BER92_00005 SM00382 ATPases associated with a variety of cellular activities BER92_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain BER92_00010 SM00480 DNA polymerase III beta subunit BER92_00025 SM00387 Histidine kinase-like ATPases BER92_00025 SM00433 TopoisomeraseII BER92_00040 SM00028 Tetratricopeptide repeats BER92_00085 SM00155 Phospholipase D. Active site motifs. BER92_00120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER92_00120 SM00245 tail specific protease BER92_00195 SM00487 DEAD-like helicases superfamily BER92_00195 SM00490 helicase superfamily c-terminal domain BER92_00215 SM00986 Uracil DNA glycosylase superfamily BER92_00215 SM00987 UreE urease accessory protein, C-terminal domain BER92_00220 SM00448 cheY-homologous receiver domain BER92_00230 SM00382 ATPases associated with a variety of cellular activities BER92_00235 SM00487 DEAD-like helicases superfamily BER92_00235 SM00490 helicase superfamily c-terminal domain BER92_00245 SM00357 Cold shock protein domain BER92_00245 SM00382 ATPases associated with a variety of cellular activities BER92_00245 SM00959 Rho termination factor, N-terminal domain BER92_00275 SM00257 Lysin motif BER92_00315 SM01150 BER92_00315 BER92_00400 SM00563 Phosphate acyltransferases BER92_00405 SM00829 Enoylreductase BER92_00515 SM00487 DEAD-like helicases superfamily BER92_00515 SM00490 helicase superfamily c-terminal domain BER92_00525 SM00326 Src homology 3 domains BER92_00530 SM00861 Transketolase, pyrimidine binding domain BER92_00560 SM00347 helix_turn_helix multiple antibiotic resistance protein BER92_00610 SM00382 ATPases associated with a variety of cellular activities BER92_00630 SM00382 ATPases associated with a variety of cellular activities BER92_00995 SM00257 Lysin motif BER92_01020 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BER92_01020 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BER92_01020 SM00493 BER92_01020 BER92_01075 SM00564 beta-propeller repeat BER92_01095 SM00387 Histidine kinase-like ATPases BER92_01095 SM00388 His Kinase A (phosphoacceptor) domain BER92_01095 SM00448 cheY-homologous receiver domain BER92_01105 SM00346 helix_turn_helix isocitrate lyase regulation BER92_01120 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BER92_01145 SM00421 helix_turn_helix, Lux Regulon BER92_01145 SM00448 cheY-homologous receiver domain BER92_01220 SM00155 Phospholipase D. Active site motifs. BER92_01390 SM01060 BER92_01390 BER92_01430 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER92_01450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_01450 SM00387 Histidine kinase-like ATPases BER92_01450 SM00388 His Kinase A (phosphoacceptor) domain BER92_01455 SM00448 cheY-homologous receiver domain BER92_01455 SM00862 Transcriptional regulatory protein, C terminal BER92_01565 SM00052 Putative diguanylate phosphodiesterase BER92_01580 SM00382 ATPases associated with a variety of cellular activities BER92_01590 SM00938 Nitrogen regulatory protein P-II BER92_01640 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BER92_01640 SM00474 3'-5' exonuclease BER92_01640 SM00475 5'-3' exonuclease BER92_01640 SM00482 DNA polymerase A domain BER92_01695 SM00563 Phosphate acyltransferases BER92_01730 SM00822 BER92_01730 BER92_01750 SM00825 Beta-ketoacyl synthase BER92_01760 SM00248 ankyrin repeats BER92_01765 SM00226 Low molecular weight phosphatase family BER92_01785 SM01057 Eukaryotic-type carbonic anhydrase BER92_01790 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_01790 SM00924 MgtE intracellular N domain BER92_01795 SM00881 CoA binding domain BER92_01835 SM00487 DEAD-like helicases superfamily BER92_01835 SM00490 helicase superfamily c-terminal domain BER92_02080 SM00450 Rhodanese Homology Domain BER92_02150 SM00967 RNA 2'-O ribose methyltransferase substrate binding BER92_02180 SM00838 Elongation factor G C-terminus BER92_02230 SM00829 Enoylreductase BER92_02275 SM00382 ATPases associated with a variety of cellular activities BER92_02285 SM00829 Enoylreductase BER92_02300 SM00855 Phosphoglycerate mutase family BER92_02315 SM00528 Domain in histone-like proteins of HNS family BER92_02320 SM00642 Alpha-amylase domain BER92_02345 SM00448 cheY-homologous receiver domain BER92_02345 SM00862 Transcriptional regulatory protein, C terminal BER92_02350 SM00387 Histidine kinase-like ATPases BER92_02350 SM00388 His Kinase A (phosphoacceptor) domain BER92_02455 SM00829 Enoylreductase BER92_02565 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_02565 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_02565 SM00091 PAS domain BER92_02565 SM00267 diguanylate cyclase BER92_02580 SM00637 BER92_02580 BER92_02610 SM00448 cheY-homologous receiver domain BER92_02610 SM00850 LytTr DNA-binding domain BER92_02690 SM00382 ATPases associated with a variety of cellular activities BER92_02690 SM01086 C-terminal, D2-small domain, of ClpB protein BER92_02720 SM00267 diguanylate cyclase BER92_02725 SM01263 BER92_02725 BER92_02745 SM00268 Actin BER92_02770 SM00710 Parallel beta-helix repeats BER92_02785 SM00936 