11210	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BJD11_11210	PWY-5661	GDP-glucose biosynthesis
BJD11_11210	PWY-621	sucrose degradation III (sucrose invertase)
BJD11_11210	PWY-7238	sucrose biosynthesis II
BJD11_11210	PWY-7385	1,3-propanediol biosynthesis (engineered)
BJD11_11215	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BJD11_11215	PWY-6855	chitin degradation I (archaea)
BJD11_11215	PWY-6906	chitin derivatives degradation
BJD11_11220	PWY-5101	L-isoleucine biosynthesis II
BJD11_11220	PWY-5103	L-isoleucine biosynthesis III
BJD11_11220	PWY-5104	L-isoleucine biosynthesis IV
BJD11_11220	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BJD11_11225	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BJD11_11225	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
BJD11_11225	PWY-7242	D-fructuronate degradation
BJD11_11225	PWY-7310	D-glucosaminate degradation
BJD11_11225	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
BJD11_11375	PWY-6502	oxidized GTP and dGTP detoxification
BJD11_11390	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_11390	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_11665	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
BJD11_11665	PWY-7494	choline degradation IV
BJD11_11945	PWY-5194	siroheme biosynthesis
BJD11_11945	PWY-5196	factor 430 biosynthesis
BJD11_11945	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BJD11_11960	PWY-6683	sulfate reduction III (assimilatory)
BJD11_11980	PWY-5194	siroheme biosynthesis
BJD11_11980	PWY-5196	factor 430 biosynthesis
BJD11_11980	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BJD11_12005	PWY-5964	guanylyl molybdenum cofactor biosynthesis
BJD11_12005	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
BJD11_12010	PWY-6823	molybdenum cofactor biosynthesis
BJD11_12065	PWY-6823	molybdenum cofactor biosynthesis
BJD11_12100	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BJD11_12100	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
BJD11_12100	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_12100	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_12100	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
BJD11_12100	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BJD11_12100	PWY-7205	CMP phosphorylation
BJD11_12100	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BJD11_12100	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_12100	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_12100	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_12100	PWY-7224	purine deoxyribonucleosides salvage
BJD11_12100	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_12100	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BJD11_12110	PWY-1361	benzoyl-CoA degradation I (aerobic)
BJD11_12110	PWY-5109	2-methylbutanoate biosynthesis
BJD11_12110	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
BJD11_12110	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
BJD11_12110	PWY-5177	glutaryl-CoA degradation
BJD11_12110	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_12110	PWY-6435	4-hydroxybenzoate biosynthesis V
BJD11_12110	PWY-6583	pyruvate fermentation to butanol I
BJD11_12110	PWY-6863	pyruvate fermentation to hexanol
BJD11_12110	PWY-6883	pyruvate fermentation to butanol II
BJD11_12110	PWY-6944	androstenedione degradation
BJD11_12110	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
BJD11_12110	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
BJD11_12110	PWY-7007	methyl ketone biosynthesis
BJD11_12110	PWY-7046	4-coumarate degradation (anaerobic)
BJD11_12110	PWY-7094	fatty acid salvage
BJD11_12110	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BJD11_12110	PWY-735	jasmonic acid biosynthesis
BJD11_12110	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
BJD11_12110	PWY-7606	docosahexaenoate biosynthesis III (mammals)
BJD11_12110	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
BJD11_12110	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
BJD11_12110	PWY-7726	BJD11_12110
BJD11_12110	PWY-7778	BJD11_12110
BJD11_12110	PWY-7779	BJD11_12110
BJD11_12170	PWY-7801	BJD11_12170
BJD11_12195	PWY-7887	BJD11_12195
BJD11_12195	PWY-7892	BJD11_12195
BJD11_12370	PWY-4381	fatty acid biosynthesis initiation I
BJD11_12410	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
BJD11_12445	PWY-7980	BJD11_12445
BJD11_12790	PWY-5747	2-methylcitrate cycle II
BJD11_12860	PWY-7805	BJD11_12860
BJD11_12860	PWY-7807	BJD11_12860
BJD11_12875	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_12875	PWY-5686	UMP biosynthesis
BJD11_12875	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_12875	PWY-7790	BJD11_12875
BJD11_12875	PWY-7791	BJD11_12875
BJD11_12885	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BJD11_12885	PWY-5686	UMP biosynthesis
BJD11_12885	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BJD11_12885	PWY-7790	BJD11_12885
BJD11_12885	PWY-7791	BJD11_12885
BJD11_12890	PWY-2941	L-lysine biosynthesis II
BJD11_12890	PWY-2942	L-lysine biosynthesis III
BJD11_12890	PWY-5097	L-lysine biosynthesis VI
BJD11_12995	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BJD11_13000	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BJD11_13000	PWY-5389	3-methylthiopropanoate biosynthesis
BJD11_13090	PWY-702	L-methionine biosynthesis II
BJD11_13095	PWY-2941	L-lysine biosynthesis II
BJD11_13095	PWY-2942	L-lysine biosynthesis III
BJD11_13095	PWY-5097	L-lysine biosynthesis VI
BJD11_13095	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BJD11_13095	PWY-6559	spermidine biosynthesis II
BJD11_13095	PWY-6562	norspermidine biosynthesis
BJD11_13095	PWY-7153	grixazone biosynthesis
BJD11_13095	PWY-7977	BJD11_13095
BJD11_13325	PWY-5686	UMP biosynthesis
BJD11_13330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_13330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_13330	PWY-7953	BJD11_13330
