BER93_00005 IPR001957 Chromosomal replication control, initiator DnaA BER93_00005 IPR003593 AAA+ ATPase domain BER93_00005 IPR010921 Trp repressor/replication initiator BER93_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal BER93_00005 IPR013317 Chromosomal replication control, initiator (DnaA)/regulator (Hda) BER93_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site BER93_00005 IPR020591 Chromosomal replication control, initiator DnaA-like BER93_00005 IPR024633 DnaA N-terminal domain BER93_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00005 IPR038454 BER93_00005 BER93_00010 IPR001001 DNA polymerase III, beta chain BER93_00010 IPR022634 DNA polymerase III, beta chain, N-terminal BER93_00010 IPR022635 DNA polymerase III, beta chain, C-terminal BER93_00010 IPR022637 DNA polymerase III, beta chain, central BER93_00020 IPR001238 DNA-binding, RecF BER93_00020 IPR003395 RecF/RecN/SMC, N-terminal BER93_00020 IPR018078 DNA-binding, RecF, conserved site BER93_00020 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00025 IPR000565 DNA topoisomerase, type IIA, subunit B BER93_00025 IPR001241 DNA topoisomerase, type IIA BER93_00025 IPR002288 DNA gyrase B subunit, C-terminal BER93_00025 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_00025 IPR006171 Toprim domain BER93_00025 IPR011557 DNA gyrase, subunit B BER93_00025 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 BER93_00025 IPR013759 DNA topoisomerase, type IIA, central domain BER93_00025 IPR013760 DNA topoisomerase, type IIA-like domain BER93_00025 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_00025 IPR018522 DNA topoisomerase, type IIA, conserved site BER93_00025 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_00025 IPR036890 BER93_00025 BER93_00030 IPR003675 CAAX amino terminal protease BER93_00035 IPR001915 Peptidase M48 BER93_00040 IPR011990 Tetratricopeptide-like helical domain BER93_00040 IPR015374 Chs5p-Arf1p binding BER93_00040 IPR019734 Tetratricopeptide repeat BER93_00045 IPR006260 TonB, C-terminal BER93_00045 IPR037682 BER93_00045 BER93_00050 IPR002898 MotA/TolQ/ExbB proton channel BER93_00055 IPR003400 Biopolymer transport protein ExbD/TolR BER93_00060 IPR003400 Biopolymer transport protein ExbD/TolR BER93_00065 IPR002995 Surfeit locus 4 BER93_00075 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ BER93_00075 IPR013785 Aldolase-type TIM barrel BER93_00075 IPR036130 BER93_00075 BER93_00085 IPR001736 Phospholipase D/Transphosphatidylase BER93_00085 IPR022924 Cardiolipin synthase BER93_00085 IPR025202 Phospholipase D-like domain BER93_00100 IPR005017 Membrane protein, aromatic hydrocarbon degradation BER93_00105 IPR022764 Peptidase S54, rhomboid domain BER93_00105 IPR035952 BER93_00105 BER93_00110 IPR014949 Protein of unknown function DUF1820 BER93_00115 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_00115 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain BER93_00115 IPR036291 BER93_00115 BER93_00120 IPR001478 PDZ domain BER93_00120 IPR004447 C-terminal-processing peptidase S41A BER93_00120 IPR005151 Tail specific protease BER93_00120 IPR029045 ClpP/crotonase-like domain BER93_00120 IPR036034 BER93_00120 BER93_00125 IPR011055 Duplicated hybrid motif BER93_00125 IPR016047 Peptidase M23 BER93_00130 IPR003137 Protease-associated domain, PA BER93_00130 IPR007484 Peptidase M28 BER93_00135 IPR025711 PepSY domain BER93_00145 IPR004113 FAD-linked oxidase, C-terminal BER93_00145 IPR006094 FAD linked oxidase, N-terminal BER93_00145 IPR016164 FAD-linked oxidase-like, C-terminal BER93_00145 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BER93_00145 IPR036318 BER93_00145 BER93_00165 IPR002347 Glucose/ribitol dehydrogenase BER93_00165 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_00165 IPR036291 BER93_00165 BER93_00175 IPR002142 Peptidase S49 BER93_00175 IPR004634 Peptidase S49, protease IV BER93_00175 IPR004635 Peptidase S49, SppA BER93_00175 IPR029045 ClpP/crotonase-like domain BER93_00180 IPR002528 Multi antimicrobial extrusion protein BER93_00190 IPR021455 Protein of unknown function DUF3106 BER93_00200 IPR001650 Helicase, C-terminal BER93_00200 IPR005259 Primosomal protein n BER93_00200 IPR011545 DEAD/DEAH box helicase domain BER93_00200 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_00200 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00215 IPR000943 RNA polymerase sigma-70 BER93_00215 IPR007627 RNA polymerase sigma-70 region 2 BER93_00215 IPR007630 RNA polymerase sigma-70 region 4 BER93_00215 IPR009042 RNA polymerase sigma-70 region 1.2 BER93_00215 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria BER93_00215 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_00215 IPR013325 RNA polymerase sigma factor, region 2 BER93_00215 IPR014284 RNA polymerase sigma-70 like domain BER93_00215 IPR036388 BER93_00215 BER93_00220 IPR002043 Uracil-DNA glycosylase BER93_00220 IPR005122 Uracil-DNA glycosylase-like BER93_00220 IPR018085 Uracil-DNA glycosylase, active site BER93_00220 IPR036895 BER93_00220 BER93_00225 IPR001789 Signal transduction response regulator, receiver domain BER93_00225 IPR011006 CheY-like superfamily BER93_00230 IPR004513 ABC transporter, cell division protein FtsX BER93_00235 IPR003439 ABC transporter-like BER93_00235 IPR003593 AAA+ ATPase domain BER93_00235 IPR005286 Cell division protein FtsE, ATP-binding BER93_00235 IPR017871 ABC transporter, conserved site BER93_00235 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00240 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site BER93_00240 IPR001650 Helicase, C-terminal BER93_00240 IPR011545 DEAD/DEAH box helicase domain BER93_00240 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_00240 IPR022077 ATP-dependent RNA helicase RhlB BER93_00240 IPR023554 RNA helicase, ATP-dependent, RhlB-type BER93_00240 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00245 IPR005746 Thioredoxin BER93_00245 IPR013766 Thioredoxin domain BER93_00245 IPR017937 Thioredoxin, conserved site BER93_00245 IPR036249 BER93_00245 BER93_00250 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_00250 IPR003593 AAA+ ATPase domain BER93_00250 IPR004665 Transcription termination factor Rho BER93_00250 IPR011112 Rho termination factor, N-terminal BER93_00250 IPR011113 Rho termination factor, RNA-binding BER93_00250 IPR011129 Cold shock protein BER93_00250 IPR012340 Nucleic acid-binding, OB-fold BER93_00250 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00250 IPR036269 BER93_00250 BER93_00260 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric BER93_00280 IPR018392 LysM domain BER93_00280 IPR036779 BER93_00280 BER93_00285 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 BER93_00285 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal BER93_00285 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF BER93_00295 IPR006143 RND efflux pump, membrane fusion protein BER93_00295 IPR032317 BER93_00295 BER93_00300 IPR001036 Acriflavin resistance protein BER93_00300 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_00305 IPR001036 Acriflavin resistance protein BER93_00305 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_00320 IPR009770 Domain of unknown function DUF1338 BER93_00335 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal BER93_00335 IPR011013 Galactose mutarotase-like domain BER93_00335 IPR013783 Immunoglobulin-like fold BER93_00335 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D BER93_00335 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup BER93_00335 IPR014756 Immunoglobulin E-set BER93_00335 IPR023724 Glucan biosynthesis, MdoD BER93_00340 IPR001267 Thymidine kinase BER93_00340 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00345 IPR005752 DNA helicase, ATP-dependent, RepA type BER93_00345 IPR013986 DExx box DNA helicase domain BER93_00345 IPR014017 DNA helicase, UvrD-like, C-terminal BER93_00345 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00345 IPR034739 BER93_00345 BER93_00375 IPR007432 Protein of unknown function DUF480 BER93_00375 IPR036388 BER93_00375 BER93_00375 IPR036390 BER93_00375 BER93_00400 IPR002123 Phospholipid/glycerol acyltransferase BER93_00400 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase BER93_00400 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB BER93_00405 IPR011032 GroES (chaperonin 10)-like BER93_00405 IPR013149 Alcohol dehydrogenase, C-terminal BER93_00405 IPR013154 Alcohol dehydrogenase GroES-like BER93_00405 IPR020843 Polyketide synthase, enoylreductase BER93_00405 IPR036291 BER93_00405 BER93_00410 IPR007420 Protein of unknown function DUF465 BER93_00415 IPR012337 Ribonuclease H-like domain BER93_00420 IPR002559 Transposase, IS4-like BER93_00420 IPR025161 Putative transposase IS4/IS5 family BER93_00460 IPR002514 Transposase IS3/IS911family BER93_00460 IPR009057 Homeodomain-like BER93_00465 IPR002347 Glucose/ribitol dehydrogenase BER93_00465 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_00465 IPR036291 BER93_00465 BER93_00470 IPR036188 BER93_00470 BER93_00470 IPR038732 BER93_00470 BER93_00475 IPR002559 Transposase, IS4-like BER93_00475 IPR025161 Putative transposase IS4/IS5 family BER93_00480 IPR025161 Putative transposase IS4/IS5 family BER93_00485 IPR010694 Uncharacterised protein family VirK BER93_00490 IPR002559 Transposase, IS4-like BER93_00495 IPR008490 Transposase InsH, N-terminal BER93_00500 IPR036390 BER93_00500 BER93_00510 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site BER93_00510 IPR001650 Helicase, C-terminal BER93_00510 IPR011545 DEAD/DEAH box helicase domain BER93_00510 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_00510 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00515 IPR000089 Biotin/lipoyl attachment BER93_00515 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain BER93_00515 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_00515 IPR004167 E3 binding BER93_00515 IPR011053 Single hybrid motif BER93_00515 IPR023213 Chloramphenicol acetyltransferase-like domain BER93_00515 IPR036625 BER93_00515 BER93_00520 IPR001452 SH3 domain BER93_00520 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 BER93_00520 IPR036028 BER93_00520 BER93_00525 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_00525 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II BER93_00525 IPR029061 Thiamin diphosphate-binding fold BER93_00525 IPR033248 BER93_00525 BER93_00530 IPR001017 Dehydrogenase, E1 component BER93_00530 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha BER93_00530 IPR029061 Thiamin diphosphate-binding fold BER93_00535 IPR004981 Tryptophan 2,3-dioxygenase BER93_00535 IPR037217 BER93_00535 BER93_00540 IPR000109 Proton-dependent oligopeptide transporter family BER93_00540 IPR005279 Amino acid/peptide transporter family BER93_00540 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site BER93_00540 IPR036259 BER93_00540 BER93_00545 IPR036249 BER93_00545 BER93_00555 IPR000835 MarR-type HTH domain BER93_00555 IPR023187 Transcriptional regulator MarR-type, conserved site BER93_00555 IPR036388 BER93_00555 BER93_00555 IPR036390 BER93_00555 BER93_00560 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BER93_00560 IPR005956 4-hydroxyphenylpyruvate dioxygenase BER93_00560 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER93_00565 IPR005708 Homogentisate 1,2-dioxygenase BER93_00565 IPR011051 RmlC-like cupin domain BER93_00565 IPR014710 RmlC-like jelly roll fold BER93_00565 IPR022950 Homogentisate 1,2-dioxygenase, bacterial BER93_00590 IPR003710 Ketopantoate reductase ApbA/PanE BER93_00590 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_00590 IPR013328 Dehydrogenase, multihelical BER93_00590 IPR013332 Ketopantoate reductase, N-terminal domain BER93_00590 IPR013752 Ketopantoate reductase, C-terminal domain BER93_00590 IPR036291 BER93_00590 BER93_00600 IPR000412 ABC-2 transporter BER93_00600 IPR013525 ABC-2 type transporter BER93_00605 IPR003439 ABC transporter-like BER93_00605 IPR003593 AAA+ ATPase domain BER93_00605 IPR017871 ABC transporter, conserved site BER93_00605 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00610 IPR001221 Phenol hydroxylase reductase BER93_00610 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_00610 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_00610 IPR008333 Oxidoreductase, FAD-binding domain BER93_00610 IPR017938 Riboflavin synthase-like beta-barrel BER93_00610 IPR039261 BER93_00610 BER93_00620 IPR000073 Alpha/beta hydrolase fold-1 BER93_00620 IPR002410 Peptidase S33 BER93_00620 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal BER93_00620 IPR029058 Alpha/Beta hydrolase fold BER93_00625 IPR003439 ABC transporter-like BER93_00625 IPR003593 AAA+ ATPase domain BER93_00625 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00630 IPR032688 BER93_00630 BER93_00635 IPR003538 Gram-negative bacterial TonB protein BER93_00635 IPR006260 TonB, C-terminal BER93_00635 IPR037682 BER93_00635 BER93_00650 IPR004045 Glutathione S-transferase, N-terminal BER93_00650 IPR004046 Glutathione S-transferase, C-terminal BER93_00650 IPR036249 BER93_00650 BER93_00650 IPR036282 BER93_00650 BER93_00655 IPR001584 Integrase, catalytic core BER93_00655 IPR012337 Ribonuclease H-like domain BER93_00705 IPR025391 Domain of unknown function DUF4123 BER93_00720 IPR025391 Domain of unknown function DUF4123 BER93_00730 IPR018712 Domain of unknown function DUF2235 BER93_00735 IPR025391 Domain of unknown function DUF4123 BER93_00740 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_00740 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_00740 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_00740 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_00740 IPR037026 BER93_00740 BER93_00745 IPR025669 AAA domain BER93_00745 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_00750 IPR001091 Restriction/modification DNA-methylase BER93_00750 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_00750 IPR002941 DNA methylase N-4/N-6 BER93_00750 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_00760 IPR006430 Phage portal protein, PBSX family BER93_00760 IPR006944 Bacteriophage/Gene transfer agent portal protein BER93_00760 IPR030935 BER93_00760 BER93_00765 IPR004921 Terminase, large subunit BER93_00765 IPR010332 ATPase terminase subunit, putative BER93_00765 IPR035421 BER93_00765 BER93_00770 IPR009228 Capsid scaffolding protein GpO BER93_00775 IPR006441 Bacteriophage P2, GpN, major capsid BER93_00780 IPR010270 Bacteriophage P2, GpM BER93_00785 IPR009225 Bacteriophage head completion protein GpL BER93_00790 IPR008861 Bacteriophage P2, GpX BER93_00790 IPR036779 BER93_00790 BER93_00795 IPR032637 BER93_00795 BER93_00800 IPR008473 Bacteriophage D3, Orf90 BER93_00815 IPR009678 Bacteriophage tail completion protein R BER93_00820 IPR006522 Phage virion morphogensis protein BER93_00825 IPR006949 Baseplate assembly protein J-like, predicted BER93_00825 IPR014507 Baseplate assembly protein J, predicted BER93_00830 IPR006521 Tail protein I BER93_00845 IPR006531 Gp5 N-terminal BER93_00845 IPR013046 Bacteriophage Mu/P2, baseplate assembly BER93_00845 IPR037026 BER93_00845 BER93_00850 IPR007048 GpW/Gp25/anti-adapter protein IraD BER93_00855 IPR020287 Tail sheath protein, C-terminal domain BER93_00855 IPR035089 BER93_00855 BER93_00860 IPR006498 Bacteriophage P2, FII, major tail tube protein BER93_00865 IPR019289 Bacteriophage tail protein Gp41, putative BER93_00870 IPR010090 Phage tail tape measure protein BER93_00875 IPR009734 Myoviridae, GpU BER93_00875 IPR016912 Bacteriophage P2, GpU BER93_00890 IPR002559 Transposase, IS4-like BER93_00890 IPR008490 Transposase InsH, N-terminal BER93_00895 IPR002559 Transposase, IS4-like BER93_00895 IPR008490 Transposase InsH, N-terminal BER93_00915 IPR000943 RNA polymerase sigma-70 BER93_00915 IPR007127 RNA polymerase sigma factor 70, region 1.1 BER93_00915 IPR007624 RNA polymerase sigma-70 region 3 BER93_00915 IPR007627 RNA polymerase sigma-70 region 2 BER93_00915 IPR007630 RNA polymerase sigma-70 region 4 BER93_00915 IPR007631 RNA polymerase sigma factor 70, non-essential domain BER93_00915 IPR009042 RNA polymerase sigma-70 region 1.2 BER93_00915 IPR012760 RNA polymerase sigma factor RpoD, C-terminal BER93_00915 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_00915 IPR013325 RNA polymerase sigma factor, region 2 BER93_00915 IPR014284 RNA polymerase sigma-70 like domain BER93_00915 IPR028630 RNA polymerase sigma factor RpoD BER93_00915 IPR036388 BER93_00915 BER93_00920 IPR003732 D-tyrosyl-tRNA(Tyr) deacylase BER93_00920 IPR023509 D-Tyr tRNAtyr deacylase-like domain BER93_00925 IPR004960 Bacterial lipid A biosynthesis acyltransferase BER93_00930 IPR016181 Acyl-CoA N-acyltransferase BER93_00935 IPR000926 GTP cyclohydrolase II, RibA BER93_00935 IPR032677 BER93_00935 BER93_00935 IPR036144 BER93_00935 BER93_00940 IPR005182 Domain of unknown function DUF304 BER93_00945 IPR005182 Domain of unknown function DUF304 BER93_00945 IPR014529 Uncharacterised conserved protein UCP026631 BER93_00950 IPR007554 CDP-glycerol glycerophosphotransferase BER93_00950 IPR016886 Predicted glycerophosphotransferase UCP028458 BER93_00955 IPR001173 Glycosyltransferase 2-like BER93_00955 IPR029044 Nucleotide-diphospho-sugar transferases BER93_00960 IPR007016 O-antigen ligase-related BER93_00965 IPR038731 BER93_00965 BER93_00970 IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p BER93_00970 IPR004573 rRNA small subunit methyltransferase B BER93_00970 IPR006027 NusB/RsmB/TIM44 BER93_00970 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site BER93_00970 IPR023267 RNA (C5-cytosine) methyltransferase BER93_00970 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_00970 IPR035926 BER93_00970 BER93_00975 IPR001555 Phosphoribosylglycinamide formyltransferase, active site BER93_00975 IPR002376 Formyl transferase, N-terminal BER93_00975 IPR005793 Formyl transferase, C-terminal BER93_00975 IPR005794 Methionyl-tRNA formyltransferase BER93_00975 IPR011034 Formyl transferase, C-terminal-like BER93_00975 IPR036477 BER93_00975 BER93_00975 IPR037022 BER93_00975 BER93_00980 IPR023635 Peptide deformylase BER93_00980 IPR036821 BER93_00980 BER93_00985 IPR018392 LysM domain BER93_00985 IPR036779 BER93_00985 BER93_00990 IPR003488 DNA recombination-mediator protein A BER93_00990 IPR036388 BER93_00990 BER93_00995 IPR007456 Protein of unknown function DUF494 BER93_01000 IPR002559 Transposase, IS4-like BER93_01005 IPR002559 Transposase, IS4-like BER93_01005 IPR025161 Putative transposase IS4/IS5 family BER93_01010 IPR003601 DNA topoisomerase, type IA, domain 2 BER93_01010 IPR003602 DNA topoisomerase, type IA, DNA-binding domain BER93_01010 IPR005733 DNA topoisomerase I, bacterial-type BER93_01010 IPR006171 Toprim domain BER93_01010 IPR013497 DNA topoisomerase, type IA, central BER93_01010 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BER93_01010 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BER93_01010 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BER93_01010 IPR023405 DNA topoisomerase, type IA, core domain BER93_01010 IPR023406 DNA topoisomerase, type IA, active site BER93_01010 IPR025589 Topoisomerase C-terminal repeat BER93_01010 IPR028612 DNA topoisomerase I, type IA BER93_01015 IPR006070 YrdC-like domain BER93_01015 IPR017945 DHBP synthase RibB-like alpha/beta domain BER93_01015 IPR023535 Threonylcarbamoyl-AMP synthase BER93_01040 IPR000531 TonB-dependent receptor, beta-barrel BER93_01040 IPR012910 TonB-dependent receptor, plug BER93_01040 IPR037066 BER93_01040 BER93_01045 IPR000184 Bacterial surface antigen (D15) BER93_01045 IPR010827 Surface antigen variable number BER93_01045 IPR035243 BER93_01045 BER93_01050 IPR007452 Protein of unknown function DUF490 BER93_01065 IPR002372 Pyrrolo-quinoline quinone repeat BER93_01065 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily BER93_01065 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER93_01070 IPR006001 Carbohydrate kinase, thermoresistant glucokinase BER93_01070 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_01075 IPR001927 Sodium:galactoside symporter BER93_01075 IPR036259 BER93_01075 BER93_01085 IPR001789 Signal transduction response regulator, receiver domain BER93_01085 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_01085 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_01085 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_01085 IPR011006 CheY-like superfamily BER93_01085 IPR035965 BER93_01085 BER93_01085 IPR036097 BER93_01085 BER93_01085 IPR036890 BER93_01085 BER93_01085 IPR038377 BER93_01085 BER93_01090 IPR003810 Domain of unknown function DUF204 BER93_01090 IPR022929 Putative manganese efflux pump MntP BER93_01095 IPR005471 Transcription regulator IclR, N-terminal BER93_01095 IPR014757 Transcription regulator IclR, C-terminal BER93_01095 IPR029016 GAF domain-like BER93_01095 IPR036388 BER93_01095 BER93_01095 IPR036390 BER93_01095 BER93_01100 IPR005275 L-fucose permease FucP BER93_01100 IPR011701 Major facilitator superfamily BER93_01100 IPR036259 BER93_01100 BER93_01105 IPR008000 Rhamnose mutarotase BER93_01105 IPR011008 Dimeric alpha-beta barrel BER93_01110 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER93_01110 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER93_01110 IPR029017 Enolase N-terminal domain-like BER93_01110 IPR029065 Enolase C-terminal domain-like BER93_01110 IPR036849 BER93_01110 BER93_01115 IPR011234 Fumarylacetoacetase, C-terminal-related BER93_01115 IPR036663 BER93_01115 BER93_01120 IPR002347 Glucose/ribitol dehydrogenase BER93_01120 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_01120 IPR036291 BER93_01120 BER93_01125 IPR006680 Amidohydrolase 1 BER93_01125 IPR032466 BER93_01125 BER93_01130 IPR023210 NADP-dependent oxidoreductase domain BER93_01130 IPR036812 BER93_01130 BER93_01135 IPR000792 Transcription regulator LuxR, C-terminal BER93_01135 IPR001789 Signal transduction response regulator, receiver domain BER93_01135 IPR011006 CheY-like superfamily BER93_01135 IPR016032 Signal transduction response regulator, C-terminal effector BER93_01135 IPR036388 BER93_01135 BER93_01140 IPR000873 AMP-dependent synthetase/ligase BER93_01140 IPR011904 Acetate-CoA ligase BER93_01140 IPR020845 AMP-binding, conserved site BER93_01140 IPR025110 AMP-binding enzyme C-terminal domain BER93_01140 IPR032387 BER93_01140 BER93_01150 IPR007436 Protein of unknown function DUF485 BER93_01155 IPR001734 Sodium/solute symporter BER93_01155 IPR018212 Sodium/solute symporter, conserved site BER93_01155 IPR038377 BER93_01155 BER93_01160 IPR004808 AP endonuclease 1 BER93_01160 IPR005135 Endonuclease/exonuclease/phosphatase BER93_01160 IPR020847 AP endonuclease 1, binding site BER93_01160 IPR020848 AP endonuclease 1, conserved site BER93_01160 IPR036691 BER93_01160 BER93_01165 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V BER93_01165 IPR011057 Mss4-like BER93_01170 IPR007341 Transglycosylase-associated protein BER93_01175 IPR008278 4'-phosphopantetheinyl transferase superfamily BER93_01175 IPR037143 BER93_01175 BER93_01185 IPR003682 rRNA small subunit methyltransferase G BER93_01185 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_01190 IPR001036 Acriflavin resistance protein BER93_01200 IPR001383 Ribosomal protein L28 BER93_01200 IPR026569 Ribosomal protein L28/L24 BER93_01200 IPR034704 BER93_01200 BER93_01200 IPR037147 BER93_01200 BER93_01205 IPR001705 Ribosomal protein L33 BER93_01205 IPR011332 Zinc-binding ribosomal protein BER93_01205 IPR018264 Ribosomal protein L33, conserved site BER93_01205 IPR038584 BER93_01205 BER93_01210 IPR001736 Phospholipase D/Transphosphatidylase BER93_01210 IPR022924 Cardiolipin synthase BER93_01210 IPR025202 Phospholipase D-like domain BER93_01210 IPR027379 Cardiolipin synthase N-terminal BER93_01215 IPR036188 BER93_01215 BER93_01215 IPR038732 BER93_01215 BER93_01220 IPR005753 DNA helicase, ATP-dependent, UvrD type BER93_01220 IPR013986 DExx box DNA helicase domain BER93_01220 IPR014017 DNA helicase, UvrD-like, C-terminal BER93_01220 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_01220 IPR034739 BER93_01220 BER93_01230 IPR019223 Domain of unknown function DUF2147 BER93_01235 IPR002559 Transposase, IS4-like BER93_01235 IPR008490 Transposase InsH, N-terminal BER93_01250 IPR003142 Biotin protein ligase, C-terminal BER93_01250 IPR004143 Biotin/lipoate A/B protein ligase BER93_01250 IPR004408 Biotin--acetyl-CoA-carboxylase ligase BER93_01250 IPR008988 Transcriptional repressor, C-terminal BER93_01250 IPR013196 Helix-turn-helix, type 11 BER93_01250 IPR030855 BER93_01250 BER93_01250 IPR036388 BER93_01250 BER93_01250 IPR036390 BER93_01250 BER93_01255 IPR004619 Type III pantothenate kinase BER93_01260 IPR007730 Sporulation-related domain BER93_01260 IPR036680 BER93_01260 BER93_01275 IPR001584 Integrase, catalytic core BER93_01275 IPR012337 Ribonuclease H-like domain BER93_01275 IPR025948 HTH-like domain BER93_01275 IPR036397 BER93_01275 BER93_01280 IPR002514 Transposase IS3/IS911family BER93_01280 IPR009057 Homeodomain-like BER93_01300 IPR008490 Transposase InsH, N-terminal BER93_01310 IPR000073 Alpha/beta hydrolase fold-1 BER93_01310 IPR029058 Alpha/Beta hydrolase fold BER93_01325 IPR002305 Aminoacyl-tRNA synthetase, class Ic BER93_01325 IPR002306 Tryptophan-tRNA ligase BER93_01325 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_01325 IPR024109 Tryptophan-tRNA ligase, bacterial-type BER93_01325 IPR036913 BER93_01325 BER93_01330 IPR012556 Entericidin EcnAB BER93_01335 IPR012556 Entericidin EcnAB BER93_01340 IPR006035 Ureohydrolase BER93_01340 IPR014033 Arginase BER93_01340 IPR020855 Ureohydrolase, manganese-binding site BER93_01340 IPR023696 Ureohydrolase domain BER93_01350 IPR002559 Transposase, IS4-like BER93_01360 IPR002559 Transposase, IS4-like BER93_01360 IPR008490 Transposase InsH, N-terminal BER93_01365 IPR018094 Thymidylate kinase BER93_01365 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_01365 IPR039430 BER93_01365 BER93_01370 IPR002559 Transposase, IS4-like BER93_01370 IPR008490 Transposase InsH, N-terminal BER93_01375 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase BER93_01375 IPR016174 Di-haem cytochrome, transmembrane BER93_01380 IPR011614 Catalase core domain BER93_01380 IPR020835 Catalase-like domain BER93_01380 IPR024168 Catalase, SrpA-type, predicted BER93_01385 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal BER93_01385 IPR011356 Leucine aminopeptidase/peptidase B BER93_01390 IPR006439 HAD hydrolase, subfamily IA BER93_01390 IPR023214 HAD-like domain BER93_01390 IPR036412 BER93_01390 BER93_01395 IPR002549 Uncharacterised protein family UPF0118 BER93_01415 IPR001478 PDZ domain BER93_01415 IPR001940 Peptidase S1C BER93_01415 IPR009003 Trypsin-like cysteine/serine peptidase domain BER93_01415 IPR011782 Peptidase S1C, Do BER93_01415 IPR036034 BER93_01415 BER93_01425 IPR021747 Protein of unknown function DUF3313 BER93_01435 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_01435 IPR003660 HAMP linker domain BER93_01435 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_01435 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_01435 IPR036097 BER93_01435 BER93_01435 IPR036890 BER93_01435 BER93_01440 IPR001789 Signal transduction response regulator, receiver domain BER93_01440 IPR001867 Signal transduction response regulator, C-terminal BER93_01440 IPR011006 CheY-like superfamily BER93_01440 IPR016032 Signal transduction response regulator, C-terminal effector BER93_01440 IPR036388 BER93_01440 BER93_01455 IPR002559 Transposase, IS4-like BER93_01455 IPR025161 Putative transposase IS4/IS5 family BER93_01460 IPR025668 Transposase DDE domain BER93_01470 IPR002559 Transposase, IS4-like BER93_01475 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain BER93_01475 IPR010099 Sugar nucleotide epimerase YfcH,-like putative BER93_01475 IPR013549 Domain of unknown function DUF1731 BER93_01475 IPR036291 BER93_01475 BER93_01480 IPR025419 Domain of unknown function DUF4142 BER93_01495 IPR002559 Transposase, IS4-like BER93_01495 IPR025161 Putative transposase IS4/IS5 family BER93_01515 IPR002559 Transposase, IS4-like BER93_01530 IPR001233 tRNA-splicing ligase, RtcB BER93_01530 IPR036025 BER93_01530 BER93_01535 IPR001647 DNA-binding HTH domain, TetR-type BER93_01535 IPR009057 Homeodomain-like BER93_01540 IPR001041 2Fe-2S ferredoxin-type domain BER93_01540 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_01540 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_01540 IPR001834 NADH:cytochrome b5 reductase (CBR) BER93_01540 IPR008333 Oxidoreductase, FAD-binding domain BER93_01540 IPR012675 Beta-grasp domain BER93_01540 IPR017938 Riboflavin synthase-like beta-barrel BER93_01540 IPR036010 BER93_01540 BER93_01540 IPR039261 BER93_01540 BER93_01545 IPR005804 Fatty acid desaturase, type 1 BER93_01550 IPR001633 EAL domain BER93_01550 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain BER93_01550 IPR035919 BER93_01550 BER93_01555 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER93_01555 IPR002446 Lipocalin, bacterial BER93_01555 IPR012674 Calycin BER93_01555 IPR022271 Lipocalin, ApoD type BER93_01555 IPR022272 Lipocalin family conserved site BER93_01565 IPR000523 Magnesium chelatase, ChlI subunit BER93_01565 IPR001208 Mini-chromosome maintenance, DNA-dependent ATPase BER93_01565 IPR003593 AAA+ ATPase domain BER93_01565 IPR004482 Mg chelatase-related protein BER93_01565 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_01565 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_01565 IPR025158 Mg chelatase-related protein, C-terminal domain BER93_01565 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_01570 IPR007475 Membrane fusogenic activity BER93_01575 IPR002187 Nitrogen regulatory protein PII BER93_01575 IPR002332 Nitrogen regulatory protein P-II, urydylation site BER93_01575 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER93_01575 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_01575 IPR017918 Nitrogen regulatory protein PII, conserved site BER93_01580 IPR011496 Beta-N-acetylglucosaminidase BER93_01580 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal BER93_01580 IPR017853 Glycoside hydrolase, superfamily BER93_01580 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like BER93_01590 IPR039519 BER93_01590 BER93_01600 IPR001045 Spermidine/spermine synthases family BER93_01600 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_01600 IPR030373 BER93_01600 BER93_01600 IPR035246 BER93_01600 BER93_01600 IPR037163 BER93_01600 BER93_01605 IPR000183 Ornithine/DAP/Arg decarboxylase BER93_01605 IPR002985 Arginine decarboxylase BER93_01605 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_01605 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal BER93_01605 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BER93_01605 IPR029066 PLP-binding barrel BER93_01610 IPR002559 Transposase, IS4-like BER93_01610 IPR008490 Transposase InsH, N-terminal BER93_01625 IPR021357 Protein of unknown function DUF2782 BER93_01630 IPR001098 DNA-directed DNA polymerase, family A, palm domain BER93_01630 IPR002298 DNA polymerase A BER93_01630 IPR002421 5'-3' exonuclease, N-terminal BER93_01630 IPR002562 3'-5' exonuclease domain BER93_01630 IPR008918 Helix-hairpin-helix motif, class 2 BER93_01630 IPR012337 Ribonuclease H-like domain BER93_01630 IPR018320 DNA polymerase 1 BER93_01630 IPR019760 DNA-directed DNA polymerase, family A, conserved site BER93_01630 IPR020045 5'-3' exonuclease, C-terminal domain BER93_01630 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal BER93_01630 IPR029060 PIN domain-like BER93_01630 IPR036279 BER93_01630 BER93_01630 IPR036397 BER93_01630 BER93_01635 IPR001260 Coproporphyrinogen III oxidase, aerobic BER93_01635 IPR018375 Coproporphyrinogen III oxidase, conserved site BER93_01635 IPR036406 BER93_01635 BER93_01655 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_01655 IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal BER93_01655 IPR011042 Six-bladed beta-propeller, TolB-like BER93_01655 IPR029058 Alpha/Beta hydrolase fold BER93_01660 IPR000873 AMP-dependent synthetase/ligase BER93_01665 IPR035959 BER93_01665 BER93_01670 IPR006905 Tryptophan halogenase BER93_01670 IPR036188 BER93_01670 BER93_01675 IPR009081 Acyl carrier protein-like BER93_01675 IPR036736 BER93_01675 BER93_01685 IPR002123 Phospholipid/glycerol acyltransferase BER93_01685 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase BER93_01690 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ BER93_01690 IPR016962 Dehydrase, ECs4332, predicted BER93_01690 IPR029069 HotDog domain BER93_01695 IPR004960 Bacterial lipid A biosynthesis acyltransferase BER93_01695 IPR014548 Predicted acyltransferase BER93_01705 IPR004869 Membrane transport protein, MMPL domain BER93_01710 IPR029069 HotDog domain BER93_01720 IPR002347 Glucose/ribitol dehydrogenase BER93_01720 IPR036291 BER93_01720 BER93_01725 IPR006905 Tryptophan halogenase BER93_01725 IPR036188 BER93_01725 BER93_01730 IPR001173 Glycosyltransferase 2-like BER93_01730 IPR029044 Nucleotide-diphospho-sugar transferases BER93_01735 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_01735 IPR016039 Thiolase-like BER93_01740 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_01740 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_01740 IPR016039 Thiolase-like BER93_01740 IPR018201 Beta-ketoacyl synthase, active site BER93_01740 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_01745 IPR027354 YcgL domain BER93_01745 IPR038068 BER93_01745 BER93_01750 IPR002110 Ankyrin repeat BER93_01750 IPR020683 Ankyrin repeat-containing domain BER93_01750 IPR036770 BER93_01750 BER93_01755 IPR016919 Uncharacterised conserved protein UCP029416, tyrosine-protein phosphatase, Mlr4629 BER93_01755 IPR023485 Phosphotyrosine protein phosphatase I superfamily BER93_01755 IPR036196 BER93_01755 BER93_01760 IPR008928 Six-hairpin glycosidase-like BER93_01760 IPR011613 Glycoside hydrolase family 15 BER93_01760 IPR012341 Six-hairpin glycosidase BER93_01765 IPR001282 Glucose-6-phosphate dehydrogenase BER93_01765 IPR019796 Glucose-6-phosphate dehydrogenase, active site BER93_01765 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding BER93_01765 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal BER93_01765 IPR036291 BER93_01765 BER93_01770 IPR003148 Regulator of K+ conductance, N-terminal BER93_01770 IPR036291 BER93_01770 BER93_01775 IPR001148 Alpha carbonic anhydrase BER93_01775 IPR018338 Carbonic anhydrase, alpha-class, conserved site BER93_01775 IPR036398 BER93_01775 BER93_01780 IPR000644 CBS domain BER93_01780 IPR006667 SLC41 divalent cation transporters, integral membrane domain BER93_01780 IPR006668 Magnesium transporter, MgtE intracellular domain BER93_01780 IPR006669 Magnesium transporter MgtE BER93_01780 IPR036739 BER93_01780 BER93_01780 IPR038048 BER93_01780 BER93_01780 IPR038076 BER93_01780 BER93_01785 IPR000182 GNAT domain BER93_01785 IPR003781 CoA-binding BER93_01785 IPR013815 ATP-grasp fold, subdomain 1 BER93_01785 IPR016102 Succinyl-CoA synthetase-like BER93_01785 IPR016181 Acyl-CoA N-acyltransferase BER93_01785 IPR032875 BER93_01785 BER93_01785 IPR036291 BER93_01785 BER93_01790 IPR007427 Protein of unknown function DUF475 BER93_01795 IPR000788 Ribonucleotide reductase large subunit, C-terminal BER93_01795 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal BER93_01795 IPR013346 Ribonucleotide reductase, class I , alpha subunit BER93_01795 IPR013509 Ribonucleotide reductase large subunit, N-terminal BER93_01800 IPR000358 Ribonucleotide reductase small subunit BER93_01800 IPR009078 Ferritin-like superfamily BER93_01800 IPR012348 Ribonucleotide reductase-related BER93_01805 IPR008254 Flavodoxin/nitric oxide synthase BER93_01805 IPR010088 Ribonucleotide reductase-associated flavodoxin, putative BER93_01805 IPR029039 Flavoprotein-like BER93_01810 IPR013766 Thioredoxin domain BER93_01810 IPR036249 BER93_01810 BER93_01820 IPR004254 Hly-III-related BER93_01825 IPR001650 Helicase, C-terminal BER93_01825 IPR011545 DEAD/DEAH box helicase domain BER93_01825 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_01825 IPR018973 DEAD/DEAH-box helicase, putative BER93_01825 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_01830 IPR012337 Ribonuclease H-like domain BER93_01830 IPR038720 BER93_01830 BER93_01835 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain BER93_01835 IPR030395 BER93_01835 BER93_01840 IPR000531 TonB-dependent receptor, beta-barrel BER93_01840 IPR010104 Bacterial TonB-dependent receptor BER93_01840 IPR012910 TonB-dependent receptor, plug BER93_01840 IPR036942 BER93_01840 BER93_01840 IPR037066 BER93_01840 BER93_01845 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase BER93_01845 IPR012390 Phosphoesterase SP1827 BER93_01845 IPR015069 Domain of unknown function DUF1868 BER93_01860 IPR001036 Acriflavin resistance protein BER93_01860 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_01865 IPR001036 Acriflavin resistance protein BER93_01865 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_01875 IPR001036 Acriflavin resistance protein BER93_01885 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_01895 IPR029465 TupA-like ATPgrasp protein BER93_01900 IPR014944 Toxin SymE-like BER93_01925 IPR001584 Integrase, catalytic core BER93_01925 IPR012337 Ribonuclease H-like domain BER93_01925 IPR036397 BER93_01925 BER93_01935 IPR002514 Transposase IS3/IS911family BER93_01935 IPR009057 Homeodomain-like BER93_01940 IPR010758 Trans-2-enoyl-CoA reductase BER93_01940 IPR024906 Enoyl reductase FAD binding domain BER93_01940 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative BER93_01945 IPR018673 Protein of unknown function DUF2141 BER93_01950 IPR004294 Carotenoid oxygenase BER93_01960 IPR000262 FMN-dependent dehydrogenase BER93_01960 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site BER93_01960 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent BER93_01960 IPR013785 Aldolase-type TIM barrel BER93_01960 IPR020920 L-lactate dehydrogenase, bacterial BER93_01975 IPR000796 Aspartate/other aminotransferase BER93_01975 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site BER93_01975 IPR004839 Aminotransferase, class I/classII BER93_01975 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_01975 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_01975 IPR015424 Pyridoxal phosphate-dependent transferase BER93_01980 IPR000146 Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase BER93_01980 IPR028343 Fructose-1,6-bisphosphatase BER93_01980 IPR033391 BER93_01980 BER93_01985 IPR011050 Pectin lyase fold/virulence factor BER93_01985 IPR012334 Pectin lyase fold BER93_01985 IPR032153 BER93_01985 BER93_01985 IPR039448 BER93_01985 BER93_01990 IPR010342 Protein of unknown function DUF938 BER93_01990 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_01995 IPR024787 EcsC protein BER93_02005 IPR019291 Host attachment protein BER93_02010 IPR000086 NUDIX hydrolase domain BER93_02010 IPR015797 NUDIX hydrolase domain-like BER93_02010 IPR020084 NUDIX hydrolase, conserved site BER93_02010 IPR020476 NUDIX hydrolase BER93_02015 IPR016040 NAD(P)-binding domain BER93_02015 IPR036291 BER93_02015 BER93_02020 IPR001570 Peptidase M4, C-terminal BER93_02020 IPR013856 Peptidase M4 domain BER93_02020 IPR023612 Peptidase M4 BER93_02020 IPR027268 BER93_02020 BER93_02035 IPR002559 Transposase, IS4-like BER93_02040 IPR025161 Putative transposase IS4/IS5 family BER93_02050 IPR002155 Thiolase BER93_02050 IPR016039 Thiolase-like BER93_02050 IPR020616 Thiolase, N-terminal BER93_02050 IPR020617 Thiolase, C-terminal BER93_02055 IPR005254 Heme biosynthesis-associated TPR protein BER93_02055 IPR010817 HemY, N-terminal BER93_02055 IPR011990 Tetratricopeptide-like helical domain BER93_02060 IPR007470 HemX BER93_02065 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase BER93_02065 IPR036108 BER93_02065 BER93_02070 IPR012660 Thioesterase, putative BER93_02070 IPR029069 HotDog domain BER93_02080 IPR001763 Rhodanese-like domain BER93_02080 IPR036873 BER93_02080 BER93_02085 IPR003708 Bacterial protein export chaperone SecB BER93_02085 IPR035958 BER93_02085 BER93_02090 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal BER93_02090 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent BER93_02090 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_02090 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal BER93_02090 IPR013328 Dehydrogenase, multihelical BER93_02090 IPR036291 BER93_02090 BER93_02095 IPR023614 Porin domain BER93_02095 IPR026364 Sulfation-dependent quorum factor, Ax21 family BER93_02100 IPR000399 TPP-binding enzyme, conserved site BER93_02100 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding BER93_02100 IPR012000 Thiamine pyrophosphate enzyme, central domain BER93_02100 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain BER93_02100 IPR029035 DHS-like NAD/FAD-binding domain BER93_02100 IPR029061 Thiamin diphosphate-binding fold BER93_02110 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_02110 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase BER93_02110 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_02110 IPR029028 Alpha/beta knot methyltransferases BER93_02115 IPR025294 Protein of unknown function DUF4156 BER93_02120 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal BER93_02120 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_02120 IPR016039 Thiolase-like BER93_02130 IPR002514 Transposase IS3/IS911family BER93_02130 IPR009057 Homeodomain-like BER93_02135 IPR001584 Integrase, catalytic core BER93_02135 IPR012337 Ribonuclease H-like domain BER93_02135 IPR025948 HTH-like domain BER93_02135 IPR036397 BER93_02135 BER93_02150 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_02150 IPR013123 RNA 2-O ribose methyltransferase, substrate binding BER93_02150 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_02150 IPR029028 Alpha/beta knot methyltransferases BER93_02150 IPR029064 50S ribosomal protein L30e-like BER93_02160 IPR002480 DAHP synthetase, class II BER93_02165 IPR006685 Mechanosensitive ion channel MscS BER93_02165 IPR010920 Like-Sm (LSM) domain BER93_02175 IPR021125 Protein of unknown function DUF2127 BER93_02180 IPR000640 Translation elongation factor EFG, V domain BER93_02180 IPR000795 Elongation factor, GTP-binding domain BER93_02180 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 BER93_02180 IPR005225 Small GTP-binding protein domain BER93_02180 IPR006298 GTP-binding protein TypA BER93_02180 IPR009000 Translation protein, beta-barrel domain BER93_02180 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_02180 IPR031157 BER93_02180 BER93_02180 IPR035647 BER93_02180 BER93_02185 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain BER93_02185 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site BER93_02185 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase BER93_02185 IPR029000 Cyclophilin-like domain BER93_02190 IPR001236 Lactate/malate dehydrogenase, N-terminal BER93_02190 IPR001557 L-lactate/malate dehydrogenase BER93_02190 IPR010945 Malate dehydrogenase, type 2 BER93_02190 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal BER93_02190 IPR022383 Lactate/malate dehydrogenase, C-terminal BER93_02190 IPR036291 BER93_02190 BER93_02210 IPR011105 Cell wall hydrolase, SleB BER93_02215 IPR002559 Transposase, IS4-like BER93_02215 IPR008490 Transposase InsH, N-terminal BER93_02225 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal BER93_02225 IPR013785 Aldolase-type TIM barrel BER93_02225 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_02225 IPR036188 BER93_02225 BER93_02230 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site BER93_02230 IPR011032 GroES (chaperonin 10)-like BER93_02230 IPR013154 Alcohol dehydrogenase GroES-like BER93_02230 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 BER93_02230 IPR020843 Polyketide synthase, enoylreductase BER93_02230 IPR036291 BER93_02230 BER93_02235 IPR006664 Outer membrane protein, bacterial BER93_02235 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_02235 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel BER93_02235 IPR027385 Outer membrane protein beta-barrel BER93_02235 IPR028974 TSP type-3 repeat BER93_02235 IPR036737 BER93_02235 BER93_02245 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_02245 IPR002942 RNA-binding S4 domain BER93_02245 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_02245 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_02245 IPR020103 Pseudouridine synthase, catalytic domain BER93_02245 IPR036986 BER93_02245 BER93_02255 IPR004839 Aminotransferase, class I/classII BER93_02255 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase BER93_02255 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_02255 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_02255 IPR015424 Pyridoxal phosphate-dependent transferase BER93_02260 IPR005669 Thiosulphate/Sulfate-binding protein BER93_02260 IPR034408 BER93_02260 BER93_02265 IPR000515 MetI-like domain BER93_02265 IPR005667 Sulphate ABC transporter permease protein 2 BER93_02265 IPR011865 Sulphate ABC transporter, permease protein CysT BER93_02265 IPR035906 BER93_02265 BER93_02270 IPR000515 MetI-like domain BER93_02270 IPR005667 Sulphate ABC transporter permease protein 2 BER93_02270 IPR011866 Sulphate ABC transporter, permease protein CysW BER93_02270 IPR035906 BER93_02270 BER93_02275 IPR003439 ABC transporter-like BER93_02275 IPR003593 AAA+ ATPase domain BER93_02275 IPR005666 Sulphate transport system permease protein 1 BER93_02275 IPR008995 Molybdate/tungstate binding, C-terminal BER93_02275 IPR017871 ABC transporter, conserved site BER93_02275 IPR024765 TOBE-like domain BER93_02275 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_02280 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site BER93_02280 IPR010239 Conserved hypothetical protein CHP02001 BER93_02285 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_02285 IPR004627 L-threonine 3-dehydrogenase BER93_02285 IPR011032 GroES (chaperonin 10)-like BER93_02285 IPR013149 Alcohol dehydrogenase, C-terminal BER93_02285 IPR013154 Alcohol dehydrogenase GroES-like BER93_02285 IPR020843 Polyketide synthase, enoylreductase BER93_02285 IPR036291 BER93_02285 BER93_02290 IPR000531 TonB-dependent receptor, beta-barrel BER93_02290 IPR010917 TonB-dependent receptor, conserved site BER93_02290 IPR012910 TonB-dependent receptor, plug BER93_02290 IPR037066 BER93_02290 BER93_02295 IPR007312 Phosphoesterase BER93_02295 IPR008475 Bacterial phospholipase C, C-terminal domain BER93_02295 IPR017767 Bacterial phospholipase C, phosphocholine-specific BER93_02295 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha BER93_02295 IPR017850 Alkaline-phosphatase-like, core domain BER93_02295 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER93_02300 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site BER93_02300 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_02300 IPR029033 Histidine phosphatase superfamily BER93_02305 IPR002559 Transposase, IS4-like BER93_02305 IPR025161 Putative transposase IS4/IS5 family BER93_02315 IPR001801 Histone-like protein H-NS BER93_02315 IPR027444 Histone-like protein H-NS, C-terminal domain BER93_02320 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_02320 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_02320 IPR011837 Glycogen debranching enzyme, GlgX type BER93_02320 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_02320 IPR013783 Immunoglobulin-like fold BER93_02320 IPR014756 Immunoglobulin E-set BER93_02320 IPR017853 Glycoside hydrolase, superfamily BER93_02335 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX BER93_02335 IPR013651 ATP-grasp fold, RimK-type BER93_02335 IPR013815 ATP-grasp fold, subdomain 1 BER93_02335 IPR023533 Ribosomal S6 modification enzyme RimK BER93_02345 IPR001789 Signal transduction response regulator, receiver domain BER93_02345 IPR001867 Signal transduction response regulator, C-terminal BER93_02345 IPR011006 CheY-like superfamily BER93_02345 IPR036388 BER93_02345 BER93_02350 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_02350 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_02350 IPR036097 BER93_02350 BER93_02350 IPR036890 BER93_02350 BER93_02370 IPR001783 Lumazine-binding protein BER93_02370 IPR017938 Riboflavin synthase-like beta-barrel BER93_02370 IPR023366 ATP synthase subunit alpha-like domain BER93_02370 IPR026017 Lumazine-binding domain BER93_02375 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB BER93_02375 IPR017945 DHBP synthase RibB-like alpha/beta domain BER93_02375 IPR032677 BER93_02375 BER93_02375 IPR036144 BER93_02375 BER93_02380 IPR002180 6,7-dimethyl-8-ribityllumazine synthase BER93_02380 IPR034964 BER93_02380 BER93_02380 IPR036467 BER93_02380 BER93_02385 IPR006027 NusB/RsmB/TIM44 BER93_02385 IPR011605 NusB antitermination factor BER93_02385 IPR035926 BER93_02385 BER93_02390 IPR006283 Thiamine-monophosphate kinase BER93_02390 IPR010918 AIR synthase-related protein, C-terminal domain BER93_02390 IPR016188 PurM, N-terminal-like BER93_02390 IPR036676 BER93_02390 BER93_02390 IPR036921 BER93_02390 BER93_02425 IPR006336 Glutamate--cysteine ligase, GCS2 BER93_02425 IPR011556 Glutamate--cysteine ligase, plant BER93_02425 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_02425 IPR035434 BER93_02425 BER93_02430 IPR006073 GTP binding domain BER93_02430 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC BER93_02430 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_02435 IPR009056 Cytochrome c-like domain BER93_02435 IPR024167 Cytochrome c4 BER93_02435 IPR036909 BER93_02435 BER93_02440 IPR012336 Thioredoxin-like fold BER93_02440 IPR017937 Thioredoxin, conserved site BER93_02440 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL BER93_02440 IPR036249 BER93_02440 BER93_02445 IPR001853 DSBA-like thioredoxin domain BER93_02445 IPR036249 BER93_02445 BER93_02450 IPR005135 Endonuclease/exonuclease/phosphatase BER93_02450 IPR036691 BER93_02450 BER93_02455 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_02455 IPR011032 GroES (chaperonin 10)-like BER93_02455 IPR013149 Alcohol dehydrogenase, C-terminal BER93_02455 IPR013154 Alcohol dehydrogenase GroES-like BER93_02455 IPR020843 Polyketide synthase, enoylreductase BER93_02455 IPR036291 BER93_02455 BER93_02460 IPR011989 Armadillo-like helical BER93_02460 IPR016024 Armadillo-type fold BER93_02465 IPR002559 Transposase, IS4-like BER93_02475 IPR008490 Transposase InsH, N-terminal BER93_02480 IPR002347 Glucose/ribitol dehydrogenase BER93_02480 IPR036291 BER93_02480 BER93_02490 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_02490 IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal BER93_02490 IPR029058 Alpha/Beta hydrolase fold BER93_02490 IPR038554 BER93_02490 BER93_02495 IPR011673 Protein of unknown function DUF1615 BER93_02500 IPR008471 MnmC-like methyltransferase BER93_02500 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_02515 IPR002293 Amino acid/polyamine transporter I BER93_02515 IPR004840 Amino acid permease, conserved site BER93_02515 IPR004841 Amino acid permease/ SLC12A domain BER93_02525 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB BER93_02540 IPR002838 Mitochondrial biogenesis protein AIM24 BER93_02540 IPR016031 Tryptophan RNA-binding attenuator protein-like domain BER93_02540 IPR036983 BER93_02540 BER93_02545 IPR001661 Glycoside hydrolase, family 37 BER93_02545 IPR008928 Six-hairpin glycosidase-like BER93_02545 IPR012341 Six-hairpin glycosidase BER93_02545 IPR018232 Glycoside hydrolase, family 37, conserved site BER93_02545 IPR023720 Trehalase, periplasmic BER93_02565 IPR007863 Peptidase M16, C-terminal domain BER93_02565 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like BER93_02565 IPR011765 Peptidase M16, N-terminal BER93_02570 IPR000014 PAS domain BER93_02570 IPR000160 GGDEF domain BER93_02570 IPR001610 PAC motif BER93_02570 IPR003018 GAF domain BER93_02570 IPR013656 PAS fold-4 BER93_02570 IPR013767 PAS fold BER93_02570 IPR029016 GAF domain-like BER93_02570 IPR029787 Nucleotide cyclase BER93_02570 IPR035965 BER93_02570 BER93_02585 IPR001547 Glycoside hydrolase, family 5 BER93_02585 IPR001919 Cellulose-binding domain, family II, bacterial-type BER93_02585 IPR008965 Carbohydrate-binding domain BER93_02585 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain BER93_02585 IPR017853 Glycoside hydrolase, superfamily BER93_02585 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_02590 IPR002645 STAS domain BER93_02590 IPR011547 Sulphate transporter BER93_02590 IPR036513 BER93_02590 BER93_02600 IPR001173 Glycosyltransferase 2-like BER93_02600 IPR023725 Glucan biosynthesis glucosyltransferase H BER93_02600 IPR029044 Nucleotide-diphospho-sugar transferases BER93_02605 IPR003140 Phospholipase/carboxylesterase/thioesterase BER93_02605 IPR029058 Alpha/Beta hydrolase fold BER93_02615 IPR001789 Signal transduction response regulator, receiver domain BER93_02615 IPR007492 LytTR DNA-binding domain BER93_02615 IPR011006 CheY-like superfamily BER93_02620 IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase BER93_02620 IPR022417 Porphobilinogen deaminase, N-terminal BER93_02620 IPR022418 Porphobilinogen deaminase, C-terminal BER93_02620 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site BER93_02620 IPR036803 BER93_02620 BER93_02625 IPR007433 Protein of unknown function DUF481 BER93_02630 IPR013196 Helix-turn-helix, type 11 BER93_02630 IPR026881 WYL domain BER93_02630 IPR036388 BER93_02630 BER93_02630 IPR036390 BER93_02630 BER93_02635 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER93_02635 IPR012674 Calycin BER93_02635 IPR022271 Lipocalin, ApoD type BER93_02635 IPR022272 Lipocalin family conserved site BER93_02645 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_02645 IPR002470 Peptidase S9A, prolyl oligopeptidase BER93_02645 IPR023302 Peptidase S9A, N-terminal domain BER93_02645 IPR029058 Alpha/Beta hydrolase fold BER93_02655 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site BER93_02655 IPR004839 Aminotransferase, class I/classII BER93_02655 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_02655 IPR015424 Pyridoxal phosphate-dependent transferase BER93_02660 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_02660 IPR002470 Peptidase S9A, prolyl oligopeptidase BER93_02660 IPR002471 Peptidase S9, serine active site BER93_02660 IPR023302 Peptidase S9A, N-terminal domain BER93_02660 IPR029058 Alpha/Beta hydrolase fold BER93_02670 IPR001653 Diaminopimelate epimerase, DapF BER93_02670 IPR018510 Diaminopimelate epimerase, active site BER93_02675 IPR007435 Protein of unknown function DUF484 BER93_02675 IPR029016 GAF domain-like BER93_02680 IPR002104 Integrase, catalytic BER93_02680 IPR004107 Integrase, SAM-like, N-terminal BER93_02680 IPR010998 Integrase, Lambda-type, N-terminal BER93_02680 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_02680 IPR011931 Tyrosine recombinase XerC BER93_02680 IPR013762 Integrase-like, catalytic core BER93_02680 IPR023009 Tyrosine recombinase XerC/XerD BER93_02685 IPR001353 Proteasome, subunit alpha/beta BER93_02685 IPR022281 ATP-dependent protease, HslV subunit BER93_02685 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_02690 IPR003593 AAA+ ATPase domain BER93_02690 IPR003959 ATPase, AAA-type, core BER93_02690 IPR004491 Heat shock protein HslU BER93_02690 IPR019489 Clp ATPase, C-terminal BER93_02690 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_02700 IPR002125 CMP/dCMP deaminase, zinc-binding BER93_02700 IPR016193 Cytidine deaminase-like BER93_02715 IPR004033 UbiE/COQ5 methyltransferase BER93_02715 IPR023576 UbiE/COQ5 methyltransferase, conserved site BER93_02715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_02720 IPR000160 GGDEF domain BER93_02720 IPR029787 Nucleotide cyclase BER93_02725 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal BER93_02725 IPR015211 Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal BER93_02725 IPR016024 Armadillo-type fold BER93_02725 IPR027268 BER93_02725 BER93_02725 IPR038502 BER93_02725 BER93_02735 IPR006439 HAD hydrolase, subfamily IA BER93_02735 IPR023214 HAD-like domain BER93_02735 IPR036412 BER93_02735 BER93_02740 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_02740 IPR011611 Carbohydrate kinase PfkB BER93_02740 IPR029056 Ribokinase-like BER93_02745 IPR004000 Actin-related protein BER93_02745 IPR004753 Cell shape determining protein MreB/Mrl BER93_02750 IPR007221 Rod shape-determining protein MreC BER93_02755 IPR007227 Cell shape-determining protein MreD BER93_02755 IPR026034 Cell shape-determining protein MreD, proteobacterial type BER93_02760 IPR001460 Penicillin-binding protein, transpeptidase BER93_02760 IPR005311 Penicillin-binding protein, dimerisation domain BER93_02760 IPR012338 Beta-lactamase/transpeptidase-like BER93_02760 IPR017790 Penicillin-binding protein 2 BER93_02760 IPR036138 BER93_02760 BER93_02765 IPR001182 Cell cycle protein FtsW/RodA BER93_02765 IPR011923 Rod shape-determining protein RodA BER93_02765 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site BER93_02770 IPR000743 Glycoside hydrolase, family 28 BER93_02770 IPR006626 Parallel beta-helix repeat BER93_02770 IPR011050 Pectin lyase fold/virulence factor BER93_02770 IPR012334 Pectin lyase fold BER93_02775 IPR011757 Lytic transglycosylase MltB BER93_02775 IPR023346 Lysozyme-like domain BER93_02775 IPR031304 BER93_02775 BER93_02780 IPR007730 Sporulation-related domain BER93_02780 IPR009009 RlpA-like double-psi beta-barrel domain BER93_02780 IPR012997 Rare lipoprotein A, bacterial BER93_02780 IPR034718 BER93_02780 BER93_02780 IPR036680 BER93_02780 BER93_02780 IPR036908 BER93_02780 BER93_02785 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal BER93_02785 IPR012338 Beta-lactamase/transpeptidase-like BER93_02785 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal BER93_02785 IPR015956 Penicillin-binding protein-associated BER93_02785 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A BER93_02785 IPR037167 BER93_02785 BER93_02790 IPR018707 Protein of unknown function DUF2219 BER93_02790 IPR037107 BER93_02790 BER93_02795 IPR007454 Uncharacterised protein family UPF0250 BER93_02795 IPR027471 YbeD-like domain