Penicillin-binding protein 5, C-terminal domain BER92_02805 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_02830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER92_02830 SM00245 tail specific protease BER92_02870 SM01350 BER92_02870 BER92_02880 SM00749 bacterial OsmY and nodulation domain BER92_02885 SM00387 Histidine kinase-like ATPases BER92_02885 SM00388 His Kinase A (phosphoacceptor) domain BER92_02890 SM00448 cheY-homologous receiver domain BER92_02895 SM00387 Histidine kinase-like ATPases BER92_02895 SM00388 His Kinase A (phosphoacceptor) domain BER92_02895 SM00448 cheY-homologous receiver domain BER92_02950 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER92_02950 SM00866 BER92_02950 BER92_02960 SM00354 helix_turn _helix lactose operon repressor BER92_02985 SM00829 Enoylreductase BER92_03075 SM00450 Rhodanese Homology Domain BER92_03100 SM00382 ATPases associated with a variety of cellular activities BER92_03135 SM01154 BER92_03135 BER92_03140 SM00642 Alpha-amylase domain BER92_03155 SM00354 helix_turn _helix lactose operon repressor BER92_03160 SM00822 BER92_03160 BER92_03175 SM00448 cheY-homologous receiver domain BER92_03175 SM00862 Transcriptional regulatory protein, C terminal BER92_03180 SM00387 Histidine kinase-like ATPases BER92_03180 SM00388 His Kinase A (phosphoacceptor) domain BER92_03190 SM00421 helix_turn_helix, Lux Regulon BER92_03190 SM00448 cheY-homologous receiver domain BER92_03225 SM00387 Histidine kinase-like ATPases BER92_03225 SM00388 His Kinase A (phosphoacceptor) domain BER92_03225 SM00448 cheY-homologous receiver domain BER92_03240 SM00919 Malic enzyme, NAD binding domain BER92_03240 SM01274 BER92_03240 BER92_03305 SM01329 BER92_03305 BER92_03320 SM00917 LeuA allosteric (dimerisation) domain BER92_03365 SM00862 Transcriptional regulatory protein, C terminal BER92_03375 SM00342 helix_turn_helix, arabinose operon control protein BER92_03435 SM00464 Found in ATP-dependent protease La (LON) BER92_03540 SM01011 Aminopeptidase P, N-terminal domain BER92_03560 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_03580 SM00072 Guanylate kinase homologues. BER92_03585 SM01409 BER92_03585 BER92_03590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER92_03590 SM00954 Region found in RelA / SpoT proteins BER92_03600 SM00487 DEAD-like helicases superfamily BER92_03600 SM00490 helicase superfamily c-terminal domain BER92_03655 SM00965 Secretin and TonB N terminus short domain BER92_03795 SM00842 Cell division protein FtsA BER92_03800 SM00864 Tubulin/FtsZ family, GTPase domain BER92_03800 SM00865 Tubulin/FtsZ family, C-terminal domain BER92_03820 SM00957 SecA DEAD-like domain BER92_03820 SM00958 SecA preprotein cross-linking domain BER92_03850 SM00829 Enoylreductase BER92_03925 SM00382 ATPases associated with a variety of cellular activities BER92_03925 SM00448 cheY-homologous receiver domain BER92_03930 SM00387 Histidine kinase-like ATPases BER92_03930 SM00388 His Kinase A (phosphoacceptor) domain BER92_03940 SM00881 CoA binding domain BER92_04070 SM00363 S4 RNA-binding domain BER92_04075 SM00448 cheY-homologous receiver domain BER92_04085 SM00341 Helicase and RNase D C-terminal BER92_04085 SM00487 DEAD-like helicases superfamily BER92_04085 SM00490 helicase superfamily c-terminal domain BER92_04085 SM00956 BER92_04085 BER92_04095 SM00382 ATPases associated with a variety of cellular activities BER92_04095 SM00487 DEAD-like helicases superfamily BER92_04095 SM00490 helicase superfamily c-terminal domain BER92_04095 SM00847 Helicase associated domain (HA2) Add an annotation BER92_04120 SM00954 Region found in RelA / SpoT proteins BER92_04145 SM00491 BER92_04145 BER92_04165 SM00448 cheY-homologous receiver domain BER92_04170 SM00448 cheY-homologous receiver domain BER92_04175 SM00260 Two component signalling adaptor domain BER92_04180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_04185 SM00073 Histidine Phosphotransfer domain BER92_04185 SM00260 Two component signalling adaptor domain BER92_04185 SM00387 Histidine kinase-like ATPases BER92_04185 SM00448 cheY-homologous receiver domain BER92_04185 SM01231 BER92_04185 BER92_04220 SM00369 Leucine-rich repeats, typical (most populated) subfamily BER92_04235 SM00812 Alpha-L-fucosidase BER92_04275 SM00860 SMI1 / KNR4 family BER92_04335 SM01211 BER92_04335 BER92_04355 SM00382 ATPases associated with a variety of cellular activities BER92_04415 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER92_04415 SM00866 BER92_04415 BER92_04470 SM00382 ATPases associated with a variety of cellular activities BER92_04550 SM00996 S-adenosyl-L-homocysteine hydrolase BER92_04550 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER92_04620 SM00387 Histidine kinase-like ATPases BER92_04620 SM00388 His Kinase A (phosphoacceptor) domain BER92_04625 SM00448 cheY-homologous receiver domain BER92_04625 SM00862 Transcriptional regulatory protein, C terminal BER92_04635 SM00382 ATPases associated with a variety of cellular activities BER92_04735 SM00650 Ribosomal RNA adenine dimethylases BER92_04855 SM00421 