BJD11_13340	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_13340	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_13420	PWY-3801	sucrose degradation II (sucrose synthase)
BJD11_13420	PWY-5054	sorbitol biosynthesis I
BJD11_13420	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
BJD11_13420	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BJD11_13420	PWY-5659	GDP-mannose biosynthesis
BJD11_13420	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_13420	PWY-621	sucrose degradation III (sucrose invertase)
BJD11_13420	PWY-622	starch biosynthesis
BJD11_13420	PWY-6981	chitin biosynthesis
BJD11_13420	PWY-6992	1,5-anhydrofructose degradation
BJD11_13420	PWY-7238	sucrose biosynthesis II
BJD11_13420	PWY-7347	sucrose biosynthesis III
BJD11_13420	PWY-7385	1,3-propanediol biosynthesis (engineered)
BJD11_13425	PWY-5155	&beta;-alanine biosynthesis III
BJD11_13435	PWY-6654	phosphopantothenate biosynthesis III
BJD11_13440	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BJD11_13440	PWY-6148	tetrahydromethanopterin biosynthesis
BJD11_13440	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
BJD11_13440	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BJD11_13440	PWY-7852	BJD11_13440
BJD11_13440	PWY-7853	BJD11_13440
BJD11_13455	PWY-5663	tetrahydrobiopterin biosynthesis I
BJD11_13455	PWY-5664	tetrahydrobiopterin biosynthesis II
BJD11_13455	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BJD11_13455	PWY-6703	preQ<sub>0</sub> biosynthesis
BJD11_13455	PWY-6983	tetrahydrobiopterin biosynthesis III
BJD11_13455	PWY-7442	drosopterin and aurodrosopterin biosynthesis
BJD11_13455	PWY-7852	BJD11_13455
BJD11_13485	PWY-4261	glycerol degradation I
BJD11_13490	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_13500	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_13505	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_13540	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BJD11_13540	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
BJD11_13540	PWY-7242	D-fructuronate degradation
BJD11_13540	PWY-7310	D-glucosaminate degradation
BJD11_13540	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
BJD11_13555	PWY-7130	L-glucose degradation
BJD11_13570	PWY-2941	L-lysine biosynthesis II
BJD11_13570	PWY-2942	L-lysine biosynthesis III
BJD11_13570	PWY-5097	L-lysine biosynthesis VI
BJD11_13605	PWY-6910	hydroxymethylpyrimidine salvage
BJD11_13605	PWY-7356	thiamin salvage IV (yeast)
BJD11_13605	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BJD11_13710	PWY-2781	<i>cis</i>-zeatin biosynthesis
BJD11_13715	PWY-6614	tetrahydrofolate biosynthesis
BJD11_13755	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_13755	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
BJD11_13755	PWY-6596	adenosine nucleotides degradation I
BJD11_13755	PWY-6606	guanosine nucleotides degradation II
BJD11_13755	PWY-6607	guanosine nucleotides degradation I
BJD11_13755	PWY-6608	guanosine nucleotides degradation III
BJD11_13755	PWY-7185	UTP and CTP dephosphorylation I
BJD11_13755	PWY-7821	BJD11_13755
BJD11_13770	PWY-7560	methylerythritol phosphate pathway II
BJD11_13775	PWY-7560	methylerythritol phosphate pathway II
BJD11_13785	PWY-1042	glycolysis IV (plant cytosol)
BJD11_13785	PWY-1622	formaldehyde assimilation I (serine pathway)
BJD11_13785	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BJD11_13785	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_13785	PWY-5723	Rubisco shunt
BJD11_13785	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_13785	PWY-6886	1-butanol autotrophic biosynthesis
BJD11_13785	PWY-6901	superpathway of glucose and xylose degradation
BJD11_13785	PWY-7003	glycerol degradation to butanol
BJD11_13785	PWY-7124	ethylene biosynthesis V (engineered)
BJD11_13785	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
BJD11_13795	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
BJD11_13795	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
BJD11_13800	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
BJD11_13800	PWY-7177	UTP and CTP dephosphorylation II
BJD11_13800	PWY-7185	UTP and CTP dephosphorylation I
BJD11_13940	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
BJD11_13940	PWY-7688	BJD11_13940
BJD11_14110	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
BJD11_14125	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_14130	PWY-3461	L-tyrosine biosynthesis II
BJD11_14130	PWY-3462	L-phenylalanine biosynthesis II
BJD11_14130	PWY-6120	L-tyrosine biosynthesis III
BJD11_14130	PWY-6627	salinosporamide A biosynthesis
BJD11_14130	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
BJD11_14130	PWY-7626	bacilysin biosynthesis
BJD11_14185	PWY-5028	L-histidine degradation II
BJD11_14185	PWY-5030	L-histidine degradation III
BJD11_14190	PWY-5028	L-histidine degradation II
BJD11_14190	PWY-5030	L-histidine degradation III
BJD11_14200	PWY-5028	L-histidine degradation II
BJD11_14200	PWY-5030	L-histidine degradation III
BJD11_14220	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BJD11_14220	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
BJD11_14360	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BJD11_14360	PWY-5743	3-hydroxypropanoate cycle
BJD11_14360	PWY-5744	glyoxylate assimilation
BJD11_14360	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_14360	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_14360	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_14360	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_14365	PWY-5647	2-nitrobenzoate degradation I
BJD11_14365	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
BJD11_14365	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
BJD11_14365	PWY-6505	L-tryptophan degradation XII (Geobacillus)
BJD11_14375	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
BJD11_14375	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
BJD11_14380	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
BJD11_14380	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
BJD11_14380	PWY-7717	BJD11_14380
