locus-tag	class	description
BER93_00005	K02313	dnaA;chromosomal replication initiator protein
BER93_00010	K02338	dnaN;DNA polymerase III subunit beta [EC:2.7.7.7]
BER93_00020	K03629	recF;DNA replication and repair protein RecF
BER93_00025	K02470	gyrB;DNA gyrase subunit B [EC:5.6.2.2]
BER93_00035	K07387	K07387;metalloprotease [EC:3.4.24.-]
BER93_00045	K03832	tonB;periplasmic protein TonB
BER93_00050	K03561	exbB;biopolymer transport protein ExbB
BER93_00055	K03559	exbD;biopolymer transport protein ExbD
BER93_00060	K03559	exbD;biopolymer transport protein ExbD
BER93_00075	K03474	pdxJ;pyridoxine 5-phosphate synthase [EC:2.6.99.2]
BER93_00085	K06131	clsA_B;cardiolipin synthase A/B [EC:2.7.8.-]
BER93_00100	K06076	fadL;long-chain fatty acid transport protein
BER93_00115	K00058	serA, PHGDH;D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
BER93_00120	K03797	E3.4.21.102, prc, ctpA;carboxyl-terminal processing protease [EC:3.4.21.102]
BER93_00125	K22719	envC;murein hydrolase activator
BER93_00145	K00104	glcD;glycolate oxidase [EC:1.1.3.15]
BER93_00165	K00076	hdhA;7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
BER93_00175	K04773	sppA;protease IV [EC:3.4.21.-]
BER93_00180	K03327	TC.MATE, SLC47A, norM, mdtK, dinF;multidrug resistance protein, MATE family
BER93_00200	K04066	priA;primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
BER93_00215	K03089	rpoH;RNA polymerase sigma-32 factor
BER93_00220	K03648	UNG, UDG;uracil-DNA glycosylase [EC:3.2.2.27]
BER93_00225	K03412	cheB;two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
BER93_00235	K09812	ftsE;cell division transport system ATP-binding protein
BER93_00240	K03732	rhlB;ATP-dependent RNA helicase RhlB [EC:3.6.4.13]
BER93_00245	K03671	trxA;thioredoxin 1
BER93_00250	K03628	rho;transcription termination factor Rho
BER93_00285	K06879	queF;7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
BER93_00295	K07799	mdtA;membrane fusion protein, multidrug efflux system
BER93_00300	K07788	mdtB;multidrug efflux pump
BER93_00305	K07789	mdtC;multidrug efflux pump
BER93_00335	K03670	mdoG;periplasmic glucans biosynthesis protein
BER93_00340	K00857	tdk, TK;thymidine kinase [EC:2.7.1.21]
BER93_00345	K03656	rep;ATP-dependent DNA helicase Rep [EC:3.6.4.12]
BER93_00375	K09915	K09915;uncharacterized protein
BER93_00400	K00631	plsB;glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
BER93_00460	K07497	K07497;putative transposase
BER93_00510	K11927	rhlE;ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
BER93_00515	K00627	DLAT, aceF, pdhC;pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
BER93_00530	K00161	PDHA, pdhA;pyruvate dehydrogenase E1 component alpha subunit [EC:1.2.4.1]
BER93_00535	K00453	TDO2, kynA;tryptophan 2,3-dioxygenase [EC:1.13.11.11]
BER93_00540	K03305	TC.POT;proton-dependent oligopeptide transporter, POT family
BER93_00555	K22489	hosA;MarR family transcriptional regulator, temperature-dependent positive regulator of motility
BER93_00560	K00457	HPD, hppD;4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
BER93_00565	K00451	HGD, hmgA;homogentisate 1,2-dioxygenase [EC:1.13.11.5]
BER93_00590	K00077	panE, apbA;2-dehydropantoate 2-reductase [EC:1.1.1.169]
BER93_00600	K01992	ABC-2.P;ABC-2 type transport system permease protein
BER93_00605	K01990	ABC-2.A;ABC-2 type transport system ATP-binding protein
BER93_00610	K05784	benC-xylZ;benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
BER93_00625	K09697	natA;sodium transport system ATP-binding protein [EC:7.2.2.4]
BER93_00635	K03832	tonB;periplasmic protein TonB
BER93_00650	K11209	yghU, yfcG;GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
BER93_00740	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_00915	K03086	rpoD;RNA polymerase primary sigma factor
BER93_00920	K07560	dtd, DTD;D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
BER93_00930	K03823	pat;phosphinothricin acetyltransferase [EC:2.3.1.183]
BER93_00935	K01497	ribA, RIB1;GTP cyclohydrolase II [EC:3.5.4.25]
BER93_00970	K03500	rsmB, sun;16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
BER93_00975	K00604	MTFMT, fmt;methionyl-tRNA formyltransferase [EC:2.1.2.9]
BER93_00980	K01462	PDF, def;peptide deformylase [EC:3.5.1.88]
BER93_00990	K04096	smf;DNA processing protein
BER93_00995	K03747	smg;Smg protein
BER93_01010	K03168	topA;DNA topoisomerase I [EC:5.6.2.1]
BER93_01015	K07566	tsaC, rimN, SUA5;L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
BER93_01040	K16089	TC.FEV.OM2, cirA, cfrA, hmuR;outer membrane receptor for ferrienterochelin and colicins
BER93_01045	K07278	tamA;translocation and assembly module TamA
BER93_01050	K09800	tamB;translocation and assembly module TamB
BER93_01070	K00851	E2.7.1.12, gntK, idnK;gluconokinase [EC:2.7.1.12]
BER93_01075	K03292	TC.GPH;glycoside/pentoside/hexuronide:cation symporter, GPH family
BER93_01085	K11357	divJ;two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
BER93_01095	K05818	mhpR;IclR family transcriptional regulator, mhp operon transcriptional activator
BER93_01100	K02429	fucP;MFS transporter, FHS family, L-fucose permease
BER93_01105	K03534	rhaM;L-rhamnose mutarotase [EC:5.1.3.32]
BER93_01110	K18334	fucD;L-fuconate dehydratase [EC:4.2.1.68]
BER93_01115	K16856	ugl;ureidoglycolate lyase [EC:4.3.2.3]
BER93_01120	K18335	K18335;2-keto-3-deoxy-L-fuconate dehydrogenase [EC:1.1.1.-]
BER93_01140	K01895	ACSS, acs;acetyl-CoA synthetase [EC:6.2.1.1]
BER93_01155	K14393	actP;cation/acetate symporter
BER93_01160	K01142	E3.1.11.2, xthA;exodeoxyribonuclease III [EC:3.1.11.2]
BER93_01175	K06133	LYS5, acpT;4'-phosphopantetheinyl transferase [EC:2.7.8.-]
BER93_01185	K03501	gidB, rsmG;16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
BER93_01200	K02902	RP-L28, MRPL28, rpmB;large subunit ribosomal protein L28
BER93_01205	K02913	RP-L33, MRPL33, rpmG;large subunit ribosomal protein L33
BER93_01210	K06131	clsA_B;cardiolipin synthase A/B [EC:2.7.8.-]
BER93_01220	K03657	uvrD, pcrA;DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
BER93_01250	K03524	birA;BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
BER93_01255	K03525	coaX;type III pantothenate kinase [EC:2.7.1.33]
BER93_01280	K07483	K07483;transposase
BER93_01325	K01867	WARS, trpS;tryptophanyl-tRNA synthetase [EC:6.1.1.2]
BER93_01365	K00943	tmk, DTYMK;dTMP kinase [EC:2.7.4.9]
BER93_01385	K01255	CARP, pepA;leucyl aminopeptidase [EC:3.4.11.1]
BER93_01390	K01838	pgmB;beta-phosphoglucomutase [EC:5.4.2.6]
BER93_01415	K04771	degP, htrA;serine protease Do [EC:3.4.21.107]
BER93_01435	K07645	qseC;two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
BER93_01440	K07666	qseB;two-component system, OmpR family, response regulator QseB
BER93_01475	K07071	K07071;uncharacterized protein
BER93_01530	K14415	RTCB, rtcB;tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
BER93_01535	K22105	fabR;TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
BER93_01540	K15983	kshB;3-ketosteroid 9alpha-monooxygenase subunit B [EC:1.14.15.30]
BER93_01545	K22769	desA3;NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-]
BER93_01565	K07391	comM;magnesium chelatase family protein
BER93_01575	K04751	glnB;nitrogen regulatory protein P-II 1
BER93_01580	K01197	hya;hyaluronoglucosaminidase [EC:3.2.1.35]
BER93_01600	K00797	speE, SRM;spermidine synthase [EC:2.5.1.16]
BER93_01605	K01585	speA;arginine decarboxylase [EC:4.1.1.19]
BER93_01610	K07481	K07481;transposase, IS5 family
BER93_01630	K02335	polA;DNA polymerase I [EC:2.7.7.7]
BER93_01635	K00228	CPOX, hemF;coproporphyrinogen III oxidase [EC:1.3.3.3]
BER93_01665	K18239	fkbO, rapK;chorismatase [EC:3.3.2.13]
BER93_01675	K02078	acpP;acyl carrier protein
BER93_01685	K00655	plsC;1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
BER93_01690	K02372	fabZ;3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
BER93_01730	K00721	DPM1;dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
BER93_01740	K09458	fabF, OXSM, CEM1;3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
BER93_01745	K09902	K09902;uncharacterized protein
BER93_01760	K22934	E3.2.1.28;alpha,alpha-trehalase [EC:3.2.1.28]
BER93_01765	K00036	G6PD, zwf;glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
BER93_01770	K11745	kefC;glutathione-regulated potassium-efflux system ancillary protein KefC
BER93_01775	K01674	cah;carbonic anhydrase [EC:4.2.1.1]
BER93_01780	K06213	mgtE;magnesium transporter
BER93_01785	K09181	yfiQ;acetyltransferase
BER93_01795	K00525	E1.17.4.1A, nrdA, nrdE;ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
BER93_01800	K00526	E1.17.4.1B, nrdB, nrdF;ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
BER93_01820	K11068	hlyIII;hemolysin III
BER93_01825	K06877	K06877;DEAD/DEAH box helicase domain-containing protein
BER93_01860	K03296	TC.HAE1;hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
BER93_01865	K07789	mdtC;multidrug efflux pump
BER93_01885	K02528	ksgA;16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
BER93_01925	K07497	K07497;putative transposase
BER93_01930	K07497	K07497;putative transposase
BER93_01935	K07483	K07483;transposase
BER93_01940	K00209	fabV, ter;enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
BER93_01960	K00101	lldD;L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
BER93_01975	K00832	tyrB;aromatic-amino-acid transaminase [EC:2.6.1.57]
BER93_01980	K03841	FBP, fbp;fructose-1,6-bisphosphatase I [EC:3.1.3.11]
BER93_02010	K03426	E3.6.1.22, NUDT12, nudC;NAD+ diphosphatase [EC:3.6.1.22]
BER93_02050	K00632	fadA, fadI;acetyl-CoA acyltransferase [EC:2.3.1.16]
BER93_02085	K03071	secB;preprotein translocase subunit SecB
BER93_02090	K00057	gpsA;glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
BER93_02100	K00156	poxB;pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
BER93_02110	K03216	trmL, cspR;tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
BER93_02120	K22317	oleA;acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
BER93_02130	K07483	K07483;transposase
BER93_02135	K07497	K07497;putative transposase
BER93_02150	K03218	rlmB;23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
BER93_02160	K01626	E2.5.1.54, aroF, aroG, aroH;3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
BER93_02180	K06207	typA, bipA;GTP-binding protein
BER93_02185	K01802	E5.2.1.8;peptidylprolyl isomerase [EC:5.2.1.8]
BER93_02190	K00024	mdh;malate dehydrogenase [EC:1.1.1.37]
BER93_02215	K07481	K07481;transposase, IS5 family
BER93_02225	K00219	fadH;2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
BER93_02230	K00001	E1.1.1.1, adh;alcohol dehydrogenase [EC:1.1.1.1]
BER93_02235	K03286	TC.OOP;OmpA-OmpF porin, OOP family
BER93_02245	K06181	rluE;23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
BER93_02255	K00639	kbl, GCAT;glycine C-acetyltransferase [EC:2.3.1.29]
BER93_02260	K23163	sbp;sulfate/thiosulfate transport system substrate-binding protein
BER93_02265	K02046	cysU;sulfate/thiosulfate transport system permease protein
BER93_02270	K02047	cysW;sulfate/thiosulfate transport system permease protein
BER93_02275	K02045	cysA;sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
BER93_02285	K00060	tdh;threonine 3-dehydrogenase [EC:1.1.1.103]
BER93_02295	K01114	plc;phospholipase C [EC:3.1.4.3]
BER93_02300	K22305	psp;phosphoserine phosphatase [EC:3.1.3.3]
BER93_02335	K05844	rimK;ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
BER93_02345	K02483	K02483;two-component system, OmpR family, response regulator
BER93_02350	K07636	phoR;two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
BER93_02375	K14652	ribBA;3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
BER93_02380	K00794	ribH, RIB4;6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
BER93_02385	K03625	nusB;transcription antitermination protein NusB
BER93_02390	K00946	thiL;thiamine-monophosphate kinase [EC:2.7.4.16]
BER93_02425	K01919	gshA;glutamate--cysteine ligase [EC:6.3.2.2]
BER93_02430	K03978	engB;GTP-binding protein
BER93_02445	K03673	dsbA;thiol:disulfide interchange protein DsbA
BER93_02515	K11737	cycA;D-serine/D-alanine/glycine transporter
BER93_02525	K03284	corA;magnesium transporter
BER93_02545	K01194	TREH, treA, treF;alpha,alpha-trehalase [EC:3.2.1.28]
BER93_02570	K21023	mucR;diguanylate cyclase [EC:2.7.7.65]
BER93_02585	K01179	E3.2.1.4;endoglucanase [EC:3.2.1.4]
BER93_02590	K03321	TC.SULP;sulfate permease, SulP family
BER93_02600	K03669	mdoH;membrane glycosyltransferase [EC:2.4.1.-]
BER93_02615	K08083	algR;two-component system, LytTR family, response regulator AlgR
BER93_02620	K01749	hemC, HMBS;hydroxymethylbilane synthase [EC:2.5.1.61]
BER93_02645	K01322	PREP;prolyl oligopeptidase [EC:3.4.21.26]
BER93_02670	K01778	dapF;diaminopimelate epimerase [EC:5.1.1.7]
BER93_02680	K03733	xerC;integrase/recombinase XerC
BER93_02685	K01419	hslV, clpQ;ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
BER93_02690	K03667	hslU;ATP-dependent HslUV protease ATP-binding subunit HslU
BER93_02715	K03183	ubiE;demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
BER93_02745	K03569	mreB;rod shape-determining protein MreB and related proteins
BER93_02750	K03570	mreC;rod shape-determining protein MreC
BER93_02760	K05515	mrdA;penicillin-binding protein 2 [EC:3.4.16.4]
BER93_02765	K05837	rodA, mrdB;rod shape determining protein RodA
BER93_02775	K08305	mltB;membrane-bound lytic murein transglycosylase B [EC:4.2.2.-]
BER93_02780	K03642	rlpA;rare lipoprotein A
BER93_02785	K07258	dacC, dacA, dacD;serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
BER93_02795	K09158	K09158;uncharacterized protein
BER93_02800	K03801	lipB;lipoyl(octanoyl) transferase [EC:2.3.1.181]
BER93_02805	K03644	lipA;lipoyl synthase [EC:2.8.1.8]
BER93_02830	K03797	E3.4.21.102, prc, ctpA;carboxyl-terminal processing protease [EC:3.4.21.102]
BER93_02875	K00033	PGD, gnd, gntZ;6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
BER93_02890	K11354	cph1;two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