helix_turn_helix, Lux Regulon BER92_04915 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BER92_04915 SM00475 5'-3' exonuclease BER92_05015 SM00852 Probable molybdopterin binding domain BER92_05020 SM00028 Tetratricopeptide repeats BER92_05025 SM00937 BER92_05025 BER92_05035 SM00028 Tetratricopeptide repeats BER92_05055 SM01400 BER92_05055 BER92_05105 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BER92_05105 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BER92_05110 SM00649 Ribosomal protein L11/L12 BER92_05135 SM00663 RNA polymerase I subunit A N-terminus BER92_05150 SM00838 Elongation factor G C-terminus BER92_05150 SM00889 Elongation factor G, domain IV BER92_05160 SM01403 BER92_05160 BER92_05180 SM01382 BER92_05180 BER92_05180 SM01383 BER92_05180 BER92_05195 SM00322 K homology RNA-binding domain BER92_05215 SM01374 BER92_05215 BER92_05220 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BER92_05280 SM00363 S4 RNA-binding domain BER92_05280 SM01390 BER92_05280 BER92_05285 SM00662 RNA polymerases D BER92_05375 SM00869 Autotransporter beta-domain BER92_05410 SM00530 Helix-turn-helix XRE-family like proteins BER92_05445 SM00267 diguanylate cyclase BER92_05510 SM00530 Helix-turn-helix XRE-family like proteins BER92_05540 SM00382 ATPases associated with a variety of cellular activities BER92_05615 SM00855 Phosphoglycerate mutase family BER92_05655 SM00052 Putative diguanylate phosphodiesterase BER92_05660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER92_05795 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_05865 SM00867 YceI-like domain BER92_05875 SM00867 YceI-like domain BER92_05880 SM00387 Histidine kinase-like ATPases BER92_05880 SM00388 His Kinase A (phosphoacceptor) domain BER92_05880 SM00448 cheY-homologous receiver domain BER92_05905 SM00382 ATPases associated with a variety of cellular activities BER92_05905 SM00962 SRP54-type protein, GTPase domain BER92_05905 SM00963 SRP54-type protein, helical bundle domain BER92_05950 SM00363 S4 RNA-binding domain BER92_05980 SM00267 diguanylate cyclase BER92_05995 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BER92_06020 SM00873 B3/4 domain BER92_06020 SM00874 tRNA synthetase B5 domain BER92_06020 SM00896 Ferredoxin-fold anticodon binding domain BER92_06025 SM00411 bacterial (prokaryotic) histone like domain BER92_06030 SM00422 helix_turn_helix, mercury resistance BER92_06105 SM00861 Transketolase, pyrimidine binding domain BER92_06115 SM00507 HNH nucleases BER92_06185 SM00478 endonuclease III BER92_06190 SM00382 ATPases associated with a variety of cellular activities BER92_06190 SM00962 SRP54-type protein, GTPase domain BER92_06190 SM00963 SRP54-type protein, helical bundle domain BER92_06195 SM00342 helix_turn_helix, arabinose operon control protein BER92_06220 SM01130 BER92_06220 BER92_06280 SM00944 Pro-kumamolisin, activation domain BER92_06360 SM00481 DNA polymerase alpha chain like domain BER92_06400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER92_06455 SM00972 Spore Coat Protein U domain BER92_06470 SM00972 Spore Coat Protein U domain BER92_06480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER92_06500 SM01172 BER92_06500 BER92_06505 SM00710 Parallel beta-helix repeats BER92_06505 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BER92_06535 SM00434 DNA Topoisomerase IV BER92_06540 SM00347 helix_turn_helix multiple antibiotic resistance protein BER92_06600 SM00347 helix_turn_helix multiple antibiotic resistance protein BER92_06625 SM00382 ATPases associated with a variety of cellular activities BER92_06635 SM00947 Carbonic anhydrase BER92_06655 SM00357 Cold shock protein domain BER92_06755 SM00530 Helix-turn-helix XRE-family like proteins BER92_06805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER92_06850 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_06850 SM01091 Transporter associated domain BER92_06870 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_06910 SM00487 DEAD-like helicases superfamily BER92_06910 SM00490 helicase superfamily c-terminal domain BER92_06925 SM00528 Domain in histone-like proteins of HNS family BER92_06940 SM00474 3'-5' exonuclease BER92_06960 SM00838 Elongation factor G C-terminus BER92_06975 SM00358 Double-stranded RNA binding motif BER92_06975 SM00535 Ribonuclease III family BER92_06990 SM00448 cheY-homologous receiver domain BER92_07000 SM01118 BER92_07000 BER92_07030 SM00357 Cold shock protein domain BER92_07040 SM00487 DEAD-like helicases superfamily BER92_07040 SM00490 helicase superfamily c-terminal domain BER92_07095 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BER92_07130 SM00257 Lysin motif BER92_07205 SM00052 Putative diguanylate phosphodiesterase BER92_07205 SM00267 diguanylate cyclase BER92_07205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_07220 SM00822 BER92_07220 BER92_07265 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BER92_07270 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER92_07320 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_07320 SM00322 K homology RNA-binding domain BER92_07340 