BER93_02800 IPR000544 Octanoyltransferase BER93_02800 IPR004143 Biotin/lipoate A/B protein ligase BER93_02800 IPR020605 Octanoyltransferase, conserved site BER93_02805 IPR003698 Lipoyl synthase BER93_02805 IPR006638 Elongator protein 3/MiaB/NifB BER93_02805 IPR007197 Radical SAM BER93_02805 IPR013785 Aldolase-type TIM barrel BER93_02805 IPR031691 BER93_02805 BER93_02830 IPR001478 PDZ domain BER93_02830 IPR004447 C-terminal-processing peptidase S41A BER93_02830 IPR005151 Tail specific protease BER93_02830 IPR020992 Tail specific protease, C-terminal BER93_02830 IPR029045 ClpP/crotonase-like domain BER93_02830 IPR036034 BER93_02830 BER93_02840 IPR007229 Nicotinate phosphoribosyltransferase family BER93_02840 IPR013785 Aldolase-type TIM barrel BER93_02840 IPR016471 Nicotinamide phosphoribosyl transferase BER93_02840 IPR036068 BER93_02840 BER93_02860 IPR018718 Protein of unknown function DUF2242 BER93_02865 IPR008816 Glycine zipper 2TM domain BER93_02875 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site BER93_02875 IPR004849 6-phosphogluconate dehydrogenase-related protein BER93_02875 IPR006114 6-phosphogluconate dehydrogenase, C-terminal BER93_02875 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding BER93_02875 IPR006183 BER93_02875 BER93_02875 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_02875 IPR013328 Dehydrogenase, multihelical BER93_02875 IPR036291 BER93_02875 BER93_02880 IPR000683 Oxidoreductase, N-terminal BER93_02880 IPR004104 Oxidoreductase, C-terminal BER93_02880 IPR036291 BER93_02880 BER93_02885 IPR007055 BON domain BER93_02885 IPR014004 Transport-associated and nodulation domain, bacteria BER93_02890 IPR000014 PAS domain BER93_02890 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_02890 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_02890 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_02890 IPR007891 CHASE3 BER93_02890 IPR035965 BER93_02890 BER93_02890 IPR036097 BER93_02890 BER93_02890 IPR036890 BER93_02890 BER93_02895 IPR001789 Signal transduction response regulator, receiver domain BER93_02895 IPR011006 CheY-like superfamily BER93_02900 IPR001789 Signal transduction response regulator, receiver domain BER93_02900 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_02900 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_02900 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_02900 IPR011006 CheY-like superfamily BER93_02900 IPR036097 BER93_02900 BER93_02900 IPR036890 BER93_02900 BER93_02905 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK BER93_02905 IPR035907 BER93_02905 BER93_02910 IPR002347 Glucose/ribitol dehydrogenase BER93_02910 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_02910 IPR036291 BER93_02910 BER93_02915 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA BER93_02915 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_02915 IPR038375 BER93_02915 BER93_02930 IPR022792 Type II secretion system, protein N BER93_02935 IPR001584 Integrase, catalytic core BER93_02935 IPR012337 Ribonuclease H-like domain BER93_02935 IPR025948 HTH-like domain BER93_02935 IPR036397 BER93_02935 BER93_02940 IPR002514 Transposase IS3/IS911family BER93_02940 IPR009057 Homeodomain-like BER93_02950 IPR002514 Transposase IS3/IS911family BER93_02950 IPR009057 Homeodomain-like BER93_02950 IPR036388 BER93_02950 BER93_02955 IPR000524 Transcription regulator HTH, GntR BER93_02955 IPR011663 UbiC transcription regulator-associated BER93_02955 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER93_02955 IPR036388 BER93_02955 BER93_02955 IPR036390 BER93_02955 BER93_02960 IPR005964 Bacterial glucose/galactose transporter BER93_02960 IPR011701 Major facilitator superfamily BER93_02960 IPR036259 BER93_02960 BER93_02965 IPR000843 Transcription regulator HTH, LacI BER93_02965 IPR010982 Lambda repressor-like, DNA-binding domain BER93_02965 IPR028082 Periplasmic binding protein-like I BER93_02970 IPR001347 Sugar isomerase (SIS) BER93_02975 IPR003764 N-acetylglucosamine-6-phosphate deacetylase BER93_02975 IPR006680 Amidohydrolase 1 BER93_02975 IPR011059 Metal-dependent hydrolase, composite domain BER93_02975 IPR032466 BER93_02975 BER93_02985 IPR003735 Metal-sensitive transcriptional repressor BER93_02985 IPR038390 BER93_02985 BER93_02990 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_02990 IPR011032 GroES (chaperonin 10)-like BER93_02990 IPR013149 Alcohol dehydrogenase, C-terminal BER93_02990 IPR013154 Alcohol dehydrogenase GroES-like BER93_02990 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase BER93_02990 IPR020843 Polyketide synthase, enoylreductase BER93_02990 IPR036291 BER93_02990 BER93_03000 IPR000801 Putative esterase BER93_03000 IPR014186 S-formylglutathione hydrolase BER93_03000 IPR029058 Alpha/Beta hydrolase fold BER93_03015 IPR002594 Glycoside hydrolase, family 12 BER93_03015 IPR013319 Glycoside hydrolase, family 11/12 BER93_03015 IPR013320 Concanavalin A-like lectin/glucanase, subgroup BER93_03025 IPR011059 Metal-dependent hydrolase, composite domain BER93_03030 IPR010323 Protein of unknown function DUF924 BER93_03030 IPR011990 Tetratricopeptide-like helical domain BER93_03035 IPR008490 Transposase InsH, N-terminal BER93_03045 IPR002559 Transposase, IS4-like BER93_03045 IPR025161 Putative transposase IS4/IS5 family BER93_03065 IPR008490 Transposase InsH, N-terminal BER93_03070 IPR002514 Transposase IS3/IS911family BER93_03070 IPR009057 Homeodomain-like BER93_03080 IPR001763 Rhodanese-like domain BER93_03080 IPR002109 Glutaredoxin BER93_03080 IPR004480 Monothiol glutaredoxin-related BER93_03080 IPR035903 BER93_03080 BER93_03080 IPR036249 BER93_03080 BER93_03080 IPR036873 BER93_03080 BER93_03085 IPR002509 Polysaccharide deacetylase BER93_03085 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel BER93_03090 IPR013217 Methyltransferase type 12 BER93_03090 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_03100 IPR004839 Aminotransferase, class I/classII BER93_03100 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_03100 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_03100 IPR015424 Pyridoxal phosphate-dependent transferase BER93_03105 IPR003439 ABC transporter-like BER93_03105 IPR003593 AAA+ ATPase domain BER93_03105 IPR005074 Peptidase C39, bacteriocin processing BER93_03105 IPR010132 ATPase, type I secretion system, HlyB BER93_03105 IPR011527 ABC transporter type 1, transmembrane domain BER93_03105 IPR017871 ABC transporter, conserved site BER93_03105 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03105 IPR036640 BER93_03105 BER93_03110 IPR003997 RTX secretion protein D, Gram-negative bacteria BER93_03110 IPR006144 Secretion protein HlyD, conserved site BER93_03110 IPR010129 Type I secretion membrane fusion protein, HlyD BER93_03110 IPR039562 BER93_03110 BER93_03115 IPR002559 Transposase, IS4-like BER93_03115 IPR025161 Putative transposase IS4/IS5 family BER93_03120 IPR001343 Haemolysin-type calcium-binding repeat BER93_03120 IPR003995 RTX toxin determinant A BER93_03120 IPR010566 Haemolysin-type calcium binding-related BER93_03120 IPR011049 Serralysin-like metalloprotease, C-terminal BER93_03120 IPR018511 Hemolysin-type calcium-binding conserved site BER93_03125 IPR002559 Transposase, IS4-like BER93_03125 IPR025161 Putative transposase IS4/IS5 family BER93_03130 IPR004881 Ribosome biogenesis GTPase RsgA, putative BER93_03130 IPR010914 EngC GTPase BER93_03130 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03135 IPR012548 Protein of unknown function DUF1704 BER93_03135 IPR012656 Conserved hypothetical protein CHP02421, QEGLA BER93_03140 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_03140 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_03140 IPR017853 Glycoside hydrolase, superfamily BER93_03145 IPR000531 TonB-dependent receptor, beta-barrel BER93_03145 IPR012910 TonB-dependent receptor, plug BER93_03145 IPR036942 BER93_03145 BER93_03145 IPR037066 BER93_03145 BER93_03150 IPR011701 Major facilitator superfamily BER93_03150 IPR036259 BER93_03150 BER93_03155 IPR000843 Transcription regulator HTH, LacI BER93_03155 IPR010982 Lambda repressor-like, DNA-binding domain BER93_03155 IPR028082 Periplasmic binding protein-like I BER93_03160 IPR002347 Glucose/ribitol dehydrogenase BER93_03160 IPR011283 Acetoacetyl-CoA reductase BER93_03160 IPR036291 BER93_03160 BER93_03165 IPR004680 Citrate transporter-like domain BER93_03165 IPR014738 Citrate transporter BER93_03170 IPR010870 Phosphate-selective porin O/P BER93_03170 IPR023614 Porin domain BER93_03175 IPR001789 Signal transduction response regulator, receiver domain BER93_03175 IPR001867 Signal transduction response regulator, C-terminal BER93_03175 IPR011006 CheY-like superfamily BER93_03175 IPR036388 BER93_03175 BER93_03180 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_03180 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_03180 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_03180 IPR013727 Two-component sensor kinase N-terminal BER93_03180 IPR036097 BER93_03180 BER93_03180 IPR036890 BER93_03180 BER93_03190 IPR000792 Transcription regulator LuxR, C-terminal BER93_03190 IPR001789 Signal transduction response regulator, receiver domain BER93_03190 IPR011006 CheY-like superfamily BER93_03190 IPR016032 Signal transduction response regulator, C-terminal effector BER93_03195 IPR010846 Protein of unknown function DUF1460 BER93_03195 IPR038765 BER93_03195 BER93_03200 IPR002514 Transposase IS3/IS911family BER93_03200 IPR009057 Homeodomain-like BER93_03215 IPR002514 Transposase IS3/IS911family BER93_03215 IPR009057 Homeodomain-like BER93_03225 IPR001789 Signal transduction response regulator, receiver domain BER93_03225 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_03225 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_03225 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_03225 IPR011006 CheY-like superfamily BER93_03225 IPR029151 Periplasmic sensor domain-like BER93_03225 IPR033479 BER93_03225 BER93_03225 IPR035965 BER93_03225 BER93_03225 IPR036097 BER93_03225 BER93_03225 IPR036890 BER93_03225 BER93_03230 IPR010870 Phosphate-selective porin O/P BER93_03230 IPR023614 Porin domain BER93_03235 IPR001991 Sodium:dicarboxylate symporter BER93_03235 IPR018107 Sodium:dicarboxylate symporter, conserved site BER93_03235 IPR023954 C4-dicarboxylate transport protein BER93_03235 IPR036458 BER93_03235 BER93_03240 IPR002505 Phosphate acetyl/butaryl transferase BER93_03240 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase BER93_03240 IPR012301 Malic enzyme, N-terminal domain BER93_03240 IPR012302 Malic enzyme, NAD-binding BER93_03240 IPR036291 BER93_03240 BER93_03240 IPR037062 BER93_03240 BER93_03250 IPR019401 Zinc finger, CHCC-type BER93_03255 IPR001296 Glycosyl transferase, family 1 BER93_03255 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain BER93_03260 IPR007016 O-antigen ligase-related BER93_03265 IPR004960 Bacterial lipid A biosynthesis acyltransferase BER93_03265 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase BER93_03270 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal BER93_03270 IPR038107 BER93_03270 BER93_03275 IPR003423 Outer membrane efflux protein BER93_03275 IPR010130 Type I secretion outer membrane protein, TolC BER93_03280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_03285 IPR001647 DNA-binding HTH domain, TetR-type BER93_03285 IPR009057 Homeodomain-like BER93_03285 IPR036271 BER93_03285 BER93_03285 IPR039536 BER93_03285 BER93_03290 IPR000847 Transcription regulator HTH, LysR BER93_03290 IPR036388 BER93_03290 BER93_03290 IPR036390 BER93_03290 BER93_03295 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha BER93_03295 IPR004430 3-isopropylmalate dehydratase, large subunit BER93_03295 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_03295 IPR018136 Aconitase family, 4Fe-4S cluster binding site BER93_03295 IPR036008 BER93_03295 BER93_03300 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel BER93_03300 IPR004431 3-isopropylmalate dehydratase, small subunit BER93_03300 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_03305 IPR004429 Isopropylmalate dehydrogenase BER93_03305 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site BER93_03305 IPR024084 Isopropylmalate dehydrogenase-like domain BER93_03310 IPR000531 TonB-dependent receptor, beta-barrel BER93_03310 IPR012910 TonB-dependent receptor, plug BER93_03310 IPR037066 BER93_03310 BER93_03315 IPR002559 Transposase, IS4-like BER93_03315 IPR008490 Transposase InsH, N-terminal BER93_03320 IPR000891 Pyruvate carboxyltransferase BER93_03320 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site BER93_03320 IPR005671 2-isopropylmalate synthase, bacterial-type BER93_03320 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain BER93_03320 IPR013785 Aldolase-type TIM barrel BER93_03320 IPR036230 BER93_03320 BER93_03325 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_03325 IPR036052 BER93_03325 BER93_03335 IPR000399 TPP-binding enzyme, conserved site BER93_03335 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding BER93_03335 IPR012000 Thiamine pyrophosphate enzyme, central domain BER93_03335 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain BER93_03335 IPR012846 Acetolactate synthase, large subunit, biosynthetic BER93_03335 IPR029035 DHS-like NAD/FAD-binding domain BER93_03335 IPR029061 Thiamin diphosphate-binding fold BER93_03340 IPR000506 Acetohydroxy acid isomeroreductase C-terminal BER93_03340 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_03340 IPR013023 Acetohydroxy acid isomeroreductase BER93_03340 IPR013116 Acetohydroxy acid isomeroreductase, catalytic BER93_03340 IPR014359 Ketol-acid reductoisomerase, gammaproteobacteria BER93_03340 IPR036291 BER93_03340 BER93_03360 IPR002817 Thiamine biosynthesis protein ThiC BER93_03360 IPR025747 ThiC-associated domain BER93_03360 IPR037509 BER93_03360 BER93_03360 IPR038521 BER93_03360 BER93_03365 IPR001867 Signal transduction response regulator, C-terminal BER93_03365 IPR016032 Signal transduction response regulator, C-terminal effector BER93_03365 IPR036388 BER93_03365 BER93_03370 IPR002559 Transposase, IS4-like BER93_03370 IPR008490 Transposase InsH, N-terminal BER93_03375 IPR009057 Homeodomain-like BER93_03375 IPR018060 DNA binding HTH domain, AraC-type BER93_03380 IPR000531 TonB-dependent receptor, beta-barrel BER93_03380 IPR012910 TonB-dependent receptor, plug BER93_03380 IPR037066 BER93_03380 BER93_03385 IPR011006 CheY-like superfamily BER93_03385 IPR013976 Metal-dependent hydrolase HDOD BER93_03385 IPR014626 Signal transduction response regulator, modified HD-GYP domain-containing, putative BER93_03390 IPR008162 Inorganic pyrophosphatase BER93_03390 IPR036649 BER93_03390 BER93_03420 IPR000023 Phosphofructokinase domain BER93_03420 IPR011404 Phosphofructokinase, XF0274 BER93_03420 IPR022953 Phosphofructokinase BER93_03420 IPR035966 BER93_03420 BER93_03425 IPR000850 Adenylate kinase/UMP-CMP kinase BER93_03425 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03425 IPR033690 BER93_03425 BER93_03430 IPR000713 Mur ligase, N-terminal BER93_03430 IPR004101 Mur ligase, C-terminal BER93_03430 IPR005757 Murein peptide ligase BER93_03430 IPR013221 Mur ligase, central BER93_03430 IPR036565 BER93_03430 BER93_03430 IPR036615 BER93_03430 BER93_03435 IPR003111 Peptidase S16, lon N-terminal BER93_03435 IPR015947 PUA-like domain BER93_03445 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_03445 IPR025902 LssY-like C-terminal domain BER93_03445 IPR032816 BER93_03445 BER93_03445 IPR036938 BER93_03445 BER93_03450 IPR011009 Protein kinase-like domain BER93_03455 IPR002347 Glucose/ribitol dehydrogenase BER93_03455 IPR036291 BER93_03455 BER93_03460 IPR024291 Protein of unknown function DUF3829 BER93_03465 IPR002559 Transposase, IS4-like BER93_03465 IPR008490 Transposase InsH, N-terminal BER93_03475 IPR004636 Acetylornithine/Succinylornithine transaminase family BER93_03475 IPR005814 Aminotransferase class-III BER93_03475 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_03475 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_03475 IPR015424 Pyridoxal phosphate-dependent transferase BER93_03480 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase BER93_03480 IPR005814 Aminotransferase class-III BER93_03480 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_03480 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_03480 IPR015424 Pyridoxal phosphate-dependent transferase BER93_03485 IPR013785 Aldolase-type TIM barrel BER93_03485 IPR022998 Thiamin phosphate synthase superfamily BER93_03485 IPR034291 BER93_03485 BER93_03485 IPR036206 BER93_03485 BER93_03490 IPR018527 Rubredoxin, iron-binding site BER93_03490 IPR024922 Rubredoxin BER93_03490 IPR024935 Rubredoxin domain BER93_03495 IPR011990 Tetratricopeptide-like helical domain BER93_03495 IPR032698 BER93_03495 BER93_03500 IPR003795 Protein of unknown function DUF192 BER93_03500 IPR038695 BER93_03500 BER93_03505 IPR004788 Ribose 5-phosphate isomerase, type A BER93_03505 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup BER93_03505 IPR037171 BER93_03505 BER93_03510 IPR002740 EVE domain BER93_03510 IPR015947 PUA-like domain BER93_03515 IPR002698 5-formyltetrahydrofolate cyclo-ligase BER93_03515 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain BER93_03515 IPR037171 BER93_03515 BER93_03525 IPR007838 Cell division protein ZapA-like BER93_03525 IPR036192 BER93_03525 BER93_03530 IPR012662 Conserved hypothetical protein CHP02449 BER93_03535 IPR011978 Uncharacterised protein family UPF0149 BER93_03535 IPR036255 BER93_03535 BER93_03540 IPR000994 Peptidase M24, structural domain BER93_03540 IPR007865 Aminopeptidase P, N-terminal BER93_03540 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER93_03540 IPR036005 BER93_03540 BER93_03545 IPR000994 Peptidase M24, structural domain BER93_03545 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BER93_03545 IPR022846 Xaa-Pro dipeptidase BER93_03545 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER93_03545 IPR036005 BER93_03545 BER93_03560 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related BER93_03560 IPR006638 Elongator protein 3/MiaB/NifB BER93_03560 IPR007197 Radical SAM BER93_03560 IPR010723 HemN, C-terminal domain BER93_03560 IPR023404 Radical SAM, alpha/beta horseshoe BER93_03565 IPR002637 Ham1-like protein BER93_03565 IPR020922 Non-canonical purine NTP pyrophosphatase BER93_03565 IPR029001 Inosine triphosphate pyrophosphatase-like BER93_03570 IPR001247 Exoribonuclease, phosphorolytic domain 1 BER93_03570 IPR002381 Ribonuclease phosphorolytic, bacterial-type BER93_03570 IPR015847 Exoribonuclease, phosphorolytic domain 2 BER93_03570 IPR018336 Ribonuclease PH, conserved site BER93_03570 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_03570 IPR027408 PNPase/RNase PH domain BER93_03570 IPR036345 BER93_03570 BER93_03575 IPR005229 Conserved hypothetical protein CHP00255 BER93_03575 IPR013527 YicC-like, N-terminal BER93_03575 IPR013551 Domain of unknown function DUF1732 BER93_03580 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BER93_03580 IPR017665 Guanylate kinase BER93_03580 IPR020590 Guanylate kinase, conserved site BER93_03580 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03585 IPR003716 DNA-directed RNA polymerase, omega subunit BER93_03585 IPR006110 RNA polymerase, subunit omega/K/RPB6 BER93_03585 IPR012293 RNA polymerase subunit, RPB6/omega BER93_03585 IPR036161 BER93_03585 BER93_03590 IPR002912 ACT domain BER93_03590 IPR003607 HD/PDEase domain BER93_03590 IPR004095 TGS BER93_03590 IPR004811 RelA/SpoT family BER93_03590 IPR007685 RelA/SpoT BER93_03590 IPR012675 Beta-grasp domain BER93_03590 IPR012676 TGS-like BER93_03595 IPR006056 Enamine/imine deaminase YjgF-like BER93_03595 IPR006175 YjgF/Yer057p/UK114 family BER93_03595 IPR035959 BER93_03595 BER93_03600 IPR001650 Helicase, C-terminal BER93_03600 IPR004609 ATP-dependent DNA helicase RecG BER93_03600 IPR011545 DEAD/DEAH box helicase domain BER93_03600 IPR012340 Nucleic acid-binding, OB-fold BER93_03600 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_03600 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03600 IPR033454 BER93_03600 BER93_03605 IPR002559 Transposase, IS4-like BER93_03610 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER93_03610 IPR036452 BER93_03610 BER93_03615 IPR002150 Ribosomal protein L31 BER93_03615 IPR027493 Ribosomal protein L31 type B BER93_03615 IPR034704 BER93_03615 BER93_03620 IPR002020 Citrate synthase-like BER93_03620 IPR010953 Citrate synthase, type I BER93_03620 IPR016142 Citrate synthase-like, large alpha subdomain BER93_03620 IPR016143 Citrate synthase-like, small alpha subdomain BER93_03620 IPR019810 Citrate synthase active site BER93_03620 IPR024176 Citrate synthase, bacterial-type BER93_03620 IPR036969 BER93_03620 BER93_03630 IPR001264 Glycosyl transferase, family 51 BER93_03630 IPR001460 Penicillin-binding protein, transpeptidase BER93_03630 IPR012338 Beta-lactamase/transpeptidase-like BER93_03630 IPR023346 Lysozyme-like domain BER93_03630 IPR031376 BER93_03630 BER93_03630 IPR036950 BER93_03630 BER93_03635 IPR005883 Type IV pilus assembly protein PilM BER93_03640 IPR007813 Fimbrial assembly PilN BER93_03645 IPR007445 Pilus assembly protein, PilO BER93_03645 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BER93_03650 IPR007446 Pilus assembly protein PilP BER93_03655 IPR001775 GspD/PilQ family BER93_03655 IPR004845 Type II secretion system GspD, conserved site BER93_03655 IPR004846 Type II/III secretion system BER93_03655 IPR005644 NolW-like BER93_03655 IPR011662 Secretin/TonB, short N-terminal BER93_03655 IPR013355 Type IV pilus secretin PilQ BER93_03655 IPR038591 BER93_03655 BER93_03660 IPR002559 Transposase, IS4-like BER93_03660 IPR008490 Transposase InsH, N-terminal BER93_03665 IPR002559 Transposase, IS4-like BER93_03665 IPR025161 Putative transposase IS4/IS5 family BER93_03670 IPR002559 Transposase, IS4-like BER93_03670 IPR025161 Putative transposase IS4/IS5 family BER93_03690 IPR002559 Transposase, IS4-like BER93_03695 IPR003509 Uncharacterised protein family UPF0102 BER93_03695 IPR011335 Restriction endonuclease type II-like BER93_03695 IPR011856 tRNA endonuclease-like domain BER93_03700 IPR007443 Penicillin-binding protein activator LpoA BER93_03700 IPR028082 Periplasmic binding protein-like I BER93_03705 IPR000878 Tetrapyrrole methylase BER93_03705 IPR008189 rRNA small subunit methyltransferase I BER93_03705 IPR014776 Tetrapyrrole methylase, subdomain 2 BER93_03705 IPR014777 Tetrapyrrole methylase, subdomain 1 BER93_03705 IPR018063 SAM-dependent methyltransferase RsmI, conserved site BER93_03705 IPR035996 BER93_03705 BER93_03720 IPR002712 Toxin CcdB BER93_03720 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor BER93_03725 IPR009956 Post-segregation antitoxin CcdA BER93_03730 IPR008551 Protein of unknown function DUF833 BER93_03735 IPR003444 MraZ BER93_03735 IPR020603 MraZ domain BER93_03735 IPR037914 BER93_03735 BER93_03735 IPR038619 BER93_03735 BER93_03740 IPR002903 Ribosomal RNA small subunit methyltransferase H BER93_03740 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain BER93_03740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_03745 IPR011922 Cell division protein FtsL BER93_03750 IPR001460 Penicillin-binding protein, transpeptidase BER93_03750 IPR005311 Penicillin-binding protein, dimerisation domain BER93_03750 IPR012338 Beta-lactamase/transpeptidase-like BER93_03750 IPR036138 BER93_03750 BER93_03750 IPR037532 BER93_03750 BER93_03755 IPR000713 Mur ligase, N-terminal BER93_03755 IPR004101 Mur ligase, C-terminal BER93_03755 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase BER93_03755 IPR013221 Mur ligase, central BER93_03755 IPR035911 BER93_03755 BER93_03755 IPR036565 BER93_03755 BER93_03755 IPR036615 BER93_03755 BER93_03760 IPR000713 Mur ligase, N-terminal BER93_03760 IPR004101 Mur ligase, C-terminal BER93_03760 IPR005863 UDP-MurNAc-pentapeptide synthetase BER93_03760 IPR013221 Mur ligase, central BER93_03760 IPR035911 BER93_03760 BER93_03760 IPR036565 BER93_03760 BER93_03760 IPR036615 BER93_03760 BER93_03765 IPR000715 Glycosyl transferase, family 4 BER93_03765 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase BER93_03765 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site BER93_03770 IPR001182 Cell cycle protein FtsW/RodA BER93_03770 IPR013437 Cell division protein FtsW BER93_03775 IPR004276 Glycosyl transferase, family 28 BER93_03775 IPR006009 N-acetylglucosaminyltransferase, MurG BER93_03775 IPR007235 Glycosyl transferase, family 28, C-terminal BER93_03780 IPR000713 Mur ligase, N-terminal BER93_03780 IPR004101 Mur ligase, C-terminal BER93_03780 IPR005758 UDP-N-acetylmuramate-alanine ligase BER93_03780 IPR013221 Mur ligase, central BER93_03780 IPR036565 BER93_03780 BER93_03780 IPR036615 BER93_03780 BER93_03785 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site BER93_03785 IPR005905 D-alanine--D-alanine ligase BER93_03785 IPR011095 D-alanine--D-alanine ligase, C-terminal BER93_03785 IPR011127 D-alanine--D-alanine ligase, N-terminal domain BER93_03785 IPR013815 ATP-grasp fold, subdomain 1 BER93_03785 IPR016185 Pre-ATP-grasp domain BER93_03790 IPR005548 Cell division protein FtsQ/DivIB BER93_03790 IPR013685 Polypeptide-transport-associated, FtsQ-type BER93_03790 IPR026579 Cell division protein FtsQ BER93_03795 IPR003494 SHS2 domain inserted in FtsA BER93_03795 IPR020823 Cell division protein FtsA BER93_03800 IPR000158 Cell division protein FtsZ BER93_03800 IPR003008 Tubulin/FtsZ, GTPase domain BER93_03800 IPR008280 Tubulin/FtsZ, C-terminal BER93_03800 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain BER93_03800 IPR020805 Cell division protein FtsZ, conserved site BER93_03800 IPR024757 Cell division protein FtsZ, C-terminal BER93_03800 IPR036525 BER93_03800 BER93_03800 IPR037103 BER93_03800 BER93_03805 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase BER93_03805 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal BER93_03805 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal BER93_03805 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_03810 IPR007922 Protein of unknown function DUF721/UPF0232 BER93_03815 IPR011055 Duplicated hybrid motif BER93_03815 IPR016047 Peptidase M23 BER93_03820 IPR000185 Protein translocase subunit SecA BER93_03820 IPR004027 SEC-C motif BER93_03820 IPR011115 SecA DEAD-like, N-terminal BER93_03820 IPR011116 SecA Wing/Scaffold BER93_03820 IPR011130 SecA preprotein, cross-linking domain BER93_03820 IPR020937 SecA conserved site BER93_03820 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03820 IPR036266 BER93_03820 BER93_03820 IPR036670 BER93_03820 BER93_03830 IPR000086 NUDIX hydrolase domain BER93_03830 IPR003561 Mutator MutT BER93_03830 IPR013785 Aldolase-type TIM barrel BER93_03830 IPR015797 NUDIX hydrolase domain-like BER93_03830 IPR020084 NUDIX hydrolase, conserved site BER93_03830 IPR020476 NUDIX hydrolase BER93_03830 IPR022998 Thiamin phosphate synthase superfamily BER93_03830 IPR036206 BER93_03830 BER93_03840 IPR003171 Methylenetetrahydrofolate reductase BER93_03840 IPR004620 5,10-methylenetetrahydrofolate reductase BER93_03840 IPR029041 FAD-linked oxidoreductase-like BER93_03850 IPR011032 GroES (chaperonin 10)-like BER93_03850 IPR013154 Alcohol dehydrogenase GroES-like BER93_03850 IPR014189 Quinone oxidoreductase PIG3 BER93_03850 IPR020843 Polyketide synthase, enoylreductase BER93_03850 IPR036291 BER93_03850 BER93_03860 IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 BER93_03860 IPR038765 BER93_03860 BER93_03865 IPR002559 Transposase, IS4-like BER93_03865 IPR025161 Putative transposase IS4/IS5 family BER93_03870 IPR002559 Transposase, IS4-like BER93_03870 IPR008490 Transposase InsH, N-terminal BER93_03875 IPR002514 Transposase IS3/IS911family BER93_03875 IPR009057 Homeodomain-like BER93_03885 IPR001977 Dephospho-CoA kinase BER93_03885 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03890 IPR000045 Prepilin type IV endopeptidase, peptidase domain BER93_03890 IPR010627 Peptidase A24A, N-terminal BER93_03890 IPR014032 Peptidase A24A, prepilin type IV, bacterial BER93_03895 IPR001992 Type II secretion system conserved site BER93_03895 IPR003004 GspF/PilC family BER93_03895 IPR018076 Type II secretion system F domain BER93_03900 IPR001082 Fimbrial protein pilin BER93_03900 IPR012902 Prokaryotic N-terminal methylation site BER93_03905 IPR001482 Type II secretion system protein E BER93_03905 IPR007831 General secretory system II, protein E, N-terminal BER93_03905 IPR013374 ATPase, type IV, pilus assembly, PilB BER93_03905 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03905 IPR037257 BER93_03905 BER93_03920 IPR003812 Fido domain BER93_03920 IPR036597 BER93_03920 BER93_03925 IPR001789 Signal transduction response regulator, receiver domain BER93_03925 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_03925 IPR002197 DNA binding HTH domain, Fis-type BER93_03925 IPR003593 AAA+ ATPase domain BER93_03925 IPR009057 Homeodomain-like BER93_03925 IPR011006 CheY-like superfamily BER93_03925 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_03925 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_03925 IPR025944 Sigma-54 interaction domain, conserved site BER93_03925 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_03930 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_03930 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_03930 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_03930 IPR036097 BER93_03930 BER93_03930 IPR036890 BER93_03930 BER93_03935 IPR005809 Succinyl-CoA synthetase, beta subunit BER93_03935 IPR005811 ATP-citrate lyase/succinyl-CoA ligase BER93_03935 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type BER93_03935 IPR013815 ATP-grasp fold, subdomain 1 BER93_03935 IPR016102 Succinyl-CoA synthetase-like BER93_03935 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site BER93_03940 IPR003781 CoA-binding BER93_03940 IPR005810 Succinyl-CoA ligase, alpha subunit BER93_03940 IPR005811 ATP-citrate lyase/succinyl-CoA ligase BER93_03940 IPR016102 Succinyl-CoA synthetase-like BER93_03940 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site BER93_03940 IPR033847 BER93_03940 BER93_03940 IPR036291 BER93_03940 BER93_03945 IPR003010 Carbon-nitrogen hydrolase BER93_03945 IPR003694 NAD(+) synthetase BER93_03945 IPR014445 Glutamine-dependent NAD(+) synthetase BER93_03945 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_03945 IPR022310 NAD/GMP synthase BER93_03945 IPR036526 BER93_03945 BER93_03950 IPR011990 Tetratricopeptide-like helical domain BER93_03950 IPR017689 Outer membrane protein assembly factor BamD BER93_03950 IPR039565 BER93_03950 BER93_03955 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_03955 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site BER93_03955 IPR006225 Pseudouridine synthase, RluC/RluD BER93_03955 IPR020103 Pseudouridine synthase, catalytic domain BER93_03955 IPR036986 BER93_03955 BER93_03960 IPR003730 Multi-copper polyphenol oxidoreductase, laccase BER93_03960 IPR011324 Cytotoxic necrotizing factor-like, catalytic BER93_03960 IPR038371 BER93_03960 BER93_03985 IPR001830 Glycosyl transferase, family 20 BER93_03985 IPR012766 Alpha,alpha-trehalose-phosphate synthase BER93_03990 IPR008928 Six-hairpin glycosidase-like BER93_03990 IPR011613 Glycoside hydrolase family 15 BER93_03990 IPR012341 Six-hairpin glycosidase BER93_03995 IPR003337 Trehalose-phosphatase BER93_03995 IPR006379 HAD-superfamily hydrolase, subfamily IIB BER93_03995 IPR023214 HAD-like domain BER93_03995 IPR036412 BER93_03995 BER93_04000 IPR000531 TonB-dependent receptor, beta-barrel BER93_04000 IPR010916 TonB box, conserved site BER93_04000 IPR012910 TonB-dependent receptor, plug BER93_04000 IPR036942 BER93_04000 BER93_04000 IPR037066 BER93_04000 BER93_04005 IPR021957 Protein of unknown function DUF3574 BER93_04010 IPR027839 Protein of unknown function DUF4432 BER93_04025 IPR004046 Glutathione S-transferase, C-terminal BER93_04025 IPR036249 BER93_04025 BER93_04025 IPR036282 BER93_04025 BER93_04030 IPR000305 GIY-YIG nuclease superfamily BER93_04030 IPR035901 BER93_04030 BER93_04040 IPR002514 Transposase IS3/IS911family BER93_04040 IPR009057 Homeodomain-like BER93_04055 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_04055 IPR018317 Queuosine biosynthesis protein QueC BER93_04070 IPR002942 RNA-binding S4 domain BER93_04070 IPR020103 Pseudouridine synthase, catalytic domain BER93_04070 IPR036986 BER93_04070 BER93_04075 IPR001789 Signal transduction response regulator, receiver domain BER93_04075 IPR011006 CheY-like superfamily BER93_04085 IPR001650 Helicase, C-terminal BER93_04085 IPR002121 HRDC domain BER93_04085 IPR004589 DNA helicase, ATP-dependent, RecQ type BER93_04085 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial BER93_04085 IPR010997 HRDC-like BER93_04085 IPR011545 DEAD/DEAH box helicase domain BER93_04085 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_04085 IPR018982 RQC domain BER93_04085 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04085 IPR032284 BER93_04085 BER93_04085 IPR036388 BER93_04085 BER93_04090 IPR002177 DNA-binding protein Dps BER93_04090 IPR008331 Ferritin/DPS protein domain BER93_04090 IPR009078 Ferritin-like superfamily BER93_04090 IPR012347 Ferritin-related BER93_04090 IPR023188 DNA-binding protein Dps, conserved site BER93_04095 IPR001650 Helicase, C-terminal BER93_04095 IPR003593 AAA+ ATPase domain BER93_04095 IPR007502 Helicase-associated domain BER93_04095 IPR010222 RNA helicase, ATP-dependent DEAH box, HrpA-type BER93_04095 IPR011545 DEAD/DEAH box helicase domain BER93_04095 IPR011709 Domain of unknown function DUF1605 BER93_04095 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_04095 IPR024590 RNA helicase, ATP-dependent DEAH box, HrpA, C-terminal BER93_04095 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04100 IPR007197 Radical SAM BER93_04100 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria BER93_04100 IPR013785 Aldolase-type TIM barrel BER93_04100 IPR017200 Radical SAM coenzyme PQQ biosynthesis protein E/heme D1 biosynthesis NirJ BER93_04100 IPR023885 4Fe4S-binding SPASM domain BER93_04105 IPR008792 Coenzyme PQQ synthesis D BER93_04105 IPR022479 Coenzyme PQQ synthesis D, bacteria BER93_04110 IPR004305 Thiaminase-2/PQQC BER93_04110 IPR011845 Coenzyme PQQ biosynthesis protein C BER93_04110 IPR016084 Haem oxygenase-like, multi-helical BER93_04115 IPR001279 Beta-lactamase-like BER93_04115 IPR011842 Coenzyme PQQ biosynthesis protein B BER93_04115 IPR036866 BER93_04115 BER93_04120 IPR002912 ACT domain BER93_04120 IPR003607 HD/PDEase domain BER93_04120 IPR004095 TGS BER93_04120 IPR004811 RelA/SpoT family BER93_04120 IPR007685 RelA/SpoT BER93_04120 IPR012675 Beta-grasp domain BER93_04120 IPR012676 TGS-like BER93_04125 IPR011990 Tetratricopeptide-like helical domain BER93_04130 IPR001173 Glycosyltransferase 2-like BER93_04130 IPR029044 Nucleotide-diphospho-sugar transferases BER93_04135 IPR001264 Glycosyl transferase, family 51 BER93_04135 IPR001460 Penicillin-binding protein, transpeptidase BER93_04135 IPR011813 Penicillin-binding protein 1B BER93_04135 IPR012338 Beta-lactamase/transpeptidase-like BER93_04135 IPR023346 Lysozyme-like domain BER93_04135 IPR028166 Bifunctional transglycosylase second domain BER93_04135 IPR036950 BER93_04135 BER93_04140 IPR011990 Tetratricopeptide-like helical domain BER93_04145 IPR006555 ATP-dependent helicase, C-terminal BER93_04145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04150 IPR000905 Gcp-like domain BER93_04150 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ BER93_04155 IPR006260 TonB, C-terminal BER93_04155 IPR037682 BER93_04155 BER93_04160 IPR004215 Prokaryotic glutathione synthetase, N-terminal BER93_04160 IPR004218 Prokaryotic glutathione synthetase, ATP-binding BER93_04160 IPR006284 Glutathione synthetase, prokaryotic BER93_04160 IPR013815 ATP-grasp fold, subdomain 1 BER93_04160 IPR016185 Pre-ATP-grasp domain BER93_04165 IPR001789 Signal transduction response regulator, receiver domain BER93_04165 IPR011006 CheY-like superfamily BER93_04170 IPR001789 Signal transduction response regulator, receiver domain BER93_04170 IPR011006 CheY-like superfamily BER93_04175 IPR002545 CheW-like protein BER93_04175 IPR036061 BER93_04175 BER93_04180 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_04180 IPR004090 Chemotaxis methyl-accepting receptor BER93_04185 IPR001789 Signal transduction response regulator, receiver domain BER93_04185 IPR002545 CheW-like protein BER93_04185 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_04185 IPR004105 Histidine kinase CheA-like, homodimeric domain BER93_04185 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_04185 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_04185 IPR011006 CheY-like superfamily BER93_04185 IPR036061 BER93_04185 BER93_04185 IPR036641 BER93_04185 BER93_04185 IPR036890 BER93_04185 BER93_04190 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_04190 IPR035909 BER93_04190 BER93_04200 IPR000182 GNAT domain BER93_04200 IPR016181 Acyl-CoA N-acyltransferase BER93_04215 IPR005627 Copper homeostasis protein CutC BER93_04215 IPR023648 Copper homeostasis CutC domain BER93_04215 IPR036822 BER93_04215 BER93_04220 IPR001611 Leucine-rich repeat BER93_04220 IPR003591 Leucine-rich repeat, typical subtype BER93_04220 IPR032675 BER93_04220 BER93_04235 IPR000421 Coagulation factor 5/8 C-terminal type domain BER93_04235 IPR000933 Glycoside hydrolase, family 29 BER93_04235 IPR008979 Galactose-binding domain-like BER93_04235 IPR016286 Alpha-L-fucosidase, metazoa-type BER93_04235 IPR017853 Glycoside hydrolase, superfamily BER93_04240 IPR012337 Ribonuclease H-like domain BER93_04240 IPR025246 Transposase IS30-like HTH domain BER93_04245 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_04245 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_04245 IPR037026 BER93_04245 BER93_04255 IPR018683 Domain of unknown function DUF2169 BER93_04260 IPR002559 Transposase, IS4-like BER93_04265 IPR018683 Domain of unknown function DUF2169 BER93_04270 IPR025425 Domain of unknown function DUF4150 BER93_04270 IPR032869 BER93_04270 BER93_04275 IPR018958 SMI1/KNR4 like domain BER93_04275 IPR037883 BER93_04275 BER93_04280 IPR002514 Transposase IS3/IS911family BER93_04280 IPR009057 Homeodomain-like BER93_04285 IPR001584 Integrase, catalytic core BER93_04285 IPR012337 Ribonuclease H-like domain BER93_04285 IPR036397 BER93_04285 BER93_04290 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_04290 IPR002300 Aminoacyl-tRNA synthetase, class Ia BER93_04290 IPR002303 Valine-tRNA ligase BER93_04290 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain BER93_04290 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding BER93_04290 IPR010978 tRNA-binding arm BER93_04290 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding BER93_04290 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_04290 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm BER93_04290 IPR037118 BER93_04290 BER93_04295 IPR007459 DNA polymerase III chi subunit, HolC BER93_04295 IPR036768 BER93_04295 BER93_04300 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal BER93_04300 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal BER93_04300 IPR011356 Leucine aminopeptidase/peptidase B BER93_04300 IPR023042 Peptidase M17, leucine aminopeptidase BER93_04305 IPR005495 Permease YjgP/YjgQ, predicted BER93_04305 IPR030922 BER93_04305 BER93_04310 IPR005495 Permease YjgP/YjgQ, predicted BER93_04310 IPR030923 BER93_04310 BER93_04320 IPR010432 RDD BER93_04325 IPR002104 Integrase, catalytic BER93_04325 IPR004107 Integrase, SAM-like, N-terminal BER93_04325 IPR010998 Integrase, Lambda-type, N-terminal BER93_04325 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_04325 IPR011932 Tyrosine recombinase XerD BER93_04325 IPR013762 Integrase-like, catalytic core BER93_04325 IPR023009 Tyrosine recombinase XerC/XerD BER93_04330 IPR009094 Disulphide bond isomerase, DsbC, N-terminal BER93_04330 IPR012336 Thioredoxin-like fold BER93_04330 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BER93_04330 IPR036249 BER93_04330 BER93_04335 IPR010073 Phosphoribosylformylglycinamidine synthase BER93_04335 IPR010918 AIR synthase-related protein, C-terminal domain BER93_04335 IPR029062 Class I glutamine amidotransferase-like BER93_04335 IPR036604 BER93_04335 BER93_04335 IPR036676 BER93_04335 BER93_04335 IPR036921 BER93_04335 BER93_04345 IPR005594 YadA-like, C-terminal BER93_04345 IPR008635 Coiled stalk of trimeric autotransporter adhesin BER93_04345 IPR008640 Head domain of trimeric autotransporter adhesin BER93_04345 IPR011049 Serralysin-like metalloprotease, C-terminal BER93_04350 IPR000209 Peptidase S8/S53 domain BER93_04350 IPR007280 Peptidase, C-terminal, archaeal/bacterial BER93_04350 IPR015500 Peptidase S8, subtilisin-related BER93_04350 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_04350 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_04350 IPR036852 BER93_04350 BER93_04355 IPR001482 Type II secretion system protein E BER93_04355 IPR003593 AAA+ ATPase domain BER93_04355 IPR007831 General secretory system II, protein E, N-terminal BER93_04355 IPR013369 Type II secretion system GspE BER93_04355 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04355 IPR037257 BER93_04355 BER93_04360 IPR001992 Type II secretion system conserved site BER93_04360 IPR003004 GspF/PilC family BER93_04360 IPR018076 Type II secretion system F domain BER93_04365 IPR000983 Bacterial general secretion pathway protein G-type pilin BER93_04365 IPR010054 General secretion pathway protein G BER93_04365 IPR012902 Prokaryotic N-terminal methylation site BER93_04365 IPR013545 Type II secretion system protein G BER93_04370 IPR002416 Type II secretion system protein H BER93_04370 IPR022346 General secretion pathway, GspH BER93_04375 IPR012902 Prokaryotic N-terminal methylation site BER93_04380 IPR012902 Prokaryotic N-terminal methylation site BER93_04385 IPR005628 General secretion pathway protein K BER93_04385 IPR038072 BER93_04385 BER93_04390 IPR007813 Fimbrial assembly PilN BER93_04395 IPR034756 BER93_04395 BER93_04405 IPR001775 GspD/PilQ family BER93_04405 IPR004845 Type II secretion system GspD, conserved site BER93_04405 IPR004846 Type II/III secretion system BER93_04405 IPR005644 NolW-like BER93_04405 IPR013356 Type II secretion system GspD BER93_04405 IPR038591 BER93_04405 BER93_04410 IPR001173 Glycosyltransferase 2-like BER93_04410 IPR029044 Nucleotide-diphospho-sugar transferases BER93_04415 IPR000524 Transcription regulator HTH, GntR BER93_04415 IPR011663 UbiC transcription regulator-associated BER93_04415 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER93_04415 IPR036388 BER93_04415 BER93_04415 IPR036390 BER93_04415 BER93_04420 IPR006419 Nicotinamide mononucleotide transporter PnuC BER93_04425 IPR000531 TonB-dependent receptor, beta-barrel BER93_04425 IPR010105 TonB-dependent siderophore receptor BER93_04425 IPR010917 TonB-dependent receptor, conserved site BER93_04425 IPR012910 TonB-dependent receptor, plug BER93_04425 IPR036942 BER93_04425 BER93_04425 IPR037066 BER93_04425 BER93_04430 IPR002575 Aminoglycoside phosphotransferase BER93_04430 IPR011009 Protein kinase-like domain BER93_04435 IPR001173 Glycosyltransferase 2-like BER93_04435 IPR029044 Nucleotide-diphospho-sugar transferases BER93_04440 IPR025668 Transposase DDE domain BER93_04445 IPR036068 BER93_04445 BER93_04450 IPR003137 Protease-associated domain, PA BER93_04465 IPR023635 Peptide deformylase BER93_04465 IPR036821 BER93_04465 BER93_04470 IPR003439 ABC transporter-like BER93_04470 IPR003593 AAA+ ATPase domain BER93_04470 IPR017871 ABC transporter, conserved site BER93_04470 IPR022374 ABC transporter, ATP-binding protein, ChvD BER93_04470 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04470 IPR032781 BER93_04470 BER93_04475 IPR024572 Protein of unknown function DUF3315 BER93_04480 IPR001085 Serine hydroxymethyltransferase BER93_04480 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_04480 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_04480 IPR015424 Pyridoxal phosphate-dependent transferase BER93_04480 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site BER93_04480 IPR039429 BER93_04480 BER93_04485 IPR003796 Ribonucleotide reductase regulator NrdR-like BER93_04485 IPR005144 ATP-cone BER93_04490 IPR000182 GNAT domain BER93_04490 IPR016181 Acyl-CoA N-acyltransferase BER93_04495 IPR002125 CMP/dCMP deaminase, zinc-binding BER93_04495 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal BER93_04495 IPR004794 Riboflavin biosynthesis protein RibD BER93_04495 IPR011549 Riboflavin-specific deaminase, C-terminal BER93_04495 IPR016192 APOBEC/CMP deaminase, zinc-binding BER93_04495 IPR016193 Cytidine deaminase-like BER93_04495 IPR024072 Dihydrofolate reductase-like domain BER93_04500 IPR002559 Transposase, IS4-like BER93_04505 IPR002559 Transposase, IS4-like BER93_04505 IPR008490 Transposase InsH, N-terminal BER93_04515 IPR002559 Transposase, IS4-like BER93_04515 IPR008490 Transposase InsH, N-terminal BER93_04520 IPR000683 Oxidoreductase, N-terminal BER93_04520 IPR036291 BER93_04520 BER93_04530 IPR018636 Protein of unknown function DUF2058 BER93_04535 IPR021610 Protein of unknown function DUF3228 BER93_04540 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel BER93_04540 IPR027385 Outer membrane protein beta-barrel BER93_04545 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04555 IPR000043 Adenosylhomocysteinase BER93_04555 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER93_04555 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site BER93_04555 IPR034373 BER93_04555 BER93_04555 IPR036291 BER93_04555 BER93_04565 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_04565 IPR018129 Phosphoenolpyruvate carboxylase, active site BER93_04565 IPR021135 Phosphoenolpyruvate carboxylase BER93_04565 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type BER93_04565 IPR033129 BER93_04565 BER93_04570 IPR001647 DNA-binding HTH domain, TetR-type BER93_04570 IPR009057 Homeodomain-like BER93_04570 IPR036271 BER93_04570 BER93_04575 IPR025178 Domain of unknown function DUF4105 BER93_04585 IPR002133 S-adenosylmethionine synthetase BER93_04585 IPR022628 S-adenosylmethionine synthetase, N-terminal BER93_04585 IPR022629 S-adenosylmethionine synthetase, central domain BER93_04585 IPR022630 S-adenosylmethionine synthetase, C-terminal BER93_04585 IPR022631 S-adenosylmethionine synthetase, conserved site BER93_04585 IPR022636 S-adenosylmethionine synthetase superfamily BER93_04590 IPR007404 Protein of unknown function DUF457 BER93_04595 IPR013216 Methyltransferase type 11 BER93_04595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_04600 IPR001269 tRNA-dihydrouridine synthase BER93_04600 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 BER93_04600 IPR013785 Aldolase-type TIM barrel BER93_04600 IPR018517 tRNA-dihydrouridine synthase, conserved site BER93_04600 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal BER93_04600 IPR032887 BER93_04600 BER93_04610 IPR007156 LemA BER93_04610 IPR023353 LemA-like domain BER93_04615 IPR000829 Diacylglycerol kinase, prokaryotic BER93_04615 IPR036945 BER93_04615 BER93_04625 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_04625 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_04625 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_04625 IPR036097 BER93_04625 BER93_04625 IPR036890 BER93_04625 BER93_04630 IPR001789 Signal transduction response regulator, receiver domain BER93_04630 IPR001867 Signal transduction response regulator, C-terminal BER93_04630 IPR011006 CheY-like superfamily BER93_04630 IPR016032 Signal transduction response regulator, C-terminal effector BER93_04630 IPR036388 BER93_04630 BER93_04635 IPR013830 BER93_04635 BER93_04635 IPR036514 BER93_04635 BER93_04640 IPR003439 ABC transporter-like BER93_04640 IPR003593 AAA+ ATPase domain BER93_04640 IPR017871 ABC transporter, conserved site BER93_04640 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_04645 IPR003838 Permease FtsX-like BER93_04665 IPR007437 Protein of unknown function DUF486 BER93_04675 IPR019600 Hemin uptake protein HemP BER93_04680 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related BER93_04680 IPR023210 NADP-dependent oxidoreductase domain BER93_04680 IPR036812 BER93_04680 BER93_04685 IPR002668 Concentrative nucleoside transporter N-terminal domain BER93_04685 IPR011642 Nucleoside recognition Gate BER93_04685 IPR011657 Concentrative nucleoside transporter C-terminal domain BER93_04690 IPR002139 Ribokinase BER93_04690 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_04690 IPR011611 Carbohydrate kinase PfkB BER93_04690 IPR011877 Ribokinase, bacterial BER93_04690 IPR029056 Ribokinase-like BER93_04695 IPR007621 TPM domain BER93_04700 IPR007621 TPM domain BER93_04705 IPR001640 Prolipoprotein diacylglyceryl transferase BER93_04710 IPR000398 Thymidylate synthase BER93_04710 IPR020940 Thymidylate synthase, active site BER93_04710 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain BER93_04710 IPR036926 BER93_04710 BER93_04720 IPR001796 Dihydrofolate reductase domain BER93_04720 IPR012259 Dihydrofolate reductase BER93_04720 IPR017925 Dihydrofolate reductase conserved site BER93_04720 IPR024072 Dihydrofolate reductase-like domain BER93_04725 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) BER93_04725 IPR004843 Calcineurin-like phosphoesterase domain, apaH type BER93_04725 IPR029052 Metallo-dependent phosphatase-like BER93_04730 IPR007474 ApaG domain BER93_04730 IPR023065 Uncharacterised protein family ApaG BER93_04730 IPR036767 BER93_04730 BER93_04735 IPR001737 Ribosomal RNA adenine methylase transferase BER93_04735 IPR011530 Ribosomal RNA adenine dimethylase BER93_04735 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site BER93_04735 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal BER93_04735 IPR023165 rRNA adenine dimethylase-like BER93_04735 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_04740 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BER93_04740 IPR037510 BER93_04740 BER93_04745 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type BER93_04745 IPR015391 SurA N-terminal BER93_04745 IPR023034 Peptidyl-prolyl isomerase SurA BER93_04745 IPR027304 Trigger factor/SurA domain BER93_04750 IPR005653 Organic solvent tolerance-like, N-terminal BER93_04750 IPR007543 Organic solvent tolerance protein, C-terminal BER93_04750 IPR020889 Lipopolysaccharide assembly, LptD BER93_04755 IPR000286 Histone deacetylase superfamily BER93_04755 IPR023696 Ureohydrolase domain BER93_04755 IPR023801 Histone deacetylase domain BER93_04755 IPR037138 BER93_04755 BER93_04760 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like BER93_04760 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type BER93_04760 IPR036451 BER93_04760 BER93_04770 IPR002938 Monooxygenase, FAD-binding BER93_04770 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 BER93_04770 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase BER93_04770 IPR036188 BER93_04770 BER93_04775 IPR002938 Monooxygenase, FAD-binding BER93_04775 IPR010971 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 BER93_04775 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site BER93_04775 IPR036188 BER93_04775 BER93_04790 IPR000847 Transcription regulator HTH, LysR BER93_04790 IPR005119 LysR, substrate-binding BER93_04790 IPR036388 BER93_04790 BER93_04790 IPR036390 BER93_04790 BER93_04810 IPR011042 Six-bladed beta-propeller, TolB-like BER93_04810 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER93_04815 IPR000683 Oxidoreductase, N-terminal BER93_04815 IPR008354 Glucose-fructose oxidoreductase, bacterial BER93_04815 IPR036291 BER93_04815 BER93_04820 IPR002877 Ribosomal RNA methyltransferase FtsJ domain BER93_04820 IPR011224 Ribosomal RNA large subunit methyltransferase M BER93_04820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_04825 IPR002125 CMP/dCMP deaminase, zinc-binding BER93_04825 IPR016193 Cytidine deaminase-like BER93_04835 IPR000924 Glutamyl/glutaminyl-tRNA synthetase BER93_04835 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_04835 IPR004514 Glutamine-tRNA synthetase BER93_04835 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain BER93_04835 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_04835 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain BER93_04835 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain BER93_04835 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain BER93_04835 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain BER93_04835 IPR022861 Glutamine-tRNA ligase, bacterial BER93_04840 IPR004045 Glutathione S-transferase, N-terminal BER93_04840 IPR036249 BER93_04840 BER93_04840 IPR036282 BER93_04840 BER93_04845 IPR018551 Domain of unknown function DUF2007 BER93_04850 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_04850 IPR036097 BER93_04850 BER93_04855 IPR000792 Transcription regulator LuxR, C-terminal BER93_04855 IPR016032 Signal transduction response regulator, C-terminal effector BER93_04855 IPR029016 GAF domain-like BER93_04855 IPR036388 BER93_04855 BER93_04860 IPR002569 Peptide methionine sulphoxide reductase MsrA BER93_04860 IPR036509 BER93_04860 BER93_04865 IPR001585 Transaldolase BER93_04865 IPR004730 Transaldolase type 1 BER93_04865 IPR013785 Aldolase-type TIM barrel BER93_04865 IPR018225 Transaldolase, active site BER93_04870 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal BER93_04870 IPR023459 Transcription elongation factor GreA/GreB family BER93_04870 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain BER93_04870 IPR036953 BER93_04870 BER93_04875 IPR000847 Transcription regulator HTH, LysR BER93_04875 IPR005119 LysR, substrate-binding BER93_04875 IPR036388 BER93_04875 BER93_04875 IPR036390 BER93_04875 BER93_04880 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II BER93_04880 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site BER93_04880 IPR012081 Alkyl hydroperoxide reductase subunit F BER93_04880 IPR012336 Thioredoxin-like fold BER93_04880 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_04880 IPR036188 BER93_04880 BER93_04880 IPR036249 BER93_04880 BER93_04885 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant BER93_04885 IPR017559 Alkyl hydroperoxide reductase subunit C BER93_04885 IPR019479 Peroxiredoxin, C-terminal BER93_04885 IPR024706 Peroxiredoxin, AhpC-type BER93_04885 IPR036249 BER93_04885 BER93_04890 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_04890 IPR004556 Modification methylase HemK BER93_04890 IPR007848 Methyltransferase small domain BER93_04890 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific BER93_04890 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_04895 IPR000073 Alpha/beta hydrolase fold-1 BER93_04895 IPR002410 Peptidase S33 BER93_04895 IPR005944 Proline iminopeptidase BER93_04895 IPR029058 Alpha/Beta hydrolase fold BER93_04905 IPR007709 N-formylglutamate amidohydrolase BER93_04905 IPR011227 Uncharacterised conserved protein UCP029730 BER93_04910 IPR000086 NUDIX hydrolase domain BER93_04910 IPR015797 NUDIX hydrolase domain-like BER93_04915 IPR002421 5'-3' exonuclease, N-terminal BER93_04915 IPR008918 Helix-hairpin-helix motif, class 2 BER93_04915 IPR020045 5'-3' exonuclease, C-terminal domain BER93_04915 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal BER93_04915 IPR029060 PIN domain-like BER93_04915 IPR036279 BER93_04915 BER93_04920 IPR000415 Nitroreductase-like BER93_04920 IPR026021 Putative NAD(P)H nitroreductase YdjA-like BER93_04920 IPR029479 Nitroreductase BER93_04925 IPR012434 Protein of unknown function DUF1631 BER93_04930 IPR021455 Protein of unknown function DUF3106 BER93_04940 IPR007627 RNA polymerase sigma-70 region 2 BER93_04940 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_04940 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_04940 IPR013325 RNA polymerase sigma factor, region 2 BER93_04940 IPR014284 RNA polymerase sigma-70 like domain BER93_04940 IPR036388 BER93_04940 BER93_04950 IPR002744 Domain of unknown function DUF59 BER93_04950 IPR017776 FeS assembly SUF system protein SufT, putative BER93_04950 IPR034904 BER93_04950 BER93_04955 IPR001544 Aminotransferase, class IV BER93_04955 IPR005786 Branched-chain amino acid aminotransferase II BER93_04955 IPR018300 Aminotransferase, class IV, conserved site BER93_04955 IPR036038 BER93_04955 BER93_04960 IPR002559 Transposase, IS4-like BER93_04970 IPR000209 Peptidase S8/S53 domain BER93_04970 IPR007280 Peptidase, C-terminal, archaeal/bacterial BER93_04970 IPR015500 Peptidase S8, subtilisin-related BER93_04970 IPR022398 Peptidase S8, subtilisin, His-active site BER93_04970 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_04970 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_04970 IPR036852 BER93_04970 BER93_04975 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BER93_04975 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain BER93_04975 IPR036754 BER93_04975 BER93_04980 IPR006034 Asparaginase/glutaminase BER93_04980 IPR027474 L-asparaginase, N-terminal BER93_04980 IPR036152 BER93_04980 BER93_04980 IPR037152 BER93_04980 BER93_04985 IPR018643 Protein of unknown function DUF2069, membrane BER93_04990 IPR005025 NADPH-dependent FMN reductase-like BER93_04990 IPR010089 Flavoprotein WrbA BER93_04990 IPR029039 Flavoprotein-like BER93_04995 IPR017039 Virulence factor BrkB BER93_04995 IPR023679 Uncharacterised protein family UPF0761, bacterial BER93_05000 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant BER93_05000 IPR017937 Thioredoxin, conserved site BER93_05000 IPR036249 BER93_05000 BER93_05010 IPR016898 Polyphosphate kinase 2 BER93_05010 IPR022486 Polyphosphate kinase 2, PA0141 BER93_05010 IPR022488 Polyphosphate kinase-2-related BER93_05010 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05015 IPR001453 Molybdopterin binding domain BER93_05015 IPR012245 Molybdenum cofactor biosynthesis protein MoaB BER93_05015 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria BER93_05015 IPR036425 BER93_05015 BER93_05020 IPR011990 Tetratricopeptide-like helical domain BER93_05020 IPR019734 Tetratricopeptide repeat BER93_05020 IPR029489 