BER93_02895	K11355	rcp1;two-component system, chemotaxis family, response regulator Rcp1
BER93_02900	K07709	zraS, hydH;two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
BER93_02905	K00950	folK;2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
BER93_02910	K22606	E1.1.1.391;3beta-hydroxycholanate 3-dehydrogenase (NAD+) [EC:1.1.1.391]
BER93_02935	K07497	K07497;putative transposase
BER93_02940	K07483	K07483;transposase
BER93_02955	K03710	K03710;GntR family transcriptional regulator
BER93_02960	K02429	fucP;MFS transporter, FHS family, L-fucose permease
BER93_02965	K03604	purR;LacI family transcriptional regulator, purine nucleotide synthesis repressor
BER93_02970	K00820	glmS, GFPT;glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
BER93_02975	K01443	nagA, AMDHD2;N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
BER93_02990	K00121	frmA, ADH5, adhC;S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
BER93_02995	K03396	gfa;S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22]
BER93_03000	K01070	frmB, ESD, fghA;S-formylglutathione hydrolase [EC:3.1.2.12]
BER93_03025	K01465	URA4, pyrC;dihydroorotase [EC:3.5.2.3]
BER93_03070	K07497	K07497;putative transposase
BER93_03080	K07390	grxD, GLRX5;monothiol glutaredoxin
BER93_03085	K14659	nodB;chitooligosaccharide deacetylase [EC:3.5.1.-]
BER93_03120	K22944	cyaA;bifunctional hemolysin/adenylate cyclase [EC:4.6.1.1]
BER93_03130	K06949	rsgA, engC;ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
BER93_03150	K03292	TC.GPH;glycoside/pentoside/hexuronide:cation symporter, GPH family
BER93_03155	K03604	purR;LacI family transcriptional regulator, purine nucleotide synthesis repressor
BER93_03160	K00023	phbB;acetoacetyl-CoA reductase [EC:1.1.1.36]
BER93_03165	K03300	TC.CITMHS;citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
BER93_03175	K07774	tctD;two-component system, OmpR family, response regulator TctD
BER93_03180	K07645	qseC;two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
BER93_03185	K08478	pgtC;phosphoglycerate transport regulatory protein PgtC
BER93_03190	K07694	vraR;two-component system, NarL family, vancomycin resistance associated response regulator VraR
BER93_03200	K07483	K07483;transposase
BER93_03215	K07497	K07497;putative transposase
BER93_03225	K10125	dctB;two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
BER93_03235	K11103	dctA;aerobic C4-dicarboxylate transport protein
BER93_03240	K00029	E1.1.1.40, maeB;malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
BER93_03265	K12974	lpxP;KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
BER93_03270	K02527	kdtA, waaA;3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
BER93_03275	K12340	tolC;outer membrane protein
BER93_03280	K00573	E2.1.1.77, pcm;protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
BER93_03295	K01703	leuC, IPMI-L;3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
BER93_03300	K01704	leuD, IPMI-S;3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
BER93_03305	K00052	leuB, IMDH;3-isopropylmalate dehydrogenase [EC:1.1.1.85]
BER93_03310	K16089	TC.FEV.OM2, cirA, cfrA, hmuR;outer membrane receptor for ferrienterochelin and colicins
BER93_03320	K01649	leuA, IMS;2-isopropylmalate synthase [EC:2.3.3.13]
BER93_03325	K01754	E4.3.1.19, ilvA, tdcB;threonine dehydratase [EC:4.3.1.19]
BER93_03340	K00053	ilvC;ketol-acid reductoisomerase [EC:1.1.1.86]
BER93_03360	K03147	thiC;phosphomethylpyrimidine synthase [EC:4.1.99.17]
BER93_03370	K07481	K07481;transposase, IS5 family
BER93_03375	K21825	argR;AraC family transcriptional regulator, L-arginine-responsive activator
BER93_03390	K01507	ppa;inorganic pyrophosphatase [EC:3.6.1.1]
BER93_03420	K21071	pfk, pfp;ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
BER93_03425	K00939	adk, AK;adenylate kinase [EC:2.7.4.3]
BER93_03430	K02558	mpl;UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
BER93_03465	K07481	K07481;transposase, IS5 family
BER93_03475	K00821	argD;acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
BER93_03480	K01845	hemL;glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
BER93_03485	K00788	thiE;thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
BER93_03505	K01807	rpiA;ribose 5-phosphate isomerase A [EC:5.3.1.6]
BER93_03515	K01934	MTHFS;5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
BER93_03525	K09888	zapA;cell division protein ZapA
BER93_03535	K09895	K09895;uncharacterized protein
BER93_03540	K01262	pepP;Xaa-Pro aminopeptidase [EC:3.4.11.9]
BER93_03545	K01271	pepQ;Xaa-Pro dipeptidase [EC:3.4.13.9]
BER93_03565	K02428	rdgB;XTP/dITP diphosphohydrolase [EC:3.6.1.66]
BER93_03570	K00989	rph;ribonuclease PH [EC:2.7.7.56]
BER93_03580	K00942	E2.7.4.8, gmk;guanylate kinase [EC:2.7.4.8]
BER93_03585	K03060	rpoZ;DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
BER93_03590	K01139	spoT;GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
BER93_03600	K03655	recG;ATP-dependent DNA helicase RecG [EC:3.6.4.12]
BER93_03610	K01250	rihA;pyrimidine-specific ribonucleoside hydrolase [EC:3.2.-.-]
BER93_03615	K02909	RP-L31, rpmE;large subunit ribosomal protein L31
BER93_03620	K01647	CS, gltA;citrate synthase [EC:2.3.3.1]
BER93_03630	K05366	mrcA;penicillin-binding protein 1A [EC:2.4.1.129 3.4.16.4]
BER93_03655	K02666	pilQ;type IV pilus assembly protein PilQ
BER93_03660	K07481	K07481;transposase, IS5 family
BER93_03690	K07481	K07481;transposase, IS5 family
BER93_03695	K07460	yraN;putative endonuclease
BER93_03705	K07056	rsmI;16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
BER93_03735	K03925	mraZ;MraZ protein
BER93_03740	K03438	mraW, rsmH;16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
BER93_03745	K03586	ftsL;cell division protein FtsL
BER93_03750	K03587	ftsI;cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
BER93_03755	K01928	murE;UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
BER93_03760	K01929	murF;UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
BER93_03765	K01000	mraY;phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
BER93_03770	K03588	ftsW, spoVE;cell division protein FtsW
BER93_03775	K02563	murG;UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
BER93_03780	K01924	murC;UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
BER93_03785	K01921	ddl;D-alanine-D-alanine ligase [EC:6.3.2.4]
BER93_03790	K03589	ftsQ;cell division protein FtsQ
BER93_03795	K03590	ftsA;cell division protein FtsA
BER93_03800	K03531	ftsZ;cell division protein FtsZ
BER93_03805	K02535	lpxC;UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
BER93_03815	K19304	mepM;murein DD-endopeptidase [EC:3.4.24.-]
BER93_03820	K03070	secA;preprotein translocase subunit SecA [EC:7.4.2.8]
BER93_03830	K08320	nudG;(d)CTP diphosphatase [EC:3.6.1.65]
BER93_03840	K00297	metF, MTHFR;methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
BER93_03850	K12433	pks5;polyketide synthase 5
BER93_03875	K07497	K07497;putative transposase
BER93_03885	K00859	coaE;dephospho-CoA kinase [EC:2.7.1.24]
BER93_03890	K02654	pilD, pppA;leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
BER93_03905	K02652	pilB;type IV pilus assembly protein PilB
BER93_03920	K04095	fic;cell filamentation protein
BER93_03925	K02667	pilR, pehR;two-component system, NtrC family, response regulator PilR
BER93_03930	K02668	pilS, pehS;two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
BER93_03935	K01903	sucC;succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
BER93_03940	K01902	sucD;succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
BER93_03945	K01950	E6.3.5.1, NADSYN1, QNS1, nadE;NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
BER93_03950	K05807	bamD;outer membrane protein assembly factor BamD
BER93_03955	K06180	rluD;23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
BER93_03960	K05810	yfiH;polyphenol oxidase [EC:1.10.3.-]
BER93_03985	K00697	otsA;trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
BER93_03990	K22934	E3.2.1.28;alpha,alpha-trehalase [EC:3.2.1.28]
BER93_03995	K01087	otsB;trehalose 6-phosphate phosphatase [EC:3.1.3.12]
BER93_04000	K16092	btuB;vitamin B12 transporter
BER93_04030	K07461	K07461;putative endonuclease
BER93_04040	K07497	K07497;putative transposase
BER93_04055	K06920	queC;7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
BER93_04085	K03654	recQ;ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
BER93_04090	K04047	dps;starvation-inducible DNA-binding protein
BER93_04095	K03578	hrpA;ATP-dependent helicase HrpA [EC:3.6.4.13]
BER93_04100	K06139	pqqE;PqqA peptide cyclase [EC:1.21.98.4]
BER93_04105	K06138	pqqD;pyrroloquinoline quinone biosynthesis protein D
BER93_04110	K06137	pqqC;pyrroloquinoline-quinone synthase [EC:1.3.3.11]
BER93_04115	K06136	pqqB;pyrroloquinoline quinone biosynthesis protein B
BER93_04135	K05365	mrcB;penicillin-binding protein 1B [EC:2.4.1.129 3.4.16.4]
BER93_04145	K03722	dinG;ATP-dependent DNA helicase DinG [EC:3.6.4.12]
BER93_04150	K14742	tsaB;tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
BER93_04160	K01920	gshB;glutathione synthase [EC:6.3.2.3]
BER93_04165	K02657	pilG;twitching motility two-component system response regulator PilG
BER93_04170	K02658	pilH;twitching motility two-component system response regulator PilH
BER93_04175	K03408	cheW;purine-binding chemotaxis protein CheW
BER93_04180	K02660	pilJ;twitching motility protein PilJ
BER93_04200	K03790	rimJ;[ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
BER93_04215	K06201	cutC;copper homeostasis protein
BER93_04245	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_04280	K07483	K07483;transposase
BER93_04285	K07497	K07497;putative transposase
BER93_04290	K01873	VARS, valS;valyl-tRNA synthetase [EC:6.1.1.9]
BER93_04300	K01255	CARP, pepA;leucyl aminopeptidase [EC:3.4.11.1]
BER93_04310	K11720	lptG;lipopolysaccharide export system permease protein
BER93_04325	K04763	xerD;integrase/recombinase XerD
BER93_04330	K03981	dsbC;thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
BER93_04335	K01952	PFAS, purL;phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
BER93_04345	K21449	ata, sadA, emaA;trimeric autotransporter adhesin
BER93_04350	K14645	K14645;serine protease [EC:3.4.21.-]
BER93_04355	K02454	gspE;general secretion pathway protein E [EC:7.4.2.8]
BER93_04360	K02455	gspF;general secretion pathway protein F
BER93_04365	K02456	gspG;general secretion pathway protein G
BER93_04370	K02457	gspH;general secretion pathway protein H
BER93_04375	K02458	gspI;general secretion pathway protein I
BER93_04380	K02459	gspJ;general secretion pathway protein J
BER93_04385	K02460	gspK;general secretion pathway protein K
BER93_04390	K02461	gspL;general secretion pathway protein L
BER93_04395	K02462	gspM;general secretion pathway protein M
BER93_04400	K02463	gspN;general secretion pathway protein N
BER93_04405	K02453	gspD;general secretion pathway protein D
BER93_04445	K00763	pncB, NAPRT1;nicotinate phosphoribosyltransferase [EC:6.3.4.21]
BER93_04465	K01462	PDF, def;peptide deformylase [EC:3.5.1.88]
BER93_04470	K06020	ettA;energy-dependent translational throttle protein EttA
BER93_04480	K00600	glyA, SHMT;glycine hydroxymethyltransferase [EC:2.1.2.1]
BER93_04485	K07738	nrdR;transcriptional repressor NrdR
BER93_04495	K11752	ribD;diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
BER93_04515	K07481	K07481;transposase, IS5 family
BER93_04520	K13873	araA;L-arabinose 1-dehydrogenase [EC:1.1.1.376]
BER93_04555	K01251	E3.3.1.1, ahcY;adenosylhomocysteinase [EC:3.3.1.1]
BER93_04565	K01595	ppc;phosphoenolpyruvate carboxylase [EC:4.1.1.31]
BER93_04585	K00789	metK;S-adenosylmethionine synthetase [EC:2.5.1.6]
BER93_04595	K00598	tam;trans-aconitate 2-methyltransferase [EC:2.1.1.144]
BER93_04600	K05540	dusB;tRNA-dihydrouridine synthase B [EC:1.-.-.-]
BER93_04615	K00901	dgkA, DGK;diacylglycerol kinase (ATP) [EC:2.7.1.107]
BER93_04625	K07645	qseC;two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
BER93_04630	K07669	mprA;two-component system, OmpR family, response regulator MprA
BER93_04635	K10804	tesA;acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
BER93_04640	K02003	ABC.CD.A;putative ABC transport system ATP-binding protein
BER93_04680	K19265	gpr;L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
BER93_04685	K03317	TC.CNT;concentrative nucleoside transporter, CNT family
BER93_04705	K13292	lgt, umpA;phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
BER93_04710	K00560	thyA, TYMS;thymidylate synthase [EC:2.1.1.45]
BER93_04725	K01525	apaH;bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
BER93_04730	K06195	apaG;ApaG protein
BER93_04735	K02528	ksgA;16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
BER93_04740	K00097	pdxA;4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
BER93_04745	K03771	surA;peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
BER93_04750	K04744	lptD, imp, ostA;LPS-assembly protein
BER93_04760	K00798	MMAB, pduO;cob(I)alamin adenosyltransferase [EC:2.5.1.17]
BER93_04770	K03185	ubiH;2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
BER93_04775	K03184	ubiF;3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
BER93_04790	K02623	pcaQ;LysR family transcriptional regulator, pca operon transcriptional activator
BER93_04810	K01053	E3.1.1.17, gnl, RGN;gluconolactonase [EC:3.1.1.17]
BER93_04815	K00118	gfo;glucose-fructose oxidoreductase [EC:1.1.99.28]
BER93_04820	K06968	rlmM;23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
BER93_04835	K01886	QARS, glnS;glutaminyl-tRNA synthetase [EC:6.1.1.18]
BER93_04855	K02479	K02479;two-component system, NarL family, response regulator
BER93_04860	K07304	msrA;peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
BER93_04865	K00616	E2.2.1.2, talA, talB;transaldolase [EC:2.2.1.2]
BER93_04870	K06140	rnk;regulator of nucleoside diphosphate kinase
BER93_04875	K04761	oxyR;LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
BER93_04885	K03386	PRDX2_4, ahpC;peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