SM01387 BER92_07340 BER92_07345 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_07345 SM00322 K homology RNA-binding domain BER92_07375 SM01001 AIR carboxylase BER92_07445 SM00448 cheY-homologous receiver domain BER92_07445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER92_07450 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_07450 SM00091 PAS domain BER92_07450 SM00387 Histidine kinase-like ATPases BER92_07450 SM00388 His Kinase A (phosphoacceptor) domain BER92_07450 SM00448 cheY-homologous receiver domain BER92_07450 SM01079 BER92_07450 BER92_07515 SM01230 BER92_07515 BER92_07520 SM01230 BER92_07520 BER92_07545 SM00382 ATPases associated with a variety of cellular activities BER92_07570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_07570 SM00091 PAS domain BER92_07570 SM00911 HWE histidine kinase BER92_07690 SM00487 DEAD-like helicases superfamily BER92_07690 SM00490 helicase superfamily c-terminal domain BER92_07745 SM00382 ATPases associated with a variety of cellular activities BER92_07810 SM00382 ATPases associated with a variety of cellular activities BER92_07890 SM00530 Helix-turn-helix XRE-family like proteins BER92_07975 SM00271 DnaJ molecular chaperone homology domain BER92_08020 SM00382 ATPases associated with a variety of cellular activities BER92_08045 SM00861 Transketolase, pyrimidine binding domain BER92_08055 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BER92_08115 SM00382 ATPases associated with a variety of cellular activities BER92_08120 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER92_08140 SM00984 UDP binding domain BER92_08160 SM00354 helix_turn _helix lactose operon repressor BER92_08180 SM01018 B12 binding domain BER92_08190 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BER92_08210 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_08210 SM00357 Cold shock protein domain BER92_08210 SM00955 BER92_08210 BER92_08215 SM00967 RNA 2'-O ribose methyltransferase substrate binding BER92_08230 SM00479 BER92_08230 BER92_08240 SM00382 ATPases associated with a variety of cellular activities BER92_08285 SM00947 Carbonic anhydrase BER92_08295 SM00478 endonuclease III BER92_08320 SM00450 Rhodanese Homology Domain BER92_08330 SM00644 BER92_08330 BER92_08355 SM00981 BER92_08355 BER92_08385 SM00479 BER92_08385 BER92_08410 SM00947 Carbonic anhydrase BER92_08460 SM00968 SMC proteins Flexible Hinge Domain BER92_08465 SM00771 ZipA, C-terminal domain (FtsZ-binding) BER92_08470 SM00292 breast cancer carboxy-terminal domain BER92_08470 SM00532 Ligase N family BER92_08495 SM00434 DNA Topoisomerase IV BER92_08535 SM00345 helix_turn_helix gluconate operon transcriptional repressor BER92_08535 SM00866 BER92_08535 BER92_08550 SM00240 Forkhead associated domain BER92_08590 SM00859 Semialdehyde dehydrogenase, NAD binding domain BER92_08600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_08600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_08605 SM00382 ATPases associated with a variety of cellular activities BER92_08610 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_08610 SM00091 PAS domain BER92_08610 SM00387 Histidine kinase-like ATPases BER92_08610 SM00388 His Kinase A (phosphoacceptor) domain BER92_08610 SM00448 cheY-homologous receiver domain BER92_08700 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_08700 SM01091 Transporter associated domain BER92_08725 SM00387 Histidine kinase-like ATPases BER92_08725 SM00433 TopoisomeraseII BER92_08745 SM01192 BER92_08745 BER92_08745 SM01193 BER92_08745 BER92_08770 SM00463 Small MutS-related domain BER92_08790 SM00257 Lysin motif BER92_08885 SM00382 ATPases associated with a variety of cellular activities BER92_08910 SM00363 S4 RNA-binding domain BER92_08935 SM00354 helix_turn _helix lactose operon repressor BER92_09010 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_09015 SM00411 bacterial (prokaryotic) histone like domain BER92_09025 SM00028 Tetratricopeptide repeats BER92_09035 SM00822 BER92_09035 BER92_09085 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_09085 SM01240 BER92_09085 BER92_09270 SM01007 Class II Aldolase and Adducin N-terminal domain BER92_09310 SM00841 Elongation factor P, C-terminal BER92_09310 SM01185 BER92_09310 BER92_09315 SM00822 BER92_09315 BER92_09330 SM00899 BER92_09330 BER92_09360 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BER92_09375 SM00851 MGS-like domain BER92_09375 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BER92_09395 SM00937 BER92_09395 BER92_09405 SM00448 cheY-homologous receiver domain BER92_09405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BER92_09415 SM00073 Histidine Phosphotransfer domain BER92_09415 SM00387 Histidine kinase-like ATPases BER92_09415 SM00388 His Kinase A (phosphoacceptor) domain BER92_09415 SM00448 cheY-homologous receiver domain BER92_09440 SM00966 SpoVT / AbrB like domain BER92_09460 SM00052 Putative diguanylate phosphodiesterase BER92_09460 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_09460 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_09460 SM00091 PAS