O-GlcNAc transferase, C-terminal BER93_05025 IPR000352 Peptide chain release factor class I/class II BER93_05025 IPR004373 Peptide chain release factor 1 BER93_05025 IPR005139 Peptide chain release factor BER93_05030 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase BER93_05030 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BER93_05030 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal BER93_05030 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain BER93_05030 IPR018214 Glutamyl-tRNA reductase, conserved site BER93_05030 IPR036291 BER93_05030 BER93_05030 IPR036343 BER93_05030 BER93_05030 IPR036453 BER93_05030 BER93_05035 IPR011990 Tetratricopeptide-like helical domain BER93_05035 IPR019734 Tetratricopeptide repeat BER93_05040 IPR004565 Outer membrane lipoprotein LolB BER93_05040 IPR029046 Lipoprotein localisation LolA/LolB/LppX BER93_05045 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase BER93_05045 IPR006204 GHMP kinase N-terminal domain BER93_05045 IPR013750 GHMP kinase, C-terminal domain BER93_05045 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_05045 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_05045 IPR036554 BER93_05045 BER93_05055 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site BER93_05055 IPR005946 Ribose-phosphate diphosphokinase BER93_05055 IPR029057 Phosphoribosyltransferase-like BER93_05055 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain BER93_05055 IPR037515 BER93_05055 BER93_05060 IPR001021 Ribosomal protein L25, long-form BER93_05060 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain BER93_05060 IPR020055 Ribosomal protein L25, short-form BER93_05060 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain BER93_05060 IPR020057 Ribosomal protein L25, beta domain BER93_05060 IPR029751 Ribosomal protein L25 BER93_05060 IPR037121 BER93_05060 BER93_05065 IPR001328 Peptidyl-tRNA hydrolase BER93_05065 IPR018171 Peptidyl-tRNA hydrolase, conserved site BER93_05065 IPR036416 BER93_05065 BER93_05070 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 BER93_05070 IPR006073 GTP binding domain BER93_05070 IPR012675 Beta-grasp domain BER93_05070 IPR012676 TGS-like BER93_05070 IPR013029 Domain of unknown function DUF933 BER93_05070 IPR023192 TGS-like domain BER93_05070 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05090 IPR000795 Elongation factor, GTP-binding domain BER93_05090 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BER93_05090 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 BER93_05090 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle BER93_05090 IPR005225 Small GTP-binding protein domain BER93_05090 IPR009000 Translation protein, beta-barrel domain BER93_05090 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER93_05090 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05090 IPR031157 BER93_05090 BER93_05100 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit BER93_05100 IPR005807 SecE subunit of protein translocation complex BER93_05100 IPR038379 BER93_05100 BER93_05105 IPR001062 Transcription antitermination protein, NusG BER93_05105 IPR005824 KOW BER93_05105 IPR006645 NusG, N-terminal BER93_05105 IPR008991 Translation protein SH3-like domain BER93_05105 IPR014722 Ribosomal protein L2 domain 2 BER93_05105 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site BER93_05105 IPR036735 BER93_05105 BER93_05110 IPR000911 Ribosomal protein L11/L12 BER93_05110 IPR006519 Ribosomal protein L11, bacterial-type BER93_05110 IPR020783 Ribosomal protein L11, C-terminal BER93_05110 IPR020784 Ribosomal protein L11, N-terminal BER93_05110 IPR020785 Ribosomal protein L11, conserved site BER93_05110 IPR036769 BER93_05110 BER93_05110 IPR036796 BER93_05110 BER93_05115 IPR002143 Ribosomal protein L1 BER93_05115 IPR005878 Ribosomal protein L1, bacterial-type BER93_05115 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich BER93_05115 IPR023673 Ribosomal protein L1, conserved site BER93_05115 IPR023674 Ribosomal protein L1-like BER93_05115 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein BER93_05120 IPR001790 Ribosomal protein L10/acidic P0 BER93_05120 IPR022973 Ribosomal protein L10 BER93_05125 IPR000206 Ribosomal protein L7/L12 BER93_05125 IPR008932 Ribosomal protein L7/L12, oligomerisation BER93_05125 IPR013823 Ribosomal protein L7/L12, C-terminal BER93_05125 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER93_05125 IPR036235 BER93_05125 BER93_05130 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 BER93_05130 IPR007121 RNA polymerase, beta subunit, conserved site BER93_05130 IPR007641 RNA polymerase Rpb2, domain 7 BER93_05130 IPR007642 RNA polymerase Rpb2, domain 2 BER93_05130 IPR007644 RNA polymerase, beta subunit, protrusion BER93_05130 IPR007645 RNA polymerase Rpb2, domain 3 BER93_05130 IPR010243 DNA-directed RNA polymerase, beta subunit BER93_05130 IPR014724 RNA polymerase Rpb2, OB-fold BER93_05130 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain BER93_05130 IPR037033 BER93_05130 BER93_05130 IPR037034 BER93_05130 BER93_05135 IPR000722 RNA polymerase, alpha subunit BER93_05135 IPR006592 RNA polymerase, N-terminal BER93_05135 IPR007066 RNA polymerase Rpb1, domain 3 BER93_05135 IPR007080 RNA polymerase Rpb1, domain 1 BER93_05135 IPR007081 RNA polymerase Rpb1, domain 5 BER93_05135 IPR007083 RNA polymerase Rpb1, domain 4 BER93_05135 IPR012754 DNA-directed RNA polymerase, subunit beta-prime BER93_05135 IPR038120 BER93_05135 BER93_05140 IPR005679 Ribosomal protein S12, bacteria BER93_05140 IPR006032 Ribosomal protein S12/S23 BER93_05140 IPR012340 Nucleic acid-binding, OB-fold BER93_05145 IPR000235 Ribosomal protein S5/S7 BER93_05145 IPR005717 Ribosomal protein S7, bacterial/organellar-type BER93_05145 IPR020606 Ribosomal protein S7, conserved site BER93_05145 IPR023798 Ribosomal protein S7 domain BER93_05145 IPR036823 BER93_05145 BER93_05150 IPR000640 Translation elongation factor EFG, V domain BER93_05150 IPR000795 Elongation factor, GTP-binding domain BER93_05150 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 BER93_05150 IPR004540 Translation elongation factor EFG/EF2 BER93_05150 IPR005225 Small GTP-binding protein domain BER93_05150 IPR005517 Translation elongation factor EFG/EF2, domain IV BER93_05150 IPR009000 Translation protein, beta-barrel domain BER93_05150 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_05150 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_05150 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05150 IPR031157 BER93_05150 BER93_05150 IPR035647 BER93_05150 BER93_05155 IPR000795 Elongation factor, GTP-binding domain BER93_05155 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BER93_05155 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 BER93_05155 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle BER93_05155 IPR005225 Small GTP-binding protein domain BER93_05155 IPR009000 Translation protein, beta-barrel domain BER93_05155 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER93_05155 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05155 IPR031157 BER93_05155 BER93_05160 IPR001848 Ribosomal protein S10 BER93_05160 IPR018268 Ribosomal protein S10, conserved site BER93_05160 IPR027486 Ribosomal protein S10 domain BER93_05160 IPR036838 BER93_05160 BER93_05165 IPR000597 Ribosomal protein L3 BER93_05165 IPR009000 Translation protein, beta-barrel domain BER93_05165 IPR019926 Ribosomal protein L3, conserved site BER93_05165 IPR019927 Ribosomal protein L3, bacterial/organelle-type BER93_05170 IPR002136 Ribosomal protein L4/L1e BER93_05170 IPR013005 Ribosomal protein L4/L1e, bacterial-type BER93_05170 IPR023574 Ribosomal protein L4 domain BER93_05175 IPR012677 Nucleotide-binding, alpha-beta plait BER93_05175 IPR012678 Ribosomal protein L23/L15e core domain BER93_05175 IPR013025 Ribosomal protein L25/L23 BER93_05180 IPR002171 Ribosomal protein L2 BER93_05180 IPR005880 Ribosomal protein L2, bacterial/organellar-type BER93_05180 IPR008991 Translation protein SH3-like domain BER93_05180 IPR012340 Nucleic acid-binding, OB-fold BER93_05180 IPR014722 Ribosomal protein L2 domain 2 BER93_05180 IPR014726 Ribosomal protein L2, domain 3 BER93_05180 IPR022666 Ribosomal Proteins L2, RNA binding domain BER93_05180 IPR022669 Ribosomal protein L2, C-terminal BER93_05180 IPR022671 Ribosomal protein L2, conserved site BER93_05185 IPR002222 Ribosomal protein S19/S15 BER93_05185 IPR005732 Ribosomal protein S19, bacterial-type BER93_05185 IPR023575 Ribosomal protein S19, superfamily BER93_05190 IPR001063 Ribosomal protein L22/L17 BER93_05190 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type BER93_05190 IPR018260 Ribosomal protein L22/L17, conserved site BER93_05190 IPR036394 BER93_05190 BER93_05195 IPR001351 Ribosomal protein S3, C-terminal BER93_05195 IPR004044 K Homology domain, type 2 BER93_05195 IPR004087 K Homology domain BER93_05195 IPR005704 Ribosomal protein S3, bacterial BER93_05195 IPR009019 K homology domain, prokaryotic type BER93_05195 IPR015946 K homology domain-like, alpha/beta BER93_05195 IPR018280 Ribosomal protein S3, conserved site BER93_05195 IPR036419 BER93_05195 BER93_05200 IPR000114 Ribosomal protein L16 BER93_05200 IPR016180 Ribosomal protein L10e/L16 BER93_05200 IPR020798 Ribosomal protein L16, conserved site BER93_05200 IPR036920 BER93_05200 BER93_05205 IPR001854 Ribosomal protein L29 BER93_05205 IPR036049 BER93_05205 BER93_05210 IPR000266 Ribosomal protein S17 BER93_05210 IPR012340 Nucleic acid-binding, OB-fold BER93_05210 IPR019984 Ribosomal protein S17, bacterial-type BER93_05215 IPR000218 Ribosomal protein L14b/L23e BER93_05215 IPR005745 Ribosomal protein L14, bacterial-type BER93_05215 IPR019972 Ribosomal protein L14 conserved site BER93_05215 IPR036853 BER93_05215 BER93_05220 IPR003256 Ribosomal protein L24 BER93_05220 IPR005824 KOW BER93_05220 IPR008991 Translation protein SH3-like domain BER93_05220 IPR014722 Ribosomal protein L2 domain 2 BER93_05225 IPR002132 Ribosomal protein L5 BER93_05225 IPR020929 Ribosomal protein L5, conserved site BER93_05225 IPR020930 Ribosomal protein L5, bacterial-type BER93_05225 IPR022803 Ribosomal protein L5 domain BER93_05225 IPR031309 BER93_05225 BER93_05225 IPR031310 BER93_05225 BER93_05230 IPR001209 Ribosomal protein S14 BER93_05230 IPR023036 Ribosomal protein S14, bacterial/plastid BER93_05235 IPR000630 Ribosomal protein S8 BER93_05235 IPR035987 BER93_05235 BER93_05240 IPR000702 Ribosomal protein L6 BER93_05240 IPR002358 Ribosomal protein L6, conserved site BER93_05240 IPR019906 Ribosomal protein L6, bacterial-type BER93_05240 IPR020040 Ribosomal protein L6, alpha-beta domain BER93_05240 IPR036789 BER93_05240 BER93_05245 IPR004389 Ribosomal protein L18, bacterial-type BER93_05245 IPR005484 Ribosomal protein L18/L5 BER93_05250 IPR005324 Ribosomal protein S5, C-terminal BER93_05250 IPR005712 Ribosomal protein S5, bacterial-type BER93_05250 IPR013810 Ribosomal protein S5, N-terminal BER93_05250 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_05250 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_05255 IPR005996 Ribosomal protein L30, bacterial-type BER93_05255 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BER93_05255 IPR036919 BER93_05255 BER93_05260 IPR001196 Ribosomal protein L15, conserved site BER93_05260 IPR005749 Ribosomal protein L15, bacterial-type BER93_05260 IPR021131 Ribosomal protein L18e/L15P BER93_05260 IPR030878 BER93_05260 BER93_05260 IPR036227 BER93_05260 BER93_05265 IPR002208 SecY/SEC61-alpha family BER93_05265 IPR023201 SecY subunit domain BER93_05265 IPR026593 Protein translocase subunit SecY BER93_05265 IPR030659 BER93_05265 BER93_05270 IPR001892 Ribosomal protein S13 BER93_05270 IPR010979 Ribosomal protein S13-like, H2TH BER93_05270 IPR018269 Ribosomal protein S13, conserved site BER93_05270 IPR019980 Ribosomal protein S13, bacterial-type BER93_05270 IPR027437 30s ribosomal protein S13, C-terminal BER93_05275 IPR001971 Ribosomal protein S11 BER93_05275 IPR018102 Ribosomal S11, conserved site BER93_05275 IPR019981 Ribosomal protein S11, bacterial-type BER93_05275 IPR036967 BER93_05275 BER93_05280 IPR001912 Ribosomal protein S4/S9, N-terminal BER93_05280 IPR002942 RNA-binding S4 domain BER93_05280 IPR005709 Ribosomal protein S4, bacterial-type BER93_05280 IPR018079 Ribosomal protein S4, conserved site BER93_05280 IPR036986 BER93_05280 BER93_05285 IPR011260 RNA polymerase, alpha subunit, C-terminal BER93_05285 IPR011262 DNA-directed RNA polymerase, insert domain BER93_05285 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type BER93_05285 IPR011773 DNA-directed RNA polymerase, alpha subunit BER93_05285 IPR036603 BER93_05285 BER93_05285 IPR036643 BER93_05285 BER93_05290 IPR000456 Ribosomal protein L17 BER93_05290 IPR036373 BER93_05290 BER93_05295 IPR003752 Disulphide bond formation protein DsbB/BdbC BER93_05295 IPR022920 Disulphide bond formation protein DsbB BER93_05295 IPR023380 Disulphide bond formation protein DsbB-like domain BER93_05315 IPR002018 Carboxylesterase, type B BER93_05315 IPR029058 Alpha/Beta hydrolase fold BER93_05325 IPR002018 Carboxylesterase, type B BER93_05325 IPR029058 Alpha/Beta hydrolase fold BER93_05330 IPR004314 Domain of unknown function DUF239 BER93_05340 IPR001185 Large-conductance mechanosensitive channel BER93_05340 IPR019823 Large-conductance mechanosensitive channel, conserved site BER93_05340 IPR036019 BER93_05340 BER93_05340 IPR037673 BER93_05340 BER93_05345 IPR011234 Fumarylacetoacetase, C-terminal-related BER93_05345 IPR036663 BER93_05345 BER93_05355 IPR004680 Citrate transporter-like domain BER93_05355 IPR006037 Regulator of K+ conductance, C-terminal BER93_05355 IPR036721 BER93_05355 BER93_05360 IPR003358 tRNA (guanine-N-7) methyltransferase BER93_05360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_05365 IPR008867 Thiazole biosynthesis BER93_05365 IPR013785 Aldolase-type TIM barrel BER93_05365 IPR033983 BER93_05365 BER93_05370 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 BER93_05370 IPR010035 ThiS, thiamine-biosynthesis BER93_05370 IPR012675 Beta-grasp domain BER93_05370 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER93_05375 IPR001087 Lipase, GDSL BER93_05375 IPR005546 Autotransporter beta-domain BER93_05375 IPR017186 Lipase, autotransporter EstA BER93_05375 IPR036514 BER93_05375 BER93_05375 IPR036709 BER93_05375 BER93_05385 IPR002104 Integrase, catalytic BER93_05385 IPR010998 Integrase, Lambda-type, N-terminal BER93_05385 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_05385 IPR013762 Integrase-like, catalytic core BER93_05385 IPR025166 Domain of unknown function DUF4102 BER93_05385 IPR038488 BER93_05385 BER93_05395 IPR002559 Transposase, IS4-like BER93_05395 IPR025161 Putative transposase IS4/IS5 family BER93_05410 IPR001387 Cro/C1-type helix-turn-helix domain BER93_05410 IPR010982 Lambda repressor-like, DNA-binding domain BER93_05420 IPR002559 Transposase, IS4-like BER93_05420 IPR025161 Putative transposase IS4/IS5 family BER93_05430 IPR001584 Integrase, catalytic core BER93_05430 IPR012337 Ribonuclease H-like domain BER93_05430 IPR025948 HTH-like domain BER93_05430 IPR036397 BER93_05430 BER93_05435 IPR002514 Transposase IS3/IS911family BER93_05435 IPR009057 Homeodomain-like BER93_05445 IPR000160 GGDEF domain BER93_05445 IPR029787 Nucleotide cyclase BER93_05445 IPR035965 BER93_05445 BER93_05455 IPR014942 Protein of unknown function DUF1814 BER93_05460 IPR021561 Protein of unknown function DUF2893 BER93_05460 IPR033455 BER93_05460 BER93_05465 IPR022213 Protein of unknown function DUF3742 BER93_05475 IPR002559 Transposase, IS4-like BER93_05485 IPR025139 Domain of unknown function DUF4062 BER93_05515 IPR001387 Cro/C1-type helix-turn-helix domain BER93_05515 IPR010982 Lambda repressor-like, DNA-binding domain BER93_05520 IPR003688 Ti-type conjugative transfer system, TraG-like BER93_05520 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05535 IPR002477 Peptidoglycan binding-like BER93_05535 IPR036365 BER93_05535 BER93_05535 IPR036366 BER93_05535 BER93_05545 IPR003439 ABC transporter-like BER93_05545 IPR003593 AAA+ ATPase domain BER93_05545 IPR005074 Peptidase C39, bacteriocin processing BER93_05545 IPR011527 ABC transporter type 1, transmembrane domain BER93_05545 IPR017871 ABC transporter, conserved site BER93_05545 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05545 IPR036640 BER93_05545 BER93_05555 IPR002559 Transposase, IS4-like BER93_05555 IPR025161 Putative transposase IS4/IS5 family BER93_05580 IPR036259 BER93_05580 BER93_05585 IPR002514 Transposase IS3/IS911family BER93_05585 IPR009057 Homeodomain-like BER93_05605 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER93_05605 IPR036452 BER93_05605 BER93_05615 IPR001647 DNA-binding HTH domain, TetR-type BER93_05615 IPR009057 Homeodomain-like BER93_05620 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site BER93_05620 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_05620 IPR029033 Histidine phosphatase superfamily BER93_05625 IPR000631 YjeF C-terminal domain BER93_05625 IPR029056 Ribokinase-like BER93_05635 IPR002559 Transposase, IS4-like BER93_05635 IPR025161 Putative transposase IS4/IS5 family BER93_05645 IPR002347 Glucose/ribitol dehydrogenase BER93_05645 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_05645 IPR036291 BER93_05645 BER93_05655 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II BER93_05655 IPR000595 Cyclic nucleotide-binding domain BER93_05655 IPR014710 RmlC-like jelly roll fold BER93_05655 IPR018490 Cyclic nucleotide-binding-like BER93_05655 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_05655 IPR036188 BER93_05655 BER93_05660 IPR001633 EAL domain BER93_05660 IPR035919 BER93_05660 BER93_05665 IPR003607 HD/PDEase domain BER93_05675 IPR006700 Ribosomal RNA small subunit methyltransferase E BER93_05675 IPR015947 PUA-like domain BER93_05675 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_05675 IPR029028 Alpha/beta knot methyltransferases BER93_05680 IPR005814 Aminotransferase class-III BER93_05680 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA BER93_05680 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_05680 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_05680 IPR015424 Pyridoxal phosphate-dependent transferase BER93_05685 IPR000086 NUDIX hydrolase domain BER93_05685 IPR015797 NUDIX hydrolase domain-like BER93_05685 IPR020084 NUDIX hydrolase, conserved site BER93_05690 IPR000760 Inositol monophosphatase BER93_05690 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial BER93_05690 IPR020550 Inositol monophosphatase, conserved site BER93_05690 IPR020583 Inositol monophosphatase, metal-binding site BER93_05695 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BER93_05695 IPR011551 NTP pyrophosphohydrolase MazG, bacterial BER93_05700 IPR006222 Glycine cleavage T-protein, N-terminal BER93_05700 IPR006223 Glycine cleavage system T protein BER93_05700 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain BER93_05700 IPR022903 Glycine cleavage system T protein, bacteria BER93_05700 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 BER93_05700 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA BER93_05700 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain BER93_05705 IPR002930 Glycine cleavage system H-protein BER93_05705 IPR011053 Single hybrid motif BER93_05705 IPR017453 Glycine cleavage system H-protein, subgroup BER93_05705 IPR033753 BER93_05705 BER93_05715 IPR001466 Beta-lactamase-related BER93_05715 IPR012338 Beta-lactamase/transpeptidase-like BER93_05725 IPR009732 Protein of unknown function DUF1304 BER93_05730 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_05730 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain BER93_05730 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_05730 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type BER93_05730 IPR036250 BER93_05730 BER93_05730 IPR037069 BER93_05730 BER93_05735 IPR029058 Alpha/Beta hydrolase fold BER93_05740 IPR001647 DNA-binding HTH domain, TetR-type BER93_05740 IPR009057 Homeodomain-like BER93_05740 IPR036271 BER93_05740 BER93_05755 IPR002559 Transposase, IS4-like BER93_05755 IPR008490 Transposase InsH, N-terminal BER93_05760 IPR036412 BER93_05760 BER93_05765 IPR002559 Transposase, IS4-like BER93_05775 IPR002514 Transposase IS3/IS911family BER93_05775 IPR009057 Homeodomain-like BER93_05785 IPR000397 Heat shock protein Hsp33 BER93_05785 IPR016153 Heat shock protein Hsp33, N-terminal BER93_05785 IPR016154 Heat shock protein Hsp33, C-terminal BER93_05785 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain BER93_05790 IPR001264 Glycosyl transferase, family 51 BER93_05790 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase BER93_05790 IPR023346 Lysozyme-like domain BER93_05790 IPR036950 BER93_05790 BER93_05795 IPR001173 Glycosyltransferase 2-like BER93_05795 IPR029044 Nucleotide-diphospho-sugar transferases BER93_05800 IPR000644 CBS domain BER93_05805 IPR007844 AsmA BER93_05810 IPR004254 Hly-III-related BER93_05810 IPR005744 HylII BER93_05815 IPR000795 Elongation factor, GTP-binding domain BER93_05815 IPR004548 Peptide chain release factor 3 BER93_05815 IPR005225 Small GTP-binding protein domain BER93_05815 IPR009000 Translation protein, beta-barrel domain BER93_05815 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05815 IPR031157 BER93_05815 BER93_05815 IPR032090 BER93_05815 BER93_05815 IPR035647 BER93_05815 BER93_05815 IPR038467 BER93_05815 BER93_05830 IPR000073 Alpha/beta hydrolase fold-1 BER93_05830 IPR008220 Homoserine acetyltransferase BER93_05830 IPR029058 Alpha/Beta hydrolase fold BER93_05835 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_05835 IPR011821 O-succinylhomoserine (thiol)-lyase BER93_05835 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_05835 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_05835 IPR015424 Pyridoxal phosphate-dependent transferase BER93_05840 IPR001342 Homoserine dehydrogenase, catalytic BER93_05840 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding BER93_05840 IPR019811 Homoserine dehydrogenase, conserved site BER93_05840 IPR022697 Homoserine dehydrogenase lacking ACT domain BER93_05840 IPR036291 BER93_05840 BER93_05845 IPR000073 Alpha/beta hydrolase fold-1 BER93_05845 IPR000639 Epoxide hydrolase-like BER93_05845 IPR029058 Alpha/Beta hydrolase fold BER93_05855 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_05855 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_05855 IPR015424 Pyridoxal phosphate-dependent transferase BER93_05865 IPR008554 Glutaredoxin-like BER93_05865 IPR036249 BER93_05865 BER93_05870 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER93_05870 IPR036761 BER93_05870 BER93_05875 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase BER93_05875 IPR016174 Di-haem cytochrome, transmembrane BER93_05880 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER93_05880 IPR036761 BER93_05880 BER93_05885 IPR001789 Signal transduction response regulator, receiver domain BER93_05885 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_05885 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_05885 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_05885 IPR011006 CheY-like superfamily BER93_05885 IPR011110 Two component regulator propeller BER93_05885 IPR011123 Two component regulator three Y BER93_05885 IPR013783 Immunoglobulin-like fold BER93_05885 IPR015943 WD40/YVTN repeat-like-containing domain BER93_05885 IPR036097 BER93_05885 BER93_05885 IPR036890 BER93_05885 BER93_05900 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase BER93_05900 IPR011013 Galactose mutarotase-like domain BER93_05900 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup BER93_05900 IPR015443 Aldose 1-epimerase BER93_05905 IPR002541 Cytochrome c assembly protein BER93_05910 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain BER93_05910 IPR003593 AAA+ ATPase domain BER93_05910 IPR004125 Signal recognition particle, SRP54 subunit, M-domain BER93_05910 IPR004780 Signal recognition particle protein Ffh BER93_05910 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle BER93_05910 IPR022941 Signal recognition particle, SRP54 subunit BER93_05910 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_05910 IPR036891 BER93_05910 BER93_05920 IPR004136 2-nitropropane dioxygenase, NPD BER93_05920 IPR013785 Aldolase-type TIM barrel BER93_05925 IPR001544 Aminotransferase, class IV BER93_05925 IPR036038 BER93_05925 BER93_05930 IPR000307 Ribosomal protein S16 BER93_05930 IPR020592 Ribosomal protein S16, conserved site BER93_05930 IPR023803 Ribosomal protein S16 domain BER93_05935 IPR002676 RimM protein BER93_05935 IPR009000 Translation protein, beta-barrel domain BER93_05935 IPR011033 PRC-barrel-like BER93_05935 IPR011961 16S rRNA processing protein RimM BER93_05935 IPR027275 PRC-barrel domain BER93_05935 IPR036976 BER93_05935 BER93_05940 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria BER93_05940 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain BER93_05940 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal BER93_05940 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_05940 IPR029028 Alpha/beta knot methyltransferases BER93_05945 IPR001857 Ribosomal protein L19 BER93_05945 IPR008991 Translation protein SH3-like domain BER93_05945 IPR018257 Ribosomal protein L19, conserved site BER93_05945 IPR038657 BER93_05945 BER93_05950 IPR002528 Multi antimicrobial extrusion protein BER93_05955 IPR002942 RNA-binding S4 domain BER93_05955 IPR025708 Heat shock protein 15 BER93_05955 IPR036986 BER93_05955 BER93_05960 IPR008490 Transposase InsH, N-terminal BER93_05985 IPR000160 GGDEF domain BER93_05985 IPR029787 Nucleotide cyclase BER93_06000 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain BER93_06000 IPR002320 Threonine-tRNA ligase, class IIa BER93_06000 IPR004095 TGS BER93_06000 IPR004154 Anticodon-binding BER93_06000 IPR012675 Beta-grasp domain BER93_06000 IPR012676 TGS-like BER93_06000 IPR012947 Threonyl/alanyl tRNA synthetase, SAD BER93_06000 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain BER93_06000 IPR036621 BER93_06000 BER93_06005 IPR001288 Translation initiation factor 3 BER93_06005 IPR019813 Translation initiation factor 3, conserved site BER93_06005 IPR019814 Translation initiation factor 3, N-terminal BER93_06005 IPR019815 Translation initiation factor 3, C-terminal BER93_06005 IPR036787 BER93_06005 BER93_06005 IPR036788 BER93_06005 BER93_06010 IPR001706 Ribosomal protein L35, non-mitochondrial BER93_06010 IPR018265 Ribosomal protein L35, conserved site BER93_06010 IPR021137 Ribosomal protein L35 BER93_06010 IPR037229 BER93_06010 BER93_06015 IPR005813 Ribosomal protein L20 BER93_06015 IPR035566 BER93_06015 BER93_06020 IPR002319 Phenylalanyl-tRNA synthetase BER93_06020 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal BER93_06020 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit BER93_06020 IPR010978 tRNA-binding arm BER93_06020 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial BER93_06025 IPR002547 tRNA-binding domain BER93_06025 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit BER93_06025 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding BER93_06025 IPR005146 B3/B4 tRNA-binding domain BER93_06025 IPR005147 tRNA synthetase, B5-domain BER93_06025 IPR009061 DNA binding domain, putative BER93_06025 IPR012340 Nucleic acid-binding, OB-fold BER93_06025 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 BER93_06025 IPR036690 BER93_06025 BER93_06030 IPR000119 Histone-like bacterial DNA-binding protein BER93_06030 IPR005684 Integration host factor, alpha subunit BER93_06030 IPR010992 Integration host factor (IHF)-like DNA-binding domain BER93_06030 IPR020816 Histone-like DNA-binding protein, conserved site BER93_06035 IPR000551 MerR-type HTH domain BER93_06035 IPR009061 DNA binding domain, putative BER93_06045 IPR003715 Polysaccharide export protein BER93_06045 IPR019554 Soluble ligand binding domain BER93_06050 IPR003856 Lipopolysaccharide biosynthesis BER93_06050 IPR032807 BER93_06050 BER93_06055 IPR003362 Bacterial sugar transferase BER93_06055 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ BER93_06055 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase BER93_06065 IPR002656 Acyltransferase 3 BER93_06070 IPR002656 Acyltransferase 3 BER93_06075 IPR001296 Glycosyl transferase, family 1 BER93_06075 IPR028098 Glycosyltransferase subfamily 4, N-terminal domain BER93_06095 IPR007345 Polysaccharide pyruvyl transferase BER93_06100 IPR004629 Glycosyl transferase WecB/TagA/CpsF BER93_06110 IPR005474 Transketolase, N-terminal BER93_06110 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_06110 IPR005477 Deoxyxylulose-5-phosphate synthase BER93_06110 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II BER93_06110 IPR020826 Transketolase binding site BER93_06110 IPR029061 Thiamin diphosphate-binding fold BER93_06110 IPR033248 BER93_06110 BER93_06120 IPR003615 HNH nuclease BER93_06120 IPR029471 HNH endonuclease 5 BER93_06125 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_06125 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_06125 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain BER93_06125 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_06125 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria BER93_06125 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain BER93_06125 IPR036250 BER93_06125 BER93_06125 IPR037069 BER93_06125 BER93_06130 IPR004864 Late embryogenesis abundant protein, LEA-14 BER93_06135 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BER93_06135 IPR002446 Lipocalin, bacterial BER93_06135 IPR012674 Calycin BER93_06135 IPR022271 Lipocalin, ApoD type BER93_06135 IPR022272 Lipocalin family conserved site BER93_06155 IPR035901 BER93_06155 BER93_06160 IPR019626 Stress-induced protein, KGG, repeat BER93_06170 IPR019410 Nicotinamide N-methyltransferase-like BER93_06170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_06190 IPR007457 Fe(II) trafficking protein YggX BER93_06190 IPR036766 BER93_06190 BER93_06195 IPR000445 Helix-hairpin-helix motif BER93_06195 IPR003265 HhH-GPD domain BER93_06195 IPR004035 Endonuclease III, iron-sulphur binding site BER93_06195 IPR004036 Endonuclease III-like, conserved site-2 BER93_06195 IPR005760 A/G-specific adenine glycosylase MutY BER93_06195 IPR011257 DNA glycosylase BER93_06195 IPR015797 NUDIX hydrolase domain-like BER93_06195 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER93_06195 IPR029119 MutY, C-terminal BER93_06200 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain BER93_06200 IPR003593 AAA+ ATPase domain BER93_06200 IPR004390 Signal-recognition particle receptor FtsY BER93_06200 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle BER93_06200 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_06205 IPR009057 Homeodomain-like BER93_06205 IPR013656 PAS fold-4 BER93_06205 IPR018060 DNA binding HTH domain, AraC-type BER93_06205 IPR018062 HTH domain AraC-type, conserved site BER93_06205 IPR020449 Transcription regulator HTH, AraC- type BER93_06205 IPR035965 BER93_06205 BER93_06210 IPR008794 Proline racemase family BER93_06215 IPR006076 FAD dependent oxidoreductase BER93_06215 IPR036188 BER93_06215 BER93_06220 IPR036010 BER93_06220 BER93_06225 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II BER93_06225 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B BER93_06225 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_06225 IPR036188 BER93_06225 BER93_06230 IPR002220 DapA-like BER93_06230 IPR013785 Aldolase-type TIM barrel BER93_06235 IPR015590 Aldehyde dehydrogenase domain BER93_06235 IPR016161 Aldehyde/histidinol dehydrogenase BER93_06235 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_06235 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_06240 IPR000587 Creatinase, N-terminal BER93_06240 IPR000994 Peptidase M24, structural domain BER93_06240 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BER93_06240 IPR036005 BER93_06240 BER93_06245 IPR010281 Protein of unknown function DUF885 BER93_06250 IPR010281 Protein of unknown function DUF885 BER93_06255 IPR002293 Amino acid/polyamine transporter I BER93_06260 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_06260 IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal BER93_06260 IPR029058 Alpha/Beta hydrolase fold BER93_06260 IPR038554 BER93_06260 BER93_06280 IPR002559 Transposase, IS4-like BER93_06280 IPR008490 Transposase InsH, N-terminal BER93_06290 IPR000209 Peptidase S8/S53 domain BER93_06290 IPR015366 Peptidase S53, propeptide BER93_06290 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_06290 IPR036852 BER93_06290 BER93_06295 IPR008928 Six-hairpin glycosidase-like BER93_06295 IPR012341 Six-hairpin glycosidase BER93_06300 IPR000531 TonB-dependent receptor, beta-barrel BER93_06300 IPR012910 TonB-dependent receptor, plug BER93_06300 IPR036942 BER93_06300 BER93_06300 IPR037066 BER93_06300 BER93_06305 IPR011989 Armadillo-like helical BER93_06305 IPR016024 Armadillo-type fold BER93_06315 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_06320 IPR000531 TonB-dependent receptor, beta-barrel BER93_06320 IPR012910 TonB-dependent receptor, plug BER93_06320 IPR037066 BER93_06320 BER93_06345 IPR002514 Transposase IS3/IS911family BER93_06345 IPR009057 Homeodomain-like BER93_06350 IPR002559 Transposase, IS4-like BER93_06350 IPR008490 Transposase InsH, N-terminal BER93_06355 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_06360 IPR005265 Uncharacterised protein family UPF0093 BER93_06365 IPR001095 Acetyl-CoA carboxylase, alpha subunit BER93_06365 IPR029045 ClpP/crotonase-like domain BER93_06370 IPR003141 Polymerase/histidinol phosphatase, N-terminal BER93_06370 IPR004013 PHP, C-terminal BER93_06370 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_06370 IPR004805 DNA polymerase III, alpha subunit BER93_06370 IPR011708 Bacterial DNA polymerase III, alpha subunit BER93_06370 IPR012340 Nucleic acid-binding, OB-fold BER93_06370 IPR016195 Polymerase/histidinol phosphatase-like BER93_06370 IPR029460 DNA polymerase, helix-hairpin-helix motif BER93_06375 IPR012337 Ribonuclease H-like domain BER93_06375 IPR022898 Ribonuclease HII BER93_06375 IPR024567 Ribonuclease HII/HIII domain BER93_06375 IPR036397 BER93_06375 BER93_06380 IPR003835 Glycosyl transferase, family 19 BER93_06385 IPR001451 Bacterial transferase hexapeptide repeat BER93_06385 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase BER93_06385 IPR011004 Trimeric LpxA-like BER93_06385 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal BER93_06385 IPR037157 BER93_06385 BER93_06390 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ BER93_06390 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ BER93_06390 IPR029069 HotDog domain BER93_06395 IPR001451 Bacterial transferase hexapeptide repeat BER93_06395 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase BER93_06395 IPR011004 Trimeric LpxA-like BER93_06395 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region BER93_06405 IPR000184 Bacterial surface antigen (D15) BER93_06405 IPR010827 Surface antigen variable number BER93_06405 IPR023707 Outer membrane protein assembly factor BamA BER93_06410 IPR001478 PDZ domain BER93_06410 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase BER93_06410 IPR008915 Peptidase M50 BER93_06410 IPR036034 BER93_06410 BER93_06415 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase BER93_06415 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal BER93_06415 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal BER93_06415 IPR026877 DXP reductoisomerase C-terminal domain BER93_06415 IPR036169 BER93_06415 BER93_06415 IPR036291 BER93_06415 BER93_06420 IPR000374 Phosphatidate cytidylyltransferase BER93_06425 IPR001441 Decaprenyl diphosphate synthase-like BER93_06425 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site BER93_06425 IPR036424 BER93_06425 BER93_06430 IPR002661 Ribosome recycling factor BER93_06430 IPR023584 Ribosome recycling factor domain BER93_06430 IPR036191 BER93_06430 BER93_06435 IPR001048 Aspartate/glutamate/uridylate kinase BER93_06435 IPR011817 Uridylate kinase BER93_06435 IPR015963 Uridylate kinase, bacteria BER93_06435 IPR036393 BER93_06435 BER93_06445 IPR001816 Translation elongation factor EFTs/EF1B BER93_06445 IPR009060 UBA-like BER93_06445 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation BER93_06445 IPR018101 Translation elongation factor Ts, conserved site BER93_06445 IPR036402 BER93_06445 BER93_06450 IPR001865 Ribosomal protein S2 BER93_06450 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid BER93_06450 IPR018130 Ribosomal protein S2, conserved site BER93_06450 IPR023591 Ribosomal protein S2, flavodoxin-like domain BER93_06455 IPR008962 PapD-like BER93_06455 IPR016147 PapD, N-terminal, bacterial BER93_06465 IPR007893 Spore coat protein U BER93_06470 IPR000015 Outer membrane usher protein BER93_06470 IPR025949 PapC-like, C-terminal domain BER93_06475 IPR008962 PapD-like BER93_06475 IPR013783 Immunoglobulin-like fold BER93_06475 IPR016147 PapD, N-terminal, bacterial BER93_06480 IPR007893 Spore coat protein U BER93_06485 IPR000994 Peptidase M24, structural domain BER93_06485 IPR001714 Peptidase M24, methionine aminopeptidase BER93_06485 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 BER93_06485 IPR036005 BER93_06485 BER93_06490 IPR003607 HD/PDEase domain BER93_06490 IPR006674 HD domain BER93_06490 IPR010043 Protein-PII uridylyltransferase BER93_06490 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase BER93_06495 IPR001451 Bacterial transferase hexapeptide repeat BER93_06495 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family BER93_06495 IPR011004 Trimeric LpxA-like BER93_06495 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 BER93_06495 IPR037133 BER93_06495 BER93_06500 IPR006504 Transcriptional regulator Spx/MgsR BER93_06500 IPR006660 Arsenate reductase-like BER93_06500 IPR036249 BER93_06500 BER93_06505 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site BER93_06505 IPR002933 Peptidase M20 BER93_06505 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria BER93_06505 IPR011650 Peptidase M20, dimerisation domain BER93_06505 IPR036264 BER93_06505 BER93_06510 IPR001962 Asparagine synthase BER93_06510 IPR006426 Asparagine synthase, glutamine-hydrolyzing BER93_06510 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_06510 IPR017932 Glutamine amidotransferase type 2 domain BER93_06510 IPR024286 Domain of unknown function DUF3700 BER93_06510 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_06515 IPR006626 Parallel beta-helix repeat BER93_06515 IPR006633 Carbohydrate-binding/sugar hydrolysis domain BER93_06515 IPR011050 Pectin lyase fold/virulence factor BER93_06515 IPR012334 Pectin lyase fold BER93_06515 IPR022441 Parallel beta-helix repeat-2 BER93_06515 IPR039448 BER93_06515 BER93_06520 IPR000531 TonB-dependent receptor, beta-barrel BER93_06520 IPR010105 TonB-dependent siderophore receptor BER93_06520 IPR010917 TonB-dependent receptor, conserved site BER93_06520 IPR012910 TonB-dependent receptor, plug BER93_06520 IPR036942 BER93_06520 BER93_06520 IPR037066 BER93_06520 BER93_06525 IPR002692 Penicillin amidase-like BER93_06525 IPR014395 Penicillin/cephalosporin acylase BER93_06525 IPR023343 Penicillin amidase type, domain1 BER93_06525 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_06530 IPR002559 Transposase, IS4-like BER93_06535 IPR002024 Bacterioferritin BER93_06535 IPR008331 Ferritin/DPS protein domain BER93_06535 IPR009078 Ferritin-like superfamily BER93_06535 IPR012347 Ferritin-related BER93_06545 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal BER93_06545 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative BER93_06545 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel BER93_06545 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain BER93_06545 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta BER93_06545 IPR013760 DNA topoisomerase, type IIA-like domain BER93_06545 IPR035516 BER93_06545 BER93_06550 IPR000835 MarR-type HTH domain BER93_06550 IPR023187 Transcriptional regulator MarR-type, conserved site BER93_06550 IPR036388 BER93_06550 BER93_06550 IPR036390 BER93_06550 BER93_06555 IPR003423 Outer membrane efflux protein BER93_06555 IPR010131 RND efflux system, outer membrane lipoprotein, NodT BER93_06560 IPR032317 BER93_06560 BER93_06560 IPR039562 BER93_06560 BER93_06565 IPR004638 Drug resistance transporter EmrB/QacA subfamily BER93_06565 IPR011701 Major facilitator superfamily BER93_06565 IPR036259 BER93_06565 BER93_06580 IPR000109 Proton-dependent oligopeptide transporter family BER93_06580 IPR005279 Amino acid/peptide transporter family BER93_06580 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site BER93_06580 IPR036259 BER93_06580 BER93_06585 IPR022764 Peptidase S54, rhomboid domain BER93_06585 IPR035952 BER93_06585 BER93_06595 IPR016181 Acyl-CoA N-acyltransferase BER93_06595 IPR031165 BER93_06595 BER93_06605 IPR000835 MarR-type HTH domain BER93_06605 IPR036388 BER93_06605 BER93_06605 IPR036390 BER93_06605 BER93_06615 IPR000889 Glutathione peroxidase BER93_06615 IPR029759 Glutathione peroxidase active site BER93_06615 IPR036249 BER93_06615 BER93_06620 IPR002559 Transposase, IS4-like BER93_06620 IPR025161 Putative transposase IS4/IS5 family BER93_06625 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_06625 IPR008333 Oxidoreductase, FAD-binding domain BER93_06625 IPR017938 Riboflavin synthase-like beta-barrel BER93_06625 IPR039261 BER93_06625 BER93_06630 IPR003439 ABC transporter-like BER93_06630 IPR003593 AAA+ ATPase domain BER93_06630 IPR017871 ABC transporter, conserved site BER93_06630 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_06630 IPR036640 BER93_06630 BER93_06635 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain BER93_06635 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain BER93_06635 IPR011167 Iron-dependent fumarate hydratase BER93_06635 IPR036660 BER93_06635 BER93_06640 IPR001765 Carbonic anhydrase BER93_06640 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site BER93_06640 IPR036874 BER93_06640 BER93_06655 IPR007403 Protein of unknown function DUF456 BER93_06660 IPR002059 Cold-shock protein, DNA-binding BER93_06660 IPR011129 Cold shock protein BER93_06660 IPR012156 Cold shock, CspA BER93_06660 IPR012340 Nucleic acid-binding, OB-fold BER93_06660 IPR019844 Cold-shock conserved site BER93_06665 IPR008816 Glycine zipper 2TM domain BER93_06670 IPR010980 Cytochrome c/b562 BER93_06675 IPR000594 UBA/THIF-type NAD/FAD binding fold BER93_06675 IPR035985 BER93_06675 BER93_06680 IPR001130 TatD family BER93_06680 IPR018228 Deoxyribonuclease, TatD-related, conserved site BER93_06680 IPR032466 BER93_06680 BER93_06690 IPR008816 Glycine zipper 2TM domain BER93_06700 IPR004045 Glutathione S-transferase, N-terminal BER93_06700 IPR004046 Glutathione S-transferase, C-terminal BER93_06700 IPR036249 BER93_06700 BER93_06700 IPR036282 BER93_06700 BER93_06705 IPR001962 Asparagine synthase BER93_06705 IPR006426 Asparagine synthase, glutamine-hydrolyzing BER93_06705 IPR017932 Glutamine amidotransferase type 2 domain BER93_06705 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_06710 IPR005025 NADPH-dependent FMN reductase-like BER93_06710 IPR029039 Flavoprotein-like BER93_06715 IPR007692 DNA helicase, DnaB type BER93_06715 IPR007693 DNA helicase, DnaB-like, N-terminal BER93_06715 IPR007694 DNA helicase, DnaB-like, C-terminal BER93_06715 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BER93_06715 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_06715 IPR036185 BER93_06715 BER93_06720 IPR002081 Cryptochrome/DNA photolyase, class 1 BER93_06720 IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal BER93_06720 IPR006050 DNA photolyase, N-terminal BER93_06720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_06720 IPR018394 Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal BER93_06720 IPR036134 BER93_06720 BER93_06720 IPR036155 BER93_06720 BER93_06725 IPR006664 Outer membrane protein, bacterial BER93_06725 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_06725 IPR006690 Outer membrane protein, OmpA-like, conserved site BER93_06725 IPR036737 BER93_06725 BER93_06725 IPR039567 BER93_06725 BER93_06730 IPR002559 Transposase, IS4-like BER93_06735 IPR001584 Integrase, catalytic core BER93_06735 IPR012337 Ribonuclease H-like domain BER93_06735 IPR025948 HTH-like domain BER93_06735 IPR036397 BER93_06735 BER93_06740 IPR002514 Transposase IS3/IS911family BER93_06740 IPR009057 Homeodomain-like BER93_06760 IPR001387 Cro/C1-type helix-turn-helix domain BER93_06760 IPR010359 Protein of unknown function DUF955 BER93_06760 IPR010982 Lambda repressor-like, DNA-binding domain BER93_06760 IPR018653 Domain of unknown function DUF2083,transcriptional regulator BER93_06760 IPR026281 HTH type transcriptional regulator Rv0465c/Mt0481 BER93_06765 IPR010061 Methylmalonate-semialdehyde dehydrogenase BER93_06765 IPR015590 Aldehyde dehydrogenase domain BER93_06765 IPR016160 Aldehyde dehydrogenase, cysteine active site BER93_06765 IPR016161 Aldehyde/histidinol dehydrogenase BER93_06765 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_06765 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_06770 IPR006089 Acyl-CoA dehydrogenase, conserved site BER93_06770 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_06770 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_06770 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain BER93_06770 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_06770 IPR036250 BER93_06770 BER93_06770 IPR037069 BER93_06770 BER93_06775 IPR001753 Crotonase superfamily BER93_06775 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site BER93_06775 IPR029045 ClpP/crotonase-like domain BER93_06780 IPR029045 ClpP/crotonase-like domain BER93_06780 IPR032259 BER93_06780 BER93_06785 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site BER93_06785 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding BER93_06785 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_06785 IPR011548 3-hydroxyisobutyrate dehydrogenase BER93_06785 IPR013328 Dehydrogenase, multihelical BER93_06785 IPR015815 Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type BER93_06785 IPR029154 NADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain BER93_06785 IPR036291 BER93_06785 BER93_06790 IPR002524 Cation efflux protein BER93_06790 IPR027469 Cation efflux protein transmembrane domain BER93_06790 IPR036837 BER93_06790 BER93_06795 IPR001753 Crotonase superfamily BER93_06795 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal BER93_06795 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding BER93_06795 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_06795 IPR029045 ClpP/crotonase-like domain BER93_06795 IPR036291 BER93_06795 BER93_06800 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site BER93_06800 IPR007627 RNA polymerase sigma-70 region 2 BER93_06800 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_06800 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_06800 IPR013325 RNA polymerase sigma factor, region 2 BER93_06800 IPR014284 RNA polymerase sigma-70 like domain BER93_06800 IPR014286 RNA polymerase sigma-70 RpoE type BER93_06800 IPR036388 BER93_06800 BER93_06805 IPR005572 Anti sigma-E protein RseA, N-terminal BER93_06805 IPR036147 BER93_06805 BER93_06810 IPR001478 PDZ domain BER93_06810 IPR001940 Peptidase S1C BER93_06810 IPR009003 Trypsin-like cysteine/serine peptidase domain BER93_06810 IPR011782 Peptidase S1C, Do BER93_06810 IPR036034 BER93_06810 BER93_06815 IPR002559 Transposase, IS4-like BER93_06815 IPR008490 Transposase InsH, N-terminal BER93_06820 IPR002559 Transposase, IS4-like BER93_06820 IPR008490 Transposase InsH, N-terminal BER93_06825 IPR002559 Transposase, IS4-like BER93_06830 IPR002514 Transposase IS3/IS911family BER93_06830 IPR009057 Homeodomain-like BER93_06835 IPR001584 Integrase, catalytic core BER93_06835 IPR012337 Ribonuclease H-like domain BER93_06835 IPR025948 HTH-like domain BER93_06835 IPR036397 BER93_06835 BER93_06840 IPR025246 Transposase IS30-like HTH domain BER93_06845 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB BER93_06850 IPR025178 Domain of unknown function DUF4105 BER93_06855 IPR000644 CBS domain BER93_06855 IPR005170 Transporter-associated domain BER93_06855 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 BER93_06855 IPR036318 BER93_06855 BER93_06865 IPR002036 Endoribonuclease YbeY BER93_06865 IPR020549 Endoribonuclease YbeY, conserved site BER93_06865 IPR023091 Metalloprotease catalytic domain, predicted BER93_06870 IPR003714 PhoH-like protein BER93_06870 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_06875 IPR002792 TRAM domain BER93_06875 IPR005839 Methylthiotransferase BER93_06875 IPR006463 tRNA-i(6)A37 modification enzyme MiaB BER93_06875 IPR006638 Elongator protein 3/MiaB/NifB BER93_06875 IPR007197 Radical SAM BER93_06875 IPR013848 Methylthiotransferase, N-terminal BER93_06875 IPR020612 Methylthiotransferase, conserved site BER93_06875 IPR023404 Radical SAM, alpha/beta horseshoe BER93_06875 IPR038135 BER93_06875 BER93_06885 IPR000189 Prokaryotic transglycosylase, active site BER93_06885 IPR008258 Lytic transglycosylase-like SLT domain BER93_06885 IPR023346 Lysozyme-like domain BER93_06890 IPR005805 Rieske iron-sulphur protein, C-terminal BER93_06890 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit BER93_06890 IPR017941 Rieske [2Fe-2S] iron-sulphur domain BER93_06890 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal BER93_06890 IPR036922 BER93_06890 BER93_06895 IPR005797 Cytochrome b/b6, N-terminal BER93_06895 IPR005798 Cytochrome b/b6, C-terminal BER93_06895 IPR016174 Di-haem cytochrome, transmembrane BER93_06895 IPR027387 Cytochrome b/b6-like domain BER93_06895 IPR030689 BER93_06895 BER93_06895 IPR036150 BER93_06895 BER93_06900 IPR002326 Cytochrome c1 BER93_06900 IPR036909 BER93_06900 BER93_06905 IPR004045 Glutathione S-transferase, N-terminal BER93_06905 IPR004046 Glutathione S-transferase, C-terminal BER93_06905 IPR036249 BER93_06905 BER93_06905 IPR036282 BER93_06905 BER93_06910 IPR007481 Stringent starvation protein B BER93_06910 IPR036760 BER93_06910 BER93_06915 IPR021732 Protein of unknown function DUF3301 BER93_06920 IPR001650 Helicase, C-terminal BER93_06920 IPR011545 DEAD/DEAH box helicase domain BER93_06920 IPR013701 DEAD/H associated BER93_06920 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_06920 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_06925 IPR003180 Methylpurine-DNA glycosylase (MPG) BER93_06925 IPR011034 Formyl transferase, C-terminal-like BER93_06925 IPR036995 BER93_06925 BER93_06940 IPR001801 Histone-like protein H-NS BER93_06940 IPR027444 Histone-like protein H-NS, C-terminal domain BER93_06945 IPR022037 Protein of unknown function DUF3606 BER93_06950 IPR002559 Transposase, IS4-like BER93_06955 IPR002121 HRDC domain BER93_06955 IPR002562 3'-5' exonuclease domain BER93_06955 IPR006292 Ribonuclease D BER93_06955 IPR010997 HRDC-like BER93_06955 IPR012337 Ribonuclease H-like domain BER93_06955 IPR036397 BER93_06955 BER93_06960 IPR005532 Formylglycine-generating sulphatase enzyme domain BER93_06960 IPR016187 C-type lectin fold BER93_06975 IPR000640 Translation elongation factor EFG, V domain BER93_06975 IPR000795 Elongation factor, GTP-binding domain BER93_06975 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 BER93_06975 IPR005225 Small GTP-binding protein domain BER93_06975 IPR006297 Elongation factor 4 BER93_06975 IPR009000 Translation protein, beta-barrel domain BER93_06975 IPR013842 GTP-binding protein LepA, C-terminal BER93_06975 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_06975 IPR031157 BER93_06975 BER93_06975 IPR035647 BER93_06975 BER93_06975 IPR038363 BER93_06975 BER93_06980 IPR000223 Peptidase S26A, signal peptidase I BER93_06980 IPR015927 Peptidase S24/S26A/S26B/S26C BER93_06980 IPR019757 Peptidase S26A, signal peptidase I, lysine active site BER93_06980 IPR019758 Peptidase S26A, signal peptidase I, conserved site BER93_06980 IPR036286 BER93_06980 BER93_06985 IPR032314 BER93_06985 BER93_06990 IPR000999 Ribonuclease III domain BER93_06990 IPR011907 Ribonuclease III BER93_06990 IPR014720 Double-stranded RNA-binding domain BER93_06990 IPR036389 BER93_06990 BER93_06995 IPR004044 K Homology domain, type 2 BER93_06995 IPR005225 Small GTP-binding protein domain BER93_06995 IPR005662 GTP-binding protein Era BER93_06995 IPR006073 GTP binding domain BER93_06995 IPR009019 K homology domain, prokaryotic type BER93_06995 IPR015946 K homology domain-like, alpha/beta BER93_06995 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07000 IPR003717 Recombination protein O, RecO BER93_07000 IPR012340 Nucleic acid-binding, OB-fold BER93_07000 IPR022572 DNA replication/recombination mediator RecO, N-terminal BER93_07000 IPR037278 BER93_07000 BER93_07005 IPR001789 Signal transduction response regulator, receiver domain BER93_07005 IPR011006 CheY-like superfamily BER93_07005 IPR036641 BER93_07005 BER93_07010 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD BER93_07010 IPR010280 (Uracil-5)-methyltransferase family BER93_07010 IPR012340 Nucleic acid-binding, OB-fold BER93_07010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_07010 IPR030390 BER93_07010 BER93_07010 IPR030391 BER93_07010 BER93_07015 IPR012042 Uncharacterised conserved protein UCP016487, CYTH-type BER93_07015 IPR023577 CYTH-like domain BER93_07015 IPR033469 BER93_07015 BER93_07020 IPR002937 Amine oxidase BER93_07020 IPR036188 BER93_07020 BER93_07025 IPR007357 Deoxyribodipyrimidine photolyase-related protein BER93_07025 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_07025 IPR036134 BER93_07025 BER93_07030 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_07030 IPR017853 Glycoside hydrolase, superfamily BER93_07030 IPR019800 Glycoside hydrolase, family 3, active site BER93_07030 IPR022956 Beta-hexosaminidase, bacterial BER93_07030 IPR036962 BER93_07030 BER93_07035 IPR000836 Phosphoribosyltransferase domain BER93_07035 IPR029057 Phosphoribosyltransferase-like BER93_07040 IPR000845 Nucleoside phosphorylase domain BER93_07040 IPR010044 Methylthioadenosine phosphorylase (MTAP) BER93_07040 IPR018099 Purine phosphorylase, family 2, conserved site BER93_07040 IPR035994 BER93_07040 BER93_07045 IPR002059 Cold-shock protein, DNA-binding BER93_07045 IPR011129 Cold shock protein BER93_07045 IPR012156 Cold shock, CspA BER93_07045 IPR012340 Nucleic acid-binding, OB-fold BER93_07050 IPR004843 Calcineurin-like phosphoesterase domain, apaH type BER93_07050 IPR024173 Phosphoesterase, MJ0037 BER93_07050 IPR026336 Metallophosphoesterase, DNA ligase-associated BER93_07050 IPR029052 Metallo-dependent phosphatase-like BER93_07055 IPR001650 Helicase, C-terminal BER93_07055 IPR011545 DEAD/DEAH box helicase domain BER93_07055 IPR013701 DEAD/H associated BER93_07055 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_07055 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted BER93_07055 IPR026362 DEXH box helicase, DNA ligase-associated BER93_07055 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07060 IPR012308 DNA ligase, ATP-dependent, N-terminal BER93_07060 IPR012309 DNA ligase, ATP-dependent, C-terminal BER93_07060 IPR012310 DNA ligase, ATP-dependent, central BER93_07060 IPR012340 Nucleic acid-binding, OB-fold BER93_07060 IPR026333 ATP-dependent DNA ligase, PP_1105 family BER93_07060 IPR036599 BER93_07060 BER93_07070 IPR026360 Putative exonuclease, DNA ligase-associated BER93_07070 IPR036866 BER93_07070 BER93_07085 IPR007607 Protein of unknown function DUF583 BER93_07100 IPR002155 Thiolase BER93_07100 IPR016039 Thiolase-like BER93_07100 IPR020610 Thiolase, active site BER93_07100 IPR020615 Thiolase, acyl-enzyme intermediate active site BER93_07100 IPR020616 Thiolase, N-terminal BER93_07100 IPR020617 Thiolase, C-terminal BER93_07105 IPR002559 Transposase, IS4-like BER93_07105 IPR008490 Transposase InsH, N-terminal BER93_07110 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase BER93_07110 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal BER93_07110 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain BER93_07110 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal BER93_07110 IPR033524 BER93_07110 BER93_07110 IPR036291 BER93_07110 BER93_07115 IPR006597 Sel1-like BER93_07115 IPR011990 Tetratricopeptide-like helical domain BER93_07120 IPR002725 Protein of unknown function DUF45 BER93_07130 IPR009760 Protein of unknown function DUF1328 BER93_07135 IPR021250 Protein of unknown function DUF2789 BER93_07140 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07140 IPR033186 BER93_07140 BER93_07145 IPR008258 Lytic transglycosylase-like SLT domain BER93_07145 IPR018392 LysM domain BER93_07145 IPR023346 Lysozyme-like domain BER93_07145 IPR036779 BER93_07145 BER93_07150 IPR020011 Motility protein FimV, C-terminal BER93_07150 IPR020012 Motility protein FimV, N-terminal BER93_07150 IPR038440 BER93_07150 BER93_07155 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER93_07160 IPR001406 Pseudouridine synthase I, TruA BER93_07160 IPR020095 Pseudouridine synthase I, TruA, C-terminal BER93_07160 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain BER93_07160 IPR020103 Pseudouridine synthase, catalytic domain BER93_07165 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain BER93_07165 IPR011060 Ribulose-phosphate binding barrel BER93_07165 IPR013785 Aldolase-type TIM barrel BER93_07180 IPR002559 Transposase, IS4-like BER93_07180 IPR008490 Transposase InsH, N-terminal BER93_07190 IPR000847 Transcription regulator HTH, LysR BER93_07190 IPR005119 LysR, substrate-binding BER93_07190 IPR036388 BER93_07190 BER93_07190 IPR036390 BER93_07190 BER93_07195 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_07195 IPR006653 Tryptophan synthase, beta chain, conserved site BER93_07195 IPR006654 Tryptophan synthase, beta chain BER93_07195 IPR023026 Tryptophan synthase beta chain/beta chain-like BER93_07195 IPR036052 BER93_07195 BER93_07200 IPR002028 Tryptophan synthase, alpha chain BER93_07200 IPR011060 Ribulose-phosphate binding barrel BER93_07200 IPR013785 Aldolase-type TIM barrel BER93_07200 IPR018204 Tryptophan synthase, alpha