BER93_04890	K02493	hemK, prmC, HEMK;release factor glutamine methyltransferase [EC:2.1.1.297]
BER93_04915	K02335	polA;DNA polymerase I [EC:2.7.7.7]
BER93_04940	K03088	rpoE;RNA polymerase sigma-70 factor, ECF subfamily
BER93_04955	K00826	E2.6.1.42, ilvE;branched-chain amino acid aminotransferase [EC:2.6.1.42]
BER93_04970	K14645	K14645;serine protease [EC:3.4.21.-]
BER93_04975	K03976	ybaK, ebsC;Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
BER93_04990	K03809	wrbA;NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
BER93_04995	K07058	K07058;membrane protein
BER93_05000	K02199	ccmG, dsbE;cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
BER93_05010	K22468	ppk2;polyphosphate kinase [EC:2.7.4.1]
BER93_05015	K03638	moaB;molybdopterin adenylyltransferase [EC:2.7.7.75]
BER93_05025	K02835	prfA, MTRF1, MRF1;peptide chain release factor 1
BER93_05030	K02492	hemA;glutamyl-tRNA reductase [EC:1.2.1.70]
BER93_05040	K02494	lolB;outer membrane lipoprotein LolB
BER93_05045	K00919	ispE;4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
BER93_05055	K00948	PRPS, prsA;ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
BER93_05060	K02897	RP-L25, rplY;large subunit ribosomal protein L25
BER93_05065	K01056	PTH1, pth, spoVC;peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
BER93_05070	K06942	ychF;ribosome-binding ATPase
BER93_05090	K02358	tuf, TUFM;elongation factor Tu
BER93_05100	K03073	secE;preprotein translocase subunit SecE
BER93_05105	K02601	nusG;transcription termination/antitermination protein NusG
BER93_05110	K02867	RP-L11, MRPL11, rplK;large subunit ribosomal protein L11
BER93_05115	K02863	RP-L1, MRPL1, rplA;large subunit ribosomal protein L1
BER93_05120	K02864	RP-L10, MRPL10, rplJ;large subunit ribosomal protein L10
BER93_05125	K02935	RP-L7, MRPL12, rplL;large subunit ribosomal protein L7/L12
BER93_05130	K03043	rpoB;DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
BER93_05135	K03046	rpoC;DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
BER93_05140	K02950	RP-S12, MRPS12, rpsL;small subunit ribosomal protein S12
BER93_05145	K02992	RP-S7, MRPS7, rpsG;small subunit ribosomal protein S7
BER93_05150	K02355	fusA, GFM, EFG;elongation factor G
BER93_05155	K02358	tuf, TUFM;elongation factor Tu
BER93_05160	K02946	RP-S10, MRPS10, rpsJ;small subunit ribosomal protein S10
BER93_05165	K02906	RP-L3, MRPL3, rplC;large subunit ribosomal protein L3
BER93_05170	K02926	RP-L4, MRPL4, rplD;large subunit ribosomal protein L4
BER93_05175	K02892	RP-L23, MRPL23, rplW;large subunit ribosomal protein L23
BER93_05180	K02886	RP-L2, MRPL2, rplB;large subunit ribosomal protein L2
BER93_05185	K02965	RP-S19, rpsS;small subunit ribosomal protein S19
BER93_05190	K02890	RP-L22, MRPL22, rplV;large subunit ribosomal protein L22
BER93_05195	K02982	RP-S3, rpsC;small subunit ribosomal protein S3
BER93_05200	K02878	RP-L16, MRPL16, rplP;large subunit ribosomal protein L16
BER93_05205	K02904	RP-L29, rpmC;large subunit ribosomal protein L29
BER93_05210	K02961	RP-S17, MRPS17, rpsQ;small subunit ribosomal protein S17
BER93_05215	K02874	RP-L14, MRPL14, rplN;large subunit ribosomal protein L14
BER93_05220	K02895	RP-L24, MRPL24, rplX;large subunit ribosomal protein L24
BER93_05225	K02931	RP-L5, MRPL5, rplE;large subunit ribosomal protein L5
BER93_05230	K02954	RP-S14, MRPS14, rpsN;small subunit ribosomal protein S14
BER93_05235	K02994	RP-S8, rpsH;small subunit ribosomal protein S8
BER93_05240	K02933	RP-L6, MRPL6, rplF;large subunit ribosomal protein L6
BER93_05245	K02881	RP-L18, MRPL18, rplR;large subunit ribosomal protein L18
BER93_05250	K02988	RP-S5, MRPS5, rpsE;small subunit ribosomal protein S5
BER93_05255	K02907	RP-L30, MRPL30, rpmD;large subunit ribosomal protein L30
BER93_05260	K02876	RP-L15, MRPL15, rplO;large subunit ribosomal protein L15
BER93_05265	K03076	secY;preprotein translocase subunit SecY
BER93_05270	K02952	RP-S13, rpsM;small subunit ribosomal protein S13
BER93_05275	K02948	RP-S11, MRPS11, rpsK;small subunit ribosomal protein S11
BER93_05280	K02986	RP-S4, rpsD;small subunit ribosomal protein S4
BER93_05285	K03040	rpoA;DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
BER93_05290	K02879	RP-L17, MRPL17, rplQ;large subunit ribosomal protein L17
BER93_05295	K03611	dsbB;disulfide bond formation protein DsbB
BER93_05340	K03282	mscL;large conductance mechanosensitive channel
BER93_05345	K16165	nagK;fumarylpyruvate hydrolase [EC:3.7.1.20]
BER93_05360	K03439	trmB, METTL1, TRM8;tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
BER93_05365	K03149	thiG;thiazole synthase [EC:2.8.1.10]
BER93_05430	K07497	K07497;putative transposase
BER93_05435	K07483	K07483;transposase
BER93_05585	K07483	K07483;transposase
BER93_05615	K02167	betI;TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
BER93_05620	K22316	rhnA-cobC;ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
BER93_05625	K17758	nnr;ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
BER93_05655	K00384	trxB, TRR;thioredoxin reductase (NADPH) [EC:1.8.1.9]
BER93_05675	K09761	rsmE;16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
BER93_05685	K08312	nudE;ADP-ribose diphosphatase [EC:3.6.1.-]
BER93_05690	K01082	cysQ, MET22, BPNT1;3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
BER93_05695	K04765	mazG;nucleoside triphosphate diphosphatase [EC:3.6.1.9]
BER93_05700	K00605	gcvT, AMT;aminomethyltransferase [EC:2.1.2.10]
BER93_05705	K02437	gcvH, GCSH;glycine cleavage system H protein
BER93_05730	K06445	fadE;acyl-CoA dehydrogenase [EC:1.3.99.-]
BER93_05775	K07497	K07497;putative transposase
BER93_05785	K04083	hslO;molecular chaperone Hsp33
BER93_05790	K03814	mtgA;monofunctional glycosyltransferase [EC:2.4.1.129]
BER93_05795	K20534	gtrB, csbB;polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
BER93_05800	K00088	IMPDH, guaB;IMP dehydrogenase [EC:1.1.1.205]
BER93_05805	K07290	yhjG;AsmA family protein
BER93_05810	K11068	hlyIII;hemolysin III
BER93_05815	K02837	prfC;peptide chain release factor 3
BER93_05830	K00641	metX;homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
BER93_05835	K01739	metB;cystathionine gamma-synthase [EC:2.5.1.48]
BER93_05840	K12525	metL;bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
BER93_05845	K10222	bphD;2,6-dioxo-6-phenylhexa-3-enoate hydrolase [EC:3.7.1.8]
BER93_05855	K01760	metC;cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
BER93_05910	K03106	SRP54, ffh;signal recognition particle subunit SRP54 [EC:3.6.5.4]
BER93_05920	K00459	ncd2, npd;nitronate monooxygenase [EC:1.13.12.16]
BER93_05930	K02959	RP-S16, MRPS16, rpsP;small subunit ribosomal protein S16
BER93_05935	K02860	rimM;16S rRNA processing protein RimM
BER93_05940	K00554	trmD;tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
BER93_05945	K02884	RP-L19, MRPL19, rplS;large subunit ribosomal protein L19
BER93_05985	K21088	ydaM;diguanylate cyclase [EC:2.7.7.65]
BER93_06000	K01868	TARS, thrS;threonyl-tRNA synthetase [EC:6.1.1.3]
BER93_06005	K02520	infC, MTIF3;translation initiation factor IF-3
BER93_06010	K02916	RP-L35, MRPL35, rpmI;large subunit ribosomal protein L35
BER93_06015	K02887	RP-L20, MRPL20, rplT;large subunit ribosomal protein L20
BER93_06020	K01889	FARSA, pheS;phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
BER93_06025	K01890	FARSB, pheT;phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
BER93_06030	K04764	ihfA, himA;integration host factor subunit alpha
BER93_06075	K13657	gumH, aceA;alpha-1,3-mannosyltransferase [EC:2.4.1.252]
BER93_06080	K13658	gumI;beta-1,4-mannosyltransferase [EC:2.4.1.251]
BER93_06090	K13659	gumK;2-beta-glucuronyltransferase [EC:2.4.1.264]
BER93_06095	K16563	exoV;succinoglycan biosynthesis protein ExoV
BER93_06100	K02852	wecG, rffM;UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
BER93_06110	K01662	dxs;1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
BER93_06125	K20035	dmdC;3-(methylthio)propanoyl-CoA dehydrogenase [EC:1.3.8.-]
BER93_06135	K03098	APOD;apolipoprotein D and lipocalin family protein
BER93_06155	K05984	cho;excinuclease Cho [EC:3.1.25.-]
BER93_06195	K03575	mutY;A/G-specific adenine glycosylase [EC:3.2.2.31]
BER93_06200	K03110	ftsY;fused signal recognition particle receptor
BER93_06210	K12658	lhpA;4-hydroxyproline epimerase [EC:5.1.1.8]
BER93_06215	K03153	thiO;glycine oxidase [EC:1.4.3.19]
BER93_06230	K01714	dapA;4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
BER93_06240	K01271	pepQ;Xaa-Pro dipeptidase [EC:3.4.13.9]
BER93_06280	K07481	K07481;transposase, IS5 family
BER93_06290	K05998	E3.4.21.100;pseudomonalisin [EC:3.4.21.100]
BER93_06300	K16092	btuB;vitamin B12 transporter
BER93_06345	K07497	K07497;putative transposase
BER93_06360	K08973	K08973;putative membrane protein
BER93_06365	K01962	accA;acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
BER93_06370	K02337	dnaE;DNA polymerase III subunit alpha [EC:2.7.7.7]
BER93_06375	K03470	rnhB;ribonuclease HII [EC:3.1.26.4]
BER93_06380	K00748	lpxB;lipid-A-disaccharide synthase [EC:2.4.1.182]
BER93_06385	K00677	lpxA;UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
BER93_06390	K02372	fabZ;3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
BER93_06395	K02536	lpxD;UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
BER93_06405	K07277	SAM50, TOB55, bamA;outer membrane protein insertion porin family
BER93_06410	K11749	rseP;regulator of sigma E protease [EC:3.4.24.-]
BER93_06415	K00099	dxr;1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
BER93_06420	K00981	E2.7.7.41, CDS1, CDS2, cdsA;phosphatidate cytidylyltransferase [EC:2.7.7.41]
BER93_06425	K00806	uppS;undecaprenyl diphosphate synthase [EC:2.5.1.31]
BER93_06430	K02838	frr, MRRF, RRF;ribosome recycling factor
BER93_06435	K09903	pyrH;uridylate kinase [EC:2.7.4.22]
BER93_06445	K02357	tsf, TSFM;elongation factor Ts
BER93_06450	K02967	RP-S2, MRPS2, rpsB;small subunit ribosomal protein S2
BER93_06485	K01265	map;methionyl aminopeptidase [EC:3.4.11.18]
BER93_06490	K00990	glnD;[protein-PII] uridylyltransferase [EC:2.7.7.59]
BER93_06495	K00674	dapD;2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
BER93_06505	K01439	dapE;succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
BER93_06510	K01953	asnB, ASNS;asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
BER93_06520	K16090	fiu;catecholate siderophore receptor
BER93_06535	K03594	bfr;bacterioferritin [EC:1.16.3.1]
BER93_06540	K00569	TPMT, tpmT;thiopurine S-methyltransferase [EC:2.1.1.67]
BER93_06545	K02621	parC;topoisomerase IV subunit A [EC:5.6.2.2]
BER93_06560	K03543	emrA;membrane fusion protein, multidrug efflux system
BER93_06565	K03446	emrB;MFS transporter, DHA2 family, multidrug resistance protein
BER93_06615	K20207	gpx;hydroperoxy fatty acid reductase [EC:1.11.1.22]
BER93_06635	K01676	E4.2.1.2A, fumA, fumB;fumarate hydratase, class I [EC:4.2.1.2]
BER93_06640	K01673	cynT, can;carbonic anhydrase [EC:4.2.1.1]
BER93_06660	K03704	cspA;cold shock protein
BER93_06675	K22132	tcdA;tRNA threonylcarbamoyladenosine dehydratase
BER93_06680	K03424	tatD;TatD DNase family protein [EC:3.1.21.-]
BER93_06705	K01953	asnB, ASNS;asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
BER93_06715	K02314	dnaB;replicative DNA helicase [EC:3.6.4.12]
BER93_06720	K01669	phrB;deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
BER93_06740	K07483	K07483;transposase
BER93_06760	K07110	ramB;XRE family transcriptional regulator, fatty acid utilization regulator
BER93_06765	K00140	mmsA, iolA, ALDH6A1;malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
BER93_06775	K01715	crt;enoyl-CoA hydratase [EC:4.2.1.17]
BER93_06780	K01782	fadJ;3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
BER93_06785	K00020	mmsB, HIBADH;3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
BER93_06790	K16264	czcD, zitB;cobalt-zinc-cadmium efflux system protein
BER93_06795	K01782	fadJ;3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
BER93_06800	K03088	rpoE;RNA polymerase sigma-70 factor, ECF subfamily
BER93_06810	K04771	degP, htrA;serine protease Do [EC:3.4.21.107]
BER93_06820	K07481	K07481;transposase, IS5 family
BER93_06830	K07483	K07483;transposase
BER93_06835	K07497	K07497;putative transposase
BER93_06855	K06189	corC;magnesium and cobalt transporter
BER93_06865	K07042	ybeY, yqfG;probable rRNA maturation factor
BER93_06870	K06217	phoH, phoL;phosphate starvation-inducible protein PhoH and related proteins
BER93_06875	K06168	miaB;tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
BER93_06890	K00411	UQCRFS1, RIP1, petA;ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
BER93_06895	K00412	CYTB, petB;ubiquinol-cytochrome c reductase cytochrome b subunit
BER93_06900	K00413	CYC1, CYT1, petC;ubiquinol-cytochrome c reductase cytochrome c1 subunit
BER93_06905	K03599	sspA, mglA;stringent starvation protein A
BER93_06910	K03600	sspB;stringent starvation protein B
BER93_06920	K03724	lhr;ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
BER93_06925	K03652	MPG;DNA-3-methyladenine glycosylase [EC:3.2.2.21]
BER93_06955	K03684	rnd;ribonuclease D [EC:3.1.13.5]
BER93_06960	K13444	SUMF1, FGE;formylglycine-generating enzyme [EC:1.8.3.7]
BER93_06975	K03596	lepA;GTP-binding protein LepA
BER93_06980	K03100	lepB;signal peptidase I [EC:3.4.21.89]
BER93_06990	K03685	rnc, DROSHA, RNT1;ribonuclease III [EC:3.1.26.3]
BER93_06995	K03595	era, ERAL1;GTPase
BER93_07000	K03584	recO;DNA repair protein RecO (recombination protein O)
BER93_07010	K03215	rumA;23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
BER93_07020	K06955	K06955;uncharacterized protein
BER93_07025	K06876	K06876;deoxyribodipyrimidine photolyase-related protein
BER93_07030	K01207	nagZ;beta-N-acetylhexosaminidase [EC:3.2.1.52]
BER93_07035	K00760	hprT, hpt, HPRT1;hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
BER93_07040	K19696	mtiP;5'-methylthioinosine phosphorylase [EC:2.4.2.44]
BER93_07045	K03704	cspA;cold shock protein