BJD11_14380	PWY-7765	BJD11_14380
BJD11_14405	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_14405	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
BJD11_14405	PWY-6596	adenosine nucleotides degradation I
BJD11_14405	PWY-6606	guanosine nucleotides degradation II
BJD11_14405	PWY-6607	guanosine nucleotides degradation I
BJD11_14405	PWY-6608	guanosine nucleotides degradation III
BJD11_14405	PWY-7185	UTP and CTP dephosphorylation I
BJD11_14405	PWY-7821	BJD11_14405
BJD11_14410	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
BJD11_14410	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BJD11_14410	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
BJD11_14490	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BJD11_14490	PWY-5743	3-hydroxypropanoate cycle
BJD11_14490	PWY-5744	glyoxylate assimilation
BJD11_14490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_14490	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_14490	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_14490	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_14565	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_14610	PWY-2201	folate transformations I
BJD11_14610	PWY-3841	folate transformations II
BJD11_14610	PWY-7977	BJD11_14610
BJD11_14650	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
BJD11_14650	PWY-7820	BJD11_14650
BJD11_14700	PWY-5392	reductive TCA cycle II
BJD11_14700	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BJD11_14700	PWY-5690	TCA cycle II (plants and fungi)
BJD11_14700	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_14700	PWY-6728	methylaspartate cycle
BJD11_14700	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_14700	PWY-7254	TCA cycle VII (acetate-producers)
BJD11_14700	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BJD11_14715	PWY-6123	inosine-5'-phosphate biosynthesis I
BJD11_14715	PWY-6124	inosine-5'-phosphate biosynthesis II
BJD11_14715	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_14715	PWY-7234	inosine-5'-phosphate biosynthesis III
BJD11_14735	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BJD11_14740	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BJD11_14745	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
BJD11_14745	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BJD11_14790	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
BJD11_14795	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
BJD11_14795	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
BJD11_15035	PWY-6803	phosphatidylcholine acyl editing
BJD11_15035	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
BJD11_15035	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
BJD11_15035	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
BJD11_15035	PWY-7783	BJD11_15035
BJD11_15040	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BJD11_15040	PWY-5743	3-hydroxypropanoate cycle
BJD11_15040	PWY-5744	glyoxylate assimilation
BJD11_15040	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_15040	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_15040	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_15040	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_15055	PWY-5392	reductive TCA cycle II
BJD11_15055	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BJD11_15055	PWY-5690	TCA cycle II (plants and fungi)
BJD11_15055	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_15055	PWY-6728	methylaspartate cycle
BJD11_15055	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_15055	PWY-7254	TCA cycle VII (acetate-producers)
BJD11_15055	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BJD11_15215	PWY-7799	BJD11_15215
BJD11_15215	PWY-7800	BJD11_15215
BJD11_15280	PWY-5667	CDP-diacylglycerol biosynthesis I
BJD11_15280	PWY-5981	CDP-diacylglycerol biosynthesis III
BJD11_15280	PWY-7817	BJD11_15280
BJD11_15285	PWY-7560	methylerythritol phosphate pathway II
BJD11_15310	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BJD11_15310	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BJD11_15310	PWY-5989	stearate biosynthesis II (bacteria and plants)
BJD11_15310	PWY-5994	palmitate biosynthesis I (animals and fungi)
BJD11_15310	PWY-6113	superpathway of mycolate biosynthesis
BJD11_15310	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BJD11_15310	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_15310	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BJD11_15310	PWY-7663	gondoate biosynthesis (anaerobic)
BJD11_15310	PWY-7664	oleate biosynthesis IV (anaerobic)
BJD11_15310	PWY-7858	BJD11_15310
BJD11_15310	PWYG-321	mycolate biosynthesis
BJD11_15335	PWY-4381	fatty acid biosynthesis initiation I
BJD11_15335	PWY-5743	3-hydroxypropanoate cycle
BJD11_15335	PWY-5744	glyoxylate assimilation
BJD11_15335	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_15335	PWY-6722	candicidin biosynthesis
BJD11_15730	PWY-6902	chitin degradation II
BJD11_15730	PWY-7822	BJD11_15730
BJD11_15730	PWY-7883	BJD11_15730
BJD11_15835	PWY-1361	benzoyl-CoA degradation I (aerobic)
BJD11_15835	PWY-5109	2-methylbutanoate biosynthesis
BJD11_15835	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
BJD11_15835	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
BJD11_15835	PWY-5177	glutaryl-CoA degradation
BJD11_15835	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_15835	PWY-6435	4-hydroxybenzoate biosynthesis V
BJD11_15835	PWY-6583	pyruvate fermentation to butanol I
BJD11_15835	PWY-6863	pyruvate fermentation to hexanol
BJD11_15835	PWY-6883	pyruvate fermentation to butanol II
BJD11_15835	PWY-6944	androstenedione degradation
BJD11_15835	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
BJD11_15835	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
BJD11_15835	PWY-7007	methyl ketone biosynthesis
BJD11_15835	PWY-7046	4-coumarate degradation (anaerobic)
BJD11_15835	PWY-7094	fatty acid salvage
BJD11_15835	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BJD11_15835	PWY-735	jasmonic acid biosynthesis