chain, active site BER93_07205 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit BER93_07205 IPR029045 ClpP/crotonase-like domain BER93_07205 IPR034733 BER93_07205 BER93_07210 IPR005841 Alpha-D-phosphohexomutase superfamily BER93_07210 IPR005843 Alpha-D-phosphohexomutase, C-terminal BER93_07210 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I BER93_07210 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II BER93_07210 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III BER93_07210 IPR006352 Phosphoglucosamine mutase BER93_07210 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III BER93_07210 IPR016066 Alpha-D-phosphohexomutase, conserved site BER93_07210 IPR036900 BER93_07210 BER93_07215 IPR005123 Oxoglutarate/iron-dependent dioxygenase BER93_07215 IPR026992 Non-haem dioxygenase N-terminal domain BER93_07215 IPR027443 Isopenicillin N synthase-like BER93_07220 IPR008969 Carboxypeptidase-like, regulatory domain BER93_07220 IPR008972 Cupredoxin BER93_07225 IPR000160 GGDEF domain BER93_07225 IPR001633 EAL domain BER93_07225 IPR003660 HAMP linker domain BER93_07225 IPR029150 Sensory domain of two-component sensor kinase BER93_07225 IPR029787 Nucleotide cyclase BER93_07225 IPR035919 BER93_07225 BER93_07230 IPR021393 Protein of unknown function DUF3034 BER93_07235 IPR001486 Globin, truncated bacterial-like BER93_07235 IPR009050 Globin-like BER93_07235 IPR012292 Globin, structural domain BER93_07235 IPR016339 Globin, truncated bacterial-like, HbN/cyanoglobin BER93_07240 IPR002347 Glucose/ribitol dehydrogenase BER93_07240 IPR036291 BER93_07240 BER93_07245 IPR000652 Triosephosphate isomerase BER93_07245 IPR013785 Aldolase-type TIM barrel BER93_07245 IPR020861 Triosephosphate isomerase, active site BER93_07245 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic BER93_07245 IPR035990 BER93_07245 BER93_07250 IPR004692 Preprotein translocase SecG subunit BER93_07260 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 BER93_07260 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid BER93_07260 IPR038430 BER93_07260 BER93_07265 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit BER93_07265 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit BER93_07270 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit BER93_07270 IPR010218 NADH dehydrogenase, subunit C BER93_07270 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site BER93_07270 IPR037232 BER93_07270 BER93_07275 IPR001135 NADH-quinone oxidoreductase, subunit D BER93_07275 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site BER93_07275 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H BER93_07275 IPR029014 NiFe hydrogenase-like BER93_07275 IPR038290 BER93_07275 BER93_07280 IPR002023 NADH-quinone oxidoreductase subunit E-like BER93_07280 IPR036249 BER93_07280 BER93_07285 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site BER93_07285 IPR011537 NADH ubiquinone oxidoreductase, F subunit BER93_07285 IPR011538 NADH:ubiquinone oxidoreductase, 51kDa subunit BER93_07285 IPR019554 Soluble ligand binding domain BER93_07285 IPR019575 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding BER93_07285 IPR037207 BER93_07285 BER93_07285 IPR037225 BER93_07285 BER93_07290 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site BER93_07290 IPR006656 Molybdopterin oxidoreductase BER93_07290 IPR006657 Molydopterin dinucleotide-binding domain BER93_07290 IPR009010 Aspartate decarboxylase-like domain BER93_07290 IPR010228 NADH:ubiquinone oxidoreductase, subunit G BER93_07290 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding BER93_07290 IPR036010 BER93_07290 BER93_07295 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H BER93_07295 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site BER93_07300 IPR010226 NADH-quinone oxidoreductase, chain I BER93_07300 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_07300 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_07305 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 BER93_07310 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K BER93_07310 IPR039428 BER93_07310 BER93_07315 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal BER93_07315 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase BER93_07315 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 BER93_07315 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup BER93_07320 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase BER93_07320 IPR003918 NADH:ubiquinone oxidoreductase BER93_07320 IPR010227 NADH-quinone oxidoreductase, chain M/4 BER93_07325 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase BER93_07325 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 BER93_07335 IPR003728 Ribosome maturation factor RimP BER93_07335 IPR028989 Ribosome maturation factor RimP, N-terminal BER93_07335 IPR028998 Ribosome maturation factor RimP, C-terminal BER93_07335 IPR035956 BER93_07335 BER93_07335 IPR036847 BER93_07335 BER93_07340 IPR003029 Ribosomal protein S1, RNA-binding domain BER93_07340 IPR004087 K Homology domain BER93_07340 IPR009019 K homology domain, prokaryotic type BER93_07340 IPR010213 Transcription termination factor NusA BER93_07340 IPR010214 Transcription termination factor NusA, C-terminal duplication BER93_07340 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical BER93_07340 IPR012340 Nucleic acid-binding, OB-fold BER93_07340 IPR013735 Transcription factor NusA, N-terminal BER93_07340 IPR015946 K homology domain-like, alpha/beta BER93_07340 IPR022967 RNA-binding domain, S1 BER93_07340 IPR025249 KH domain, NusA-like BER93_07340 IPR030842 BER93_07340 BER93_07340 IPR036555 BER93_07340 BER93_07345 IPR000178 Translation initiation factor aIF-2, bacterial-like BER93_07345 IPR000795 Elongation factor, GTP-binding domain BER93_07345 IPR005225 Small GTP-binding protein domain BER93_07345 IPR006847 Translation initiation factor IF-2, N-terminal BER93_07345 IPR009000 Translation protein, beta-barrel domain BER93_07345 IPR009061 DNA binding domain, putative BER93_07345 IPR013575 Initiation factor 2 associated domain, bacterial BER93_07345 IPR023115 Translation initiation factor IF- 2, domain 3 BER93_07345 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07345 IPR036925 BER93_07345 BER93_07350 IPR000238 Ribosome-binding factor A BER93_07350 IPR015946 K homology domain-like, alpha/beta BER93_07350 IPR020053 Ribosome-binding factor A, conserved site BER93_07350 IPR023799 Ribosome-binding factor A domain BER93_07355 IPR002501 Pseudouridine synthase II BER93_07355 IPR014780 tRNA pseudouridine synthase II, TruB BER93_07355 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal BER93_07355 IPR015947 PUA-like domain BER93_07355 IPR020103 Pseudouridine synthase, catalytic domain BER93_07355 IPR032819 BER93_07355 BER93_07360 IPR000589 Ribosomal protein S15 BER93_07360 IPR005290 Ribosomal protein S15, bacterial-type BER93_07360 IPR009068 S15/NS1, RNA-binding BER93_07365 IPR001247 Exoribonuclease, phosphorolytic domain 1 BER93_07365 IPR003029 Ribosomal protein S1, RNA-binding domain BER93_07365 IPR004087 K Homology domain BER93_07365 IPR004088 K Homology domain, type 1 BER93_07365 IPR012162 Polyribonucleotide nucleotidyltransferase BER93_07365 IPR012340 Nucleic acid-binding, OB-fold BER93_07365 IPR015847 Exoribonuclease, phosphorolytic domain 2 BER93_07365 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain BER93_07365 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_07365 IPR022967 RNA-binding domain, S1 BER93_07365 IPR027408 PNPase/RNase PH domain BER93_07365 IPR036345 BER93_07365 BER93_07365 IPR036456 BER93_07365 BER93_07365 IPR036612 BER93_07365 BER93_07370 IPR025161 Putative transposase IS4/IS5 family BER93_07375 IPR002559 Transposase, IS4-like BER93_07385 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal BER93_07385 IPR004393 Nicotinate-nucleotide pyrophosphorylase BER93_07385 IPR013785 Aldolase-type TIM barrel BER93_07385 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal BER93_07385 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD BER93_07385 IPR036068 BER93_07385 BER93_07385 IPR037128 BER93_07385 BER93_07390 IPR005651 Uncharacterised protein family UPF0434/Trm112 BER93_07395 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain BER93_07395 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE BER93_07395 IPR033747 BER93_07395 BER93_07395 IPR035893 BER93_07395 BER93_07400 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BER93_07400 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit BER93_07400 IPR011054 Rudiment single hybrid motif BER93_07400 IPR013815 ATP-grasp fold, subdomain 1 BER93_07400 IPR016185 Pre-ATP-grasp domain BER93_07405 IPR001189 Manganese/iron superoxide dismutase BER93_07405 IPR019831 Manganese/iron superoxide dismutase, N-terminal BER93_07405 IPR019832 Manganese/iron superoxide dismutase, C-terminal BER93_07405 IPR019833 Manganese/iron superoxide dismutase, binding site BER93_07405 IPR036314 BER93_07405 BER93_07405 IPR036324 BER93_07405 BER93_07410 IPR002109 Glutaredoxin BER93_07410 IPR004480 Monothiol glutaredoxin-related BER93_07410 IPR014434 Monothiol glutaredoxin BER93_07410 IPR036249 BER93_07410 BER93_07415 IPR002347 Glucose/ribitol dehydrogenase BER93_07415 IPR036291 BER93_07415 BER93_07420 IPR002771 Multiple antibiotic resistance (MarC)-related BER93_07425 IPR008969 Carboxypeptidase-like, regulatory domain BER93_07425 IPR012910 TonB-dependent receptor, plug BER93_07425 IPR036942 BER93_07425 BER93_07430 IPR021826 Protein of unknown function DUF3412 BER93_07430 IPR027820 Domain of unknown function DUF4478 BER93_07430 IPR031100 BER93_07430 BER93_07430 IPR037153 BER93_07430 BER93_07440 IPR010559 Signal transduction histidine kinase, internal region BER93_07440 IPR036890 BER93_07440 BER93_07445 IPR012902 Prokaryotic N-terminal methylation site BER93_07445 IPR032092 BER93_07445 BER93_07450 IPR008707 PilC beta-propeller domain BER93_07450 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily BER93_07450 IPR015943 WD40/YVTN repeat-like-containing domain BER93_07455 IPR002559 Transposase, IS4-like BER93_07455 IPR008490 Transposase InsH, N-terminal BER93_07460 IPR001789 Signal transduction response regulator, receiver domain BER93_07460 IPR003607 HD/PDEase domain BER93_07460 IPR011006 CheY-like superfamily BER93_07465 IPR000014 PAS domain BER93_07465 IPR001610 PAC motif BER93_07465 IPR001789 Signal transduction response regulator, receiver domain BER93_07465 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_07465 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_07465 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_07465 IPR006189 CHASE BER93_07465 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_07465 IPR011006 CheY-like superfamily BER93_07465 IPR035965 BER93_07465 BER93_07465 IPR036097 BER93_07465 BER93_07465 IPR036641 BER93_07465 BER93_07465 IPR036890 BER93_07465 BER93_07470 IPR007383 Protein of unknown function DUF445 BER93_07475 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07485 IPR011701 Major facilitator superfamily BER93_07485 IPR036259 BER93_07485 BER93_07490 IPR003786 Protein FdhD BER93_07490 IPR016193 Cytidine deaminase-like BER93_07495 IPR006656 Molybdopterin oxidoreductase BER93_07495 IPR006657 Molydopterin dinucleotide-binding domain BER93_07495 IPR009010 Aspartate decarboxylase-like domain BER93_07495 IPR010046 Oxidoreductase alpha (molybdopterin) subunit BER93_07500 IPR036388 BER93_07500 BER93_07500 IPR036390 BER93_07500 BER93_07510 IPR002514 Transposase IS3/IS911family BER93_07510 IPR009057 Homeodomain-like BER93_07515 IPR001584 Integrase, catalytic core BER93_07515 IPR012337 Ribonuclease H-like domain BER93_07515 IPR025948 HTH-like domain BER93_07515 IPR036397 BER93_07515 BER93_07525 IPR006076 FAD dependent oxidoreductase BER93_07525 IPR036188 BER93_07525 BER93_07530 IPR008146 Glutamine synthetase, catalytic domain BER93_07530 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_07530 IPR027303 Glutamine synthetase, glycine-rich site BER93_07530 IPR036651 BER93_07530 BER93_07535 IPR008146 Glutamine synthetase, catalytic domain BER93_07535 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_07535 IPR027303 Glutamine synthetase, glycine-rich site BER93_07535 IPR036651 BER93_07535 BER93_07540 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein BER93_07540 IPR006059 Bacterial extracellular solute-binding, family 1 BER93_07545 IPR003997 RTX secretion protein D, Gram-negative bacteria BER93_07545 IPR032317 BER93_07545 BER93_07550 IPR004638 Drug resistance transporter EmrB/QacA subfamily BER93_07550 IPR011701 Major facilitator superfamily BER93_07550 IPR036259 BER93_07550 BER93_07555 IPR003423 Outer membrane efflux protein BER93_07555 IPR010131 RND efflux system, outer membrane lipoprotein, NodT BER93_07560 IPR003439 ABC transporter-like BER93_07560 IPR003593 AAA+ ATPase domain BER93_07560 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit BER93_07560 IPR008995 Molybdate/tungstate binding, C-terminal BER93_07560 IPR013611 Transport-associated OB, type 2 BER93_07560 IPR017871 ABC transporter, conserved site BER93_07560 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07565 IPR000515 MetI-like domain BER93_07565 IPR035906 BER93_07565 BER93_07570 IPR000515 MetI-like domain BER93_07570 IPR035906 BER93_07570 BER93_07575 IPR015590 Aldehyde dehydrogenase domain BER93_07575 IPR016160 Aldehyde dehydrogenase, cysteine active site BER93_07575 IPR016161 Aldehyde/histidinol dehydrogenase BER93_07575 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_07575 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_07585 IPR000014 PAS domain BER93_07585 IPR001610 PAC motif BER93_07585 IPR011102 Signal transduction histidine kinase, HWE region BER93_07585 IPR013655 PAS fold-3 BER93_07585 IPR035965 BER93_07585 BER93_07585 IPR036890 BER93_07585 BER93_07595 IPR001036 Acriflavin resistance protein BER93_07595 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 BER93_07595 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_07600 IPR006143 RND efflux pump, membrane fusion protein BER93_07600 IPR032317 BER93_07600 BER93_07605 IPR001647 DNA-binding HTH domain, TetR-type BER93_07605 IPR009057 Homeodomain-like BER93_07605 IPR036271 BER93_07605 BER93_07610 IPR007780 Bacterial NAD-glutamate dehydrogenase BER93_07610 IPR024727 Bacterial NAD-glutamate dehydrogenase, N-terminal BER93_07610 IPR028971 NAD-glutamate dehydrogenase BER93_07610 IPR036291 BER93_07610 BER93_07635 IPR008718 NolX BER93_07655 IPR010985 Ribbon-helix-helix BER93_07655 IPR022789 Uncharacterised protein family UPF0156/MetJ /Arc repressor BER93_07655 IPR038296 BER93_07655 BER93_07665 IPR006881 Plasmid encoded RepA protein BER93_07670 IPR002559 Transposase, IS4-like BER93_07690 IPR002559 Transposase, IS4-like BER93_07690 IPR008490 Transposase InsH, N-terminal BER93_07695 IPR002514 Transposase IS3/IS911family BER93_07695 IPR009057 Homeodomain-like BER93_07705 IPR001584 Integrase, catalytic core BER93_07705 IPR012337 Ribonuclease H-like domain BER93_07705 IPR036397 BER93_07705 BER93_07715 IPR001650 Helicase, C-terminal BER93_07715 IPR001943 UVR domain BER93_07715 IPR004807 UvrABC system, subunit B BER93_07715 IPR006935 Helicase/UvrB domain BER93_07715 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_07715 IPR024759 UvrB, YAD/RRR-motif-containing domain BER93_07715 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07715 IPR036876 BER93_07715 BER93_07730 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal BER93_07735 IPR007430 Bacterial virulence protein VirB8 BER93_07735 IPR032710 BER93_07735 BER93_07745 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI BER93_07750 IPR001482 Type II secretion system protein E BER93_07750 IPR014155 Type IV secretion system protein VirB11 BER93_07750 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07755 IPR008258 Lytic transglycosylase-like SLT domain BER93_07755 IPR023346 Lysozyme-like domain BER93_07760 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 BER93_07765 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB BER93_07770 IPR003593 AAA+ ATPase domain BER93_07770 IPR004346 CagE, TrbE, VirB component of type IV transporter system BER93_07770 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain BER93_07770 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07780 IPR007688 Conjugal transfer, TrbL/VirB6 BER93_07790 IPR002559 Transposase, IS4-like BER93_07790 IPR025161 Putative transposase IS4/IS5 family BER93_07805 IPR002477 Peptidoglycan binding-like BER93_07805 IPR036365 BER93_07805 BER93_07805 IPR036366 BER93_07805 BER93_07820 IPR007688 Conjugal transfer, TrbL/VirB6 BER93_07830 IPR002477 Peptidoglycan binding-like BER93_07830 IPR036365 BER93_07830 BER93_07830 IPR036366 BER93_07830 BER93_07835 IPR003593 AAA+ ATPase domain BER93_07835 IPR004346 CagE, TrbE, VirB component of type IV transporter system BER93_07835 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain BER93_07835 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07860 IPR007688 Conjugal transfer, TrbL/VirB6 BER93_07865 IPR009739 Protein of unknown function DUF1311 BER93_07870 IPR002477 Peptidoglycan binding-like BER93_07870 IPR036365 BER93_07870 BER93_07870 IPR036366 BER93_07870 BER93_07875 IPR002559 Transposase, IS4-like BER93_07875 IPR008490 Transposase InsH, N-terminal BER93_07885 IPR010359 Protein of unknown function DUF955 BER93_07900 IPR002104 Integrase, catalytic BER93_07900 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_07900 IPR013762 Integrase-like, catalytic core BER93_07920 IPR001387 Cro/C1-type helix-turn-helix domain BER93_07920 IPR010982 Lambda repressor-like, DNA-binding domain BER93_07940 IPR025209 Domain of unknown function DUF4209 BER93_07945 IPR002104 Integrase, catalytic BER93_07945 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_07945 IPR013762 Integrase-like, catalytic core BER93_07960 IPR000037 SsrA-binding protein BER93_07960 IPR020081 SsrA-binding protein, conserved site BER93_07960 IPR023620 Small protein B BER93_07965 IPR005031 Streptomyces cyclase/dehydrase BER93_07965 IPR023393 START-like domain BER93_07970 IPR005346 RnfH protein BER93_07970 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER93_07970 IPR037021 BER93_07970 BER93_07975 IPR007450 Lipoprotein SmpA/OmlA BER93_07975 IPR026592 Outer membrane protein assembly factor BamE BER93_07975 IPR037873 BER93_07975 BER93_07980 IPR002481 Ferric-uptake regulator BER93_07980 IPR036388 BER93_07980 BER93_07980 IPR036390 BER93_07980 BER93_07985 IPR003395 RecF/RecN/SMC, N-terminal BER93_07985 IPR004604 DNA recombination/repair protein RecN BER93_07985 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_07990 IPR002571 Heat-inducible transcription repressor HrcA BER93_07990 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain BER93_07990 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal BER93_07990 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain BER93_07990 IPR029016 GAF domain-like BER93_07990 IPR036388 BER93_07990 BER93_07990 IPR036390 BER93_07990 BER93_07995 IPR000740 GrpE nucleotide exchange factor BER93_07995 IPR009012 GrpE nucleotide exchange factor, head BER93_07995 IPR013805 GrpE nucleotide exchange factor, coiled-coil BER93_08000 IPR012725 Chaperone DnaK BER93_08000 IPR013126 Heat shock protein 70 family BER93_08000 IPR018181 Heat shock protein 70, conserved site BER93_08000 IPR029047 Heat shock protein 70kD, peptide-binding domain BER93_08000 IPR029048 Heat shock protein 70kD, C-terminal domain BER93_08005 IPR001305 Heat shock protein DnaJ, cysteine-rich domain BER93_08005 IPR001623 DnaJ domain BER93_08005 IPR002939 Chaperone DnaJ, C-terminal BER93_08005 IPR008971 HSP40/DnaJ peptide-binding BER93_08005 IPR012724 Chaperone DnaJ BER93_08005 IPR036410 BER93_08005 BER93_08005 IPR036869 BER93_08005 BER93_08010 IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase BER93_08010 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase BER93_08010 IPR029056 Ribokinase-like BER93_08015 IPR002912 ACT domain BER93_08015 IPR003099 Prephenate dehydrogenase BER93_08015 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_08015 IPR036291 BER93_08015 BER93_08025 IPR003423 Outer membrane efflux protein BER93_08030 IPR039562 BER93_08030 BER93_08035 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08035 IPR036640 BER93_08035 BER93_08050 IPR003439 ABC transporter-like BER93_08050 IPR003593 AAA+ ATPase domain BER93_08050 IPR011527 ABC transporter type 1, transmembrane domain BER93_08050 IPR011918 ABC transporter, ATP-binding/permease protein BER93_08050 IPR017871 ABC transporter, conserved site BER93_08050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08050 IPR036640 BER93_08050 BER93_08055 IPR001498 Impact, N-terminal BER93_08055 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal BER93_08055 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_08055 IPR035647 BER93_08055 BER93_08055 IPR036956 BER93_08055 BER93_08060 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG BER93_08060 IPR031100 BER93_08060 BER93_08065 IPR001100 BER93_08065 BER93_08065 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_08065 IPR006258 Dihydrolipoamide dehydrogenase BER93_08065 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site BER93_08065 IPR016156 FAD/NAD-linked reductase, dimerisation domain BER93_08065 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_08065 IPR036188 BER93_08065 BER93_08070 IPR000089 Biotin/lipoyl attachment BER93_08070 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain BER93_08070 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_08070 IPR004167 E3 binding BER93_08070 IPR006255 Dihydrolipoamide succinyltransferase BER93_08070 IPR011053 Single hybrid motif BER93_08070 IPR023213 Chloramphenicol acetyltransferase-like domain BER93_08070 IPR036625 BER93_08070 BER93_08075 IPR001017 Dehydrogenase, E1 component BER93_08075 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_08075 IPR011603 2-oxoglutarate dehydrogenase E1 component BER93_08075 IPR029061 Thiamin diphosphate-binding fold BER93_08075 IPR031717 BER93_08075 BER93_08075 IPR032106 BER93_08075 BER93_08080 IPR000182 GNAT domain BER93_08080 IPR016181 Acyl-CoA N-acyltransferase BER93_08085 IPR003347 JmjC domain BER93_08090 IPR000362 Fumarate lyase family BER93_08090 IPR004769 Adenylosuccinate lyase BER93_08090 IPR008948 L-Aspartase-like BER93_08090 IPR013539 Adenylosuccinate lyase PurB, C-terminal BER93_08090 IPR020557 Fumarate lyase, conserved site BER93_08090 IPR022761 Fumarate lyase, N-terminal BER93_08090 IPR024083 Fumarase/histidase, N-terminal BER93_08095 IPR000362 Fumarate lyase family BER93_08095 IPR005677 Fumarate hydratase, class II BER93_08095 IPR008948 L-Aspartase-like BER93_08095 IPR018951 Fumarase C, C-terminal BER93_08095 IPR020557 Fumarate lyase, conserved site BER93_08095 IPR022761 Fumarate lyase, N-terminal BER93_08095 IPR024083 Fumarase/histidase, N-terminal BER93_08105 IPR002514 Transposase IS3/IS911family BER93_08105 IPR009057 Homeodomain-like BER93_08115 IPR001584 Integrase, catalytic core BER93_08115 IPR012337 Ribonuclease H-like domain BER93_08115 IPR036397 BER93_08115 BER93_08120 IPR002559 Transposase, IS4-like BER93_08130 IPR025161 Putative transposase IS4/IS5 family BER93_08145 IPR003439 ABC transporter-like BER93_08145 IPR003593 AAA+ ATPase domain BER93_08145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08150 IPR000524 Transcription regulator HTH, GntR BER93_08150 IPR036388 BER93_08150 BER93_08150 IPR036390 BER93_08150 BER93_08160 IPR000889 Glutathione peroxidase BER93_08160 IPR029759 Glutathione peroxidase active site BER93_08160 IPR036249 BER93_08160 BER93_08165 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal BER93_08165 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain BER93_08165 IPR036944 BER93_08165 BER93_08170 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal BER93_08170 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_08170 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation BER93_08170 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal BER93_08170 IPR017476 UDP-glucose/GDP-mannose dehydrogenase BER93_08170 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type BER93_08170 IPR036220 BER93_08170 BER93_08170 IPR036291 BER93_08170 BER93_08175 IPR007236 SlyX BER93_08180 IPR018636 Protein of unknown function DUF2058 BER93_08185 IPR025737 MetA-pathway of phenol degradation, putative BER93_08190 IPR000843 Transcription regulator HTH, LacI BER93_08190 IPR010982 Lambda repressor-like, DNA-binding domain BER93_08190 IPR028082 Periplasmic binding protein-like I BER93_08195 IPR005275 L-fucose permease FucP BER93_08195 IPR005964 Bacterial glucose/galactose transporter BER93_08195 IPR011701 Major facilitator superfamily BER93_08195 IPR036259 BER93_08195 BER93_08200 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_08200 IPR011611 Carbohydrate kinase PfkB BER93_08200 IPR029056 Ribokinase-like BER93_08205 IPR008928 Six-hairpin glycosidase-like BER93_08205 IPR012341 Six-hairpin glycosidase BER93_08210 IPR000489 Pterin-binding BER93_08210 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain BER93_08210 IPR004223 Vitamin B12-dependent methionine synthase, activation domain BER93_08210 IPR006158 Cobalamin (vitamin B12)-binding domain BER93_08210 IPR011005 Dihydropteroate synthase-like BER93_08210 IPR011822 Cobalamin-dependent methionine synthase BER93_08210 IPR036594 BER93_08210 BER93_08210 IPR036724 BER93_08210 BER93_08210 IPR037010 BER93_08210 BER93_08215 IPR003726 Homocysteine S-methyltransferase BER93_08215 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT BER93_08215 IPR036589 BER93_08215 BER93_08220 IPR001845 HTH ArsR-type DNA-binding domain BER93_08220 IPR013216 Methyltransferase type 11 BER93_08220 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_08220 IPR036388 BER93_08220 BER93_08220 IPR036390 BER93_08220 BER93_08225 IPR006089 Acyl-CoA dehydrogenase, conserved site BER93_08225 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_08225 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_08225 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain BER93_08225 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_08225 IPR036250 BER93_08225 BER93_08225 IPR037069 BER93_08225 BER93_08230 IPR013830 BER93_08230 BER93_08230 IPR036514 BER93_08230 BER93_08240 IPR001900 BER93_08240 BER93_08240 IPR003029 Ribosomal protein S1, RNA-binding domain BER93_08240 IPR004476 Ribonuclease II/ribonuclease R BER93_08240 IPR011129 Cold shock protein BER93_08240 IPR011805 Ribonuclease R BER93_08240 IPR012340 Nucleic acid-binding, OB-fold BER93_08240 IPR013223 Ribonuclease B, N-terminal OB domain BER93_08240 IPR022966 Ribonuclease II/R, conserved site BER93_08240 IPR022967 RNA-binding domain, S1 BER93_08245 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_08245 IPR004441 RNA methyltransferase TrmH family BER93_08245 IPR013123 RNA 2-O ribose methyltransferase, substrate binding BER93_08245 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB BER93_08245 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_08245 IPR029028 Alpha/beta knot methyltransferases BER93_08245 IPR029064 50S ribosomal protein L30e-like BER93_08250 IPR000160 GGDEF domain BER93_08250 IPR029787 Nucleotide cyclase BER93_08255 IPR005987 Ribonuclease T BER93_08255 IPR012337 Ribonuclease H-like domain BER93_08255 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_08255 IPR036397 BER93_08255 BER93_08260 IPR026022 PhoU domain BER93_08260 IPR028366 Phosphate transport system protein PhoU BER93_08260 IPR038078 BER93_08260 BER93_08265 IPR003439 ABC transporter-like BER93_08265 IPR003593 AAA+ ATPase domain BER93_08265 IPR005670 Phosphate transport system permease protein 1 BER93_08265 IPR017871 ABC transporter, conserved site BER93_08265 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08270 IPR000515 MetI-like domain BER93_08270 IPR005672 Phosphate transport system permease protein PstA BER93_08270 IPR035906 BER93_08270 BER93_08275 IPR000515 MetI-like domain BER93_08275 IPR011864 Phosphate ABC transporter, permease protein PstC BER93_08275 IPR035906 BER93_08275 BER93_08280 IPR005673 ABC transporter, phosphate-binding protein PstS BER93_08280 IPR024370 PBP domain BER93_08290 IPR005673 ABC transporter, phosphate-binding protein PstS BER93_08290 IPR024370 PBP domain BER93_08305 IPR002559 Transposase, IS4-like BER93_08305 IPR025161 Putative transposase IS4/IS5 family BER93_08310 IPR001765 Carbonic anhydrase BER93_08310 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site BER93_08310 IPR036874 BER93_08310 BER93_08315 IPR011547 Sulphate transporter BER93_08315 IPR036513 BER93_08315 BER93_08320 IPR000445 Helix-hairpin-helix motif BER93_08320 IPR003265 HhH-GPD domain BER93_08320 IPR004036 Endonuclease III-like, conserved site-2 BER93_08320 IPR005759 Endonuclease III BER93_08320 IPR011257 DNA glycosylase BER93_08320 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal BER93_08335 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal BER93_08335 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain BER93_08335 IPR036944 BER93_08335 BER93_08340 IPR000086 NUDIX hydrolase domain BER93_08340 IPR010710 Protein of unknown function DUF1289 BER93_08340 IPR015797 NUDIX hydrolase domain-like BER93_08345 IPR001763 Rhodanese-like domain BER93_08345 IPR036873 BER93_08345 BER93_08350 IPR012467 Protein of unknown function DUF1684 BER93_08355 IPR002502 N-acetylmuramoyl-L-alanine amidase domain BER93_08355 IPR036505 BER93_08355 BER93_08360 IPR005302 Molybdenum cofactor sulfurase, C-terminal BER93_08360 IPR011037 Pyruvate kinase-like, insert domain BER93_08365 IPR000073 Alpha/beta hydrolase fold-1 BER93_08365 IPR029058 Alpha/Beta hydrolase fold BER93_08370 IPR000182 GNAT domain BER93_08370 IPR016181 Acyl-CoA N-acyltransferase BER93_08375 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_08380 IPR000241 Putative RNA methylase domain BER93_08380 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_08380 IPR004114 THUMP BER93_08380 IPR017244 Ribosomal RNA large subunit methyltransferase K/L BER93_08380 IPR019614 S-adenosylmethionine-dependent methyltransferase BER93_08380 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_08385 IPR002504 Inorganic polyphosphate/ATP-NAD kinase BER93_08385 IPR016064 ATP-NAD kinase-like domain BER93_08385 IPR017437 ATP-NAD kinase, PpnK-type, all-beta BER93_08385 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 BER93_08390 IPR010394 5-nucleotidase BER93_08395 IPR002559 Transposase, IS4-like BER93_08395 IPR008490 Transposase InsH, N-terminal BER93_08400 IPR021330 Protein of unknown function DUF2939 BER93_08410 IPR012337 Ribonuclease H-like domain BER93_08410 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_08410 IPR013620 Exonuclease C-terminal BER93_08410 IPR023607 Exodeoxyribonuclease I BER93_08410 IPR036397 BER93_08410 BER93_08410 IPR038649 BER93_08410 BER93_08415 IPR002938 Monooxygenase, FAD-binding BER93_08415 IPR027545 Kynurenine 3-monooxygenase BER93_08415 IPR036188 BER93_08415 BER93_08420 IPR000192 Aminotransferase class V domain BER93_08420 IPR010111 Kynureninase BER93_08420 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_08420 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_08420 IPR015424 Pyridoxal phosphate-dependent transferase BER93_08425 IPR032692 BER93_08425 BER93_08430 IPR010329 3-hydroxyanthranilic acid dioxygenase BER93_08430 IPR011051 RmlC-like cupin domain BER93_08430 IPR014710 RmlC-like jelly roll fold BER93_08435 IPR001765 Carbonic anhydrase BER93_08435 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site BER93_08435 IPR036874 BER93_08435 BER93_08460 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb BER93_08460 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_08460 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_08460 IPR004522 Asparagine-tRNA ligase BER93_08460 IPR012340 Nucleic acid-binding, OB-fold BER93_08465 IPR000361 FeS cluster biogenesis BER93_08465 IPR016092 FeS cluster insertion protein BER93_08465 IPR017870 FeS cluster insertion, C-terminal, conserved site BER93_08465 IPR035903 BER93_08465 BER93_08470 IPR000529 Ribosomal protein S6 BER93_08470 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BER93_08470 IPR020814 Ribosomal protein S6, plastid/chloroplast BER93_08470 IPR035980 BER93_08470 BER93_08475 IPR001648 Ribosomal protein S18 BER93_08475 IPR018275 Ribosomal protein S18, conserved site BER93_08475 IPR036870 BER93_08475 BER93_08480 IPR009027 Ribosomal protein L9/RNase H1, N-terminal BER93_08480 IPR020069 Ribosomal protein L9, C-terminal BER93_08480 IPR020070 Ribosomal protein L9, N-terminal BER93_08480 IPR020594 Ribosomal protein L9, bacteria/chloroplast BER93_08480 IPR036791 BER93_08480 BER93_08480 IPR036935 BER93_08480 BER93_08485 IPR003395 RecF/RecN/SMC, N-terminal BER93_08485 IPR010935 SMCs flexible hinge BER93_08485 IPR011890 Structural maintenance of chromosomes protein, prokaryotic BER93_08485 IPR024704 Structural maintenance of chromosomes protein BER93_08485 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08485 IPR036277 BER93_08485 BER93_08490 IPR007449 ZipA, C-terminal FtsZ-binding domain BER93_08490 IPR011919 Cell division protein ZipA BER93_08490 IPR036765 BER93_08490 BER93_08495 IPR001357 BRCT domain BER93_08495 IPR001679 NAD-dependent DNA ligase BER93_08495 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type BER93_08495 IPR004150 NAD-dependent DNA ligase, OB-fold BER93_08495 IPR010994 RuvA domain 2-like BER93_08495 IPR012340 Nucleic acid-binding, OB-fold BER93_08495 IPR013839 NAD-dependent DNA ligase, adenylation BER93_08495 IPR013840 NAD-dependent DNA ligase, N-terminal BER93_08495 IPR018239 NAD-dependent DNA ligase, active site BER93_08495 IPR036420 BER93_08495 BER93_08500 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_08500 IPR004525 Elongation factor P--(R)-beta-lysine ligase BER93_08500 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal BER93_08505 IPR021381 Protein of unknown function DUF3011 BER93_08515 IPR000649 Initiation factor 2B-related BER93_08515 IPR005251 Methylthioribose-1-phosphate isomerase BER93_08515 IPR011559 Initiation factor 2B alpha/beta/delta BER93_08515 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain BER93_08515 IPR037171 BER93_08515 BER93_08520 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal BER93_08520 IPR005743 DNA gyrase, subunit A BER93_08520 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel BER93_08520 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain BER93_08520 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta BER93_08520 IPR013760 DNA topoisomerase, type IIA-like domain BER93_08520 IPR035516 BER93_08520 BER93_08530 IPR012337 Ribonuclease H-like domain BER93_08535 IPR023636 Urocanase conserved site BER93_08535 IPR023637 Urocanase BER93_08535 IPR035085 BER93_08535 BER93_08535 IPR035400 BER93_08535 BER93_08535 IPR035401 BER93_08535 BER93_08535 IPR036190 BER93_08535 BER93_08535 IPR038364 BER93_08535 BER93_08540 IPR007709 N-formylglutamate amidohydrolase BER93_08540 IPR010247 N-formylglutamate deformylase BER93_08545 IPR001106 Aromatic amino acid lyase BER93_08545 IPR005921 Histidine ammonia-lyase BER93_08545 IPR008948 L-Aspartase-like BER93_08545 IPR022313 Phenylalanine/histidine ammonia-lyases, active site BER93_08545 IPR024083 Fumarase/histidase, N-terminal BER93_08550 IPR005920 Imidazolonepropionase BER93_08550 IPR006680 Amidohydrolase 1 BER93_08550 IPR011059 Metal-dependent hydrolase, composite domain BER93_08550 IPR032466 BER93_08550 BER93_08555 IPR006680 Amidohydrolase 1 BER93_08555 IPR010252 Formiminoglutamate deiminase BER93_08555 IPR011059 Metal-dependent hydrolase, composite domain BER93_08555 IPR032466 BER93_08555 BER93_08560 IPR000524 Transcription regulator HTH, GntR BER93_08560 IPR010248 Histidine utilization repressor BER93_08560 IPR011663 UbiC transcription regulator-associated BER93_08560 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain BER93_08560 IPR036388 BER93_08560 BER93_08560 IPR036390 BER93_08560 BER93_08565 IPR008769 Poly granule associated BER93_08570 IPR013433 Putative polyhydroxyalkanoic acid system protein BER93_08575 IPR000253 Forkhead-associated (FHA) domain BER93_08575 IPR008984 SMAD/FHA domain BER93_08575 IPR032030 BER93_08575 BER93_08580 IPR013130 Ferric reductase transmembrane component-like domain BER93_08580 IPR022837 Sulphoxide reductase heme-binding subunit YedZ BER93_08585 IPR003817 Phosphatidylserine decarboxylase-related BER93_08585 IPR033177 BER93_08585 BER93_08585 IPR033178 BER93_08585 BER93_08590 IPR003782 Copper chaperone SCO1/SenC BER93_08590 IPR036249 BER93_08590 BER93_08595 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_08595 IPR004556 Modification methylase HemK BER93_08595 IPR007848 Methyltransferase small domain BER93_08595 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase BER93_08595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_08605 IPR000453 Chorismate synthase BER93_08605 IPR020541 Chorismate synthase, conserved site BER93_08605 IPR035904 BER93_08605 BER93_08610 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_08610 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain BER93_08610 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_08610 IPR036291 BER93_08610 BER93_08615 IPR000534 Semialdehyde dehydrogenase, NAD-binding BER93_08615 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type BER93_08615 IPR012080 Aspartate-semialdehyde dehydrogenase BER93_08615 IPR012280 Semialdehyde dehydrogenase, dimerisation domain BER93_08615 IPR036291 BER93_08615 BER93_08625 IPR003660 HAMP linker domain BER93_08625 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_08625 IPR004090 Chemotaxis methyl-accepting receptor BER93_08625 IPR024478 4HB MCP domain BER93_08630 IPR003593 AAA+ ATPase domain BER93_08630 IPR014774 Circadian clock protein KaiC/DNA repair protein RadA BER93_08630 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08630 IPR030665 BER93_08630 BER93_08635 IPR000014 PAS domain BER93_08635 IPR001610 PAC motif BER93_08635 IPR001789 Signal transduction response regulator, receiver domain BER93_08635 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_08635 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_08635 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_08635 IPR011006 CheY-like superfamily BER93_08635 IPR013656 PAS fold-4 BER93_08635 IPR035965 BER93_08635 BER93_08635 IPR036097 BER93_08635 BER93_08635 IPR036890 BER93_08635 BER93_08640 IPR002514 Transposase IS3/IS911family BER93_08640 IPR009057 Homeodomain-like BER93_08655 IPR011990 Tetratricopeptide-like helical domain BER93_08660 IPR005616 Cytochrome C biogenesis protein CcmH BER93_08660 IPR038297 BER93_08660 BER93_08665 IPR002541 Cytochrome c assembly protein BER93_08665 IPR003567 Cytochrome c-type biogenesis protein BER93_08665 IPR003568 Cytochrome c-type biogenesis protein CcmF BER93_08665 IPR036249 BER93_08665 BER93_08675 IPR000209 Peptidase S8/S53 domain BER93_08675 IPR015500 Peptidase S8, subtilisin-related BER93_08675 IPR022398 Peptidase S8, subtilisin, His-active site BER93_08675 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_08675 IPR036852 BER93_08675 BER93_08680 IPR027383 Putative zinc-finger BER93_08685 IPR007627 RNA polymerase sigma-70 region 2 BER93_08685 IPR007630 RNA polymerase sigma-70 region 4 BER93_08685 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_08685 IPR013325 RNA polymerase sigma factor, region 2 BER93_08685 IPR014284 RNA polymerase sigma-70 like domain BER93_08685 IPR036388 BER93_08685 BER93_08710 IPR005828 General substrate transporter BER93_08710 IPR005829 Sugar transporter, conserved site BER93_08710 IPR036259 BER93_08710 BER93_08715 IPR011251 Luciferase-like domain BER93_08715 IPR019949 Luciferase family oxidoreductase, group 1 BER93_08715 IPR036661 BER93_08715 BER93_08720 IPR010331 Exopolysaccharide synthesis, ExoD BER93_08725 IPR000644 CBS domain BER93_08725 IPR002550 Domain of unknown function DUF21 BER93_08725 IPR005170 Transporter-associated domain BER93_08725 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 BER93_08725 IPR036318 BER93_08725 BER93_08730 IPR018445 Putitive phosphate transport regulator BER93_08730 IPR038078 BER93_08730 BER93_08735 IPR001204 Phosphate transporter BER93_08740 IPR003848 Domain of unknown function DUF218 BER93_08740 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_08745 IPR001563 Peptidase S10, serine carboxypeptidase BER93_08745 IPR018202 Peptidase S10, serine carboxypeptidase, active site BER93_08745 IPR029058 Alpha/Beta hydrolase fold BER93_08750 IPR001241 DNA topoisomerase, type IIA BER93_08750 IPR002288 DNA gyrase B subunit, C-terminal BER93_08750 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_08750 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative BER93_08750 IPR006171 Toprim domain BER93_08750 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 BER93_08750 IPR013759 DNA topoisomerase, type IIA, central domain BER93_08750 IPR013760 DNA topoisomerase, type IIA-like domain BER93_08750 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_08750 IPR018522 DNA topoisomerase, type IIA, conserved site BER93_08750 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_08750 IPR036890 BER93_08750 BER93_08760 IPR004468 CTP synthase BER93_08760 IPR017456 CTP synthase, N-terminal BER93_08760 IPR017926 Glutamine amidotransferase BER93_08760 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08760 IPR029062 Class I glutamine amidotransferase-like BER93_08765 IPR006218 DAHP synthetase I/KDSA BER93_08765 IPR006269 3-deoxy-8-phosphooctulonate synthase BER93_08765 IPR013785 Aldolase-type TIM barrel BER93_08770 IPR000941 Enolase BER93_08770 IPR020809 Enolase, conserved site BER93_08770 IPR020810 Enolase, C-terminal BER93_08770 IPR020811 Enolase, N-terminal BER93_08770 IPR029017 Enolase N-terminal domain-like BER93_08770 IPR036849 BER93_08770 BER93_08775 IPR007060 Septum formation initiator FtsL/DivIC BER93_08775 IPR023081 Cell division protein FtsB BER93_08780 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BER93_08780 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site BER93_08780 IPR029044 Nucleotide-diphospho-sugar transferases BER93_08780 IPR034683 BER93_08780 BER93_08785 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase BER93_08785 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site BER93_08785 IPR036571 BER93_08785 BER93_08790 IPR001656 Pseudouridine synthase, TruD BER93_08790 IPR020103 Pseudouridine synthase, catalytic domain BER93_08795 IPR002625 Smr protein/MutS2 C-terminal BER93_08795 IPR036063 BER93_08795 BER93_08800 IPR002828 Survival protein SurE-like phosphatase/nucleotidase BER93_08800 IPR030048 BER93_08800 BER93_08800 IPR036523 BER93_08800 BER93_08805 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase BER93_08805 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_08815 IPR011055 Duplicated hybrid motif BER93_08815 IPR016047 Peptidase M23 BER93_08815 IPR018392 LysM domain BER93_08815 IPR036779 BER93_08815 BER93_08855 IPR000073 Alpha/beta hydrolase fold-1 BER93_08855 IPR008220 Homoserine acetyltransferase BER93_08855 IPR029058 Alpha/Beta hydrolase fold BER93_08860 IPR002559 Transposase, IS4-like BER93_08860 IPR008490 Transposase InsH, N-terminal BER93_08865 IPR011990 Tetratricopeptide-like helical domain BER93_08870 IPR005616 Cytochrome C biogenesis protein CcmH BER93_08870 IPR038297 BER93_08870 BER93_08875 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE BER93_08875 IPR013740 Redoxin BER93_08875 IPR017937 Thioredoxin, conserved site BER93_08875 IPR036249 BER93_08875 BER93_08880 IPR002541 Cytochrome c assembly protein BER93_08880 IPR003567 Cytochrome c-type biogenesis protein BER93_08880 IPR003568 Cytochrome c-type biogenesis protein CcmF BER93_08880 IPR032523 BER93_08880 BER93_08885 IPR004329 CcmE/CycJ protein BER93_08885 IPR036127 BER93_08885 BER93_08890 IPR007078 Haem exporter protein D (CcmD) BER93_08895 IPR002541 Cytochrome c assembly protein BER93_08895 IPR003557 Cytochrome c-type biogenesis protein CcmC BER93_08900 IPR003544 Cytochrome c-type biogenesis protein CcmB BER93_08900 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BER93_08905 IPR003439 ABC transporter-like BER93_08905 IPR003593 AAA+ ATPase domain BER93_08905 IPR005895 ABC transporter, haem export, CcmA BER93_08905 IPR017871 ABC transporter, conserved site BER93_08905 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_08910 IPR004839 Aminotransferase, class I/classII BER93_08910 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_08910 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_08910 IPR015424 Pyridoxal phosphate-dependent transferase BER93_08915 IPR003010 Carbon-nitrogen hydrolase BER93_08915 IPR036526 BER93_08915 BER93_08920 IPR007788 Glutamine cyclotransferase BER93_08920 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like BER93_08920 IPR015943 WD40/YVTN repeat-like-containing domain BER93_08930 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_08930 IPR002942 RNA-binding S4 domain BER93_08930 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_08930 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_08930 IPR020103 Pseudouridine synthase, catalytic domain BER93_08930 IPR036986 BER93_08930 BER93_08935 IPR005234 Chromosome segregation/condensation protein ScpB BER93_08935 IPR036388 BER93_08935 BER93_08935 IPR036390 BER93_08935 BER93_08940 IPR003768 Prokaryotic chromosome segregation/condensation protein ScpA BER93_08945 IPR005545 YCII-related BER93_08945 IPR011008 Dimeric alpha-beta barrel BER93_08950 IPR002634 BolA protein BER93_08950 IPR036065 BER93_08950 BER93_08955 IPR000843 Transcription regulator HTH, LacI BER93_08955 IPR010982 Lambda repressor-like, DNA-binding domain BER93_08955 IPR028082 Periplasmic binding protein-like I BER93_08960 IPR000531 TonB-dependent receptor, beta-barrel BER93_08960 IPR013784 Carbohydrate-binding-like fold BER93_08965 IPR016883 Uncharacterised conserved protein UCP028431 BER93_08965 IPR019282 Domain of unknown function DUF2329 BER93_08970 IPR006059 Bacterial extracellular solute-binding, family 1 BER93_08975 IPR000515 MetI-like domain BER93_08975 IPR035906 BER93_08975 BER93_08980 IPR000515 MetI-like domain BER93_08980 IPR035906 BER93_08980 BER93_08985 IPR000421 Coagulation factor 5/8 C-terminal type domain BER93_08985 IPR008928 Six-hairpin glycosidase-like BER93_08985 IPR008979 Galactose-binding domain-like BER93_08985 IPR012341 Six-hairpin glycosidase BER93_08985 IPR035396 BER93_08985 BER93_08995 IPR002559 Transposase, IS4-like BER93_08995 IPR008490 Transposase InsH, N-terminal BER93_09000 IPR002816 Pheromone shutdown, TraB BER93_09000 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal BER93_09005 IPR016181 Acyl-CoA N-acyltransferase BER93_09010 IPR003010 Carbon-nitrogen hydrolase BER93_09010 IPR036526 BER93_09010 BER93_09015 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type BER93_09025 IPR003136 Cytidylate kinase BER93_09025 IPR011994 Cytidylate kinase domain BER93_09025 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09030 IPR000110 Ribosomal protein S1 BER93_09030 IPR003029 Ribosomal protein S1, RNA-binding domain BER93_09030 IPR012340 Nucleic acid-binding, OB-fold BER93_09030 IPR022967 RNA-binding domain, S1 BER93_09035 IPR000119 Histone-like bacterial DNA-binding protein BER93_09035 IPR005685 Integration host factor, beta subunit BER93_09035 IPR010992 Integration host factor (IHF)-like DNA-binding domain BER93_09035 IPR020816 Histone-like DNA-binding protein, conserved site BER93_09040 IPR010445 Protein of unknown function DUF1049 BER93_09045 IPR011990 Tetratricopeptide-like helical domain BER93_09045 IPR019734 Tetratricopeptide repeat BER93_09045 IPR030865 BER93_09045 BER93_09050 IPR000715 Glycosyl transferase, family 4 BER93_09055 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain BER93_09055 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_09055 IPR036291 BER93_09055 BER93_09060 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type BER93_09060 IPR005835 Nucleotidyl transferase BER93_09060 IPR029044 Nucleotide-diphospho-sugar transferases BER93_09065 IPR006153 Cation/H+ exchanger BER93_09065 IPR038770 BER93_09065 BER93_09070 IPR002514 Transposase IS3/IS911family BER93_09070 IPR009057 Homeodomain-like BER93_09085 IPR002559 Transposase, IS4-like BER93_09095 IPR023163 SMc04008-like domain BER93_09095 IPR036810 BER93_09095 BER93_09100 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase BER93_09100 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BER93_09100 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BER93_09100 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site BER93_09100 IPR036291 BER93_09100 BER93_09105 IPR000644 CBS domain BER93_09105 IPR001093 IMP dehydrogenase/GMP reductase BER93_09105 IPR005990 Inosine-5'-monophosphate dehydrogenase BER93_09105 IPR013785 Aldolase-type TIM barrel BER93_09105 IPR015875 IMP dehydrogenase / GMP reductase, conserved site BER93_09110 IPR001674 GMP synthase, C-terminal BER93_09110 IPR004739 GMP synthase, N-terminal BER93_09110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_09110 IPR017926 Glutamine amidotransferase BER93_09110 IPR022310 NAD/GMP synthase BER93_09110 IPR022955 GMP synthase BER93_09110 IPR029062 Class I glutamine amidotransferase-like BER93_09115 IPR002104 Integrase, catalytic BER93_09115 IPR010998 Integrase, Lambda-type, N-terminal BER93_09115 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_09115 IPR013762 Integrase-like, catalytic core BER93_09115 IPR025166 Domain of unknown function DUF4102 BER93_09115 IPR038488 BER93_09115 BER93_09120 IPR009061 DNA binding domain, putative BER93_09120 IPR010260 Bacteriophage P4, Orf88 BER93_09125 IPR002559 Transposase, IS4-like BER93_09125 IPR008490 Transposase InsH, N-terminal BER93_09140 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09145 IPR010522 Replication protein C, bacterial BER93_09150 IPR035225 BER93_09150 BER93_09155 IPR005569 Arc-like DNA binding BER93_09155 IPR010985 Ribbon-helix-helix BER93_09155 IPR013321 Arc-type ribbon-helix-helix BER93_09160 IPR002716 PIN domain BER93_09160 IPR022907 VapC family BER93_09160 IPR029060 PIN domain-like BER93_09165 IPR014147 Type IV conjugative transfer protein TrbJ BER93_09165 IPR014158 Type IV secretion system, VirB5 BER93_09170 IPR002514 Transposase IS3/IS911family BER93_09170 IPR009057 Homeodomain-like BER93_09175 IPR002559 Transposase, IS4-like BER93_09175 IPR008490 Transposase InsH, N-terminal BER93_09180 IPR001584 Integrase, catalytic core BER93_09180 IPR012337 Ribonuclease H-like domain BER93_09180 IPR025948 HTH-like domain BER93_09180 IPR036397 BER93_09180 BER93_09195 IPR002559 Transposase, IS4-like BER93_09200 IPR002559 Transposase, IS4-like BER93_09200 IPR025161 Putative transposase IS4/IS5 family BER93_09205 IPR002559 Transposase, IS4-like BER93_09205 IPR008490 Transposase InsH, N-terminal BER93_09210 IPR004154 Anticodon-binding BER93_09210 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit BER93_09210 IPR015807 Histidine-tRNA ligase BER93_09210 IPR036621 BER93_09210 BER93_09215 IPR000831 Trp repressor BER93_09215 IPR010921 Trp repressor/replication initiator BER93_09215 IPR013368 TrpR homologue YerC/YecD BER93_09215 IPR038116 BER93_09215 BER93_09220 IPR013115 Histidine biosynthesis HisG, C-terminal BER93_09220 IPR013820 ATP phosphoribosyltransferase, catalytic domain BER93_09220 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_09220 IPR018198 ATP phosphoribosyltransferase, conserved site BER93_09220 IPR020621 ATP phosphoribosyltransferase HisG, long form BER93_09225 IPR001692 Histidinol dehydrogenase, conserved site BER93_09225 IPR012131 Histidinol dehydrogenase BER93_09225 IPR016161 Aldehyde/histidinol dehydrogenase BER93_09225 IPR022695 Histidinol dehydrogenase, monofunctional BER93_09230 IPR004839 Aminotransferase, class I/classII BER93_09230 IPR005861 Histidinol-phosphate aminotransferase family BER93_09230 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_09230 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_09230 IPR015424 Pyridoxal phosphate-dependent transferase BER93_09235 IPR000807 Imidazoleglycerol-phosphate dehydratase BER93_09235 IPR005954 Histidinol-phosphatase BER93_09235 IPR006543 Histidinol-phosphate phosphatase BER93_09235 IPR006549 HAD-superfamily hydrolase,subfamily IIIA BER93_09235 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site BER93_09235 IPR020566 Histidine biosynthesis bifunctional protein HisB BER93_09235 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_09235 IPR023214 HAD-like domain BER93_09235 IPR036412 BER93_09235 BER93_09235 IPR038494 BER93_09235 BER93_09240 IPR010139 Imidazole glycerol phosphate synthase, subunit H BER93_09240 IPR017926 Glutamine amidotransferase BER93_09240 IPR029062 Class I glutamine amidotransferase-like BER93_09245 IPR006062 Histidine biosynthesis BER93_09245 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA BER93_09245 IPR011060 Ribulose-phosphate binding barrel BER93_09245 IPR013785 Aldolase-type TIM barrel BER93_09245 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase BER93_09250 IPR004651 Histidine biosynthesis, HisF BER93_09250 IPR006062 Histidine biosynthesis BER93_09250 IPR011060 Ribulose-phosphate binding barrel BER93_09250 IPR013785 Aldolase-type TIM barrel BER93_09255 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain BER93_09255 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase BER93_09255 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like BER93_09255 IPR023019 Histidine biosynthesis bifunctional protein HisIE BER93_09255 IPR038019 BER93_09255 BER93_09260 IPR004843 Calcineurin-like phosphoesterase domain, apaH type BER93_09260 IPR029052 Metallo-dependent phosphatase-like BER93_09260 IPR032285 BER93_09260 BER93_09260 IPR032288 BER93_09260 BER93_09270 IPR002559 Transposase, IS4-like BER93_09275 IPR001096 Peptidase C13, legumain BER93_09275 IPR018247 EF-Hand 1, calcium-binding site BER93_09275 IPR029030 Caspase-like domain BER93_09280 IPR006439 HAD hydrolase, subfamily IA BER93_09280 IPR023214 HAD-like domain BER93_09280 IPR023943 Enolase-phosphatase E1 BER93_09280 IPR036412 BER93_09280 BER93_09285 IPR004313 Acireductone dioxygenase ARD family BER93_09285 IPR011051 RmlC-like cupin domain BER93_09285 IPR014710 RmlC-like jelly roll fold BER93_09285 IPR023956 Acireductone dioxygenase ARD BER93_09290 IPR001303 Class II aldolase/adducin N-terminal BER93_09290 IPR017714 Methylthioribulose-1-phosphate dehydratase BER93_09290 IPR036409 BER93_09290 BER93_09295 IPR002293 Amino acid/polyamine transporter I BER93_09300 IPR002293 Amino acid/polyamine transporter I BER93_09305 IPR000086 NUDIX hydrolase domain BER93_09305 IPR015797 NUDIX hydrolase domain-like BER93_09310 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_09310 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain BER93_09310 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_09310 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BER93_09310 IPR036291 BER93_09310 BER93_09315 IPR004113 FAD-linked oxidase, C-terminal BER93_09315 IPR006094 FAD linked oxidase, N-terminal BER93_09315 IPR016164 FAD-linked oxidase-like, C-terminal BER93_09315 IPR016167 FAD-binding, type 2, subdomain 1 BER93_09315 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 BER93_09315 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BER93_09315 IPR036318 BER93_09315 BER93_09320 IPR012661 Conserved hypothetical protein CHP02448 BER93_09325 IPR025178 Domain of unknown function DUF4105 BER93_09330 IPR001059 Translation elongation factor P/YeiP, central BER93_09330 IPR008991 Translation protein SH3-like domain BER93_09330 IPR011897 Translation elongation factor P-like, YeiP BER93_09330 IPR012340 Nucleic acid-binding, OB-fold BER93_09330 IPR013185 Translation elongation factor, KOW-like BER93_09330 IPR013852 Translation elongation factor P/YeiP, conserved site BER93_09330 IPR014722 Ribosomal protein L2 domain 2 BER93_09330 IPR015365 Elongation factor P, C-terminal BER93_09330 IPR020599 Translation elongation factor P/YeiP BER93_09335 IPR002347 Glucose/ribitol dehydrogenase BER93_09335 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_09335 IPR036291 BER93_09335 BER93_09340 IPR000891 Pyruvate carboxyltransferase BER93_09340 IPR013785 Aldolase-type TIM barrel BER93_09345 IPR001753 Crotonase superfamily BER93_09345 IPR014748 Crontonase, C-terminal BER93_09345 IPR029045 ClpP/crotonase-like domain BER93_09350 IPR007167 Ferrous iron transporter FeoA domain BER93_09350 IPR008988 Transcriptional repressor, C-terminal BER93_09350 IPR038157 BER93_09350 BER93_09355 IPR006073 GTP binding domain BER93_09355 IPR011640 Ferrous iron transport protein B, C-terminal BER93_09355 IPR011642 Nucleoside recognition Gate BER93_09355 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09355 IPR030389 BER93_09355 BER93_09370 IPR000846 Dihydrodipicolinate reductase, N-terminal BER93_09370 IPR022663 Dihydrodipicolinate reductase, C-terminal BER93_09370 IPR022664 Dihydrodipicolinate reductase, conserved site BER93_09370 IPR023940 Dihydrodipicolinate reductase, bacterial BER93_09370 IPR036291 BER93_09370 BER93_09375 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain BER93_09375 IPR006274 Carbamoyl-phosphate synthase, small subunit BER93_09375 IPR017926 Glutamine amidotransferase BER93_09375 IPR029062 Class I glutamine amidotransferase-like BER93_09375 IPR036480 BER93_09375 BER93_09380 IPR003959 ATPase, AAA-type, core BER93_09380 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09385 IPR002716 PIN domain BER93_09385 IPR029060 PIN domain-like BER93_09390 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain BER93_09390 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain BER93_09390 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain BER93_09390 IPR006275 Carbamoyl-phosphate synthase, large subunit BER93_09390 IPR011607 Methylglyoxal synthase-like domain BER93_09390 IPR016185 Pre-ATP-grasp domain BER93_09390 IPR036897 BER93_09390 BER93_09390 IPR036914 BER93_09390 BER93_09395 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal BER93_09395 IPR006359 Transcription elongation factor GreA