BER93_07055	K03724	lhr;ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
BER93_07060	K10747	LIG1;DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
BER93_07070	K10747	LIG1;DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
BER93_07100	K00626	E2.3.1.9, atoB;acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
BER93_07105	K07481	K07481;transposase, IS5 family
BER93_07120	K07043	K07043;uncharacterized protein
BER93_07140	K06915	K06915;uncharacterized protein
BER93_07160	K06173	truA, PUS1;tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
BER93_07165	K01817	trpF;phosphoribosylanthranilate isomerase [EC:5.3.1.24]
BER93_07180	K07481	K07481;transposase, IS5 family
BER93_07195	K01696	trpB;tryptophan synthase beta chain [EC:4.2.1.20]
BER93_07200	K01695	trpA;tryptophan synthase alpha chain [EC:4.2.1.20]
BER93_07205	K01963	accD;acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
BER93_07210	K03431	glmM;phosphoglucosamine mutase [EC:5.4.2.10]
BER93_07225	K21023	mucR;diguanylate cyclase [EC:2.7.7.65]
BER93_07240	K15373	isfD;sulfoacetaldehyde reductase [EC:1.1.1.313]
BER93_07245	K01803	TPI, tpiA;triosephosphate isomerase (TIM) [EC:5.3.1.1]
BER93_07260	K00330	nuoA;NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
BER93_07265	K00331	nuoB;NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
BER93_07270	K00332	nuoC;NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
BER93_07275	K00333	nuoD;NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
BER93_07280	K00334	nuoE;NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
BER93_07285	K00335	nuoF;NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
BER93_07290	K00336	nuoG;NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
BER93_07295	K00337	nuoH;NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
BER93_07300	K00338	nuoI;NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
BER93_07310	K00340	nuoK;NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
BER93_07315	K00341	nuoL;NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
BER93_07325	K00343	nuoN;NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
BER93_07335	K09748	rimP;ribosome maturation factor RimP
BER93_07340	K02600	nusA;transcription termination/antitermination protein NusA
BER93_07345	K02519	infB, MTIF2;translation initiation factor IF-2
BER93_07350	K02834	rbfA;ribosome-binding factor A
BER93_07355	K03177	truB, PUS4, TRUB1;tRNA pseudouridine55 synthase [EC:5.4.99.25]
BER93_07360	K02956	RP-S15, MRPS15, rpsO;small subunit ribosomal protein S15
BER93_07365	K00962	pnp, PNPT1;polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
BER93_07385	K00767	nadC, QPRT;nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
BER93_07395	K01588	purE;5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
BER93_07400	K01589	purK;5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
BER93_07405	K04564	SOD2;superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
BER93_07410	K07390	grxD, GLRX5;monothiol glutaredoxin
BER93_07430	K06966	ppnN;pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
BER93_07440	K02478	K02478;two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
BER93_07450	K02674	pilY1;type IV pilus assembly protein PilY1
BER93_07460	K13815	rpfG;two-component system, response regulator RpfG
BER93_07475	K09817	znuC;zinc transport system ATP-binding protein [EC:7.2.2.-]
BER93_07485	K08177	oxlT;MFS transporter, OFA family, oxalate/formate antiporter
BER93_07490	K02379	fdhD;FdhD protein
BER93_07510	K07483	K07483;transposase
BER93_07515	K07497	K07497;putative transposase
BER93_07525	K09471	puuB, ordL;gamma-glutamylputrescine oxidase [EC:1.4.3.-]
BER93_07530	K09470	puuA;gamma-glutamylputrescine synthase [EC:6.3.1.11]
BER93_07540	K11073	potF;putrescine transport system substrate-binding protein
BER93_07545	K03543	emrA;membrane fusion protein, multidrug efflux system
BER93_07550	K03446	emrB;MFS transporter, DHA2 family, multidrug resistance protein
BER93_07560	K11076	potG;putrescine transport system ATP-binding protein
BER93_07565	K11075	potH;putrescine transport system permease protein
BER93_07570	K11074	potI;putrescine transport system permease protein
BER93_07575	K00135	gabD;succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
BER93_07595	K18138	acrB, mexB, adeJ, smeE, mtrD, cmeB;multidrug efflux pump
BER93_07600	K03585	acrA, mexA, adeI, smeD, mtrC, cmeA;membrane fusion protein, multidrug efflux system
BER93_07610	K15371	GDH2;glutamate dehydrogenase [EC:1.4.1.2]
BER93_07635	K18376	hrpF;type III secretion translocon protein HrpF
BER93_07655	K07746	parD1_3_4;antitoxin ParD1/3/4
BER93_07680	K00425	cydA;cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
BER93_07690	K07481	K07481;transposase, IS5 family
BER93_07695	K07483	K07483;transposase
BER93_07700	K07497	K07497;putative transposase
BER93_07705	K07497	K07497;putative transposase
BER93_07715	K03702	uvrB;excinuclease ABC subunit B
BER93_07745	K03195	virB10, lvhB10;type IV secretion system protein VirB10
BER93_07750	K03196	virB11, lvhB11;type IV secretion system protein VirB11 [EC:7.4.2.8]
BER93_07755	K03194	virB1;type IV secretion system protein VirB1
BER93_07770	K03199	virB4, lvhB4;type IV secretion system protein VirB4 [EC:7.4.2.8]
BER93_07835	K03199	virB4, lvhB4;type IV secretion system protein VirB4 [EC:7.4.2.8]
BER93_07875	K07481	K07481;transposase, IS5 family
BER93_07960	K03664	smpB;SsrA-binding protein
BER93_07970	K09801	K09801;uncharacterized protein
BER93_07975	K06186	bamE, smpA;outer membrane protein assembly factor BamE
BER93_07980	K03711	fur, zur, furB;Fur family transcriptional regulator, ferric uptake regulator
BER93_07985	K03631	recN;DNA repair protein RecN (Recombination protein N)
BER93_07990	K03705	hrcA;heat-inducible transcriptional repressor
BER93_07995	K03687	GRPE;molecular chaperone GrpE
BER93_08000	K04043	dnaK, HSPA9;molecular chaperone DnaK
BER93_08005	K03686	dnaJ;molecular chaperone DnaJ
BER93_08010	K00868	pdxK, pdxY;pyridoxine kinase [EC:2.7.1.35]
BER93_08035	K11004	hlyB, cyaB;ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
BER93_08050	K11085	msbA;ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
BER93_08070	K00658	DLST, sucB;2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
BER93_08085	K18850	ycfD;50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
BER93_08090	K01756	purB, ADSL;adenylosuccinate lyase [EC:4.3.2.2]
BER93_08095	K01679	E4.2.1.2B, fumC, FH;fumarate hydratase, class II [EC:4.2.1.2]
BER93_08105	K07483	K07483;transposase
BER93_08110	K07497	K07497;putative transposase
BER93_08115	K07497	K07497;putative transposase
BER93_08120	K07481	K07481;transposase, IS5 family
BER93_08145	K01990	ABC-2.A;ABC-2 type transport system ATP-binding protein
BER93_08150	K07979	ytrA;GntR family transcriptional regulator
BER93_08160	K20207	gpx;hydroperoxy fatty acid reductase [EC:1.11.1.22]
BER93_08165	K03772	fkpA;FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
BER93_08170	K00012	UGDH, ugd;UDPglucose 6-dehydrogenase [EC:1.1.1.22]
BER93_08175	K03745	slyX;SlyX protein
BER93_08190	K02529	lacI, galR;LacI family transcriptional regulator
BER93_08195	K02429	fucP;MFS transporter, FHS family, L-fucose permease
BER93_08200	K00847	E2.7.1.4, scrK;fructokinase [EC:2.7.1.4]
BER93_08210	K00548	metH, MTR;5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
BER93_08220	K03183	ubiE;demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
BER93_08225	K00248	ACADS, bcd;butyryl-CoA dehydrogenase [EC:1.3.8.1]
BER93_08240	K12573	rnr, vacB;ribonuclease R [EC:3.1.13.1]
BER93_08245	K03218	rlmB;23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
BER93_08255	K03683	rnt;ribonuclease T [EC:3.1.13.-]
BER93_08260	K02039	phoU;phosphate transport system protein
BER93_08265	K02036	pstB;phosphate transport system ATP-binding protein [EC:7.3.2.1]
BER93_08270	K02038	pstA;phosphate transport system permease protein
BER93_08275	K02037	pstC;phosphate transport system permease protein
BER93_08280	K02040	pstS;phosphate transport system substrate-binding protein
BER93_08290	K02040	pstS;phosphate transport system substrate-binding protein
BER93_08310	K01673	cynT, can;carbonic anhydrase [EC:4.2.1.1]
BER93_08315	K03321	TC.SULP;sulfate permease, SulP family
BER93_08320	K10773	NTH;endonuclease III [EC:4.2.99.18]
BER93_08345	K01011	TST, MPST, sseA;thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
BER93_08380	K12297	rlmL, rlmK;23S rRNA (guanine2445-N2)-methyltransferase / 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.173 2.1.1.264]
BER93_08385	K00858	ppnK, NADK;NAD+ kinase [EC:2.7.1.23]
BER93_08395	K07481	K07481;transposase, IS5 family
BER93_08410	K01141	sbcB, exoI;exodeoxyribonuclease I [EC:3.1.11.1]
BER93_08415	K00486	KMO;kynurenine 3-monooxygenase [EC:1.14.13.9]
BER93_08420	K01556	KYNU, kynU;kynureninase [EC:3.7.1.3]
BER93_08430	K00452	HAAO;3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
BER93_08435	K01673	cynT, can;carbonic anhydrase [EC:4.2.1.1]
BER93_08460	K01893	NARS, asnS;asparaginyl-tRNA synthetase [EC:6.1.1.22]
BER93_08465	K13628	iscA;iron-sulfur cluster assembly protein
BER93_08470	K02990	RP-S6, MRPS6, rpsF;small subunit ribosomal protein S6
BER93_08475	K02963	RP-S18, MRPS18, rpsR;small subunit ribosomal protein S18
BER93_08480	K02939	RP-L9, MRPL9, rplI;large subunit ribosomal protein L9
BER93_08485	K03529	smc;chromosome segregation protein
BER93_08490	K03528	zipA;cell division protein ZipA
BER93_08495	K01972	E6.5.1.2, ligA, ligB;DNA ligase (NAD+) [EC:6.5.1.2]
BER93_08500	K04568	epmA, poxA;elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
BER93_08515	K08963	mtnA;methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
BER93_08535	K01712	hutU, UROC1;urocanate hydratase [EC:4.2.1.49]
BER93_08545	K01745	hutH, HAL;histidine ammonia-lyase [EC:4.3.1.3]
BER93_08550	K01468	hutI, AMDHD1;imidazolonepropionase [EC:3.5.2.7]
BER93_08580	K17247	msrQ;methionine sulfoxide reductase heme-binding subunit
BER93_08585	K01613	psd, PISD;phosphatidylserine decarboxylase [EC:4.1.1.65]
BER93_08595	K07320	prmB;ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
BER93_08605	K01736	aroC;chorismate synthase [EC:4.2.3.5]
BER93_08610	K00090	ghrB;glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BER93_08625	K05874	tsr;methyl-accepting chemotaxis protein I, serine sensor receptor
BER93_08630	K08482	kaiC;circadian clock protein KaiC
BER93_08640	K07497	K07497;putative transposase
BER93_08660	K02200	ccmH;cytochrome c-type biogenesis protein CcmH
BER93_08665	K02198	ccmF;cytochrome c-type biogenesis protein CcmF
BER93_08685	K03088	rpoE;RNA polymerase sigma-70 factor, ECF subfamily
BER93_08725	K03699	tlyC;putative hemolysin
BER93_08750	K02622	parE;topoisomerase IV subunit B [EC:5.6.2.2]
BER93_08760	K01937	pyrG, CTPS;CTP synthase [EC:6.3.4.2]
BER93_08765	K01627	kdsA;2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
BER93_08770	K01689	ENO, eno;enolase [EC:4.2.1.11]
BER93_08775	K05589	ftsB;cell division protein FtsB
BER93_08780	K00991	ispD;2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
BER93_08785	K01770	ispF;2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
BER93_08790	K06176	truD, PUS7;tRNA pseudouridine13 synthase [EC:5.4.99.27]
BER93_08800	K03787	surE;5'-nucleotidase [EC:3.1.3.5]
BER93_08805	K00573	E2.1.1.77, pcm;protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
BER93_08815	K06194	nlpD;lipoprotein NlpD
BER93_08855	K00641	metX;homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
BER93_08865	K02200	ccmH;cytochrome c-type biogenesis protein CcmH
BER93_08870	K02200	ccmH;cytochrome c-type biogenesis protein CcmH
BER93_08875	K02199	ccmG, dsbE;cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
BER93_08880	K02198	ccmF;cytochrome c-type biogenesis protein CcmF
BER93_08885	K02197	ccmE;cytochrome c-type biogenesis protein CcmE
BER93_08895	K02195	ccmC;heme exporter protein C
BER93_08900	K02194	ccmB;heme exporter protein B
BER93_08905	K02193	ccmA;heme exporter protein A [EC:7.6.2.5]
BER93_08910	K14287	ybdL;methionine transaminase [EC:2.6.1.88]
BER93_08930	K06178	rluB;23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
BER93_08935	K06024	scpB;segregation and condensation protein B
BER93_08940	K05896	scpA;segregation and condensation protein A
BER93_08945	K09780	K09780;uncharacterized protein
BER93_08955	K02529	lacI, galR;LacI family transcriptional regulator
BER93_08975	K10118	msmF;raffinose/stachyose/melibiose transport system permease protein
BER93_08980	K17236	araQ;arabinosaccharide transport system permease protein
BER93_09015	K10536	aguA;agmatine deiminase [EC:3.5.3.12]
BER93_09025	K00945	cmk;CMP/dCMP kinase [EC:2.7.4.25]
BER93_09030	K02945	RP-S1, rpsA;small subunit ribosomal protein S1
BER93_09035	K05788	ihfB, himD;integration host factor subunit beta
BER93_09045	K19804	lapB;lipopolysaccharide assembly protein B
BER93_09060	K00963	UGP2, galU, galF;UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
BER93_09065	K11745	kefC;glutathione-regulated potassium-efflux system ancillary protein KefC
BER93_09070	K07497	K07497;putative transposase
BER93_09100	K01491	folD;methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
BER93_09110	K01951	guaA, GMPS;GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
BER93_09155	K21495	fitA;antitoxin FitA
BER93_09160	K07062	fitB;toxin FitB [EC:3.1.-.-]
BER93_09170	K07483	K07483;transposase
BER93_09180	K07497	K07497;putative transposase
BER93_09210	K01892	HARS, hisS;histidyl-tRNA synthetase [EC:6.1.1.21]
BER93_09220	K00765	hisG;ATP phosphoribosyltransferase [EC:2.4.2.17]
BER93_09225	K00013	hisD;histidinol dehydrogenase [EC:1.1.1.23]
BER93_09230	K00817	hisC;histidinol-phosphate aminotransferase [EC:2.6.1.9]
BER93_09235	K01089	hisB;imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
BER93_09240	K02501	hisH;imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
BER93_09245	K01814	hisA;phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