BJD11_15835	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
BJD11_15835	PWY-7606	docosahexaenoate biosynthesis III (mammals)
BJD11_15835	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
BJD11_15835	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
BJD11_15835	PWY-7726	BJD11_15835
BJD11_15835	PWY-7778	BJD11_15835
BJD11_15835	PWY-7779	BJD11_15835
BJD11_15865	PWY-5642	2,4-dinitrotoluene degradation
BJD11_15885	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_15895	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_15930	PWY-5506	methanol oxidation to formaldehyde IV
BJD11_15965	PWY-6829	tRNA methylation (yeast)
BJD11_15965	PWY-7285	methylwyosine biosynthesis
BJD11_15965	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
BJD11_16000	PWY-6317	galactose degradation I (Leloir pathway)
BJD11_16140	PWY-3781	aerobic respiration I (cytochrome c)
BJD11_16140	PWY-4521	arsenite oxidation I (respiratory)
BJD11_16140	PWY-6692	Fe(II) oxidation
BJD11_16140	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BJD11_16140	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
BJD11_16155	PWY-7560	methylerythritol phosphate pathway II
BJD11_16160	PWY-7884	BJD11_16160
BJD11_16170	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
BJD11_16170	PWY-6167	flavin biosynthesis II (archaea)
BJD11_16170	PWY-6168	flavin biosynthesis III (fungi)
BJD11_16170	PWY-7863	BJD11_16170
BJD11_16245	PWY-7802	BJD11_16245
BJD11_16760	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_16805	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_16805	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_16805	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_16805	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_16865	PWY-5747	2-methylcitrate cycle II
BJD11_16910	PWY-5958	acridone alkaloid biosynthesis
BJD11_16910	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BJD11_16910	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BJD11_16925	PWY-5367	petroselinate biosynthesis
BJD11_16925	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BJD11_16925	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BJD11_16925	PWY-5989	stearate biosynthesis II (bacteria and plants)
BJD11_16925	PWY-5994	palmitate biosynthesis I (animals and fungi)
BJD11_16925	PWY-6113	superpathway of mycolate biosynthesis
BJD11_16925	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BJD11_16925	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_16925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BJD11_16925	PWY-7663	gondoate biosynthesis (anaerobic)
BJD11_16925	PWY-7664	oleate biosynthesis IV (anaerobic)
BJD11_16925	PWY-7858	BJD11_16925
BJD11_16925	PWYG-321	mycolate biosynthesis
BJD11_16930	PWY-4381	fatty acid biosynthesis initiation I
BJD11_16930	PWY-6799	fatty acid biosynthesis (plant mitochondria)
BJD11_16930	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BJD11_16940	PWY-4381	fatty acid biosynthesis initiation I
BJD11_17130	PWY-6823	molybdenum cofactor biosynthesis
BJD11_17130	PWY-7887	BJD11_17130
BJD11_17140	PWY-6823	molybdenum cofactor biosynthesis
BJD11_17150	PWY-6823	molybdenum cofactor biosynthesis
BJD11_17160	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
BJD11_17160	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
BJD11_17255	PWY-5386	methylglyoxal degradation I
BJD11_17420	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BJD11_17420	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BJD11_17420	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BJD11_17420	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
BJD11_17435	PWY-2161	folate polyglutamylation
BJD11_17465	PWY-7782	BJD11_17465
BJD11_17465	PWY-7783	BJD11_17465
BJD11_17475	PWY-7378	aminopropanol phosphate biosynthesis II
BJD11_17560	PWY-1622	formaldehyde assimilation I (serine pathway)
BJD11_17560	PWY-5392	reductive TCA cycle II
BJD11_17560	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BJD11_17560	PWY-5690	TCA cycle II (plants and fungi)
BJD11_17560	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_17560	PWY-6728	methylaspartate cycle
BJD11_17560	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_17560	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_17560	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BJD11_17580	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
BJD11_17590	PWY-6164	3-dehydroquinate biosynthesis I
BJD11_17845	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
BJD11_17865	PWY-7560	methylerythritol phosphate pathway II
BJD11_17880	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BJD11_17890	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
BJD11_17930	PWY-7731	BJD11_17930
BJD11_17970	PWY-5057	L-valine degradation II
BJD11_17970	PWY-5076	L-leucine degradation III
BJD11_17970	PWY-5078	L-isoleucine degradation II
BJD11_17970	PWY-5101	L-isoleucine biosynthesis II
BJD11_17970	PWY-5103	L-isoleucine biosynthesis III
BJD11_17970	PWY-5104	L-isoleucine biosynthesis IV
BJD11_17970	PWY-5108	L-isoleucine biosynthesis V
BJD11_17970	PWY-7767	BJD11_17970
BJD11_18080	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BJD11_18080	PWY-5723	Rubisco shunt
BJD11_18095	PWY-2582	brassinosteroid biosynthesis II
BJD11_18095	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
BJD11_18095	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
BJD11_18095	PWY-6948	sitosterol degradation to androstenedione
BJD11_18095	PWY-699	brassinosteroid biosynthesis I
BJD11_18095	PWY-7299	progesterone biosynthesis
BJD11_18170	PWY-5530	sorbitol biosynthesis II
BJD11_18305	PWY-3841	folate transformations II
BJD11_18305	PWY-6614	tetrahydrofolate biosynthesis
BJD11_18315	PWY-3841	folate transformations II
BJD11_18315	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_18315	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_18315	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BJD11_18315	PWY-7199	pyrimidine deoxyribonucleosides salvage