domain BER92_09460 SM00267 diguanylate cyclase BER92_09465 SM00448 cheY-homologous receiver domain BER92_09475 SM00138 Methyltransferase, chemotaxis proteins BER92_09485 SM00260 Two component signalling adaptor domain BER92_09495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_09495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_09505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_09505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_09510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_09510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_09520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_09520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_09540 SM00073 Histidine Phosphotransfer domain BER92_09540 SM00260 Two component signalling adaptor domain BER92_09540 SM00387 Histidine kinase-like ATPases BER92_09540 SM01231 BER92_09540 BER92_09545 SM00448 cheY-homologous receiver domain BER92_09555 SM00260 Two component signalling adaptor domain BER92_09720 SM00363 S4 RNA-binding domain BER92_09725 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_09735 SM00421 helix_turn_helix, Lux Regulon BER92_09735 SM00448 cheY-homologous receiver domain BER92_09740 SM00450 Rhodanese Homology Domain BER92_09760 SM00984 UDP binding domain BER92_09830 SM00382 ATPases associated with a variety of cellular activities BER92_09830 SM01086 C-terminal, D2-small domain, of ClpB protein BER92_10035 SM00852 Probable molybdopterin binding domain BER92_10055 SM00450 Rhodanese Homology Domain BER92_10060 SM00852 Probable molybdopterin binding domain BER92_10065 SM00382 ATPases associated with a variety of cellular activities BER92_10070 SM00564 beta-propeller repeat BER92_10085 SM00028 Tetratricopeptide repeats BER92_10095 SM00562 BER92_10095 BER92_10125 SM00382 ATPases associated with a variety of cellular activities BER92_10140 SM00382 ATPases associated with a variety of cellular activities BER92_10140 SM00843 BER92_10140 BER92_10160 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_10165 SM00382 ATPases associated with a variety of cellular activities BER92_10165 SM01086 C-terminal, D2-small domain, of ClpB protein BER92_10190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_10210 SM00091 PAS domain BER92_10210 SM00387 Histidine kinase-like ATPases BER92_10215 SM00052 Putative diguanylate phosphodiesterase BER92_10215 SM00267 diguanylate cyclase BER92_10215 SM00448 cheY-homologous receiver domain BER92_10220 SM00387 Histidine kinase-like ATPases BER92_10235 SM00858 BER92_10235 BER92_10240 SM00260 Two component signalling adaptor domain BER92_10240 SM00448 cheY-homologous receiver domain BER92_10285 SM00047 Lysozyme subfamily 2 BER92_10325 SM00421 helix_turn_helix, Lux Regulon BER92_10325 SM00448 cheY-homologous receiver domain BER92_10335 SM00448 cheY-homologous receiver domain BER92_10340 SM00382 ATPases associated with a variety of cellular activities BER92_10380 SM00382 ATPases associated with a variety of cellular activities BER92_10435 SM00267 diguanylate cyclase BER92_10440 SM00267 diguanylate cyclase BER92_10455 SM00382 ATPases associated with a variety of cellular activities BER92_10455 SM00962 SRP54-type protein, GTPase domain BER92_10470 SM00448 cheY-homologous receiver domain BER92_10480 SM00073 Histidine Phosphotransfer domain BER92_10480 SM00260 Two component signalling adaptor domain BER92_10480 SM00387 Histidine kinase-like ATPases BER92_10480 SM01231 BER92_10480 BER92_10545 SM00869 Autotransporter beta-domain BER92_10705 SM00014 Acid phosphatase homologues BER92_10715 SM00387 Histidine kinase-like ATPases BER92_10720 SM00448 cheY-homologous receiver domain BER92_10730 SM00052 Putative diguanylate phosphodiesterase BER92_10730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_10730 SM00267 diguanylate cyclase BER92_10880 SM00758 BER92_10880 BER92_10935 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BER92_10960 SM01130 BER92_10960 BER92_10980 SM00670 Large family of predicted nucleotide-binding domains BER92_11035 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BER92_11045 SM00382 ATPases associated with a variety of cellular activities BER92_11185 SM00382 ATPases associated with a variety of cellular activities BER92_11195 SM01103 BER92_11195 BER92_11480 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BER92_11480 SM00465 GIY-YIG type nucleases (URI domain) BER92_11505 SM00382 ATPases associated with a variety of cellular activities BER92_11520 SM00849 Metallo-beta-lactamase superfamily BER92_11530 SM00382 ATPases associated with a variety of cellular activities BER92_11580 SM00382 ATPases associated with a variety of cellular activities BER92_11655 SM00448 cheY-homologous receiver domain BER92_11660 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_11660 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_11660 SM00091 PAS domain BER92_11660 SM00387 Histidine kinase-like ATPases BER92_11660 SM00388 His Kinase A (phosphoacceptor) domain BER92_11660 SM00448 cheY-homologous receiver domain BER92_11665 