BER93_09250	K02500	hisF;imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
BER93_09255	K11755	hisIE;phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19]
BER93_09280	K09880	mtnC, ENOPH1;enolase-phosphatase E1 [EC:3.1.3.77]
BER93_09285	K08967	mtnD, mtnZ, ADI1;1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
BER93_09290	K08964	mtnB;methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
BER93_09310	K00058	serA, PHGDH;D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
BER93_09315	K00104	glcD;glycolate oxidase [EC:1.1.3.15]
BER93_09330	K02356	efp;elongation factor P
BER93_09340	K01640	E4.1.3.4, HMGCL, hmgL;hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
BER93_09345	K01692	paaF, echA;enoyl-CoA hydratase [EC:4.2.1.17]
BER93_09355	K04759	feoB;ferrous iron transport protein B
BER93_09370	K00215	dapB;4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
BER93_09375	K01956	carA, CPA1;carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
BER93_09390	K01955	carB, CPA2;carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
BER93_09395	K03624	greA;transcription elongation factor GreA
BER93_09405	K07462	recJ;single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
BER93_09410	K02836	prfB;peptide chain release factor 2
BER93_09415	K04567	KARS, lysS;lysyl-tRNA synthetase, class II [EC:6.1.1.6]
BER93_09420	K13815	rpfG;two-component system, response regulator RpfG
BER93_09430	K10715	rpfC;two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
BER93_09435	K01715	crt;enoyl-CoA hydratase [EC:4.2.1.17]
BER93_09440	K01897	ACSL, fadD;long-chain acyl-CoA synthetase [EC:6.2.1.3]
BER93_09450	K01681	ACO, acnA;aconitate hydratase [EC:4.2.1.3]
BER93_09465	K01682	acnB;aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
BER93_09470	K09023	rutD;aminoacrylate hydrolase [EC:3.5.1.-]
BER93_09475	K21023	mucR;diguanylate cyclase [EC:2.7.7.65]
BER93_09480	K03412	cheB;two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
BER93_09485	K03411	cheD;chemotaxis protein CheD [EC:3.5.1.44]
BER93_09490	K00575	cheR;chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
BER93_09500	K03408	cheW;purine-binding chemotaxis protein CheW
BER93_09510	K05874	tsr;methyl-accepting chemotaxis protein I, serine sensor receptor
BER93_09520	K05874	tsr;methyl-accepting chemotaxis protein I, serine sensor receptor
BER93_09525	K05874	tsr;methyl-accepting chemotaxis protein I, serine sensor receptor
BER93_09535	K05874	tsr;methyl-accepting chemotaxis protein I, serine sensor receptor
BER93_09560	K03407	cheA;two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
BER93_09565	K03413	cheY;two-component system, chemotaxis family, chemotaxis protein CheY
BER93_09575	K03408	cheW;purine-binding chemotaxis protein CheW
BER93_09580	K03496	parA, soj;chromosome partitioning protein
BER93_09585	K02557	motB;chemotaxis protein MotB
BER93_09590	K02556	motA;chemotaxis protein MotA
BER93_09705	K07400	nfuA;Fe/S biogenesis protein NfuA
BER93_09710	K01724	PCBD, phhB;4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
BER93_09720	K07483	K07483;transposase
BER93_09725	K07497	K07497;putative transposase
BER93_09750	K06179	rluC;23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
BER93_09755	K08300	rne;ribonuclease E [EC:3.1.26.12]
BER93_09760	K07689	uvrY, gacA, varA;two-component system, NarL family, invasion response regulator UvrY
BER93_09765	K07146	K07146;UPF0176 protein
BER93_09775	K01802	E5.2.1.8;peptidylprolyl isomerase [EC:5.2.1.8]
BER93_09785	K22926	tviB, vipA;UDP-N-acetylglucosamine 6-dehydrogenase [EC:1.1.1.136]
BER93_09795	K07481	K07481;transposase, IS5 family
BER93_09805	K07483	K07483;transposase
BER93_09810	K07497	K07497;putative transposase
BER93_09815	K07497	K07497;putative transposase
BER93_09845	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_09855	K11907	vasG, clpV;type VI secretion system protein VasG
BER93_09910	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_09935	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_09975	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_09980	K07483	K07483;transposase
BER93_10030	K07481	K07481;transposase, IS5 family
BER93_10040	K02302	cysG;uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
BER93_10050	K03752	mobA;molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
BER93_10055	K03750	moeA;molybdopterin molybdotransferase [EC:2.10.1.1]
BER93_10075	K21029	moeB;molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
BER93_10080	K03750	moeA;molybdopterin molybdotransferase [EC:2.10.1.1]
BER93_10085	K03977	engA, der;GTPase
BER93_10090	K17713	bamB;outer membrane protein assembly factor BamB
BER93_10110	K06941	rlmN;23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
BER93_10115	K00940	ndk, NME;nucleoside-diphosphate kinase [EC:2.7.4.6]
BER93_10125	K07516	fadN;3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
BER93_10130	K00632	fadA, fadI;acetyl-CoA acyltransferase [EC:2.3.1.16]
BER93_10145	K07478	ycaJ;putative ATPase
BER93_10150	K03634	lolA;outer membrane lipoprotein carrier protein
BER93_10160	K03466	ftsK, spoIIIE;DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
BER93_10165	K00384	trxB, TRR;thioredoxin reductase (NADPH) [EC:1.8.1.9]
BER93_10175	K00684	aat;leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
BER93_10180	K02518	infA;translation initiation factor IF-1
BER93_10185	K03694	clpA;ATP-dependent Clp protease ATP-binding subunit ClpA
BER93_10190	K06891	clpS;ATP-dependent Clp protease adaptor protein ClpS
BER93_10195	K12152	nudJ;phosphatase NudJ [EC:3.6.1.-]
BER93_10200	K00566	mnmA, trmU;tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
BER93_10205	K07153	hflD;high frequency lysogenization protein
BER93_10240	K13533	kinE;two-component system, sporulation sensor kinase E [EC:2.7.13.3]
BER93_10260	K03415	cheV;two-component system, chemotaxis family, chemotaxis protein CheV
BER93_10270	K02388	flgC;flagellar basal-body rod protein FlgC
BER93_10275	K02389	flgD;flagellar basal-body rod modification protein FlgD
BER93_10280	K02390	flgE;flagellar hook protein FlgE
BER93_10285	K02391	flgF;flagellar basal-body rod protein FlgF
BER93_10290	K02392	flgG;flagellar basal-body rod protein FlgG
BER93_10295	K02393	flgH;flagellar L-ring protein precursor FlgH
BER93_10300	K02394	flgI;flagellar P-ring protein precursor FlgI
BER93_10305	K02395	flgJ;flagellar protein FlgJ
BER93_10315	K02397	flgL;flagellar hook-associated protein 3 FlgL
BER93_10325	K02407	fliD;flagellar hook-associated protein 2
BER93_10330	K02422	fliS;flagellar protein FliS
BER93_10345	K02479	K02479;two-component system, NarL family, response regulator
BER93_10350	K03092	rpoN;RNA polymerase sigma-54 factor
BER93_10355	K03412	cheB;two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
BER93_10360	K07712	glnG, ntrC;two-component system, NtrC family, nitrogen regulation response regulator GlnG
BER93_10380	K02408	fliE;flagellar hook-basal body complex protein FliE
BER93_10385	K02409	fliF;flagellar M-ring protein FliF
BER93_10390	K02410	fliG;flagellar motor switch protein FliG
BER93_10400	K02412	fliI;flagellum-specific ATP synthase [EC:7.4.2.8]
BER93_10420	K02416	fliM;flagellar motor switch protein FliM
BER93_10425	K02417	fliNY, fliN;flagellar motor switch protein FliN/FliY
BER93_10430	K02418	fliOZ, fliO;flagellar protein FliO/FliZ
BER93_10435	K02419	fliP;flagellar biosynthetic protein FliP
BER93_10440	K02420	fliQ;flagellar biosynthetic protein FliQ
BER93_10445	K02421	fliR;flagellar biosynthetic protein FliR
BER93_10465	K02401	flhB;flagellar biosynthetic protein FlhB
BER93_10480	K04562	flhG, fleN;flagellar biosynthesis protein FlhG
BER93_10485	K02405	fliA;RNA polymerase sigma factor for flagellar operon FliA
BER93_10490	K03413	cheY;two-component system, chemotaxis family, chemotaxis protein CheY
BER93_10495	K03414	cheZ;chemotaxis protein CheZ
BER93_10500	K03407	cheA;two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
BER93_10580	K07497	K07497;putative transposase
BER93_10625	K00872	thrB1;homoserine kinase [EC:2.7.1.39]
BER93_10640	K07497	K07497;putative transposase
BER93_10650	K07481	K07481;transposase, IS5 family
BER93_10685	K07497	K07497;putative transposase
BER93_10690	K07483	K07483;transposase
BER93_10695	K20548	ahgd;3,6-anhydro-alpha-L-galactose dehydrogenase [EC:1.2.1.92]
BER93_10710	K00254	DHODH, pyrD;dihydroorotate dehydrogenase [EC:1.3.5.2]
BER93_10715	K00075	murB;UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
BER93_10730	K03526	gcpE, ispG;(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
BER93_10770	K07481	K07481;transposase, IS5 family
BER93_10840	K01810	GPI, pgi;glucose-6-phosphate isomerase [EC:5.3.1.9]
BER93_10845	K01579	panD;aspartate 1-decarboxylase [EC:4.1.1.11]
BER93_10850	K01918	panC;pantoate--beta-alanine ligase [EC:6.3.2.1]
BER93_10855	K00606	panB;3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
BER93_10860	K00950	folK;2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
BER93_10865	K00970	pcnB;poly(A) polymerase [EC:2.7.7.19]
BER93_10875	K09007	folE2;GTP cyclohydrolase IB [EC:3.5.4.16]
BER93_10880	K08139	HXT;MFS transporter, SP family, sugar:H+ symporter
BER93_10885	K01805	xylA;xylose isomerase [EC:5.3.1.5]
BER93_10890	K00854	xylB, XYLB;xylulokinase [EC:2.7.1.17]
BER93_10950	K01631	dgoA;2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
BER93_10955	K01684	dgoD;galactonate dehydratase [EC:4.2.1.6]
BER93_10965	K00883	dgoK;2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
BER93_10970	K05524	fdxA;ferredoxin
BER93_10980	K01714	dapA;4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
BER93_10995	K03564	BCP, PRXQ, DOT5;peroxiredoxin Q/BCP [EC:1.11.1.15]
BER93_11000	K07175	phoH2;PhoH-like ATPase
BER93_11010	K14153	thiDE;hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
BER93_11030	K06911	K06911;uncharacterized protein
BER93_11050	K03563	csrA;carbon storage regulator
BER93_11055	K01872	AARS, alaS;alanyl-tRNA synthetase [EC:6.1.1.7]
BER93_11060	K03565	recX;regulatory protein
BER93_11065	K03553	recA;recombination protein RecA
BER93_11070	K01356	lexA;repressor LexA [EC:3.4.21.88]
BER93_11075	K03688	ubiB, aarF;ubiquinone biosynthesis protein
BER93_11125	K07497	K07497;putative transposase
BER93_11130	K07497	K07497;putative transposase
BER93_11175	K15721	fyuA;pesticin/yersiniabactin receptor
BER93_11180	K03743	pncC;nicotinamide-nucleotide amidase [EC:3.5.1.42]
BER93_11190	K03665	hflX;GTPase
BER93_11195	K03666	hfq;host factor-I protein
BER93_11200	K00791	miaA, TRIT1;tRNA dimethylallyltransferase [EC:2.5.1.75]
BER93_11205	K00796	folP;dihydropteroate synthase [EC:2.5.1.15]
BER93_11210	K03798	ftsH, hflB;cell division protease FtsH [EC:3.4.24.-]
BER93_11215	K02427	rlmE, rrmJ, ftsJ;23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
BER93_11220	K07574	yhbY;RNA-binding protein
BER93_11245	K07497	K07497;putative transposase
BER93_11330	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_11335	K13444	SUMF1, FGE;formylglycine-generating enzyme [EC:1.8.3.7]
BER93_11345	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_11445	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_11460	K07481	K07481;transposase, IS5 family
BER93_11500	K00995	pgsA, PGS1;CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
BER93_11505	K03703	uvrC;excinuclease ABC subunit C
BER93_11520	K00979	kdsB;3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
BER93_11525	K00912	lpxK;tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
BER93_11530	K11085	msbA;ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
BER93_11535	K03559	exbD;biopolymer transport protein ExbD
BER93_11555	K09810	lolD;lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
BER93_11560	K09808	lolC_E;lipoprotein-releasing system permease protein
BER93_11570	K09159	cptB;antitoxin CptB
BER93_11575	K00240	sdhB, frdB;succinate dehydrogenase / fumarate reductase, iron-sulfur subunit [EC:1.3.5.1 1.3.5.4]
BER93_11585	K00239	sdhA, frdA;succinate dehydrogenase / fumarate reductase, flavoprotein subunit [EC:1.3.5.1 1.3.5.4]
BER93_11590	K00242	sdhD, frdD;succinate dehydrogenase / fumarate reductase, membrane anchor subunit
BER93_11600	K06980	ygfZ;tRNA-modifying protein YgfZ
BER93_11605	K05816	ugpC;sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
BER93_11610	K00036	G6PD, zwf;glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
BER93_11615	K00845	glk;glucokinase [EC:2.7.1.2]
BER93_11620	K01057	PGLS, pgl, devB;6-phosphogluconolactonase [EC:3.1.1.31]
BER93_11625	K01690	edd;phosphogluconate dehydratase [EC:4.2.1.12]
BER93_11630	K01625	eda;2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
BER93_11685	K10715	rpfC;two-component system, sensor histidine kinase RpfC [EC:2.7.13.3]
BER93_11690	K06959	tex;protein Tex
BER93_11715	K03821	phbC, phaC;polyhydroxyalkanoate synthase subunit PhaC [EC:2.3.1.-]
BER93_11725	K17103	CHO1, pssA;CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
BER93_11740	K09773	ppsR;[pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
BER93_11745	K01007	pps, ppsA;pyruvate, water dikinase [EC:2.7.9.2]
BER93_11750	K03442	mscS;small conductance mechanosensitive channel
BER93_11755	K13288	orn, REX2, REXO2;oligoribonuclease [EC:3.1.-.-]
BER93_11760	K11991	tadA;tRNA(adenine34) deaminase [EC:3.5.4.33]
BER93_11765	K11924	mntR;DtxR family transcriptional regulator, manganese transport regulator
BER93_11770	K03322	mntH;manganese transport protein
BER93_11820	K07497	K07497;putative transposase
BER93_11840	K07497	K07497;putative transposase
BER93_11845	K07483	K07483;transposase
BER93_11865	K00147	proA;glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
BER93_11870	K00931	proB;glutamate 5-kinase [EC:2.7.2.11]
BER93_11885	K01755	argH, ASL;argininosuccinate lyase [EC:4.3.2.1]
BER93_11890	K00145	argC;N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
BER93_11900	K22478	K22478;bifunctional N-acetylglutamate synthase/kinase [EC:2.3.1.1 2.7.2.8]
BER93_11910	K01940	argG, ASS1;argininosuccinate synthase [EC:6.3.4.5]