BER93_09395 IPR018151 Transcription elongation factor, GreA/GreB, conserved site BER93_09395 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal BER93_09395 IPR023459 Transcription elongation factor GreA/GreB family BER93_09395 IPR028624 Transcription elongation factor GreA/GreB BER93_09395 IPR036805 BER93_09395 BER93_09395 IPR036953 BER93_09395 BER93_09400 IPR016631 Regulatory, RpfE BER93_09405 IPR001667 DDH domain BER93_09405 IPR003156 DHHA1 domain BER93_09405 IPR004610 Bacterial RecJ exonuclease BER93_09405 IPR038763 BER93_09405 BER93_09410 IPR000352 Peptide chain release factor class I/class II BER93_09410 IPR004374 Peptide chain release factor 2 BER93_09410 IPR005139 Peptide chain release factor BER93_09415 IPR002313 Lysine-tRNA ligase, class II BER93_09415 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_09415 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_09415 IPR012340 Nucleic acid-binding, OB-fold BER93_09415 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal BER93_09420 IPR001789 Signal transduction response regulator, receiver domain BER93_09420 IPR003607 HD/PDEase domain BER93_09420 IPR006674 HD domain BER93_09420 IPR011006 CheY-like superfamily BER93_09430 IPR001789 Signal transduction response regulator, receiver domain BER93_09430 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_09430 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_09430 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_09430 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_09430 IPR011006 CheY-like superfamily BER93_09430 IPR036097 BER93_09430 BER93_09430 IPR036641 BER93_09430 BER93_09430 IPR036890 BER93_09430 BER93_09435 IPR001753 Crotonase superfamily BER93_09435 IPR029045 ClpP/crotonase-like domain BER93_09440 IPR000873 AMP-dependent synthetase/ligase BER93_09440 IPR020845 AMP-binding, conserved site BER93_09440 IPR025110 AMP-binding enzyme C-terminal domain BER93_09450 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel BER93_09450 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha BER93_09450 IPR006249 Aconitate/iron regulatory protein 2 BER93_09450 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_09450 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_09450 IPR018136 Aconitase family, 4Fe-4S cluster binding site BER93_09450 IPR036008 BER93_09450 BER93_09455 IPR007159 AbrB-like domain BER93_09455 IPR037914 BER93_09455 BER93_09460 IPR002716 PIN domain BER93_09460 IPR029060 PIN domain-like BER93_09465 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha BER93_09465 IPR004406 Aconitase B, bacterial BER93_09465 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_09465 IPR015929 Aconitase B, N-terminal, bacterial BER93_09465 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_09465 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 BER93_09465 IPR015933 Aconitase B, HEAT-like, bacterial BER93_09465 IPR018136 Aconitase family, 4Fe-4S cluster binding site BER93_09465 IPR036008 BER93_09465 BER93_09465 IPR036288 BER93_09465 BER93_09470 IPR000073 Alpha/beta hydrolase fold-1 BER93_09470 IPR000639 Epoxide hydrolase-like BER93_09470 IPR029058 Alpha/Beta hydrolase fold BER93_09475 IPR000014 PAS domain BER93_09475 IPR000160 GGDEF domain BER93_09475 IPR001610 PAC motif BER93_09475 IPR001633 EAL domain BER93_09475 IPR003018 GAF domain BER93_09475 IPR012226 Oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase BER93_09475 IPR029016 GAF domain-like BER93_09475 IPR029787 Nucleotide cyclase BER93_09475 IPR035919 BER93_09475 BER93_09475 IPR035965 BER93_09475 BER93_09480 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_09480 IPR001789 Signal transduction response regulator, receiver domain BER93_09480 IPR008248 Signal transduction response regulator, chemotaxis, CheB BER93_09480 IPR011006 CheY-like superfamily BER93_09480 IPR035909 BER93_09480 BER93_09485 IPR005659 Chemoreceptor glutamine deamidase CheD BER93_09485 IPR011324 Cytotoxic necrotizing factor-like, catalytic BER93_09485 IPR038592 BER93_09485 BER93_09490 IPR000780 MCP methyltransferase, CheR-type BER93_09490 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal BER93_09490 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BER93_09490 IPR026024 Chemotaxis protein methyltransferase CheR BER93_09490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_09490 IPR036804 BER93_09490 BER93_09500 IPR002545 CheW-like protein BER93_09500 IPR036061 BER93_09500 BER93_09510 IPR003660 HAMP linker domain BER93_09510 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09510 IPR004090 Chemotaxis methyl-accepting receptor BER93_09510 IPR024478 4HB MCP domain BER93_09520 IPR003660 HAMP linker domain BER93_09520 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09520 IPR024478 4HB MCP domain BER93_09525 IPR003660 HAMP linker domain BER93_09525 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09525 IPR004090 Chemotaxis methyl-accepting receptor BER93_09525 IPR024478 4HB MCP domain BER93_09535 IPR003660 HAMP linker domain BER93_09535 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09535 IPR024478 4HB MCP domain BER93_09545 IPR025737 MetA-pathway of phenol degradation, putative BER93_09560 IPR002545 CheW-like protein BER93_09560 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_09560 IPR004105 Histidine kinase CheA-like, homodimeric domain BER93_09560 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_09560 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_09560 IPR036061 BER93_09560 BER93_09560 IPR036097 BER93_09560 BER93_09560 IPR036641 BER93_09560 BER93_09560 IPR036890 BER93_09560 BER93_09560 IPR037006 BER93_09560 BER93_09565 IPR001789 Signal transduction response regulator, receiver domain BER93_09565 IPR011006 CheY-like superfamily BER93_09570 IPR002645 STAS domain BER93_09570 IPR036513 BER93_09570 BER93_09575 IPR002545 CheW-like protein BER93_09575 IPR036061 BER93_09575 BER93_09580 IPR025669 AAA domain BER93_09580 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09585 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_09585 IPR025713 Motility protein B, N-terminal domain BER93_09585 IPR036737 BER93_09585 BER93_09590 IPR002898 MotA/TolQ/ExbB proton channel BER93_09615 IPR003491 Replication initiation factor BER93_09620 IPR003512 Bacteriophage M13, G5P, DNA-binding BER93_09620 IPR012340 Nucleic acid-binding, OB-fold BER93_09635 IPR019670 Protein of unkown function DUF2523 BER93_09640 IPR008900 Zona occludens toxin BER93_09640 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09655 IPR003491 Replication initiation factor BER93_09660 IPR012340 Nucleic acid-binding, OB-fold BER93_09680 IPR019670 Protein of unkown function DUF2523 BER93_09685 IPR008900 Zona occludens toxin BER93_09695 IPR021077 Bacteriophage phi-Lf, Orf112 BER93_09705 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal BER93_09705 IPR017726 Fe/S biogenesis protein NfuA BER93_09705 IPR034904 BER93_09705 BER93_09705 IPR035903 BER93_09705 BER93_09710 IPR001533 Transcriptional coactivator/pterin dehydratase BER93_09710 IPR036428 BER93_09710 BER93_09715 IPR006260 TonB, C-terminal BER93_09715 IPR037682 BER93_09715 BER93_09720 IPR002514 Transposase IS3/IS911family BER93_09720 IPR009057 Homeodomain-like BER93_09725 IPR001584 Integrase, catalytic core BER93_09725 IPR012337 Ribonuclease H-like domain BER93_09725 IPR025948 HTH-like domain BER93_09725 IPR036397 BER93_09725 BER93_09730 IPR001584 Integrase, catalytic core BER93_09730 IPR012337 Ribonuclease H-like domain BER93_09740 IPR002559 Transposase, IS4-like BER93_09750 IPR002942 RNA-binding S4 domain BER93_09750 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_09750 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site BER93_09750 IPR006225 Pseudouridine synthase, RluC/RluD BER93_09750 IPR020103 Pseudouridine synthase, catalytic domain BER93_09750 IPR036986 BER93_09750 BER93_09755 IPR003029 Ribosomal protein S1, RNA-binding domain BER93_09755 IPR004659 Ribonuclease E/G BER93_09755 IPR012340 Nucleic acid-binding, OB-fold BER93_09755 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G BER93_09755 IPR022967 RNA-binding domain, S1 BER93_09755 IPR028878 Ribonuclease E BER93_09760 IPR000792 Transcription regulator LuxR, C-terminal BER93_09760 IPR001789 Signal transduction response regulator, receiver domain BER93_09760 IPR011006 CheY-like superfamily BER93_09760 IPR016032 Signal transduction response regulator, C-terminal effector BER93_09765 IPR001763 Rhodanese-like domain BER93_09765 IPR020936 Uncharacterised protein family UPF0176 BER93_09765 IPR036873 BER93_09765 BER93_09775 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain BER93_09785 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal BER93_09785 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_09785 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation BER93_09785 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal BER93_09785 IPR017476 UDP-glucose/GDP-mannose dehydrogenase BER93_09785 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase BER93_09785 IPR036220 BER93_09785 BER93_09785 IPR036291 BER93_09785 BER93_09795 IPR002559 Transposase, IS4-like BER93_09795 IPR008490 Transposase InsH, N-terminal BER93_09800 IPR037143 BER93_09800 BER93_09805 IPR002514 Transposase IS3/IS911family BER93_09805 IPR009057 Homeodomain-like BER93_09815 IPR001584 Integrase, catalytic core BER93_09815 IPR012337 Ribonuclease H-like domain BER93_09815 IPR036397 BER93_09815 BER93_09835 IPR021733 Protein of unknown function DUF3304 BER93_09840 IPR025391 Domain of unknown function DUF4123 BER93_09845 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_09845 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_09845 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_09845 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_09845 IPR037026 BER93_09845 BER93_09855 IPR001270 ClpA/B family BER93_09855 IPR003593 AAA+ ATPase domain BER93_09855 IPR003959 ATPase, AAA-type, core BER93_09855 IPR004176 Clp, N-terminal BER93_09855 IPR017729 Type VI secretion system, ATPase ClpV1 BER93_09855 IPR018368 ClpA/B, conserved site 1 BER93_09855 IPR019489 Clp ATPase, C-terminal BER93_09855 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_09855 IPR036628 BER93_09855 BER93_09860 IPR010732 Protein of unknown function DUF1305 BER93_09865 IPR010272 Type VI secretion system, VCA0110 BER93_09870 IPR007048 GpW/Gp25/anti-adapter protein IraD BER93_09870 IPR017737 Type VI secretion system, lysozyme-related protein BER93_09875 IPR008514 Type VI secretion system effector, Hcp BER93_09875 IPR036624 BER93_09875 BER93_09880 IPR010269 Protein of unknown function DUF877 BER93_09885 IPR008312 Uncharacterised conserved protein UCP028301 BER93_09890 IPR011990 Tetratricopeptide-like helical domain BER93_09895 IPR017734 Type VI secretion system, lipoprotein SciN BER93_09895 IPR038706 BER93_09895 BER93_09900 IPR010263 Protein of unknown function DUF876 BER93_09905 IPR017732 Type IV / VI secretion system, DotU BER93_09905 IPR038522 BER93_09905 BER93_09910 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_09910 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_09910 IPR037026 BER93_09910 BER93_09920 IPR028950 Immunity protein 43 BER93_09920 IPR028966 Immunity protein 44 BER93_09930 IPR028950 Immunity protein 43 BER93_09930 IPR028966 Immunity protein 44 BER93_09935 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_09935 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_09935 IPR037026 BER93_09935 BER93_09945 IPR028950 Immunity protein 43 BER93_09945 IPR028966 Immunity protein 44 BER93_09955 IPR028950 Immunity protein 43 BER93_09955 IPR028966 Immunity protein 44 BER93_09965 IPR028950 Immunity protein 43 BER93_09965 IPR028966 Immunity protein 44 BER93_09975 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_09975 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_09975 IPR037026 BER93_09975 BER93_09980 IPR002514 Transposase IS3/IS911family BER93_09980 IPR009057 Homeodomain-like BER93_09985 IPR002559 Transposase, IS4-like BER93_09985 IPR025161 Putative transposase IS4/IS5 family BER93_10010 IPR019626 Stress-induced protein, KGG, repeat BER93_10015 IPR009078 Ferritin-like superfamily BER93_10015 IPR010287 Domain of unknown function DUF892 BER93_10015 IPR012347 Ferritin-related BER93_10030 IPR002559 Transposase, IS4-like BER93_10030 IPR008490 Transposase InsH, N-terminal BER93_10040 IPR000878 Tetrapyrrole methylase BER93_10040 IPR006367 Sirohaem synthase, N-terminal BER93_10040 IPR014777 Tetrapyrrole methylase, subdomain 1 BER93_10040 IPR019478 Sirohaem synthase, dimerisation domain BER93_10040 IPR028281 Siroheme synthase, central domain BER93_10040 IPR035996 BER93_10040 BER93_10040 IPR036291 BER93_10040 BER93_10050 IPR013482 Molybdenum cofactor guanylyltransferase BER93_10050 IPR025877 MobA-like NTP transferase domain BER93_10050 IPR029044 Nucleotide-diphospho-sugar transferases BER93_10055 IPR001453 Molybdopterin binding domain BER93_10055 IPR005110 MoeA, N-terminal and linker domain BER93_10055 IPR005111 MoeA, C-terminal, domain IV BER93_10055 IPR008284 Molybdenum cofactor biosynthesis, conserved site BER93_10055 IPR036135 BER93_10055 BER93_10055 IPR036425 BER93_10055 BER93_10055 IPR036688 BER93_10055 BER93_10065 IPR010686 Protein of unknown function DUF1264 BER93_10070 IPR000531 TonB-dependent receptor, beta-barrel BER93_10070 IPR010104 Bacterial TonB-dependent receptor BER93_10070 IPR012910 TonB-dependent receptor, plug BER93_10070 IPR037066 BER93_10070 BER93_10075 IPR000594 UBA/THIF-type NAD/FAD binding fold BER93_10075 IPR001763 Rhodanese-like domain BER93_10075 IPR035985 BER93_10075 BER93_10075 IPR036873 BER93_10075 BER93_10080 IPR001453 Molybdopterin binding domain BER93_10080 IPR005110 MoeA, N-terminal and linker domain BER93_10080 IPR005111 MoeA, C-terminal, domain IV BER93_10080 IPR036135 BER93_10080 BER93_10080 IPR036425 BER93_10080 BER93_10080 IPR036688 BER93_10080 BER93_10085 IPR003593 AAA+ ATPase domain BER93_10085 IPR005225 Small GTP-binding protein domain BER93_10085 IPR006073 GTP binding domain BER93_10085 IPR015946 K homology domain-like, alpha/beta BER93_10085 IPR016484 GTP-binding protein EngA BER93_10085 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10085 IPR032859 BER93_10085 BER93_10090 IPR002372 Pyrrolo-quinoline quinone repeat BER93_10090 IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily BER93_10090 IPR015943 WD40/YVTN repeat-like-containing domain BER93_10090 IPR017687 Outer membrane protein assembly factor BamB BER93_10090 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BER93_10095 IPR011990 Tetratricopeptide-like helical domain BER93_10095 IPR018704 Domain of unknown function DUF09976 BER93_10100 IPR025194 Domain of unknown function DUF4115 BER93_10105 IPR011990 Tetratricopeptide-like helical domain BER93_10105 IPR013360 Pilus biogenesis/stability type IV, PilW BER93_10105 IPR019734 Tetratricopeptide repeat BER93_10110 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr BER93_10110 IPR007197 Radical SAM BER93_10110 IPR013785 Aldolase-type TIM barrel BER93_10110 IPR027492 Dual-specificity RNA methyltransferase RlmN BER93_10115 IPR001564 Nucleoside diphosphate kinase BER93_10115 IPR023005 Nucleoside diphosphate kinase, active site BER93_10115 IPR034907 BER93_10115 BER93_10115 IPR036850 BER93_10115 BER93_10120 IPR001647 DNA-binding HTH domain, TetR-type BER93_10120 IPR009057 Homeodomain-like BER93_10120 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BER93_10120 IPR036271 BER93_10120 BER93_10125 IPR001753 Crotonase superfamily BER93_10125 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal BER93_10125 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding BER93_10125 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_10125 IPR013328 Dehydrogenase, multihelical BER93_10125 IPR029045 ClpP/crotonase-like domain BER93_10125 IPR036291 BER93_10125 BER93_10130 IPR002155 Thiolase BER93_10130 IPR016039 Thiolase-like BER93_10130 IPR020610 Thiolase, active site BER93_10130 IPR020613 Thiolase, conserved site BER93_10130 IPR020615 Thiolase, acyl-enzyme intermediate active site BER93_10130 IPR020616 Thiolase, N-terminal BER93_10130 IPR020617 Thiolase, C-terminal BER93_10135 IPR001807 Chloride channel, voltage gated BER93_10135 IPR014743 Chloride channel, core BER93_10140 IPR002559 Transposase, IS4-like BER93_10140 IPR008490 Transposase InsH, N-terminal BER93_10145 IPR003593 AAA+ ATPase domain BER93_10145 IPR003959 ATPase, AAA-type, core BER93_10145 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal BER93_10145 IPR021886 MgsA AAA+ ATPase C-terminal BER93_10145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10145 IPR032423 BER93_10145 BER93_10150 IPR004564 Outer membrane lipoprotein carrier protein LolA-like BER93_10150 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria BER93_10150 IPR029046 Lipoprotein localisation LolA/LolB/LppX BER93_10155 IPR002931 Transglutaminase-like BER93_10155 IPR024618 Domain of unknown function DUF3857 BER93_10155 IPR038765 BER93_10155 BER93_10160 IPR002543 FtsK domain BER93_10160 IPR003593 AAA+ ATPase domain BER93_10160 IPR018541 FtsK gamma domain BER93_10160 IPR025199 Domain of unknown function DUF4117 BER93_10160 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10160 IPR036388 BER93_10160 BER93_10160 IPR036390 BER93_10160 BER93_10165 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II BER93_10165 IPR005982 Thioredoxin reductase BER93_10165 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site BER93_10165 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_10165 IPR036188 BER93_10165 BER93_10170 IPR007434 Protein of unknown function DUF482 BER93_10170 IPR016181 Acyl-CoA N-acyltransferase BER93_10175 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase BER93_10175 IPR016181 Acyl-CoA N-acyltransferase BER93_10180 IPR004368 Translation initiation factor IF-1 BER93_10180 IPR006196 RNA-binding domain, S1, IF1 type BER93_10180 IPR012340 Nucleic acid-binding, OB-fold BER93_10180 IPR022967 RNA-binding domain, S1 BER93_10185 IPR001270 ClpA/B family BER93_10185 IPR003593 AAA+ ATPase domain BER93_10185 IPR003959 ATPase, AAA-type, core BER93_10185 IPR004176 Clp, N-terminal BER93_10185 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA BER93_10185 IPR018368 ClpA/B, conserved site 1 BER93_10185 IPR019489 Clp ATPase, C-terminal BER93_10185 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10185 IPR028299 ClpA/B, conserved site 2 BER93_10185 IPR036628 BER93_10185 BER93_10190 IPR003769 Adaptor protein ClpS, core BER93_10190 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BER93_10190 IPR022935 ATP-dependent Clp protease adaptor protein ClpS BER93_10195 IPR000086 NUDIX hydrolase domain BER93_10195 IPR015797 NUDIX hydrolase domain-like BER93_10195 IPR020084 NUDIX hydrolase, conserved site BER93_10200 IPR004506 tRNA-specific 2-thiouridylase BER93_10200 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_10200 IPR023382 Adenine nucleotide alpha hydrolase-like domains BER93_10205 IPR007451 Uncharacterised protein family UPF0274 BER93_10205 IPR035932 BER93_10205 BER93_10210 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_10230 IPR000014 PAS domain BER93_10230 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_10230 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_10230 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain BER93_10230 IPR013656 PAS fold-4 BER93_10230 IPR035965 BER93_10230 BER93_10230 IPR036890 BER93_10230 BER93_10235 IPR000160 GGDEF domain BER93_10235 IPR001633 EAL domain BER93_10235 IPR001789 Signal transduction response regulator, receiver domain BER93_10235 IPR011006 CheY-like superfamily BER93_10235 IPR029787 Nucleotide cyclase BER93_10235 IPR035919 BER93_10235 BER93_10240 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_10240 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_10240 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_10240 IPR036097 BER93_10240 BER93_10240 IPR036890 BER93_10240 BER93_10245 IPR036679 BER93_10245 BER93_10250 IPR007412 Anti-sigma-28 factor, FlgM BER93_10250 IPR031316 BER93_10250 BER93_10250 IPR035890 BER93_10250 BER93_10255 IPR013974 SAF domain BER93_10255 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BER93_10260 IPR001789 Signal transduction response regulator, receiver domain BER93_10260 IPR002545 CheW-like protein BER93_10260 IPR011006 CheY-like superfamily BER93_10260 IPR024181 Chemotaxis response regulator CheV BER93_10260 IPR036061 BER93_10260 BER93_10265 IPR001444 Flagellar basal body rod protein, N-terminal BER93_10265 IPR006300 Flagellar basal-body rod protein FlgB BER93_10270 IPR001444 Flagellar basal body rod protein, N-terminal BER93_10270 IPR006299 Flagellar basal-body rod protein FlgC BER93_10270 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_10270 IPR019776 Flagellar basal body rod protein, conserved site BER93_10275 IPR005648 Flagellar hook capping protein BER93_10275 IPR025963 FlgD Tudor-like domain BER93_10275 IPR025965 FlgD Ig-like domain BER93_10280 IPR001444 Flagellar basal body rod protein, N-terminal BER93_10280 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_10280 IPR011491 Flagellar basal body FlaE BER93_10280 IPR019776 Flagellar basal body rod protein, conserved site BER93_10280 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER93_10280 IPR037058 BER93_10280 BER93_10280 IPR037925 BER93_10280 BER93_10285 IPR001444 Flagellar basal body rod protein, N-terminal BER93_10285 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_10285 IPR012836 Flagellar basal-body rod FlgF BER93_10285 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER93_10285 IPR037925 BER93_10285 BER93_10290 IPR001444 Flagellar basal body rod protein, N-terminal BER93_10290 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_10290 IPR012834 Flagellar basal-body rod FlgG BER93_10290 IPR019776 Flagellar basal body rod protein, conserved site BER93_10290 IPR020013 Fagellar hook-basal body protein, FlgE/F/G BER93_10290 IPR037925 BER93_10290 BER93_10295 IPR000527 Flagellar L-ring protein BER93_10300 IPR001782 Flagellar P-ring protein BER93_10305 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain BER93_10305 IPR019301 Flagellar protein FlgJ, N-terminal BER93_10310 IPR001444 Flagellar basal body rod protein, N-terminal BER93_10310 IPR002371 Flagellar hook-associated protein, FlgK BER93_10310 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BER93_10315 IPR001029 Flagellin, D0/D1 domain BER93_10315 IPR013384 Flagellar hook-associated protein 3 BER93_10320 IPR001029 Flagellin, D0/D1 domain BER93_10320 IPR001492 Flagellin BER93_10320 IPR010810 Flagellin hook, IN motif BER93_10325 IPR003481 Flagellar hook-associated protein 2, N-terminal BER93_10325 IPR010809 Flagellar hook-associated 2, C-terminal BER93_10325 IPR010810 Flagellin hook, IN motif BER93_10330 IPR003713 Flagellar protein FliS BER93_10330 IPR036584 BER93_10330 BER93_10340 IPR031800 BER93_10340 BER93_10345 IPR000792 Transcription regulator LuxR, C-terminal BER93_10345 IPR001789 Signal transduction response regulator, receiver domain BER93_10345 IPR011006 CheY-like superfamily BER93_10345 IPR016032 Signal transduction response regulator, C-terminal effector BER93_10350 IPR000394 RNA polymerase sigma factor 54 BER93_10350 IPR007046 RNA polymerase sigma factor 54, core-binding BER93_10350 IPR007634 RNA polymerase sigma factor 54, DNA-binding BER93_10350 IPR038709 BER93_10350 BER93_10355 IPR001789 Signal transduction response regulator, receiver domain BER93_10355 IPR011006 CheY-like superfamily BER93_10360 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_10360 IPR002197 DNA binding HTH domain, Fis-type BER93_10360 IPR003593 AAA+ ATPase domain BER93_10360 IPR009057 Homeodomain-like BER93_10360 IPR010518 Flagellar regulatory FleQ BER93_10360 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_10360 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_10360 IPR025944 Sigma-54 interaction domain, conserved site BER93_10360 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10365 IPR002559 Transposase, IS4-like BER93_10370 IPR001173 Glycosyltransferase 2-like BER93_10370 IPR029044 Nucleotide-diphospho-sugar transferases BER93_10380 IPR001624 Flagellar hook-basal body complex protein FliE BER93_10385 IPR000067 Flagellar M-ring protein FliF BER93_10385 IPR006182 Secretory protein YscJ/FliF BER93_10385 IPR013556 Flagellar M-ring C-terminal BER93_10390 IPR000090 Flagellar motor switch protein FliG BER93_10390 IPR011002 Flagellar motor switch protein FliG, alpha-helical BER93_10390 IPR023087 BER93_10390 BER93_10390 IPR028263 Flagellar motor switch protein FliG, N-terminal domain BER93_10390 IPR032779 BER93_10390 BER93_10395 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BER93_10395 IPR038495 BER93_10395 BER93_10400 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_10400 IPR003593 AAA+ ATPase domain BER93_10400 IPR005714 ATPase, type III secretion system, FliI/YscN BER93_10400 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10405 IPR012823 Flagellar export FliJ BER93_10410 IPR021136 Flagellar hook-length control protein-like, C-terminal BER93_10410 IPR038610 BER93_10410 BER93_10415 IPR005503 Flagellar basal body-associated protein FliL BER93_10420 IPR001543 Surface presentation of antigen (SpoA) BER93_10420 IPR001689 Flagellar motor switch protein FliM BER93_10420 IPR028976 CheC-like domain BER93_10420 IPR036429 BER93_10420 BER93_10425 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb BER93_10425 IPR001543 Surface presentation of antigen (SpoA) BER93_10425 IPR012826 Flagellar motor switch FliN BER93_10425 IPR036429 BER93_10425 BER93_10430 IPR022781 Flagellar biosynthesis protein, FliO BER93_10435 IPR005837 Flagellar transport protein FliP BER93_10435 IPR005838 Type III secretion system inner membrane P protein BER93_10440 IPR002191 Bacterial export protein family 3 BER93_10445 IPR002010 Type III secretion system inner membrane R protein BER93_10445 IPR006303 Flagellar biosynthesis protein FliR BER93_10455 IPR000160 GGDEF domain BER93_10455 IPR029787 Nucleotide cyclase BER93_10460 IPR000160 GGDEF domain BER93_10460 IPR011123 Two component regulator three Y BER93_10460 IPR013783 Immunoglobulin-like fold BER93_10460 IPR015943 WD40/YVTN repeat-like-containing domain BER93_10460 IPR029787 Nucleotide cyclase BER93_10465 IPR006135 Type III secretion system substrate exporter BER93_10465 IPR006136 Type III exporter system, flagellar biosynthetic protein FlhB BER93_10465 IPR029025 Type III secretion system substrate exporter, C-terminal BER93_10470 IPR001712 Type III secretion system FHIPEP BER93_10470 IPR006301 Flagellar biosynthesis protein FlhA BER93_10475 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain BER93_10475 IPR003593 AAA+ ATPase domain BER93_10475 IPR020006 Signal-recognition particle (SRP)-type GTPase BER93_10475 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10480 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_10480 IPR025501 ATP binding protein MinD BER93_10480 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10485 IPR000943 RNA polymerase sigma-70 BER93_10485 IPR007624 RNA polymerase sigma-70 region 3 BER93_10485 IPR007627 RNA polymerase sigma-70 region 2 BER93_10485 IPR007630 RNA polymerase sigma-70 region 4 BER93_10485 IPR012845 RNA polymerase sigma factor, FliA/WhiG BER93_10485 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_10485 IPR013325 RNA polymerase sigma factor, region 2 BER93_10485 IPR014284 RNA polymerase sigma-70 like domain BER93_10485 IPR028617 RNA polymerase sigma factor FliA BER93_10490 IPR001789 Signal transduction response regulator, receiver domain BER93_10490 IPR011006 CheY-like superfamily BER93_10495 IPR007439 Chemotaxis phosphatase, CheZ BER93_10500 IPR002545 CheW-like protein BER93_10500 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_10500 IPR004105 Histidine kinase CheA-like, homodimeric domain BER93_10500 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_10500 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_10500 IPR036061 BER93_10500 BER93_10500 IPR036097 BER93_10500 BER93_10500 IPR036641 BER93_10500 BER93_10500 IPR036890 BER93_10500 BER93_10500 IPR037006 BER93_10500 BER93_10520 IPR002559 Transposase, IS4-like BER93_10520 IPR025161 Putative transposase IS4/IS5 family BER93_10555 IPR002559 Transposase, IS4-like BER93_10565 IPR000209 Peptidase S8/S53 domain BER93_10565 IPR005546 Autotransporter beta-domain BER93_10565 IPR006315 Outer membrane autotransporter barrel BER93_10565 IPR013425 Autotransporter-associated beta strand repeat BER93_10565 IPR015500 Peptidase S8, subtilisin-related BER93_10565 IPR036709 BER93_10565 BER93_10565 IPR036852 BER93_10565 BER93_10570 IPR001036 Acriflavin resistance protein BER93_10580 IPR002514 Transposase IS3/IS911family BER93_10580 IPR009057 Homeodomain-like BER93_10585 IPR002559 Transposase, IS4-like BER93_10595 IPR002559 Transposase, IS4-like BER93_10600 IPR032676 BER93_10600 BER93_10605 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site BER93_10605 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_10605 IPR004450 Threonine synthase-like BER93_10605 IPR029144 Threonine synthase, N-terminal BER93_10605 IPR036052 BER93_10605 BER93_10605 IPR037158 BER93_10605 BER93_10620 IPR002559 Transposase, IS4-like BER93_10620 IPR008490 Transposase InsH, N-terminal BER93_10625 IPR000870 Homoserine kinase BER93_10625 IPR006204 GHMP kinase N-terminal domain BER93_10625 IPR013750 GHMP kinase, C-terminal domain BER93_10625 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_10625 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_10625 IPR036554 BER93_10625 BER93_10630 IPR001048 Aspartate/glutamate/uridylate kinase BER93_10630 IPR001341 Aspartate kinase domain BER93_10630 IPR001342 Homoserine dehydrogenase, catalytic BER93_10630 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding BER93_10630 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I BER93_10630 IPR018042 Aspartate kinase, conserved site BER93_10630 IPR019811 Homoserine dehydrogenase, conserved site BER93_10630 IPR027795 GATS-like ACT domain BER93_10630 IPR036291 BER93_10630 BER93_10630 IPR036393 BER93_10630 BER93_10640 IPR002514 Transposase IS3/IS911family BER93_10640 IPR009057 Homeodomain-like BER93_10650 IPR002559 Transposase, IS4-like BER93_10650 IPR008490 Transposase InsH, N-terminal BER93_10655 IPR008866 Bacteriophage lambda, GpA BER93_10675 IPR002559 Transposase, IS4-like BER93_10675 IPR025161 Putative transposase IS4/IS5 family BER93_10680 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10685 IPR001584 Integrase, catalytic core BER93_10685 IPR012337 Ribonuclease H-like domain BER93_10685 IPR025948 HTH-like domain BER93_10685 IPR036397 BER93_10685 BER93_10690 IPR002514 Transposase IS3/IS911family BER93_10690 IPR009057 Homeodomain-like BER93_10695 IPR015590 Aldehyde dehydrogenase domain BER93_10695 IPR016161 Aldehyde/histidinol dehydrogenase BER93_10695 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_10695 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_10695 IPR029510 Aldehyde dehydrogenase, glutamic acid active site BER93_10700 IPR025241 Domain of unknown function DUF4190 BER93_10705 IPR013216 Methyltransferase type 11 BER93_10705 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_10710 IPR001295 Dihydroorotate dehydrogenase, conserved site BER93_10710 IPR005719 Dihydroorotate dehydrogenase, class 2 BER93_10710 IPR005720 Dihydroorotate dehydrogenase domain BER93_10710 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 BER93_10710 IPR013785 Aldolase-type TIM barrel BER93_10715 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase BER93_10715 IPR006094 FAD linked oxidase, N-terminal BER93_10715 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal BER93_10715 IPR016167 FAD-binding, type 2, subdomain 1 BER93_10715 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 BER93_10715 IPR036318 BER93_10715 BER93_10715 IPR036635 BER93_10715 BER93_10720 IPR000620 Drug/metabolite transporter BER93_10725 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_10725 IPR036938 BER93_10725 BER93_10730 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type BER93_10730 IPR011005 Dihydropteroate synthase-like BER93_10730 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial BER93_10735 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_10735 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_10735 IPR036097 BER93_10735 BER93_10735 IPR036890 BER93_10735 BER93_10740 IPR001789 Signal transduction response regulator, receiver domain BER93_10740 IPR002197 DNA binding HTH domain, Fis-type BER93_10740 IPR009057 Homeodomain-like BER93_10740 IPR011006 CheY-like superfamily BER93_10750 IPR000160 GGDEF domain BER93_10750 IPR001633 EAL domain BER93_10750 IPR003018 GAF domain BER93_10750 IPR029016 GAF domain-like BER93_10750 IPR029787 Nucleotide cyclase BER93_10750 IPR035919 BER93_10750 BER93_10770 IPR002559 Transposase, IS4-like BER93_10770 IPR008490 Transposase InsH, N-terminal BER93_10790 IPR001734 Sodium/solute symporter BER93_10790 IPR038377 BER93_10790 BER93_10795 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_10795 IPR002772 Glycoside hydrolase family 3 C-terminal domain BER93_10795 IPR017853 Glycoside hydrolase, superfamily BER93_10795 IPR036881 BER93_10795 BER93_10795 IPR036962 BER93_10795 BER93_10800 IPR008557 Protein of unknown function DUF839 BER93_10805 IPR003688 Ti-type conjugative transfer system, TraG-like BER93_10805 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_10830 IPR002477 Peptidoglycan binding-like BER93_10830 IPR036365 BER93_10830 BER93_10830 IPR036366 BER93_10830 BER93_10840 IPR001672 Phosphoglucose isomerase (PGI) BER93_10840 IPR018189 Phosphoglucose isomerase, conserved site BER93_10840 IPR023096 Phosphoglucose isomerase, C-terminal BER93_10845 IPR003190 Aspartate decarboxylase BER93_10845 IPR009010 Aspartate decarboxylase-like domain BER93_10850 IPR003721 Pantoate-beta-alanine ligase BER93_10850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_10855 IPR003700 Ketopantoate hydroxymethyltransferase BER93_10855 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_10860 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK BER93_10860 IPR035907 BER93_10860 BER93_10865 IPR002646 Poly A polymerase, head domain BER93_10865 IPR010206 Poly(A) polymerase I BER93_10865 IPR025866 Polymerase A arginine-rich C-terminal domain BER93_10865 IPR032828 BER93_10865 BER93_10875 IPR003801 GTP cyclohydrolase FolE2/MptA BER93_10880 IPR003663 Sugar/inositol transporter BER93_10880 IPR005828 General substrate transporter BER93_10880 IPR005829 Sugar transporter, conserved site BER93_10880 IPR036259 BER93_10880 BER93_10885 IPR001998 Xylose isomerase BER93_10885 IPR013452 Xylose isomerase, bacterial-type BER93_10885 IPR036237 BER93_10885 BER93_10890 IPR000577 BER93_10890 BER93_10890 IPR006000 Xylulokinase BER93_10890 IPR018483 Carbohydrate kinase, FGGY, conserved site BER93_10890 IPR018484 Carbohydrate kinase, FGGY, N-terminal BER93_10890 IPR018485 Carbohydrate kinase, FGGY, C-terminal BER93_10895 IPR008928 Six-hairpin glycosidase-like BER93_10895 IPR012341 Six-hairpin glycosidase BER93_10895 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_10895 IPR016518 Alpha-L-fucosidase BER93_10895 IPR027414 Glycosyl hydrolase family, N-terminal domain BER93_10900 IPR000322 Glycoside hydrolase, family 31 BER93_10900 IPR011013 Galactose mutarotase-like domain BER93_10900 IPR011658 PA14 BER93_10900 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_10900 IPR017853 Glycoside hydrolase, superfamily BER93_10900 IPR032513 BER93_10900 BER93_10900 IPR033403 BER93_10900 BER93_10905 IPR013529 Glycoside hydrolase, family 42, N-terminal BER93_10905 IPR017853 Glycoside hydrolase, superfamily BER93_10910 IPR005181 Domain of unknown function DUF303, acetylesterase putative BER93_10910 IPR008979 Galactose-binding domain-like BER93_10910 IPR025300 Beta-galactosidase jelly roll domain BER93_10910 IPR036514 BER93_10910 BER93_10915 IPR000531 TonB-dependent receptor, beta-barrel BER93_10915 IPR010104 Bacterial TonB-dependent receptor BER93_10915 IPR010916 TonB box, conserved site BER93_10915 IPR012910 TonB-dependent receptor, plug BER93_10915 IPR036942 BER93_10915 BER93_10915 IPR037066 BER93_10915 BER93_10920 IPR008490 Transposase InsH, N-terminal BER93_10935 IPR018712 Domain of unknown function DUF2235 BER93_10945 IPR000847 Transcription regulator HTH, LysR BER93_10945 IPR005119 LysR, substrate-binding BER93_10945 IPR036388 BER93_10945 BER93_10945 IPR036390 BER93_10945 BER93_10950 IPR000887 KDPG/KHG aldolase BER93_10950 IPR013785 Aldolase-type TIM barrel BER93_10950 IPR031338 BER93_10950 BER93_10955 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER93_10955 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER93_10955 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site BER93_10955 IPR029017 Enolase N-terminal domain-like BER93_10955 IPR029065 Enolase C-terminal domain-like BER93_10955 IPR036849 BER93_10955 BER93_10960 IPR005511 Senescence marker protein-30 (SMP-30) BER93_10960 IPR011042 Six-bladed beta-propeller, TolB-like BER93_10960 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER93_10965 IPR007729 2-keto-3-deoxy-galactonokinase BER93_10970 IPR000813 7Fe ferredoxin BER93_10970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_10970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_10970 IPR022569 Ferredoxin, C-terminal BER93_10980 IPR002220 DapA-like BER93_10980 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA BER93_10980 IPR013785 Aldolase-type TIM barrel BER93_10980 IPR020624 Dihydrodipicolinate synthetase, conserved site BER93_10980 IPR020625 Dihydrodipicolinate synthetase, active site BER93_10985 IPR016867 Glycine cleavage repressor GcvR BER93_10990 IPR009671 Regulator of ribonuclease activity B domain BER93_10990 IPR036701 BER93_10990 BER93_10995 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant BER93_10995 IPR036249 BER93_10995 BER93_11000 IPR002716 PIN domain BER93_11000 IPR003714 PhoH-like protein BER93_11000 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11000 IPR029060 PIN domain-like BER93_11010 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase BER93_11010 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase BER93_11010 IPR029056 Ribokinase-like BER93_11025 IPR000847 Transcription regulator HTH, LysR BER93_11025 IPR005119 LysR, substrate-binding BER93_11025 IPR036388 BER93_11025 BER93_11025 IPR036390 BER93_11025 BER93_11030 IPR003829 Pirin, N-terminal domain BER93_11030 IPR011051 RmlC-like cupin domain BER93_11030 IPR012093 Pirin BER93_11030 IPR014710 RmlC-like jelly roll fold BER93_11050 IPR003751 Carbon storage regulator BER93_11050 IPR036107 BER93_11050 BER93_11055 IPR002318 Alanine-tRNA ligase, class IIc BER93_11055 IPR003156 DHHA1 domain BER93_11055 IPR009000 Translation protein, beta-barrel domain BER93_11055 IPR012947 Threonyl/alanyl tRNA synthetase, SAD BER93_11055 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain BER93_11055 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain BER93_11055 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal BER93_11055 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria BER93_11060 IPR003783 Regulatory protein RecX BER93_11060 IPR036388 BER93_11060 BER93_11065 IPR003593 AAA+ ATPase domain BER93_11065 IPR013765 DNA recombination and repair protein RecA BER93_11065 IPR020584 DNA recombination/repair protein RecA, conserved site BER93_11065 IPR023400 DNA recombination and repair protein RecA, C-terminal BER93_11065 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11070 IPR006197 Peptidase S24, LexA-like BER93_11070 IPR006199 LexA repressor, DNA-binding domain BER93_11070 IPR006200 LexA repressor BER93_11070 IPR015927 Peptidase S24/S26A/S26B/S26C BER93_11070 IPR036286 BER93_11070 BER93_11070 IPR036388 BER93_11070 BER93_11070 IPR036390 BER93_11070 BER93_11075 IPR004147 UbiB domain BER93_11075 IPR010232 Probable protein kinase UbiB BER93_11075 IPR011009 Protein kinase-like domain BER93_11085 IPR000531 TonB-dependent receptor, beta-barrel BER93_11085 IPR036942 BER93_11085 BER93_11090 IPR036059 BER93_11090 BER93_11100 IPR011050 Pectin lyase fold/virulence factor BER93_11100 IPR012334 Pectin lyase fold BER93_11100 IPR032153 BER93_11100 BER93_11100 IPR039448 BER93_11100 BER93_11125 IPR002514 Transposase IS3/IS911family BER93_11125 IPR009057 Homeodomain-like BER93_11130 IPR001584 Integrase, catalytic core BER93_11130 IPR012337 Ribonuclease H-like domain BER93_11130 IPR036397 BER93_11130 BER93_11150 IPR021104 KfrA, N-terminal DNA-binding domain BER93_11155 IPR002104 Integrase, catalytic BER93_11155 IPR010998 Integrase, Lambda-type, N-terminal BER93_11155 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_11155 IPR013762 Integrase-like, catalytic core BER93_11175 IPR012910 TonB-dependent receptor, plug BER93_11175 IPR036942 BER93_11175 BER93_11180 IPR008136 CinA, C-terminal BER93_11180 IPR036653 BER93_11180 BER93_11190 IPR005225 Small GTP-binding protein domain BER93_11190 IPR006073 GTP binding domain BER93_11190 IPR016496 GTPase HflX BER93_11190 IPR025121 GTPase HflX N-terminal domain BER93_11190 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11190 IPR032305 BER93_11190 BER93_11190 IPR035647 BER93_11190 BER93_11195 IPR005001 Host factor Hfq BER93_11195 IPR010920 Like-Sm (LSM) domain BER93_11200 IPR018022 tRNA delta(2)-isopentenylpyrophosphate transferase BER93_11200 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11205 IPR000489 Pterin-binding BER93_11205 IPR006390 Dihydropteroate synthase BER93_11205 IPR011005 Dihydropteroate synthase-like BER93_11210 IPR000642 Peptidase M41 BER93_11210 IPR003593 AAA+ ATPase domain BER93_11210 IPR003959 ATPase, AAA-type, core BER93_11210 IPR003960 ATPase, AAA-type, conserved site BER93_11210 IPR005936 Peptidase, FtsH BER93_11210 IPR011546 Peptidase M41, FtsH extracellular BER93_11210 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11210 IPR037219 BER93_11210 BER93_11215 IPR002877 Ribosomal RNA methyltransferase FtsJ domain BER93_11215 IPR015507 Ribosomal RNA large subunit methyltransferase E BER93_11215 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_11220 IPR001890 RNA-binding, CRM domain BER93_11220 IPR017924 RNA-binding protein YhbY BER93_11220 IPR035920 BER93_11220 BER93_11225 IPR007523 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 BER93_11225 IPR036748 BER93_11225 BER93_11230 IPR002559 Transposase, IS4-like BER93_11230 IPR025161 Putative transposase IS4/IS5 family BER93_11235 IPR002559 Transposase, IS4-like BER93_11245 IPR002514 Transposase IS3/IS911family BER93_11245 IPR009057 Homeodomain-like BER93_11285 IPR021733 Protein of unknown function DUF3304 BER93_11295 IPR021733 Protein of unknown function DUF3304 BER93_11300 IPR021733 Protein of unknown function DUF3304 BER93_11305 IPR025391 Domain of unknown function DUF4123 BER93_11310 IPR018712 Domain of unknown function DUF2235 BER93_11315 IPR021733 Protein of unknown function DUF3304 BER93_11320 IPR021733 Protein of unknown function DUF3304 BER93_11325 IPR025391 Domain of unknown function DUF4123 BER93_11330 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_11330 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_11330 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_11330 IPR037026 BER93_11330 BER93_11335 IPR005532 Formylglycine-generating sulphatase enzyme domain BER93_11335 IPR016187 C-type lectin fold BER93_11345 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_11345 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_11345 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_11345 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_11345 IPR037026 BER93_11345 BER93_11350 IPR008024 YiaAB two helix BER93_11355 IPR010657 ImpA, N-terminal BER93_11355 IPR017740 Type VI secretion system-associated, ImpA BER93_11360 IPR006664 Outer membrane protein, bacterial BER93_11360 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_11360 IPR036737 BER93_11360 BER93_11365 IPR017748 Type VI secretion system-associated, BMAA0400 BER93_11365 IPR038225 BER93_11365 BER93_11370 IPR009612 ImcF-related BER93_11370 IPR010623 Domain of unknown function DUF1215 BER93_11370 IPR017731 Type VI secretion system, IcmF BER93_11370 IPR025743 ImcF-related, N-terminal domain BER93_11370 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11380 IPR008727 PAAR motif BER93_11385 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER93_11385 IPR039561 BER93_11385 BER93_11395 IPR006530 YD repeat BER93_11395 IPR031325 BER93_11395 BER93_11410 IPR014944 Toxin SymE-like BER93_11440 IPR011990 Tetratricopeptide-like helical domain BER93_11445 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_11445 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_11445 IPR037026 BER93_11445 BER93_11450 IPR025161 Putative transposase IS4/IS5 family BER93_11455 IPR002559 Transposase, IS4-like BER93_11460 IPR002559 Transposase, IS4-like BER93_11460 IPR008490 Transposase InsH, N-terminal BER93_11465 IPR002559 Transposase, IS4-like BER93_11465 IPR025161 Putative transposase IS4/IS5 family BER93_11480 IPR002559 Transposase, IS4-like BER93_11500 IPR000462 CDP-alcohol phosphatidyltransferase BER93_11500 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase BER93_11505 IPR000305 GIY-YIG nuclease superfamily BER93_11505 IPR001162 UvrC family homology region BER93_11505 IPR001943 UVR domain BER93_11505 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 BER93_11505 IPR004791 UvrABC system, subunit C BER93_11505 IPR010994 RuvA domain 2-like BER93_11505 IPR035901 BER93_11505 BER93_11505 IPR036876 BER93_11505 BER93_11505 IPR038476 BER93_11505 BER93_11510 IPR001258 NHL repeat BER93_11510 IPR011042 Six-bladed beta-propeller, TolB-like BER93_11510 IPR036249 BER93_11510 BER93_11520 IPR003329 Acylneuraminate cytidylyltransferase BER93_11520 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase BER93_11520 IPR029044 Nucleotide-diphospho-sugar transferases BER93_11525 IPR003758 Tetraacyldisaccharide 4'-kinase BER93_11525 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11530 IPR003439 ABC transporter-like BER93_11530 IPR003593 AAA+ ATPase domain BER93_11530 IPR011527 ABC transporter type 1, transmembrane domain BER93_11530 IPR011917 ABC transporter, lipid A export, MsbA BER93_11530 IPR017871 ABC transporter, conserved site BER93_11530 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11530 IPR036640 BER93_11530 BER93_11535 IPR003400 Biopolymer transport protein ExbD/TolR BER93_11540 IPR002898 MotA/TolQ/ExbB proton channel BER93_11545 IPR001279 Beta-lactamase-like BER93_11545 IPR004477 ComEC/Rec2-related protein BER93_11545 IPR004797 Competence protein ComEC/Rec2 BER93_11545 IPR025405 Domain of unknown function DUF4131 BER93_11545 IPR036866 BER93_11545 BER93_11550 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain BER93_11550 IPR036291 BER93_11550 BER93_11555 IPR003439 ABC transporter-like BER93_11555 IPR003593 AAA+ ATPase domain BER93_11555 IPR011924 Lipoprotein releasing system, ATP-binding protein BER93_11555 IPR017871 ABC transporter, conserved site BER93_11555 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11560 IPR003838 Permease FtsX-like BER93_11560 IPR011925 Lipoprotein releasing system, transmembrane protein, LolC/E family BER93_11560 IPR025857 MacB-like periplasmic core domain BER93_11570 IPR005631 Flavinator of succinate dehydrogenase BER93_11570 IPR036714 BER93_11570 BER93_11575 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein BER93_11575 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site BER93_11575 IPR009051 Alpha-helical ferredoxin BER93_11575 IPR012675 Beta-grasp domain BER93_11575 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_11575 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal BER93_11575 IPR036010 BER93_11575 BER93_11585 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site BER93_11585 IPR003953 FAD binding domain BER93_11585 IPR011281 Succinate dehydrogenase, flavoprotein subunit BER93_11585 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit BER93_11585 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal BER93_11585 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain BER93_11585 IPR036188 BER93_11585 BER93_11585 IPR037099 BER93_11585 BER93_11590 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit BER93_11590 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor BER93_11590 IPR034804 BER93_11590 BER93_11595 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit BER93_11595 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit BER93_11595 IPR034804 BER93_11595 BER93_11600 IPR006222 Glycine cleavage T-protein, N-terminal BER93_11600 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain BER93_11600 IPR017703 YgfZ/GcvT conserved site BER93_11605 IPR003439 ABC transporter-like BER93_11605 IPR003593 AAA+ ATPase domain BER93_11605 IPR008995 Molybdate/tungstate binding, C-terminal BER93_11605 IPR013611 Transport-associated OB, type 2 BER93_11605 IPR017871 ABC transporter, conserved site BER93_11605 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_11610 IPR001282 Glucose-6-phosphate dehydrogenase BER93_11610 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding BER93_11610 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal BER93_11610 IPR036291 BER93_11610 BER93_11615 IPR003836 Glucokinase BER93_11620 IPR005900 6-phosphogluconolactonase, DevB-type BER93_11620 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase BER93_11620 IPR037171 BER93_11620 BER93_11625 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase BER93_11625 IPR004786 6-phosphogluconate dehydratase BER93_11625 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site BER93_11625 IPR037237 BER93_11625 BER93_11630 IPR000887 KDPG/KHG aldolase BER93_11630 IPR013785 Aldolase-type TIM barrel BER93_11630 IPR031337 BER93_11630 BER93_11640 IPR009056 Cytochrome c-like domain BER93_11640 IPR036909 BER93_11640 BER93_11645 IPR009056 Cytochrome c-like domain BER93_11645 IPR036909 BER93_11645 BER93_11660 IPR002559 Transposase, IS4-like BER93_11660 IPR008490 Transposase InsH, N-terminal BER93_11680 IPR001789 Signal transduction response regulator, receiver domain BER93_11680 IPR011006 CheY-like superfamily BER93_11685 IPR000014 PAS domain BER93_11685 IPR001610 PAC motif BER93_11685 IPR001789 Signal transduction response regulator, receiver domain BER93_11685 IPR003018 GAF domain BER93_11685 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_11685 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_11685 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_11685 IPR011006 CheY-like superfamily BER93_11685 IPR013655 PAS fold-3 BER93_11685 IPR013656 PAS fold-4 BER93_11685 IPR029016 GAF domain-like BER93_11685 IPR035965 BER93_11685 BER93_11685 IPR036097 BER93_11685 BER93_11685 IPR036890 BER93_11685 BER93_11690 IPR003029 Ribosomal protein S1, RNA-binding domain BER93_11690 IPR006641 YqgF/RNase H-like domain BER93_11690 IPR010994 RuvA domain 2-like BER93_11690 IPR012337 Ribonuclease H-like domain BER93_11690 IPR012340 Nucleic acid-binding, OB-fold BER93_11690 IPR018974 Tex-like protein, N-terminal BER93_11690 IPR022967 RNA-binding domain, S1 BER93_11690 IPR023319 Tex-like protein, HTH domain BER93_11690 IPR023323 Tex-like domain BER93_11690 IPR032639 BER93_11690 BER93_11690 IPR037027 BER93_11690 BER93_11710 IPR007168 Phage shock protein, PspC, N-terminal BER93_11715 IPR000073 Alpha/beta hydrolase fold-1 BER93_11715 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit BER93_11715 IPR029058 Alpha/Beta hydrolase fold BER93_11720 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit BER93_11725 IPR000462 CDP-alcohol phosphatidyltransferase BER93_11730 IPR000086 NUDIX hydrolase domain BER93_11730 IPR003562 Mutator MutX protein BER93_11730 IPR015797 NUDIX hydrolase domain-like BER93_11730 IPR020084 NUDIX hydrolase, conserved site BER93_11735 IPR009659 Protein of unknown function DUF1249 BER93_11740 IPR005177 Bifunctional kinase-pyrophosphorylase BER93_11740 IPR026530 Phosphoenolpyruvate synthase regulatory protein BER93_11745 IPR000121 PEP-utilising enzyme, C-terminal BER93_11745 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding BER93_11745 IPR006319 Phosphoenolpyruvate synthase BER93_11745 IPR008279 PEP-utilising enzyme, mobile domain BER93_11745 IPR013815 ATP-grasp fold, subdomain 1 BER93_11745 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_11745 IPR018274 PEP-utilising enzyme, active site BER93_11745 IPR023151 PEP-utilising enzyme, conserved site BER93_11745 IPR036637 BER93_11745 BER93_11750 IPR006685 Mechanosensitive ion channel MscS BER93_11750 IPR006686 Mechanosensitive ion channel MscS, conserved site BER93_11750 IPR010920 Like-Sm (LSM) domain BER93_11750 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 BER93_11750 IPR011066 Mechanosensitive ion channel MscS, C-terminal BER93_11750 IPR023408 BER93_11750 BER93_11755 IPR012337 Ribonuclease H-like domain BER93_11755 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_11755 IPR022894 Oligoribonuclease BER93_11755 IPR036397 BER93_11755 BER93_11760 IPR002125 CMP/dCMP deaminase, zinc-binding BER93_11760 IPR016192 APOBEC/CMP deaminase, zinc-binding BER93_11760 IPR016193 Cytidine deaminase-like BER93_11760 IPR028883 tRNA-specific adenosine deaminase BER93_11765 IPR001367 Iron dependent repressor-like, metal binding and dimerisation domain BER93_11765 IPR022687 Iron dependent repressor, N-terminal BER93_11765 IPR022689 Iron dependent repressor, diptheria toxin type BER93_11765 IPR036388 BER93_11765 BER93_11765 IPR036390 BER93_11765 BER93_11765 IPR036421 BER93_11765 BER93_11770 IPR001046 NRAMP family BER93_11775 IPR000073 Alpha/beta hydrolase fold-1 BER93_11775 IPR029058 Alpha/Beta hydrolase fold BER93_11780 IPR002559 Transposase, IS4-like BER93_11780 IPR008490 Transposase InsH, N-terminal BER93_11815 IPR005053 MobA/MobL protein BER93_11820 IPR002514 Transposase IS3/IS911family BER93_11820 IPR009057 Homeodomain-like BER93_11840 IPR001584 Integrase, catalytic core BER93_11840 IPR012337 Ribonuclease H-like domain BER93_11840 IPR025948 HTH-like domain BER93_11840 IPR036397 BER93_11840 BER93_11845 IPR002514 Transposase IS3/IS911family BER93_11845 IPR009057 Homeodomain-like BER93_11850 IPR025103 Protein of unknown function DUF4011 BER93_11855 IPR002559 Transposase, IS4-like BER93_11855 IPR008490 Transposase InsH, N-terminal BER93_11865 IPR000965 Gamma-glutamyl phosphate reductase GPR BER93_11865 IPR012134 Glutamate-5-semialdehyde dehydrogenase BER93_11865 IPR015590 Aldehyde dehydrogenase domain BER93_11865 IPR016161 Aldehyde/histidinol dehydrogenase BER93_11865 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_11865 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_11865 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site BER93_11870 IPR001048 Aspartate/glutamate/uridylate kinase BER93_11870 IPR001057 Glutamate/acetylglutamate kinase BER93_11870 IPR002478 PUA domain BER93_11870 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase BER93_11870 IPR011529 Glutamate 5-kinase BER93_11870 IPR015947 PUA-like domain BER93_11870 IPR019797 Glutamate 5-kinase, conserved site BER93_11870 IPR036393 BER93_11870 BER93_11870 IPR036974 BER93_11870 BER93_11875 IPR005545 YCII-related BER93_11875 IPR011008 Dimeric alpha-beta barrel BER93_11880 IPR011051 RmlC-like cupin domain BER93_11880 IPR013096 Cupin 2, conserved barrel BER93_11880 IPR014710 RmlC-like jelly roll fold BER93_11885 IPR000362 Fumarate lyase family BER93_11885 IPR008948 L-Aspartase-like BER93_11885 IPR009049 Argininosuccinate lyase BER93_11885 IPR020557 Fumarate lyase, conserved site BER93_11885 IPR022761 Fumarate lyase, N-terminal BER93_11885 IPR024083 Fumarase/histidase, N-terminal BER93_11890 IPR000534 Semialdehyde dehydrogenase, NAD-binding BER93_11890 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 BER93_11890 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site BER93_11890 IPR036291 BER93_11890 BER93_11895 IPR000182 GNAT domain BER93_11895 IPR016181 Acyl-CoA N-acyltransferase BER93_11900 IPR001048 Aspartate/glutamate/uridylate kinase BER93_11900 IPR004662 Acetylglutamate kinase BER93_11900 IPR006855 Domain of unknown function DUF619 BER93_11900 IPR011242 N-acetylglutamate kinase, DUF619 domain-containing BER93_11900 IPR016181 Acyl-CoA N-acyltransferase BER93_11900 IPR036393 BER93_11900 BER93_11905 IPR002933 Peptidase M20 BER93_11905 IPR011650 Peptidase M20, dimerisation domain BER93_11905 IPR036264 BER93_11905 BER93_11910 IPR001518 Argininosuccinate synthase BER93_11910 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_11910 IPR018223 Argininosuccinate synthase, conserved site BER93_11910 IPR023434 Argininosuccinate synthase, type 1 subfamily BER93_11910 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body BER93_11915 IPR002082 Aspartate carbamoyltransferase BER93_11915 IPR006130 Aspartate/ornithine carbamoyltransferase BER93_11915 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain BER93_11915 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding BER93_11915 IPR036901 BER93_11915 BER93_11925 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding BER93_11925 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_11925 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR BER93_11925 IPR015803 Cysteine-tRNA ligase BER93_11925 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase BER93_11925 IPR032678 BER93_11925 BER93_11930 IPR003808 Fe-S metabolism associated domain, SufE-like BER93_11935 IPR010290 Transmembrane secretion effector BER93_11935 IPR036259 BER93_11935 BER93_11940 IPR000962 Zinc finger, DksA/TraR C4-type BER93_11940 IPR012784 RNA polymerase-binding transcription factor DksA BER93_11940 IPR037187 BER93_11940 BER93_11945 IPR002696 Putative membrane protein insertion efficiency factor BER93_11950 IPR002195 Dihydroorotase, conserved site BER93_11950 IPR006680 Amidohydrolase 1 BER93_11950 IPR011059 Metal-dependent hydrolase, composite domain BER93_11950 IPR032466 BER93_11950 BER93_11955 IPR011055 Duplicated hybrid motif BER93_11955 IPR016047 Peptidase M23 BER93_11960 IPR002559 Transposase, IS4-like BER93_11960 IPR008490 