BJD11_18315	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BJD11_18340	PWY-7039	phosphatidate metabolism, as a signaling molecule
BJD11_18340	PWY-7817	BJD11_18340
BJD11_18460	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
BJD11_18460	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
BJD11_18500	PWY-1622	formaldehyde assimilation I (serine pathway)
BJD11_18500	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BJD11_18500	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_18500	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_18500	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
BJD11_18500	PWY-6549	L-glutamine biosynthesis III
BJD11_18500	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_18500	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_18500	PWY-7124	ethylene biosynthesis V (engineered)
BJD11_18510	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
BJD11_18580	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_18585	PWY-2201	folate transformations I
BJD11_18585	PWY-3841	folate transformations II
BJD11_18595	PWY-6502	oxidized GTP and dGTP detoxification
BJD11_18595	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
BJD11_18595	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
BJD11_18595	PWY-6897	thiamin salvage II
BJD11_18595	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
BJD11_18595	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
BJD11_18595	PWY-7356	thiamin salvage IV (yeast)
BJD11_18595	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BJD11_18635	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_18635	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_18635	PWY-7953	BJD11_18635
BJD11_18640	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_18640	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_18640	PWY-7953	BJD11_18640
BJD11_18645	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_18645	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_18645	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_18645	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_18650	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_18650	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_18650	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_18650	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_18655	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_18655	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_18655	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_18660	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_18660	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_18660	PWY-7953	BJD11_18660
BJD11_18670	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_18670	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_18790	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
BJD11_18790	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
BJD11_18790	PWY-6896	thiamin salvage I
BJD11_18790	PWY-6897	thiamin salvage II
BJD11_18800	PWY-6167	flavin biosynthesis II (archaea)
BJD11_18800	PWY-6168	flavin biosynthesis III (fungi)
BJD11_18805	PWY-6167	flavin biosynthesis II (archaea)
BJD11_18805	PWY-6168	flavin biosynthesis III (fungi)
BJD11_18805	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BJD11_18805	PWY-7991	BJD11_18805
BJD11_18810	PWY-6167	flavin biosynthesis II (archaea)
BJD11_18810	PWY-6168	flavin biosynthesis III (fungi)
BJD11_18810	PWY-7980	BJD11_18810
BJD11_18820	PWY-7991	BJD11_18820
BJD11_18840	PWY-1622	formaldehyde assimilation I (serine pathway)
BJD11_18840	PWY-181	photorespiration
BJD11_18840	PWY-2161	folate polyglutamylation
BJD11_18840	PWY-2201	folate transformations I
BJD11_18840	PWY-3661	glycine betaine degradation I
BJD11_18840	PWY-3661-1	glycine betaine degradation II (mammalian)
BJD11_18840	PWY-3841	folate transformations II
BJD11_18840	PWY-5497	purine nucleobases degradation II (anaerobic)
BJD11_18860	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_18865	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_18870	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_18870	PWY-3162	L-tryptophan degradation V (side chain pathway)
BJD11_18870	PWY-5057	L-valine degradation II
BJD11_18870	PWY-5076	L-leucine degradation III
BJD11_18870	PWY-5078	L-isoleucine degradation II
BJD11_18870	PWY-5079	L-phenylalanine degradation III
BJD11_18870	PWY-5082	L-methionine degradation III
BJD11_18870	PWY-5480	pyruvate fermentation to ethanol I
BJD11_18870	PWY-5486	pyruvate fermentation to ethanol II
BJD11_18870	PWY-5751	phenylethanol biosynthesis
BJD11_18870	PWY-6313	serotonin degradation
BJD11_18870	PWY-6333	acetaldehyde biosynthesis I
BJD11_18870	PWY-6342	noradrenaline and adrenaline degradation
BJD11_18870	PWY-6587	pyruvate fermentation to ethanol III
BJD11_18870	PWY-6802	salidroside biosynthesis
BJD11_18870	PWY-6871	3-methylbutanol biosynthesis
BJD11_18870	PWY-7013	L-1,2-propanediol degradation
BJD11_18870	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BJD11_18870	PWY-7118	chitin degradation to ethanol
BJD11_18870	PWY-7396	butanol and isobutanol biosynthesis (engineered)
BJD11_18870	PWY-7798	BJD11_18870
BJD11_18900	PWY-6840	homoglutathione biosynthesis
BJD11_18900	PWY-7255	ergothioneine biosynthesis I (bacteria)
BJD11_18940	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
BJD11_18940	PWY-7494	choline degradation IV
BJD11_18945	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
BJD11_18945	PWY-7494	choline degradation IV
BJD11_18965	PWY-6906	chitin derivatives degradation
BJD11_18965	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
BJD11_18965	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
BJD11_19085	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BJD11_19085	PWY-6148	tetrahydromethanopterin biosynthesis
BJD11_19085	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