BER93_11915	K09065	argF;N-acetylornithine carbamoyltransferase [EC:2.1.3.9]
BER93_11925	K01883	CARS, cysS;cysteinyl-tRNA synthetase [EC:6.1.1.16]
BER93_11930	K02426	sufE;cysteine desulfuration protein SufE
BER93_11940	K06204	dksA;DnaK suppressor protein
BER93_11945	K08998	K08998;uncharacterized protein
BER93_11950	K01465	URA4, pyrC;dihydroorotase [EC:3.5.2.3]
BER93_11960	K07481	K07481;transposase, IS5 family
BER93_11995	K22292	mupP;N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
BER93_12000	K00568	ubiG;2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
BER93_12005	K12960	mtaD;5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
BER93_12015	K02356	efp;elongation factor P
BER93_12020	K19810	epmB;L-lysine 2,3-aminomutase [EC:5.4.3.-]
BER93_12025	K15396	trmJ;tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
BER93_12030	K01092	E3.1.3.25, IMPA, suhB;myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
BER93_12035	K04564	SOD2;superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
BER93_12050	K15738	uup;ABC transport system ATP-binding/permease protein
BER93_12055	K05591	dbpA;ATP-independent RNA helicase DbpA [EC:3.6.4.13]
BER93_12060	K00759	APRT, apt;adenine phosphoribosyltransferase [EC:2.4.2.7]
BER93_12075	K01800	maiA, GSTZ1;maleylacetoacetate isomerase [EC:5.2.1.2]
BER93_12080	K03704	cspA;cold shock protein
BER93_12105	K03799	htpX;heat shock protein HtpX [EC:3.4.24.-]
BER93_12110	K01894	gluQ;glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
BER93_12115	K00023	phbB;acetoacetyl-CoA reductase [EC:1.1.1.36]
BER93_12135	K03572	mutL;DNA mismatch repair protein MutL
BER93_12140	K01448	amiABC;N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
BER93_12150	K17758	nnr;ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
BER93_12150	K17759	AIBP, nnrE;NAD(P)H-hydrate epimerase [EC:5.1.99.6]
BER93_12155	K18979	queG;epoxyqueuosine reductase [EC:1.17.99.6]
BER93_12160	K03601	xseA;exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
BER93_12180	K09125	K09125;uncharacterized protein
BER93_12200	K00547	mmuM, BHMT2;homocysteine S-methyltransferase [EC:2.1.1.10]
BER93_12205	K16235	mmuP;S-methylmethionine transporter
BER93_12215	K01874	MARS, metG;methionyl-tRNA synthetase [EC:6.1.1.10]
BER93_12225	K03616	rnfB;Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.2.1.2]
BER93_12240	K03088	rpoE;RNA polymerase sigma-70 factor, ECF subfamily
BER93_12265	K00574	cfa;cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
BER93_12280	K00574	cfa;cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
BER93_12295	K14205	mprF, fmtC;phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
BER93_12330	K19577	ydhP;MFS transporter, DHA1 family, inner membrane transport protein
BER93_12335	K10680	nemA;N-ethylmaleimide reductase [EC:1.-.-.-]
BER93_12340	K06193	phnA;protein PhnA
BER93_12360	K03569	mreB;rod shape-determining protein MreB and related proteins
BER93_12375	K04760	greB;transcription elongation factor GreB
BER93_12390	K14441	rimO;ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
BER93_12415	K01494	dcd;dCTP deaminase [EC:3.5.4.13]
BER93_12435	K07386	pepO;putative endopeptidase [EC:3.4.24.-]
BER93_12460	K00285	dadA;D-amino-acid dehydrogenase [EC:1.4.5.1]
BER93_12465	K07148	K07148;uncharacterized protein
BER93_12470	K03775	slyD;FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
BER93_12475	K19303	mepH;murein DD-endopeptidase [EC:3.4.-.-]
BER93_12480	K19303	mepH;murein DD-endopeptidase [EC:3.4.-.-]
BER93_12490	K07483	K07483;transposase
BER93_12495	K07497	K07497;putative transposase
BER93_12505	K07481	K07481;transposase, IS5 family
BER93_12535	K01875	SARS, serS;seryl-tRNA synthetase [EC:6.1.1.11]
BER93_12540	K03832	tonB;periplasmic protein TonB
BER93_12550	K00800	aroA;3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
BER93_12560	K00831	serC, PSAT1;phosphoserine aminotransferase [EC:2.6.1.52]
BER93_12565	K07147	msrP;methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
BER93_12570	K02529	lacI, galR;LacI family transcriptional regulator
BER93_12575	K11183	PTS-HPR.FRUB, fruB, fpr;phosphocarrier protein FPr
BER93_12575	K02768	PTS-Fru-EIIA, fruB;PTS system, fructose-specific IIA component [EC:2.7.1.202]
BER93_12575	K08483	PTS-EI.PTSI, ptsI;phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]
BER93_12580	K00882	fruK;1-phosphofructokinase [EC:2.7.1.56]
BER93_12585	K02769	PTS-Fru-EIIB, fruA;PTS system, fructose-specific IIB component [EC:2.7.1.202]
BER93_12585	K02770	PTS-Fru-EIIC, fruA;PTS system, fructose-specific IIC component
BER93_12595	K03074	secF;preprotein translocase subunit SecF
BER93_12605	K03210	yajC;preprotein translocase subunit YajC
BER93_12610	K00773	tgt, QTRT1;queuine tRNA-ribosyltransferase [EC:2.4.2.29]
BER93_12615	K07568	queA;S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
BER93_12625	K01845	hemL;glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
BER93_12640	K00761	upp, UPRT;uracil phosphoribosyltransferase [EC:2.4.2.9]
BER93_12675	K00954	E2.7.7.3A, coaD, kdtB;pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
BER93_12680	K08316	rsmD;16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
BER93_12685	K04079	HSP90A, htpG;molecular chaperone HtpG
BER93_12710	K07481	K07481;transposase, IS5 family
BER93_12725	K11102	gltP, gltT;proton glutamate symport protein
BER93_12730	K01077	E3.1.3.1, phoA, phoB;alkaline phosphatase [EC:3.1.3.1]
BER93_12735	K04075	tilS, mesJ;tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
BER93_12740	K03602	xseB;exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
BER93_12745	K00795	ispA;farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
BER93_12760	K03592	pmbA;PmbA protein
BER93_12765	K09889	yjgA;ribosome-associated protein
BER93_12770	K03568	tldD;TldD protein
BER93_12785	K08301	rng, cafA;ribonuclease G [EC:3.1.26.-]
BER93_12790	K06287	maf;septum formation protein
BER93_12795	K09807	K09807;uncharacterized protein
BER93_12800	K00783	rlmH;23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
BER93_12805	K07497	K07497;putative transposase
BER93_12825	K09710	ybeB;ribosome-associated protein
BER93_12830	K00969	nadD;nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
BER93_12845	K01869	LARS, leuS;leucyl-tRNA synthetase [EC:6.1.1.4]
BER93_12855	K05838	ybbN;putative thioredoxin
BER93_12935	K03229	yscU, sctU, hrcU, ssaU;type III secretion protein U
BER93_12960	K02420	fliQ;flagellar biosynthetic protein FliQ
BER93_12990	K19551	pelC;pectate lyase C [EC:4.2.2.2 4.2.2.10]
BER93_13015	K09779	K09779;uncharacterized protein
BER93_13050	K18893	vcaM;ATP-binding cassette, subfamily B, multidrug efflux pump
BER93_13085	K06182	rluF;23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
BER93_13100	K05592	deaD, cshA;ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
BER93_13160	K02014	TC.FEV.OM;iron complex outermembrane recepter protein
BER93_13170	K00123	fdoG, fdhF, fdwA;formate dehydrogenase major subunit [EC:1.17.1.9]
BER93_13180	K14647	vpr;minor extracellular serine protease Vpr [EC:3.4.21.-]
BER93_13205	K01179	E3.2.1.4;endoglucanase [EC:3.2.1.4]
BER93_13215	K09823	zur;Fur family transcriptional regulator, zinc uptake regulator
BER93_13220	K01885	EARS, gltX;glutamyl-tRNA synthetase [EC:6.1.1.17]
BER93_13250	K07115	rlmJ;23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
BER93_13260	K03723	mfd;transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
BER93_13265	K03555	mutS;DNA mismatch repair protein MutS
BER93_13270	K03782	katG;catalase-peroxidase [EC:1.11.1.21]
BER93_13285	K07497	K07497;putative transposase
BER93_13305	K01834	PGAM, gpmA;2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
BER93_13365	K19190	nboR;nicotine blue oxidoreductase [EC:1.1.1.328]
BER93_13375	K11177	yagR;xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
BER93_13375	K11177	yagR;xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
BER93_13385	K03111	ssb;single-strand DNA-binding protein
BER93_13395	K02523	ispB;octaprenyl-diphosphate synthase [EC:2.5.1.90]
BER93_13405	K23169	murD2;UDP-N-acetylmuramoyl-L-alanine---L-glutamate ligase [EC:6.3.2.53]
BER93_13420	K00928	lysC;aspartate kinase [EC:2.7.2.4]
BER93_13430	K06998	phzF;trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
BER93_13440	K04063	osmC, ohr;lipoyl-dependent peroxidase
BER93_13445	K00609	pyrB, PYR2;aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
BER93_13450	K07447	ruvX;putative holliday junction resolvase [EC:3.1.-.-]
BER93_13455	K07735	algH;putative transcriptional regulator
BER93_13480	K02669	pilT;twitching motility protein PilT
BER93_13485	K02669	pilT;twitching motility protein PilT
BER93_13490	K06997	yggS, PROSC;PLP dependent protein
BER93_13495	K00286	proC;pyrroline-5-carboxylate reductase [EC:1.5.1.2]
BER93_13530	K09014	sufB;Fe-S cluster assembly protein SufB
BER93_13535	K09013	sufC;Fe-S cluster assembly ATP-binding protein
BER93_13540	K09015	sufD;Fe-S cluster assembly protein SufD
BER93_13545	K11717	sufS;cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
BER93_13560	K16090	fiu;catecholate siderophore receptor
BER93_13565	K07336	K07336;PKHD-type hydroxylase [EC:1.14.11.-]
BER93_13575	K07497	K07497;putative transposase
BER93_13595	K02237	comEA;competence protein ComEA
BER93_13600	K01439	dapE;succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
BER93_13610	K07102	amgK;N-acetylmuramate 1-kinase [EC:2.7.1.221]
BER93_13615	K00992	murU;N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
BER93_13625	K10763	hda;DnaA-homolog protein
BER93_13630	K03548	perM;putative permease
BER93_13640	K01933	purM;phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
BER93_13645	K11175	purN;phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
BER93_13670	K00790	murA;UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
BER93_13680	K06041	kdsD, kpsF;arabinose-5-phosphate isomerase [EC:5.3.1.13]
BER93_13685	K03270	kdsC;3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
BER93_13695	K09774	lptA;lipopolysaccharide export system protein LptA
BER93_13700	K06861	lptB;lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
BER93_13715	K02806	PTS-Ntr-EIIA, ptsN;PTS system, nitrogen regulatory IIA component [EC:2.7.1.-]
BER93_13720	K06023	hprK, ptsK;HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
BER93_13725	K06958	rapZ;RNase adapter protein RapZ
BER93_13735	K11189	PTS-HPR;phosphocarrier protein
BER93_13740	K08483	PTS-EI.PTSI, ptsI;phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]
BER93_13745	K06213	mgtE;magnesium transporter
BER93_13750	K07497	K07497;putative transposase
BER93_13780	K00845	glk;glucokinase [EC:2.7.1.2]
BER93_13795	K06306	yaaH;spore germination protein
BER93_13800	K12373	HEXA_B;hexosaminidase [EC:3.2.1.52]
BER93_13810	K05349	bglX;beta-glucosidase [EC:3.2.1.21]
BER93_13820	K07497	K07497;putative transposase
BER93_13840	K07481	K07481;transposase, IS5 family
BER93_13850	K07497	K07497;putative transposase
BER93_13855	K07483	K07483;transposase
BER93_13875	K01939	purA, ADSS;adenylosuccinate synthase [EC:6.3.4.4]
BER93_13885	K04087	hflC;membrane protease subunit HflC [EC:3.4.-.-]
BER93_13890	K04088	hflK;membrane protease subunit HflK [EC:3.4.-.-]
BER93_13895	K02658	pilH;twitching motility two-component system response regulator PilH
BER93_13900	K05516	cbpA;curved DNA-binding protein
BER93_13910	K03386	PRDX2_4, ahpC;peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
BER93_13980	K02688	prpR;transcriptional regulator, propionate catabolism operon regulatory protein
BER93_13995	K07481	K07481;transposase, IS5 family
BER93_14015	K02341	holB;DNA polymerase III subunit delta' [EC:2.7.7.7]
BER93_14020	K07082	K07082;UPF0755 protein
BER93_14025	K01665	pabB;para-aminobenzoate synthetase component I [EC:2.6.1.85]
BER93_14035	K02078	acpP;acyl carrier protein
BER93_14040	K00059	fabG, OAR1;3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
BER93_14045	K00645	fabD, MCAT, MCT1;[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
BER93_14050	K00648	fabH;3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
BER93_14055	K02911	RP-L32, MRPL32, rpmF;large subunit ribosomal protein L32
BER93_14060	K07040	K07040;uncharacterized protein
BER93_14065	K06287	maf;septum formation protein
BER93_14085	K03924	moxR;MoxR-like ATPase [EC:3.6.3.-]
BER93_14095	K22452	tgpA;protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
BER93_14105	K02503	HINT1, hinT, hit;histidine triad (HIT) family protein
BER93_14110	K06187	recR;recombination protein RecR
BER93_14115	K09747	K09747;uncharacterized protein
BER93_14120	K02343	dnaX;DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
BER93_14135	K03635	MOCS2B, moaE;molybdopterin synthase catalytic subunit [EC:2.8.1.12]
BER93_14145	K03637	moaC, CNX3;cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
BER93_14150	K03639	moaA, CNX2;GTP 3',8-cyclase [EC:4.1.99.22]
BER93_14155	K00784	rnz;ribonuclease Z [EC:3.1.26.11]
BER93_14160	K11211	kdkA;3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
BER93_14165	K12982	opsX;heptosyltransferase I [EC:2.4.-.-]
BER93_14180	K20074	prpC, phpP;PPM family protein phosphatase [EC:3.1.3.16]
BER93_14185	K02342	dnaQ;DNA polymerase III subunit epsilon [EC:2.7.7.7]
BER93_14190	K03469	rnhA, RNASEH1;ribonuclease HI [EC:3.1.26.4]
BER93_14200	K01069	gloB, gloC, HAGH;hydroxyacylglutathione hydrolase [EC:3.1.2.6]
BER93_14205	K22409	sle1;N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
BER93_14215	K10563	mutM, fpg;formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
BER93_14255	K14162	dnaE2;error-prone DNA polymerase [EC:2.7.7.7]
BER93_14270	K01356	lexA;repressor LexA [EC:3.4.21.88]
BER93_14305	K13483	yagT;xanthine dehydrogenase YagT iron-sulfur-binding subunit
BER93_14310	K11178	yagS;xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
BER93_14315	K11177	yagR;xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
BER93_14365	K07481	K07481;transposase, IS5 family