Transposase InsH, N-terminal BER93_11965 IPR012349 FMN-binding split barrel BER93_11965 IPR038725 BER93_11965 BER93_11975 IPR009003 Trypsin-like cysteine/serine peptidase domain BER93_11980 IPR002022 Pectate lyase/Amb allergen BER93_11980 IPR011050 Pectin lyase fold/virulence factor BER93_11980 IPR012334 Pectin lyase fold BER93_11985 IPR000743 Glycoside hydrolase, family 28 BER93_11985 IPR011050 Pectin lyase fold/virulence factor BER93_11985 IPR012334 Pectin lyase fold BER93_11995 IPR006346 2-phosphoglycolate phosphatase, prokaryotic BER93_11995 IPR006439 HAD hydrolase, subfamily IA BER93_11995 IPR023198 Phosphoglycolate phosphatase, domain 2 BER93_11995 IPR023214 HAD-like domain BER93_11995 IPR036412 BER93_11995 BER93_11995 IPR037512 BER93_11995 BER93_12000 IPR010233 Ubiquinone biosynthesis O-methyltransferase BER93_12000 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_12005 IPR006680 Amidohydrolase 1 BER93_12005 IPR011059 Metal-dependent hydrolase, composite domain BER93_12005 IPR032466 BER93_12005 BER93_12015 IPR001059 Translation elongation factor P/YeiP, central BER93_12015 IPR008991 Translation protein SH3-like domain BER93_12015 IPR011768 Translation elongation factor P BER93_12015 IPR012340 Nucleic acid-binding, OB-fold BER93_12015 IPR013185 Translation elongation factor, KOW-like BER93_12015 IPR013852 Translation elongation factor P/YeiP, conserved site BER93_12015 IPR014722 Ribosomal protein L2 domain 2 BER93_12015 IPR015365 Elongation factor P, C-terminal BER93_12015 IPR020599 Translation elongation factor P/YeiP BER93_12020 IPR003739 Lysine-2,3-aminomutase family BER93_12020 IPR007197 Radical SAM BER93_12020 IPR013785 Aldolase-type TIM barrel BER93_12020 IPR022462 Lysine-2,3-aminomutase-like BER93_12025 IPR001537 tRNA/rRNA methyltransferase, SpoU type BER93_12025 IPR004384 RNA methyltransferase TrmH, group 1 BER93_12025 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_12025 IPR029028 Alpha/beta knot methyltransferases BER93_12030 IPR000760 Inositol monophosphatase BER93_12030 IPR020550 Inositol monophosphatase, conserved site BER93_12030 IPR020583 Inositol monophosphatase, metal-binding site BER93_12030 IPR022337 Inositol monophosphatase, SuhB BER93_12035 IPR001189 Manganese/iron superoxide dismutase BER93_12035 IPR019831 Manganese/iron superoxide dismutase, N-terminal BER93_12035 IPR019832 Manganese/iron superoxide dismutase, C-terminal BER93_12035 IPR019833 Manganese/iron superoxide dismutase, binding site BER93_12035 IPR036314 BER93_12035 BER93_12035 IPR036324 BER93_12035 BER93_12040 IPR000026 Guanine-specific ribonuclease N1/T1 BER93_12040 IPR016191 Ribonuclease/ribotoxin BER93_12045 IPR000468 Barstar (barnase inhibitor) BER93_12045 IPR035905 BER93_12045 BER93_12050 IPR003439 ABC transporter-like BER93_12050 IPR003593 AAA+ ATPase domain BER93_12050 IPR017871 ABC transporter, conserved site BER93_12050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_12050 IPR032524 BER93_12050 BER93_12050 IPR032781 BER93_12050 BER93_12050 IPR037118 BER93_12050 BER93_12055 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site BER93_12055 IPR001650 Helicase, C-terminal BER93_12055 IPR003593 AAA+ ATPase domain BER93_12055 IPR005580 DbpA, RNA-binding BER93_12055 IPR011545 DEAD/DEAH box helicase domain BER93_12055 IPR012677 Nucleotide-binding, alpha-beta plait BER93_12055 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_12055 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_12060 IPR000836 Phosphoribosyltransferase domain BER93_12060 IPR005764 Adenine phosphoribosyl transferase BER93_12060 IPR029057 Phosphoribosyltransferase-like BER93_12065 IPR003846 Uncharacterised protein family UPF0061 BER93_12070 IPR013094 Alpha/beta hydrolase fold-3 BER93_12070 IPR029058 Alpha/Beta hydrolase fold BER93_12075 IPR004045 Glutathione S-transferase, N-terminal BER93_12075 IPR004046 Glutathione S-transferase, C-terminal BER93_12075 IPR036249 BER93_12075 BER93_12075 IPR036282 BER93_12075 BER93_12080 IPR002059 Cold-shock protein, DNA-binding BER93_12080 IPR011129 Cold shock protein BER93_12080 IPR012156 Cold shock, CspA BER93_12080 IPR012340 Nucleic acid-binding, OB-fold BER93_12080 IPR019844 Cold-shock conserved site BER93_12090 IPR009822 YaeQ BER93_12090 IPR011335 Restriction endonuclease type II-like BER93_12090 IPR038590 BER93_12090 BER93_12095 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like BER93_12095 IPR023166 HI0933 insert-like domain BER93_12095 IPR036188 BER93_12095 BER93_12100 IPR000014 PAS domain BER93_12100 IPR000160 GGDEF domain BER93_12100 IPR001633 EAL domain BER93_12100 IPR011006 CheY-like superfamily BER93_12100 IPR029787 Nucleotide cyclase BER93_12100 IPR035919 BER93_12100 BER93_12100 IPR035965 BER93_12100 BER93_12105 IPR001915 Peptidase M48 BER93_12105 IPR022919 Peptidase M48, protease HtpX, putative BER93_12110 IPR000924 Glutamyl/glutaminyl-tRNA synthetase BER93_12110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_12110 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain BER93_12110 IPR022380 Glutamyl-Q tRNA(Asp) synthetase BER93_12115 IPR002347 Glucose/ribitol dehydrogenase BER93_12115 IPR011283 Acetoacetyl-CoA reductase BER93_12115 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_12115 IPR036291 BER93_12115 BER93_12120 IPR007897 PHB accumulation regulatory BER93_12120 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR BER93_12120 IPR012909 PHA accumulation regulator DNA-binding, N-terminal BER93_12125 IPR002816 Pheromone shutdown, TraB BER93_12130 IPR012467 Protein of unknown function DUF1684 BER93_12135 IPR002099 DNA mismatch repair protein family BER93_12135 IPR013507 DNA mismatch repair protein, C-terminal BER93_12135 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_12135 IPR014762 DNA mismatch repair, conserved site BER93_12135 IPR014790 MutL, C-terminal, dimerisation BER93_12135 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_12135 IPR020667 DNA mismatch repair protein, MutL BER93_12135 IPR036890 BER93_12135 BER93_12135 IPR037198 BER93_12135 BER93_12140 IPR002508 Cell wall hydrolase/autolysin, catalytic BER93_12140 IPR021731 AMIN domain BER93_12145 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE BER93_12145 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_12150 IPR000631 YjeF C-terminal domain BER93_12150 IPR004443 YjeF N-terminal domain BER93_12150 IPR017953 Carbohydrate kinase, predicted, conserved site BER93_12150 IPR029056 Ribokinase-like BER93_12150 IPR030677 BER93_12150 BER93_12150 IPR036652 BER93_12150 BER93_12155 IPR004453 Epoxyqueuosine reductase QueG BER93_12155 IPR013542 Domain of unknown function DUF1730 BER93_12155 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_12160 IPR003753 Exonuclease VII, large subunit BER93_12160 IPR020579 Exonuclease VII, large subunit, C-terminal BER93_12160 IPR025824 OB-fold nucleic acid binding domain BER93_12175 IPR007462 Protein of unknown function DUF502 BER93_12180 IPR003744 Protein of unknown function DUF165 BER93_12190 IPR003313 AraC-type arabinose-binding/dimerisation domain BER93_12190 IPR037923 BER93_12190 BER93_12195 IPR010281 Protein of unknown function DUF885 BER93_12200 IPR003726 Homocysteine S-methyltransferase BER93_12200 IPR036589 BER93_12200 BER93_12205 IPR002293 Amino acid/polyamine transporter I BER93_12205 IPR004840 Amino acid permease, conserved site BER93_12205 IPR004841 Amino acid permease/ SLC12A domain BER93_12210 IPR019223 Domain of unknown function DUF2147 BER93_12215 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_12215 IPR002547 tRNA-binding domain BER93_12215 IPR004495 Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal BER93_12215 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding BER93_12215 IPR012340 Nucleic acid-binding, OB-fold BER93_12215 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_12215 IPR014758 Methionyl-tRNA synthetase BER93_12215 IPR015413 Methionyl/Leucyl tRNA synthetase BER93_12215 IPR023458 Methionine-tRNA ligase, type 1 BER93_12215 IPR029038 Methionyl-tRNA synthetase, Zn-domain BER93_12215 IPR033911 BER93_12215 BER93_12220 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial BER93_12220 IPR023214 HAD-like domain BER93_12220 IPR036412 BER93_12220 BER93_12225 IPR007202 4Fe-4S domain BER93_12225 IPR010207 Electron transport complex, RnfB BER93_12225 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_12240 IPR007627 RNA polymerase sigma-70 region 2 BER93_12240 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 BER93_12240 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_12240 IPR013325 RNA polymerase sigma factor, region 2 BER93_12240 IPR014284 RNA polymerase sigma-70 like domain BER93_12240 IPR036388 BER93_12240 BER93_12245 IPR018764 Anti-sigma K factor RskA BER93_12250 IPR005804 Fatty acid desaturase, type 1 BER93_12250 IPR015876 Fatty acid desaturase, type 1, core BER93_12255 IPR036188 BER93_12255 BER93_12260 IPR010775 Protein of unknown function DUF1365 BER93_12265 IPR003333 Mycolic acid cyclopropane synthase BER93_12265 IPR020803 Polyketide synthase, methyltransferase domain BER93_12265 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_12270 IPR021306 Protein of unknown function DUF2878 BER93_12275 IPR010721 Protein of unknown function DUF1295 BER93_12280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_12285 IPR006175 YjgF/Yer057p/UK114 family BER93_12285 IPR019897 YjgF-like protein, conserved site BER93_12285 IPR035959 BER93_12285 BER93_12295 IPR016181 Acyl-CoA N-acyltransferase BER93_12295 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD BER93_12295 IPR024320 Lysylphosphatidylglycerol synthetase, domain of unknown function DUF2156 BER93_12300 IPR010333 Bacterial virulence BER93_12300 IPR011225 Type IV secretory pathway, VirJ component BER93_12300 IPR029058 Alpha/Beta hydrolase fold BER93_12305 IPR019180 Oxidoreductase-like, N-terminal BER93_12315 IPR002559 Transposase, IS4-like BER93_12315 IPR008490 Transposase InsH, N-terminal BER93_12325 IPR011971 Conserved hypothetical protein CHP02284 BER93_12325 IPR012347 Ferritin-related BER93_12325 IPR019052 Domain of unknown function DUF2383 BER93_12330 IPR011701 Major facilitator superfamily BER93_12330 IPR036259 BER93_12330 BER93_12335 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal BER93_12335 IPR013785 Aldolase-type TIM barrel BER93_12340 IPR013988 PhnA protein, C-terminal BER93_12345 IPR002559 Transposase, IS4-like BER93_12345 IPR025161 Putative transposase IS4/IS5 family BER93_12350 IPR002524 Cation efflux protein BER93_12350 IPR027469 Cation efflux protein transmembrane domain BER93_12350 IPR036837 BER93_12350 BER93_12360 IPR004753 Cell shape determining protein MreB/Mrl BER93_12375 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal BER93_12375 IPR006358 Transcription elongation factor GreB BER93_12375 IPR018151 Transcription elongation factor, GreA/GreB, conserved site BER93_12375 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal BER93_12375 IPR023459 Transcription elongation factor GreA/GreB family BER93_12375 IPR028624 Transcription elongation factor GreA/GreB BER93_12375 IPR036805 BER93_12375 BER93_12375 IPR036953 BER93_12375 BER93_12380 IPR002559 Transposase, IS4-like BER93_12380 IPR025161 Putative transposase IS4/IS5 family BER93_12390 IPR005839 Methylthiotransferase BER93_12390 IPR005840 Ribosomal protein S12 methylthiotransferase RimO BER93_12390 IPR006638 Elongator protein 3/MiaB/NifB BER93_12390 IPR007197 Radical SAM BER93_12390 IPR013848 Methylthiotransferase, N-terminal BER93_12390 IPR020612 Methylthiotransferase, conserved site BER93_12390 IPR023404 Radical SAM, alpha/beta horseshoe BER93_12390 IPR038135 BER93_12390 BER93_12405 IPR002925 Dienelactone hydrolase BER93_12405 IPR029058 Alpha/Beta hydrolase fold BER93_12410 IPR001310 Histidine triad (HIT) protein BER93_12410 IPR026026 Histidine triad hydrolase, Hint-type BER93_12410 IPR036265 BER93_12410 BER93_12415 IPR011962 Deoxycytidine triphosphate deaminase BER93_12415 IPR029054 dUTPase-like BER93_12415 IPR036157 BER93_12415 BER93_12420 IPR000808 Mrp, conserved site BER93_12420 IPR019591 Mrp/NBP35 ATP-binding protein BER93_12420 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_12420 IPR033756 BER93_12420 BER93_12425 IPR000531 TonB-dependent receptor, beta-barrel BER93_12425 IPR012910 TonB-dependent receptor, plug BER93_12425 IPR013784 Carbohydrate-binding-like fold BER93_12425 IPR037066 BER93_12425 BER93_12430 IPR002937 Amine oxidase BER93_12430 IPR036188 BER93_12430 BER93_12435 IPR008753 Peptidase M13, N-terminal domain BER93_12435 IPR018497 Peptidase M13, C-terminal domain BER93_12435 IPR024079 Metallopeptidase, catalytic domain BER93_12440 IPR008753 Peptidase M13, N-terminal domain BER93_12440 IPR018497 Peptidase M13, C-terminal domain BER93_12440 IPR024079 Metallopeptidase, catalytic domain BER93_12445 IPR022764 Peptidase S54, rhomboid domain BER93_12445 IPR035952 BER93_12445 BER93_12455 IPR001100 BER93_12455 BER93_12455 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_12455 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site BER93_12455 IPR016156 FAD/NAD-linked reductase, dimerisation domain BER93_12455 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_12455 IPR036188 BER93_12455 BER93_12460 IPR006076 FAD dependent oxidoreductase BER93_12460 IPR036188 BER93_12460 BER93_12465 IPR007349 Domain of unknown function DUF418 BER93_12470 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain BER93_12475 IPR000064 Endopeptidase, NLPC/P60 domain BER93_12475 IPR038765 BER93_12475 BER93_12480 IPR000064 Endopeptidase, NLPC/P60 domain BER93_12480 IPR038765 BER93_12480 BER93_12485 IPR006683 Thioesterase superfamily BER93_12485 IPR029069 HotDog domain BER93_12490 IPR002514 Transposase IS3/IS911family BER93_12490 IPR009057 Homeodomain-like BER93_12495 IPR001584 Integrase, catalytic core BER93_12495 IPR012337 Ribonuclease H-like domain BER93_12495 IPR025948 HTH-like domain BER93_12495 IPR036397 BER93_12495 BER93_12505 IPR002559 Transposase, IS4-like BER93_12505 IPR008490 Transposase InsH, N-terminal BER93_12515 IPR002559 Transposase, IS4-like BER93_12530 IPR000847 Transcription regulator HTH, LysR BER93_12530 IPR005119 LysR, substrate-binding BER93_12530 IPR036388 BER93_12530 BER93_12530 IPR036390 BER93_12530 BER93_12535 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain BER93_12535 IPR002317 Serine-tRNA ligase, type1 BER93_12535 IPR010978 tRNA-binding arm BER93_12535 IPR015866 Serine-tRNA synthetase, type1, N-terminal BER93_12540 IPR006260 TonB, C-terminal BER93_12540 IPR037682 BER93_12540 BER93_12545 IPR006260 TonB, C-terminal BER93_12545 IPR037682 BER93_12545 BER93_12550 IPR001986 Enolpyruvate transferase domain BER93_12550 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase BER93_12550 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta BER93_12550 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site BER93_12550 IPR036968 BER93_12550 BER93_12555 IPR001086 Prephenate dehydratase BER93_12555 IPR002701 Chorismate mutase BER93_12555 IPR002912 ACT domain BER93_12555 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase BER93_12555 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain BER93_12555 IPR036263 BER93_12555 BER93_12555 IPR036979 BER93_12555 BER93_12560 IPR000192 Aminotransferase class V domain BER93_12560 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_12560 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_12560 IPR015424 Pyridoxal phosphate-dependent transferase BER93_12560 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site BER93_12560 IPR022278 Phosphoserine aminotransferase BER93_12565 IPR000572 Oxidoreductase, molybdopterin-binding domain BER93_12565 IPR022867 Sulphoxide reductase catalytic subunit YedY BER93_12565 IPR036374 BER93_12565 BER93_12570 IPR000843 Transcription regulator HTH, LacI BER93_12570 IPR010982 Lambda repressor-like, DNA-binding domain BER93_12570 IPR028082 Periplasmic binding protein-like I BER93_12575 IPR000032 Phosphocarrier HPr protein-like BER93_12575 IPR000121 PEP-utilising enzyme, C-terminal BER93_12575 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BER93_12575 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BER93_12575 IPR002178 PTS EIIA type-2 domain BER93_12575 IPR006318 Phosphoenolpyruvate-utilising enzyme BER93_12575 IPR008279 PEP-utilising enzyme, mobile domain BER93_12575 IPR008731 Phosphotransferase system, enzyme I N-terminal BER93_12575 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_12575 IPR016152 Phosphotransferase/anion transporter BER93_12575 IPR018274 PEP-utilising enzyme, active site BER93_12575 IPR023151 PEP-utilising enzyme, conserved site BER93_12575 IPR035895 BER93_12575 BER93_12575 IPR036618 BER93_12575 BER93_12575 IPR036637 BER93_12575 BER93_12580 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site BER93_12580 IPR011611 Carbohydrate kinase PfkB BER93_12580 IPR017583 Tagatose/fructose phosphokinase BER93_12580 IPR022463 Fructose 1-phosphate kinase BER93_12580 IPR029056 Ribokinase-like BER93_12585 IPR003353 Phosphotransferase system, fructose-specific IIB subunit BER93_12585 IPR003501 Phosphotransferase system, EIIB component, type 2/3 BER93_12585 IPR006327 Phosphotransferase system, fructose IIC component BER93_12585 IPR036095 BER93_12585 BER93_12590 IPR007049 Carbohydrate-selective porin OprB BER93_12590 IPR038673 BER93_12590 BER93_12595 IPR005665 Protein-export membrane protein SecF, bacterial BER93_12595 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER93_12595 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BER93_12595 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BER93_12600 IPR001036 Acriflavin resistance protein BER93_12600 IPR005791 Protein translocase subunit SecD BER93_12600 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BER93_12600 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BER93_12600 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BER93_12600 IPR027398 SecD export protein N-terminal TM domain BER93_12605 IPR003849 Preprotein translocase YajC BER93_12610 IPR002616 tRNA-guanine(15) transglycosylase-like BER93_12610 IPR004803 Queuine tRNA-ribosyltransferase BER93_12610 IPR036511 BER93_12610 BER93_12615 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA BER93_12615 IPR036100 BER93_12615 BER93_12620 IPR000485 AsnC-type HTH domain BER93_12620 IPR011008 Dimeric alpha-beta barrel BER93_12620 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER93_12620 IPR019887 Transcription regulator AsnC-type, C-terminal BER93_12620 IPR019888 Transcription regulator AsnC-type BER93_12620 IPR036388 BER93_12620 BER93_12620 IPR036390 BER93_12620 BER93_12625 IPR005814 Aminotransferase class-III BER93_12625 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_12625 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_12625 IPR015424 Pyridoxal phosphate-dependent transferase BER93_12630 IPR007577 Glycosyltransferase, DXD sugar-binding motif BER93_12630 IPR029044 Nucleotide-diphospho-sugar transferases BER93_12640 IPR005765 Uracil phosphoribosyl transferase BER93_12640 IPR029057 Phosphoribosyltransferase-like BER93_12640 IPR034332 BER93_12640 BER93_12645 IPR025161 Putative transposase IS4/IS5 family BER93_12650 IPR002559 Transposase, IS4-like BER93_12655 IPR001701 Glycoside hydrolase, family 9 BER93_12655 IPR004197 Glycoside hydrolase, family 9, N-terminal, Ig-like BER93_12655 IPR008928 Six-hairpin glycosidase-like BER93_12655 IPR012341 Six-hairpin glycosidase BER93_12655 IPR013783 Immunoglobulin-like fold BER93_12655 IPR014756 Immunoglobulin E-set BER93_12655 IPR018221 Glycoside hydrolase, family 9, active site BER93_12655 IPR033126 BER93_12655 BER93_12660 IPR000101 Gamma-glutamyltranspeptidase BER93_12660 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_12665 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_12665 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_12675 IPR001980 Coenzyme A biosynthesis protein BER93_12675 IPR004821 Cytidyltransferase-like domain BER93_12675 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_12680 IPR004398 RNA methyltransferase, RsmD BER93_12680 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_12685 IPR001404 Heat shock protein Hsp90 family BER93_12685 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_12685 IPR019805 Heat shock protein Hsp90, conserved site BER93_12685 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_12685 IPR020575 Heat shock protein Hsp90, N-terminal BER93_12685 IPR036890 BER93_12685 BER93_12685 IPR037196 BER93_12685 BER93_12695 IPR009656 PHB de-polymerase, C-terminal BER93_12695 IPR010915 Polyhydroxyalkanoate depolymerase BER93_12695 IPR029058 Alpha/Beta hydrolase fold BER93_12710 IPR002559 Transposase, IS4-like BER93_12710 IPR008490 Transposase InsH, N-terminal BER93_12715 IPR001584 Integrase, catalytic core BER93_12715 IPR012337 Ribonuclease H-like domain BER93_12715 IPR036397 BER93_12715 BER93_12725 IPR001991 Sodium:dicarboxylate symporter BER93_12725 IPR036458 BER93_12725 BER93_12730 IPR001952 Alkaline phosphatase BER93_12730 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha BER93_12730 IPR017850 Alkaline-phosphatase-like, core domain BER93_12735 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase BER93_12735 IPR012094 Lysidine-tRNA(Ile) synthetase BER93_12735 IPR012795 Lysidine-tRNA(Ile) synthetase, N-terminal BER93_12735 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal BER93_12735 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_12735 IPR015262 Lysidine-tRNA(Ile) synthetase, substrate-binding domain BER93_12740 IPR003761 Exonuclease VII, small subunit BER93_12740 IPR037004 BER93_12740 BER93_12745 IPR000092 Polyprenyl synthetase BER93_12745 IPR008949 Terpenoid synthase BER93_12745 IPR033749 BER93_12745 BER93_12755 IPR019109 Protein of unknown function DUF4870 BER93_12760 IPR002510 TldD/PmbA BER93_12760 IPR035068 BER93_12760 BER93_12760 IPR036059 BER93_12760 BER93_12765 IPR006839 Ribosome-associated, YjgA BER93_12765 IPR023153 PSPTO4464-like domain BER93_12770 IPR002510 TldD/PmbA BER93_12770 IPR025502 TldD BER93_12770 IPR035068 BER93_12770 BER93_12770 IPR036059 BER93_12770 BER93_12780 IPR011836 Conserved hypothetical protein CHP02099 BER93_12780 IPR025263 Domain of unknown function DUF3971 BER93_12780 IPR032712 BER93_12780 BER93_12785 IPR004659 Ribonuclease E/G BER93_12785 IPR012340 Nucleic acid-binding, OB-fold BER93_12785 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G BER93_12785 IPR022967 RNA-binding domain, S1 BER93_12790 IPR003697 Maf-like protein BER93_12790 IPR029001 Inosine triphosphate pyrophosphatase-like BER93_12795 IPR007497 Protein of unknown function DUF541 BER93_12800 IPR003742 SPOUT methyltransferase, predicted BER93_12800 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BER93_12800 IPR029028 Alpha/beta knot methyltransferases BER93_12805 IPR002514 Transposase IS3/IS911family BER93_12805 IPR009057 Homeodomain-like BER93_12820 IPR036869 BER93_12820 BER93_12825 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BER93_12830 IPR004821 Cytidyltransferase-like domain BER93_12830 IPR005248 Probable nicotinate-nucleotide adenylyltransferase BER93_12830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_12835 IPR005790 DNA polymerase III, delta subunit BER93_12835 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal BER93_12835 IPR010372 DNA polymerase III, delta BER93_12835 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_12840 IPR007485 Lipopolysaccharide assembly, LptE BER93_12845 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_12845 IPR002300 Aminoacyl-tRNA synthetase, class Ia BER93_12845 IPR002302 Leucine-tRNA ligase BER93_12845 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain BER93_12845 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding BER93_12845 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding BER93_12845 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_12845 IPR025709 Leucyl-tRNA synthetase, editing domain BER93_12850 IPR009339 Protein of unknown function DUF998 BER93_12855 IPR005746 Thioredoxin BER93_12855 IPR011990 Tetratricopeptide-like helical domain BER93_12855 IPR013766 Thioredoxin domain BER93_12855 IPR017937 Thioredoxin, conserved site BER93_12855 IPR036249 BER93_12855 BER93_12880 IPR008258 Lytic transglycosylase-like SLT domain BER93_12880 IPR023346 Lysozyme-like domain BER93_12890 IPR003522 Type III secretion system outer membrane pore YscC/HrcC BER93_12890 IPR004845 Type II secretion system GspD, conserved site BER93_12890 IPR004846 Type II/III secretion system BER93_12890 IPR005644 NolW-like BER93_12890 IPR038591 BER93_12890 BER93_12895 IPR002010 Type III secretion system inner membrane R protein BER93_12895 IPR006304 Type III secretion protein SpaR/YscT BER93_12900 IPR013392 Type III secretion protein HrpB7 BER93_12905 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_12905 IPR003593 AAA+ ATPase domain BER93_12905 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain BER93_12905 IPR005714 ATPase, type III secretion system, FliI/YscN BER93_12905 IPR013380 ATPase, type III secretion system, H+-transporting BER93_12905 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_12905 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_12910 IPR012842 Type III secretion system HrpE/YscL BER93_12910 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BER93_12915 IPR013393 Type III secretion protein HrpB4 BER93_12920 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ BER93_12920 IPR006182 Secretory protein YscJ/FliF BER93_12925 IPR013391 Type III secretion protein HrpB2 BER93_12930 IPR013394 Type III secretion system, HrpB1/HrpK BER93_12935 IPR006135 Type III secretion system substrate exporter BER93_12935 IPR006307 Type III exporter system, secretion apparatus protein BsaZ BER93_12935 IPR029025 Type III secretion system substrate exporter, C-terminal BER93_12940 IPR001712 Type III secretion system FHIPEP BER93_12940 IPR025505 FHIPEP conserved site BER93_12945 IPR013390 Type III secretion protein HpaP BER93_12950 IPR001543 Surface presentation of antigen (SpoA) BER93_12950 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO BER93_12950 IPR036429 BER93_12950 BER93_12955 IPR005773 Yop virulence translocation protein R BER93_12955 IPR005838 Type III secretion system inner membrane P protein BER93_12960 IPR002191 Bacterial export protein family 3 BER93_12960 IPR006306 Type III secretion protein HrpO BER93_12985 IPR010261 Tir chaperone protein (CesT) family BER93_12990 IPR004898 Pectate lyase, catalytic BER93_12990 IPR011050 Pectin lyase fold/virulence factor BER93_12990 IPR012334 Pectin lyase fold BER93_13015 IPR007211 Protein of unknown function DUF378 BER93_13020 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain BER93_13020 IPR029000 Cyclophilin-like domain BER93_13035 IPR010281 Protein of unknown function DUF885 BER93_13040 IPR002559 Transposase, IS4-like BER93_13050 IPR003439 ABC transporter-like BER93_13050 IPR003593 AAA+ ATPase domain BER93_13050 IPR011527 ABC transporter type 1, transmembrane domain BER93_13050 IPR017871 ABC transporter, conserved site BER93_13050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13050 IPR036640 BER93_13050 BER93_13060 IPR006153 Cation/H+ exchanger BER93_13060 IPR038770 BER93_13060 BER93_13065 IPR021860 Peptidase S12, Pab87-related, C-terminal BER93_13070 IPR002763 Protein of unknown function DUF72 BER93_13070 IPR036520 BER93_13070 BER93_13075 IPR000620 Drug/metabolite transporter BER93_13085 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_13085 IPR002942 RNA-binding S4 domain BER93_13085 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_13085 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_13085 IPR020103 Pseudouridine synthase, catalytic domain BER93_13085 IPR036986 BER93_13085 BER93_13095 IPR000014 PAS domain BER93_13095 IPR000160 GGDEF domain BER93_13095 IPR001610 PAC motif BER93_13095 IPR001633 EAL domain BER93_13095 IPR013655 PAS fold-3 BER93_13095 IPR029787 Nucleotide cyclase BER93_13095 IPR035919 BER93_13095 BER93_13095 IPR035965 BER93_13095 BER93_13100 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site BER93_13100 IPR001650 Helicase, C-terminal BER93_13100 IPR005580 DbpA, RNA-binding BER93_13100 IPR011545 DEAD/DEAH box helicase domain BER93_13100 IPR012677 Nucleotide-binding, alpha-beta plait BER93_13100 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_13100 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13100 IPR028618 ATP-dependent RNA helicase DeaD BER93_13110 IPR036986 BER93_13110 BER93_13125 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein BER93_13125 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain BER93_13130 IPR025091 Protein of unknown function DUF4019 BER93_13145 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site BER93_13145 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain BER93_13145 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding BER93_13145 IPR023546 Methylated-DNA--protein-cysteine methyltransferase BER93_13145 IPR036217 BER93_13145 BER93_13145 IPR036388 BER93_13145 BER93_13145 IPR036631 BER93_13145 BER93_13155 IPR004891 MerC mercury resistance protein BER93_13160 IPR000531 TonB-dependent receptor, beta-barrel BER93_13160 IPR012910 TonB-dependent receptor, plug BER93_13160 IPR036942 BER93_13160 BER93_13160 IPR037066 BER93_13160 BER93_13170 IPR006478 Formate dehydrogenase, alpha subunit BER93_13170 IPR006656 Molybdopterin oxidoreductase BER93_13170 IPR006657 Molydopterin dinucleotide-binding domain BER93_13170 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain BER93_13170 IPR009010 Aspartate decarboxylase-like domain BER93_13170 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BER93_13170 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BER93_13170 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding BER93_13170 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site BER93_13170 IPR036010 BER93_13170 BER93_13180 IPR000209 Peptidase S8/S53 domain BER93_13180 IPR002884 Proprotein convertase, P BER93_13180 IPR008979 Galactose-binding domain-like BER93_13180 IPR015500 Peptidase S8, subtilisin-related BER93_13180 IPR022398 Peptidase S8, subtilisin, His-active site BER93_13180 IPR023827 Peptidase S8, subtilisin, Asp-active site BER93_13180 IPR023828 Peptidase S8, subtilisin, Ser-active site BER93_13180 IPR036852 BER93_13180 BER93_13205 IPR001547 Glycoside hydrolase, family 5 BER93_13205 IPR017853 Glycoside hydrolase, superfamily BER93_13205 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_13215 IPR002481 Ferric-uptake regulator BER93_13215 IPR036388 BER93_13215 BER93_13215 IPR036390 BER93_13215 BER93_13220 IPR000924 Glutamyl/glutaminyl-tRNA synthetase BER93_13220 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_13220 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial BER93_13220 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding BER93_13220 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_13220 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain BER93_13220 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 BER93_13225 IPR022060 Protein of unknown function DUF3616 BER93_13245 IPR000668 Peptidase C1A, papain C-terminal BER93_13245 IPR038765 BER93_13245 BER93_13250 IPR007473 Ribosomal RNA large subunit methyltransferase J BER93_13250 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_13255 IPR000182 GNAT domain BER93_13255 IPR016181 Acyl-CoA N-acyltransferase BER93_13260 IPR001650 Helicase, C-terminal BER93_13260 IPR003711 CarD-like/TRCF domain BER93_13260 IPR004576 Transcription-repair coupling factor BER93_13260 IPR005118 Transcription-repair-coupling factor, C-terminal domain BER93_13260 IPR011545 DEAD/DEAH box helicase domain BER93_13260 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_13260 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13260 IPR036101 BER93_13260 BER93_13260 IPR037235 BER93_13260 BER93_13265 IPR000432 DNA mismatch repair protein MutS, C-terminal BER93_13265 IPR005748 DNA mismatch repair protein MutS, type 1 BER93_13265 IPR007695 DNA mismatch repair protein MutS-like, N-terminal BER93_13265 IPR007696 DNA mismatch repair protein MutS, core BER93_13265 IPR007860 DNA mismatch repair protein MutS, connector domain BER93_13265 IPR007861 DNA mismatch repair protein MutS, clamp BER93_13265 IPR016151 DNA mismatch repair protein MutS, N-terminal BER93_13265 IPR017261 DNA mismatch repair protein Msh6 BER93_13265 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13265 IPR036187 BER93_13265 BER93_13265 IPR036678 BER93_13265 BER93_13270 IPR000763 Catalase-peroxidase haem BER93_13270 IPR002016 Haem peroxidase, plant/fungal/bacterial BER93_13270 IPR010255 Haem peroxidase BER93_13270 IPR019793 Peroxidases heam-ligand binding site BER93_13270 IPR019794 Peroxidase, active site BER93_13280 IPR002559 Transposase, IS4-like BER93_13285 IPR002514 Transposase IS3/IS911family BER93_13285 IPR009057 Homeodomain-like BER93_13305 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site BER93_13305 IPR005952 Phosphoglycerate mutase 1 BER93_13305 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_13305 IPR029033 Histidine phosphatase superfamily BER93_13340 IPR003706 Carbon starvation protein CstA BER93_13340 IPR025299 CstA C-terminal domain BER93_13345 IPR007423 Protein of unknown function DUF466 BER93_13350 IPR006439 HAD hydrolase, subfamily IA BER93_13350 IPR023198 Phosphoglycolate phosphatase, domain 2 BER93_13350 IPR023214 HAD-like domain BER93_13350 IPR036412 BER93_13350 BER93_13355 IPR008537 Protein of unknown function DUF819 BER93_13365 IPR025877 MobA-like NTP transferase domain BER93_13365 IPR029044 Nucleotide-diphospho-sugar transferases BER93_13370 IPR003777 XdhC- CoxI BER93_13370 IPR027051 XdhC Rossmann domain BER93_13375 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding BER93_13375 IPR037165 BER93_13375 BER93_13380 IPR000160 GGDEF domain BER93_13380 IPR029787 Nucleotide cyclase BER93_13380 IPR033479 BER93_13380 BER93_13385 IPR000424 Primosome PriB/single-strand DNA-binding BER93_13385 IPR011344 Single-stranded DNA-binding protein BER93_13385 IPR012340 Nucleic acid-binding, OB-fold BER93_13395 IPR000092 Polyprenyl synthetase BER93_13395 IPR008949 Terpenoid synthase BER93_13395 IPR033749 BER93_13395 BER93_13400 IPR002925 Dienelactone hydrolase BER93_13400 IPR029058 Alpha/Beta hydrolase fold BER93_13405 IPR004101 Mur ligase, C-terminal BER93_13405 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase BER93_13405 IPR013221 Mur ligase, central BER93_13405 IPR018109 Folylpolyglutamate synthetase, conserved site BER93_13405 IPR036565 BER93_13405 BER93_13405 IPR036615 BER93_13405 BER93_13420 IPR000183 Ornithine/DAP/Arg decarboxylase BER93_13420 IPR001048 Aspartate/glutamate/uridylate kinase BER93_13420 IPR001341 Aspartate kinase domain BER93_13420 IPR002986 Diaminopimelate decarboxylase, LysA BER93_13420 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_13420 IPR011246 Bifunctional diaminopimelate decarboxylase/aspartate kinase BER93_13420 IPR018042 Aspartate kinase, conserved site BER93_13420 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal BER93_13420 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal BER93_13420 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site BER93_13420 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BER93_13420 IPR029066 PLP-binding barrel BER93_13420 IPR036393 BER93_13420 BER93_13430 IPR003719 Phenazine biosynthesis PhzF protein BER93_13435 IPR008816 Glycine zipper 2TM domain BER93_13440 IPR003718 OsmC/Ohr family BER93_13440 IPR015946 K homology domain-like, alpha/beta BER93_13440 IPR019904 Peroxiredoxin OsmC BER93_13440 IPR036102 BER93_13440 BER93_13445 IPR002082 Aspartate carbamoyltransferase BER93_13445 IPR006130 Aspartate/ornithine carbamoyltransferase BER93_13445 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain BER93_13445 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding BER93_13445 IPR036901 BER93_13445 BER93_13450 IPR005227 Resolvase, holliday junction-type, YqgF-like BER93_13450 IPR006641 YqgF/RNase H-like domain BER93_13450 IPR012337 Ribonuclease H-like domain BER93_13450 IPR037027 BER93_13450 BER93_13455 IPR003774 Protein of unknown function UPF0301 BER93_13465 IPR005019 Methyladenine glycosylase BER93_13465 IPR011257 DNA glycosylase BER93_13480 IPR001482 Type II secretion system protein E BER93_13480 IPR006321 Pilus retraction protein PilT BER93_13480 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13485 IPR001482 Type II secretion system protein E BER93_13485 IPR003593 AAA+ ATPase domain BER93_13485 IPR006321 Pilus retraction protein PilT BER93_13485 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13490 IPR001608 Alanine racemase, N-terminal BER93_13490 IPR011078 Uncharacterised protein family UPF0001 BER93_13490 IPR029066 PLP-binding barrel BER93_13495 IPR000304 Pyrroline-5-carboxylate reductase BER93_13495 IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like BER93_13495 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BER93_13495 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain BER93_13495 IPR036291 BER93_13495 BER93_13500 IPR000119 Histone-like bacterial DNA-binding protein BER93_13500 IPR010992 Integration host factor (IHF)-like DNA-binding domain BER93_13510 IPR024476 Protein of unknown function DUF3861 BER93_13515 IPR010835 Protein of unknown function DUF1439 BER93_13520 IPR001214 SET domain BER93_13525 IPR000944 Transcription regulator Rrf2-like BER93_13525 IPR014290 SUF system FeS cluster assembly, Rtf2-type regulator BER93_13525 IPR036388 BER93_13525 BER93_13525 IPR036390 BER93_13525 BER93_13530 IPR000825 SUF system FeS cluster assembly, SufBD BER93_13530 IPR010231 SUF system FeS cluster assembly, SufB BER93_13530 IPR037284 BER93_13530 BER93_13535 IPR003439 ABC transporter-like BER93_13535 IPR003593 AAA+ ATPase domain BER93_13535 IPR010230 FeS cluster assembly SUF system, ATPase SufC BER93_13535 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13540 IPR000825 SUF system FeS cluster assembly, SufBD BER93_13540 IPR011542 SUF system FeS cluster assembly, SufD BER93_13540 IPR037284 BER93_13540 BER93_13545 IPR000192 Aminotransferase class V domain BER93_13545 IPR010970 Cysteine desulfurase, SufS BER93_13545 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_13545 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_13545 IPR015424 Pyridoxal phosphate-dependent transferase BER93_13545 IPR016454 Cysteine desulfurase, NifS BER93_13545 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site BER93_13550 IPR000182 GNAT domain BER93_13550 IPR016181 Acyl-CoA N-acyltransferase BER93_13555 IPR017941 Rieske [2Fe-2S] iron-sulphur domain BER93_13555 IPR036922 BER93_13555 BER93_13560 IPR000531 TonB-dependent receptor, beta-barrel BER93_13560 IPR010105 TonB-dependent siderophore receptor BER93_13560 IPR012910 TonB-dependent receptor, plug BER93_13560 IPR036942 BER93_13560 BER93_13560 IPR037066 BER93_13560 BER93_13565 IPR005123 Oxoglutarate/iron-dependent dioxygenase BER93_13565 IPR006620 Prolyl 4-hydroxylase, alpha subunit BER93_13565 IPR023550 PKHD-type hydroxylase BER93_13570 IPR006597 Sel1-like BER93_13570 IPR011990 Tetratricopeptide-like helical domain BER93_13575 IPR002514 Transposase IS3/IS911family BER93_13575 IPR009057 Homeodomain-like BER93_13585 IPR003374 ApbE-like domain BER93_13590 IPR010282 Uncharacterised protein family HutD/Ves BER93_13590 IPR011051 RmlC-like cupin domain BER93_13590 IPR014710 RmlC-like jelly roll fold BER93_13595 IPR004509 Competence protein ComEA, helix-hairpin-helix domain BER93_13595 IPR010994 RuvA domain 2-like BER93_13600 IPR002933 Peptidase M20 BER93_13600 IPR011650 Peptidase M20, dimerisation domain BER93_13605 IPR007341 Transglycosylase-associated protein BER93_13610 IPR002575 Aminoglycoside phosphotransferase BER93_13610 IPR011009 Protein kinase-like domain BER93_13615 IPR005835 Nucleotidyl transferase BER93_13615 IPR029044 Nucleotide-diphospho-sugar transferases BER93_13625 IPR002611 IstB-like ATP-binding protein BER93_13625 IPR017788 DnaA regulatory inactivator Hda BER93_13625 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13630 IPR002549 Uncharacterised protein family UPF0118 BER93_13635 IPR018642 Protein of unknown function DUF2066 BER93_13640 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase BER93_13640 IPR010918 AIR synthase-related protein, C-terminal domain BER93_13640 IPR016188 PurM, N-terminal-like BER93_13640 IPR036676 BER93_13640 BER93_13640 IPR036921 BER93_13640 BER93_13645 IPR002376 Formyl transferase, N-terminal BER93_13645 IPR004607 Phosphoribosylglycinamide formyltransferase BER93_13645 IPR036477 BER93_13645 BER93_13650 IPR021457 Protein of unknown function DUF3108 BER93_13655 IPR021457 Protein of unknown function DUF3108 BER93_13670 IPR001986 Enolpyruvate transferase domain BER93_13670 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase BER93_13670 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta BER93_13670 IPR036968 BER93_13670 BER93_13675 IPR002634 BolA protein BER93_13675 IPR036065 BER93_13675 BER93_13680 IPR000644 CBS domain BER93_13680 IPR001347 Sugar isomerase (SIS) BER93_13680 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type BER93_13685 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase BER93_13685 IPR023214 HAD-like domain BER93_13685 IPR036412 BER93_13685 BER93_13690 IPR010664 Lipopolysaccharide assembly, LptC-related BER93_13690 IPR026265 Lipopolysaccharide export system protein LptC BER93_13695 IPR005653 Organic solvent tolerance-like, N-terminal BER93_13695 IPR014340 Lipopolysaccharide assembly, LptA BER93_13700 IPR003439 ABC transporter-like BER93_13700 IPR003593 AAA+ ATPase domain BER93_13700 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13700 IPR030921 BER93_13700 BER93_13700 IPR032823 BER93_13700 BER93_13705 IPR000394 RNA polymerase sigma factor 54 BER93_13705 IPR007046 RNA polymerase sigma factor 54, core-binding BER93_13705 IPR007634 RNA polymerase sigma factor 54, DNA-binding BER93_13705 IPR038709 BER93_13705 BER93_13710 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein BER93_13710 IPR036567 BER93_13710 BER93_13715 IPR002178 PTS EIIA type-2 domain BER93_13715 IPR016152 Phosphotransferase/anion transporter BER93_13720 IPR003755 HPr(Ser) kinase/phosphorylase BER93_13720 IPR011104 HPr kinase/phosphorylase, C-terminal BER93_13720 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal BER93_13720 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain like BER93_13725 IPR005337 ATPase, P-loop-containing BER93_13725 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13730 IPR004701 Phosphotransferase system, mannose-type IIA component BER93_13730 IPR036662 BER93_13730 BER93_13735 IPR000032 Phosphocarrier HPr protein-like BER93_13735 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BER93_13735 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BER93_13735 IPR035895 BER93_13735 BER93_13740 IPR000121 PEP-utilising enzyme, C-terminal BER93_13740 IPR006318 Phosphoenolpyruvate-utilising enzyme BER93_13740 IPR008279 PEP-utilising enzyme, mobile domain BER93_13740 IPR008731 Phosphotransferase system, enzyme I N-terminal BER93_13740 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_13740 IPR023151 PEP-utilising enzyme, conserved site BER93_13740 IPR024692 Phosphotransferase system, enzyme I BER93_13740 IPR036618 BER93_13740 BER93_13740 IPR036637 BER93_13740 BER93_13745 IPR000644 CBS domain BER93_13745 IPR006667 SLC41 divalent cation transporters, integral membrane domain BER93_13745 IPR006668 Magnesium transporter, MgtE intracellular domain BER93_13745 IPR006669 Magnesium transporter MgtE BER93_13745 IPR036739 BER93_13745 BER93_13745 IPR038048 BER93_13745 BER93_13745 IPR038076 BER93_13745 BER93_13750 IPR002514 Transposase IS3/IS911family BER93_13750 IPR009057 Homeodomain-like BER93_13770 IPR018712 Domain of unknown function DUF2235 BER93_13775 IPR003688 Ti-type conjugative transfer system, TraG-like BER93_13775 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13780 IPR003836 Glucokinase BER93_13785 IPR000531 TonB-dependent receptor, beta-barrel BER93_13785 IPR010104 Bacterial TonB-dependent receptor BER93_13785 IPR012910 TonB-dependent receptor, plug BER93_13785 IPR037066 BER93_13785 BER93_13790 IPR000933 Glycoside hydrolase, family 29 BER93_13790 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_13790 IPR016286 Alpha-L-fucosidase, metazoa-type BER93_13790 IPR017853 Glycoside hydrolase, superfamily BER93_13790 IPR031919 BER93_13790 BER93_13795 IPR001223 Glycoside hydrolase, family 18, catalytic domain BER93_13795 IPR011583 Chitinase II BER93_13795 IPR017853 Glycoside hydrolase, superfamily BER93_13795 IPR029070 Chitinase insertion domain BER93_13800 IPR008979 Galactose-binding domain-like BER93_13800 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal BER93_13800 IPR015883 Glycoside hydrolase family 20, catalytic core BER93_13800 IPR017853 Glycoside hydrolase, superfamily BER93_13800 IPR025705 Beta-hexosaminidase BER93_13800 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like BER93_13805 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich BER93_13805 IPR008979 Galactose-binding domain-like BER93_13805 IPR013783 Immunoglobulin-like fold BER93_13805 IPR017853 Glycoside hydrolase, superfamily BER93_13805 IPR036156 BER93_13805 BER93_13810 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_13810 IPR002772 Glycoside hydrolase family 3 C-terminal domain BER93_13810 IPR011658 PA14 BER93_13810 IPR013783 Immunoglobulin-like fold BER93_13810 IPR017853 Glycoside hydrolase, superfamily BER93_13810 IPR026891 Fibronectin type III-like domain BER93_13810 IPR036881 BER93_13810 BER93_13810 IPR036962 BER93_13810 BER93_13820 IPR002514 Transposase IS3/IS911family BER93_13820 IPR009057 Homeodomain-like BER93_13830 IPR024079 Metallopeptidase, catalytic domain BER93_13835 IPR002559 Transposase, IS4-like BER93_13840 IPR002559 Transposase, IS4-like BER93_13840 IPR008490 Transposase InsH, N-terminal BER93_13850 IPR001584 Integrase, catalytic core BER93_13850 IPR012337 Ribonuclease H-like domain BER93_13850 IPR025948 HTH-like domain BER93_13850 IPR036397 BER93_13850 BER93_13855 IPR002514 Transposase IS3/IS911family BER93_13855 IPR009057 Homeodomain-like BER93_13870 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal BER93_13870 IPR024571 ERAP1-like C-terminal domain BER93_13875 IPR001114 Adenylosuccinate synthetase BER93_13875 IPR018220 Adenylosuccinate synthase, active site BER93_13875 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13875 IPR033128 BER93_13875 BER93_13880 IPR019201 Protein of unknown function DUF2065 BER93_13885 IPR001107 Band 7 protein BER93_13885 IPR010200 HflC BER93_13885 IPR036013 BER93_13885 BER93_13890 IPR001107 Band 7 protein BER93_13890 IPR001972 Stomatin family BER93_13890 IPR010201 HflK BER93_13890 IPR036013 BER93_13890 BER93_13895 IPR001789 Signal transduction response regulator, receiver domain BER93_13895 IPR011006 CheY-like superfamily BER93_13900 IPR001623 DnaJ domain BER93_13900 IPR002939 Chaperone DnaJ, C-terminal BER93_13900 IPR008971 HSP40/DnaJ peptide-binding BER93_13900 IPR018253 DnaJ domain, conserved site BER93_13900 IPR036869 BER93_13900 BER93_13905 IPR002068 Alpha crystallin/Hsp20 domain BER93_13905 IPR008978 HSP20-like chaperone BER93_13910 IPR013740 Redoxin BER93_13910 IPR036249 BER93_13910 BER93_13915 IPR008331 Ferritin/DPS protein domain BER93_13915 IPR009078 Ferritin-like superfamily BER93_13915 IPR012347 Ferritin-related BER93_13915 IPR014490 Uncharacterised conserved protein UCP018063, ferritin fold BER93_13935 IPR002559 Transposase, IS4-like BER93_13935 IPR025161 Putative transposase IS4/IS5 family BER93_13940 IPR001584 Integrase, catalytic core BER93_13945 IPR002559 Transposase, IS4-like BER93_13950 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BER93_13950 IPR036452 BER93_13950 BER93_13955 IPR000531 TonB-dependent receptor, beta-barrel BER93_13955 IPR012910 TonB-dependent receptor, plug BER93_13955 IPR036942 BER93_13955 BER93_13960 IPR007400 PrpF protein BER93_13960 IPR012709 PrpF, AcnD-accessory BER93_13965 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel BER93_13965 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha BER93_13965 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent BER93_13965 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel BER93_13965 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 BER93_13965 IPR036008 BER93_13965 BER93_13970 IPR002020 Citrate synthase-like BER93_13970 IPR011278 2-methylcitrate synthase/citrate synthase type I BER93_13970 IPR016142 Citrate synthase-like, large alpha subdomain BER93_13970 IPR016143 Citrate synthase-like, small alpha subdomain BER93_13970 IPR019810 Citrate synthase active site BER93_13970 IPR024176 Citrate synthase, bacterial-type BER93_13970 IPR036969 BER93_13970 BER93_13975 IPR012695 Methylisocitrate lyase BER93_13975 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_13975 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site BER93_13980 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_13980 IPR002197 DNA binding HTH domain, Fis-type BER93_13980 IPR003593 AAA+ ATPase domain BER93_13980 IPR009057 Homeodomain-like BER93_13980 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal BER93_13980 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR BER93_13980 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_13980 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_13995 IPR002559 Transposase, IS4-like BER93_13995 IPR008490 Transposase InsH, N-terminal BER93_14010 IPR009875 PilZ domain BER93_14015 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14020 IPR003770 Uncharacterised protein family UPF0755, YceG-like BER93_14025 IPR005801 ADC synthase BER93_14025 IPR006805 Anthranilate synthase component I, N-terminal BER93_14025 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I BER93_14025 IPR015890 Chorismate binding, C-terminal BER93_14025 IPR019999 Anthranilate synthase component I - like BER93_14030 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_14030 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_14030 IPR016039 Thiolase-like BER93_14030 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 BER93_14030 IPR018201 Beta-ketoacyl synthase, active site BER93_14030 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_14035 IPR003231 Acyl carrier protein (ACP) BER93_14035 IPR006162 Phosphopantetheine attachment site BER93_14035 IPR009081 Acyl carrier protein-like BER93_14035 IPR036736 BER93_14035 BER93_14040 IPR002347 Glucose/ribitol dehydrogenase BER93_14040 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase BER93_14040 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_14040 IPR036291 BER93_14040 BER93_14045 IPR001227 Acyl transferase domain BER93_14045 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type BER93_14045 IPR014043 Acyl transferase BER93_14045 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BER93_14045 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BER93_14045 IPR020801 Polyketide synthase, acyl transferase domain BER93_14045 IPR024925 Malonyl CoA-acyl carrier protein transacylase BER93_14050 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 BER93_14050 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal BER93_14050 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_14050 IPR016039 Thiolase-like BER93_14055 IPR002677 Ribosomal protein L32p BER93_14055 IPR011332 Zinc-binding ribosomal protein BER93_14060 IPR003772 Protein of unknown function DUF177 BER93_14065 IPR003697 Maf-like protein BER93_14065 IPR029001 Inosine triphosphate pyrophosphatase-like BER93_14075 IPR001173 Glycosyltransferase 2-like BER93_14075 IPR029044 Nucleotide-diphospho-sugar transferases BER93_14080 IPR038731 BER93_14080 BER93_14085 IPR003593 AAA+ ATPase domain BER93_14085 IPR011703 ATPase, AAA-3 BER93_14085 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14090 IPR002881 Domain of unknown function DUF58 BER93_14095 IPR002931 Transglutaminase-like BER93_14095 IPR021878 Protein of unknown function DUF3488 BER93_14095 IPR038765 BER93_14095 BER93_14100 IPR004658 Outer membrane lipoprotein Slp BER93_14105 IPR001310 Histidine triad (HIT) protein BER93_14105 IPR019808 Histidine triad, conserved site BER93_14105 IPR036265 BER93_14105 BER93_14110 IPR000093 DNA recombination protein RecR BER93_14110 IPR006171 Toprim domain BER93_14110 IPR015967 Recombination protein RecR, conserved site BER93_14110 IPR023627 Recombination protein RecR BER93_14110 IPR023628 Recombination protein RecR, C4-type zinc finger BER93_14115 IPR004401 Nucleoid-associated protein YbaB BER93_14115 IPR036894 BER93_14115 BER93_14120 IPR001270 ClpA/B family BER93_14120 IPR003593 AAA+ ATPase domain BER93_14120 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal BER93_14120 IPR012763 DNA polymerase III, subunit gamma/ tau BER93_14120 IPR021029 DNA polymerase III, tau subunit, domain V BER93_14120 IPR022754 DNA polymerase III, gamma subunit, domain III BER93_14120 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14120 IPR038249 BER93_14120 BER93_14135 IPR003448 Molybdopterin biosynthesis MoaE BER93_14135 IPR036563 BER93_14135 BER93_14140 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 BER93_14140 IPR012675 Beta-grasp domain BER93_14140 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BER93_14145 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain BER93_14145 IPR023045 Molybdenum cofactor biosynthesis C BER93_14145 IPR036522 BER93_14145 BER93_14150 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site BER93_14150 IPR006638 Elongator protein 3/MiaB/NifB BER93_14150 IPR007197 Radical SAM BER93_14150 IPR010505 Molybdenum cofactor synthesis C-terminal BER93_14150 IPR013483 Molybdenum cofactor biosynthesis protein A BER93_14150 IPR013785 Aldolase-type TIM barrel BER93_14155 IPR001279 Beta-lactamase-like BER93_14155 IPR036866 BER93_14155 BER93_14160 IPR011009 Protein kinase-like domain BER93_14160 IPR022826 3-deoxy-D-manno-octulosonic acid kinase BER93_14165 IPR002201 Glycosyl transferase, family 9 BER93_14180 IPR001932 Protein phosphatase 2C (PP2C)-like domain BER93_14180 IPR036457 BER93_14180 BER93_14185 IPR006054 DNA polymerase III, epsilon subunit BER93_14185 IPR006309 DNA polymerase 3, epsilon subunit BER93_14185 IPR012337 Ribonuclease H-like domain BER93_14185 IPR013520 Exonuclease, RNase T/DNA polymerase III BER93_14185 IPR036397 BER93_14185 BER93_14190 IPR002156 Ribonuclease H domain BER93_14190 IPR012337 Ribonuclease H-like domain BER93_14190 IPR022892 Ribonuclease H BER93_14190 IPR036397 BER93_14190 BER93_14195 IPR016885 Uncharacterised conserved protein UCP028445 BER93_14195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_14200 IPR001279 Beta-lactamase-like BER93_14200 IPR017782 Hydroxyacylglutathione hydrolase BER93_14200 IPR032282 BER93_14200 BER93_14200 IPR036866 BER93_14200 BER93_14205 IPR008258 Lytic transglycosylase-like SLT domain BER93_14205 IPR018392 LysM domain BER93_14205 IPR023346 Lysozyme-like domain BER93_14205 IPR036779 BER93_14205 BER93_14215 IPR010663 Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase BER93_14215 IPR010979 Ribosomal protein S13-like, H2TH BER93_14215 IPR012319 DNA glycosylase/AP lyase, catalytic domain BER93_14215 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding BER93_14215 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site BER93_14215 IPR020629 Formamidopyrimidine-DNA glycosylase BER93_14215 IPR035937 BER93_14215 BER93_14220 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain BER93_14220 IPR011042 Six-bladed beta-propeller, TolB-like BER93_14220 IPR011659 WD40-like Beta Propeller BER93_14220 IPR029058 Alpha/Beta hydrolase fold BER93_14225 IPR004813 Oligopeptide transporter, OPT superfamily BER93_14225 IPR004814 Oligopeptide transporter HI_0561 BER93_14230 IPR022231 Protein of unknown function DUF3757 BER93_14235 IPR013976 Metal-dependent hydrolase HDOD BER93_14240 IPR002559 Transposase, IS4-like BER93_14255 IPR003141 Polymerase/histidinol phosphatase, N-terminal BER93_14255 IPR004013 PHP, C-terminal BER93_14255 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_14255 IPR004805 DNA polymerase III, alpha subunit BER93_14255 IPR011708 Bacterial DNA polymerase III, alpha subunit BER93_14255 IPR016195 Polymerase/histidinol phosphatase-like BER93_14255 IPR023073 DNA polymerase, error-prone BER93_14255 IPR029460 DNA polymerase, helix-hairpin-helix motif BER93_14260 IPR001126 DNA-repair protein, UmuC-like BER93_14265 IPR017166 Uncharacterised conserved protein UCP037290 BER93_14265 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14270 IPR006197 Peptidase S24, LexA-like BER93_14270 IPR006199 LexA repressor, DNA-binding domain BER93_14270 IPR006200 LexA repressor BER93_14270 IPR015927 Peptidase S24/S26A/S26B/S26C BER93_14270 IPR036286 BER93_14270 BER93_14270 IPR036388 BER93_14270 BER93_14270 IPR036390 BER93_14270 BER93_14280 IPR002559 Transposase, IS4-like BER93_14295 IPR018306 Bacteriophage T5, Orf172 DNA-binding BER93_14305 IPR001041 2Fe-2S ferredoxin-type domain BER93_14305 IPR002888 [2Fe-2S]-binding BER93_14305 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site BER93_14305 IPR012675 Beta-grasp domain BER93_14305 IPR036010 BER93_14305 BER93_14305 IPR036884 BER93_14305 BER93_14310 IPR002346 Molybdopterin dehydrogenase, FAD-binding BER93_14310 IPR005107 CO dehydrogenase flavoprotein, C-terminal BER93_14310 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 BER93_14310 IPR036318 BER93_14310 BER93_14310 IPR036683 BER93_14310 BER93_14315 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BER93_14315 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding BER93_14315 IPR036856 BER93_14315 BER93_14315 IPR037165 BER93_14315 BER93_14320 IPR002347 Glucose/ribitol dehydrogenase BER93_14320 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_14320 IPR036291 BER93_14320 BER93_14355 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14360 IPR002559 Transposase, IS4-like BER93_14360 IPR025161 Putative transposase IS4/IS5 family BER93_14365 IPR002559 Transposase, IS4-like BER93_14365 IPR008490 Transposase InsH, N-terminal BER93_14390 IPR005215 