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_11665 SM00732 Likely ribonuclease with RNase H fold. BER92_11730 SM00479 BER92_11730 BER92_11740 SM00529 Helix-turn-helix diphteria tox regulatory element BER92_11845 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BER92_11865 SM00859 Semialdehyde dehydrogenase, NAD binding domain BER92_11900 SM00840 BER92_11900 BER92_11955 SM00656 BER92_11955 BER92_11990 SM00841 Elongation factor P, C-terminal BER92_11990 SM01185 BER92_11990 BER92_12025 SM00382 ATPases associated with a variety of cellular activities BER92_12030 SM00382 ATPases associated with a variety of cellular activities BER92_12030 SM00487 DEAD-like helicases superfamily BER92_12030 SM00490 helicase superfamily c-terminal domain BER92_12055 SM00357 Cold shock protein domain BER92_12065 SM01322 BER92_12065 BER92_12075 SM00052 Putative diguanylate phosphodiesterase BER92_12075 SM00267 diguanylate cyclase BER92_12090 SM00822 BER92_12090 BER92_12110 SM00853 MutL C terminal dimerisation domain BER92_12110 SM01340 BER92_12110 BER92_12115 SM00646 BER92_12115 BER92_12240 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. BER92_12365 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_12420 SM01160 BER92_12420 BER92_12530 SM00830 Chorismate mutase type II BER92_12545 SM00354 helix_turn _helix lactose operon repressor BER92_12580 SM01323 BER92_12580 BER92_12595 SM00344 helix_turn_helix ASNC type BER92_12660 SM00387 Histidine kinase-like ATPases BER92_12705 SM00098 Alkaline phosphatase homologues BER92_12710 SM00977 TilS substrate C-terminal domain BER92_12760 SM00316 Ribosomal protein S1-like RNA-binding domain BER92_12880 SM00382 ATPases associated with a variety of cellular activities BER92_13025 SM00382 ATPases associated with a variety of cellular activities BER92_13060 SM00363 S4 RNA-binding domain BER92_13070 SM00052 Putative diguanylate phosphodiesterase BER92_13070 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_13070 SM00091 PAS domain BER92_13070 SM00267 diguanylate cyclase BER92_13075 SM00487 DEAD-like helicases superfamily BER92_13075 SM00490 helicase superfamily c-terminal domain BER92_13145 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BER92_13145 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER92_13220 SM00645 Papain family cysteine protease BER92_13235 SM00487 DEAD-like helicases superfamily BER92_13235 SM00490 helicase superfamily c-terminal domain BER92_13235 SM00982 BER92_13235 BER92_13235 SM01058 CarD-like/TRCF domain BER92_13240 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BER92_13240 SM00534 ATPase domain of DNA mismatch repair MUTS family BER92_13280 SM00855 Phosphoglycerate mutase family BER92_13350 SM00267 diguanylate cyclase BER92_13420 SM00732 Likely ribonuclease with RNase H fold. BER92_13450 SM00382 ATPases associated with a variety of cellular activities BER92_13465 SM00411 bacterial (prokaryotic) histone like domain BER92_13485 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BER92_13500 SM00382 ATPases associated with a variety of cellular activities BER92_13530 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BER92_13535 SM00671 Sel1-like repeats. BER92_13645 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_13665 SM00382 ATPases associated with a variety of cellular activities BER92_13710 SM00924 MgtE intracellular N domain BER92_13755 SM00812 Alpha-L-fucosidase BER92_13760 SM00636 BER92_13760 BER92_13775 SM00758 BER92_13775 BER92_13775 SM01217 BER92_13775 BER92_13840 SM00788 Adenylosuccinate synthetase BER92_13850 SM00244 prohibitin homologues BER92_13855 SM00244 prohibitin homologues BER92_13860 SM00448 cheY-homologous receiver domain BER92_13865 SM00271 DnaJ molecular chaperone homology domain BER92_13945 SM00382 ATPases associated with a variety of cellular activities BER92_13995 SM00825 Beta-ketoacyl synthase BER92_14005 SM00822 BER92_14005 BER92_14010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BER92_14050 SM00382 ATPases associated with a variety of cellular activities BER92_14060 SM00460 Transglutaminase/protease-like homologues BER92_14075 SM00493 BER92_14075 BER92_14085 SM00382 ATPases associated with a variety of cellular activities BER92_14115 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_14120 SM00849 Metallo-beta-lactamase superfamily BER92_14145 SM00331 Sigma factor PP2C-like phosphatases BER92_14145 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BER92_14150 SM00479 BER92_14150 BER92_14165 SM00849 Metallo-beta-lactamase superfamily BER92_14170 SM00257 Lysin motif BER92_14180 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BER92_14180 SM01232 BER92_14180 BER92_14220 SM00481 DNA polymerase alpha chain like domain BER92_14260 SM00974 BER92_14260 BER92_14275 SM01092 CO dehydrogenase flavoprotein C-terminal domain BER92_14280 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER92_14365 SM00382 ATPases associated with a variety of cellular activities BER92_14365 SM00994 ClpX C4-type zinc finger BER92_14365 SM01086 C-terminal, D2-small domain, of ClpB protein BER92_14370 SM00382 ATPases