BER93_14390	K03545	tig;trigger factor
BER93_14395	K01358	clpP, CLPP;ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
BER93_14400	K03544	clpX, CLPX;ATP-dependent Clp protease ATP-binding subunit ClpX
BER93_14405	K01338	lon;ATP-dependent Lon protease [EC:3.4.21.53]
BER93_14410	K03530	hupB;DNA-binding protein HU-beta
BER93_14455	K10026	queE;7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
BER93_14465	K03640	pal;peptidoglycan-associated lipoprotein
BER93_14470	K03641	tolB;TolB protein
BER93_14480	K03560	tolR;biopolymer transport protein TolR
BER93_14485	K03562	tolQ;biopolymer transport protein TolQ
BER93_14490	K07107	ybgC;acyl-CoA thioester hydrolase [EC:3.1.2.-]
BER93_14495	K03551	ruvB;holliday junction DNA helicase RuvB [EC:3.6.4.12]
BER93_14500	K03549	kup;KUP system potassium uptake protein
BER93_14505	K03550	ruvA;holliday junction DNA helicase RuvA [EC:3.6.4.12]
BER93_14510	K01159	ruvC;crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
BER93_14530	K01876	aspS;aspartyl-tRNA synthetase [EC:6.1.1.12]
BER93_14545	K08305	mltB;membrane-bound lytic murein transglycosylase B [EC:4.2.2.-]
BER93_14550	K06158	ABCF3;ATP-binding cassette, subfamily F, member 3
BER93_14555	K19611	fepA, pfeA, iroN, pirA;ferric enterobactin receptor
BER93_14570	K19611	fepA, pfeA, iroN, pirA;ferric enterobactin receptor
BER93_14575	K16092	btuB;vitamin B12 transporter
BER93_14580	K03455	TC.KEF;monovalent cation:H+ antiporter-2, CPA2 family
BER93_14610	K16237	aroP;aromatic amino acid permease
BER93_14620	K05874	tsr;methyl-accepting chemotaxis protein I, serine sensor receptor
BER93_14630	K18457	laaA;L-proline amide hydrolase [EC:3.5.1.101]
BER93_14640	K14052	puuP;putrescine importer
BER93_14645	K01337	E3.4.21.50;lysyl endopeptidase [EC:3.4.21.50]
BER93_14710	K00275	pdxH, PNPO;pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
BER93_14715	K00891	E2.7.1.71, aroK, aroL;shikimate kinase [EC:2.7.1.71]
BER93_14720	K01735	aroB;3-dehydroquinate synthase [EC:4.2.3.4]
BER93_14730	K01599	hemE, UROD;uroporphyrinogen decarboxylase [EC:4.1.1.37]
BER93_14735	K18326	mdtD;MFS transporter, DHA2 family, multidrug resistance protein
BER93_14740	K07481	K07481;transposase, IS5 family
BER93_14750	K10909	luxQ;two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
BER93_14770	K13589	cpdR;two-component system, cell cycle response regulator CpdR
BER93_14820	K04485	radA, sms;DNA repair protein RadA/Sms
BER93_14830	K02300	cyoD;cytochrome o ubiquinol oxidase subunit IV
BER93_14835	K02299	cyoC;cytochrome o ubiquinol oxidase subunit III
BER93_14840	K02298	cyoB;cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
BER93_14855	K03527	ispH, lytB;4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
BER93_14860	K03101	lspA;signal peptidase II [EC:3.4.23.36]
BER93_14865	K01870	IARS, ileS;isoleucyl-tRNA synthetase [EC:6.1.1.5]
BER93_14870	K11753	ribF;riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
BER93_14875	K03980	murJ, mviN;putative peptidoglycan lipid II flippase
BER93_14880	K02968	RP-S20, rpsT;small subunit ribosomal protein S20
BER93_14885	K03979	obgE, cgtA, MTG2;GTPase [EC:3.6.5.-]
BER93_14890	K02899	RP-L27, MRPL27, rpmA;large subunit ribosomal protein L27
BER93_14895	K02888	RP-L21, MRPL21, rplU;large subunit ribosomal protein L21
BER93_14900	K03701	uvrA;excinuclease ABC subunit A
BER93_14905	K12500	tesC;thioesterase III [EC:3.1.2.-]
BER93_14915	K01692	paaF, echA;enoyl-CoA hydratase [EC:4.2.1.17]
BER93_14920	K10805	tesB;acyl-CoA thioesterase II [EC:3.1.2.-]
BER93_14945	K21420	bpt;leucyl-tRNA---protein transferase [EC:2.3.2.29]
BER93_14970	K07497	K07497;putative transposase
BER93_14975	K08289	purT;phosphoribosylglycinamide formyltransferase 2 [EC:2.1.2.2]
BER93_15005	K01247	alkA;DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
BER93_15020	K02479	K02479;two-component system, NarL family, response regulator
BER93_15035	K03610	minC;septum site-determining protein MinC
BER93_15040	K03609	minD;septum site-determining protein MinD
BER93_15045	K03608	minE;cell division topological specificity factor
BER93_15055	K07645	qseC;two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
BER93_15060	K07665	cusR, copR, silR;two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
BER93_15075	K03760	eptA, pmrC;lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
BER93_15095	K00281	GLDC, gcvP;glycine dehydrogenase [EC:1.4.4.2]
BER93_15100	K03781	katE, CAT, catB, srpA;catalase [EC:1.11.1.6]
BER93_15155	K16091	fecA;Fe(3+) dicitrate transport protein
BER93_15170	K08161	mdtG;MFS transporter, DHA1 family, multidrug resistance protein
BER93_15175	K03894	iucA;N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
BER93_15180	K01586	lysA;diaminopimelate decarboxylase [EC:4.1.1.20]
BER93_15185	K16092	btuB;vitamin B12 transporter
BER93_15195	K03695	clpB;ATP-dependent Clp protease ATP-binding subunit ClpB
BER93_15250	K11904	vgrG;type VI secretion system secreted protein VgrG
BER93_15255	K07497	K07497;putative transposase
BER93_15260	K07483	K07483;transposase
BER93_15320	K05824	LYS12;homoisocitrate dehydrogenase [EC:1.1.1.87]
BER93_15330	K03676	grxC, GLRX, GLRX2;glutaredoxin 3
BER93_15340	K01423	bepA;beta-barrel assembly-enhancing protease [EC:3.4.-.-]
BER93_15345	K07657	phoB;two-component system, OmpR family, phosphate regulon response regulator PhoB
BER93_15350	K07636	phoR;two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
BER93_15355	K00937	ppk;polyphosphate kinase [EC:2.7.4.1]
BER93_15360	K01524	ppx-gppA;exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
BER93_15370	K01096	pgpB;phosphatidylglycerophosphatase B [EC:3.1.3.27 3.1.3.81 3.1.3.4 3.6.1.27]
BER93_15375	K03269	lpxH;UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
BER93_15400	K00764	purF, PPAT;amidophosphoribosyltransferase [EC:2.4.2.14]
BER93_15415	K11754	folC;dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
BER93_15500	K14623	dinD;DNA-damage-inducible protein D
BER93_15515	K01153	hsdR;type I restriction enzyme, R subunit [EC:3.1.21.3]
BER93_15535	K07497	K07497;putative transposase
BER93_15555	K17103	CHO1, pssA;CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
BER93_15565	K01881	PARS, proS;prolyl-tRNA synthetase [EC:6.1.1.15]
BER93_15580	K02066	mlaE, linK;phospholipid/cholesterol/gamma-HCH transport system permease protein
BER93_15590	K02067	mlaD, linM;phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
BER93_15605	K00311	ETFDH;electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
BER93_15615	K01029	E2.8.3.5B, scoB;3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
BER93_15620	K01028	E2.8.3.5A, scoA;3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
BER93_15625	K15778	pmm-pgm;phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
BER93_15630	K16011	algA, xanB, rfbA, wbpW, pslB;mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
BER93_15635	K00067	rfbD, rmlD;dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
BER93_15640	K01790	rfbC, rmlC;dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
BER93_15645	K00973	E2.7.7.24, rfbA, rffH;glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
BER93_15650	K01710	E4.2.1.46, rfbB, rffG;dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
BER93_15655	K03521	fixA, etfB;electron transfer flavoprotein beta subunit
BER93_15660	K03522	fixB, etfA;electron transfer flavoprotein alpha subunit
BER93_15670	K20534	gtrB, csbB;polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
BER93_15735	K01760	metC;cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
BER93_15740	K01697	CBS;cystathionine beta-synthase [EC:4.2.1.22]
BER93_15760	K02669	pilT;twitching motility protein PilT
BER93_15770	K01800	maiA, GSTZ1;maleylacetoacetate isomerase [EC:5.2.1.2]
BER93_15780	K11927	rhlE;ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
BER93_15785	K01737	queD, ptpS, PTS;6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
BER93_15795	K01935	bioD;dethiobiotin synthetase [EC:6.3.3.3]
BER93_15800	K08968	msrC;L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
BER93_15815	K07481	K07481;transposase, IS5 family
BER93_15825	K01091	gph;phosphoglycolate phosphatase [EC:3.1.3.18]
BER93_15830	K02346	dinB;DNA polymerase IV [EC:2.7.7.7]
BER93_15840	K01716	fabA;3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
BER93_15845	K00647	fabB;3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
BER93_15855	K01414	prlC;oligopeptidase A [EC:3.4.24.70]
BER93_15890	K00820	glmS, GFPT;glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
BER93_15905	K07710	atoS;two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
BER93_15915	K04042	glmU;bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
BER93_15925	K04093	pheA1;chorismate mutase [EC:5.4.99.5]
BER93_15930	K02114	ATPF1E, atpC;F-type H+-transporting ATPase subunit epsilon
BER93_15935	K02112	ATPF1B, atpD;F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
BER93_15940	K02115	ATPF1G, atpG;F-type H+-transporting ATPase subunit gamma
BER93_15945	K02111	ATPF1A, atpA;F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
BER93_15950	K02113	ATPF1D, atpH;F-type H+-transporting ATPase subunit delta
BER93_15955	K02109	ATPF0B, atpF;F-type H+-transporting ATPase subunit b
BER93_15960	K02110	ATPF0C, atpE;F-type H+-transporting ATPase subunit c
BER93_15965	K02108	ATPF0A, atpB;F-type H+-transporting ATPase subunit a
BER93_15980	K00382	DLD, lpd, pdhD;dihydrolipoamide dehydrogenase [EC:1.8.1.4]
BER93_16015	K02073	metQ;D-methionine transport system substrate-binding protein
BER93_16020	K02072	metI;D-methionine transport system permease protein
BER93_16025	K02071	metN;D-methionine transport system ATP-binding protein
BER93_16030	K09767	yajQ;cyclic-di-GMP-binding protein
BER93_16075	K06183	rsuA;16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
BER93_16080	K00564	rsmC;16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
BER93_16100	K07716	pleC;two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
BER93_16120	K01775	alr;alanine racemase [EC:5.1.1.1]
BER93_16125	K00285	dadA;D-amino-acid dehydrogenase [EC:1.4.5.1]
BER93_16140	K07305	msrB;peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
BER93_16145	K02556	motA;chemotaxis protein MotA
BER93_16150	K02557	motB;chemotaxis protein MotB
BER93_16220	K00974	cca;tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
BER93_16230	K08306	mltC;membrane-bound lytic murein transglycosylase C [EC:4.2.2.-]
BER93_16250	K07497	K07497;putative transposase
BER93_16305	K03786	aroQ, qutE;3-dehydroquinate dehydratase II [EC:4.2.1.10]
BER93_16310	K02160	accB, bccP;acetyl-CoA carboxylase biotin carboxyl carrier protein
BER93_16320	K01961	accC;acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
BER93_16325	K02687	prmA;ribosomal protein L11 methyltransferase [EC:2.1.1.-]
BER93_16345	K03557	fis;Fis family transcriptional regulator, factor for inversion stimulation protein
BER93_16355	K00602	purH;phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
BER93_16360	K01945	purD;phosphoribosylamine---glycine ligase [EC:6.3.4.13]
BER93_16385	K08227	lplT;MFS transporter, LPLT family, lysophospholipid transporter
BER93_16400	K02227	cbiB, cobD;adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
BER93_16405	K03426	E3.6.1.22, NUDT12, nudC;NAD+ diphosphatase [EC:3.6.1.22]
BER93_16415	K07481	K07481;transposase, IS5 family
BER93_16425	K07483	K07483;transposase
BER93_16430	K07497	K07497;putative transposase
BER93_16460	K00549	metE;5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
BER93_16480	K01687	ilvD;dihydroxy-acid dehydratase [EC:4.2.1.9]
BER93_16500	K07483	K07483;transposase
BER93_16515	K07481	K07481;transposase, IS5 family
BER93_16520	K18138	acrB, mexB, adeJ, smeE, mtrD, cmeB;multidrug efflux pump
BER93_16540	K00354	E1.6.99.1;NADPH2 dehydrogenase [EC:1.6.99.1]
BER93_16560	K03424	tatD;TatD DNase family protein [EC:3.1.21.-]
BER93_16575	K03579	hrpB;ATP-dependent helicase HrpB [EC:3.6.4.13]
BER93_16595	K06181	rluE;23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
BER93_16610	K23256	curA;NADPH-dependent curcumin reductase [EC:1.3.1.-]
BER93_16615	K06222	dkgB;2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
BER93_16625	K04063	osmC, ohr;lipoyl-dependent peroxidase
BER93_16635	K06916	zapE;cell division protein ZapE
BER93_16705	K15342	cas1;CRISP-associated protein Cas1
BER93_16710	K07012	cas3;CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 3.6.4.-]
BER93_16715	K19127	csy1;CRISPR-associated protein Csy1
BER93_16720	K19128	csy2;CRISPR-associated protein Csy2
BER93_16725	K19129	csy3;CRISPR-associated protein Csy3
BER93_16730	K19130	csy4, cas6f;CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
BER93_16735	K07497	K07497;putative transposase
BER93_16740	K07497	K07497;putative transposase
BER93_16745	K07483	K07483;transposase
BER93_16755	K18138	acrB, mexB, adeJ, smeE, mtrD, cmeB;multidrug efflux pump
BER93_16765	K00955	cysNC;bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
BER93_16770	K00957	cysD;sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
BER93_16775	K00380	cysJ;sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
BER93_16780	K00381	cysI;sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
BER93_16785	K00390	cysH;phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
BER93_16795	K16092	btuB;vitamin B12 transporter
BER93_16805	K07647	torS;two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
BER93_16815	K13634	cysB;LysR family transcriptional regulator, cys regulon transcriptional activator
BER93_16820	K02302	cysG;uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
BER93_16825	K19725	dcsD;O-ureido-L-serine/cysteine synthase [EC:2.6.99.3 2.5.1.47]
BER93_16835	K01623	ALDO;fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
BER93_16840	K00873	PK, pyk;pyruvate kinase [EC:2.7.1.40]
BER93_16845	K22292	mupP;N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
BER93_16850	K00927	PGK, pgk;phosphoglycerate kinase [EC:2.7.2.3]