Trigger factor BER93_14390 IPR008880 Trigger factor, C-terminal domain BER93_14390 IPR008881 Trigger factor, ribosome-binding, bacterial BER93_14390 IPR027304 Trigger factor/SurA domain BER93_14390 IPR036611 BER93_14390 BER93_14390 IPR037041 BER93_14390 BER93_14395 IPR001907 ATP-dependent Clp protease proteolytic subunit BER93_14395 IPR018215 ClpP, active site BER93_14395 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BER93_14395 IPR029045 ClpP/crotonase-like domain BER93_14395 IPR033135 BER93_14395 BER93_14400 IPR003593 AAA+ ATPase domain BER93_14400 IPR003959 ATPase, AAA-type, core BER93_14400 IPR004487 Clp protease, ATP-binding subunit ClpX BER93_14400 IPR010603 Zinc finger, ClpX C4-type BER93_14400 IPR019489 Clp ATPase, C-terminal BER93_14400 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14400 IPR038366 BER93_14400 BER93_14405 IPR003111 Peptidase S16, lon N-terminal BER93_14405 IPR003593 AAA+ ATPase domain BER93_14405 IPR003959 ATPase, AAA-type, core BER93_14405 IPR004815 Lon protease, bacterial/eukaryotic-type BER93_14405 IPR008268 Peptidase S16, active site BER93_14405 IPR008269 Peptidase S16, Lon C-terminal BER93_14405 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_14405 IPR015947 PUA-like domain BER93_14405 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_14405 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14405 IPR027543 Lon protease, bacterial BER93_14410 IPR000119 Histone-like bacterial DNA-binding protein BER93_14410 IPR010992 Integration host factor (IHF)-like DNA-binding domain BER93_14410 IPR020816 Histone-like DNA-binding protein, conserved site BER93_14430 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type BER93_14430 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site BER93_14430 IPR027304 Trigger factor/SurA domain BER93_14455 IPR007197 Radical SAM BER93_14455 IPR013785 Aldolase-type TIM barrel BER93_14455 IPR024924 7-carboxy-7-deazaguanine synthase-like BER93_14455 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE BER93_14460 IPR011990 Tetratricopeptide-like helical domain BER93_14460 IPR014162 Tol-Pal system, YbgF BER93_14460 IPR032519 BER93_14460 BER93_14460 IPR034706 BER93_14460 BER93_14460 IPR039565 BER93_14460 BER93_14465 IPR006664 Outer membrane protein, bacterial BER93_14465 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_14465 IPR014169 Peptidoglycan-associated lipoprotein BER93_14465 IPR036737 BER93_14465 BER93_14465 IPR039001 BER93_14465 BER93_14470 IPR007195 TolB, N-terminal BER93_14470 IPR011042 Six-bladed beta-propeller, TolB-like BER93_14470 IPR011659 WD40-like Beta Propeller BER93_14470 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB BER93_14470 IPR036752 BER93_14470 BER93_14475 IPR014161 Tol-Pal system, TolA BER93_14480 IPR003400 Biopolymer transport protein ExbD/TolR BER93_14480 IPR014168 Biopolymer transport, TolR BER93_14485 IPR002898 MotA/TolQ/ExbB proton channel BER93_14485 IPR014163 Tol-Pal system, TolQ BER93_14490 IPR006683 Thioesterase superfamily BER93_14490 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family BER93_14490 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site BER93_14490 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase BER93_14490 IPR029069 HotDog domain BER93_14495 IPR003593 AAA+ ATPase domain BER93_14495 IPR004605 DNA helicase, Holliday junction RuvB type BER93_14495 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal BER93_14495 IPR008824 DNA helicase, Holliday junction RuvB type, N-terminal BER93_14495 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14495 IPR036388 BER93_14495 BER93_14495 IPR036390 BER93_14495 BER93_14500 IPR003855 K+ potassium transporter BER93_14500 IPR023051 Potassium uptake protein, low affinity, Kup BER93_14505 IPR000085 Bacterial DNA recombination protein RuvA BER93_14505 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 BER93_14505 IPR010994 RuvA domain 2-like BER93_14505 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal BER93_14505 IPR012340 Nucleic acid-binding, OB-fold BER93_14505 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial BER93_14505 IPR036267 BER93_14505 BER93_14510 IPR002176 Crossover junction endodeoxyribonuclease RuvC BER93_14510 IPR012337 Ribonuclease H-like domain BER93_14510 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site BER93_14510 IPR036397 BER93_14510 BER93_14515 IPR002876 Transcriptional regulator TACO1-like BER93_14515 IPR017856 Integrase, N-terminal zinc-binding domain-like BER93_14515 IPR026564 Transcriptional regulator TACO1-like, domain 3 BER93_14515 IPR029072 YebC-like BER93_14520 IPR029058 Alpha/Beta hydrolase fold BER93_14525 IPR000182 GNAT domain BER93_14525 IPR016181 Acyl-CoA N-acyltransferase BER93_14530 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb BER93_14530 IPR004115 GAD-like domain BER93_14530 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) BER93_14530 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type BER93_14530 IPR004524 Aspartate-tRNA ligase, class IIb, bacterial/mitochondrial-type BER93_14530 IPR012340 Nucleic acid-binding, OB-fold BER93_14530 IPR029351 GAD domain BER93_14535 IPR021381 Protein of unknown function DUF3011 BER93_14545 IPR002477 Peptidoglycan binding-like BER93_14545 IPR011970 Lytic murein transglycosylase BER93_14545 IPR023346 Lysozyme-like domain BER93_14545 IPR031304 BER93_14545 BER93_14545 IPR036365 BER93_14545 BER93_14545 IPR036366 BER93_14545 BER93_14550 IPR003439 ABC transporter-like BER93_14550 IPR003593 AAA+ ATPase domain BER93_14550 IPR017871 ABC transporter, conserved site BER93_14550 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14550 IPR032524 BER93_14550 BER93_14550 IPR032781 BER93_14550 BER93_14555 IPR000531 TonB-dependent receptor, beta-barrel BER93_14555 IPR010916 TonB box, conserved site BER93_14555 IPR012910 TonB-dependent receptor, plug BER93_14555 IPR036942 BER93_14555 BER93_14555 IPR037066 BER93_14555 BER93_14560 IPR002559 Transposase, IS4-like BER93_14570 IPR000531 TonB-dependent receptor, beta-barrel BER93_14570 IPR010916 TonB box, conserved site BER93_14570 IPR012910 TonB-dependent receptor, plug BER93_14570 IPR036942 BER93_14570 BER93_14570 IPR037066 BER93_14570 BER93_14575 IPR000531 TonB-dependent receptor, beta-barrel BER93_14575 IPR010916 TonB box, conserved site BER93_14575 IPR012910 TonB-dependent receptor, plug BER93_14575 IPR036942 BER93_14575 BER93_14575 IPR037066 BER93_14575 BER93_14580 IPR003148 Regulator of K+ conductance, N-terminal BER93_14580 IPR006153 Cation/H+ exchanger BER93_14580 IPR036291 BER93_14580 BER93_14580 IPR038770 BER93_14580 BER93_14590 IPR002559 Transposase, IS4-like BER93_14590 IPR008490 Transposase InsH, N-terminal BER93_14600 IPR008257 Renal dipeptidase family BER93_14600 IPR032466 BER93_14600 BER93_14610 IPR002293 Amino acid/polyamine transporter I BER93_14610 IPR004840 Amino acid permease, conserved site BER93_14610 IPR004841 Amino acid permease/ SLC12A domain BER93_14615 IPR002559 Transposase, IS4-like BER93_14615 IPR008490 Transposase InsH, N-terminal BER93_14620 IPR003660 HAMP linker domain BER93_14620 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_14620 IPR004090 Chemotaxis methyl-accepting receptor BER93_14620 IPR024478 4HB MCP domain BER93_14630 IPR000073 Alpha/beta hydrolase fold-1 BER93_14630 IPR002410 Peptidase S33 BER93_14630 IPR005945 Proline-specific peptidase BER93_14630 IPR029058 Alpha/Beta hydrolase fold BER93_14635 IPR000792 Transcription regulator LuxR, C-terminal BER93_14635 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain BER93_14635 IPR016032 Signal transduction response regulator, C-terminal effector BER93_14635 IPR036388 BER93_14635 BER93_14635 IPR036693 BER93_14635 BER93_14640 IPR002293 Amino acid/polyamine transporter I BER93_14645 IPR009003 Trypsin-like cysteine/serine peptidase domain BER93_14655 IPR002559 Transposase, IS4-like BER93_14670 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain BER93_14670 IPR016185 Pre-ATP-grasp domain BER93_14675 IPR009576 Biofilm formation YgiB BER93_14680 IPR007140 Protein of unknown function DUF350 BER93_14685 IPR019621 Protein of unknown function DUF2491 BER93_14695 IPR007157 PspA/IM30 BER93_14700 IPR019231 Protein of unknown function DUF2170 BER93_14710 IPR000659 Pyridoxamine 5'-phosphate oxidase BER93_14710 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain BER93_14710 IPR012349 FMN-binding split barrel BER93_14710 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal BER93_14710 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site BER93_14715 IPR000623 Shikimate kinase/Threonine synthase-like 1 BER93_14715 IPR023000 Shikimate kinase, conserved site BER93_14715 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14715 IPR031322 BER93_14715 BER93_14720 IPR016037 3-dehydroquinate synthase AroB BER93_14720 IPR030960 BER93_14720 BER93_14720 IPR030963 BER93_14720 BER93_14725 IPR008893 WGR domain BER93_14725 IPR036930 BER93_14725 BER93_14730 IPR000257 Uroporphyrinogen decarboxylase (URO-D) BER93_14730 IPR006361 Uroporphyrinogen decarboxylase HemE BER93_14730 IPR038071 BER93_14730 BER93_14735 IPR004638 Drug resistance transporter EmrB/QacA subfamily BER93_14735 IPR011701 Major facilitator superfamily BER93_14735 IPR036259 BER93_14735 BER93_14740 IPR002559 Transposase, IS4-like BER93_14740 IPR008490 Transposase InsH, N-terminal BER93_14745 IPR001789 Signal transduction response regulator, receiver domain BER93_14745 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_14745 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_14745 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_14745 IPR011006 CheY-like superfamily BER93_14745 IPR011110 Two component regulator propeller BER93_14745 IPR011123 Two component regulator three Y BER93_14745 IPR013783 Immunoglobulin-like fold BER93_14745 IPR015943 WD40/YVTN repeat-like-containing domain BER93_14745 IPR036097 BER93_14745 BER93_14745 IPR036890 BER93_14745 BER93_14750 IPR001789 Signal transduction response regulator, receiver domain BER93_14750 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_14750 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_14750 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_14750 IPR011006 CheY-like superfamily BER93_14750 IPR011110 Two component regulator propeller BER93_14750 IPR011123 Two component regulator three Y BER93_14750 IPR013783 Immunoglobulin-like fold BER93_14750 IPR015943 WD40/YVTN repeat-like-containing domain BER93_14750 IPR036097 BER93_14750 BER93_14750 IPR036890 BER93_14750 BER93_14770 IPR001789 Signal transduction response regulator, receiver domain BER93_14770 IPR011006 CheY-like superfamily BER93_14775 IPR000014 PAS domain BER93_14775 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_14775 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_14775 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_14775 IPR013656 PAS fold-4 BER93_14775 IPR035965 BER93_14775 BER93_14775 IPR036097 BER93_14775 BER93_14775 IPR036890 BER93_14775 BER93_14805 IPR009057 Homeodomain-like BER93_14805 IPR011990 Tetratricopeptide-like helical domain BER93_14805 IPR018060 DNA binding HTH domain, AraC-type BER93_14805 IPR018062 HTH domain AraC-type, conserved site BER93_14810 IPR001867 Signal transduction response regulator, C-terminal BER93_14810 IPR011006 CheY-like superfamily BER93_14810 IPR016032 Signal transduction response regulator, C-terminal effector BER93_14810 IPR036388 BER93_14810 BER93_14815 IPR008523 Lactobacillus phage LBR48, DUF805 BER93_14820 IPR003593 AAA+ ATPase domain BER93_14820 IPR004504 DNA repair protein RadA BER93_14820 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_14820 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_14820 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14825 IPR001478 PDZ domain BER93_14825 IPR007963 Peptidase M61, catalytic domain BER93_14825 IPR011716 Tetratricopeptide TPR-3 BER93_14825 IPR024191 Peptidase M61 BER93_14825 IPR036034 BER93_14825 BER93_14830 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes BER93_14830 IPR014210 Cytochrome o ubiquinol oxidase subunit IV BER93_14835 IPR000298 Cytochrome c oxidase subunit III domain BER93_14835 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle BER93_14835 IPR014206 Cytochrome o ubiquinol oxidase, subunit III BER93_14835 IPR035973 BER93_14835 BER93_14840 IPR000883 Cytochrome c oxidase subunit I BER93_14840 IPR014207 Cytochrome o ubiquinol oxidase, subunit I BER93_14840 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site BER93_14840 IPR036927 BER93_14840 BER93_14845 IPR002429 Cytochrome c oxidase subunit II C-terminal BER93_14845 IPR006333 Cytochrome o ubiquinol oxidase subunit II BER93_14845 IPR008972 Cupredoxin BER93_14845 IPR010514 COX aromatic rich motif BER93_14845 IPR036257 BER93_14845 BER93_14855 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase BER93_14860 IPR001872 Peptidase A8, signal peptidase II BER93_14865 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_14865 IPR002300 Aminoacyl-tRNA synthetase, class Ia BER93_14865 IPR002301 Isoleucine-tRNA ligase BER93_14865 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain BER93_14865 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding BER93_14865 IPR013155 Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding BER93_14865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_14865 IPR023585 Isoleucine-tRNA ligase, type 1 BER93_14870 IPR002606 Riboflavin kinase, bacterial BER93_14870 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_14870 IPR015864 FAD synthetase BER93_14870 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic BER93_14870 IPR023465 Riboflavin kinase domain BER93_14875 IPR004268 Flagellin assembly, membrane protein MviN BER93_14880 IPR002583 Ribosomal protein S20 BER93_14880 IPR036510 BER93_14880 BER93_14885 IPR006073 GTP binding domain BER93_14885 IPR006074 GTP1/OBG, conserved site BER93_14885 IPR006169 GTP1/OBG domain BER93_14885 IPR014100 GTP-binding protein Obg/CgtA BER93_14885 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14885 IPR035101 BER93_14885 BER93_14885 IPR036726 BER93_14885 BER93_14890 IPR001684 Ribosomal protein L27 BER93_14890 IPR018261 Ribosomal protein L27, conserved site BER93_14895 IPR001787 Ribosomal protein L21 BER93_14895 IPR018258 Ribosomal protein L21, conserved site BER93_14895 IPR028909 Ribosomal protein L21-like BER93_14895 IPR036164 BER93_14895 BER93_14900 IPR003439 ABC transporter-like BER93_14900 IPR004602 UvrABC system subunit A BER93_14900 IPR017871 ABC transporter, conserved site BER93_14900 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_14905 IPR029069 HotDog domain BER93_14910 IPR007410 DR1885-like metal-binding protein BER93_14910 IPR036182 BER93_14910 BER93_14915 IPR001753 Crotonase superfamily BER93_14915 IPR029045 ClpP/crotonase-like domain BER93_14920 IPR003703 Acyl-CoA thioesterase BER93_14920 IPR029069 HotDog domain BER93_14925 IPR018551 Domain of unknown function DUF2007 BER93_14940 IPR002048 EF-hand domain BER93_14940 IPR011992 EF-hand domain pair BER93_14940 IPR018247 EF-Hand 1, calcium-binding site BER93_14945 IPR007471 Arginine-tRNA-protein transferase, N-terminal BER93_14945 IPR007472 Arginine-tRNA-protein transferase, C-terminal BER93_14945 IPR016181 Acyl-CoA N-acyltransferase BER93_14945 IPR017138 Arginine-tRNA-protein transferase, predicted, prokaryotic BER93_14950 IPR005135 Endonuclease/exonuclease/phosphatase BER93_14950 IPR036691 BER93_14950 BER93_14955 IPR002559 Transposase, IS4-like BER93_14955 IPR008490 Transposase InsH, N-terminal BER93_14970 IPR002514 Transposase IS3/IS911family BER93_14970 IPR009057 Homeodomain-like BER93_14975 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain BER93_14975 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BER93_14975 IPR005862 Phosphoribosylglycinamide formyltransferase 2 BER93_14975 IPR011054 Rudiment single hybrid motif BER93_14975 IPR013815 ATP-grasp fold, subdomain 1 BER93_14975 IPR016185 Pre-ATP-grasp domain BER93_14980 IPR001107 Band 7 protein BER93_14980 IPR036013 BER93_14980 BER93_14990 IPR010985 Ribbon-helix-helix BER93_14990 IPR013321 Arc-type ribbon-helix-helix BER93_14995 IPR002559 Transposase, IS4-like BER93_15000 IPR003709 Peptidase M15B/M15C BER93_15000 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER93_15005 IPR003265 HhH-GPD domain BER93_15005 IPR011257 DNA glycosylase BER93_15010 IPR006696 Protein of unknown function DUF423 BER93_15020 IPR000792 Transcription regulator LuxR, C-terminal BER93_15020 IPR001789 Signal transduction response regulator, receiver domain BER93_15020 IPR011006 CheY-like superfamily BER93_15020 IPR016032 Signal transduction response regulator, C-terminal effector BER93_15025 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain BER93_15025 IPR036890 BER93_15025 BER93_15030 IPR000182 GNAT domain BER93_15030 IPR016181 Acyl-CoA N-acyltransferase BER93_15030 IPR016890 Uncharacterised conserved protein UCP028520 BER93_15035 IPR005526 Septum formation inhibitor MinC, C-terminal BER93_15035 IPR007874 Septum formation inhibitor MinC, N-terminal BER93_15035 IPR013033 Septum formation inhibitor MinC BER93_15035 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal BER93_15035 IPR036145 BER93_15035 BER93_15035 IPR038061 BER93_15035 BER93_15040 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_15040 IPR010223 ATP binding protein MinD, bacterial-type BER93_15040 IPR025501 ATP binding protein MinD BER93_15040 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15045 IPR005527 Septum formation topological specificity factor MinE BER93_15045 IPR036707 BER93_15045 BER93_15055 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_15055 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_15055 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_15055 IPR036097 BER93_15055 BER93_15055 IPR036890 BER93_15055 BER93_15060 IPR001789 Signal transduction response regulator, receiver domain BER93_15060 IPR001867 Signal transduction response regulator, C-terminal BER93_15060 IPR011006 CheY-like superfamily BER93_15060 IPR016032 Signal transduction response regulator, C-terminal effector BER93_15060 IPR036388 BER93_15060 BER93_15070 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_15070 IPR036938 BER93_15070 BER93_15075 IPR000917 Sulfatase BER93_15075 IPR012549 Domain of unknown function DUF1705 BER93_15075 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha BER93_15075 IPR017850 Alkaline-phosphatase-like, core domain BER93_15095 IPR003437 Glycine cleavage system P protein, homodimeric BER93_15095 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_15095 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_15095 IPR015424 Pyridoxal phosphate-dependent transferase BER93_15095 IPR020581 Glycine cleavage system P protein BER93_15100 IPR002226 Catalase haem-binding site BER93_15100 IPR010582 Catalase immune-responsive domain BER93_15100 IPR011614 Catalase core domain BER93_15100 IPR018028 Catalase, mono-functional, haem-containing BER93_15100 IPR020835 Catalase-like domain BER93_15100 IPR024708 Catalase active site BER93_15100 IPR024712 Catalase, mono-functional, haem-containing, clade 2 BER93_15100 IPR029062 Class I glutamine amidotransferase-like BER93_15100 IPR037060 BER93_15100 BER93_15105 IPR002559 Transposase, IS4-like BER93_15105 IPR025161 Putative transposase IS4/IS5 family BER93_15110 IPR000014 PAS domain BER93_15110 IPR009057 Homeodomain-like BER93_15110 IPR013656 PAS fold-4 BER93_15110 IPR018060 DNA binding HTH domain, AraC-type BER93_15110 IPR018062 HTH domain AraC-type, conserved site BER93_15110 IPR020449 Transcription regulator HTH, AraC- type BER93_15110 IPR035965 BER93_15110 BER93_15120 IPR002559 Transposase, IS4-like BER93_15140 IPR002559 Transposase, IS4-like BER93_15140 IPR008490 Transposase InsH, N-terminal BER93_15150 IPR005000 HpcH/HpaI aldolase/citrate lyase domain BER93_15150 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_15155 IPR000531 TonB-dependent receptor, beta-barrel BER93_15155 IPR010105 TonB-dependent siderophore receptor BER93_15155 IPR012910 TonB-dependent receptor, plug BER93_15155 IPR036942 BER93_15155 BER93_15155 IPR037066 BER93_15155 BER93_15165 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal BER93_15165 IPR022770 Ferric iron reductase FhuF domain BER93_15170 IPR011701 Major facilitator superfamily BER93_15170 IPR036259 BER93_15170 BER93_15175 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal BER93_15175 IPR022770 Ferric iron reductase FhuF domain BER93_15180 IPR000183 Ornithine/DAP/Arg decarboxylase BER93_15180 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_15180 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal BER93_15180 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal BER93_15180 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BER93_15180 IPR029066 PLP-binding barrel BER93_15185 IPR000531 TonB-dependent receptor, beta-barrel BER93_15185 IPR010101 TonB-dependent vitamin B12 transporter BtuB BER93_15185 IPR012910 TonB-dependent receptor, plug BER93_15185 IPR036942 BER93_15185 BER93_15185 IPR037066 BER93_15185 BER93_15195 IPR001270 ClpA/B family BER93_15195 IPR003593 AAA+ ATPase domain BER93_15195 IPR003959 ATPase, AAA-type, core BER93_15195 IPR004176 Clp, N-terminal BER93_15195 IPR017730 Chaperonin ClpB BER93_15195 IPR018368 ClpA/B, conserved site 1 BER93_15195 IPR019489 Clp ATPase, C-terminal BER93_15195 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15195 IPR028299 ClpA/B, conserved site 2 BER93_15195 IPR036628 BER93_15195 BER93_15220 IPR025391 Domain of unknown function DUF4123 BER93_15245 IPR025391 Domain of unknown function DUF4123 BER93_15250 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BER93_15250 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BER93_15250 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BER93_15250 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BER93_15250 IPR037026 BER93_15250 BER93_15255 IPR001584 Integrase, catalytic core BER93_15255 IPR012337 Ribonuclease H-like domain BER93_15255 IPR025948 HTH-like domain BER93_15255 IPR036397 BER93_15255 BER93_15260 IPR002514 Transposase IS3/IS911family BER93_15260 IPR009057 Homeodomain-like BER93_15280 IPR002559 Transposase, IS4-like BER93_15280 IPR008490 Transposase InsH, N-terminal BER93_15285 IPR036890 BER93_15285 BER93_15310 IPR010539 Bax inhibitor-1 BER93_15315 IPR002559 Transposase, IS4-like BER93_15315 IPR008490 Transposase InsH, N-terminal BER93_15320 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site BER93_15320 IPR024084 Isopropylmalate dehydrogenase-like domain BER93_15325 IPR003779 Carboxymuconolactone decarboxylase-like BER93_15325 IPR004675 Alkylhydroperoxidase AhpD core BER93_15325 IPR029032 AhpD-like BER93_15330 IPR002109 Glutaredoxin BER93_15330 IPR011767 Glutaredoxin active site BER93_15330 IPR011900 Glutaredoxin, GrxC BER93_15330 IPR014025 Glutaredoxin subgroup BER93_15330 IPR036249 BER93_15330 BER93_15340 IPR001915 Peptidase M48 BER93_15340 IPR011990 Tetratricopeptide-like helical domain BER93_15340 IPR030873 BER93_15340 BER93_15345 IPR001789 Signal transduction response regulator, receiver domain BER93_15345 IPR001867 Signal transduction response regulator, C-terminal BER93_15345 IPR011006 CheY-like superfamily BER93_15345 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB BER93_15345 IPR016032 Signal transduction response regulator, C-terminal effector BER93_15345 IPR036388 BER93_15345 BER93_15350 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_15350 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_15350 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_15350 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR BER93_15350 IPR021766 Protein of unknown function DUF3329 BER93_15350 IPR035965 BER93_15350 BER93_15350 IPR036097 BER93_15350 BER93_15350 IPR036890 BER93_15350 BER93_15355 IPR003414 Polyphosphate kinase BER93_15355 IPR024953 Polyphosphate kinase middle domain BER93_15355 IPR025198 Polyphosphate kinase N-terminal domain BER93_15355 IPR025200 Polyphosphate kinase C-terminal domain BER93_15355 IPR036830 BER93_15355 BER93_15355 IPR036832 BER93_15355 BER93_15360 IPR003695 Ppx/GppA phosphatase BER93_15360 IPR022371 Exopolyphosphatase BER93_15360 IPR030673 BER93_15360 BER93_15370 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BER93_15370 IPR036938 BER93_15370 BER93_15375 IPR004843 Calcineurin-like phosphoesterase domain, apaH type BER93_15375 IPR010138 UDP-2,3-diacylglucosamine hydrolase BER93_15375 IPR029052 Metallo-dependent phosphatase-like BER93_15385 IPR024079 Metallopeptidase, catalytic domain BER93_15395 IPR007402 Protein of unknown function DUF455 BER93_15395 IPR009078 Ferritin-like superfamily BER93_15395 IPR011197 Uncharacterised conserved protein UCP012318 BER93_15400 IPR005854 Amidophosphoribosyl transferase BER93_15400 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_15400 IPR029057 Phosphoribosyltransferase-like BER93_15405 IPR003825 Colicin V production, CvpA BER93_15410 IPR007730 Sporulation-related domain BER93_15410 IPR036680 BER93_15410 BER93_15415 IPR001645 Folylpolyglutamate synthetase BER93_15415 IPR004101 Mur ligase, C-terminal BER93_15415 IPR013221 Mur ligase, central BER93_15415 IPR036565 BER93_15415 BER93_15415 IPR036615 BER93_15415 BER93_15420 IPR001611 Leucine-rich repeat BER93_15420 IPR003591 Leucine-rich repeat, typical subtype BER93_15420 IPR032675 BER93_15420 BER93_15435 IPR002559 Transposase, IS4-like BER93_15435 IPR008490 Transposase InsH, N-terminal BER93_15440 IPR008313 Uncharacterised conserved protein UCP028846 BER93_15440 IPR008928 Six-hairpin glycosidase-like BER93_15440 IPR012341 Six-hairpin glycosidase BER93_15445 IPR005887 Alpha-1,2-mannosidase, putative BER93_15445 IPR008928 Six-hairpin glycosidase-like BER93_15445 IPR012939 Glycosyl hydrolase family 92 BER93_15445 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup BER93_15450 IPR001944 Glycoside hydrolase, family 35 BER93_15450 IPR008979 Galactose-binding domain-like BER93_15450 IPR017853 Glycoside hydrolase, superfamily BER93_15450 IPR019801 Glycoside hydrolase, family 35, conserved site BER93_15450 IPR026283 Beta-galactosidase 1-like BER93_15450 IPR031330 BER93_15450 BER93_15465 IPR000719 Protein kinase domain BER93_15465 IPR011009 Protein kinase-like domain BER93_15465 IPR017441 Protein kinase, ATP binding site BER93_15495 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_15495 IPR003356 DNA methylase, adenine-specific BER93_15495 IPR004546 Restriction endonuclease, type I, HsdM BER93_15495 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain BER93_15495 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_15495 IPR038333 BER93_15495 BER93_15500 IPR003497 BRO N-terminal domain BER93_15510 IPR000055 Restriction endonuclease, type I, HsdS BER93_15515 IPR004473 Restriction endonuclease, type I, HsdR BER93_15515 IPR006935 Helicase/UvrB domain BER93_15515 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal BER93_15515 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_15515 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15520 IPR002725 Protein of unknown function DUF45 BER93_15535 IPR002514 Transposase IS3/IS911family BER93_15535 IPR009057 Homeodomain-like BER93_15545 IPR000182 GNAT domain BER93_15545 IPR006464 Ribosomal-protein-alanine acetyltransferase BER93_15545 IPR016181 Acyl-CoA N-acyltransferase BER93_15550 IPR036654 BER93_15550 BER93_15555 IPR000462 CDP-alcohol phosphatidyltransferase BER93_15555 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase BER93_15560 IPR025392 Domain of unknown function DUF4124 BER93_15565 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain BER93_15565 IPR002316 Proline-tRNA ligase, class IIa BER93_15565 IPR004154 Anticodon-binding BER93_15565 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type BER93_15565 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain BER93_15565 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 BER93_15565 IPR036621 BER93_15565 BER93_15565 IPR036754 BER93_15565 BER93_15570 IPR001801 Histone-like protein H-NS BER93_15570 IPR027444 Histone-like protein H-NS, C-terminal domain BER93_15570 IPR037150 BER93_15570 BER93_15575 IPR010619 Domain of unknown function DUF1212 BER93_15575 IPR024528 Domain of unknown function DUF3815 BER93_15580 IPR003453 Permease domain BER93_15580 IPR030802 BER93_15580 BER93_15585 IPR003439 ABC transporter-like BER93_15585 IPR003593 AAA+ ATPase domain BER93_15585 IPR017871 ABC transporter, conserved site BER93_15585 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15590 IPR003399 Mammalian cell entry-related BER93_15595 IPR005586 Protein of unknown function DUF330 BER93_15605 IPR036188 BER93_15605 BER93_15610 IPR007739 Rhamnan synthesis F BER93_15610 IPR023214 HAD-like domain BER93_15610 IPR036412 BER93_15610 BER93_15615 IPR004164 Coenzyme A transferase active site BER93_15615 IPR004165 Coenzyme A transferase family I BER93_15615 IPR012791 3-oxoacid CoA-transferase, subunit B BER93_15615 IPR037171 BER93_15615 BER93_15620 IPR004163 Coenzyme A transferase binding site BER93_15620 IPR004165 Coenzyme A transferase family I BER93_15620 IPR012792 3-oxoacid CoA-transferase, subunit A BER93_15620 IPR037171 BER93_15620 BER93_15625 IPR005841 Alpha-D-phosphohexomutase superfamily BER93_15625 IPR005843 Alpha-D-phosphohexomutase, C-terminal BER93_15625 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I BER93_15625 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II BER93_15625 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III BER93_15625 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III BER93_15625 IPR016066 Alpha-D-phosphohexomutase, conserved site BER93_15625 IPR036900 BER93_15625 BER93_15630 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal BER93_15630 IPR005835 Nucleotidyl transferase BER93_15630 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase BER93_15630 IPR011051 RmlC-like cupin domain BER93_15630 IPR014710 RmlC-like jelly roll fold BER93_15630 IPR029044 Nucleotide-diphospho-sugar transferases BER93_15635 IPR005913 dTDP-4-dehydrorhamnose reductase BER93_15635 IPR029903 BER93_15635 BER93_15635 IPR036291 BER93_15635 BER93_15640 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related BER93_15640 IPR011051 RmlC-like cupin domain BER93_15640 IPR014710 RmlC-like jelly roll fold BER93_15645 IPR005835 Nucleotidyl transferase BER93_15645 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form BER93_15645 IPR029044 Nucleotide-diphospho-sugar transferases BER93_15650 IPR005888 dTDP-glucose 4,6-dehydratase BER93_15650 IPR016040 NAD(P)-binding domain BER93_15650 IPR036291 BER93_15650 BER93_15655 IPR012255 Electron transfer flavoprotein, beta subunit BER93_15655 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_15655 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal BER93_15660 IPR001308 Electron transfer flavoprotein, alpha subunit BER93_15660 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_15660 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal BER93_15660 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal BER93_15660 IPR018206 Electron transfer flavoprotein, alpha subunit, C-terminal, conserved site BER93_15660 IPR029035 DHS-like NAD/FAD-binding domain BER93_15665 IPR036291 BER93_15665 BER93_15670 IPR001173 Glycosyltransferase 2-like BER93_15670 IPR029044 Nucleotide-diphospho-sugar transferases BER93_15675 IPR007267 GtrA-like protein BER93_15690 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain BER93_15690 IPR036291 BER93_15690 BER93_15695 IPR006368 GDP-mannose 4,6-dehydratase BER93_15695 IPR016040 NAD(P)-binding domain BER93_15695 IPR036291 BER93_15695 BER93_15710 IPR001296 Glycosyl transferase, family 1 BER93_15715 IPR011009 Protein kinase-like domain BER93_15715 IPR025714 Methyltransferase domain BER93_15715 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_15720 IPR003439 ABC transporter-like BER93_15720 IPR003593 AAA+ ATPase domain BER93_15720 IPR017871 ABC transporter, conserved site BER93_15720 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15720 IPR029439 Wzt, C-terminal BER93_15725 IPR013525 ABC-2 type transporter BER93_15730 IPR001296 Glycosyl transferase, family 1 BER93_15735 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_15735 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_15735 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_15735 IPR015424 Pyridoxal phosphate-dependent transferase BER93_15740 IPR000644 CBS domain BER93_15740 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site BER93_15740 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_15740 IPR036052 BER93_15740 BER93_15745 IPR007420 Protein of unknown function DUF465 BER93_15750 IPR036737 BER93_15750 BER93_15755 IPR025511 Domain of unknown function DUF4398 BER93_15760 IPR001482 Type II secretion system protein E BER93_15760 IPR006321 Pilus retraction protein PilT BER93_15760 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15770 IPR004045 Glutathione S-transferase, N-terminal BER93_15770 IPR005955 Maleylacetoacetate isomerase BER93_15770 IPR036249 BER93_15770 BER93_15770 IPR036282 BER93_15770 BER93_15775 IPR011234 Fumarylacetoacetase, C-terminal-related BER93_15775 IPR036663 BER93_15775 BER93_15780 IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site BER93_15780 IPR001650 Helicase, C-terminal BER93_15780 IPR011545 DEAD/DEAH box helicase domain BER93_15780 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_15780 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15785 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein BER93_15785 IPR038418 BER93_15785 BER93_15795 IPR004472 Dethiobiotin synthase BioD BER93_15795 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15800 IPR000614 Free Met sulfoxide reductase conserved site BER93_15800 IPR003018 GAF domain BER93_15800 IPR029016 GAF domain-like BER93_15805 IPR007077 TfoX, C-terminal BER93_15815 IPR002559 Transposase, IS4-like BER93_15815 IPR008490 Transposase InsH, N-terminal BER93_15825 IPR006346 2-phosphoglycolate phosphatase, prokaryotic BER93_15825 IPR006439 HAD hydrolase, subfamily IA BER93_15825 IPR023198 Phosphoglycolate phosphatase, domain 2 BER93_15825 IPR023214 HAD-like domain BER93_15825 IPR036412 BER93_15825 BER93_15825 IPR037512 BER93_15825 BER93_15830 IPR001126 DNA-repair protein, UmuC-like BER93_15830 IPR017961 DNA polymerase, Y-family, little finger domain BER93_15830 IPR022880 DNA polymerase IV BER93_15830 IPR024728 DNA polymerase type-Y, HhH motif BER93_15830 IPR036775 BER93_15830 BER93_15840 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA BER93_15840 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ BER93_15840 IPR029069 HotDog domain BER93_15845 IPR014030 Beta-ketoacyl synthase, N-terminal BER93_15845 IPR014031 Beta-ketoacyl synthase, C-terminal BER93_15845 IPR016039 Thiolase-like BER93_15845 IPR018201 Beta-ketoacyl synthase, active site BER93_15845 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BER93_15855 IPR001567 Peptidase M3A/M3B BER93_15855 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER93_15860 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_15860 IPR036052 BER93_15860 BER93_15870 IPR001117 Multicopper oxidase, type 1 BER93_15870 IPR002355 Multicopper oxidase, copper-binding site BER93_15870 IPR006376 Copper-resistance protein CopA BER93_15870 IPR008972 Cupredoxin BER93_15870 IPR011706 Multicopper oxidase, type 2 BER93_15870 IPR011707 Multicopper oxidase, type 3 BER93_15870 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER93_15870 IPR033138 BER93_15870 BER93_15875 IPR007939 Copper resistance B precursor BER93_15880 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BER93_15880 IPR004361 Glyoxalase I BER93_15880 IPR018146 Glyoxalase I, conserved site BER93_15880 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BER93_15890 IPR001347 Sugar isomerase (SIS) BER93_15890 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising BER93_15890 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_15905 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_15905 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_15905 IPR036890 BER93_15905 BER93_15910 IPR011050 Pectin lyase fold/virulence factor BER93_15910 IPR012334 Pectin lyase fold BER93_15915 IPR001451 Bacterial transferase hexapeptide repeat BER93_15915 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase BER93_15915 IPR011004 Trimeric LpxA-like BER93_15915 IPR018357 Hexapeptide transferase, conserved site BER93_15915 IPR025877 MobA-like NTP transferase domain BER93_15915 IPR029044 Nucleotide-diphospho-sugar transferases BER93_15920 IPR007267 GtrA-like protein BER93_15925 IPR002701 Chorismate mutase BER93_15925 IPR008240 Chorismate mutase, periplasmic BER93_15925 IPR036263 BER93_15925 BER93_15930 IPR001469 ATPase, F1 complex, delta/epsilon subunit BER93_15930 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal BER93_15930 IPR020547 ATPase, F1 complex, delta/epsilon subunit, C-terminal domain BER93_15930 IPR036771 BER93_15930 BER93_15930 IPR036794 BER93_15930 BER93_15935 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_15935 IPR003593 AAA+ ATPase domain BER93_15935 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain BER93_15935 IPR005722 ATPase, F1 complex, beta subunit BER93_15935 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_15935 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal BER93_15935 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15935 IPR036121 BER93_15935 BER93_15940 IPR000131 ATPase, F1 complex, gamma subunit BER93_15940 IPR023632 ATPase, F1 complex, gamma subunit conserved site BER93_15940 IPR035968 BER93_15940 BER93_15945 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain BER93_15945 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal BER93_15945 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain BER93_15945 IPR005294 ATPase, F1 complex, alpha subunit BER93_15945 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site BER93_15945 IPR023366 ATP synthase subunit alpha-like domain BER93_15945 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_15945 IPR036121 BER93_15945 BER93_15945 IPR038376 BER93_15945 BER93_15950 IPR000711 ATPase, OSCP/delta subunit BER93_15950 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain BER93_15955 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast BER93_15955 IPR005864 ATPase, F0 complex, subunit B, bacterial BER93_15955 IPR028987 F-type ATP synthase subunit B-like, membrane domain BER93_15960 IPR000454 ATPase, F0 complex, subunit C BER93_15960 IPR002379 V-ATPase proteolipid subunit C-like domain BER93_15960 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast BER93_15960 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site BER93_15960 IPR035921 BER93_15960 BER93_15960 IPR038662 BER93_15960 BER93_15965 IPR000568 ATPase, F0 complex, subunit A BER93_15965 IPR023011 ATPase, F0 complex, subunit A, active site BER93_15965 IPR035908 BER93_15965 BER93_15980 IPR000089 Biotin/lipoyl attachment BER93_15980 IPR001100 BER93_15980 BER93_15980 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site BER93_15980 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_15980 IPR006258 Dihydrolipoamide dehydrogenase BER93_15980 IPR011053 Single hybrid motif BER93_15980 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site BER93_15980 IPR016156 FAD/NAD-linked reductase, dimerisation domain BER93_15980 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_15980 IPR036188 BER93_15980 BER93_16000 IPR005122 Uracil-DNA glycosylase-like BER93_16000 IPR026353 Hypoxanthine-DNA glycosylase BER93_16000 IPR036895 BER93_16000 BER93_16005 IPR005618 Outer membrane protein, OmpW BER93_16005 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel BER93_16015 IPR004872 Lipoprotein NlpA family BER93_16020 IPR000515 MetI-like domain BER93_16020 IPR035906 BER93_16020 BER93_16025 IPR003439 ABC transporter-like BER93_16025 IPR003593 AAA+ ATPase domain BER93_16025 IPR017871 ABC transporter, conserved site BER93_16025 IPR018449 NIL domain BER93_16025 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16030 IPR007551 Protein of unknown function DUF520 BER93_16030 IPR035570 BER93_16030 BER93_16030 IPR035571 BER93_16030 BER93_16030 IPR036183 BER93_16030 BER93_16045 IPR009858 Protein of unknown function DUF1415 BER93_16060 IPR002559 Transposase, IS4-like BER93_16065 IPR002559 Transposase, IS4-like BER93_16075 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_16075 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_16075 IPR020103 Pseudouridine synthase, catalytic domain BER93_16075 IPR036986 BER93_16075 BER93_16080 IPR002052 DNA methylase, N-6 adenine-specific, conserved site BER93_16080 IPR007848 Methyltransferase small domain BER93_16080 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_16090 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase BER93_16090 IPR011042 Six-bladed beta-propeller, TolB-like BER93_16090 IPR012938 Glucose/Sorbosone dehydrogenase BER93_16095 IPR021649 Protein of unknown function DUF3247 BER93_16100 IPR000014 PAS domain BER93_16100 IPR001610 PAC motif BER93_16100 IPR001789 Signal transduction response regulator, receiver domain BER93_16100 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_16100 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_16100 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_16100 IPR011006 CheY-like superfamily BER93_16100 IPR013656 PAS fold-4 BER93_16100 IPR035965 BER93_16100 BER93_16100 IPR036097 BER93_16100 BER93_16100 IPR036890 BER93_16100 BER93_16115 IPR021557 Protein of unknown function DUF3016 BER93_16120 IPR000821 Alanine racemase BER93_16120 IPR001608 Alanine racemase, N-terminal BER93_16120 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal BER93_16120 IPR011079 Alanine racemase, C-terminal BER93_16120 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site BER93_16120 IPR029066 PLP-binding barrel BER93_16125 IPR006076 FAD dependent oxidoreductase BER93_16125 IPR023080 D-amino acid dehydrogenase small subunit, DadA BER93_16125 IPR036188 BER93_16125 BER93_16140 IPR002579 Peptide methionine sulphoxide reductase MrsB BER93_16140 IPR011057 Mss4-like BER93_16145 IPR000540 Flagellar motor protein MotA, conserved site BER93_16145 IPR002898 MotA/TolQ/ExbB proton channel BER93_16145 IPR022522 Flagellar motor stator, MotA BER93_16150 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_16150 IPR025713 Motility protein B, N-terminal domain BER93_16150 IPR036737 BER93_16150 BER93_16160 IPR025109 Domain of unknown function DUF4031 BER93_16165 IPR016164 FAD-linked oxidase-like, C-terminal BER93_16170 IPR021724 Protein of unknown function DUF3297 BER93_16180 IPR002559 Transposase, IS4-like BER93_16180 IPR025161 Putative transposase IS4/IS5 family BER93_16185 IPR002559 Transposase, IS4-like BER93_16220 IPR002646 Poly A polymerase, head domain BER93_16220 IPR006674 HD domain BER93_16220 IPR012006 tRNA nucleotidyltransferase, proteobacteria BER93_16220 IPR032828 BER93_16220 BER93_16230 IPR008258 Lytic transglycosylase-like SLT domain BER93_16230 IPR008939 Lytic transglycosylase, superhelical U-shaped BER93_16230 IPR012289 Lytic transglycosylase, superhelical linker BER93_16230 IPR023346 Lysozyme-like domain BER93_16235 IPR011989 Armadillo-like helical BER93_16235 IPR016024 Armadillo-type fold BER93_16250 IPR001584 Integrase, catalytic core BER93_16250 IPR012337 Ribonuclease H-like domain BER93_16300 IPR002559 Transposase, IS4-like BER93_16300 IPR025161 Putative transposase IS4/IS5 family BER93_16305 IPR001874 Dehydroquinase, class II BER93_16305 IPR018509 Dehydroquinase, class II, conserved site BER93_16305 IPR036441 BER93_16305 BER93_16310 IPR000089 Biotin/lipoyl attachment BER93_16310 IPR001249 Acetyl-CoA biotin carboxyl carrier BER93_16310 IPR001882 Biotin-binding site BER93_16310 IPR011053 Single hybrid motif BER93_16320 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase BER93_16320 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain BER93_16320 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal BER93_16320 IPR005482 Biotin carboxylase, C-terminal BER93_16320 IPR011054 Rudiment single hybrid motif BER93_16320 IPR013815 ATP-grasp fold, subdomain 1 BER93_16320 IPR016185 Pre-ATP-grasp domain BER93_16325 IPR004498 Ribosomal protein L11 methyltransferase BER93_16325 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_16335 IPR001387 Cro/C1-type helix-turn-helix domain BER93_16335 IPR010982 Lambda repressor-like, DNA-binding domain BER93_16340 IPR021834 Protein of unknown function DUF3426 BER93_16345 IPR002197 DNA binding HTH domain, Fis-type BER93_16345 IPR005412 DNA-binding protein Fis BER93_16345 IPR009057 Homeodomain-like BER93_16350 IPR000258 Bacterial ice-nucleation, octamer repeat BER93_16355 IPR002695 AICARFT/IMPCHase bienzyme BER93_16355 IPR011607 Methylglyoxal synthase-like domain BER93_16355 IPR016193 Cytidine deaminase-like BER93_16355 IPR024051 AICAR transformylase domain BER93_16355 IPR036914 BER93_16355 BER93_16360 IPR000115 Phosphoribosylglycinamide synthetase BER93_16360 IPR011054 Rudiment single hybrid motif BER93_16360 IPR013815 ATP-grasp fold, subdomain 1 BER93_16360 IPR016185 Pre-ATP-grasp domain BER93_16360 IPR020559 Phosphoribosylglycinamide synthetase, conserved site BER93_16360 IPR020560 Phosphoribosylglycinamide synthetase, C-domain BER93_16360 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BER93_16360 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal BER93_16360 IPR037123 BER93_16360 BER93_16365 IPR010019 Integral membrane protein, YccS BER93_16365 IPR010020 Integral membrane protein, YccS/YhfK BER93_16365 IPR032692 BER93_16365 BER93_16370 IPR011701 Major facilitator superfamily BER93_16370 IPR036259 BER93_16370 BER93_16385 IPR002123 Phospholipid/glycerol acyltransferase BER93_16385 IPR011701 Major facilitator superfamily BER93_16385 IPR036259 BER93_16385 BER93_16390 IPR007593 CD225/Dispanin family BER93_16395 IPR021215 Protein of unknown function DUF2752 BER93_16405 IPR000086 NUDIX hydrolase domain BER93_16405 IPR015375 NADH pyrophosphatase-like, N-terminal BER93_16405 IPR015376 Zinc ribbon, NADH pyrophosphatase BER93_16405 IPR015797 NUDIX hydrolase domain-like BER93_16405 IPR020084 NUDIX hydrolase, conserved site BER93_16410 IPR002104 Integrase, catalytic BER93_16410 IPR011010 DNA breaking-rejoining enzyme, catalytic core BER93_16410 IPR013762 Integrase-like, catalytic core BER93_16415 IPR002559 Transposase, IS4-like BER93_16415 IPR008490 Transposase InsH, N-terminal BER93_16420 IPR037143 BER93_16420 BER93_16425 IPR002514 Transposase IS3/IS911family BER93_16425 IPR009057 Homeodomain-like BER93_16430 IPR001584 Integrase, catalytic core BER93_16430 IPR012337 Ribonuclease H-like domain BER93_16430 IPR025948 HTH-like domain BER93_16430 IPR036397 BER93_16430 BER93_16460 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal BER93_16460 IPR006276 Cobalamin-independent methionine synthase BER93_16460 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal BER93_16460 IPR038071 BER93_16460 BER93_16465 IPR011664 Abortive infection system protein AbiD/AbiF-like BER93_16465 IPR017034 Abortive infection system protein AbiD/AbiF BER93_16475 IPR002577 Helix-turn-helix, HxlR type BER93_16475 IPR036388 BER93_16475 BER93_16475 IPR036390 BER93_16475 BER93_16480 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase BER93_16480 IPR004404 Dihydroxy-acid dehydratase BER93_16480 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site BER93_16480 IPR037237 BER93_16480 BER93_16485 IPR001451 Bacterial transferase hexapeptide repeat BER93_16485 IPR011004 Trimeric LpxA-like BER93_16500 IPR002514 Transposase IS3/IS911family BER93_16500 IPR009057 Homeodomain-like BER93_16505 IPR001584 Integrase, catalytic core BER93_16505 IPR012337 Ribonuclease H-like domain BER93_16505 IPR025948 HTH-like domain BER93_16505 IPR036397 BER93_16505 BER93_16515 IPR002559 Transposase, IS4-like BER93_16515 IPR008490 Transposase InsH, N-terminal BER93_16520 IPR001036 Acriflavin resistance protein BER93_16525 IPR001036 Acriflavin resistance protein BER93_16525 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_16535 IPR002376 Formyl transferase, N-terminal BER93_16535 IPR002912 ACT domain BER93_16535 IPR004810 Formyltetrahydrofolate deformylase BER93_16535 IPR036477 BER93_16535 BER93_16540 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal BER93_16540 IPR013785 Aldolase-type TIM barrel BER93_16545 IPR003000 Sirtuin family BER93_16545 IPR026587 Sirtuin, class II BER93_16545 IPR026591 Sirtuin family, catalytic core small domain BER93_16545 IPR029035 DHS-like NAD/FAD-binding domain BER93_16555 IPR005829 Sugar transporter, conserved site BER93_16555 IPR011701 Major facilitator superfamily BER93_16555 IPR036259 BER93_16555 BER93_16560 IPR001130 TatD family BER93_16560 IPR018228 Deoxyribonuclease, TatD-related, conserved site BER93_16560 IPR032466 BER93_16560 BER93_16565 IPR009921 Domain of unknown function DUF1456 BER93_16575 IPR001650 Helicase, C-terminal BER93_16575 IPR007502 Helicase-associated domain BER93_16575 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type BER93_16575 IPR013689 RNA helicase, ATP-dependent, HrpB type, C-terminal BER93_16575 IPR014001 Helicase, superfamily 1/2, ATP-binding domain BER93_16575 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16595 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F BER93_16595 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F BER93_16595 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site BER93_16595 IPR020103 Pseudouridine synthase, catalytic domain BER93_16600 IPR016980 S-adenosyl-L-methionine dependent methyltransferase, Alr7345, predicted BER93_16600 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_16605 IPR023210 NADP-dependent oxidoreductase domain BER93_16605 IPR036812 BER93_16605 BER93_16610 IPR011032 GroES (chaperonin 10)-like BER93_16610 IPR013149 Alcohol dehydrogenase, C-terminal BER93_16610 IPR020843 Polyketide synthase, enoylreductase BER93_16610 IPR036291 BER93_16610 BER93_16615 IPR018170 Aldo/keto reductase, conserved site BER93_16615 IPR020471 Aldo/keto reductase subgroup BER93_16615 IPR023210 NADP-dependent oxidoreductase domain BER93_16615 IPR036812 BER93_16615 BER93_16625 IPR003718 OsmC/Ohr family BER93_16625 IPR015946 K homology domain-like, alpha/beta BER93_16625 IPR019953 Organic hydroperoxide resistance protein famiy BER93_16625 IPR036102 BER93_16625 BER93_16635 IPR005654 ATPase, AFG1-like BER93_16635 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16635 IPR030870 BER93_16635 BER93_16640 IPR022742 Putative lysophospholipase BER93_16640 IPR029058 Alpha/Beta hydrolase fold BER93_16660 IPR004891 MerC mercury resistance protein BER93_16665 IPR005135 Endonuclease/exonuclease/phosphatase BER93_16665 IPR036691 BER93_16665 BER93_16670 IPR009056 Cytochrome c-like domain BER93_16670 IPR036909 BER93_16670 BER93_16675 IPR021762 Protein of unknown function DUF3325 BER93_16680 IPR001647 DNA-binding HTH domain, TetR-type BER93_16680 IPR009057 Homeodomain-like BER93_16680 IPR036271 BER93_16680 BER93_16685 IPR006089 Acyl-CoA dehydrogenase, conserved site BER93_16685 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain BER93_16685 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal BER93_16685 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain BER93_16685 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal BER93_16685 IPR036250 BER93_16685 BER93_16685 IPR037069 BER93_16685 BER93_16690 IPR029045 ClpP/crotonase-like domain BER93_16690 IPR034733 BER93_16690 BER93_16695 IPR000089 Biotin/lipoyl attachment BER93_16695 IPR001882 Biotin-binding site BER93_16695 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain BER93_16695 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal BER93_16695 IPR005482 Biotin carboxylase, C-terminal BER93_16695 IPR011053 Single hybrid motif BER93_16695 IPR011054 Rudiment single hybrid motif BER93_16695 IPR013815 ATP-grasp fold, subdomain 1 BER93_16695 IPR016185 Pre-ATP-grasp domain BER93_16705 IPR002729 CRISPR-associated protein Cas1 BER93_16705 IPR019857 CRISPR-associated protein Cas1, YPEST subtype BER93_16710 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type BER93_16710 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16710 IPR038257 BER93_16710 BER93_16715 IPR013397 CRISPR-associated protein Csy1 BER93_16720 IPR013398 CRISPR-associated protein Csy2 BER93_16725 IPR013399 CRISPR-associated protein Csy3 BER93_16730 IPR013396 CRISPR-associated protein Csy4 BER93_16735 IPR001584 Integrase, catalytic core BER93_16735 IPR012337 Ribonuclease H-like domain BER93_16735 IPR036397 BER93_16735 BER93_16745 IPR002514 Transposase IS3/IS911family BER93_16745 IPR009057 Homeodomain-like BER93_16755 IPR001036 Acriflavin resistance protein BER93_16755 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BER93_16760 IPR006143 RND efflux pump, membrane fusion protein BER93_16760 IPR032317 BER93_16760 BER93_16765 IPR000795 Elongation factor, GTP-binding domain BER93_16765 IPR002891 Adenylylsulphate kinase BER93_16765 IPR009000 Translation protein, beta-barrel domain BER93_16765 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BER93_16765 IPR011779 Sulphate adenylyltransferase, large subunit BER93_16765 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16765 IPR031157 BER93_16765 BER93_16770 IPR002500 Phosphoadenosine phosphosulphate reductase BER93_16770 IPR011784 Sulphate adenylyltransferase, small subunit BER93_16770 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_16775 IPR001094 Flavodoxin BER93_16775 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_16775 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_16775 IPR003097 FAD-binding, type 1 BER93_16775 IPR008254 Flavodoxin/nitric oxide synthase BER93_16775 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain BER93_16775 IPR017938 Riboflavin synthase-like beta-barrel BER93_16775 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 BER93_16775 IPR029039 Flavoprotein-like BER93_16775 IPR039261 BER93_16775 BER93_16780 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain BER93_16780 IPR006066 Nitrite/sulphite reductase iron-sulphur/siroheam-binding site BER93_16780 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain BER93_16780 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit BER93_16780 IPR036136 BER93_16780 BER93_16785 IPR002500 Phosphoadenosine phosphosulphate reductase BER93_16785 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase BER93_16785 IPR011800 Phosphoadenosine phosphosulphate reductase CysH BER93_16785 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_16790 IPR005625 PepSY-associated TM helix BER93_16795 IPR000531 TonB-dependent receptor, beta-barrel BER93_16795 IPR012910 TonB-dependent receptor, plug BER93_16795 IPR036942 BER93_16795 BER93_16795 IPR037066 BER93_16795 BER93_16800 IPR021333 Protein of unknown function DUF2946 BER93_16805 IPR003018 GAF domain BER93_16805 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_16805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_16805 IPR029016 GAF domain-like BER93_16805 IPR036097 BER93_16805 BER93_16805 IPR036890 BER93_16805 BER93_16815 IPR000847 Transcription regulator HTH, LysR BER93_16815 IPR005119 LysR, substrate-binding BER93_16815 IPR036388 BER93_16815 BER93_16815 IPR036390 BER93_16815 BER93_16820 IPR000878 Tetrapyrrole methylase BER93_16820 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site BER93_16820 IPR006366 Uroporphyrin-III C-methyltransferase BER93_16820 IPR014776 Tetrapyrrole methylase, subdomain 2 BER93_16820 IPR014777 Tetrapyrrole methylase, subdomain 1 BER93_16820 IPR035996 BER93_16820 BER93_16825 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site BER93_16825 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_16825 IPR005856 Cysteine synthase K/M BER93_16825 IPR005859 Cysteine synthase A BER93_16825 IPR036052 BER93_16825 BER93_16835 IPR000741 Fructose-bisphosphate aldolase, class-I BER93_16835 IPR013785 Aldolase-type TIM barrel BER93_16835 IPR029768 Fructose-bisphosphate aldolase class-I active site BER93_16840 IPR001697 Pyruvate kinase BER93_16840 IPR011037 Pyruvate kinase-like, insert domain BER93_16840 IPR015793 Pyruvate kinase, barrel BER93_16840 IPR015795 Pyruvate kinase, C-terminal BER93_16840 IPR015806 Pyruvate kinase, beta-barrel insert domain BER93_16840 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain BER93_16840 IPR018209 Pyruvate kinase, active site BER93_16840 IPR036918 BER93_16840 BER93_16845 IPR023198 Phosphoglycolate phosphatase, domain 2 BER93_16845 IPR023214 HAD-like domain BER93_16845 IPR036412 BER93_16845 BER93_16850 IPR001576 Phosphoglycerate kinase BER93_16850 IPR015824 Phosphoglycerate kinase, N-terminal BER93_16850 IPR015911 Phosphoglycerate kinase, conserved site BER93_16850 IPR036043 BER93_16850 BER93_16855 IPR019286 Protein of unknown function DUF2339, transmembrane BER93_16875 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_16875 IPR036890 BER93_16875 BER93_16880 IPR000192 Aminotransferase class V domain BER93_16880 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_16880 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_16880 IPR015424 Pyridoxal phosphate-dependent transferase BER93_16880 IPR016454 Cysteine desulfurase, NifS BER93_16880 IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site BER93_16885 IPR002500 Phosphoadenosine phosphosulphate reductase BER93_16885 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_16890 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16895 IPR025248 Domain of unknown function DUF4007 BER93_16905 IPR002559 Transposase, IS4-like BER93_16905 IPR025161 Putative transposase IS4/IS5 family BER93_16910 IPR024442 Transposase, zinc-ribbon BER93_16910 IPR024445 Transposase, ISXO2-like BER93_16915 IPR002514 Transposase IS3/IS911family BER93_16915 IPR009057 Homeodomain-like BER93_16920 IPR001584 Integrase, catalytic core BER93_16920 IPR012337 Ribonuclease H-like domain BER93_16920 IPR025948 HTH-like domain BER93_16920 IPR036397 BER93_16920 BER93_16925 IPR024445 Transposase, ISXO2-like BER93_16930 IPR002559 Transposase, IS4-like BER93_16930 IPR008490 Transposase InsH, N-terminal BER93_16945 