associated with a variety of cellular activities BER92_14370 SM00464 Found in ATP-dependent protease La (LON) BER92_14375 SM00411 bacterial (prokaryotic) histone like domain BER92_14460 SM00382 ATPases associated with a variety of cellular activities BER92_14470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BER92_14515 SM00382 ATPases associated with a variety of cellular activities BER92_14585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BER92_14585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_14600 SM00421 helix_turn_helix, Lux Regulon BER92_14710 SM00387 Histidine kinase-like ATPases BER92_14710 SM00388 His Kinase A (phosphoacceptor) domain BER92_14710 SM00448 cheY-homologous receiver domain BER92_14715 SM00387 Histidine kinase-like ATPases BER92_14715 SM00388 His Kinase A (phosphoacceptor) domain BER92_14715 SM00448 cheY-homologous receiver domain BER92_14735 SM00448 cheY-homologous receiver domain BER92_14740 SM00387 Histidine kinase-like ATPases BER92_14740 SM00388 His Kinase A (phosphoacceptor) domain BER92_14770 SM00342 helix_turn_helix, arabinose operon control protein BER92_14775 SM00862 Transcriptional regulatory protein, C terminal BER92_14785 SM00382 ATPases associated with a variety of cellular activities BER92_14790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BER92_14835 SM00904 Riboflavin kinase BER92_14945 SM00244 prohibitin homologues BER92_14970 SM00478 endonuclease III BER92_14985 SM00421 helix_turn_helix, Lux Regulon BER92_14985 SM00448 cheY-homologous receiver domain BER92_15020 SM00387 Histidine kinase-like ATPases BER92_15020 SM00388 His Kinase A (phosphoacceptor) domain BER92_15025 SM00448 cheY-homologous receiver domain BER92_15025 SM00862 Transcriptional regulatory protein, C terminal BER92_15065 SM01060 BER92_15065 BER92_15075 SM00091 PAS domain BER92_15075 SM00342 helix_turn_helix, arabinose operon control protein BER92_15160 SM00382 ATPases associated with a variety of cellular activities BER92_15160 SM01086 C-terminal, D2-small domain, of ClpB protein BER92_15280 SM01329 BER92_15280 BER92_15305 SM00448 cheY-homologous receiver domain BER92_15305 SM00862 Transcriptional regulatory protein, C terminal BER92_15310 SM00387 Histidine kinase-like ATPases BER92_15310 SM00388 His Kinase A (phosphoacceptor) domain BER92_15330 SM00014 Acid phosphatase homologues BER92_15380 SM00369 Leucine-rich repeats, typical (most populated) subfamily BER92_15400 SM01149 BER92_15400 BER92_15425 SM00220 Serine/Threonine protein kinases, catalytic domain BER92_15460 SM01040 BRO family, N-terminal domain BER92_15475 SM00487 DEAD-like helicases superfamily BER92_15530 SM00528 Domain in histone-like proteins of HNS family BER92_15545 SM00382 ATPases associated with a variety of cellular activities BER92_15575 SM00882 Coenzyme A transferase BER92_15580 SM00882 Coenzyme A transferase BER92_15615 SM00893 Electron transfer flavoprotein domain BER92_15620 SM00893 Electron transfer flavoprotein domain BER92_15680 SM00382 ATPases associated with a variety of cellular activities BER92_15700 SM00116 Domain in cystathionine beta-synthase and other proteins. BER92_15740 SM00487 DEAD-like helicases superfamily BER92_15740 SM00490 helicase superfamily c-terminal domain BER92_15760 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_15805 SM00825 Beta-ketoacyl synthase BER92_15885 SM00830 Chorismate mutase type II BER92_15895 SM00382 ATPases associated with a variety of cellular activities BER92_15955 SM00986 Uracil DNA glycosylase superfamily BER92_15955 SM00987 UreE urease accessory protein, C-terminal domain BER92_15980 SM00382 ATPases associated with a variety of cellular activities BER92_15980 SM00930 BER92_15980 BER92_16055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BER92_16055 SM00091 PAS domain BER92_16055 SM00387 Histidine kinase-like ATPases BER92_16055 SM00388 His Kinase A (phosphoacceptor) domain BER92_16055 SM00448 cheY-homologous receiver domain BER92_16075 SM01005 Alanine racemase, C-terminal domain BER92_16270 SM00878 Biotin carboxylase C-terminal domain BER92_16285 SM00530 Helix-turn-helix XRE-family like proteins BER92_16305 SM00798 AICARFT/IMPCHase bienzyme BER92_16305 SM00851 MGS-like domain BER92_16310 SM01209 BER92_16310 BER92_16310 SM01210 BER92_16310 BER92_16335 SM00563 Phosphate acyltransferases BER92_16525 SM00487 DEAD-like helicases superfamily BER92_16525 SM00490 helicase superfamily c-terminal domain BER92_16525 SM00847 Helicase associated domain (HA2) Add an annotation BER92_16560 SM00829 Enoylreductase BER92_16640 SM00878 Biotin carboxylase C-terminal domain BER92_16750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_16750 SM00387 Histidine kinase-like ATPases BER92_16820 SM00387 Histidine kinase-like ATPases BER92_16855 SM01126 BER92_16855 BER92_16890 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BER92_16905 SM00849 Metallo-beta-lactamase superfamily BER92_16920 SM00382 ATPases associated with a variety of cellular activities BER92_16960 SM00861 Transketolase, pyrimidine binding domain BER92_16975 SM00028 