BJD11_19085	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BJD11_19085	PWY-7852	BJD11_19085
BJD11_19085	PWY-7853	BJD11_19085
BJD11_19145	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_19175	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BJD11_19175	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BJD11_19180	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BJD11_19180	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BJD11_19195	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_19195	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_19220	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_19220	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BJD11_19220	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BJD11_19220	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_19225	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BJD11_19225	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BJD11_19260	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_19260	PWY-3162	L-tryptophan degradation V (side chain pathway)
BJD11_19260	PWY-5057	L-valine degradation II
BJD11_19260	PWY-5076	L-leucine degradation III
BJD11_19260	PWY-5078	L-isoleucine degradation II
BJD11_19260	PWY-5079	L-phenylalanine degradation III
BJD11_19260	PWY-5082	L-methionine degradation III
BJD11_19260	PWY-5480	pyruvate fermentation to ethanol I
BJD11_19260	PWY-5486	pyruvate fermentation to ethanol II
BJD11_19260	PWY-5751	phenylethanol biosynthesis
BJD11_19260	PWY-6313	serotonin degradation
BJD11_19260	PWY-6333	acetaldehyde biosynthesis I
BJD11_19260	PWY-6342	noradrenaline and adrenaline degradation
BJD11_19260	PWY-6587	pyruvate fermentation to ethanol III
BJD11_19260	PWY-6802	salidroside biosynthesis
BJD11_19260	PWY-6871	3-methylbutanol biosynthesis
BJD11_19260	PWY-7013	L-1,2-propanediol degradation
BJD11_19260	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BJD11_19260	PWY-7118	chitin degradation to ethanol
BJD11_19260	PWY-7396	butanol and isobutanol biosynthesis (engineered)
BJD11_19260	PWY-7798	BJD11_19260
BJD11_19330	PWY-5839	menaquinol-7 biosynthesis
BJD11_19330	PWY-5844	menaquinol-9 biosynthesis
BJD11_19330	PWY-5849	menaquinol-6 biosynthesis
BJD11_19330	PWY-5890	menaquinol-10 biosynthesis
BJD11_19330	PWY-5891	menaquinol-11 biosynthesis
BJD11_19330	PWY-5892	menaquinol-12 biosynthesis
BJD11_19330	PWY-5895	menaquinol-13 biosynthesis
BJD11_19375	PWY-2941	L-lysine biosynthesis II
BJD11_19375	PWY-5097	L-lysine biosynthesis VI
BJD11_19440	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BJD11_19440	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BJD11_19570	PWY-7892	BJD11_19570
BJD11_19770	PWY-6891	thiazole biosynthesis II (Bacillus)
BJD11_19770	PWY-6892	thiazole biosynthesis I (E. coli)
BJD11_19770	PWY-7560	methylerythritol phosphate pathway II
BJD11_19825	PWY-5796	malonate decarboxylase activation
BJD11_19830	PWY-5796	malonate decarboxylase activation
BJD11_19835	PWY-6060	malonate degradation II (biotin-dependent)
BJD11_19840	PWY-4381	fatty acid biosynthesis initiation I
BJD11_19840	PWY-5743	3-hydroxypropanoate cycle
BJD11_19840	PWY-5744	glyoxylate assimilation
BJD11_19840	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_19840	PWY-6060	malonate degradation II (biotin-dependent)
BJD11_19840	PWY-6722	candicidin biosynthesis
BJD11_19850	PWY-5794	malonate degradation I (biotin-independent)
BJD11_19850	PWY-6060	malonate degradation II (biotin-dependent)
BJD11_19970	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
BJD11_19970	PWY-6164	3-dehydroquinate biosynthesis I
BJD11_19970	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
BJD11_20020	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_20020	PWY-6416	quinate degradation II
BJD11_20020	PWY-6707	gallate biosynthesis
BJD11_20135	PWY-6123	inosine-5'-phosphate biosynthesis I
BJD11_20135	PWY-6124	inosine-5'-phosphate biosynthesis II
BJD11_20135	PWY-7234	inosine-5'-phosphate biosynthesis III
BJD11_20145	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BJD11_20145	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BJD11_20145	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BJD11_20185	PWY-5381	pyridine nucleotide cycling (plants)
BJD11_20185	PWY-7761	BJD11_20185
BJD11_20275	PWY-6834	spermidine biosynthesis III
BJD11_20305	PWY-5958	acridone alkaloid biosynthesis
BJD11_20305	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BJD11_20305	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BJD11_20345	PWY-5958	acridone alkaloid biosynthesis
BJD11_20345	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BJD11_20345	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BJD11_20360	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BJD11_20360	PWY-5723	Rubisco shunt
BJD11_20370	PWY-6123	inosine-5'-phosphate biosynthesis I
BJD11_20370	PWY-6124	inosine-5'-phosphate biosynthesis II
BJD11_20370	PWY-7234	inosine-5'-phosphate biosynthesis III
BJD11_20390	PWY-6855	chitin degradation I (archaea)
BJD11_20390	PWY-6902	chitin degradation II
BJD11_20390	PWY-7822	BJD11_20390
BJD11_20595	PWY-2661	trehalose biosynthesis V
BJD11_20600	PWY-5941	glycogen degradation II (eukaryotic)
BJD11_20600	PWY-6724	starch degradation II
BJD11_20600	PWY-6737	starch degradation V
BJD11_20600	PWY-7238	sucrose biosynthesis II
BJD11_20605	PWY-2661	trehalose biosynthesis V
BJD11_20610	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
BJD11_20610	PWY-622	starch biosynthesis
BJD11_20610	PWY-7900	BJD11_20610
BJD11_20615	PWY-622	starch biosynthesis
BJD11_20710	PWY-7980	BJD11_20710
BJD11_20855	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
BJD11_20860	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_20860	PWY-6578	8-amino-7-oxononanoate biosynthesis III
BJD11_20860	PWY-7147	8-amino-7-oxononanoate biosynthesis II
BJD11_20870	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_20880	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_20950	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