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I BER93_16945 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain BER93_16945 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain BER93_16945 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site BER93_16945 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family BER93_16945 IPR036291 BER93_16945 BER93_16950 IPR005618 Outer membrane protein, OmpW BER93_16950 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel BER93_16955 IPR003154 S1/P1 nuclease BER93_16955 IPR008947 Phospholipase C/P1 nuclease domain BER93_16960 IPR001279 Beta-lactamase-like BER93_16960 IPR036866 BER93_16960 BER93_16965 IPR005950 Molybdenum ABC transporter, periplasmic binding protein BER93_16970 IPR000515 MetI-like domain BER93_16970 IPR011867 Molybdate ABC transporter, permease protein BER93_16970 IPR035906 BER93_16970 BER93_16975 IPR003439 ABC transporter-like BER93_16975 IPR003593 AAA+ ATPase domain BER93_16975 IPR011868 Molybdate ABC transporter, ATP-binding protein BER93_16975 IPR017871 ABC transporter, conserved site BER93_16975 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_16990 IPR005650 BlaI transcriptional regulatory family BER93_16990 IPR036388 BER93_16990 BER93_16990 IPR036390 BER93_16990 BER93_17000 IPR002477 Peptidoglycan binding-like BER93_17000 IPR005490 L,D-transpeptidase catalytic domain BER93_17000 IPR036365 BER93_17000 BER93_17000 IPR036366 BER93_17000 BER93_17000 IPR038063 BER93_17000 BER93_17005 IPR011055 Duplicated hybrid motif BER93_17005 IPR016047 Peptidase M23 BER93_17010 IPR012910 TonB-dependent receptor, plug BER93_17010 IPR036942 BER93_17010 BER93_17010 IPR037066 BER93_17010 BER93_17015 IPR005474 Transketolase, N-terminal BER93_17015 IPR005475 Transketolase-like, pyrimidine-binding domain BER93_17015 IPR005478 Transketolase, bacterial-like BER93_17015 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II BER93_17015 IPR020826 Transketolase binding site BER93_17015 IPR029061 Thiamin diphosphate-binding fold BER93_17015 IPR033248 BER93_17015 BER93_17020 IPR001991 Sodium:dicarboxylate symporter BER93_17020 IPR036458 BER93_17020 BER93_17025 IPR025738 Aerotolerance-related protein BatD BER93_17030 IPR001440 Tetratricopeptide TPR1 BER93_17030 IPR002035 von Willebrand factor, type A BER93_17030 IPR011990 Tetratricopeptide-like helical domain BER93_17030 IPR019734 Tetratricopeptide repeat BER93_17030 IPR036465 BER93_17030 BER93_17035 IPR002035 von Willebrand factor, type A BER93_17035 IPR036465 BER93_17035 BER93_17040 IPR025489 Protein of unknown function (DUF4381 BER93_17045 IPR002881 Domain of unknown function DUF58 BER93_17050 IPR003593 AAA+ ATPase domain BER93_17050 IPR011703 ATPase, AAA-3 BER93_17050 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_17075 IPR002559 Transposase, IS4-like BER93_17075 IPR008490 Transposase InsH, N-terminal BER93_17090 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria BER93_17090 IPR004709 Na+/H+ exchanger BER93_17090 IPR006153 Cation/H+ exchanger BER93_17110 IPR002559 Transposase, IS4-like BER93_17115 IPR000782 FAS1 domain BER93_17115 IPR036378 BER93_17115 BER93_17120 IPR005122 Uracil-DNA glycosylase-like BER93_17120 IPR005273 Uracil-DNA glycosylase, family 4 domain BER93_17120 IPR023875 DNA metabolism protein, putative BER93_17120 IPR025404 Domain of unknown function DUF4130 BER93_17120 IPR036895 BER93_17120 BER93_17125 IPR006638 Elongator protein 3/MiaB/NifB BER93_17125 IPR007197 Radical SAM BER93_17125 IPR010994 RuvA domain 2-like BER93_17125 IPR013785 Aldolase-type TIM barrel BER93_17125 IPR023874 DNA modification/repair radical SAM protein, putative BER93_17130 IPR023210 NADP-dependent oxidoreductase domain BER93_17130 IPR036812 BER93_17130 BER93_17135 IPR001173 Glycosyltransferase 2-like BER93_17135 IPR029044 Nucleotide-diphospho-sugar transferases BER93_17140 IPR008753 Peptidase M13, N-terminal domain BER93_17140 IPR018497 Peptidase M13, C-terminal domain BER93_17140 IPR024079 Metallopeptidase, catalytic domain BER93_17145 IPR018713 Domain of unknown function DUF2236 BER93_17155 IPR002293 Amino acid/polyamine transporter I BER93_17170 IPR009078 Ferritin-like superfamily BER93_17170 IPR010287 Domain of unknown function DUF892 BER93_17170 IPR012347 Ferritin-related BER93_17175 IPR007760 Manganese catalase BER93_17175 IPR009078 Ferritin-like superfamily BER93_17175 IPR012347 Ferritin-related BER93_17180 IPR036590 BER93_17180 BER93_17190 IPR000014 PAS domain BER93_17190 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase BER93_17190 IPR000780 MCP methyltransferase, CheR-type BER93_17190 IPR011102 Signal transduction histidine kinase, HWE region BER93_17190 IPR013655 PAS fold-3 BER93_17190 IPR022641 MCP methyltransferase, CheR-type, all-alpha domain, N-terminal BER93_17190 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BER93_17190 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_17190 IPR035909 BER93_17190 BER93_17190 IPR035965 BER93_17190 BER93_17190 IPR036890 BER93_17190 BER93_17195 IPR001789 Signal transduction response regulator, receiver domain BER93_17195 IPR011006 CheY-like superfamily BER93_17205 IPR001789 Signal transduction response regulator, receiver domain BER93_17205 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_17205 IPR002197 DNA binding HTH domain, Fis-type BER93_17205 IPR003593 AAA+ ATPase domain BER93_17205 IPR009057 Homeodomain-like BER93_17205 IPR011006 CheY-like superfamily BER93_17205 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_17205 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_17230 IPR002347 Glucose/ribitol dehydrogenase BER93_17230 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_17230 IPR036291 BER93_17230 BER93_17235 IPR005886 UDP-glucose 4-epimerase GalE BER93_17235 IPR016040 NAD(P)-binding domain BER93_17235 IPR036291 BER93_17235 BER93_17245 IPR004379 UDP-galactopyranose mutase BER93_17245 IPR015899 UDP-galactopyranose mutase, C-terminal BER93_17250 IPR017853 Glycoside hydrolase, superfamily BER93_17255 IPR003439 ABC transporter-like BER93_17255 IPR003593 AAA+ ATPase domain BER93_17255 IPR011527 ABC transporter type 1, transmembrane domain BER93_17255 IPR017871 ABC transporter, conserved site BER93_17255 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_17255 IPR036640 BER93_17255 BER93_17260 IPR022037 Protein of unknown function DUF3606 BER93_17265 IPR025419 Domain of unknown function DUF4142 BER93_17270 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_17270 IPR011032 GroES (chaperonin 10)-like BER93_17270 IPR013149 Alcohol dehydrogenase, C-terminal BER93_17270 IPR013154 Alcohol dehydrogenase GroES-like BER93_17270 IPR027399 Alcohol dehydrogenase GroES-associated N-terminal domain BER93_17270 IPR036291 BER93_17270 BER93_17280 IPR005358 Putative zinc- or iron-chelating domain containing protein BER93_17290 IPR021783 Protein of unknown function DUF3348 BER93_17295 IPR008520 Domain of unknown function DUF802 BER93_17300 IPR006665 Outer membrane protein, OmpA/MotB, C-terminal BER93_17300 IPR036737 BER93_17300 BER93_17305 IPR021549 Protein of unknown function DUF2894 BER93_17310 IPR000531 TonB-dependent receptor, beta-barrel BER93_17310 IPR010105 TonB-dependent siderophore receptor BER93_17310 IPR012910 TonB-dependent receptor, plug BER93_17310 IPR036942 BER93_17310 BER93_17310 IPR037066 BER93_17310 BER93_17315 IPR021913 Protein of unknown function DUF3526 BER93_17320 IPR021913 Protein of unknown function DUF3526 BER93_17320 IPR032688 BER93_17320 BER93_17325 IPR003439 ABC transporter-like BER93_17325 IPR003593 AAA+ ATPase domain BER93_17325 IPR017871 ABC transporter, conserved site BER93_17325 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_17355 IPR002645 STAS domain BER93_17355 IPR011547 Sulphate transporter BER93_17355 IPR036513 BER93_17355 BER93_17380 IPR002514 Transposase IS3/IS911family BER93_17380 IPR009057 Homeodomain-like BER93_17395 IPR003959 ATPase, AAA-type, core BER93_17395 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_17400 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type BER93_17400 IPR005474 Transketolase, N-terminal BER93_17400 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II BER93_17400 IPR029061 Thiamin diphosphate-binding fold BER93_17410 IPR002559 Transposase, IS4-like BER93_17410 IPR025161 Putative transposase IS4/IS5 family BER93_17420 IPR001932 Protein phosphatase 2C (PP2C)-like domain BER93_17420 IPR003660 HAMP linker domain BER93_17420 IPR029151 Periplasmic sensor domain-like BER93_17420 IPR033479 BER93_17420 BER93_17420 IPR036457 BER93_17420 BER93_17425 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_17425 IPR036890 BER93_17425 BER93_17430 IPR002645 STAS domain BER93_17430 IPR003658 Anti-sigma factor antagonist BER93_17430 IPR036513 BER93_17430 BER93_17440 IPR009827 Dicarboxylate carrier MatC N-terminal BER93_17445 IPR001227 Acyl transferase domain BER93_17445 IPR014043 Acyl transferase BER93_17445 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BER93_17445 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BER93_17445 IPR017554 Malonate decarboxylase, McdH subunit BER93_17445 IPR020801 Polyketide synthase, acyl transferase domain BER93_17450 IPR002736 Triphosphoribosyl-dephospho-CoA protein BER93_17450 IPR017555 Triphosphoribosyl-dephospho-CoA synthase BER93_17455 IPR017557 Phosphoribosyl-dephospho-CoA transferase BER93_17460 IPR009648 Malonate decarboxylase gamma subunit BER93_17460 IPR029045 ClpP/crotonase-like domain BER93_17465 IPR017556 Malonate decarboxylase, beta subunit BER93_17465 IPR029045 ClpP/crotonase-like domain BER93_17465 IPR034733 BER93_17465 BER93_17470 IPR009662 Malonate decarboxylase delta subunit BER93_17470 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein BER93_17480 IPR007037 Siderophore-interacting protein BER93_17480 IPR013113 FAD-binding 9, siderophore-interacting BER93_17480 IPR017938 Riboflavin synthase-like beta-barrel BER93_17480 IPR039261 BER93_17480 BER93_17490 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER93_17490 IPR036761 BER93_17490 BER93_17495 IPR000415 Nitroreductase-like BER93_17495 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE BER93_17495 IPR029479 Nitroreductase BER93_17500 IPR009367 Mitochondrial fission protein ELM1-like BER93_17505 IPR003744 Protein of unknown function DUF165 BER93_17510 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain BER93_17510 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase BER93_17510 IPR023057 Glutamate-ammonia-ligase adenylyltransferase BER93_17515 IPR011051 RmlC-like cupin domain BER93_17515 IPR014710 RmlC-like jelly roll fold BER93_17520 IPR005511 Senescence marker protein-30 (SMP-30) BER93_17520 IPR011042 Six-bladed beta-propeller, TolB-like BER93_17520 IPR013658 SMP-30/Gluconolactonase/LRE-like region BER93_17530 IPR003702 Acetyl-CoA hydrolase/transferase BER93_17530 IPR017821 Succinate CoA transferase BER93_17530 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain BER93_17530 IPR037171 BER93_17530 BER93_17530 IPR038460 BER93_17530 BER93_17540 IPR006218 DAHP synthetase I/KDSA BER93_17540 IPR006219 DHAP synthase, class 1 BER93_17540 IPR013785 Aldolase-type TIM barrel BER93_17560 IPR001844 Chaperonin Cpn60 BER93_17560 IPR002423 Chaperonin Cpn60/TCP-1 BER93_17560 IPR018370 Chaperonin Cpn60, conserved site BER93_17560 IPR027409 GroEL-like apical domain BER93_17560 IPR027410 TCP-1-like chaperonin intermediate domain BER93_17560 IPR027413 GroEL-like equatorial domain BER93_17565 IPR011032 GroES (chaperonin 10)-like BER93_17565 IPR018369 Chaperonin Cpn10, conserved site BER93_17565 IPR020818 Chaperonin Cpn10 BER93_17565 IPR037124 BER93_17565 BER93_17580 IPR004323 Divalent ion tolerance protein, CutA BER93_17580 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER93_17580 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_17585 IPR003834 Cytochrome c assembly protein, transmembrane domain BER93_17585 IPR017937 Thioredoxin, conserved site BER93_17585 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BER93_17585 IPR036249 BER93_17585 BER93_17585 IPR036929 BER93_17585 BER93_17600 IPR002559 Transposase, IS4-like BER93_17600 IPR008490 Transposase InsH, N-terminal BER93_17605 IPR002559 Transposase, IS4-like BER93_17605 IPR025161 Putative transposase IS4/IS5 family BER93_17615 IPR001584 Integrase, catalytic core BER93_17615 IPR012337 Ribonuclease H-like domain BER93_17615 IPR025948 HTH-like domain BER93_17615 IPR036397 BER93_17615 BER93_17620 IPR002514 Transposase IS3/IS911family BER93_17620 IPR009057 Homeodomain-like BER93_17625 IPR016040 NAD(P)-binding domain BER93_17625 IPR036291 BER93_17625 BER93_17630 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_17630 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_17630 IPR011837 Glycogen debranching enzyme, GlgX type BER93_17630 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_17630 IPR013783 Immunoglobulin-like fold BER93_17630 IPR014756 Immunoglobulin E-set BER93_17630 IPR017853 Glycoside hydrolase, superfamily BER93_17635 IPR021327 Protein of unknown function DUF2934 BER93_17640 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_17640 IPR012767 Malto-oligosyltrehalose synthase BER93_17640 IPR017853 Glycoside hydrolase, superfamily BER93_17645 IPR003385 Glycoside hydrolase, family 77 BER93_17645 IPR017853 Glycoside hydrolase, superfamily BER93_17650 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_17650 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_17650 IPR012768 Malto-oligosyltrehalose trehalohydrolase BER93_17650 IPR013783 Immunoglobulin-like fold BER93_17650 IPR014756 Immunoglobulin E-set BER93_17650 IPR017853 Glycoside hydrolase, superfamily BER93_17650 IPR022567 Domain of unknown function DUF3459 BER93_17655 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_17655 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_17655 IPR006048 Alpha-amylase, C-terminal all beta BER93_17655 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB BER93_17655 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_17655 IPR013783 Immunoglobulin-like fold BER93_17655 IPR014756 Immunoglobulin E-set BER93_17655 IPR017853 Glycoside hydrolase, superfamily BER93_17655 IPR037439 BER93_17655 BER93_17660 IPR001296 Glycosyl transferase, family 1 BER93_17660 IPR011835 Glycogen/starch synthase, ADP-glucose type BER93_17660 IPR013534 Starch synthase, catalytic domain BER93_17665 IPR000160 GGDEF domain BER93_17665 IPR029787 Nucleotide cyclase BER93_17670 IPR003790 Protein of unknown function DUF187 BER93_17670 IPR013785 Aldolase-type TIM barrel BER93_17670 IPR017853 Glycoside hydrolase, superfamily BER93_17675 IPR008526 Inner membrane protein YedI BER93_17680 IPR004147 UbiB domain BER93_17680 IPR011009 Protein kinase-like domain BER93_17685 IPR006685 Mechanosensitive ion channel MscS BER93_17685 IPR010920 Like-Sm (LSM) domain BER93_17685 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 BER93_17685 IPR011066 Mechanosensitive ion channel MscS, C-terminal BER93_17685 IPR022249 Protein of unknown function DUF3772 BER93_17685 IPR023408 BER93_17685 BER93_17690 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein BER93_17690 IPR036567 BER93_17690 BER93_17700 IPR000537 UbiA prenyltransferase family BER93_17700 IPR006370 4-hydroxybenzoate polyprenyl transferase BER93_17700 IPR030470 BER93_17700 BER93_17705 IPR000836 Phosphoribosyltransferase domain BER93_17705 IPR029057 Phosphoribosyltransferase-like BER93_17710 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB BER93_17710 IPR006638 Elongator protein 3/MiaB/NifB BER93_17710 IPR007197 Radical SAM BER93_17710 IPR010722 Biotin and thiamin synthesis-associated domain BER93_17710 IPR013785 Aldolase-type TIM barrel BER93_17710 IPR024177 Biotin synthase BER93_17715 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type BER93_17715 IPR004839 Aminotransferase, class I/classII BER93_17715 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_17715 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_17715 IPR015424 Pyridoxal phosphate-dependent transferase BER93_17715 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria BER93_17725 IPR000073 Alpha/beta hydrolase fold-1 BER93_17725 IPR010076 Pimelyl-[acyl-carrier protein] methyl ester esterase BER93_17725 IPR029058 Alpha/Beta hydrolase fold BER93_17740 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC BER93_17740 IPR013216 Methyltransferase type 11 BER93_17740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_17745 IPR007803 Arginine/Asparagine/Proline hydroxylase BER93_17745 IPR027443 Isopenicillin N synthase-like BER93_17755 IPR003848 Domain of unknown function DUF218 BER93_17760 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site BER93_17760 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme BER93_17760 IPR036052 BER93_17760 BER93_17770 IPR002218 Glucose-inhibited division protein A-related BER93_17770 IPR004416 Glucose-inhibited division protein A BER93_17770 IPR020595 Glucose-inhibited division protein A-related, conserved site BER93_17770 IPR026904 GidA associated domain 3 BER93_17770 IPR036188 BER93_17770 BER93_17785 IPR000687 RIO kinase BER93_17785 IPR011009 Protein kinase-like domain BER93_17785 IPR018935 RIO kinase, conserved site BER93_17795 IPR001034 HTH DeoR N-terminal domain BER93_17795 IPR014036 DeoR C-terminal sensor domain BER93_17795 IPR018356 Transcription regulator, HTH DeoR-type, conserved site BER93_17795 IPR036390 BER93_17795 BER93_17795 IPR037171 BER93_17795 BER93_17800 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase BER93_17800 IPR006076 FAD dependent oxidoreductase BER93_17800 IPR031656 BER93_17800 BER93_17800 IPR036188 BER93_17800 BER93_17800 IPR038299 BER93_17800 BER93_17805 IPR000425 Major intrinsic protein BER93_17805 IPR022357 Major intrinsic protein, conserved site BER93_17805 IPR023271 Aquaporin-like BER93_17810 IPR000577 BER93_17810 BER93_17810 IPR005999 Glycerol kinase BER93_17810 IPR018483 Carbohydrate kinase, FGGY, conserved site BER93_17810 IPR018484 Carbohydrate kinase, FGGY, N-terminal BER93_17810 IPR018485 Carbohydrate kinase, FGGY, C-terminal BER93_17820 IPR002514 Transposase IS3/IS911family BER93_17820 IPR009057 Homeodomain-like BER93_17835 IPR001567 Peptidase M3A/M3B BER93_17835 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BER93_17845 IPR002123 Phospholipid/glycerol acyltransferase BER93_17850 IPR000352 Peptide chain release factor class I/class II BER93_17855 IPR018637 Domain of unknown function DUF2059 BER93_17865 IPR036249 BER93_17865 BER93_17880 IPR004147 UbiB domain BER93_17880 IPR010232 Probable protein kinase UbiB BER93_17880 IPR011009 Protein kinase-like domain BER93_17885 IPR003033 SCP2 sterol-binding domain BER93_17895 IPR009760 Protein of unknown function DUF1328 BER93_17900 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase BER93_17900 IPR036291 BER93_17900 BER93_17905 IPR000873 AMP-dependent synthetase/ligase BER93_17905 IPR020845 AMP-binding, conserved site BER93_17910 IPR005358 Putative zinc- or iron-chelating domain containing protein BER93_17915 IPR000073 Alpha/beta hydrolase fold-1 BER93_17915 IPR000639 Epoxide hydrolase-like BER93_17915 IPR029058 Alpha/Beta hydrolase fold BER93_17935 IPR000361 FeS cluster biogenesis BER93_17935 IPR016092 FeS cluster insertion protein BER93_17935 IPR017870 FeS cluster insertion, C-terminal, conserved site BER93_17935 IPR023063 Iron-sulfur cluster insertion protein ErpA BER93_17935 IPR035903 BER93_17935 BER93_17940 IPR007607 Protein of unknown function DUF583 BER93_17950 IPR025196 Domain of unknown function DUF4126 BER93_17955 IPR000160 GGDEF domain BER93_17955 IPR001633 EAL domain BER93_17955 IPR001789 Signal transduction response regulator, receiver domain BER93_17955 IPR011006 CheY-like superfamily BER93_17955 IPR029787 Nucleotide cyclase BER93_17955 IPR035919 BER93_17955 BER93_17960 IPR001789 Signal transduction response regulator, receiver domain BER93_17960 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_17960 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_17960 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_17960 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain BER93_17960 IPR011006 CheY-like superfamily BER93_17960 IPR036097 BER93_17960 BER93_17960 IPR036641 BER93_17960 BER93_17960 IPR036890 BER93_17960 BER93_17965 IPR002024 Bacterioferritin BER93_17965 IPR008331 Ferritin/DPS protein domain BER93_17965 IPR009078 Ferritin-like superfamily BER93_17965 IPR012347 Ferritin-related BER93_17970 IPR007419 BFD-like [2Fe-2S]-binding domain BER93_17975 IPR000086 NUDIX hydrolase domain BER93_17975 IPR015797 NUDIX hydrolase domain-like BER93_17975 IPR020084 NUDIX hydrolase, conserved site BER93_17975 IPR022927 RNA pyrophosphohydrolase RppH BER93_17990 IPR000754 Ribosomal protein S9 BER93_17990 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_17990 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_17990 IPR020574 Ribosomal protein S9, conserved site BER93_17990 IPR023035 Ribosomal protein S9, bacterial/plastid BER93_17995 IPR005822 Ribosomal protein L13 BER93_17995 IPR005823 Ribosomal protein L13, bacterial-type BER93_17995 IPR023563 Ribosomal protein L13, conserved site BER93_17995 IPR036899 BER93_17995 BER93_18000 IPR009078 Ferritin-like superfamily BER93_18000 IPR011566 Ubiquinone biosynthesis protein Coq7 BER93_18000 IPR012347 Ferritin-related BER93_18010 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic BER93_18010 IPR009165 S-adenosylmethionine decarboxylase, bacterial BER93_18010 IPR016067 S-adenosylmethionine decarboxylase, core BER93_18015 IPR000595 Cyclic nucleotide-binding domain BER93_18015 IPR012318 Helix-turn-helix motif, Crp-type BER93_18015 IPR014710 RmlC-like jelly roll fold BER93_18015 IPR018335 Transcription regulator HTH, Crp-type, conserved site BER93_18015 IPR018490 Cyclic nucleotide-binding-like BER93_18015 IPR036388 BER93_18015 BER93_18015 IPR036390 BER93_18015 BER93_18020 IPR023214 HAD-like domain BER93_18020 IPR036412 BER93_18020 BER93_18025 IPR001468 Indole-3-glycerol phosphate synthase, conserved site BER93_18025 IPR011060 Ribulose-phosphate binding barrel BER93_18025 IPR013785 Aldolase-type TIM barrel BER93_18025 IPR013798 Indole-3-glycerol phosphate synthase BER93_18030 IPR000312 Glycosyl transferase, family 3 BER93_18030 IPR005940 Anthranilate phosphoribosyl transferase BER93_18030 IPR017459 Glycosyl transferase family 3, N-terminal domain BER93_18030 IPR035902 BER93_18030 BER93_18030 IPR036320 BER93_18030 BER93_18040 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain BER93_18040 IPR017926 Glutamine amidotransferase BER93_18040 IPR029062 Class I glutamine amidotransferase-like BER93_18060 IPR000192 Aminotransferase class V domain BER93_18060 IPR012703 2-aminoethylphosphonate--pyruvate transaminase BER93_18060 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_18060 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_18060 IPR015424 Pyridoxal phosphate-dependent transferase BER93_18060 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase BER93_18065 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme BER93_18065 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_18065 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_18065 IPR015424 Pyridoxal phosphate-dependent transferase BER93_18070 IPR005804 Fatty acid desaturase, type 1 BER93_18075 IPR011697 Peptidase C26 BER93_18075 IPR029062 Class I glutamine amidotransferase-like BER93_18080 IPR001123 Lysine-type exporter protein (LYSE/YGGA) BER93_18085 IPR029062 Class I glutamine amidotransferase-like BER93_18085 IPR033752 BER93_18085 BER93_18090 IPR008146 Glutamine synthetase, catalytic domain BER93_18090 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_18090 IPR036651 BER93_18090 BER93_18095 IPR005256 Anthranilate synthase component I, PabB-like BER93_18095 IPR005801 ADC synthase BER93_18095 IPR006805 Anthranilate synthase component I, N-terminal BER93_18095 IPR015890 Chorismate binding, C-terminal BER93_18095 IPR019999 Anthranilate synthase component I - like BER93_18100 IPR001206 Diacylglycerol kinase, catalytic domain BER93_18100 IPR005218 Diacylglycerol/lipid kinase BER93_18100 IPR016064 ATP-NAD kinase-like domain BER93_18100 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 BER93_18100 IPR022433 Lipid kinase YegS BER93_18105 IPR000182 GNAT domain BER93_18105 IPR016181 Acyl-CoA N-acyltransferase BER93_18110 IPR000056 Ribulose-phosphate 3-epimerase-like BER93_18110 IPR011060 Ribulose-phosphate binding barrel BER93_18110 IPR013785 Aldolase-type TIM barrel BER93_18110 IPR026019 Ribulose-phosphate 3-epimerase BER93_18115 IPR011250 Outer membrane protein/outer membrane enzyme PagP , beta-barrel BER93_18115 IPR027385 Outer membrane protein beta-barrel BER93_18120 IPR001623 DnaJ domain BER93_18120 IPR036869 BER93_18120 BER93_18125 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase BER93_18125 IPR018236 SAICAR synthetase, conserved site BER93_18125 IPR028923 SAICAR synthetase/ADE2, N-terminal BER93_18135 IPR002559 Transposase, IS4-like BER93_18140 IPR009305 Protein of unknown function DUF962 BER93_18150 IPR002559 Transposase, IS4-like BER93_18155 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain BER93_18155 IPR036291 BER93_18155 BER93_18160 IPR001516 NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal BER93_18160 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase BER93_18160 IPR007182 Na+/H+ antiporter MnhB subunit-related protein BER93_18160 IPR025383 Domain of unknown function DUF4040 BER93_18165 IPR039428 BER93_18165 BER93_18170 IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase BER93_18170 IPR003918 NADH:ubiquinone oxidoreductase BER93_18175 IPR002758 Na+/H+ antiporter subunit E BER93_18180 IPR007208 Na(+)/H(+) antiporter subunit F-like BER93_18185 IPR005133 Na+/H+ antiporter subunit G BER93_18190 IPR002559 Transposase, IS4-like BER93_18190 IPR008490 Transposase InsH, N-terminal BER93_18195 IPR023198 Phosphoglycolate phosphatase, domain 2 BER93_18195 IPR023214 HAD-like domain BER93_18195 IPR036412 BER93_18195 BER93_18200 IPR002048 EF-hand domain BER93_18200 IPR011992 EF-hand domain pair BER93_18200 IPR018247 EF-Hand 1, calcium-binding site BER93_18205 IPR002048 EF-hand domain BER93_18205 IPR011992 EF-hand domain pair BER93_18205 IPR018247 EF-Hand 1, calcium-binding site BER93_18215 IPR017143 Uncharacterised conserved protein UCP037225 BER93_18215 IPR025990 Cysteine-rich CPXCG protein BER93_18220 IPR000755 Peptidase M15D, VanX D-ala-D-ala dipeptidase BER93_18220 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain BER93_18225 IPR002502 N-acetylmuramoyl-L-alanine amidase domain BER93_18225 IPR036505 BER93_18225 BER93_18230 IPR000064 Endopeptidase, NLPC/P60 domain BER93_18230 IPR026864 SH3b2-type SH3 domain BER93_18230 IPR027017 Uncharacterised peptidase with NlpC/P60 domain, YkfC type BER93_18230 IPR038765 BER93_18230 BER93_18230 IPR039439 BER93_18230 BER93_18235 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BER93_18235 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BER93_18235 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site BER93_18235 IPR029017 Enolase N-terminal domain-like BER93_18235 IPR029065 Enolase C-terminal domain-like BER93_18235 IPR036849 BER93_18235 BER93_18245 IPR002293 Amino acid/polyamine transporter I BER93_18265 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase BER93_18265 IPR011042 Six-bladed beta-propeller, TolB-like BER93_18265 IPR012938 Glucose/Sorbosone dehydrogenase BER93_18270 IPR001764 Glycoside hydrolase, family 3, N-terminal BER93_18270 IPR002772 Glycoside hydrolase family 3 C-terminal domain BER93_18270 IPR013783 Immunoglobulin-like fold BER93_18270 IPR017853 Glycoside hydrolase, superfamily BER93_18270 IPR019800 Glycoside hydrolase, family 3, active site BER93_18270 IPR026891 Fibronectin type III-like domain BER93_18270 IPR036881 BER93_18270 BER93_18270 IPR036962 BER93_18270 BER93_18275 IPR006156 Dihydroneopterin aldolase BER93_18275 IPR006157 Dihydroneopterin aldolase/epimerase domain BER93_18280 IPR000905 Gcp-like domain BER93_18280 IPR017860 Peptidase M22, conserved site BER93_18280 IPR017861 Kae1/YgjD family BER93_18280 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD BER93_18285 IPR001911 Ribosomal protein S21 BER93_18285 IPR018278 Ribosomal protein S21, conserved site BER93_18285 IPR038380 BER93_18285 BER93_18290 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related BER93_18290 IPR019004 Uncharacterised domain YOR215C, mitochondrial BER93_18290 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal BER93_18295 IPR017039 Virulence factor BrkB BER93_18300 IPR002694 Zinc finger, CHC2-type BER93_18300 IPR006171 Toprim domain BER93_18300 IPR006295 DNA primase, DnaG BER93_18300 IPR013173 DNA primase DnaG, DnaB-binding domain BER93_18300 IPR013264 DNA primase, catalytic core, N-terminal BER93_18300 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BER93_18300 IPR019475 DNA primase, DnaB-helicase binding domain BER93_18300 IPR030846 BER93_18300 BER93_18300 IPR036977 BER93_18300 BER93_18300 IPR037068 BER93_18300 BER93_18305 IPR016833 Putative sodium bile acid cotransporter BER93_18305 IPR038770 BER93_18305 BER93_18315 IPR000537 UbiA prenyltransferase family BER93_18315 IPR006369 Protohaem IX farnesyltransferase BER93_18315 IPR030470 BER93_18315 BER93_18320 IPR003780 COX15/CtaA family BER93_18325 IPR036249 BER93_18325 BER93_18330 IPR002994 Surfeit locus 1/Shy1 BER93_18335 IPR021313 Protein of unknown function DUF2909 BER93_18340 IPR000298 Cytochrome c oxidase subunit III domain BER93_18340 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle BER93_18340 IPR035973 BER93_18340 BER93_18345 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 BER93_18345 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain BER93_18350 IPR000883 Cytochrome c oxidase subunit I BER93_18350 IPR014241 Cytochrome c oxidase, subunit I bacterial type BER93_18350 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site BER93_18350 IPR036927 BER93_18350 BER93_18355 IPR001505 Copper centre Cu(A) BER93_18355 IPR002429 Cytochrome c oxidase subunit II C-terminal BER93_18355 IPR008972 Cupredoxin BER93_18355 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain BER93_18355 IPR014222 Cytochrome c oxidase, subunit II BER93_18355 IPR036257 BER93_18355 BER93_18360 IPR019253 Protein of unknown function DUF2244, transmembrane BER93_18365 IPR002872 Proline dehydrogenase domain BER93_18365 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 BER93_18365 IPR015590 Aldehyde dehydrogenase domain BER93_18365 IPR016160 Aldehyde dehydrogenase, cysteine active site BER93_18365 IPR016161 Aldehyde/histidinol dehydrogenase BER93_18365 IPR016162 Aldehyde dehydrogenase, N-terminal BER93_18365 IPR016163 Aldehyde dehydrogenase, C-terminal BER93_18365 IPR024082 Proline dehydrogenase PutA, domain II BER93_18365 IPR024089 Proline dehydrogenase PutA, domain I/II BER93_18365 IPR025703 Bifunctional protein PutA BER93_18365 IPR029041 FAD-linked oxidoreductase-like BER93_18370 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_18370 IPR002305 Aminoacyl-tRNA synthetase, class Ic BER93_18370 IPR002307 Tyrosine-tRNA ligase BER93_18370 IPR002942 RNA-binding S4 domain BER93_18370 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_18370 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 BER93_18370 IPR036986 BER93_18370 BER93_18375 IPR007340 Opacity-associated protein A BER93_18375 IPR011055 Duplicated hybrid motif BER93_18375 IPR016047 Peptidase M23 BER93_18380 IPR005338 Anhydro-N-acetylmuramic acid kinase BER93_18390 IPR011701 Major facilitator superfamily BER93_18390 IPR036259 BER93_18390 BER93_18400 IPR004808 AP endonuclease 1 BER93_18400 IPR005135 Endonuclease/exonuclease/phosphatase BER93_18400 IPR020847 AP endonuclease 1, binding site BER93_18400 IPR036691 BER93_18400 BER93_18405 IPR000836 Phosphoribosyltransferase domain BER93_18405 IPR004467 Orotate phosphoribosyl transferase domain BER93_18405 IPR023031 Orotate phosphoribosyltransferase BER93_18405 IPR029057 Phosphoribosyltransferase-like BER93_18415 IPR025669 AAA domain BER93_18415 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18420 IPR003115 ParB/Sulfiredoxin BER93_18420 IPR004437 ParB/RepB/Spo0J partition protein family BER93_18420 IPR036086 BER93_18420 BER93_18435 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain BER93_18435 IPR036291 BER93_18435 BER93_18440 IPR001173 Glycosyltransferase 2-like BER93_18440 IPR029044 Nucleotide-diphospho-sugar transferases BER93_18445 IPR011499 Lipid A biosynthesis BER93_18445 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis BER93_18450 IPR036515 BER93_18450 BER93_18455 IPR005841 Alpha-D-phosphohexomutase superfamily BER93_18455 IPR005843 Alpha-D-phosphohexomutase, C-terminal BER93_18455 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I BER93_18455 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II BER93_18455 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III BER93_18455 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III BER93_18455 IPR036900 BER93_18455 BER93_18460 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase BER93_18460 IPR029054 dUTPase-like BER93_18460 IPR036157 BER93_18460 BER93_18465 IPR003382 Flavoprotein BER93_18465 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC BER93_18465 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal BER93_18465 IPR035929 BER93_18465 BER93_18465 IPR036551 BER93_18465 BER93_18470 IPR001405 RadC protein BER93_18470 IPR010994 RuvA domain 2-like BER93_18470 IPR020891 Uncharacterised protein family UPF0758, conserved site BER93_18470 IPR025657 RadC-like JAB domain BER93_18475 IPR001278 Arginine-tRNA ligase BER93_18475 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site BER93_18475 IPR005148 Arginyl tRNA synthetase N-terminal domain BER93_18475 IPR008909 DALR anticodon binding BER93_18475 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding BER93_18475 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_18475 IPR035684 BER93_18475 BER93_18475 IPR036695 BER93_18475 BER93_18480 IPR007730 Sporulation-related domain BER93_18480 IPR036680 BER93_18480 BER93_18485 IPR002347 Glucose/ribitol dehydrogenase BER93_18485 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_18485 IPR036291 BER93_18485 BER93_18515 IPR004276 Glycosyl transferase, family 28 BER93_18520 IPR000873 AMP-dependent synthetase/ligase BER93_18520 IPR001031 Thioesterase BER93_18520 IPR001242 Condensation domain BER93_18520 IPR006162 Phosphopantetheine attachment site BER93_18520 IPR009081 Acyl carrier protein-like BER93_18520 IPR010071 Amino acid adenylation domain BER93_18520 IPR020802 Polyketide synthase, thioesterase domain BER93_18520 IPR020806 Polyketide synthase, phosphopantetheine-binding domain BER93_18520 IPR020845 AMP-binding, conserved site BER93_18520 IPR023213 Chloramphenicol acetyltransferase-like domain BER93_18520 IPR025110 AMP-binding enzyme C-terminal domain BER93_18520 IPR029058 Alpha/Beta hydrolase fold BER93_18520 IPR036736 BER93_18520 BER93_18525 IPR002559 Transposase, IS4-like BER93_18525 IPR008490 Transposase InsH, N-terminal BER93_18530 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_18530 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_18530 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_18530 IPR036097 BER93_18530 BER93_18530 IPR036890 BER93_18530 BER93_18535 IPR001789 Signal transduction response regulator, receiver domain BER93_18535 IPR001867 Signal transduction response regulator, C-terminal BER93_18535 IPR011006 CheY-like superfamily BER93_18535 IPR036388 BER93_18535 BER93_18545 IPR001269 tRNA-dihydrouridine synthase BER93_18545 IPR004653 tRNA-dihydrouridine synthase, TIM-barrel, YjbN BER93_18545 IPR013785 Aldolase-type TIM barrel BER93_18545 IPR018517 tRNA-dihydrouridine synthase, conserved site BER93_18550 IPR002559 Transposase, IS4-like BER93_18560 IPR002110 Ankyrin repeat BER93_18560 IPR020683 Ankyrin repeat-containing domain BER93_18560 IPR036770 BER93_18560 BER93_18565 IPR002226 Catalase haem-binding site BER93_18565 IPR010582 Catalase immune-responsive domain BER93_18565 IPR011614 Catalase core domain BER93_18565 IPR018028 Catalase, mono-functional, haem-containing BER93_18565 IPR020835 Catalase-like domain BER93_18565 IPR024708 Catalase active site BER93_18565 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 BER93_18565 IPR037060 BER93_18565 BER93_18570 IPR006555 ATP-dependent helicase, C-terminal BER93_18570 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18570 IPR039000 BER93_18570 BER93_18580 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BER93_18580 IPR011342 Shikimate dehydrogenase BER93_18580 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal BER93_18580 IPR022893 Shikimate, quinate/shikimate dehydrogenase BER93_18580 IPR036291 BER93_18580 BER93_18590 IPR001094 Flavodoxin BER93_18590 IPR001433 Oxidoreductase FAD/NAD(P)-binding BER93_18590 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase BER93_18590 IPR005625 PepSY-associated TM helix BER93_18590 IPR008254 Flavodoxin/nitric oxide synthase BER93_18590 IPR017938 Riboflavin synthase-like beta-barrel BER93_18590 IPR029039 Flavoprotein-like BER93_18590 IPR039261 BER93_18590 BER93_18595 IPR001731 Porphobilinogen synthase BER93_18595 IPR013785 Aldolase-type TIM barrel BER93_18595 IPR030656 BER93_18595 BER93_18635 IPR003824 Undecaprenyl-diphosphatase UppP BER93_18640 IPR004809 Glutamine synthetase type I BER93_18640 IPR008146 Glutamine synthetase, catalytic domain BER93_18640 IPR008147 Glutamine synthetase, beta-Grasp BER93_18640 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain BER93_18640 IPR027302 Glutamine synthetase, N-terminal conserved site BER93_18640 IPR027303 Glutamine synthetase, glycine-rich site BER93_18640 IPR036651 BER93_18640 BER93_18645 IPR002187 Nitrogen regulatory protein PII BER93_18645 IPR002332 Nitrogen regulatory protein P-II, urydylation site BER93_18645 IPR011322 Nitrogen regulatory PII-like, alpha/beta BER93_18645 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BER93_18645 IPR017918 Nitrogen regulatory protein PII, conserved site BER93_18650 IPR001905 Ammonium transporter BER93_18650 IPR002229 Blood group Rhesus C/E/D polypeptide BER93_18650 IPR018047 Ammonium transporter, conserved site BER93_18650 IPR024041 Ammonium transporter AmtB-like domain BER93_18650 IPR029020 Ammonium/urea transporter BER93_18655 IPR003594 Histidine kinase-like ATPase, C-terminal domain BER93_18655 IPR003661 Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain BER93_18655 IPR004358 Signal transduction histidine kinase-related protein, C-terminal BER93_18655 IPR013656 PAS fold-4 BER93_18655 IPR035965 BER93_18655 BER93_18655 IPR036097 BER93_18655 BER93_18655 IPR036890 BER93_18655 BER93_18660 IPR001789 Signal transduction response regulator, receiver domain BER93_18660 IPR002078 RNA polymerase sigma factor 54 interaction domain BER93_18660 IPR002197 DNA binding HTH domain, Fis-type BER93_18660 IPR003593 AAA+ ATPase domain BER93_18660 IPR009057 Homeodomain-like BER93_18660 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) BER93_18660 IPR011006 CheY-like superfamily BER93_18660 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BER93_18660 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BER93_18660 IPR025944 Sigma-54 interaction domain, conserved site BER93_18660 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18665 IPR001424 Superoxide dismutase, copper/zinc binding domain BER93_18665 IPR018152 Superoxide dismutase, copper/zinc, binding site BER93_18665 IPR036423 BER93_18665 BER93_18670 IPR001424 Superoxide dismutase, copper/zinc binding domain BER93_18670 IPR018152 Superoxide dismutase, copper/zinc, binding site BER93_18670 IPR036423 BER93_18670 BER93_18680 IPR025161 Putative transposase IS4/IS5 family BER93_18685 IPR011990 Tetratricopeptide-like helical domain BER93_18685 IPR019734 Tetratricopeptide repeat BER93_18700 IPR002123 Phospholipid/glycerol acyltransferase BER93_18705 IPR003736 Phenylacetic acid degradation-related domain BER93_18705 IPR006683 Thioesterase superfamily BER93_18705 IPR029069 HotDog domain BER93_18710 IPR001736 Phospholipase D/Transphosphatidylase BER93_18710 IPR025202 Phospholipase D-like domain BER93_18715 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BER93_18715 IPR036761 BER93_18715 BER93_18720 IPR013078 Histidine phosphatase superfamily, clade-1 BER93_18720 IPR029033 Histidine phosphatase superfamily BER93_18725 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_18725 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18735 IPR004776 Auxin efflux carrier BER93_18735 IPR038770 BER93_18735 BER93_18745 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain BER93_18745 IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II BER93_18745 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain BER93_18745 IPR029061 Thiamin diphosphate-binding fold BER93_18750 IPR021660 Protein of unknown function DUF3253 BER93_18750 IPR036388 BER93_18750 BER93_18750 IPR036390 BER93_18750 BER93_18755 IPR017804 Methyltransferase EgtD-like BER93_18755 IPR019257 Histidine-specific methyltransferase, SAM-dependent BER93_18755 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_18755 IPR035094 BER93_18755 BER93_18760 IPR005532 Formylglycine-generating sulphatase enzyme domain BER93_18760 IPR016187 C-type lectin fold BER93_18760 IPR017806 Ergothioneine biosynthesis protein EgtB BER93_18760 IPR024775 DinB-like domain BER93_18765 IPR000192 Aminotransferase class V domain BER93_18765 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 BER93_18765 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 BER93_18765 IPR015424 Pyridoxal phosphate-dependent transferase BER93_18770 IPR000515 MetI-like domain BER93_18770 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain BER93_18770 IPR035906 BER93_18770 BER93_18775 IPR003439 ABC transporter-like BER93_18775 IPR003593 AAA+ ATPase domain BER93_18775 IPR017871 ABC transporter, conserved site BER93_18775 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18780 IPR002048 EF-hand domain BER93_18780 IPR011992 EF-hand domain pair BER93_18780 IPR018247 EF-Hand 1, calcium-binding site BER93_18785 IPR003439 ABC transporter-like BER93_18785 IPR003593 AAA+ ATPase domain BER93_18785 IPR017871 ABC transporter, conserved site BER93_18785 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18790 IPR000485 AsnC-type HTH domain BER93_18790 IPR011008 Dimeric alpha-beta barrel BER93_18790 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BER93_18790 IPR019887 Transcription regulator AsnC-type, C-terminal BER93_18790 IPR019888 Transcription regulator AsnC-type BER93_18790 IPR036388 BER93_18790 BER93_18790 IPR036390 BER93_18790 BER93_18795 IPR005960 Phenylalanine-4-hydroxylase, monomeric form BER93_18795 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site BER93_18795 IPR019774 Aromatic amino acid hydroxylase, C-terminal BER93_18795 IPR036329 BER93_18795 BER93_18795 IPR036951 BER93_18795 BER93_18800 IPR002347 Glucose/ribitol dehydrogenase BER93_18800 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase BER93_18800 IPR020904 Short-chain dehydrogenase/reductase, conserved site BER93_18800 IPR036291 BER93_18800 BER93_18805 IPR007045 5-keto 4-deoxyuronate isomerase BER93_18805 IPR011051 RmlC-like cupin domain BER93_18805 IPR014710 RmlC-like jelly roll fold BER93_18805 IPR021120 KduI/IolB isomerase BER93_18805 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain BER93_18815 IPR000843 Transcription regulator HTH, LacI BER93_18815 IPR010982 Lambda repressor-like, DNA-binding domain BER93_18815 IPR028082 Periplasmic binding protein-like I BER93_18835 IPR036663 BER93_18835 BER93_18840 IPR013094 Alpha/beta hydrolase fold-3 BER93_18840 IPR029058 Alpha/Beta hydrolase fold BER93_18845 IPR002018 Carboxylesterase, type B BER93_18845 IPR019819 Carboxylesterase type B, conserved site BER93_18845 IPR019826 Carboxylesterase type B, active site BER93_18845 IPR029058 Alpha/Beta hydrolase fold BER93_18850 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BER93_18850 IPR023210 NADP-dependent oxidoreductase domain BER93_18850 IPR036812 BER93_18850 BER93_18855 IPR004193 Glycoside hydrolase, family 13, N-terminal BER93_18855 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_18855 IPR006048 Alpha-amylase, C-terminal all beta BER93_18855 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB BER93_18855 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_18855 IPR013783 Immunoglobulin-like fold BER93_18855 IPR014756 Immunoglobulin E-set BER93_18855 IPR017853 Glycoside hydrolase, superfamily BER93_18855 IPR037439 BER93_18855 BER93_18860 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_18860 IPR011009 Protein kinase-like domain BER93_18860 IPR012810 Trehalose synthase/alpha-amylase, N-terminal BER93_18860 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain BER93_18860 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_18860 IPR017853 Glycoside hydrolase, superfamily BER93_18860 IPR032091 BER93_18860 BER93_18865 IPR006047 Glycosyl hydrolase, family 13, catalytic domain BER93_18865 IPR013780 Glycosyl hydrolase, family 13, all-beta BER93_18865 IPR013783 Immunoglobulin-like fold BER93_18865 IPR017853 Glycoside hydrolase, superfamily BER93_18865 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S BER93_18865 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase BER93_18920 IPR002559 Transposase, IS4-like BER93_18925 IPR025161 Putative transposase IS4/IS5 family BER93_18935 IPR001547 Glycoside hydrolase, family 5 BER93_18935 IPR017853 Glycoside hydrolase, superfamily BER93_18945 IPR001547 Glycoside hydrolase, family 5 BER93_18945 IPR017853 Glycoside hydrolase, superfamily BER93_18945 IPR018087 Glycoside hydrolase, family 5, conserved site BER93_18950 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site BER93_18950 IPR011032 GroES (chaperonin 10)-like BER93_18950 IPR013149 Alcohol dehydrogenase, C-terminal BER93_18950 IPR013154 Alcohol dehydrogenase GroES-like BER93_18950 IPR020843 Polyketide synthase, enoylreductase BER93_18950 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BER93_18950 IPR036291 BER93_18950 BER93_18955 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 BER93_18955 IPR009051 Alpha-helical ferredoxin BER93_18955 IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain BER93_18955 IPR028261 Dihydroprymidine dehydrogenase domain II BER93_18955 IPR036188 BER93_18955 BER93_18960 IPR002489 Glutamate synthase, alpha subunit, C-terminal BER93_18960 IPR002932 Glutamate synthase domain BER93_18960 IPR006982 Glutamate synthase, central-N BER93_18960 IPR013785 Aldolase-type TIM barrel BER93_18960 IPR017932 Glutamine amidotransferase type 2 domain BER93_18960 IPR029055 Nucleophile aminohydrolases, N-terminal BER93_18960 IPR036485 BER93_18960 BER93_18965 IPR021719 Proteinase inhibitor I78 BER93_18975 IPR008909 DALR anticodon binding BER93_18975 IPR015944 Glycine-tRNA ligase, beta subunit BER93_18980 IPR002310 Glycine-tRNA ligase, alpha subunit BER93_18985 IPR001482 Type II secretion system protein E BER93_18985 IPR003593 AAA+ ATPase domain BER93_18985 IPR007831 General secretory system II, protein E, N-terminal BER93_18985 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_18985 IPR037257 BER93_18985 BER93_18990 IPR017926 Glutamine amidotransferase BER93_18990 IPR029062 Class I glutamine amidotransferase-like BER93_19000 IPR002033 Sec-independent periplasmic protein translocase TatC BER93_19000 IPR019820 Sec-independent periplasmic protein translocase, conserved site BER93_19005 IPR003369 Sec-independent protein translocase protein TatA/B/E BER93_19005 IPR018448 Twin-arginine translocation protein TatB BER93_19010 IPR003369 Sec-independent protein translocase protein TatA/B/E BER93_19010 IPR006312 Sec-independent protein translocase protein TatA/E BER93_19015 IPR007461 Ysc84 actin-binding domain BER93_19020 IPR001015 Ferrochelatase BER93_19020 IPR019772 Ferrochelatase, active site BER93_19025 IPR000073 Alpha/beta hydrolase fold-1 BER93_19025 IPR029058 Alpha/Beta hydrolase fold BER93_19030 IPR002725 Protein of unknown function DUF45 BER93_19035 IPR007476 Putative exonuclease, RdgC BER93_19040 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase BER93_19040 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA BER93_19040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BER93_19040 IPR035107 BER93_19040 BER93_19050 IPR000843 Transcription regulator HTH, LacI BER93_19050 IPR010982 Lambda repressor-like, DNA-binding domain BER93_19050 IPR028082 Periplasmic binding protein-like I BER93_19060 IPR011100 Glycosyl hydrolase family 67 middle BER93_19060 IPR017853 Glycoside hydrolase, superfamily BER93_19075 IPR001584 Integrase, catalytic core BER93_19080 IPR001584 Integrase, catalytic core BER93_19080 IPR012337 Ribonuclease H-like domain BER93_19080 IPR025948 HTH-like domain BER93_19080 IPR036397 BER93_19080 BER93_19085 IPR002514 Transposase IS3/IS911family BER93_19085 IPR009057 Homeodomain-like BER93_19090 IPR017035 Uncharacterised conserved protein UCP035009, HsdR, All3000-type BER93_19090 IPR029464 Type I restriction enzyme R protein, N-terminal domain BER93_19100 IPR002559 Transposase, IS4-like BER93_19100 IPR025161 Putative transposase IS4/IS5 family BER93_19110 IPR016053 Haem oxygenase-like BER93_19110 IPR016084 Haem oxygenase-like, multi-helical BER93_19120 IPR001958 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG BER93_19120 IPR036259 BER93_19120 BER93_19125 IPR002477 Peptidoglycan binding-like BER93_19125 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase BER93_19125 IPR011013 Galactose mutarotase-like domain BER93_19125 IPR011970 Lytic murein transglycosylase BER93_19125 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup BER93_19125 IPR023346 Lysozyme-like domain BER93_19125 IPR031304 BER93_19125 BER93_19125 IPR036365 BER93_19125 BER93_19125 IPR036366 BER93_19125 BER93_19135 IPR023006 Uncharacterised protein family UPF0225 BER93_19135 IPR032710 BER93_19135 BER93_19140 IPR002781 Transmembrane protein TauE like BER93_19150 IPR014544 Uncharacterised conserved protein UCP028408 BER93_19150 IPR024534 Domain of unknown function DUF2220 BER93_19150 IPR024537 Domain of unknown function DUF3322 BER93_19165 IPR025449 Protein of unknown function DUF4194 BER93_19170 IPR021804 Protein of unknown function DUF3375 BER93_19175 IPR002559 Transposase, IS4-like BER93_19180 IPR001474 GTP cyclohydrolase I BER93_19180 IPR018234 GTP cyclohydrolase I, conserved site BER93_19180 IPR020602 GTP cyclohydrolase I domain BER93_19185 IPR005828 General substrate transporter BER93_19185 IPR005829 Sugar transporter, conserved site BER93_19185 IPR036259 BER93_19185 BER93_19205 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BER93_19205 IPR035093 BER93_19205 BER93_19215 IPR002559 Transposase, IS4-like BER93_19215 IPR008490 Transposase InsH, N-terminal BER93_19230 IPR001387 Cro/C1-type helix-turn-helix domain BER93_19230 IPR010982 Lambda repressor-like, DNA-binding domain BER93_19230 IPR013430 Toxin-antitoxin system, antidote protein, HigA BER93_19235 IPR007711 Plasmid maintenance system killer BER93_19235 IPR035093 BER93_19235 BER93_19240 IPR006344 Exodeoxyribonuclease V, alpha subunit BER93_19240 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19240 IPR027785 UvrD-like helicase C-terminal domain BER93_19245 IPR004586 Exodeoxyribonuclease V, beta subunit BER93_19245 IPR011335 Restriction endonuclease type II-like BER93_19245 IPR011604 Exonuclease, phage-type/RecB, C-terminal BER93_19245 IPR014017 DNA helicase, UvrD-like, C-terminal BER93_19245 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19245 IPR034739 BER93_19245 BER93_19245 IPR038726 BER93_19245 BER93_19250 IPR006697 Exodeoxyribonuclease V, gamma subunit BER93_19250 IPR011335 Restriction endonuclease type II-like BER93_19250 IPR013986 DExx box DNA helicase domain BER93_19250 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19255 IPR003439 ABC transporter-like BER93_19255 IPR003593 AAA+ ATPase domain BER93_19255 IPR017871 ABC transporter, conserved site BER93_19255 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19260 IPR003453 Permease domain BER93_19260 IPR030802 BER93_19260 BER93_19265 IPR003399 Mammalian cell entry-related BER93_19265 IPR030970 BER93_19265 BER93_19270 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BER93_19275 IPR002645 STAS domain BER93_19275 IPR036513 BER93_19275 BER93_19280 IPR007428 VacJ-like lipoprotein BER93_19290 IPR000889 Glutathione peroxidase BER93_19290 IPR029759 Glutathione peroxidase active site BER93_19290 IPR036249 BER93_19290 BER93_19300 IPR003798 DNA recombination RmuC BER93_19310 IPR002293 Amino acid/polyamine transporter I BER93_19320 IPR000014 PAS domain BER93_19320 IPR000160 GGDEF domain BER93_19320 IPR003018 GAF domain BER93_19320 IPR013656 PAS fold-4 BER93_19320 IPR029016 GAF domain-like BER93_19320 IPR029787 Nucleotide cyclase BER93_19320 IPR035965 BER93_19320 BER93_19325 IPR004381 Glycerate kinase BER93_19325 IPR018193 Glycerate kinase, flavodoxin-like domain BER93_19325 IPR018197 Glycerate kinase, restriction-enzyme-like fold BER93_19325 IPR036129 BER93_19325 BER93_19340 IPR015947 PUA-like domain BER93_19340 IPR019614 S-adenosylmethionine-dependent methyltransferase BER93_19340 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase-like BER93_19340 IPR036974 BER93_19340 BER93_19345 IPR005496 Integral membrane protein TerC BER93_19345 IPR022369 Integral membrane protein TerC, riboswitch-linked BER93_19355 IPR002514 Transposase IS3/IS911family BER93_19355 IPR009057 Homeodomain-like BER93_19365 IPR004520 tRNA modification GTPase MnmE BER93_19365 IPR005225 Small GTP-binding protein domain BER93_19365 IPR006073 GTP binding domain BER93_19365 IPR018948 GTP-binding protein TrmE, N-terminal BER93_19365 IPR025867 tRNA modification GTPase MnmE C-terminal domain BER93_19365 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 BER93_19365 IPR027368 tRNA modification GTPase MnmE domain 2 BER93_19365 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19370 IPR001708 Membrane insertase OXA1/ALB3/YidC BER93_19370 IPR019998 Membrane insertase YidC BER93_19370 IPR028053 Membrane insertase YidC, N-terminal BER93_19370 IPR028055 Membrane insertase YidC/Oxa1, C-terminal BER93_19370 IPR038210 BER93_19370 BER93_19370 IPR038221 BER93_19370 BER93_19375 IPR000100 Ribonuclease P BER93_19375 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BER93_19375 IPR020539 Ribonuclease P, conserved site BER93_19375 IPR020568 Ribosomal protein S5 domain 2-type fold BER93_19380 IPR000271 Ribosomal protein L34 BER93_19380 IPR020939 Ribosomal protein L34, conserved site BER93_19400 IPR003115 ParB/Sulfiredoxin BER93_19400 IPR004437 ParB/RepB/Spo0J partition protein family BER93_19400 IPR013741 Transcriptional repressor protein KorB BER93_19400 IPR036086 BER93_19400 BER93_19405 IPR025669 AAA domain BER93_19405 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19410 IPR013324 RNA polymerase sigma factor, region 3/4 BER93_19410 IPR032428 BER93_19410 BER93_19415 IPR010751 TrfA BER93_19425 IPR025054 Domain of unknown function DUF3991 BER93_19440 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 BER93_19445 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB BER93_19450 IPR004346 CagE, TrbE, VirB component of type IV transporter system BER93_19450 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain BER93_19450 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19455 IPR014158 Type IV secretion system, VirB5 BER93_19455 IPR023220 Type IV secretion system, VirB5-domain BER93_19465 IPR007688 Conjugal transfer, TrbL/VirB6 BER93_19470 IPR007430 Bacterial virulence protein VirB8 BER93_19470 IPR032710 BER93_19470 BER93_19475 IPR010258 Conjugal transfer, TrbG/VirB9/CagX BER93_19475 IPR038161 BER93_19475 BER93_19480 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI BER93_19485 IPR001482 Type II secretion system protein E BER93_19485 IPR014155 Type IV secretion system protein VirB11 BER93_19485 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19490 IPR003688 Ti-type conjugative transfer system, TraG-like BER93_19490 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19500 IPR008258 Lytic transglycosylase-like SLT domain BER93_19500 IPR023346 Lysozyme-like domain BER93_19505 IPR022191 Protein of unknown function DUF3717 BER93_19510 IPR006118 Recombinase, conserved site BER93_19510 IPR006119 Resolvase, N-terminal BER93_19510 IPR009057 Homeodomain-like BER93_19510 IPR036162 BER93_19510 BER93_19520 IPR007337 RelB antitoxin/Antitoxin DinJ BER93_19520 IPR013321 Arc-type ribbon-helix-helix BER93_19525 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BER93_19525 IPR035093 BER93_19525 BER93_19550 IPR005094 Endonuclease relaxase, MobA/VirD2 BER93_19555 IPR008687 Bacterial mobilisation BER93_19570 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BER93_19570 IPR035093 BER93_19570 BER93_19575 IPR002145 Ribbon-helix-helix protein, copG BER93_19575 IPR010985 Ribbon-helix-helix BER93_19575 IPR013321 Arc-type ribbon-helix-helix BER93_19585 IPR006118 Recombinase, conserved site BER93_19585 IPR006119 Resolvase, N-terminal BER93_19585 IPR009057 Homeodomain-like BER93_19585 IPR036162 BER93_19585 BER93_19590 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_19590 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19605 IPR013321 Arc-type ribbon-helix-helix BER93_19620 IPR003688 Ti-type conjugative transfer system, TraG-like BER93_19620 IPR027417 P-loop containing nucleoside triphosphate hydrolase BER93_19640 IPR007337 RelB antitoxin/Antitoxin DinJ BER93_19640 IPR013321 Arc-type ribbon-helix-helix BER93_19650 IPR006118 Recombinase, conserved site BER93_19650 IPR006119 Resolvase, N-terminal BER93_19650 IPR009057 Homeodomain-like BER93_19650 IPR036162 BER93_19650 BER93_19660 IPR022231 Protein of unknown function DUF3757 BER93_19680 IPR007159 AbrB-like domain BER93_19680 IPR037914 BER93_19680 BER93_19685 IPR002716 PIN domain BER93_19685 IPR029060 PIN domain-like BER93_19700 IPR006118 Recombinase, conserved site BER93_19700 IPR006119 Resolvase, N-terminal BER93_19700 IPR009057 Homeodomain-like BER93_19700 IPR036162 BER93_19700