Tetratricopeptide repeats BER92_16975 SM00327 von Willebrand factor (vWF) type A domain BER92_16980 SM00327 von Willebrand factor (vWF) type A domain BER92_16995 SM00382 ATPases associated with a variety of cellular activities BER92_17060 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BER92_17065 SM00986 Uracil DNA glycosylase superfamily BER92_17065 SM00987 UreE urease accessory protein, C-terminal domain BER92_17070 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_17135 SM00091 PAS domain BER92_17135 SM00138 Methyltransferase, chemotaxis proteins BER92_17135 SM00911 HWE histidine kinase BER92_17140 SM00448 cheY-homologous receiver domain BER92_17150 SM00382 ATPases associated with a variety of cellular activities BER92_17150 SM00448 cheY-homologous receiver domain BER92_17200 SM00382 ATPases associated with a variety of cellular activities BER92_17270 SM00382 ATPases associated with a variety of cellular activities BER92_17365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BER92_17365 SM00331 Sigma factor PP2C-like phosphatases BER92_17390 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BER92_17435 SM00867 YceI-like domain BER92_17510 SM00883 Chaperonin 10 Kd subunit BER92_17575 SM00642 Alpha-amylase domain BER92_17585 SM00642 Alpha-amylase domain BER92_17595 SM00642 Alpha-amylase domain BER92_17600 SM00642 Alpha-amylase domain BER92_17610 SM00267 diguanylate cyclase BER92_17655 SM00729 Elongator protein 3, MiaB family, Radical SAM BER92_17655 SM00876 Biotin and Thiamin Synthesis associated domain BER92_17715 SM01228 BER92_17715 BER92_17730 SM00090 RIO-like kinase BER92_17740 SM00420 helix_turn_helix, Deoxyribose operon repressor BER92_17740 SM01134 BER92_17740 BER92_17790 SM00563 Phosphate acyltransferases BER92_17900 SM00052 Putative diguanylate phosphodiesterase BER92_17900 SM00267 diguanylate cyclase BER92_17900 SM00448 cheY-homologous receiver domain BER92_17905 SM00387 Histidine kinase-like ATPases BER92_17905 SM00388 His Kinase A (phosphoacceptor) domain BER92_17905 SM00448 cheY-homologous receiver domain BER92_17960 SM00100 Cyclic nucleotide-monophosphate binding domain BER92_17960 SM00419 helix_turn_helix, cAMP Regulatory protein BER92_18035 SM01230 BER92_18035 BER92_18045 SM00046 Diacylglycerol kinase catalytic domain (presumed) BER92_18065 SM00271 DnaJ molecular chaperone homology domain BER92_18170 SM00644 BER92_18170 BER92_18180 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BER92_18215 SM01217 BER92_18215 BER92_18220 SM00905 Dihydroneopterin aldolase BER92_18245 SM00400 zinc finger BER92_18245 SM00493 BER92_18245 BER92_18245 SM00766 DNA primase DnaG DnaB-binding BER92_18320 SM00363 S4 RNA-binding domain BER92_18370 SM00470 ParB-like nuclease domain BER92_18395 SM01259 BER92_18395 BER92_18425 SM00836 DALR anticodon binding domain BER92_18425 SM01016 Arginyl tRNA synthetase N terminal dom BER92_18470 SM00823 Phosphopantetheine attachment site BER92_18470 SM00824 Thioesterase BER92_18480 SM00387 Histidine kinase-like ATPases BER92_18480 SM00388 His Kinase A (phosphoacceptor) domain BER92_18485 SM00448 cheY-homologous receiver domain BER92_18485 SM00862 Transcriptional regulatory protein, C terminal BER92_18510 SM00248 ankyrin repeats BER92_18515 SM01060 BER92_18515 BER92_18520 SM00491 BER92_18520 BER92_18545 SM01004 Delta-aminolevulinic acid dehydratase BER92_18590 SM01230 BER92_18590 BER92_18595 SM00938 Nitrogen regulatory protein P-II BER92_18605 SM00387 Histidine kinase-like ATPases BER92_18605 SM00388 His Kinase A (phosphoacceptor) domain BER92_18610 SM00382 ATPases associated with a variety of cellular activities BER92_18610 SM00448 cheY-homologous receiver domain BER92_18635 SM00028 Tetratricopeptide repeats BER92_18650 SM00563 Phosphate acyltransferases BER92_18660 SM00155 Phospholipase D. Active site motifs. BER92_18665 SM00867 YceI-like domain BER92_18670 SM00855 Phosphoglycerate mutase family BER92_18725 SM00382 ATPases associated with a variety of cellular activities BER92_18735 SM00382 ATPases associated with a variety of cellular activities BER92_18740 SM00344 helix_turn_helix ASNC type BER92_18765 SM00354 helix_turn _helix lactose operon repressor BER92_18805 SM00642 Alpha-amylase domain BER92_18810 SM00642 Alpha-amylase domain BER92_18815 SM00642 Alpha-amylase domain BER92_18900 SM00829 Enoylreductase BER92_18925 SM00836 DALR anticodon binding domain BER92_18935 SM00382 ATPases associated with a variety of cellular activities BER92_18995 SM00354 helix_turn _helix lactose operon repressor BER92_19175 SM00530 Helix-turn-helix XRE-family like proteins BER92_19200 SM00382 ATPases associated with a variety of cellular activities BER92_19265 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BER92_19265 SM00091 PAS domain BER92_19265 SM00267 diguanylate cyclase BER92_19335 SM00857 Resolvase, N terminal domain BER92_19445 SM00470 ParB-like nuclease domain BER92_19530 SM00857 Resolvase, N terminal domain BER92_19595 SM00857 Resolvase, N terminal domain BER92_19630 SM00966 SpoVT / AbrB like domain BER92_19650 SM00857 Resolvase, N terminal domain