BER93_16875	K07640	cpxA;two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
BER93_16880	K04487	iscS, NFS1;cysteine desulfurase [EC:2.8.1.7]
BER93_16915	K07483	K07483;transposase
BER93_16920	K07497	K07497;putative transposase
BER93_16930	K07481	K07481;transposase, IS5 family
BER93_16945	K00134	GAPDH, gapA;glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
BER93_16965	K02020	modA;molybdate transport system substrate-binding protein
BER93_16970	K02018	modB;molybdate transport system permease protein
BER93_16975	K02017	modC;molybdate transport system ATP-binding protein [EC:7.3.2.5]
BER93_17010	K16088	TC.FEV.OM1, fhuE, fpvA, fptA;outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
BER93_17015	K00615	E2.2.1.1, tktA, tktB;transketolase [EC:2.2.1.1]
BER93_17020	K11102	gltP, gltT;proton glutamate symport protein
BER93_17030	K07114	yfbK;Ca-activated chloride channel homolog
BER93_17050	K03924	moxR;MoxR-like ATPase [EC:3.6.3.-]
BER93_17075	K07481	K07481;transposase, IS5 family
BER93_17090	K03316	TC.CPA1;monovalent cation:H+ antiporter, CPA1 family
BER93_17120	K21929	udg;uracil-DNA glycosylase [EC:3.2.2.27]
BER93_17130	K06607	iolS;myo-inositol catabolism protein IolS [EC:1.1.1.-]
BER93_17175	K07217	K07217;Mn-containing catalase
BER93_17205	K07712	glnG, ntrC;two-component system, NtrC family, nitrogen regulation response regulator GlnG
BER93_17235	K01784	galE, GALE;UDP-glucose 4-epimerase [EC:5.1.3.2]
BER93_17255	K18893	vcaM;ATP-binding cassette, subfamily B, multidrug efflux pump
BER93_17310	K02014	TC.FEV.OM;iron complex outermembrane recepter protein
BER93_17325	K20490	nisF, spaF, cprA, epiF;lantibiotic transport system ATP-binding protein
BER93_17355	K03321	TC.SULP;sulfate permease, SulP family
BER93_17380	K07497	K07497;putative transposase
BER93_17400	K00163	aceE;pyruvate dehydrogenase E1 component [EC:1.2.4.1]
BER93_17450	K05966	citG;triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
BER93_17455	K13934	mdcG;phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66]
BER93_17465	K20510	madC;malonyl-S-ACP:biotin-protein carboxyltransferase subunit MadC [EC:2.1.3.10]
BER93_17470	K13931	mdcC;malonate decarboxylase delta subunit
BER93_17485	K07495	K07495;putative transposase
BER93_17495	K09019	rutE;3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
BER93_17505	K09125	K09125;uncharacterized protein
BER93_17510	K00982	glnE;[glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
BER93_17520	K01053	E3.1.1.17, gnl, RGN;gluconolactonase [EC:3.1.1.17]
BER93_17530	K18118	aarC, cat1;succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
BER93_17540	K01626	E2.5.1.54, aroF, aroG, aroH;3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
BER93_17555	K07495	K07495;putative transposase
BER93_17560	K04077	groEL, HSPD1;chaperonin GroEL
BER93_17565	K04078	groES, HSPE1;chaperonin GroES
BER93_17580	K03926	cutA;periplasmic divalent cation tolerance protein
BER93_17585	K04084	dsbD;thiol:disulfide interchange protein DsbD [EC:1.8.1.8]
BER93_17615	K07497	K07497;putative transposase
BER93_17620	K07483	K07483;transposase
BER93_17640	K06044	treY, glgY;(1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
BER93_17650	K01236	treZ, glgZ;maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
BER93_17655	K00700	GBE1, glgB;1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
BER93_17660	K00703	glgA;starch synthase [EC:2.4.1.21]
BER93_17675	K09781	K09781;uncharacterized protein
BER93_17685	K22051	mscM, bspA;miniconductance mechanosensitive channel
BER93_17700	K03179	ubiA;4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
BER93_17705	K02242	comFC;competence protein ComFC
BER93_17710	K01012	bioB;biotin synthase [EC:2.8.1.6]
BER93_17715	K00652	bioF;8-amino-7-oxononanoate synthase [EC:2.3.1.47]
BER93_17725	K02170	bioH;pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
BER93_17740	K02169	bioC;malonyl-CoA O-methyltransferase [EC:2.1.1.197]
BER93_17760	K22589	thadh;threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
BER93_17770	K03495	gidA, mnmG, MTO1;tRNA uridine 5-carboxymethylaminomethyl modification enzyme
BER93_17795	K02444	glpR;DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
BER93_17800	K00111	glpA, glpD;glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
BER93_17805	K02440	GLPF;glycerol uptake facilitator protein
BER93_17810	K00864	glpK, GK;glycerol kinase [EC:2.7.1.30]
BER93_17820	K07483	K07483;transposase
BER93_17835	K01284	dcp;peptidyl-dipeptidase Dcp [EC:3.4.15.5]
BER93_17880	K03688	ubiB, aarF;ubiquinone biosynthesis protein
BER93_17900	K22320	oleD;2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
BER93_17905	K22319	oleC;olefin beta-lactone synthetase [EC:6.1.3.1]
BER93_17910	K06940	K06940;uncharacterized protein
BER93_17915	K22318	oleB;cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
BER93_17935	K15724	erpA;iron-sulfur cluster insertion protein
BER93_17975	K08311	nudH;putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
BER93_17990	K02996	RP-S9, MRPS9, rpsI;small subunit ribosomal protein S9
BER93_17995	K02871	RP-L13, MRPL13, rplM;large subunit ribosomal protein L13
BER93_18000	K06134	COQ7;3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
BER93_18010	K01611	speD, AMD1;S-adenosylmethionine decarboxylase [EC:4.1.1.50]
BER93_18015	K10914	crp;CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
BER93_18025	K01609	trpC;indole-3-glycerol phosphate synthase [EC:4.1.1.48]
BER93_18030	K00766	trpD;anthranilate phosphoribosyltransferase [EC:2.4.2.18]
BER93_18040	K01658	trpG;anthranilate synthase component II [EC:4.1.3.27]
BER93_18060	K03430	phnW;2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
BER93_18085	K00651	metA;homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
BER93_18120	K05801	djlA;DnaJ like chaperone protein
BER93_18125	K01923	purC;phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
BER93_18160	K05559	phaA;multicomponent K+:H+ antiporter subunit A
BER93_18165	K05560	phaC;multicomponent K+:H+ antiporter subunit C
BER93_18170	K05561	phaD;multicomponent K+:H+ antiporter subunit D
BER93_18180	K05563	phaF;multicomponent K+:H+ antiporter subunit F
BER93_18185	K05571	mnhG, mrpG;multicomponent Na+:H+ antiporter subunit G
BER93_18190	K07481	K07481;transposase, IS5 family
BER93_18220	K08641	vanX;zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
BER93_18225	K11066	E3.5.1.28D, amiD;N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
BER93_18235	K19802	ycjG, ykfB;L-Ala-D/L-Glu epimerase [EC:5.1.1.20]
BER93_18245	K03758	arcD, lysl, lysP;arginine:ornithine antiporter / lysine permease
BER93_18270	K05349	bglX;beta-glucosidase [EC:3.2.1.21]
BER93_18275	K01633	folB;7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
BER93_18280	K01409	KAE1, tsaD, QRI7;N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
BER93_18285	K02970	RP-S21, MRPS21, rpsU;small subunit ribosomal protein S21
BER93_18295	K07058	K07058;membrane protein
BER93_18300	K02316	dnaG;DNA primase [EC:2.7.7.101]
BER93_18305	K14347	SLC10A7, P7;solute carrier family 10 (sodium/bile acid cotransporter), member 7
BER93_18315	K02257	COX10, ctaB, cyoE;heme o synthase [EC:2.5.1.141]
BER93_18345	K02258	COX11, ctaG;cytochrome c oxidase assembly protein subunit 11
BER93_18355	K02275	coxB, ctaC;cytochrome c oxidase subunit II [EC:1.9.3.1]
BER93_18370	K01866	YARS, tyrS;tyrosyl-tRNA synthetase [EC:6.1.1.1]
BER93_18380	K09001	anmK;anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
BER93_18390	K08218	ampG;MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
BER93_18400	K01142	E3.1.11.2, xthA;exodeoxyribonuclease III [EC:3.1.11.2]
BER93_18405	K00762	pyrE;orotate phosphoribosyltransferase [EC:2.4.2.10]
BER93_18415	K03496	parA, soj;chromosome partitioning protein
BER93_18420	K03497	parB, spo0J;ParB family transcriptional regulator, chromosome partitioning protein
BER93_18455	K15778	pmm-pgm;phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
BER93_18460	K01520	dut, DUT;dUTP pyrophosphatase [EC:3.6.1.23]
BER93_18465	K13038	coaBC, dfp;phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
BER93_18470	K03630	radC;DNA repair protein RadC
BER93_18475	K01887	RARS, argS;arginyl-tRNA synthetase [EC:6.1.1.19]
BER93_18485	K05886	sdh;serine 3-dehydrogenase (NADP+) [EC:1.1.1.276]
BER93_18520	K04780	dhbF;nonribosomal peptide synthetase DhbF
BER93_18530	K07642	baeS, smeS;two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
BER93_18535	K07660	phoP;two-component system, OmpR family, response regulator PhoP
BER93_18545	K05539	dusA;tRNA-dihydrouridine synthase A [EC:1.-.-.-]
BER93_18570	K03722	dinG;ATP-dependent DNA helicase DinG [EC:3.6.4.12]
BER93_18580	K00014	aroE;shikimate dehydrogenase [EC:1.1.1.25]
BER93_18590	K00380	cysJ;sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
BER93_18595	K01698	hemB, ALAD;porphobilinogen synthase [EC:4.2.1.24]
BER93_18635	K06153	bacA;undecaprenyl-diphosphatase [EC:3.6.1.27]
BER93_18640	K01915	glnA, GLUL;glutamine synthetase [EC:6.3.1.2]
BER93_18645	K04751	glnB;nitrogen regulatory protein P-II 1
BER93_18650	K03320	amt, AMT, MEP;ammonium transporter, Amt family
BER93_18660	K07712	glnG, ntrC;two-component system, NtrC family, nitrogen regulation response regulator GlnG
BER93_18665	K04565	SOD1;superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
BER93_18670	K04565	SOD1;superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
BER93_18705	K19222	menI, DHNAT;1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
BER93_18725	K03593	mrp, NUBPL;ATP-binding protein involved in chromosome partitioning
BER93_18770	K05846	opuBD;osmoprotectant transport system permease protein
BER93_18775	K05847	opuA;osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
BER93_18785	K02013	ABC.FEV.A;iron complex transport system ATP-binding protein [EC:7.2.2.-]
BER93_18795	K00500	phhA, PAH;phenylalanine-4-hydroxylase [EC:1.14.16.1]
BER93_18800	K00065	kduD;2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
BER93_18805	K01815	kduI;4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
BER93_18815	K03604	purR;LacI family transcriptional regulator, purine nucleotide synthesis repressor
BER93_18855	K00700	GBE1, glgB;1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
BER93_18860	K05343	treS;maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
BER93_18865	K16147	glgE;starch synthase (maltosyl-transferring) [EC:2.4.99.16]
BER93_18935	K01179	E3.2.1.4;endoglucanase [EC:3.2.1.4]
BER93_18945	K01179	E3.2.1.4;endoglucanase [EC:3.2.1.4]
BER93_18950	K13979	yahK;uncharacterized zinc-type alcohol dehydrogenase-like protein [EC:1.-.-.-]
BER93_18955	K00266	gltD;glutamate synthase (NADPH) small chain [EC:1.4.1.13]
BER93_18960	K00265	gltB;glutamate synthase (NADPH) large chain [EC:1.4.1.13]
BER93_18975	K01879	glyS;glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
BER93_18980	K01878	glyQ;glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
BER93_18990	K01951	guaA, GMPS;GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
BER93_19000	K03118	tatC;sec-independent protein translocase protein TatC
BER93_19005	K03117	tatB;sec-independent protein translocase protein TatB
BER93_19010	K03116	tatA;sec-independent protein translocase protein TatA
BER93_19020	K01772	hemH, FECH;protoporphyrin/coproporphyrin ferrochelatase [EC:4.99.1.1 4.99.1.9]
BER93_19035	K03554	rdgC;recombination associated protein RdgC
BER93_19040	K14058	ttcA;tRNA 2-thiocytidine biosynthesis protein TtcA
BER93_19045	K01805	xylA;xylose isomerase [EC:5.3.1.5]
BER93_19055	K01235	aguA;alpha-glucuronidase [EC:3.2.1.139]
BER93_19080	K07497	K07497;putative transposase
BER93_19085	K07483	K07483;transposase
BER93_19125	K01792	E5.1.3.15;glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
BER93_19135	K09858	K09858;SEC-C motif domain protein
BER93_19140	K07090	K07090;uncharacterized protein
BER93_19180	K01495	GCH1, folE;GTP cyclohydrolase IA [EC:3.5.4.16]
BER93_19185	K03761	kgtP;MFS transporter, MHS family, alpha-ketoglutarate permease
BER93_19215	K07481	K07481;transposase, IS5 family
BER93_19235	K07334	higB-1;toxin HigB-1
BER93_19240	K03581	recD;exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
BER93_19245	K03582	recB;exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
BER93_19250	K03583	recC;exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
BER93_19255	K02065	mlaF, linL, mkl;phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
BER93_19260	K02066	mlaE, linK;phospholipid/cholesterol/gamma-HCH transport system permease protein
BER93_19265	K02067	mlaD, linM;phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
BER93_19280	K04754	mlaA, vacJ;phospholipid-binding lipoprotein MlaA
BER93_19290	K00432	gpx;glutathione peroxidase [EC:1.11.1.9]
BER93_19300	K09760	rmuC;DNA recombination protein RmuC
BER93_19325	K00865	glxK, garK;glycerate 2-kinase [EC:2.7.1.165]
BER93_19340	K06969	rlmI;23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
BER93_19355	K07497	K07497;putative transposase
BER93_19365	K03650	mnmE, trmE, MSS1;tRNA modification GTPase [EC:3.6.-.-]
BER93_19370	K03217	yidC, spoIIIJ, OXA1, ccfA;YidC/Oxa1 family membrane protein insertase
BER93_19375	K03536	rnpA;ribonuclease P protein component [EC:3.1.26.5]
BER93_19380	K02914	RP-L34, MRPL34, rpmH;large subunit ribosomal protein L34
BER93_19405	K03496	parA, soj;chromosome partitioning protein
BER93_19450	K03199	virB4, lvhB4;type IV secretion system protein VirB4 [EC:7.4.2.8]
BER93_19455	K03200	virB5, lvhB5;type IV secretion system protein VirB5
BER93_19465	K03201	virB6, lvhB6;type IV secretion system protein VirB6
BER93_19475	K03204	virB9, lvhB9;type IV secretion system protein VirB9
BER93_19485	K03196	virB11, lvhB11;type IV secretion system protein VirB11 [EC:7.4.2.8]
BER93_19500	K08306	mltC;membrane-bound lytic murein transglycosylase C [EC:4.2.2.-]
BER93_19520	K07473	dinJ;DNA-damage-inducible protein J
BER93_19640	K07473	dinJ;DNA-damage-inducible protein J