BJD11_20955	PWY-6123	inosine-5'-phosphate biosynthesis I
BJD11_20955	PWY-6124	inosine-5'-phosphate biosynthesis II
BJD11_20955	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BJD11_20955	PWY-7234	inosine-5'-phosphate biosynthesis III
BJD11_20960	PWY-6041	4-sulfocatechol degradation
BJD11_20965	PWY-6041	4-sulfocatechol degradation
BJD11_20970	PWY-1361	benzoyl-CoA degradation I (aerobic)
BJD11_20970	PWY-2361	3-oxoadipate degradation
BJD11_20970	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
BJD11_21000	PWY-4261	glycerol degradation I
BJD11_21000	PWY-6118	glycerol-3-phosphate shuttle
BJD11_21000	PWY-6952	glycerophosphodiester degradation
BJD11_21010	PWY-4261	glycerol degradation I
BJD11_21085	PWY-5101	L-isoleucine biosynthesis II
BJD11_21085	PWY-5103	L-isoleucine biosynthesis III
BJD11_21085	PWY-5104	L-isoleucine biosynthesis IV
BJD11_21085	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BJD11_21155	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
BJD11_21155	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
BJD11_21155	PWY-6936	seleno-amino acid biosynthesis
BJD11_21155	PWY-702	L-methionine biosynthesis II
BJD11_21175	PWY-6700	queuosine biosynthesis
BJD11_21180	PWY-2201	folate transformations I
BJD11_21180	PWY-3841	folate transformations II
BJD11_21215	PWY-2201	folate transformations I
BJD11_21215	PWY-5497	purine nucleobases degradation II (anaerobic)
BJD11_21215	PWY-7909	BJD11_21215
BJD11_21310	PWY-5169	cyanurate degradation
BJD11_21310	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
BJD11_21350	PWY-6832	2-aminoethylphosphonate degradation II
BJD11_21365	PWY-5691	urate degradation to allantoin I
BJD11_21365	PWY-7394	urate degradation to allantoin II
BJD11_21365	PWY-7849	BJD11_21365
BJD11_21375	PWY-5691	urate degradation to allantoin I
BJD11_21375	PWY-7394	urate degradation to allantoin II
BJD11_21375	PWY-7849	BJD11_21375
BJD11_21540	PWY-4381	fatty acid biosynthesis initiation I
BJD11_21540	PWY-5743	3-hydroxypropanoate cycle
BJD11_21540	PWY-5744	glyoxylate assimilation
BJD11_21540	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_21540	PWY-6722	candicidin biosynthesis
BJD11_21575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_21580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_21580	PWY-7118	chitin degradation to ethanol
BJD11_21580	PWY-7294	xylose degradation IV
BJD11_21580	PWY-7295	L-arabinose degradation IV
BJD11_21580	PWY-7854	BJD11_21580
BJD11_21675	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BJD11_21675	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BJD11_21675	PWY-7953	BJD11_21675
BJD11_21710	PWY-4381	fatty acid biosynthesis initiation I
BJD11_21895	PWY-5667	CDP-diacylglycerol biosynthesis I
BJD11_21895	PWY-5981	CDP-diacylglycerol biosynthesis III
BJD11_21895	PWY-7902	BJD11_21895
BJD11_21925	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BJD11_21925	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BJD11_21955	PWY-6854	ethylene biosynthesis III (microbes)
BJD11_21960	PWY-6854	ethylene biosynthesis III (microbes)
BJD11_21985	PWY-381	nitrate reduction II (assimilatory)
BJD11_21985	PWY-5675	nitrate reduction V (assimilatory)
BJD11_21985	PWY-6549	L-glutamine biosynthesis III
BJD11_21985	PWY-6963	ammonia assimilation cycle I
BJD11_21985	PWY-6964	ammonia assimilation cycle II
BJD11_21995	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
BJD11_22085	PWY-7255	ergothioneine biosynthesis I (bacteria)
BJD11_22085	PWY-7550	ergothioneine biosynthesis II (fungi)
BJD11_22090	PWY-7255	ergothioneine biosynthesis I (bacteria)
BJD11_22150	PWY-6134	L-tyrosine biosynthesis IV
BJD11_22150	PWY-7158	L-phenylalanine degradation V
BJD11_22170	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
BJD11_22170	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
BJD11_22175	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
BJD11_22230	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
BJD11_22230	PWY-622	starch biosynthesis
BJD11_22230	PWY-7900	BJD11_22230
BJD11_22235	PWY-2622	trehalose biosynthesis IV
BJD11_22235	PWY-7900	BJD11_22235
BJD11_22240	PWY-7900	BJD11_22240
BJD11_22310	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BJD11_22310	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BJD11_22310	PWY-5989	stearate biosynthesis II (bacteria and plants)
BJD11_22310	PWY-6113	superpathway of mycolate biosynthesis
BJD11_22310	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BJD11_22310	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_22310	PWY-7663	gondoate biosynthesis (anaerobic)
BJD11_22310	PWY-7664	oleate biosynthesis IV (anaerobic)
BJD11_22310	PWY-7858	BJD11_22310
BJD11_22310	PWYG-321	mycolate biosynthesis
BJD11_22345	PWY-6825	phosphatidylcholine biosynthesis V
BJD11_22405	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_22405	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
BJD11_22405	PWY-6638	sulfolactate degradation III
BJD11_22405	PWY-6642	(<i>R</i>)-cysteate degradation
BJD11_22405	PWY-6643	coenzyme M biosynthesis II
BJD11_22405	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_22405	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_22405	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BJD11_22425	PWY-5484	glycolysis II (from fructose 6-phosphate)
BJD11_22980	PWY-6348	phosphate acquisition
BJD11_23025	PWY-7533	gliotoxin biosynthesis
BJD11_23380	PWY-5663	tetrahydrobiopterin biosynthesis I
BJD11_23380	PWY-5664	tetrahydrobiopterin biosynthesis II
BJD11_23380	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BJD11_23380	PWY-6703	preQ<sub>0</sub> biosynthesis
BJD11_23380	PWY-6983	tetrahydrobiopterin biosynthesis III
BJD11_23380	PWY-7442	drosopterin and aurodrosopterin biosynthesis
BJD11_23380	PWY-7852	BJD11_23380
BJD11_23425	PWY-5874	heme degradation
BJD11_23485	PWY-7199	pyrimidine deoxyribonucleosides salvage
BJD11_23520	PWY-5686	UMP biosynthesis
BJD11_23520	PWY-7790	BJD11_23520
BJD11_23520	PWY-7791	BJD11_23520
BJD11_23555	PWY-5667	CDP-diacylglycerol biosynthesis I
BJD11_23555	PWY-6453	stigma estolide biosynthesis
BJD11_23555	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
BJD11_23555	PWY-7587	oleate biosynthesis III (cyanobacteria)
BJD11_23615	PWY-6717	(1,4)-&beta;-xylan degradation
BJD11_23615	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
BJD11_23625	PWY-6717	(1,4)-&beta;-xylan degradation
BJD11_23625	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
BJD11_23630	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
BJD11_23630	PWY-7248	pectin degradation III
BJD11_23635	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_23640	PWY-6717	(1,4)-&beta;-xylan degradation
BJD11_23640	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
BJD11_23660	PWY-4261	glycerol degradation I
BJD11_23720	PWY-6531	mannitol cycle
BJD11_23740	PWY-6807	xyloglucan degradation II (exoglucanase)
BJD11_23875	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_23875	PWY-6416	quinate degradation II
BJD11_23875	PWY-6707	gallate biosynthesis
BJD11_23890	PWY-5530	sorbitol biosynthesis II
BJD11_23890	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_24015	PWY-5108	L-isoleucine biosynthesis V
BJD11_24015	PWY-5132	humulone biosynthesis
BJD11_24015	PWY-5133	cohumulone biosynthesis
BJD11_24015	PWY-6672	<i>cis</i>-genanyl-CoA degradation
BJD11_24015	PWY-7118	chitin degradation to ethanol
BJD11_24015	PWY-7857	BJD11_24015
BJD11_24045	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
BJD11_24060	PWY-6012	acyl carrier protein metabolism I
BJD11_24060	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
BJD11_24060	PWY-6289	petrobactin biosynthesis
BJD11_24135	PWY-7701	BJD11_24135
BJD11_24405	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
BJD11_24460	PWY-5667	CDP-diacylglycerol biosynthesis I
BJD11_24460	PWY-5981	CDP-diacylglycerol biosynthesis III
BJD11_24460	PWY-6453	stigma estolide biosynthesis
BJD11_24460	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
BJD11_24460	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
BJD11_24460	PWY-7587	oleate biosynthesis III (cyanobacteria)
BJD11_24460	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
BJD11_24460	PWY-7782	BJD11_24460
BJD11_24465	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BJD11_24465	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BJD11_24465	PWY-5989	stearate biosynthesis II (bacteria and plants)
BJD11_24465	PWY-5994	palmitate biosynthesis I (animals and fungi)
BJD11_24465	PWY-6113	superpathway of mycolate biosynthesis
BJD11_24465	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BJD11_24465	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BJD11_24465	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BJD11_24465	PWY-7663	gondoate biosynthesis (anaerobic)
BJD11_24465	PWY-7664	oleate biosynthesis IV (anaerobic)
BJD11_24465	PWY-7858	BJD11_24465
BJD11_24465	PWYG-321	mycolate biosynthesis
BJD11_24555	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BJD11_24590	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BJD11_24590	PWY-5743	3-hydroxypropanoate cycle
BJD11_24590	PWY-5744	glyoxylate assimilation
BJD11_24590	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BJD11_24590	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BJD11_24590	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BJD11_24590	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BJD11_24600	PWY-5392	reductive TCA cycle II
BJD11_24600	PWY-5537	pyruvate fermentation to acetate V
BJD11_24600	PWY-5538	pyruvate fermentation to acetate VI
BJD11_24600	PWY-5690	TCA cycle II (plants and fungi)
BJD11_24600	PWY-5913	TCA cycle VI (obligate autotrophs)
BJD11_24600	PWY-6728	methylaspartate cycle
BJD11_24600	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BJD11_24600	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BJD11_24615	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BJD11_24615	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_24615	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BJD11_24615	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BJD11_24615	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_24615	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_24615	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_24615	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BJD11_24620	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BJD11_24620	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_24620	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BJD11_24620	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BJD11_24620	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_24620	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_24620	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_24620	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BJD11_24650	PWY-6654	phosphopantothenate biosynthesis III
BJD11_24765	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BJD11_24765	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BJD11_24785	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BJD11_24880	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BJD11_24880	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BJD11_24885	PWY-3961	phosphopantothenate biosynthesis II
BJD11_24900	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BJD11_24900	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BJD11_24900	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BJD11_24900	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
BJD11_24900	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BJD11_24900	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BJD11_24930	PWY-31	canavanine degradation
BJD11_24930	PWY-4984	urea cycle
BJD11_24930	PWY-6305	putrescine biosynthesis IV
BJD11_24930	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis