BER93_00005 PF00308 Bacterial dnaA protein BER93_00005 PF08299 Bacterial dnaA protein helix-turn-helix BER93_00005 PF11638 DnaA N-terminal domain BER93_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BER93_00010 PF02767 DNA polymerase III beta subunit, central domain BER93_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BER93_00020 PF02463 RecF/RecN/SMC N terminal domain BER93_00025 PF00204 DNA gyrase B BER93_00025 PF00986 DNA gyrase B subunit, carboxyl terminus BER93_00025 PF01751 Toprim domain BER93_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_00030 PF02517 CAAX protease self-immunity BER93_00035 PF01435 Peptidase family M48 BER93_00040 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) BER93_00040 PF13181 Tetratricopeptide repeat BER93_00040 PF13432 Tetratricopeptide repeat BER93_00045 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_00050 PF01618 BER93_00050 BER93_00055 PF02472 Biopolymer transport protein ExbD/TolR BER93_00060 PF02472 Biopolymer transport protein ExbD/TolR BER93_00065 PF02077 BER93_00065 BER93_00075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BER93_00085 PF13091 PLD-like domain BER93_00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BER93_00105 PF01694 Rhomboid family BER93_00110 PF08850 BER93_00110 BER93_00115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_00115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER93_00120 PF03572 Peptidase family S41 BER93_00120 PF13180 PDZ domain BER93_00125 PF01551 Peptidase family M23 BER93_00130 PF02225 PA domain BER93_00130 PF04389 Peptidase family M28 BER93_00135 PF13670 BER93_00135 BER93_00145 PF01565 FAD binding domain BER93_00145 PF02913 FAD linked oxidases, C-terminal domain BER93_00165 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_00175 PF01343 Peptidase family S49 BER93_00180 PF01554 MatE BER93_00190 PF11304 BER93_00190 BER93_00200 PF00270 DEAD/DEAH box helicase BER93_00200 PF00271 Helicase conserved C-terminal domain BER93_00215 PF00140 Sigma-70 factor, region 1 BER93_00215 PF04542 Sigma-70 region 2 BER93_00215 PF04545 Sigma-70, region 4 BER93_00220 PF03167 Uracil DNA glycosylase superfamily BER93_00225 PF00072 Response regulator receiver domain BER93_00235 PF00005 ABC transporter BER93_00240 PF00270 DEAD/DEAH box helicase BER93_00240 PF00271 Helicase conserved C-terminal domain BER93_00240 PF12300 BER93_00240 BER93_00245 PF00085 Thioredoxin BER93_00250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_00250 PF07497 Rho termination factor, RNA-binding domain BER93_00250 PF07498 Rho termination factor, N-terminal domain BER93_00260 PF03971 Monomeric isocitrate dehydrogenase BER93_00280 PF01476 LysM domain BER93_00285 PF14489 QueF-like protein BER93_00285 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BER93_00295 PF16576 BER93_00295 BER93_00300 PF00873 AcrB/AcrD/AcrF family BER93_00305 PF00873 AcrB/AcrD/AcrF family BER93_00320 PF07063 Domain of unknown function (DUF1338) BER93_00335 PF04349 Periplasmic glucan biosynthesis protein, MdoG BER93_00340 PF00265 Thymidine kinase BER93_00345 PF00580 UvrD/REP helicase N-terminal domain BER93_00345 PF13361 UvrD-like helicase C-terminal domain BER93_00375 PF04337 Protein of unknown function, DUF480 BER93_00400 PF01553 Acyltransferase BER93_00405 PF00107 Zinc-binding dehydrogenase BER93_00405 PF08240 Alcohol dehydrogenase GroES-like domain BER93_00410 PF04325 Protein of unknown function (DUF465) BER93_00420 PF01609 Transposase DDE domain BER93_00420 PF13340 BER93_00420 BER93_00460 PF01527 Transposase BER93_00465 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_00470 PF13454 FAD-NAD(P)-binding BER93_00475 PF01609 Transposase DDE domain BER93_00475 PF13340 BER93_00475 BER93_00480 PF13340 BER93_00480 BER93_00485 PF06903 BER93_00485 BER93_00490 PF01609 Transposase DDE domain BER93_00495 PF05598 BER93_00495 BER93_00510 PF00270 DEAD/DEAH box helicase BER93_00510 PF00271 Helicase conserved C-terminal domain BER93_00515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER93_00515 PF00364 Biotin-requiring enzyme BER93_00515 PF02817 e3 binding domain BER93_00520 PF07653 Variant SH3 domain BER93_00525 PF02779 Transketolase, pyrimidine binding domain BER93_00525 PF02780 Transketolase, C-terminal domain BER93_00530 PF00676 Dehydrogenase E1 component BER93_00535 PF03301 Tryptophan 2,3-dioxygenase BER93_00540 PF00854 POT family BER93_00545 PF13899 Thioredoxin-like BER93_00555 PF12802 MarR family BER93_00560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BER93_00560 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal BER93_00565 PF04209 homogentisate 1,2-dioxygenase BER93_00590 PF02558 Ketopantoate reductase PanE/ApbA BER93_00590 PF08546 Ketopantoate reductase PanE/ApbA C terminal BER93_00600 PF01061 BER93_00600 BER93_00605 PF00005 ABC transporter BER93_00610 PF00175 Oxidoreductase NAD-binding domain BER93_00610 PF00970 Oxidoreductase FAD-binding domain BER93_00620 PF00561 alpha/beta hydrolase fold BER93_00620 PF08386 TAP-like protein BER93_00625 PF00005 ABC transporter BER93_00630 PF12679 BER93_00630 BER93_00635 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_00650 PF00043 Glutathione S-transferase, C-terminal domain BER93_00650 PF02798 Glutathione S-transferase, N-terminal domain BER93_00655 PF13333 BER93_00655 BER93_00705 PF13503 BER93_00705 BER93_00720 PF13503 BER93_00720 BER93_00730 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_00735 PF13503 BER93_00735 BER93_00740 PF05954 Phage late control gene D protein (GPD) BER93_00740 PF10106 BER93_00740 BER93_00740 PF13296 BER93_00740 BER93_00745 PF13614 AAA domain BER93_00750 PF01555 DNA methylase BER93_00760 PF04860 Phage portal protein BER93_00765 PF03237 Terminase-like family BER93_00765 PF06056 Putative ATPase subunit of terminase (gpP-like) BER93_00765 PF17289 BER93_00765 BER93_00770 PF05929 BER93_00770 BER93_00775 PF05125 BER93_00775 BER93_00780 PF05944 BER93_00780 BER93_00785 PF05926 BER93_00785 BER93_00790 PF05489 Phage Tail Protein X BER93_00795 PF16931 BER93_00795 BER93_00800 PF05449 BER93_00800 BER93_00815 PF06891 BER93_00815 BER93_00820 PF05069 BER93_00820 BER93_00825 PF04865 BER93_00825 BER93_00830 PF09684 BER93_00830 BER93_00845 PF04717 Phage-related baseplate assembly protein BER93_00850 PF04965 Gene 25-like lysozyme BER93_00855 PF04984 Phage tail sheath protein BER93_00855 PF17482 BER93_00855 BER93_00860 PF04985 BER93_00860 BER93_00865 PF10109 BER93_00865 BER93_00870 PF10145 BER93_00870 BER93_00875 PF06995 BER93_00875 BER93_00890 PF01609 Transposase DDE domain BER93_00890 PF05598 BER93_00890 BER93_00895 PF01609 Transposase DDE domain BER93_00895 PF05598 BER93_00895 BER93_00915 PF00140 Sigma-70 factor, region 1 BER93_00915 PF03979 Sigma-70 factor, region 1 BER93_00915 PF04539 Sigma-70 region 3 BER93_00915 PF04542 Sigma-70 region 2 BER93_00915 PF04545 Sigma-70, region 4 BER93_00915 PF04546 Sigma-70, non-essential region BER93_00920 PF02580 D-Tyr-tRNA(Tyr) deacylase BER93_00925 PF03279 BER93_00925 BER93_00930 PF13420 Acetyltransferase (GNAT) domain BER93_00935 PF00925 GTP cyclohydrolase II BER93_00940 PF03703 BER93_00940 BER93_00945 PF03703 BER93_00945 BER93_00950 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BER93_00955 PF00535 Glycosyl transferase family 2 BER93_00960 PF04932 BER93_00960 BER93_00965 PF13231 BER93_00965 BER93_00970 PF01029 NusB family BER93_00970 PF01189 NOL1/NOP2/sun family BER93_00975 PF00551 Formyl transferase BER93_00975 PF02911 Formyl transferase, C-terminal domain BER93_00980 PF01327 Polypeptide deformylase BER93_00985 PF01476 LysM domain BER93_00990 PF02481 DNA recombination-mediator protein A BER93_00995 PF04361 BER93_00995 BER93_01000 PF01609 Transposase DDE domain BER93_01005 PF01609 Transposase DDE domain BER93_01005 PF13340 BER93_01005 BER93_01010 PF01131 DNA topoisomerase BER93_01010 PF01751 Toprim domain BER93_01010 PF13368 BER93_01010 BER93_01015 PF01300 Telomere recombination BER93_01040 PF00593 TonB dependent receptor BER93_01040 PF07715 TonB-dependent Receptor Plug Domain BER93_01045 PF01103 Surface antigen BER93_01045 PF07244 Surface antigen variable number repeat BER93_01045 PF17243 BER93_01045 BER93_01050 PF04357 BER93_01050 BER93_01065 PF13360 PQQ-like domain BER93_01070 PF13671 AAA domain BER93_01075 PF13347 MFS/sugar transport protein BER93_01085 PF00072 Response regulator receiver domain BER93_01085 PF00512 His Kinase A (phospho-acceptor) domain BER93_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_01085 PF12860 BER93_01085 BER93_01090 PF02659 BER93_01090 BER93_01095 PF01614 Bacterial transcriptional regulator BER93_01095 PF09339 IclR helix-turn-helix domain BER93_01100 PF07690 Major Facilitator Superfamily BER93_01105 PF05336 Domain of unknown function (DUF718) BER93_01110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER93_01110 PF13378 Enolase C-terminal domain-like BER93_01115 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER93_01120 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_01125 PF04909 Amidohydrolase BER93_01130 PF00248 Aldo/keto reductase family BER93_01135 PF00072 Response regulator receiver domain BER93_01135 PF00196 Bacterial regulatory proteins, luxR family BER93_01140 PF00501 AMP-binding enzyme BER93_01140 PF13193 AMP-binding enzyme C-terminal domain BER93_01140 PF16177 BER93_01140 BER93_01150 PF04341 BER93_01150 BER93_01155 PF00474 Sodium:solute symporter family BER93_01160 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_01165 PF04828 Glutathione-dependent formaldehyde-activating enzyme BER93_01170 PF04226 BER93_01170 BER93_01175 PF01648 4'-phosphopantetheinyl transferase superfamily BER93_01185 PF02527 rRNA small subunit methyltransferase G BER93_01190 PF00873 AcrB/AcrD/AcrF family BER93_01200 PF00830 Ribosomal L28 family BER93_01205 PF00471 Ribosomal protein L33 BER93_01210 PF13091 PLD-like domain BER93_01210 PF13396 BER93_01210 BER93_01215 PF13454 FAD-NAD(P)-binding BER93_01220 PF00580 UvrD/REP helicase N-terminal domain BER93_01220 PF13361 UvrD-like helicase C-terminal domain BER93_01230 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) BER93_01235 PF01609 Transposase DDE domain BER93_01235 PF05598 BER93_01235 BER93_01250 PF02237 Biotin protein ligase C terminal domain BER93_01250 PF03099 Biotin/lipoate A/B protein ligase family BER93_01250 PF08279 HTH domain BER93_01255 PF03309 Type III pantothenate kinase BER93_01260 PF05036 Sporulation related domain BER93_01275 PF00665 Integrase core domain BER93_01275 PF13276 BER93_01275 BER93_01280 PF01527 Transposase BER93_01300 PF05598 BER93_01300 BER93_01310 PF12697 Alpha/beta hydrolase family BER93_01325 PF00579 tRNA synthetases class I (W and Y) BER93_01330 PF08085 BER93_01330 BER93_01335 PF08085 BER93_01335 BER93_01340 PF00491 Arginase family BER93_01350 PF01609 Transposase DDE domain BER93_01360 PF01609 Transposase DDE domain BER93_01360 PF05598 BER93_01360 BER93_01365 PF02223 Thymidylate kinase BER93_01370 PF01609 Transposase DDE domain BER93_01370 PF05598 BER93_01370 BER93_01375 PF01292 Prokaryotic cytochrome b561 BER93_01380 PF00199 Catalase BER93_01385 PF00883 Cytosol aminopeptidase family, catalytic domain BER93_01390 PF00702 haloacid dehalogenase-like hydrolase BER93_01395 PF01594 BER93_01395 BER93_01415 PF13180 PDZ domain BER93_01415 PF13365 Trypsin-like peptidase domain BER93_01425 PF11769 BER93_01425 BER93_01435 PF00512 His Kinase A (phospho-acceptor) domain BER93_01435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_01440 PF00072 Response regulator receiver domain BER93_01440 PF00486 Transcriptional regulatory protein, C terminal BER93_01455 PF01609 Transposase DDE domain BER93_01455 PF13340 BER93_01455 BER93_01460 PF13586 BER93_01460 BER93_01470 PF01609 Transposase DDE domain BER93_01475 PF01370 NAD dependent epimerase/dehydratase family BER93_01475 PF08338 Domain of unknown function (DUF1731) BER93_01480 PF13628 BER93_01480 BER93_01495 PF01609 Transposase DDE domain BER93_01495 PF13340 BER93_01495 BER93_01515 PF01609 Transposase DDE domain BER93_01530 PF01139 tRNA-splicing ligase RtcB BER93_01535 PF00440 Bacterial regulatory proteins, tetR family BER93_01540 PF00111 2Fe-2S iron-sulfur cluster binding domain BER93_01540 PF00175 Oxidoreductase NAD-binding domain BER93_01540 PF00970 Oxidoreductase FAD-binding domain BER93_01545 PF00487 BER93_01545 BER93_01550 PF00563 EAL domain BER93_01550 PF12792 BER93_01550 BER93_01555 PF08212 Lipocalin-like domain BER93_01565 PF01078 Magnesium chelatase, subunit ChlI BER93_01565 PF13335 BER93_01565 BER93_01565 PF13541 Subunit ChlI of Mg-chelatase BER93_01570 PF04380 BER93_01570 BER93_01575 PF00543 Nitrogen regulatory protein P-II BER93_01580 PF02838 Glycosyl hydrolase family 20, domain 2 BER93_01580 PF07555 beta-N-acetylglucosaminidase BER93_01590 PF14470 Bacterial PH domain BER93_01600 PF01564 Spermine/spermidine synthase BER93_01600 PF17284 BER93_01600 BER93_01605 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER93_01610 PF01609 Transposase DDE domain BER93_01610 PF05598 BER93_01610 BER93_01625 PF11191 Protein of unknown function (DUF2782) BER93_01630 PF00476 DNA polymerase family A BER93_01630 PF01367 5'-3' exonuclease, C-terminal SAM fold BER93_01630 PF01612 3'-5' exonuclease BER93_01630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BER93_01635 PF01218 Coproporphyrinogen III oxidase BER93_01655 PF00326 Prolyl oligopeptidase family BER93_01655 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER93_01660 PF00501 AMP-binding enzyme BER93_01670 PF04820 Tryptophan halogenase BER93_01675 PF00550 Phosphopantetheine attachment site BER93_01685 PF01553 Acyltransferase BER93_01690 PF07977 FabA-like domain BER93_01695 PF03279 BER93_01695 BER93_01705 PF03176 MMPL family BER93_01720 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_01725 PF04820 Tryptophan halogenase BER93_01730 PF00535 Glycosyl transferase family 2 BER93_01735 PF13723 BER93_01735 BER93_01740 PF00109 Beta-ketoacyl synthase, N-terminal domain BER93_01740 PF02801 Beta-ketoacyl synthase, C-terminal domain BER93_01745 PF05166 YcgL domain BER93_01750 PF00023 Ankyrin repeat BER93_01750 PF12796 Ankyrin repeats (3 copies) BER93_01760 PF00723 Glycosyl hydrolases family 15 BER93_01765 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BER93_01765 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BER93_01770 PF02254 TrkA-N domain BER93_01775 PF00194 Eukaryotic-type carbonic anhydrase BER93_01780 PF00571 CBS domain BER93_01780 PF01769 Divalent cation transporter BER93_01780 PF03448 MgtE intracellular N domain BER93_01785 PF13302 Acetyltransferase (GNAT) domain BER93_01785 PF13380 CoA binding domain BER93_01785 PF13549 ATP-grasp domain BER93_01785 PF13607 Succinyl-CoA ligase like flavodoxin domain BER93_01790 PF04332 BER93_01790 BER93_01795 PF00317 Ribonucleotide reductase, all-alpha domain BER93_01795 PF02867 Ribonucleotide reductase, barrel domain BER93_01800 PF00268 Ribonucleotide reductase, small chain BER93_01805 PF00258 Flavodoxin BER93_01810 PF00085 Thioredoxin BER93_01820 PF03006 BER93_01820 BER93_01825 PF00270 DEAD/DEAH box helicase BER93_01825 PF00271 Helicase conserved C-terminal domain BER93_01825 PF09369 BER93_01825 BER93_01830 PF13482 RNase_H superfamily BER93_01835 PF03009 Glycerophosphoryl diester phosphodiesterase family BER93_01840 PF00593 TonB dependent receptor BER93_01840 PF07715 TonB-dependent Receptor Plug Domain BER93_01845 PF08975 Domain of unknown function (DUF1868) BER93_01860 PF00873 AcrB/AcrD/AcrF family BER93_01865 PF00873 AcrB/AcrD/AcrF family BER93_01875 PF00873 AcrB/AcrD/AcrF family BER93_01880 PF13437 HlyD family secretion protein BER93_01885 PF13649 Methyltransferase domain BER93_01895 PF14305 BER93_01895 BER93_01900 PF08845 BER93_01900 BER93_01925 PF00665 Integrase core domain BER93_01935 PF01527 Transposase BER93_01940 PF07055 Enoyl reductase FAD binding domain BER93_01940 PF12241 Trans-2-enoyl-CoA reductase catalytic region BER93_01940 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BER93_01945 PF09912 BER93_01945 BER93_01950 PF03055 Retinal pigment epithelial membrane protein BER93_01960 PF01070 FMN-dependent dehydrogenase BER93_01975 PF00155 Aminotransferase class I and II BER93_01980 PF00316 Fructose-1-6-bisphosphatase BER93_01985 PF13229 Right handed beta helix region BER93_01985 PF16380 BER93_01985 BER93_01990 PF06080 BER93_01990 BER93_01995 PF12787 BER93_01995 BER93_02005 PF10116 BER93_02005 BER93_02010 PF00293 NUDIX domain BER93_02015 PF13460 NADH(P)-binding BER93_02020 PF01447 Thermolysin metallopeptidase, catalytic domain BER93_02020 PF02868 Thermolysin metallopeptidase, alpha-helical domain BER93_02035 PF01609 Transposase DDE domain BER93_02040 PF13340 BER93_02040 BER93_02050 PF00108 Thiolase, N-terminal domain BER93_02050 PF02803 Thiolase, C-terminal domain BER93_02055 PF07219 BER93_02055 BER93_02060 PF04375 BER93_02060 BER93_02065 PF02602 Uroporphyrinogen-III synthase HemD BER93_02070 PF09500 Putative thioesterase (yiiD_Cterm) BER93_02080 PF00581 Rhodanese-like domain BER93_02085 PF02556 Preprotein translocase subunit SecB BER93_02090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BER93_02090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BER93_02100 PF00205 Thiamine pyrophosphate enzyme, central domain BER93_02100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BER93_02100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BER93_02110 PF00588 SpoU rRNA Methylase family BER93_02115 PF13698 BER93_02115 BER93_02120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BER93_02120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_02130 PF01527 Transposase BER93_02135 PF00665 Integrase core domain BER93_02135 PF13276 BER93_02135 BER93_02150 PF00588 SpoU rRNA Methylase family BER93_02150 PF08032 RNA 2'-O ribose methyltransferase substrate binding BER93_02160 PF01474 Class-II DAHP synthetase family BER93_02165 PF00924 Mechanosensitive ion channel BER93_02175 PF09900 BER93_02175 BER93_02180 PF00009 Elongation factor Tu GTP binding domain BER93_02180 PF00679 Elongation factor G C-terminus BER93_02180 PF03144 Elongation factor Tu domain 2 BER93_02185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BER93_02190 PF00056 lactate/malate dehydrogenase, NAD binding domain BER93_02190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BER93_02210 PF07486 Cell Wall Hydrolase BER93_02215 PF01609 Transposase DDE domain BER93_02215 PF05598 BER93_02215 BER93_02225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER93_02225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_02230 PF08240 Alcohol dehydrogenase GroES-like domain BER93_02230 PF13602 Zinc-binding dehydrogenase BER93_02235 PF00691 OmpA family BER93_02235 PF13505 Outer membrane protein beta-barrel domain BER93_02245 PF00849 RNA pseudouridylate synthase BER93_02245 PF01479 S4 domain BER93_02255 PF00155 Aminotransferase class I and II BER93_02260 PF13531 Bacterial extracellular solute-binding protein BER93_02265 PF00528 Binding-protein-dependent transport system inner membrane component BER93_02270 PF00528 Binding-protein-dependent transport system inner membrane component BER93_02275 PF00005 ABC transporter BER93_02275 PF12857 BER93_02275 BER93_02280 PF09694 BER93_02280 BER93_02285 PF00107 Zinc-binding dehydrogenase BER93_02285 PF08240 Alcohol dehydrogenase GroES-like domain BER93_02290 PF00593 TonB dependent receptor BER93_02290 PF07715 TonB-dependent Receptor Plug Domain BER93_02295 PF04185 Phosphoesterase family BER93_02295 PF05506 BER93_02295 BER93_02300 PF00300 Histidine phosphatase superfamily (branch 1) BER93_02305 PF01609 Transposase DDE domain BER93_02305 PF13340 BER93_02305 BER93_02315 PF00816 H-NS histone family BER93_02320 PF00128 Alpha amylase, catalytic domain BER93_02320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_02335 PF08443 RimK-like ATP-grasp domain BER93_02345 PF00072 Response regulator receiver domain BER93_02345 PF00486 Transcriptional regulatory protein, C terminal BER93_02350 PF00512 His Kinase A (phospho-acceptor) domain BER93_02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_02370 PF00677 Lumazine binding domain BER93_02375 PF00925 GTP cyclohydrolase II BER93_02375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BER93_02380 PF00885 6,7-dimethyl-8-ribityllumazine synthase BER93_02385 PF01029 NusB family BER93_02390 PF00586 AIR synthase related protein, N-terminal domain BER93_02390 PF02769 AIR synthase related protein, C-terminal domain BER93_02410 PF13692 Glycosyl transferases group 1 BER93_02425 PF04107 Glutamate-cysteine ligase family 2(GCS2) BER93_02430 PF01926 50S ribosome-binding GTPase BER93_02435 PF00034 Cytochrome c BER93_02440 PF13462 Thioredoxin BER93_02445 PF01323 DSBA-like thioredoxin domain BER93_02450 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_02455 PF00107 Zinc-binding dehydrogenase BER93_02455 PF08240 Alcohol dehydrogenase GroES-like domain BER93_02465 PF01609 Transposase DDE domain BER93_02475 PF05598 BER93_02475 BER93_02480 PF00106 short chain dehydrogenase BER93_02480 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_02490 PF00326 Prolyl oligopeptidase family BER93_02490 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER93_02495 PF07759 BER93_02495 BER93_02500 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BER93_02515 PF00324 Amino acid permease BER93_02525 PF01544 CorA-like Mg2+ transporter protein BER93_02540 PF01987 Mitochondrial biogenesis AIM24 BER93_02545 PF01204 Trehalase BER93_02565 PF00675 Insulinase (Peptidase family M16) BER93_02565 PF05193 Peptidase M16 inactive domain BER93_02570 PF00989 PAS fold BER93_02570 PF00990 GGDEF domain BER93_02570 PF01590 GAF domain BER93_02570 PF08448 PAS fold BER93_02570 PF13426 PAS domain BER93_02585 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_02585 PF00553 Cellulose binding domain BER93_02590 PF00916 BER93_02590 BER93_02590 PF01740 STAS domain BER93_02600 PF13632 Glycosyl transferase family group 2 BER93_02605 PF02230 Phospholipase/Carboxylesterase BER93_02615 PF00072 Response regulator receiver domain BER93_02615 PF04397 LytTr DNA-binding domain BER93_02620 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BER93_02620 PF03900 Porphobilinogen deaminase, C-terminal domain BER93_02625 PF04338 Protein of unknown function, DUF481 BER93_02630 PF08279 HTH domain BER93_02630 PF13280 BER93_02630 BER93_02635 PF08212 Lipocalin-like domain BER93_02645 PF00326 Prolyl oligopeptidase family BER93_02645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BER93_02655 PF00155 Aminotransferase class I and II BER93_02660 PF00326 Prolyl oligopeptidase family BER93_02660 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BER93_02670 PF01678 Diaminopimelate epimerase BER93_02675 PF04340 Protein of unknown function, DUF484 BER93_02680 PF00589 Phage integrase family BER93_02680 PF02899 Phage integrase, N-terminal SAM-like domain BER93_02685 PF00227 Proteasome subunit BER93_02690 PF00004 ATPase family associated with various cellular activities (AAA) BER93_02690 PF07724 AAA domain (Cdc48 subfamily) BER93_02690 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_02700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_02715 PF01209 ubiE/COQ5 methyltransferase family BER93_02720 PF00990 GGDEF domain BER93_02725 PF01433 Peptidase family M1 BER93_02725 PF09127 Leukotriene A4 hydrolase, C-terminal BER93_02735 PF00702 haloacid dehalogenase-like hydrolase BER93_02740 PF00294 pfkB family carbohydrate kinase BER93_02745 PF06723 MreB/Mbl protein BER93_02750 PF04085 rod shape-determining protein MreC BER93_02755 PF04093 BER93_02755 BER93_02760 PF00905 Penicillin binding protein transpeptidase domain BER93_02760 PF03717 Penicillin-binding Protein dimerisation domain BER93_02765 PF01098 BER93_02765 BER93_02770 PF00295 Glycosyl hydrolases family 28 BER93_02775 PF13406 Transglycosylase SLT domain BER93_02780 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel BER93_02780 PF05036 Sporulation related domain BER93_02785 PF00768 D-alanyl-D-alanine carboxypeptidase BER93_02785 PF07943 Penicillin-binding protein 5, C-terminal domain BER93_02790 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) BER93_02795 PF04359 Protein of unknown function (DUF493) BER93_02800 PF03099 Biotin/lipoate A/B protein ligase family BER93_02805 PF04055 Radical SAM superfamily BER93_02805 PF16881 BER93_02805 BER93_02830 PF00595 PDZ domain (Also known as DHR or GLGF) BER93_02830 PF03572 Peptidase family S41 BER93_02830 PF11818 BER93_02830 BER93_02840 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BER93_02860 PF10001 BER93_02860 BER93_02865 PF05433 BER93_02865 BER93_02875 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BER93_02875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BER93_02880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER93_02880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BER93_02885 PF04972 BON domain BER93_02890 PF00512 His Kinase A (phospho-acceptor) domain BER93_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_02890 PF05227 CHASE3 domain BER93_02890 PF13188 PAS domain BER93_02895 PF00072 Response regulator receiver domain BER93_02900 PF00072 Response regulator receiver domain BER93_02900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_02905 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BER93_02910 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_02915 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase BER93_02930 PF01203 BER93_02930 BER93_02935 PF00665 Integrase core domain BER93_02935 PF13276 BER93_02935 BER93_02935 PF13333 BER93_02935 BER93_02940 PF01527 Transposase BER93_02950 PF01527 Transposase BER93_02955 PF00392 Bacterial regulatory proteins, gntR family BER93_02955 PF07702 UTRA domain BER93_02960 PF07690 Major Facilitator Superfamily BER93_02965 PF00356 Bacterial regulatory proteins, lacI family BER93_02965 PF13377 Periplasmic binding protein-like domain BER93_02970 PF01380 SIS domain BER93_02975 PF01979 Amidohydrolase family BER93_02985 PF02583 Metal-sensitive transcriptional repressor BER93_02990 PF00107 Zinc-binding dehydrogenase BER93_02990 PF08240 Alcohol dehydrogenase GroES-like domain BER93_03000 PF00756 Putative esterase BER93_03015 PF01670 Glycosyl hydrolase family 12 BER93_03030 PF06041 Bacterial protein of unknown function (DUF924) BER93_03035 PF05598 BER93_03035 BER93_03045 PF01609 Transposase DDE domain BER93_03045 PF13340 BER93_03045 BER93_03065 PF05598 BER93_03065 BER93_03070 PF01527 Transposase BER93_03080 PF00462 Glutaredoxin BER93_03080 PF00581 Rhodanese-like domain BER93_03085 PF01522 Polysaccharide deacetylase BER93_03090 PF08242 Methyltransferase domain BER93_03100 PF00155 Aminotransferase class I and II BER93_03105 PF00005 ABC transporter BER93_03105 PF00664 ABC transporter transmembrane region BER93_03105 PF03412 Peptidase C39 family BER93_03110 PF13437 HlyD family secretion protein BER93_03110 PF13533 Biotin-lipoyl like BER93_03115 PF01609 Transposase DDE domain BER93_03115 PF13340 BER93_03115 BER93_03120 PF00353 Hemolysin-type calcium-binding repeat (2 copies) BER93_03120 PF06594 BER93_03120 BER93_03125 PF01609 Transposase DDE domain BER93_03125 PF13340 BER93_03125 BER93_03130 PF03193 Protein of unknown function, DUF258 BER93_03135 PF08014 BER93_03135 BER93_03140 PF00128 Alpha amylase, catalytic domain BER93_03145 PF00593 TonB dependent receptor BER93_03145 PF07715 TonB-dependent Receptor Plug Domain BER93_03150 PF07690 Major Facilitator Superfamily BER93_03155 PF00356 Bacterial regulatory proteins, lacI family BER93_03155 PF13377 Periplasmic binding protein-like domain BER93_03160 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_03165 PF03600 Citrate transporter BER93_03170 PF07396 Phosphate-selective porin O and P BER93_03175 PF00072 Response regulator receiver domain BER93_03175 PF00486 Transcriptional regulatory protein, C terminal BER93_03180 PF00512 His Kinase A (phospho-acceptor) domain BER93_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_03180 PF08521 BER93_03180 BER93_03185 PF13531 Bacterial extracellular solute-binding protein BER93_03190 PF00072 Response regulator receiver domain BER93_03190 PF00196 Bacterial regulatory proteins, luxR family BER93_03195 PF07313 Protein of unknown function (DUF1460) BER93_03200 PF01527 Transposase BER93_03215 PF01527 Transposase BER93_03225 PF00072 Response regulator receiver domain BER93_03225 PF00512 His Kinase A (phospho-acceptor) domain BER93_03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_03225 PF02743 Cache domain BER93_03225 PF12860 BER93_03225 BER93_03230 PF07396 Phosphate-selective porin O and P BER93_03235 PF00375 Sodium:dicarboxylate symporter family BER93_03240 PF00390 Malic enzyme, N-terminal domain BER93_03240 PF01515 Phosphate acetyl/butaryl transferase BER93_03240 PF03949 Malic enzyme, NAD binding domain BER93_03250 PF10276 Zinc-finger domain BER93_03255 PF00534 Glycosyl transferases group 1 BER93_03255 PF13439 Glycosyltransferase Family 4 BER93_03260 PF04932 BER93_03260 BER93_03265 PF03279 BER93_03265 BER93_03270 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BER93_03275 PF02321 Outer membrane efflux protein BER93_03280 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BER93_03285 PF00440 Bacterial regulatory proteins, tetR family BER93_03285 PF14246 AefR-like transcriptional repressor, C-terminal region BER93_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_03295 PF00330 Aconitase family (aconitate hydratase) BER93_03300 PF00694 Aconitase C-terminal domain BER93_03305 PF00180 Isocitrate/isopropylmalate dehydrogenase BER93_03310 PF00593 TonB dependent receptor BER93_03310 PF07715 TonB-dependent Receptor Plug Domain BER93_03315 PF01609 Transposase DDE domain BER93_03315 PF05598 BER93_03315 BER93_03320 PF00682 HMGL-like BER93_03320 PF08502 LeuA allosteric (dimerisation) domain BER93_03325 PF00291 Pyridoxal-phosphate dependent enzyme BER93_03330 PF13710 ACT domain BER93_03335 PF00205 Thiamine pyrophosphate enzyme, central domain BER93_03335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BER93_03335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BER93_03340 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BER93_03340 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain BER93_03360 PF01964 ThiC family BER93_03360 PF13667 ThiC-associated domain BER93_03365 PF00486 Transcriptional regulatory protein, C terminal BER93_03370 PF01609 Transposase DDE domain BER93_03370 PF05598 BER93_03370 BER93_03375 PF12833 Helix-turn-helix domain BER93_03380 PF00593 TonB dependent receptor BER93_03380 PF07715 TonB-dependent Receptor Plug Domain BER93_03385 PF08668 HDOD domain BER93_03390 PF00719 Inorganic pyrophosphatase BER93_03420 PF00365 Phosphofructokinase BER93_03425 PF00406 Adenylate kinase BER93_03430 PF01225 Mur ligase family, catalytic domain BER93_03430 PF02875 Mur ligase family, glutamate ligase domain BER93_03430 PF08245 Mur ligase middle domain BER93_03435 PF02190 ATP-dependent protease La (LON) domain BER93_03445 PF01569 PAP2 superfamily BER93_03445 PF09335 BER93_03445 BER93_03445 PF14067 BER93_03445 BER93_03455 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_03460 PF12889 Protein of unknown function (DUF3829) BER93_03465 PF01609 Transposase DDE domain BER93_03465 PF05598 BER93_03465 BER93_03475 PF00202 Aminotransferase class-III BER93_03480 PF00202 Aminotransferase class-III BER93_03485 PF02581 Thiamine monophosphate synthase/TENI BER93_03490 PF00301 Rubredoxin BER93_03495 PF13369 BER93_03495 BER93_03495 PF13371 Tetratricopeptide repeat BER93_03500 PF02643 Uncharacterized ACR, COG1430 BER93_03505 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BER93_03510 PF01878 EVE domain BER93_03515 PF01812 5-formyltetrahydrofolate cyclo-ligase family BER93_03525 PF05164 Cell division protein ZapA BER93_03535 PF03695 Uncharacterised protein family (UPF0149) BER93_03540 PF00557 Metallopeptidase family M24 BER93_03540 PF05195 Aminopeptidase P, N-terminal domain BER93_03545 PF00557 Metallopeptidase family M24 BER93_03560 PF04055 Radical SAM superfamily BER93_03560 PF06969 HemN C-terminal domain BER93_03565 PF01725 Ham1 family BER93_03570 PF01138 3' exoribonuclease family, domain 1 BER93_03570 PF03725 3' exoribonuclease family, domain 2 BER93_03575 PF03755 BER93_03575 BER93_03575 PF08340 BER93_03575 BER93_03580 PF00625 Guanylate kinase BER93_03585 PF01192 RNA polymerase Rpb6 BER93_03590 PF02824 TGS domain BER93_03590 PF04607 Region found in RelA / SpoT proteins BER93_03590 PF13291 ACT domain BER93_03590 PF13328 HD domain BER93_03595 PF01042 Endoribonuclease L-PSP BER93_03600 PF00270 DEAD/DEAH box helicase BER93_03600 PF00271 Helicase conserved C-terminal domain BER93_03600 PF17191 BER93_03600 BER93_03605 PF01609 Transposase DDE domain BER93_03610 PF01156 Inosine-uridine preferring nucleoside hydrolase BER93_03615 PF01197 Ribosomal protein L31 BER93_03620 PF00285 Citrate synthase BER93_03630 PF00905 Penicillin binding protein transpeptidase domain BER93_03630 PF00912 Transglycosylase BER93_03630 PF17092 BER93_03630 BER93_03635 PF11104 Type IV pilus assembly protein PilM; BER93_03640 PF05137 BER93_03640 BER93_03645 PF04350 Pilus assembly protein, PilO BER93_03650 PF04351 Pilus assembly protein, PilP BER93_03655 PF00263 BER93_03655 BER93_03655 PF03958 Bacterial type II/III secretion system short domain BER93_03655 PF07660 Secretin and TonB N terminus short domain BER93_03660 PF01609 Transposase DDE domain BER93_03660 PF05598 BER93_03660 BER93_03665 PF01609 Transposase DDE domain BER93_03665 PF13340 BER93_03665 BER93_03670 PF01609 Transposase DDE domain BER93_03670 PF13340 BER93_03670 BER93_03690 PF01609 Transposase DDE domain BER93_03695 PF02021 Uncharacterised protein family UPF0102 BER93_03700 PF04348 LppC putative lipoprotein BER93_03705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER93_03720 PF01845 CcdB protein BER93_03725 PF07362 Post-segregation antitoxin CcdA BER93_03730 PF05742 BER93_03730 BER93_03735 PF02381 MraZ protein BER93_03740 PF01795 MraW methylase family BER93_03745 PF04999 BER93_03745 BER93_03750 PF00905 Penicillin binding protein transpeptidase domain BER93_03750 PF03717 Penicillin-binding Protein dimerisation domain BER93_03755 PF01225 Mur ligase family, catalytic domain BER93_03755 PF02875 Mur ligase family, glutamate ligase domain BER93_03755 PF08245 Mur ligase middle domain BER93_03760 PF01225 Mur ligase family, catalytic domain BER93_03760 PF02875 Mur ligase family, glutamate ligase domain BER93_03760 PF08245 Mur ligase middle domain BER93_03765 PF00953 Glycosyl transferase family 4 BER93_03770 PF01098 BER93_03770 BER93_03775 PF03033 Glycosyltransferase family 28 N-terminal domain BER93_03775 PF04101 Glycosyltransferase family 28 C-terminal domain BER93_03780 PF01225 Mur ligase family, catalytic domain BER93_03780 PF02875 Mur ligase family, glutamate ligase domain BER93_03780 PF08245 Mur ligase middle domain BER93_03785 PF01820 D-ala D-ala ligase N-terminus BER93_03785 PF07478 D-ala D-ala ligase C-terminus BER93_03790 PF03799 Cell division protein FtsQ BER93_03790 PF08478 POTRA domain, FtsQ-type BER93_03795 PF02491 SHS2 domain inserted in FTSA BER93_03795 PF14450 Cell division protein FtsA BER93_03800 PF00091 Tubulin/FtsZ family, GTPase domain BER93_03800 PF12327 FtsZ family, C-terminal domain BER93_03805 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BER93_03810 PF05258 BER93_03810 BER93_03815 PF01551 Peptidase family M23 BER93_03820 PF01043 SecA preprotein cross-linking domain BER93_03820 PF02810 SEC-C motif BER93_03820 PF07516 SecA Wing and Scaffold domain BER93_03820 PF07517 SecA DEAD-like domain BER93_03830 PF00293 NUDIX domain BER93_03830 PF02581 Thiamine monophosphate synthase/TENI BER93_03840 PF02219 Methylenetetrahydrofolate reductase BER93_03850 PF08240 Alcohol dehydrogenase GroES-like domain BER93_03850 PF13602 Zinc-binding dehydrogenase BER93_03860 PF02902 Ulp1 protease family, C-terminal catalytic domain BER93_03865 PF01609 Transposase DDE domain BER93_03865 PF13340 BER93_03865 BER93_03870 PF01609 Transposase DDE domain BER93_03870 PF05598 BER93_03870 BER93_03875 PF01527 Transposase BER93_03885 PF01121 Dephospho-CoA kinase BER93_03890 PF01478 Type IV leader peptidase family BER93_03890 PF06750 BER93_03890 BER93_03895 PF00482 Type II secretion system (T2SS), protein F BER93_03900 PF00114 Pilin (bacterial filament) BER93_03900 PF07963 Prokaryotic N-terminal methylation motif BER93_03905 PF00437 Type II/IV secretion system protein BER93_03905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER93_03920 PF02661 Fic/DOC family BER93_03925 PF00072 Response regulator receiver domain BER93_03925 PF00158 Sigma-54 interaction domain BER93_03925 PF02954 Bacterial regulatory protein, Fis family BER93_03930 PF00512 His Kinase A (phospho-acceptor) domain BER93_03930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_03935 PF00549 CoA-ligase BER93_03935 PF08442 ATP-grasp domain BER93_03940 PF00549 CoA-ligase BER93_03940 PF02629 CoA binding domain BER93_03945 PF00795 Carbon-nitrogen hydrolase BER93_03945 PF02540 NAD synthase BER93_03950 PF13525 Outer membrane lipoprotein BER93_03955 PF00849 RNA pseudouridylate synthase BER93_03960 PF02578 Multi-copper polyphenol oxidoreductase laccase BER93_03985 PF00982 Glycosyltransferase family 20 BER93_03990 PF00723 Glycosyl hydrolases family 15 BER93_03995 PF02358 Trehalose-phosphatase BER93_04000 PF00593 TonB dependent receptor BER93_04000 PF07715 TonB-dependent Receptor Plug Domain BER93_04005 PF12098 BER93_04005 BER93_04010 PF14486 Domain of unknown function (DUF4432) BER93_04025 PF14497 Glutathione S-transferase, C-terminal domain BER93_04030 PF01541 GIY-YIG catalytic domain BER93_04040 PF01527 Transposase BER93_04055 PF06508 Queuosine biosynthesis protein QueC BER93_04070 PF01479 S4 domain BER93_04075 PF00072 Response regulator receiver domain BER93_04085 PF00270 DEAD/DEAH box helicase BER93_04085 PF00271 Helicase conserved C-terminal domain BER93_04085 PF00570 HRDC domain BER93_04085 PF09382 RQC domain BER93_04085 PF16124 BER93_04085 BER93_04090 PF00210 Ferritin-like domain BER93_04095 PF00270 DEAD/DEAH box helicase BER93_04095 PF00271 Helicase conserved C-terminal domain BER93_04095 PF04408 Helicase associated domain (HA2) BER93_04095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BER93_04095 PF11898 BER93_04095 BER93_04100 PF04055 Radical SAM superfamily BER93_04100 PF13186 Iron-sulfur cluster-binding domain BER93_04100 PF13353 4Fe-4S single cluster domain BER93_04105 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BER93_04110 PF03070 TENA/THI-4/PQQC family BER93_04115 PF12706 Beta-lactamase superfamily domain BER93_04120 PF02824 TGS domain BER93_04120 PF04607 Region found in RelA / SpoT proteins BER93_04120 PF13291 ACT domain BER93_04120 PF13328 HD domain BER93_04130 PF00535 Glycosyl transferase family 2 BER93_04130 PF13692 Glycosyl transferases group 1 BER93_04135 PF00905 Penicillin binding protein transpeptidase domain BER93_04135 PF00912 Transglycosylase BER93_04135 PF14814 Bifunctional transglycosylase second domain BER93_04145 PF13307 Helicase C-terminal domain BER93_04150 PF00814 Glycoprotease family BER93_04155 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_04160 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BER93_04160 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BER93_04165 PF00072 Response regulator receiver domain BER93_04170 PF00072 Response regulator receiver domain BER93_04175 PF01584 CheW-like domain BER93_04180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_04185 PF00072 Response regulator receiver domain BER93_04185 PF01584 CheW-like domain BER93_04185 PF01627 Hpt domain BER93_04185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_04185 PF02895 Signal transducing histidine kinase, homodimeric domain BER93_04190 PF01339 CheB methylesterase BER93_04200 PF13302 Acetyltransferase (GNAT) domain BER93_04215 PF03932 CutC family BER93_04220 PF00560 Leucine Rich Repeat BER93_04235 PF00754 F5/8 type C domain BER93_04235 PF01120 Alpha-L-fucosidase BER93_04240 PF13936 Helix-turn-helix domain BER93_04245 PF05954 Phage late control gene D protein (GPD) BER93_04255 PF09937 BER93_04255 BER93_04260 PF01609 Transposase DDE domain BER93_04265 PF09937 BER93_04265 BER93_04270 PF13665 BER93_04270 BER93_04270 PF14414 BER93_04270 BER93_04275 PF14568 SMI1-KNR4 cell-wall BER93_04280 PF01527 Transposase BER93_04285 PF00665 Integrase core domain BER93_04290 PF00133 tRNA synthetases class I (I, L, M and V) BER93_04290 PF08264 Anticodon-binding domain of tRNA BER93_04290 PF10458 Valyl tRNA synthetase tRNA binding arm BER93_04295 PF04364 DNA polymerase III chi subunit, HolC BER93_04300 PF00883 Cytosol aminopeptidase family, catalytic domain BER93_04300 PF02789 Cytosol aminopeptidase family, N-terminal domain BER93_04305 PF03739 BER93_04305 BER93_04310 PF03739 BER93_04310 BER93_04320 PF06271 BER93_04320 BER93_04325 PF00589 Phage integrase family BER93_04325 PF02899 Phage integrase, N-terminal SAM-like domain BER93_04330 PF10411 Disulfide bond isomerase protein N-terminus BER93_04330 PF13098 Thioredoxin-like domain BER93_04335 PF02769 AIR synthase related protein, C-terminal domain BER93_04335 PF13507 CobB/CobQ-like glutamine amidotransferase domain BER93_04345 PF03895 YadA-like C-terminal region BER93_04345 PF05658 Head domain of trimeric autotransporter adhesin BER93_04345 PF05662 Coiled stalk of trimeric autotransporter adhesin BER93_04350 PF00082 Subtilase family BER93_04350 PF04151 Bacterial pre-peptidase C-terminal domain BER93_04355 PF00437 Type II/IV secretion system protein BER93_04355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER93_04360 PF00482 Type II secretion system (T2SS), protein F BER93_04365 PF08334 Type II secretion system (T2SS), protein G BER93_04370 PF12019 Type II transport protein GspH BER93_04375 PF07963 Prokaryotic N-terminal methylation motif BER93_04385 PF03934 Type II secretion system (T2SS), protein K BER93_04390 PF05137 BER93_04390 BER93_04395 PF10741 BER93_04395 BER93_04405 PF00263 BER93_04405 BER93_04405 PF03958 Bacterial type II/III secretion system short domain BER93_04410 PF00535 Glycosyl transferase family 2 BER93_04415 PF00392 Bacterial regulatory proteins, gntR family BER93_04415 PF07702 UTRA domain BER93_04420 PF04973 BER93_04420 BER93_04425 PF00593 TonB dependent receptor BER93_04425 PF07715 TonB-dependent Receptor Plug Domain BER93_04430 PF01636 Phosphotransferase enzyme family BER93_04435 PF00535 Glycosyl transferase family 2 BER93_04440 PF13586 BER93_04440 BER93_04450 PF02225 PA domain BER93_04465 PF01327 Polypeptide deformylase BER93_04470 PF00005 ABC transporter BER93_04470 PF12848 ABC transporter BER93_04475 PF11776 Domain of unknown function (DUF3315) BER93_04480 PF00464 Serine hydroxymethyltransferase BER93_04485 PF03477 ATP cone domain BER93_04490 PF00583 Acetyltransferase (GNAT) family BER93_04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_04495 PF01872 RibD C-terminal domain BER93_04500 PF01609 Transposase DDE domain BER93_04505 PF01609 Transposase DDE domain BER93_04505 PF05598 BER93_04505 BER93_04515 PF01609 Transposase DDE domain BER93_04515 PF05598 BER93_04515 BER93_04520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER93_04530 PF09831 BER93_04530 BER93_04535 PF11539 Protein of unknown function (DUF3228) BER93_04540 PF13505 Outer membrane protein beta-barrel domain BER93_04555 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BER93_04555 PF05221 S-adenosyl-L-homocysteine hydrolase BER93_04565 PF00311 Phosphoenolpyruvate carboxylase BER93_04570 PF00440 Bacterial regulatory proteins, tetR family BER93_04575 PF13387 BER93_04575 BER93_04585 PF00438 S-adenosylmethionine synthetase, N-terminal domain BER93_04585 PF02772 S-adenosylmethionine synthetase, central domain BER93_04585 PF02773 S-adenosylmethionine synthetase, C-terminal domain BER93_04590 PF04307 BER93_04590 BER93_04595 PF08241 Methyltransferase domain BER93_04600 PF01207 Dihydrouridine synthase (Dus) BER93_04610 PF04011 LemA family BER93_04615 PF01219 Prokaryotic diacylglycerol kinase BER93_04625 PF00512 His Kinase A (phospho-acceptor) domain BER93_04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_04630 PF00072 Response regulator receiver domain BER93_04630 PF00486 Transcriptional regulatory protein, C terminal BER93_04635 PF13472 GDSL-like Lipase/Acylhydrolase family BER93_04640 PF00005 ABC transporter BER93_04645 PF02687 BER93_04645 BER93_04665 PF04342 BER93_04665 BER93_04675 PF10636 Hemin uptake protein hemP BER93_04680 PF00248 Aldo/keto reductase family BER93_04685 PF01773 Na+ dependent nucleoside transporter N-terminus BER93_04685 PF07662 Na+ dependent nucleoside transporter C-terminus BER93_04685 PF07670 Nucleoside recognition BER93_04690 PF00294 pfkB family carbohydrate kinase BER93_04695 PF04536 TLP18 BER93_04700 PF04536 TLP18 BER93_04705 PF01790 BER93_04705 BER93_04710 PF00303 Thymidylate synthase BER93_04720 PF00186 Dihydrofolate reductase BER93_04725 PF00149 Calcineurin-like phosphoesterase BER93_04730 PF04379 Protein of unknown function (DUF525) BER93_04735 PF00398 Ribosomal RNA adenine dimethylase BER93_04740 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BER93_04745 PF00639 PPIC-type PPIASE domain BER93_04745 PF09312 SurA N-terminal domain BER93_04745 PF13616 PPIC-type PPIASE domain BER93_04750 PF03968 OstA-like protein BER93_04750 PF04453 Organic solvent tolerance protein BER93_04755 PF00850 Histone deacetylase domain BER93_04760 PF01923 Cobalamin adenosyltransferase BER93_04770 PF01494 FAD binding domain BER93_04775 PF01494 FAD binding domain BER93_04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_04790 PF03466 LysR substrate binding domain BER93_04810 PF08450 SMP-30/Gluconolaconase/LRE-like region BER93_04815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BER93_04820 PF01728 FtsJ-like methyltransferase BER93_04825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_04835 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER93_04835 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BER93_04840 PF13409 Glutathione S-transferase, N-terminal domain BER93_04845 PF09413 Domain of unknown function (DUF2007) BER93_04850 PF00512 His Kinase A (phospho-acceptor) domain BER93_04855 PF00196 Bacterial regulatory proteins, luxR family BER93_04860 PF01625 Peptide methionine sulfoxide reductase BER93_04865 PF00923 Transaldolase BER93_04870 PF01272 Transcription elongation factor, GreA/GreB, C-term BER93_04870 PF14760 Rnk N-terminus BER93_04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_04875 PF03466 LysR substrate binding domain BER93_04880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_04880 PF13192 Thioredoxin domain BER93_04885 PF00578 AhpC/TSA family BER93_04885 PF10417 C-terminal domain of 1-Cys peroxiredoxin BER93_04890 PF05175 Methyltransferase small domain BER93_04895 PF00561 alpha/beta hydrolase fold BER93_04905 PF05013 N-formylglutamate amidohydrolase BER93_04910 PF00293 NUDIX domain BER93_04915 PF01367 5'-3' exonuclease, C-terminal SAM fold BER93_04915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BER93_04920 PF00881 Nitroreductase family BER93_04925 PF07793 BER93_04925 BER93_04930 PF11304 BER93_04930 BER93_04940 PF04542 Sigma-70 region 2 BER93_04940 PF08281 Sigma-70, region 4 BER93_04950 PF01883 Domain of unknown function DUF59 BER93_04955 PF01063 Aminotransferase class IV BER93_04960 PF01609 Transposase DDE domain BER93_04970 PF00082 Subtilase family BER93_04970 PF04151 Bacterial pre-peptidase C-terminal domain BER93_04975 PF04073 Aminoacyl-tRNA editing domain BER93_04980 PF00710 Asparaginase BER93_04985 PF09842 BER93_04985 BER93_04990 PF03358 NADPH-dependent FMN reductase BER93_04995 PF03631 BER93_04995 BER93_05000 PF00578 AhpC/TSA family BER93_05010 PF03976 Polyphosphate kinase 2 (PPK2) BER93_05015 PF00994 Probable molybdopterin binding domain BER93_05020 PF13844 Glycosyl transferase family 41 BER93_05025 PF00472 RF-1 domain BER93_05025 PF03462 PCRF domain BER93_05030 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BER93_05030 PF01488 Shikimate / quinate 5-dehydrogenase BER93_05030 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BER93_05035 PF13432 Tetratricopeptide repeat BER93_05035 PF14559 Tetratricopeptide repeat BER93_05040 PF03550 Outer membrane lipoprotein LolB BER93_05045 PF00288 GHMP kinases N terminal domain BER93_05045 PF08544 GHMP kinases C terminal BER93_05055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BER93_05055 PF14572 Phosphoribosyl synthetase-associated domain BER93_05060 PF01386 Ribosomal L25p family BER93_05060 PF14693 Ribosomal protein TL5, C-terminal domain BER93_05065 PF01195 Peptidyl-tRNA hydrolase BER93_05070 PF01926 50S ribosome-binding GTPase BER93_05070 PF06071 Protein of unknown function (DUF933) BER93_05090 PF00009 Elongation factor Tu GTP binding domain BER93_05090 PF03143 Elongation factor Tu C-terminal domain BER93_05090 PF03144 Elongation factor Tu domain 2 BER93_05100 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BER93_05105 PF00467 KOW motif BER93_05105 PF02357 Transcription termination factor nusG BER93_05110 PF00298 Ribosomal protein L11, RNA binding domain BER93_05110 PF03946 Ribosomal protein L11, N-terminal domain BER93_05115 PF00687 Ribosomal protein L1p/L10e family BER93_05120 PF00466 Ribosomal protein L10 BER93_05125 PF00542 Ribosomal protein L7/L12 C-terminal domain BER93_05125 PF16320 BER93_05125 BER93_05130 PF00562 RNA polymerase Rpb2, domain 6 BER93_05130 PF04560 RNA polymerase Rpb2, domain 7 BER93_05130 PF04561 RNA polymerase Rpb2, domain 2 BER93_05130 PF04563 RNA polymerase beta subunit BER93_05130 PF04565 RNA polymerase Rpb2, domain 3 BER93_05130 PF10385 RNA polymerase beta subunit external 1 domain BER93_05135 PF00623 RNA polymerase Rpb1, domain 2 BER93_05135 PF04983 RNA polymerase Rpb1, domain 3 BER93_05135 PF04997 RNA polymerase Rpb1, domain 1 BER93_05135 PF04998 RNA polymerase Rpb1, domain 5 BER93_05135 PF05000 RNA polymerase Rpb1, domain 4 BER93_05140 PF00164 Ribosomal protein S12/S23 BER93_05145 PF00177 Ribosomal protein S7p/S5e BER93_05150 PF00009 Elongation factor Tu GTP binding domain BER93_05150 PF00679 Elongation factor G C-terminus BER93_05150 PF03144 Elongation factor Tu domain 2 BER93_05150 PF03764 Elongation factor G, domain IV BER93_05150 PF14492 Elongation Factor G, domain II BER93_05155 PF00009 Elongation factor Tu GTP binding domain BER93_05155 PF03143 Elongation factor Tu C-terminal domain BER93_05155 PF03144 Elongation factor Tu domain 2 BER93_05160 PF00338 Ribosomal protein S10p/S20e BER93_05165 PF00297 Ribosomal protein L3 BER93_05170 PF00573 Ribosomal protein L4/L1 family BER93_05175 PF00276 Ribosomal protein L23 BER93_05180 PF00181 Ribosomal Proteins L2, RNA binding domain BER93_05180 PF03947 Ribosomal Proteins L2, C-terminal domain BER93_05185 PF00203 Ribosomal protein S19 BER93_05190 PF00237 Ribosomal protein L22p/L17e BER93_05195 PF00189 Ribosomal protein S3, C-terminal domain BER93_05195 PF07650 KH domain BER93_05200 PF00252 Ribosomal protein L16p/L10e BER93_05205 PF00831 Ribosomal L29 protein BER93_05210 PF00366 Ribosomal protein S17 BER93_05215 PF00238 Ribosomal protein L14p/L23e BER93_05220 PF00467 KOW motif BER93_05220 PF17136 BER93_05220 BER93_05225 PF00281 Ribosomal protein L5 BER93_05225 PF00673 ribosomal L5P family C-terminus BER93_05230 PF00253 Ribosomal protein S14p/S29e BER93_05235 PF00410 Ribosomal protein S8 BER93_05240 PF00347 Ribosomal protein L6 BER93_05245 PF00861 Ribosomal L18p/L5e family BER93_05250 PF00333 Ribosomal protein S5, N-terminal domain BER93_05250 PF03719 Ribosomal protein S5, C-terminal domain BER93_05255 PF00327 Ribosomal protein L30p/L7e BER93_05260 PF00828 Ribosomal protein L18e/L15 BER93_05265 PF00344 SecY translocase BER93_05270 PF00416 Ribosomal protein S13/S18 BER93_05275 PF00411 Ribosomal protein S11 BER93_05280 PF00163 Ribosomal protein S4/S9 N-terminal domain BER93_05280 PF01479 S4 domain BER93_05285 PF01000 RNA polymerase Rpb3/RpoA insert domain BER93_05285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BER93_05285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BER93_05290 PF01196 Ribosomal protein L17 BER93_05295 PF02600 Disulfide bond formation protein DsbB BER93_05315 PF00135 Carboxylesterase family BER93_05325 PF00135 Carboxylesterase family BER93_05330 PF03080 BER93_05330 BER93_05340 PF01741 Large-conductance mechanosensitive channel, MscL BER93_05345 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER93_05355 PF02080 TrkA-C domain BER93_05355 PF03600 Citrate transporter BER93_05360 PF02390 Putative methyltransferase BER93_05365 PF05690 Thiazole biosynthesis protein ThiG BER93_05370 PF02597 ThiS family BER93_05375 PF00657 GDSL-like Lipase/Acylhydrolase BER93_05375 PF03797 Autotransporter beta-domain BER93_05385 PF00589 Phage integrase family BER93_05385 PF13356 Domain of unknown function (DUF4102) BER93_05395 PF01609 Transposase DDE domain BER93_05395 PF13340 BER93_05395 BER93_05410 PF13560 Helix-turn-helix domain BER93_05420 PF01609 Transposase DDE domain BER93_05420 PF13340 BER93_05420 BER93_05430 PF00665 Integrase core domain BER93_05430 PF13276 BER93_05430 BER93_05435 PF01527 Transposase BER93_05445 PF00990 GGDEF domain BER93_05455 PF08843 Nucleotidyl transferase of unknown function (DUF1814) BER93_05460 PF11459 BER93_05460 BER93_05460 PF17194 BER93_05460 BER93_05465 PF12553 BER93_05465 BER93_05475 PF01609 Transposase DDE domain BER93_05485 PF13271 BER93_05485 BER93_05515 PF13560 Helix-turn-helix domain BER93_05520 PF02534 Type IV secretory system Conjugative DNA transfer BER93_05535 PF01471 Putative peptidoglycan binding domain BER93_05545 PF00005 ABC transporter BER93_05545 PF00664 ABC transporter transmembrane region BER93_05545 PF03412 Peptidase C39 family BER93_05555 PF01609 Transposase DDE domain BER93_05555 PF13340 BER93_05555 BER93_05585 PF01527 Transposase BER93_05605 PF01156 Inosine-uridine preferring nucleoside hydrolase BER93_05615 PF00440 Bacterial regulatory proteins, tetR family BER93_05620 PF00300 Histidine phosphatase superfamily (branch 1) BER93_05625 PF01256 Carbohydrate kinase BER93_05635 PF01609 Transposase DDE domain BER93_05635 PF13340 BER93_05635 BER93_05645 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_05655 PF00027 Cyclic nucleotide-binding domain BER93_05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_05660 PF00563 EAL domain BER93_05665 PF13328 HD domain BER93_05675 PF04452 RNA methyltransferase BER93_05680 PF00202 Aminotransferase class-III BER93_05685 PF00293 NUDIX domain BER93_05690 PF00459 Inositol monophosphatase family BER93_05695 PF03819 MazG nucleotide pyrophosphohydrolase domain BER93_05700 PF01571 Aminomethyltransferase folate-binding domain BER93_05700 PF08669 Glycine cleavage T-protein C-terminal barrel domain BER93_05705 PF01597 Glycine cleavage H-protein BER93_05715 PF00144 Beta-lactamase BER93_05725 PF06993 BER93_05725 BER93_05730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_05730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_05730 PF09317 BER93_05730 BER93_05740 PF00440 Bacterial regulatory proteins, tetR family BER93_05755 PF01609 Transposase DDE domain BER93_05755 PF05598 BER93_05755 BER93_05760 PF13419 Haloacid dehalogenase-like hydrolase BER93_05765 PF01609 Transposase DDE domain BER93_05775 PF01527 Transposase BER93_05785 PF01430 Hsp33 protein BER93_05790 PF00912 Transglycosylase BER93_05795 PF00535 Glycosyl transferase family 2 BER93_05800 PF00571 CBS domain BER93_05805 PF05170 BER93_05805 BER93_05810 PF03006 BER93_05810 BER93_05815 PF00009 Elongation factor Tu GTP binding domain BER93_05815 PF16658 BER93_05815 BER93_05830 PF00561 alpha/beta hydrolase fold BER93_05835 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_05840 PF00742 Homoserine dehydrogenase BER93_05840 PF03447 Homoserine dehydrogenase, NAD binding domain BER93_05845 PF00561 alpha/beta hydrolase fold BER93_05855 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_05865 PF05768 Glutaredoxin-like domain (DUF836) BER93_05870 PF04264 YceI-like domain BER93_05875 PF01292 Prokaryotic cytochrome b561 BER93_05880 PF04264 YceI-like domain BER93_05885 PF00072 Response regulator receiver domain BER93_05885 PF00512 His Kinase A (phospho-acceptor) domain BER93_05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_05885 PF07494 Two component regulator propeller BER93_05885 PF07495 Y_Y_Y domain BER93_05900 PF01263 Aldose 1-epimerase BER93_05905 PF01578 BER93_05905 BER93_05910 PF00448 SRP54-type protein, GTPase domain BER93_05910 PF02881 SRP54-type protein, helical bundle domain BER93_05910 PF02978 Signal peptide binding domain BER93_05920 PF03060 Nitronate monooxygenase BER93_05925 PF01063 Aminotransferase class IV BER93_05930 PF00886 Ribosomal protein S16 BER93_05935 PF01782 RimM N-terminal domain BER93_05935 PF05239 PRC-barrel domain BER93_05940 PF01746 tRNA (Guanine-1)-methyltransferase BER93_05945 PF01245 Ribosomal protein L19 BER93_05950 PF01554 MatE BER93_05955 PF01479 S4 domain BER93_05960 PF05598 BER93_05960 BER93_05985 PF00990 GGDEF domain BER93_06000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER93_06000 PF02824 TGS domain BER93_06000 PF03129 Anticodon binding domain BER93_06000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BER93_06005 PF00707 Translation initiation factor IF-3, C-terminal domain BER93_06005 PF05198 Translation initiation factor IF-3, N-terminal domain BER93_06010 PF01632 Ribosomal protein L35 BER93_06015 PF00453 Ribosomal protein L20 BER93_06020 PF01409 tRNA synthetases class II core domain (F) BER93_06020 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BER93_06025 PF01588 Putative tRNA binding domain BER93_06025 PF03147 Ferredoxin-fold anticodon binding domain BER93_06025 PF03483 B3/4 domain BER93_06025 PF03484 tRNA synthetase B5 domain BER93_06030 PF00216 Bacterial DNA-binding protein BER93_06035 PF13411 MerR HTH family regulatory protein BER93_06045 PF02563 Polysaccharide biosynthesis/export protein BER93_06045 PF10531 SLBB domain BER93_06050 PF02706 Chain length determinant protein BER93_06050 PF13807 BER93_06050 BER93_06055 PF02397 BER93_06055 BER93_06055 PF13727 CoA-binding domain BER93_06065 PF01757 BER93_06065 BER93_06070 PF01757 BER93_06070 BER93_06075 PF00534 Glycosyl transferases group 1 BER93_06075 PF13439 Glycosyltransferase Family 4 BER93_06080 PF13692 Glycosyl transferases group 1 BER93_06085 PF13440 BER93_06085 BER93_06095 PF04230 BER93_06095 BER93_06100 PF03808 BER93_06100 BER93_06110 PF02779 Transketolase, pyrimidine binding domain BER93_06110 PF02780 Transketolase, C-terminal domain BER93_06110 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BER93_06120 PF14279 BER93_06120 BER93_06125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_06125 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_06125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_06125 PF12418 BER93_06125 BER93_06125 PF12806 BER93_06125 BER93_06130 PF03168 Late embryogenesis abundant protein BER93_06135 PF08212 Lipocalin-like domain BER93_06160 PF10685 BER93_06160 BER93_06170 PF10294 Putative methyltransferase BER93_06190 PF04362 Bacterial Fe(2+) trafficking BER93_06195 PF00633 Helix-hairpin-helix motif BER93_06195 PF00730 HhH-GPD superfamily base excision DNA repair protein BER93_06195 PF14815 NUDIX domain BER93_06200 PF00448 SRP54-type protein, GTPase domain BER93_06200 PF02881 SRP54-type protein, helical bundle domain BER93_06205 PF08448 PAS fold BER93_06205 PF12833 Helix-turn-helix domain BER93_06210 PF05544 Proline racemase BER93_06215 PF01266 FAD dependent oxidoreductase BER93_06220 PF13510 2Fe-2S iron-sulfur cluster binding domain BER93_06225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_06230 PF00701 Dihydrodipicolinate synthetase family BER93_06235 PF00171 Aldehyde dehydrogenase family BER93_06240 PF00557 Metallopeptidase family M24 BER93_06240 PF01321 Creatinase/Prolidase N-terminal domain BER93_06245 PF05960 Bacterial protein of unknown function (DUF885) BER93_06250 PF05960 Bacterial protein of unknown function (DUF885) BER93_06255 PF13520 Amino acid permease BER93_06260 PF00326 Prolyl oligopeptidase family BER93_06260 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BER93_06280 PF01609 Transposase DDE domain BER93_06280 PF05598 BER93_06280 BER93_06290 PF00082 Subtilase family BER93_06290 PF09286 Pro-kumamolisin, activation domain BER93_06300 PF00593 TonB dependent receptor BER93_06300 PF07715 TonB-dependent Receptor Plug Domain BER93_06315 PF00326 Prolyl oligopeptidase family BER93_06320 PF00593 TonB dependent receptor BER93_06320 PF07715 TonB-dependent Receptor Plug Domain BER93_06345 PF01527 Transposase BER93_06350 PF01609 Transposase DDE domain BER93_06350 PF05598 BER93_06350 BER93_06355 PF13489 Methyltransferase domain BER93_06360 PF03653 BER93_06360 BER93_06365 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BER93_06370 PF01336 OB-fold nucleic acid binding domain BER93_06370 PF02811 PHP domain BER93_06370 PF07733 Bacterial DNA polymerase III alpha subunit BER93_06370 PF14579 Helix-hairpin-helix motif BER93_06375 PF01351 Ribonuclease HII BER93_06380 PF02684 BER93_06380 BER93_06385 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_06385 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BER93_06390 PF07977 FabA-like domain BER93_06395 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_06395 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BER93_06405 PF01103 Surface antigen BER93_06405 PF07244 Surface antigen variable number repeat BER93_06410 PF02163 Peptidase family M50 BER93_06415 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BER93_06415 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal BER93_06415 PF13288 DXP reductoisomerase C-terminal domain BER93_06420 PF01148 Cytidylyltransferase family BER93_06425 PF01255 Putative undecaprenyl diphosphate synthase BER93_06430 PF01765 Ribosome recycling factor BER93_06435 PF00696 Amino acid kinase family BER93_06445 PF00889 Elongation factor TS BER93_06450 PF00318 Ribosomal protein S2 BER93_06455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BER93_06465 PF05229 BER93_06465 BER93_06470 PF00577 Outer membrane usher protein BER93_06470 PF13953 PapC C-terminal domain BER93_06475 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BER93_06480 PF05229 BER93_06480 BER93_06485 PF00557 Metallopeptidase family M24 BER93_06490 PF01966 HD domain BER93_06490 PF08335 GlnD PII-uridylyltransferase BER93_06495 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_06495 PF14602 Hexapeptide repeat of succinyl-transferase BER93_06495 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BER93_06500 PF03960 ArsC family BER93_06505 PF01546 Peptidase family M20/M25/M40 BER93_06505 PF07687 Peptidase dimerisation domain BER93_06510 PF00733 Asparagine synthase BER93_06510 PF13537 Glutamine amidotransferase domain BER93_06515 PF13229 Right handed beta helix region BER93_06520 PF00593 TonB dependent receptor BER93_06520 PF07715 TonB-dependent Receptor Plug Domain BER93_06525 PF01804 Penicillin amidase BER93_06530 PF01609 Transposase DDE domain BER93_06535 PF00210 Ferritin-like domain BER93_06545 PF00521 DNA gyrase/topoisomerase IV, subunit A BER93_06545 PF03989 DNA gyrase C-terminal domain, beta-propeller BER93_06550 PF01047 MarR family BER93_06555 PF02321 Outer membrane efflux protein BER93_06560 PF13533 Biotin-lipoyl like BER93_06560 PF16576 BER93_06560 BER93_06565 PF07690 Major Facilitator Superfamily BER93_06580 PF00854 POT family BER93_06585 PF01694 Rhomboid family BER93_06595 PF14542 GCN5-related N-acetyl-transferase BER93_06605 PF01047 MarR family BER93_06615 PF00255 Glutathione peroxidase BER93_06620 PF01609 Transposase DDE domain BER93_06620 PF13340 BER93_06620 BER93_06625 PF00175 Oxidoreductase NAD-binding domain BER93_06625 PF00970 Oxidoreductase FAD-binding domain BER93_06630 PF00005 ABC transporter BER93_06635 PF05681 BER93_06635 BER93_06635 PF05683 Fumarase C-terminus BER93_06640 PF00484 Carbonic anhydrase BER93_06655 PF04306 BER93_06655 BER93_06660 PF00313 'Cold-shock' DNA-binding domain BER93_06665 PF05433 BER93_06665 BER93_06675 PF00899 ThiF family BER93_06680 PF01026 TatD related DNase BER93_06690 PF05433 BER93_06690 BER93_06700 PF00043 Glutathione S-transferase, C-terminal domain BER93_06700 PF02798 Glutathione S-transferase, N-terminal domain BER93_06705 PF00733 Asparagine synthase BER93_06705 PF13537 Glutamine amidotransferase domain BER93_06710 PF03358 NADPH-dependent FMN reductase BER93_06715 PF00772 DnaB-like helicase N terminal domain BER93_06715 PF03796 DnaB-like helicase C terminal domain BER93_06720 PF00875 DNA photolyase BER93_06720 PF03441 FAD binding domain of DNA photolyase BER93_06725 PF00691 OmpA family BER93_06725 PF13488 BER93_06725 BER93_06730 PF01609 Transposase DDE domain BER93_06735 PF00665 Integrase core domain BER93_06735 PF13276 BER93_06735 BER93_06740 PF01527 Transposase BER93_06760 PF06114 Domain of unknown function (DUF955) BER93_06760 PF09856 BER93_06760 BER93_06760 PF13560 Helix-turn-helix domain BER93_06765 PF00171 Aldehyde dehydrogenase family BER93_06770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_06770 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_06770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_06775 PF00378 Enoyl-CoA hydratase/isomerase family BER93_06780 PF16113 BER93_06780 BER93_06785 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BER93_06785 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BER93_06790 PF01545 Cation efflux family BER93_06795 PF00378 Enoyl-CoA hydratase/isomerase family BER93_06795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER93_06795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER93_06800 PF04542 Sigma-70 region 2 BER93_06800 PF08281 Sigma-70, region 4 BER93_06805 PF03872 Anti sigma-E protein RseA, N-terminal domain BER93_06810 PF13180 PDZ domain BER93_06810 PF13365 Trypsin-like peptidase domain BER93_06815 PF01609 Transposase DDE domain BER93_06815 PF05598 BER93_06815 BER93_06820 PF01609 Transposase DDE domain BER93_06820 PF05598 BER93_06820 BER93_06825 PF01609 Transposase DDE domain BER93_06830 PF01527 Transposase BER93_06835 PF00665 Integrase core domain BER93_06835 PF13276 BER93_06835 BER93_06840 PF13936 Helix-turn-helix domain BER93_06845 PF01544 CorA-like Mg2+ transporter protein BER93_06850 PF13387 BER93_06850 BER93_06855 PF00571 CBS domain BER93_06855 PF03471 Transporter associated domain BER93_06865 PF02130 Uncharacterized protein family UPF0054 BER93_06870 PF02562 PhoH-like protein BER93_06875 PF00919 Uncharacterized protein family UPF0004 BER93_06875 PF01938 TRAM domain BER93_06875 PF04055 Radical SAM superfamily BER93_06885 PF01464 Transglycosylase SLT domain BER93_06890 PF00355 Rieske [2Fe-2S] domain BER93_06890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BER93_06895 PF00032 Cytochrome b(C-terminal)/b6/petD BER93_06895 PF00033 Cytochrome b(N-terminal)/b6/petB BER93_06900 PF02167 Cytochrome C1 family BER93_06905 PF00043 Glutathione S-transferase, C-terminal domain BER93_06905 PF13417 Glutathione S-transferase, N-terminal domain BER93_06910 PF04386 Stringent starvation protein B BER93_06915 PF11743 BER93_06915 BER93_06920 PF00270 DEAD/DEAH box helicase BER93_06920 PF00271 Helicase conserved C-terminal domain BER93_06920 PF08494 BER93_06920 BER93_06925 PF02245 Methylpurine-DNA glycosylase (MPG) BER93_06940 PF00816 H-NS histone family BER93_06945 PF12244 BER93_06945 BER93_06950 PF01609 Transposase DDE domain BER93_06955 PF00570 HRDC domain BER93_06955 PF01612 3'-5' exonuclease BER93_06960 PF03781 Sulfatase-modifying factor enzyme 1 BER93_06975 PF00009 Elongation factor Tu GTP binding domain BER93_06975 PF00679 Elongation factor G C-terminus BER93_06975 PF03144 Elongation factor Tu domain 2 BER93_06975 PF06421 GTP-binding protein LepA C-terminus BER93_06980 PF00717 Peptidase S24-like BER93_06985 PF16137 BER93_06985 BER93_06990 PF00035 Double-stranded RNA binding motif BER93_06990 PF14622 Ribonuclease-III-like BER93_06995 PF01926 50S ribosome-binding GTPase BER93_06995 PF07650 KH domain BER93_07000 PF02565 Recombination protein O C terminal BER93_07000 PF11967 Recombination protein O N terminal BER93_07005 PF00072 Response regulator receiver domain BER93_07010 PF05958 tRNA (Uracil-5-)-methyltransferase BER93_07015 PF01928 CYTH domain BER93_07020 PF01593 Flavin containing amine oxidoreductase BER93_07020 PF13450 NAD(P)-binding Rossmann-like domain BER93_07025 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BER93_07030 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_07035 PF00156 Phosphoribosyl transferase domain BER93_07040 PF01048 Phosphorylase superfamily BER93_07045 PF00313 'Cold-shock' DNA-binding domain BER93_07050 PF00149 Calcineurin-like phosphoesterase BER93_07055 PF00270 DEAD/DEAH box helicase BER93_07055 PF00271 Helicase conserved C-terminal domain BER93_07055 PF08494 BER93_07055 BER93_07060 PF01068 ATP dependent DNA ligase domain BER93_07060 PF04675 DNA ligase N terminus BER93_07060 PF04679 ATP dependent DNA ligase C terminal region BER93_07085 PF04519 BER93_07085 BER93_07100 PF00108 Thiolase, N-terminal domain BER93_07100 PF02803 Thiolase, C-terminal domain BER93_07105 PF01609 Transposase DDE domain BER93_07105 PF05598 BER93_07105 BER93_07110 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BER93_07110 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BER93_07115 PF08238 Sel1 repeat BER93_07120 PF01863 Protein of unknown function DUF45 BER93_07130 PF07043 BER93_07130 BER93_07135 PF10982 Protein of unknown function (DUF2789) BER93_07140 PF05872 BER93_07140 BER93_07145 PF01464 Transglycosylase SLT domain BER93_07145 PF01476 LysM domain BER93_07160 PF01416 tRNA pseudouridine synthase BER93_07165 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BER93_07180 PF01609 Transposase DDE domain BER93_07180 PF05598 BER93_07180 BER93_07190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_07190 PF03466 LysR substrate binding domain BER93_07195 PF00291 Pyridoxal-phosphate dependent enzyme BER93_07200 PF00290 Tryptophan synthase alpha chain BER93_07205 PF01039 Carboxyl transferase domain BER93_07210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER93_07210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER93_07210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER93_07210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER93_07215 PF03171 2OG-Fe(II) oxygenase superfamily BER93_07215 PF14226 non-haem dioxygenase in morphine synthesis N-terminal BER93_07225 PF00563 EAL domain BER93_07225 PF00672 HAMP domain BER93_07225 PF00990 GGDEF domain BER93_07225 PF14827 Sensory domain of two-component sensor kinase BER93_07230 PF11231 BER93_07230 BER93_07235 PF01152 Bacterial-like globin BER93_07240 PF00106 short chain dehydrogenase BER93_07245 PF00121 Triosephosphate isomerase BER93_07250 PF03840 Preprotein translocase SecG subunit BER93_07260 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BER93_07265 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BER93_07270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BER93_07275 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BER93_07280 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin BER93_07285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BER93_07285 PF10531 SLBB domain BER93_07285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BER93_07290 PF00384 Molybdopterin oxidoreductase BER93_07290 PF01568 Molydopterin dinucleotide binding domain BER93_07290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER93_07290 PF13510 2Fe-2S iron-sulfur cluster binding domain BER93_07295 PF00146 NADH dehydrogenase BER93_07300 PF12838 4Fe-4S dicluster domain BER93_07305 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BER93_07310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BER93_07315 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_07315 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BER93_07320 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_07325 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_07335 PF02576 Uncharacterised BCR, YhbC family COG0779 BER93_07335 PF17384 BER93_07335 BER93_07340 PF00575 S1 RNA binding domain BER93_07340 PF08529 NusA N-terminal domain BER93_07340 PF13184 NusA-like KH domain BER93_07340 PF14520 Helix-hairpin-helix domain BER93_07345 PF00009 Elongation factor Tu GTP binding domain BER93_07345 PF04760 Translation initiation factor IF-2, N-terminal region BER93_07345 PF08364 BER93_07345 BER93_07345 PF11987 Translation-initiation factor 2 BER93_07350 PF02033 Ribosome-binding factor A BER93_07355 PF01509 TruB family pseudouridylate synthase (N terminal domain) BER93_07355 PF09157 Pseudouridine synthase II TruB, C-terminal BER93_07355 PF16198 BER93_07355 BER93_07360 PF00312 Ribosomal protein S15 BER93_07365 PF00013 KH domain BER93_07365 PF00575 S1 RNA binding domain BER93_07365 PF01138 3' exoribonuclease family, domain 1 BER93_07365 PF03725 3' exoribonuclease family, domain 2 BER93_07365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BER93_07370 PF13340 BER93_07370 BER93_07375 PF01609 Transposase DDE domain BER93_07385 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BER93_07385 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BER93_07390 PF03966 Trm112p-like protein BER93_07395 PF00731 AIR carboxylase BER93_07400 PF02222 ATP-grasp domain BER93_07405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BER93_07405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BER93_07410 PF00462 Glutaredoxin BER93_07415 PF00106 short chain dehydrogenase BER93_07420 PF01914 BER93_07420 BER93_07425 PF07715 TonB-dependent Receptor Plug Domain BER93_07425 PF13620 Carboxypeptidase regulatory-like domain BER93_07430 PF03641 Possible lysine decarboxylase BER93_07430 PF11892 Domain of unknown function (DUF3412) BER93_07430 PF14793 Domain of unknown function (DUF4478) BER93_07440 PF06580 BER93_07440 BER93_07445 PF07963 Prokaryotic N-terminal methylation motif BER93_07445 PF16074 BER93_07445 BER93_07450 PF05567 Neisseria PilC beta-propeller domain BER93_07455 PF01609 Transposase DDE domain BER93_07455 PF05598 BER93_07455 BER93_07460 PF00072 Response regulator receiver domain BER93_07460 PF13487 HD domain BER93_07465 PF00072 Response regulator receiver domain BER93_07465 PF00512 His Kinase A (phospho-acceptor) domain BER93_07465 PF01627 Hpt domain BER93_07465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_07465 PF03924 CHASE domain BER93_07465 PF13426 PAS domain BER93_07470 PF04286 BER93_07470 BER93_07475 PF13086 AAA domain BER93_07475 PF13087 AAA domain BER93_07485 PF07690 Major Facilitator Superfamily BER93_07490 PF02634 FdhD/NarQ family BER93_07495 PF00384 Molybdopterin oxidoreductase BER93_07495 PF01568 Molydopterin dinucleotide binding domain BER93_07510 PF01527 Transposase BER93_07515 PF00665 Integrase core domain BER93_07515 PF13276 BER93_07515 BER93_07525 PF01266 FAD dependent oxidoreductase BER93_07530 PF00120 Glutamine synthetase, catalytic domain BER93_07535 PF00120 Glutamine synthetase, catalytic domain BER93_07540 PF13416 Bacterial extracellular solute-binding protein BER93_07545 PF16576 BER93_07545 BER93_07550 PF07690 Major Facilitator Superfamily BER93_07555 PF02321 Outer membrane efflux protein BER93_07560 PF00005 ABC transporter BER93_07560 PF08402 TOBE domain BER93_07565 PF00528 Binding-protein-dependent transport system inner membrane component BER93_07570 PF00528 Binding-protein-dependent transport system inner membrane component BER93_07575 PF00171 Aldehyde dehydrogenase family BER93_07585 PF07536 BER93_07585 BER93_07585 PF08447 PAS fold BER93_07595 PF00873 AcrB/AcrD/AcrF family BER93_07600 PF16576 BER93_07600 BER93_07605 PF00440 Bacterial regulatory proteins, tetR family BER93_07610 PF05088 BER93_07610 BER93_07610 PF12466 BER93_07610 BER93_07635 PF05819 BER93_07635 BER93_07655 PF03693 Uncharacterised protein family (UPF0156) BER93_07665 PF04796 BER93_07665 BER93_07670 PF01609 Transposase DDE domain BER93_07690 PF01609 Transposase DDE domain BER93_07690 PF05598 BER93_07690 BER93_07695 PF01527 Transposase BER93_07705 PF00665 Integrase core domain BER93_07705 PF13333 BER93_07705 BER93_07715 PF00271 Helicase conserved C-terminal domain BER93_07715 PF02151 UvrB/uvrC motif BER93_07715 PF04851 Type III restriction enzyme, res subunit BER93_07715 PF12344 Ultra-violet resistance protein B BER93_07730 PF10671 Toxin co-regulated pilus biosynthesis protein Q BER93_07735 PF04335 VirB8 protein BER93_07745 PF03743 Bacterial conjugation TrbI-like protein BER93_07750 PF00437 Type II/IV secretion system protein BER93_07755 PF01464 Transglycosylase SLT domain BER93_07760 PF04956 BER93_07760 BER93_07765 PF05101 BER93_07765 BER93_07770 PF03135 BER93_07770 BER93_07780 PF04610 BER93_07780 BER93_07790 PF01609 Transposase DDE domain BER93_07790 PF13340 BER93_07790 BER93_07805 PF01471 Putative peptidoglycan binding domain BER93_07820 PF04610 BER93_07820 BER93_07830 PF01471 Putative peptidoglycan binding domain BER93_07835 PF03135 BER93_07835 BER93_07860 PF04610 BER93_07860 BER93_07865 PF07007 Protein of unknown function (DUF1311) BER93_07870 PF01471 Putative peptidoglycan binding domain BER93_07875 PF01609 Transposase DDE domain BER93_07875 PF05598 BER93_07875 BER93_07885 PF06114 Domain of unknown function (DUF955) BER93_07900 PF00589 Phage integrase family BER93_07920 PF01381 Helix-turn-helix BER93_07940 PF13910 BER93_07940 BER93_07945 PF00589 Phage integrase family BER93_07960 PF01668 SmpB protein BER93_07965 PF03364 Polyketide cyclase / dehydrase and lipid transport BER93_07970 PF03658 RnfH family Ubiquitin BER93_07975 PF04355 SmpA / OmlA family BER93_07980 PF01475 Ferric uptake regulator family BER93_07985 PF02463 RecF/RecN/SMC N terminal domain BER93_07990 PF01628 HrcA protein C terminal domain BER93_07990 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BER93_07995 PF01025 GrpE BER93_08000 PF00012 Hsp70 protein BER93_08005 PF00226 DnaJ domain BER93_08005 PF00684 DnaJ central domain BER93_08005 PF01556 DnaJ C terminal domain BER93_08010 PF08543 Phosphomethylpyrimidine kinase BER93_08015 PF01842 ACT domain BER93_08015 PF02153 Prephenate dehydrogenase BER93_08025 PF02321 Outer membrane efflux protein BER93_08030 PF13437 HlyD family secretion protein BER93_08030 PF13533 Biotin-lipoyl like BER93_08050 PF00005 ABC transporter BER93_08050 PF00664 ABC transporter transmembrane region BER93_08055 PF01205 Uncharacterized protein family UPF0029 BER93_08055 PF09186 Domain of unknown function (DUF1949) BER93_08060 PF03641 Possible lysine decarboxylase BER93_08065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_08065 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_08070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BER93_08070 PF00364 Biotin-requiring enzyme BER93_08070 PF02817 e3 binding domain BER93_08075 PF00676 Dehydrogenase E1 component BER93_08075 PF02779 Transketolase, pyrimidine binding domain BER93_08075 PF16078 BER93_08075 BER93_08075 PF16870 BER93_08075 BER93_08080 PF00583 Acetyltransferase (GNAT) family BER93_08085 PF08007 Cupin superfamily protein BER93_08090 PF00206 Lyase BER93_08090 PF08328 Adenylosuccinate lyase C-terminal BER93_08095 PF00206 Lyase BER93_08095 PF10415 Fumarase C C-terminus BER93_08105 PF01527 Transposase BER93_08115 PF00665 Integrase core domain BER93_08120 PF01609 Transposase DDE domain BER93_08130 PF13340 BER93_08130 BER93_08145 PF00005 ABC transporter BER93_08150 PF00392 Bacterial regulatory proteins, gntR family BER93_08160 PF00255 Glutathione peroxidase BER93_08165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_08165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BER93_08170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BER93_08170 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BER93_08170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BER93_08175 PF04102 SlyX BER93_08180 PF09831 BER93_08180 BER93_08185 PF13557 BER93_08185 BER93_08190 PF00356 Bacterial regulatory proteins, lacI family BER93_08190 PF13377 Periplasmic binding protein-like domain BER93_08195 PF07690 Major Facilitator Superfamily BER93_08200 PF00294 pfkB family carbohydrate kinase BER93_08205 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) BER93_08210 PF00809 Pterin binding enzyme BER93_08210 PF02310 B12 binding domain BER93_08210 PF02607 B12 binding domain BER93_08210 PF02965 Vitamin B12 dependent methionine synthase, activation domain BER93_08215 PF02574 Homocysteine S-methyltransferase BER93_08220 PF01022 Bacterial regulatory protein, arsR family BER93_08220 PF08241 Methyltransferase domain BER93_08225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_08225 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_08225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_08230 PF13472 GDSL-like Lipase/Acylhydrolase family BER93_08240 PF00575 S1 RNA binding domain BER93_08240 PF00773 RNB domain BER93_08240 PF08206 Ribonuclease B OB domain BER93_08245 PF00588 SpoU rRNA Methylase family BER93_08245 PF08032 RNA 2'-O ribose methyltransferase substrate binding BER93_08250 PF00990 GGDEF domain BER93_08255 PF00929 Exonuclease BER93_08260 PF01895 PhoU domain BER93_08265 PF00005 ABC transporter BER93_08270 PF00528 Binding-protein-dependent transport system inner membrane component BER93_08275 PF00528 Binding-protein-dependent transport system inner membrane component BER93_08280 PF12849 PBP superfamily domain BER93_08290 PF12849 PBP superfamily domain BER93_08305 PF01609 Transposase DDE domain BER93_08305 PF13340 BER93_08305 BER93_08310 PF00484 Carbonic anhydrase BER93_08315 PF00916 BER93_08315 BER93_08320 PF00633 Helix-hairpin-helix motif BER93_08320 PF00730 HhH-GPD superfamily base excision DNA repair protein BER93_08335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_08335 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BER93_08340 PF00293 NUDIX domain BER93_08340 PF06945 BER93_08340 BER93_08345 PF00581 Rhodanese-like domain BER93_08350 PF07920 Protein of unknown function (DUF1684) BER93_08355 PF01510 N-acetylmuramoyl-L-alanine amidase BER93_08360 PF03473 MOSC domain BER93_08365 PF12697 Alpha/beta hydrolase family BER93_08370 PF00583 Acetyltransferase (GNAT) family BER93_08375 PF13649 Methyltransferase domain BER93_08380 PF01170 Putative RNA methylase family UPF0020 BER93_08380 PF02926 THUMP domain BER93_08380 PF10672 S-adenosylmethionine-dependent methyltransferase BER93_08385 PF01513 ATP-NAD kinase BER93_08390 PF06189 BER93_08390 BER93_08395 PF01609 Transposase DDE domain BER93_08395 PF05598 BER93_08395 BER93_08400 PF11159 BER93_08400 BER93_08410 PF00929 Exonuclease BER93_08410 PF08411 Exonuclease C-terminal BER93_08415 PF01494 FAD binding domain BER93_08420 PF00266 Aminotransferase class-V BER93_08425 PF12805 BER93_08425 BER93_08425 PF13515 BER93_08425 BER93_08430 PF06052 3-hydroxyanthranilic acid dioxygenase BER93_08435 PF00484 Carbonic anhydrase BER93_08460 PF00152 tRNA synthetases class II (D, K and N) BER93_08460 PF01336 OB-fold nucleic acid binding domain BER93_08465 PF01521 Iron-sulphur cluster biosynthesis BER93_08470 PF01250 Ribosomal protein S6 BER93_08475 PF01084 Ribosomal protein S18 BER93_08480 PF01281 Ribosomal protein L9, N-terminal domain BER93_08480 PF03948 Ribosomal protein L9, C-terminal domain BER93_08485 PF02463 RecF/RecN/SMC N terminal domain BER93_08490 PF04354 ZipA, C-terminal FtsZ-binding domain BER93_08495 PF00533 BRCA1 C Terminus (BRCT) domain BER93_08495 PF01653 NAD-dependent DNA ligase adenylation domain BER93_08495 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BER93_08495 PF03120 NAD-dependent DNA ligase OB-fold domain BER93_08495 PF12826 Helix-hairpin-helix motif BER93_08500 PF00152 tRNA synthetases class II (D, K and N) BER93_08505 PF11218 BER93_08505 BER93_08515 PF01008 Initiation factor 2 subunit family BER93_08520 PF00521 DNA gyrase/topoisomerase IV, subunit A BER93_08520 PF03989 DNA gyrase C-terminal domain, beta-propeller BER93_08535 PF01175 Urocanase BER93_08535 PF17391 BER93_08535 BER93_08535 PF17392 BER93_08535 BER93_08540 PF05013 N-formylglutamate amidohydrolase BER93_08545 PF00221 Aromatic amino acid lyase BER93_08550 PF01979 Amidohydrolase family BER93_08555 PF01979 Amidohydrolase family BER93_08560 PF00392 Bacterial regulatory proteins, gntR family BER93_08560 PF07702 UTRA domain BER93_08565 PF05597 BER93_08565 BER93_08570 PF09650 BER93_08570 BER93_08575 PF16697 BER93_08575 BER93_08580 PF01794 BER93_08580 BER93_08585 PF02666 BER93_08585 BER93_08590 PF02630 SCO1/SenC BER93_08595 PF05175 Methyltransferase small domain BER93_08605 PF01264 Chorismate synthase BER93_08610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_08610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER93_08615 PF01118 Semialdehyde dehydrogenase, NAD binding domain BER93_08615 PF02774 Semialdehyde dehydrogenase, dimerisation domain BER93_08625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_08625 PF12729 BER93_08625 BER93_08630 PF06745 KaiC BER93_08635 PF00072 Response regulator receiver domain BER93_08635 PF00512 His Kinase A (phospho-acceptor) domain BER93_08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_08635 PF08448 PAS fold BER93_08640 PF01527 Transposase BER93_08660 PF03918 Cytochrome C biogenesis protein BER93_08665 PF01578 BER93_08665 BER93_08675 PF00082 Subtilase family BER93_08680 PF13490 Putative zinc-finger BER93_08685 PF04542 Sigma-70 region 2 BER93_08685 PF04545 Sigma-70, region 4 BER93_08710 PF00083 Sugar (and other) transporter BER93_08715 PF00296 Luciferase-like monooxygenase BER93_08720 PF06055 BER93_08720 BER93_08725 PF00571 CBS domain BER93_08725 PF01595 BER93_08725 BER93_08725 PF03471 Transporter associated domain BER93_08730 PF01865 Protein of unknown function DUF47 BER93_08735 PF01384 BER93_08735 BER93_08740 PF02698 DUF218 domain BER93_08745 PF00450 Serine carboxypeptidase BER93_08750 PF00204 DNA gyrase B BER93_08750 PF00986 DNA gyrase B subunit, carboxyl terminus BER93_08750 PF01751 Toprim domain BER93_08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_08760 PF00117 Glutamine amidotransferase class-I BER93_08760 PF06418 CTP synthase N-terminus BER93_08765 PF00793 DAHP synthetase I family BER93_08770 PF00113 Enolase, C-terminal TIM barrel domain BER93_08770 PF03952 Enolase, N-terminal domain BER93_08775 PF04977 Septum formation initiator BER93_08780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BER93_08785 PF02542 YgbB family BER93_08790 PF01142 tRNA pseudouridine synthase D (TruD) BER93_08795 PF01713 Smr domain BER93_08800 PF01975 Survival protein SurE BER93_08805 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BER93_08815 PF01476 LysM domain BER93_08815 PF01551 Peptidase family M23 BER93_08855 PF00561 alpha/beta hydrolase fold BER93_08860 PF01609 Transposase DDE domain BER93_08860 PF05598 BER93_08860 BER93_08865 PF13432 Tetratricopeptide repeat BER93_08870 PF03918 Cytochrome C biogenesis protein BER93_08875 PF08534 Redoxin BER93_08880 PF01578 BER93_08880 BER93_08880 PF16327 BER93_08880 BER93_08885 PF03100 CcmE BER93_08890 PF04995 BER93_08890 BER93_08895 PF01578 BER93_08895 BER93_08900 PF03379 BER93_08900 BER93_08905 PF00005 ABC transporter BER93_08910 PF00155 Aminotransferase class I and II BER93_08915 PF00795 Carbon-nitrogen hydrolase BER93_08920 PF05096 Glutamine cyclotransferase BER93_08930 PF00849 RNA pseudouridylate synthase BER93_08930 PF01479 S4 domain BER93_08935 PF04079 Putative transcriptional regulators (Ypuh-like) BER93_08940 PF02616 ScpA/B protein BER93_08945 PF03795 YCII-related domain BER93_08950 PF01722 BolA-like protein BER93_08955 PF00356 Bacterial regulatory proteins, lacI family BER93_08955 PF13377 Periplasmic binding protein-like domain BER93_08960 PF00593 TonB dependent receptor BER93_08960 PF13620 Carboxypeptidase regulatory-like domain BER93_08965 PF10091 Putative glucoamylase BER93_08970 PF13416 Bacterial extracellular solute-binding protein BER93_08975 PF00528 Binding-protein-dependent transport system inner membrane component BER93_08980 PF00528 Binding-protein-dependent transport system inner membrane component BER93_08985 PF00754 F5/8 type C domain BER93_08985 PF17389 BER93_08985 BER93_08995 PF01609 Transposase DDE domain BER93_08995 PF05598 BER93_08995 BER93_09000 PF01963 BER93_09000 BER93_09010 PF00795 Carbon-nitrogen hydrolase BER93_09015 PF04371 Porphyromonas-type peptidyl-arginine deiminase BER93_09025 PF02224 Cytidylate kinase BER93_09030 PF00575 S1 RNA binding domain BER93_09035 PF00216 Bacterial DNA-binding protein BER93_09040 PF06305 BER93_09040 BER93_09045 PF13432 Tetratricopeptide repeat BER93_09050 PF00953 Glycosyl transferase family 4 BER93_09055 PF02719 Polysaccharide biosynthesis protein BER93_09055 PF13727 CoA-binding domain BER93_09060 PF00483 Nucleotidyl transferase BER93_09065 PF00999 Sodium/hydrogen exchanger family BER93_09070 PF01527 Transposase BER93_09085 PF01609 Transposase DDE domain BER93_09095 PF06844 Protein of unknown function (DUF1244) BER93_09100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BER93_09100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BER93_09105 PF00478 IMP dehydrogenase / GMP reductase domain BER93_09105 PF00571 CBS domain BER93_09110 PF00117 Glutamine amidotransferase class-I BER93_09110 PF00958 GMP synthase C terminal domain BER93_09110 PF02540 NAD synthase BER93_09115 PF00589 Phage integrase family BER93_09115 PF13356 Domain of unknown function (DUF4102) BER93_09120 PF05930 Prophage CP4-57 regulatory protein (AlpA) BER93_09125 PF01609 Transposase DDE domain BER93_09125 PF05598 BER93_09125 BER93_09140 PF13481 AAA domain BER93_09145 PF06504 BER93_09145 BER93_09150 PF17273 BER93_09150 BER93_09155 PF03869 Arc-like DNA binding domain BER93_09160 PF01850 PIN domain BER93_09165 PF07996 Type IV secretion system proteins BER93_09170 PF01527 Transposase BER93_09175 PF01609 Transposase DDE domain BER93_09175 PF05598 BER93_09175 BER93_09180 PF00665 Integrase core domain BER93_09180 PF13276 BER93_09180 BER93_09195 PF01609 Transposase DDE domain BER93_09200 PF01609 Transposase DDE domain BER93_09200 PF13340 BER93_09200 BER93_09205 PF01609 Transposase DDE domain BER93_09205 PF05598 BER93_09205 BER93_09210 PF03129 Anticodon binding domain BER93_09210 PF13393 Histidyl-tRNA synthetase BER93_09215 PF01371 Trp repressor protein BER93_09220 PF01634 ATP phosphoribosyltransferase BER93_09220 PF08029 HisG, C-terminal domain BER93_09225 PF00815 Histidinol dehydrogenase BER93_09230 PF00155 Aminotransferase class I and II BER93_09235 PF00475 Imidazoleglycerol-phosphate dehydratase BER93_09240 PF00117 Glutamine amidotransferase class-I BER93_09245 PF00977 Histidine biosynthesis protein BER93_09250 PF00977 Histidine biosynthesis protein BER93_09255 PF01502 Phosphoribosyl-AMP cyclohydrolase BER93_09255 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BER93_09260 PF00149 Calcineurin-like phosphoesterase BER93_09260 PF16370 BER93_09260 BER93_09260 PF16371 BER93_09260 BER93_09270 PF01609 Transposase DDE domain BER93_09275 PF01650 Peptidase C13 family BER93_09285 PF03079 ARD/ARD' family BER93_09290 PF00596 Class II Aldolase and Adducin N-terminal domain BER93_09295 PF13520 Amino acid permease BER93_09300 PF13520 Amino acid permease BER93_09305 PF00293 NUDIX domain BER93_09310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BER93_09310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BER93_09315 PF01565 FAD binding domain BER93_09315 PF02913 FAD linked oxidases, C-terminal domain BER93_09320 PF09498 BER93_09320 BER93_09325 PF13387 BER93_09325 BER93_09330 PF01132 Elongation factor P (EF-P) OB domain BER93_09330 PF08207 Elongation factor P (EF-P) KOW-like domain BER93_09330 PF09285 Elongation factor P, C-terminal BER93_09335 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_09340 PF00682 HMGL-like BER93_09345 PF00378 Enoyl-CoA hydratase/isomerase family BER93_09350 PF04023 FeoA domain BER93_09355 PF02421 Ferrous iron transport protein B BER93_09355 PF07664 BER93_09355 BER93_09355 PF07670 Nucleoside recognition BER93_09370 PF01113 Dihydrodipicolinate reductase, N-terminus BER93_09370 PF05173 Dihydrodipicolinate reductase, C-terminus BER93_09375 PF00117 Glutamine amidotransferase class-I BER93_09375 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BER93_09380 PF13304 AAA domain BER93_09385 PF01850 PIN domain BER93_09390 PF02142 MGS-like domain BER93_09390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER93_09390 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BER93_09395 PF01272 Transcription elongation factor, GreA/GreB, C-term BER93_09395 PF03449 Transcription elongation factor, N-terminal BER93_09405 PF01368 DHH family BER93_09405 PF02272 DHHA1 domain BER93_09410 PF00472 RF-1 domain BER93_09410 PF03462 PCRF domain BER93_09415 PF00152 tRNA synthetases class II (D, K and N) BER93_09415 PF01336 OB-fold nucleic acid binding domain BER93_09420 PF00072 Response regulator receiver domain BER93_09420 PF01966 HD domain BER93_09430 PF00072 Response regulator receiver domain BER93_09430 PF00512 His Kinase A (phospho-acceptor) domain BER93_09430 PF01627 Hpt domain BER93_09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_09435 PF00378 Enoyl-CoA hydratase/isomerase family BER93_09440 PF00501 AMP-binding enzyme BER93_09440 PF13193 AMP-binding enzyme C-terminal domain BER93_09450 PF00330 Aconitase family (aconitate hydratase) BER93_09450 PF00694 Aconitase C-terminal domain BER93_09455 PF04014 Antidote-toxin recognition MazE BER93_09460 PF01850 PIN domain BER93_09465 PF00330 Aconitase family (aconitate hydratase) BER93_09465 PF06434 Aconitate hydratase 2 N-terminus BER93_09465 PF11791 Aconitate B N-terminal domain BER93_09470 PF00561 alpha/beta hydrolase fold BER93_09475 PF00563 EAL domain BER93_09475 PF00990 GGDEF domain BER93_09475 PF13185 GAF domain BER93_09475 PF13426 PAS domain BER93_09480 PF00072 Response regulator receiver domain BER93_09480 PF01339 CheB methylesterase BER93_09485 PF03975 CheD chemotactic sensory transduction BER93_09490 PF01739 CheR methyltransferase, SAM binding domain BER93_09490 PF03705 CheR methyltransferase, all-alpha domain BER93_09500 PF01584 CheW-like domain BER93_09510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09510 PF00672 HAMP domain BER93_09510 PF12729 BER93_09510 BER93_09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09520 PF00672 HAMP domain BER93_09520 PF12729 BER93_09520 BER93_09525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09525 PF00672 HAMP domain BER93_09525 PF12729 BER93_09525 BER93_09535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_09535 PF12729 BER93_09535 BER93_09545 PF13557 BER93_09545 BER93_09560 PF01584 CheW-like domain BER93_09560 PF01627 Hpt domain BER93_09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_09560 PF02895 Signal transducing histidine kinase, homodimeric domain BER93_09565 PF00072 Response regulator receiver domain BER93_09570 PF13466 STAS domain BER93_09575 PF01584 CheW-like domain BER93_09580 PF13614 AAA domain BER93_09585 PF00691 OmpA family BER93_09585 PF13677 BER93_09585 BER93_09590 PF01618 BER93_09590 BER93_09615 PF02486 BER93_09615 BER93_09620 PF02303 Helix-destabilising protein BER93_09635 PF10734 BER93_09635 BER93_09640 PF05707 Zonular occludens toxin (Zot) BER93_09655 PF02486 BER93_09655 BER93_09680 PF10734 BER93_09680 BER93_09685 PF05707 Zonular occludens toxin (Zot) BER93_09695 PF12375 BER93_09695 BER93_09705 PF01106 NifU-like domain BER93_09710 PF01329 Pterin 4 alpha carbinolamine dehydratase BER93_09715 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_09720 PF01527 Transposase BER93_09725 PF00665 Integrase core domain BER93_09725 PF13276 BER93_09725 BER93_09730 PF13333 BER93_09730 BER93_09740 PF01609 Transposase DDE domain BER93_09750 PF00849 RNA pseudouridylate synthase BER93_09750 PF01479 S4 domain BER93_09755 PF00575 S1 RNA binding domain BER93_09755 PF10150 Ribonuclease E/G family BER93_09760 PF00072 Response regulator receiver domain BER93_09760 PF00196 Bacterial regulatory proteins, luxR family BER93_09765 PF00581 Rhodanese-like domain BER93_09775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_09785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BER93_09785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BER93_09785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BER93_09795 PF01609 Transposase DDE domain BER93_09795 PF05598 BER93_09795 BER93_09805 PF01527 Transposase BER93_09815 PF00665 Integrase core domain BER93_09835 PF11745 BER93_09835 BER93_09840 PF13503 BER93_09840 BER93_09845 PF05954 Phage late control gene D protein (GPD) BER93_09845 PF10106 BER93_09845 BER93_09845 PF13296 BER93_09845 BER93_09855 PF00004 ATPase family associated with various cellular activities (AAA) BER93_09855 PF02861 Clp amino terminal domain BER93_09855 PF07724 AAA domain (Cdc48 subfamily) BER93_09855 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_09860 PF06996 BER93_09860 BER93_09865 PF05947 BER93_09865 BER93_09870 PF04965 Gene 25-like lysozyme BER93_09875 PF05638 Protein of unknown function (DUF796) BER93_09880 PF05943 BER93_09880 BER93_09885 PF05591 BER93_09885 BER93_09895 PF12790 Type VI secretion lipoprotein BER93_09900 PF05936 BER93_09900 BER93_09905 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) BER93_09910 PF10106 BER93_09910 BER93_09910 PF13296 BER93_09910 BER93_09920 PF15584 BER93_09920 BER93_09920 PF15602 BER93_09920 BER93_09930 PF15584 BER93_09930 BER93_09930 PF15602 BER93_09930 BER93_09935 PF10106 BER93_09935 BER93_09935 PF13296 BER93_09935 BER93_09945 PF15584 BER93_09945 BER93_09945 PF15602 BER93_09945 BER93_09955 PF15584 BER93_09955 BER93_09955 PF15602 BER93_09955 BER93_09965 PF15584 BER93_09965 BER93_09965 PF15602 BER93_09965 BER93_09975 PF10106 BER93_09975 BER93_09975 PF13296 BER93_09975 BER93_09980 PF01527 Transposase BER93_09985 PF01609 Transposase DDE domain BER93_09985 PF13340 BER93_09985 BER93_10010 PF10685 BER93_10010 BER93_10015 PF05974 Domain of unknown function (DUF892) BER93_10030 PF01609 Transposase DDE domain BER93_10030 PF05598 BER93_10030 BER93_10040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER93_10040 PF10414 Sirohaem synthase dimerisation region BER93_10040 PF13241 Putative NAD(P)-binding BER93_10040 PF14824 Sirohaem biosynthesis protein central BER93_10050 PF12804 MobA-like NTP transferase domain BER93_10055 PF00994 Probable molybdopterin binding domain BER93_10055 PF03453 MoeA N-terminal region (domain I and II) BER93_10055 PF03454 MoeA C-terminal region (domain IV) BER93_10065 PF06884 BER93_10065 BER93_10070 PF00593 TonB dependent receptor BER93_10070 PF07715 TonB-dependent Receptor Plug Domain BER93_10075 PF00581 Rhodanese-like domain BER93_10075 PF00899 ThiF family BER93_10080 PF00994 Probable molybdopterin binding domain BER93_10080 PF03453 MoeA N-terminal region (domain I and II) BER93_10080 PF03454 MoeA C-terminal region (domain IV) BER93_10085 PF01926 50S ribosome-binding GTPase BER93_10085 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BER93_10090 PF01011 PQQ enzyme repeat BER93_10090 PF13360 PQQ-like domain BER93_10095 PF09976 Tetratricopeptide repeat BER93_10100 PF13413 Helix-turn-helix domain BER93_10100 PF13464 BER93_10100 BER93_10105 PF13181 Tetratricopeptide repeat BER93_10105 PF13432 Tetratricopeptide repeat BER93_10110 PF04055 Radical SAM superfamily BER93_10115 PF00334 Nucleoside diphosphate kinase BER93_10120 PF00440 Bacterial regulatory proteins, tetR family BER93_10125 PF00378 Enoyl-CoA hydratase/isomerase family BER93_10125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BER93_10125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BER93_10130 PF00108 Thiolase, N-terminal domain BER93_10130 PF02803 Thiolase, C-terminal domain BER93_10135 PF00654 Voltage gated chloride channel BER93_10140 PF01609 Transposase DDE domain BER93_10140 PF05598 BER93_10140 BER93_10145 PF00004 ATPase family associated with various cellular activities (AAA) BER93_10145 PF12002 MgsA AAA+ ATPase C terminal BER93_10145 PF16193 BER93_10145 BER93_10150 PF03548 Outer membrane lipoprotein carrier protein LolA BER93_10155 PF01841 Transglutaminase-like superfamily BER93_10155 PF12969 Domain of Unknown Function with PDB structure (DUF3857) BER93_10160 PF01580 FtsK/SpoIIIE family BER93_10160 PF09397 Ftsk gamma domain BER93_10160 PF13491 BER93_10160 BER93_10165 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_10170 PF04339 BER93_10170 BER93_10175 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BER93_10180 PF01176 Translation initiation factor 1A / IF-1 BER93_10185 PF00004 ATPase family associated with various cellular activities (AAA) BER93_10185 PF02861 Clp amino terminal domain BER93_10185 PF07724 AAA domain (Cdc48 subfamily) BER93_10185 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_10190 PF02617 ATP-dependent Clp protease adaptor protein ClpS BER93_10195 PF00293 NUDIX domain BER93_10200 PF03054 tRNA methyl transferase BER93_10205 PF04356 Protein of unknown function (DUF489) BER93_10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_10230 PF07730 Histidine kinase BER93_10230 PF08448 PAS fold BER93_10230 PF13426 PAS domain BER93_10235 PF00072 Response regulator receiver domain BER93_10235 PF00563 EAL domain BER93_10235 PF00990 GGDEF domain BER93_10240 PF00512 His Kinase A (phospho-acceptor) domain BER93_10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_10250 PF04316 Anti-sigma-28 factor, FlgM BER93_10255 PF13144 SAF-like BER93_10260 PF00072 Response regulator receiver domain BER93_10260 PF01584 CheW-like domain BER93_10265 PF00460 Flagella basal body rod protein BER93_10270 PF00460 Flagella basal body rod protein BER93_10270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_10275 PF03963 BER93_10275 BER93_10275 PF13860 FlgD Ig-like domain BER93_10275 PF13861 FlgD Tudor-like domain BER93_10280 PF00460 Flagella basal body rod protein BER93_10280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_10280 PF07559 Flagellar basal body protein FlaE BER93_10285 PF00460 Flagella basal body rod protein BER93_10285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_10290 PF00460 Flagella basal body rod protein BER93_10290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_10295 PF02107 BER93_10295 BER93_10300 PF02119 BER93_10300 BER93_10305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BER93_10305 PF10135 BER93_10305 BER93_10310 PF00460 Flagella basal body rod protein BER93_10310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BER93_10315 PF00669 Bacterial flagellin N-terminal helical region BER93_10315 PF00700 Bacterial flagellin C-terminal helical region BER93_10320 PF00669 Bacterial flagellin N-terminal helical region BER93_10320 PF00700 Bacterial flagellin C-terminal helical region BER93_10320 PF07196 Flagellin hook IN motif BER93_10325 PF02465 BER93_10325 BER93_10325 PF07195 BER93_10325 BER93_10325 PF07196 Flagellin hook IN motif BER93_10330 PF02561 Flagellar protein FliS BER93_10340 PF16823 BER93_10340 BER93_10345 PF00072 Response regulator receiver domain BER93_10345 PF00196 Bacterial regulatory proteins, luxR family BER93_10350 PF00309 BER93_10350 BER93_10350 PF04552 Sigma-54, DNA binding domain BER93_10350 PF04963 Sigma-54 factor, core binding domain BER93_10355 PF00072 Response regulator receiver domain BER93_10360 PF00158 Sigma-54 interaction domain BER93_10360 PF02954 Bacterial regulatory protein, Fis family BER93_10360 PF06490 BER93_10360 BER93_10365 PF01609 Transposase DDE domain BER93_10370 PF00535 Glycosyl transferase family 2 BER93_10380 PF02049 BER93_10380 BER93_10385 PF01514 Secretory protein of YscJ/FliF family BER93_10385 PF08345 BER93_10385 BER93_10390 PF01706 FliG C-terminal domain BER93_10390 PF14841 FliG middle domain BER93_10390 PF14842 FliG N-terminal domain BER93_10395 PF02108 BER93_10395 BER93_10400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_10405 PF02050 Flagellar FliJ protein BER93_10410 PF02120 Flagellar hook-length control protein FliK BER93_10415 PF03748 BER93_10415 BER93_10420 PF01052 Surface presentation of antigens (SPOA) BER93_10420 PF02154 Flagellar motor switch protein FliM BER93_10425 PF01052 Surface presentation of antigens (SPOA) BER93_10430 PF04347 BER93_10430 BER93_10435 PF00813 BER93_10435 BER93_10440 PF01313 BER93_10440 BER93_10445 PF01311 BER93_10445 BER93_10455 PF00990 GGDEF domain BER93_10460 PF00990 GGDEF domain BER93_10460 PF07495 Y_Y_Y domain BER93_10465 PF01312 FlhB HrpN YscU SpaS Family BER93_10470 PF00771 FHIPEP family BER93_10475 PF00448 SRP54-type protein, GTPase domain BER93_10480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_10485 PF04539 Sigma-70 region 3 BER93_10485 PF04542 Sigma-70 region 2 BER93_10485 PF04545 Sigma-70, region 4 BER93_10490 PF00072 Response regulator receiver domain BER93_10495 PF04344 Chemotaxis phosphatase, CheZ BER93_10500 PF01584 CheW-like domain BER93_10500 PF01627 Hpt domain BER93_10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_10500 PF02895 Signal transducing histidine kinase, homodimeric domain BER93_10520 PF01609 Transposase DDE domain BER93_10520 PF13340 BER93_10520 BER93_10555 PF01609 Transposase DDE domain BER93_10565 PF00082 Subtilase family BER93_10565 PF03797 Autotransporter beta-domain BER93_10565 PF12951 BER93_10565 BER93_10570 PF00873 AcrB/AcrD/AcrF family BER93_10580 PF01527 Transposase BER93_10585 PF01609 Transposase DDE domain BER93_10595 PF01609 Transposase DDE domain BER93_10600 PF13645 BER93_10600 BER93_10605 PF00291 Pyridoxal-phosphate dependent enzyme BER93_10605 PF14821 Threonine synthase N terminus BER93_10620 PF01609 Transposase DDE domain BER93_10620 PF05598 BER93_10620 BER93_10625 PF00288 GHMP kinases N terminal domain BER93_10625 PF08544 GHMP kinases C terminal BER93_10630 PF00696 Amino acid kinase family BER93_10630 PF00742 Homoserine dehydrogenase BER93_10630 PF03447 Homoserine dehydrogenase, NAD binding domain BER93_10630 PF13840 ACT domain BER93_10640 PF01527 Transposase BER93_10650 PF01609 Transposase DDE domain BER93_10650 PF05598 BER93_10650 BER93_10655 PF05876 BER93_10655 BER93_10675 PF01609 Transposase DDE domain BER93_10675 PF13340 BER93_10675 BER93_10680 PF13604 AAA domain BER93_10685 PF00665 Integrase core domain BER93_10685 PF13276 BER93_10685 BER93_10690 PF01527 Transposase BER93_10695 PF00171 Aldehyde dehydrogenase family BER93_10700 PF13828 BER93_10700 BER93_10705 PF08241 Methyltransferase domain BER93_10710 PF01180 Dihydroorotate dehydrogenase BER93_10715 PF01565 FAD binding domain BER93_10715 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BER93_10720 PF00892 EamA-like transporter family BER93_10725 PF01569 PAP2 superfamily BER93_10730 PF04551 GcpE protein BER93_10735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_10740 PF00072 Response regulator receiver domain BER93_10740 PF02954 Bacterial regulatory protein, Fis family BER93_10750 PF00563 EAL domain BER93_10750 PF00990 GGDEF domain BER93_10750 PF01590 GAF domain BER93_10770 PF01609 Transposase DDE domain BER93_10770 PF05598 BER93_10770 BER93_10790 PF00474 Sodium:solute symporter family BER93_10795 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_10795 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER93_10800 PF05787 Bacterial protein of unknown function (DUF839) BER93_10805 PF02534 Type IV secretory system Conjugative DNA transfer BER93_10830 PF01471 Putative peptidoglycan binding domain BER93_10840 PF00342 Phosphoglucose isomerase BER93_10845 PF02261 Aspartate decarboxylase BER93_10850 PF02569 Pantoate-beta-alanine ligase BER93_10855 PF02548 Ketopantoate hydroxymethyltransferase BER93_10860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BER93_10865 PF01743 Poly A polymerase head domain BER93_10865 PF12626 Polymerase A arginine-rich C-terminus BER93_10865 PF12627 Probable RNA and SrmB- binding site of polymerase A BER93_10875 PF02649 Type I GTP cyclohydrolase folE2 BER93_10880 PF00083 Sugar (and other) transporter BER93_10890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BER93_10890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BER93_10895 PF14498 Glycosyl hydrolase family 65, N-terminal domain BER93_10900 PF01055 Glycosyl hydrolases family 31 BER93_10900 PF07691 PA14 domain BER93_10900 PF16338 BER93_10900 BER93_10900 PF17137 BER93_10900 BER93_10905 PF02449 Beta-galactosidase BER93_10910 PF03629 Domain of unknown function (DUF303) BER93_10910 PF13364 Beta-galactosidase jelly roll domain BER93_10915 PF00593 TonB dependent receptor BER93_10915 PF07715 TonB-dependent Receptor Plug Domain BER93_10920 PF05598 BER93_10920 BER93_10935 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_10945 PF03466 LysR substrate binding domain BER93_10950 PF01081 KDPG and KHG aldolase BER93_10955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER93_10955 PF13378 Enolase C-terminal domain-like BER93_10960 PF08450 SMP-30/Gluconolaconase/LRE-like region BER93_10965 PF05035 2-keto-3-deoxy-galactonokinase BER93_10970 PF00037 4Fe-4S binding domain BER93_10970 PF11953 Domain of unknown function (DUF3470) BER93_10980 PF00701 Dihydrodipicolinate synthetase family BER93_10985 PF13740 ACT domain BER93_10990 PF06877 Regulator of ribonuclease activity B BER93_10995 PF00578 AhpC/TSA family BER93_11000 PF02562 PhoH-like protein BER93_11000 PF13638 PIN domain BER93_11010 PF08543 Phosphomethylpyrimidine kinase BER93_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_11025 PF03466 LysR substrate binding domain BER93_11030 PF02678 Pirin BER93_11050 PF02599 Global regulator protein family BER93_11055 PF01411 tRNA synthetases class II (A) BER93_11055 PF02272 DHHA1 domain BER93_11055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BER93_11060 PF02631 RecX family BER93_11065 PF00154 recA bacterial DNA recombination protein BER93_11070 PF00717 Peptidase S24-like BER93_11070 PF01726 LexA DNA binding domain BER93_11075 PF03109 BER93_11075 BER93_11085 PF00593 TonB dependent receptor BER93_11100 PF13229 Right handed beta helix region BER93_11100 PF16380 BER93_11100 BER93_11125 PF01527 Transposase BER93_11130 PF13683 BER93_11130 BER93_11150 PF11740 BER93_11150 BER93_11155 PF00589 Phage integrase family BER93_11175 PF07715 TonB-dependent Receptor Plug Domain BER93_11180 PF02464 Competence-damaged protein BER93_11190 PF01926 50S ribosome-binding GTPase BER93_11190 PF13167 BER93_11190 BER93_11190 PF16360 BER93_11190 BER93_11195 PF17209 BER93_11195 BER93_11200 PF01715 IPP transferase BER93_11205 PF00809 Pterin binding enzyme BER93_11210 PF00004 ATPase family associated with various cellular activities (AAA) BER93_11210 PF01434 Peptidase family M41 BER93_11210 PF06480 FtsH Extracellular BER93_11215 PF01728 FtsJ-like methyltransferase BER93_11220 PF01985 CRS1 / YhbY (CRM) domain BER93_11225 PF04430 Protein of unknown function (DUF498/DUF598) BER93_11230 PF01609 Transposase DDE domain BER93_11230 PF13340 BER93_11230 BER93_11235 PF01609 Transposase DDE domain BER93_11245 PF01527 Transposase BER93_11285 PF11745 BER93_11285 BER93_11295 PF11745 BER93_11295 BER93_11300 PF11745 BER93_11300 BER93_11305 PF13503 BER93_11305 BER93_11310 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_11315 PF11745 BER93_11315 BER93_11320 PF11745 BER93_11320 BER93_11325 PF13503 BER93_11325 BER93_11330 PF05954 Phage late control gene D protein (GPD) BER93_11330 PF10106 BER93_11330 BER93_11330 PF13296 BER93_11330 BER93_11335 PF03781 Sulfatase-modifying factor enzyme 1 BER93_11345 PF05954 Phage late control gene D protein (GPD) BER93_11345 PF10106 BER93_11345 BER93_11345 PF13296 BER93_11345 BER93_11350 PF05360 BER93_11350 BER93_11355 PF06812 BER93_11355 BER93_11360 PF00691 OmpA family BER93_11365 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) BER93_11370 PF06744 BER93_11370 BER93_11370 PF06761 BER93_11370 BER93_11370 PF14331 BER93_11370 BER93_11380 PF05488 PAAR motif BER93_11385 PF13539 D-alanyl-D-alanine carboxypeptidase BER93_11395 PF05593 BER93_11395 BER93_11410 PF08845 BER93_11410 BER93_11445 PF05954 Phage late control gene D protein (GPD) BER93_11450 PF13340 BER93_11450 BER93_11455 PF01609 Transposase DDE domain BER93_11460 PF01609 Transposase DDE domain BER93_11460 PF05598 BER93_11460 BER93_11465 PF01609 Transposase DDE domain BER93_11465 PF13340 BER93_11465 BER93_11480 PF01609 Transposase DDE domain BER93_11500 PF01066 CDP-alcohol phosphatidyltransferase BER93_11505 PF01541 GIY-YIG catalytic domain BER93_11505 PF02151 UvrB/uvrC motif BER93_11505 PF08459 UvrC Helix-hairpin-helix N-terminal BER93_11510 PF01436 NHL repeat BER93_11520 PF02348 Cytidylyltransferase BER93_11525 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BER93_11530 PF00005 ABC transporter BER93_11530 PF00664 ABC transporter transmembrane region BER93_11535 PF02472 Biopolymer transport protein ExbD/TolR BER93_11540 PF01618 BER93_11540 BER93_11545 PF00753 Metallo-beta-lactamase superfamily BER93_11545 PF03772 BER93_11545 BER93_11545 PF13567 BER93_11545 BER93_11550 PF01370 NAD dependent epimerase/dehydratase family BER93_11555 PF00005 ABC transporter BER93_11560 PF02687 BER93_11560 BER93_11560 PF12704 MacB-like periplasmic core domain BER93_11570 PF03937 Flavinator of succinate dehydrogenase BER93_11575 PF13085 2Fe-2S iron-sulfur cluster binding domain BER93_11575 PF13534 4Fe-4S dicluster domain BER93_11585 PF00890 FAD binding domain BER93_11585 PF02910 Fumarate reductase flavoprotein C-term BER93_11590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BER93_11595 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BER93_11600 PF01571 Aminomethyltransferase folate-binding domain BER93_11600 PF08669 Glycine cleavage T-protein C-terminal barrel domain BER93_11605 PF00005 ABC transporter BER93_11605 PF08402 TOBE domain BER93_11610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BER93_11610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BER93_11615 PF02685 Glucokinase BER93_11620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BER93_11625 PF00920 Dehydratase family BER93_11630 PF01081 KDPG and KHG aldolase BER93_11640 PF00034 Cytochrome c BER93_11645 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BER93_11660 PF01609 Transposase DDE domain BER93_11660 PF05598 BER93_11660 BER93_11680 PF00072 Response regulator receiver domain BER93_11685 PF00072 Response regulator receiver domain BER93_11685 PF00512 His Kinase A (phospho-acceptor) domain BER93_11685 PF01590 GAF domain BER93_11685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_11685 PF08447 PAS fold BER93_11685 PF08448 PAS fold BER93_11685 PF13185 GAF domain BER93_11690 PF00575 S1 RNA binding domain BER93_11690 PF09371 Tex-like protein N-terminal domain BER93_11690 PF12836 Helix-hairpin-helix motif BER93_11690 PF16921 BER93_11690 BER93_11710 PF04024 BER93_11710 BER93_11715 PF00561 alpha/beta hydrolase fold BER93_11720 PF09712 BER93_11720 BER93_11725 PF01066 CDP-alcohol phosphatidyltransferase BER93_11730 PF00293 NUDIX domain BER93_11735 PF06853 BER93_11735 BER93_11740 PF03618 BER93_11740 BER93_11745 PF00391 PEP-utilising enzyme, mobile domain BER93_11745 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BER93_11745 PF02896 PEP-utilising enzyme, TIM barrel domain BER93_11750 PF00924 Mechanosensitive ion channel BER93_11755 PF00929 Exonuclease BER93_11760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BER93_11765 PF01325 Iron dependent repressor, N-terminal DNA binding domain BER93_11765 PF02742 Iron dependent repressor, metal binding and dimerisation domain BER93_11770 PF01566 BER93_11770 BER93_11775 PF00561 alpha/beta hydrolase fold BER93_11780 PF01609 Transposase DDE domain BER93_11780 PF05598 BER93_11780 BER93_11815 PF03389 MobA/MobL family BER93_11820 PF01527 Transposase BER93_11840 PF00665 Integrase core domain BER93_11840 PF13276 BER93_11840 BER93_11845 PF01527 Transposase BER93_11850 PF13195 BER93_11850 BER93_11855 PF01609 Transposase DDE domain BER93_11855 PF05598 BER93_11855 BER93_11865 PF00171 Aldehyde dehydrogenase family BER93_11870 PF00696 Amino acid kinase family BER93_11870 PF01472 PUA domain BER93_11875 PF03795 YCII-related domain BER93_11880 PF07883 Cupin domain BER93_11885 PF00206 Lyase BER93_11890 PF01118 Semialdehyde dehydrogenase, NAD binding domain BER93_11895 PF13302 Acetyltransferase (GNAT) domain BER93_11900 PF00696 Amino acid kinase family BER93_11900 PF04768 Protein of unknown function (DUF619) BER93_11905 PF01546 Peptidase family M20/M25/M40 BER93_11905 PF07687 Peptidase dimerisation domain BER93_11910 PF00764 Arginosuccinate synthase BER93_11915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BER93_11915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BER93_11925 PF01406 tRNA synthetases class I (C) catalytic domain BER93_11925 PF09190 DALR domain BER93_11930 PF02657 Fe-S metabolism associated domain BER93_11935 PF05977 Transmembrane secretion effector BER93_11940 PF01258 Prokaryotic dksA/traR C4-type zinc finger BER93_11945 PF01809 BER93_11945 BER93_11950 PF01979 Amidohydrolase family BER93_11955 PF01551 Peptidase family M23 BER93_11960 PF01609 Transposase DDE domain BER93_11960 PF05598 BER93_11960 BER93_11965 PF16242 BER93_11965 BER93_11980 PF00544 Pectate lyase BER93_11985 PF00295 Glycosyl hydrolases family 28 BER93_11995 PF13419 Haloacid dehalogenase-like hydrolase BER93_12000 PF13489 Methyltransferase domain BER93_12005 PF01979 Amidohydrolase family BER93_12015 PF01132 Elongation factor P (EF-P) OB domain BER93_12015 PF08207 Elongation factor P (EF-P) KOW-like domain BER93_12015 PF09285 Elongation factor P, C-terminal BER93_12020 PF04055 Radical SAM superfamily BER93_12020 PF13394 4Fe-4S single cluster domain BER93_12025 PF00588 SpoU rRNA Methylase family BER93_12030 PF00459 Inositol monophosphatase family BER93_12035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BER93_12035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BER93_12040 PF00545 ribonuclease BER93_12045 PF01337 Barstar (barnase inhibitor) BER93_12050 PF00005 ABC transporter BER93_12050 PF12848 ABC transporter BER93_12050 PF16326 BER93_12050 BER93_12055 PF00270 DEAD/DEAH box helicase BER93_12055 PF00271 Helicase conserved C-terminal domain BER93_12055 PF03880 DbpA RNA binding domain BER93_12060 PF00156 Phosphoribosyl transferase domain BER93_12065 PF02696 BER93_12065 BER93_12070 PF07859 alpha/beta hydrolase fold BER93_12075 PF00043 Glutathione S-transferase, C-terminal domain BER93_12075 PF02798 Glutathione S-transferase, N-terminal domain BER93_12080 PF00313 'Cold-shock' DNA-binding domain BER93_12090 PF07152 YaeQ protein BER93_12095 PF03486 HI0933-like protein BER93_12100 PF00563 EAL domain BER93_12100 PF00990 GGDEF domain BER93_12100 PF13188 PAS domain BER93_12105 PF01435 Peptidase family M48 BER93_12110 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER93_12115 PF00106 short chain dehydrogenase BER93_12120 PF05233 BER93_12120 BER93_12120 PF07879 BER93_12120 BER93_12125 PF01963 BER93_12125 BER93_12130 PF07920 Protein of unknown function (DUF1684) BER93_12135 PF01119 DNA mismatch repair protein, C-terminal domain BER93_12135 PF08676 MutL C terminal dimerisation domain BER93_12135 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_12140 PF01520 N-acetylmuramoyl-L-alanine amidase BER93_12140 PF11741 AMIN domain BER93_12145 PF02367 Uncharacterised P-loop hydrolase UPF0079 BER93_12150 PF01256 Carbohydrate kinase BER93_12150 PF03853 YjeF-related protein N-terminus BER93_12155 PF08331 BER93_12155 BER93_12155 PF13484 BER93_12155 BER93_12160 PF02601 BER93_12160 BER93_12160 PF13742 BER93_12160 BER93_12175 PF04367 BER93_12175 BER93_12180 PF02592 BER93_12180 BER93_12190 PF02311 AraC-like ligand binding domain BER93_12195 PF05960 Bacterial protein of unknown function (DUF885) BER93_12200 PF02574 Homocysteine S-methyltransferase BER93_12205 PF00324 Amino acid permease BER93_12210 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) BER93_12215 PF01588 Putative tRNA binding domain BER93_12215 PF09334 tRNA synthetases class I (M) BER93_12220 PF12710 haloacid dehalogenase-like hydrolase BER93_12225 PF04060 Putative Fe-S cluster BER93_12225 PF14697 4Fe-4S dicluster domain BER93_12240 PF04542 Sigma-70 region 2 BER93_12240 PF08281 Sigma-70, region 4 BER93_12245 PF10099 BER93_12245 BER93_12250 PF00487 BER93_12250 BER93_12255 PF13450 NAD(P)-binding Rossmann-like domain BER93_12260 PF07103 BER93_12260 BER93_12265 PF02353 Mycolic acid cyclopropane synthetase BER93_12270 PF11086 BER93_12270 BER93_12275 PF06966 BER93_12275 BER93_12280 PF02353 Mycolic acid cyclopropane synthetase BER93_12285 PF01042 Endoribonuclease L-PSP BER93_12295 PF03706 BER93_12295 BER93_12295 PF09924 Uncharacterized conserved protein (DUF2156) BER93_12300 PF06057 Bacterial virulence protein (VirJ) BER93_12305 PF09791 BER93_12305 BER93_12315 PF01609 Transposase DDE domain BER93_12315 PF05598 BER93_12315 BER93_12325 PF09537 Domain of unknown function (DUF2383) BER93_12330 PF07690 Major Facilitator Superfamily BER93_12335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER93_12340 PF03831 PhnA protein BER93_12345 PF01609 Transposase DDE domain BER93_12345 PF13340 BER93_12345 BER93_12350 PF01545 Cation efflux family BER93_12360 PF06723 MreB/Mbl protein BER93_12375 PF01272 Transcription elongation factor, GreA/GreB, C-term BER93_12375 PF03449 Transcription elongation factor, N-terminal BER93_12380 PF01609 Transposase DDE domain BER93_12380 PF13340 BER93_12380 BER93_12390 PF00919 Uncharacterized protein family UPF0004 BER93_12390 PF04055 Radical SAM superfamily BER93_12405 PF01738 Dienelactone hydrolase family BER93_12410 PF01230 HIT domain BER93_12415 PF00692 dUTPase BER93_12420 PF10609 ParA/MinD ATPase like BER93_12425 PF00593 TonB dependent receptor BER93_12425 PF07715 TonB-dependent Receptor Plug Domain BER93_12425 PF13620 Carboxypeptidase regulatory-like domain BER93_12430 PF01593 Flavin containing amine oxidoreductase BER93_12435 PF01431 Peptidase family M13 BER93_12435 PF05649 Peptidase family M13 BER93_12440 PF01431 Peptidase family M13 BER93_12440 PF05649 Peptidase family M13 BER93_12445 PF01694 Rhomboid family BER93_12455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_12455 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_12460 PF01266 FAD dependent oxidoreductase BER93_12465 PF04235 BER93_12465 BER93_12470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BER93_12475 PF00877 NlpC/P60 family BER93_12480 PF00877 NlpC/P60 family BER93_12485 PF03061 Thioesterase superfamily BER93_12490 PF01527 Transposase BER93_12495 PF00665 Integrase core domain BER93_12495 PF13276 BER93_12495 BER93_12505 PF01609 Transposase DDE domain BER93_12505 PF05598 BER93_12505 BER93_12515 PF01609 Transposase DDE domain BER93_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_12530 PF03466 LysR substrate binding domain BER93_12535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER93_12535 PF02403 Seryl-tRNA synthetase N-terminal domain BER93_12540 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_12545 PF03544 Gram-negative bacterial TonB protein C-terminal BER93_12550 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BER93_12555 PF00800 Prephenate dehydratase BER93_12555 PF01817 Chorismate mutase type II BER93_12555 PF01842 ACT domain BER93_12560 PF00266 Aminotransferase class-V BER93_12565 PF00174 Oxidoreductase molybdopterin binding domain BER93_12570 PF00356 Bacterial regulatory proteins, lacI family BER93_12570 PF13377 Periplasmic binding protein-like domain BER93_12575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BER93_12575 PF00381 PTS HPr component phosphorylation site BER93_12575 PF00391 PEP-utilising enzyme, mobile domain BER93_12575 PF02896 PEP-utilising enzyme, TIM barrel domain BER93_12575 PF05524 PEP-utilising enzyme, N-terminal BER93_12580 PF00294 pfkB family carbohydrate kinase BER93_12585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BER93_12590 PF04966 Carbohydrate-selective porin, OprB family BER93_12595 PF02355 Protein export membrane protein BER93_12595 PF07549 SecD/SecF GG Motif BER93_12600 PF02355 Protein export membrane protein BER93_12600 PF07549 SecD/SecF GG Motif BER93_12600 PF13721 SecD export protein N-terminal TM region BER93_12605 PF02699 Preprotein translocase subunit BER93_12610 PF01702 Queuine tRNA-ribosyltransferase BER93_12615 PF02547 Queuosine biosynthesis protein BER93_12620 PF01037 AsnC family BER93_12620 PF13412 Winged helix-turn-helix DNA-binding BER93_12625 PF00202 Aminotransferase class-III BER93_12630 PF04488 Glycosyltransferase sugar-binding region containing DXD motif BER93_12640 PF14681 Uracil phosphoribosyltransferase BER93_12645 PF13340 BER93_12645 BER93_12650 PF01609 Transposase DDE domain BER93_12655 PF00759 Glycosyl hydrolase family 9 BER93_12655 PF02927 N-terminal ig-like domain of cellulase BER93_12660 PF01019 Gamma-glutamyltranspeptidase BER93_12665 PF00037 4Fe-4S binding domain BER93_12675 PF01467 Cytidylyltransferase BER93_12680 PF03602 Conserved hypothetical protein 95 BER93_12685 PF00183 Hsp90 protein BER93_12685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_12695 PF06850 BER93_12695 BER93_12710 PF01609 Transposase DDE domain BER93_12710 PF05598 BER93_12710 BER93_12715 PF00665 Integrase core domain BER93_12725 PF00375 Sodium:dicarboxylate symporter family BER93_12730 PF00245 Alkaline phosphatase BER93_12735 PF01171 PP-loop family BER93_12735 PF09179 TilS substrate binding domain BER93_12735 PF11734 TilS substrate C-terminal domain BER93_12740 PF02609 Exonuclease VII small subunit BER93_12745 PF00348 Polyprenyl synthetase BER93_12755 PF09685 BER93_12755 BER93_12760 PF01523 Putative modulator of DNA gyrase BER93_12765 PF04751 Protein of unknown function (DUF615) BER93_12770 PF01523 Putative modulator of DNA gyrase BER93_12780 PF13116 BER93_12780 BER93_12780 PF13502 BER93_12780 BER93_12785 PF10150 Ribonuclease E/G family BER93_12790 PF02545 Maf-like protein BER93_12795 PF04402 Protein of unknown function (DUF541) BER93_12800 PF02590 Predicted SPOUT methyltransferase BER93_12805 PF01527 Transposase BER93_12825 PF02410 Oligomerisation domain BER93_12830 PF01467 Cytidylyltransferase BER93_12835 PF06144 DNA polymerase III, delta subunit BER93_12840 PF04390 Lipopolysaccharide-assembly BER93_12845 PF00133 tRNA synthetases class I (I, L, M and V) BER93_12845 PF08264 Anticodon-binding domain of tRNA BER93_12845 PF13603 Leucyl-tRNA synthetase, Domain 2 BER93_12850 PF06197 BER93_12850 BER93_12855 PF00085 Thioredoxin BER93_12855 PF14559 Tetratricopeptide repeat BER93_12855 PF14561 Tetratricopeptide repeat BER93_12880 PF01464 Transglycosylase SLT domain BER93_12890 PF00263 BER93_12890 BER93_12890 PF03958 Bacterial type II/III secretion system short domain BER93_12895 PF01311 BER93_12895 BER93_12900 PF09486 BER93_12900 BER93_12905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_12905 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER93_12910 PF02108 BER93_12910 BER93_12915 PF09502 BER93_12915 BER93_12920 PF01514 Secretory protein of YscJ/FliF family BER93_12925 PF09487 BER93_12925 BER93_12930 PF09613 BER93_12930 BER93_12935 PF01312 FlhB HrpN YscU SpaS Family BER93_12940 PF00771 FHIPEP family BER93_12945 PF09483 BER93_12945 BER93_12950 PF01052 Surface presentation of antigens (SPOA) BER93_12955 PF00813 BER93_12955 BER93_12960 PF01313 BER93_12960 BER93_12985 PF05932 Tir chaperone protein (CesT) family BER93_12990 PF03211 Pectate lyase BER93_13015 PF04070 BER93_13015 BER93_13020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BER93_13035 PF05960 Bacterial protein of unknown function (DUF885) BER93_13040 PF01609 Transposase DDE domain BER93_13050 PF00005 ABC transporter BER93_13050 PF00664 ABC transporter transmembrane region BER93_13060 PF00999 Sodium/hydrogen exchanger family BER93_13065 PF11954 BER93_13065 BER93_13070 PF01904 Protein of unknown function DUF72 BER93_13075 PF00892 EamA-like transporter family BER93_13085 PF00849 RNA pseudouridylate synthase BER93_13085 PF01479 S4 domain BER93_13095 PF00563 EAL domain BER93_13095 PF00990 GGDEF domain BER93_13095 PF08447 PAS fold BER93_13100 PF00270 DEAD/DEAH box helicase BER93_13100 PF00271 Helicase conserved C-terminal domain BER93_13100 PF03880 DbpA RNA binding domain BER93_13110 PF13275 S4 domain BER93_13125 PF01124 MAPEG family BER93_13130 PF13211 BER93_13130 BER93_13145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BER93_13145 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BER93_13155 PF03203 BER93_13155 BER93_13160 PF00593 TonB dependent receptor BER93_13160 PF07715 TonB-dependent Receptor Plug Domain BER93_13170 PF00037 4Fe-4S binding domain BER93_13170 PF00384 Molybdopterin oxidoreductase BER93_13170 PF01568 Molydopterin dinucleotide binding domain BER93_13170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BER93_13170 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BER93_13170 PF13510 2Fe-2S iron-sulfur cluster binding domain BER93_13180 PF00082 Subtilase family BER93_13180 PF01483 Proprotein convertase P-domain BER93_13205 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_13215 PF01475 Ferric uptake regulator family BER93_13220 PF00749 tRNA synthetases class I (E and Q), catalytic domain BER93_13225 PF12275 BER93_13225 BER93_13245 PF00112 Papain family cysteine protease BER93_13250 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ BER93_13255 PF13302 Acetyltransferase (GNAT) domain BER93_13260 PF00270 DEAD/DEAH box helicase BER93_13260 PF00271 Helicase conserved C-terminal domain BER93_13260 PF02559 CarD-like/TRCF domain BER93_13260 PF03461 TRCF domain BER93_13265 PF00488 MutS domain V BER93_13265 PF01624 MutS domain I BER93_13265 PF05188 MutS domain II BER93_13265 PF05190 MutS family domain IV BER93_13265 PF05192 MutS domain III BER93_13270 PF00141 Peroxidase BER93_13280 PF01609 Transposase DDE domain BER93_13285 PF01527 Transposase BER93_13305 PF00300 Histidine phosphatase superfamily (branch 1) BER93_13340 PF02554 BER93_13340 BER93_13340 PF13722 BER93_13340 BER93_13345 PF04328 BER93_13345 BER93_13350 PF13419 Haloacid dehalogenase-like hydrolase BER93_13355 PF05684 BER93_13355 BER93_13365 PF12804 MobA-like NTP transferase domain BER93_13370 PF02625 XdhC and CoxI family BER93_13370 PF13478 XdhC Rossmann domain BER93_13375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER93_13380 PF00990 GGDEF domain BER93_13380 PF02743 Cache domain BER93_13385 PF00436 Single-strand binding protein family BER93_13395 PF00348 Polyprenyl synthetase BER93_13400 PF01738 Dienelactone hydrolase family BER93_13405 PF02875 Mur ligase family, glutamate ligase domain BER93_13405 PF08245 Mur ligase middle domain BER93_13420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BER93_13420 PF00696 Amino acid kinase family BER93_13420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER93_13430 PF02567 Phenazine biosynthesis-like protein BER93_13435 PF05433 BER93_13435 BER93_13440 PF02566 OsmC-like protein BER93_13445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BER93_13445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BER93_13450 PF03652 Uncharacterised protein family (UPF0081) BER93_13455 PF02622 Uncharacterized ACR, COG1678 BER93_13465 PF03352 Methyladenine glycosylase BER93_13480 PF00437 Type II/IV secretion system protein BER93_13485 PF00437 Type II/IV secretion system protein BER93_13490 PF01168 Alanine racemase, N-terminal domain BER93_13495 PF03807 NADP oxidoreductase coenzyme F420-dependent BER93_13495 PF14748 Pyrroline-5-carboxylate reductase dimerisation BER93_13500 PF00216 Bacterial DNA-binding protein BER93_13510 PF12977 Domain of Unknown Function with PDB structure (DUF3861) BER93_13515 PF07273 Protein of unknown function (DUF1439) BER93_13520 PF00856 SET domain BER93_13525 PF02082 Transcriptional regulator BER93_13530 PF01458 Uncharacterized protein family (UPF0051) BER93_13535 PF00005 ABC transporter BER93_13540 PF01458 Uncharacterized protein family (UPF0051) BER93_13545 PF00266 Aminotransferase class-V BER93_13550 PF13673 Acetyltransferase (GNAT) domain BER93_13555 PF00355 Rieske [2Fe-2S] domain BER93_13560 PF00593 TonB dependent receptor BER93_13560 PF07715 TonB-dependent Receptor Plug Domain BER93_13565 PF13640 2OG-Fe(II) oxygenase superfamily BER93_13570 PF08238 Sel1 repeat BER93_13575 PF01527 Transposase BER93_13590 PF05962 HutD BER93_13595 PF12836 Helix-hairpin-helix motif BER93_13600 PF01546 Peptidase family M20/M25/M40 BER93_13600 PF07687 Peptidase dimerisation domain BER93_13605 PF04226 BER93_13605 BER93_13610 PF01636 Phosphotransferase enzyme family BER93_13615 PF00483 Nucleotidyl transferase BER93_13625 PF01695 IstB-like ATP binding protein BER93_13630 PF01594 BER93_13630 BER93_13635 PF09839 BER93_13635 BER93_13640 PF00586 AIR synthase related protein, N-terminal domain BER93_13640 PF02769 AIR synthase related protein, C-terminal domain BER93_13645 PF00551 Formyl transferase BER93_13650 PF11306 Protein of unknown function (DUF3108) BER93_13655 PF11306 Protein of unknown function (DUF3108) BER93_13670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BER93_13675 PF01722 BolA-like protein BER93_13680 PF00571 CBS domain BER93_13680 PF01380 SIS domain BER93_13685 PF08282 haloacid dehalogenase-like hydrolase BER93_13690 PF06835 Lipopolysaccharide-assembly, LptC-related BER93_13695 PF03968 OstA-like protein BER93_13700 PF00005 ABC transporter BER93_13700 PF12399 Branched-chain amino acid ATP-binding cassette transporter BER93_13705 PF00309 BER93_13705 BER93_13705 PF04552 Sigma-54, DNA binding domain BER93_13705 PF04963 Sigma-54 factor, core binding domain BER93_13710 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BER93_13715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BER93_13720 PF02603 HPr Serine kinase N terminus BER93_13720 PF07475 HPr Serine kinase C-terminal domain BER93_13725 PF03668 BER93_13725 BER93_13730 PF03610 PTS system fructose IIA component BER93_13735 PF00381 PTS HPr component phosphorylation site BER93_13740 PF00391 PEP-utilising enzyme, mobile domain BER93_13740 PF02896 PEP-utilising enzyme, TIM barrel domain BER93_13740 PF05524 PEP-utilising enzyme, N-terminal BER93_13745 PF00571 CBS domain BER93_13745 PF01769 Divalent cation transporter BER93_13745 PF03448 MgtE intracellular N domain BER93_13750 PF01527 Transposase BER93_13770 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) BER93_13775 PF02534 Type IV secretory system Conjugative DNA transfer BER93_13780 PF02685 Glucokinase BER93_13785 PF00593 TonB dependent receptor BER93_13785 PF07715 TonB-dependent Receptor Plug Domain BER93_13790 PF01120 Alpha-L-fucosidase BER93_13790 PF16757 BER93_13790 BER93_13795 PF00704 Glycosyl hydrolases family 18 BER93_13800 PF00728 Glycosyl hydrolase family 20, catalytic domain BER93_13800 PF02838 Glycosyl hydrolase family 20, domain 2 BER93_13800 PF13290 BER93_13800 BER93_13805 PF00703 Glycosyl hydrolases family 2 BER93_13810 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_13810 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER93_13810 PF07691 PA14 domain BER93_13810 PF14310 Fibronectin type III-like domain BER93_13820 PF01527 Transposase BER93_13830 PF13583 Metallo-peptidase family M12B Reprolysin-like BER93_13835 PF01609 Transposase DDE domain BER93_13840 PF01609 Transposase DDE domain BER93_13840 PF05598 BER93_13840 BER93_13850 PF00665 Integrase core domain BER93_13850 PF13276 BER93_13850 BER93_13855 PF01527 Transposase BER93_13870 PF01433 Peptidase family M1 BER93_13870 PF11838 ERAP1-like C-terminal domain BER93_13875 PF00709 Adenylosuccinate synthetase BER93_13880 PF09838 BER93_13880 BER93_13885 PF01145 SPFH domain / Band 7 family BER93_13890 PF01145 SPFH domain / Band 7 family BER93_13895 PF00072 Response regulator receiver domain BER93_13900 PF00226 DnaJ domain BER93_13900 PF01556 DnaJ C terminal domain BER93_13905 PF00011 Hsp20/alpha crystallin family BER93_13910 PF08534 Redoxin BER93_13915 PF00210 Ferritin-like domain BER93_13935 PF01609 Transposase DDE domain BER93_13935 PF13340 BER93_13935 BER93_13940 PF13683 BER93_13940 BER93_13945 PF01609 Transposase DDE domain BER93_13950 PF01156 Inosine-uridine preferring nucleoside hydrolase BER93_13955 PF00593 TonB dependent receptor BER93_13955 PF07715 TonB-dependent Receptor Plug Domain BER93_13960 PF04303 PrpF protein BER93_13965 PF00330 Aconitase family (aconitate hydratase) BER93_13965 PF00694 Aconitase C-terminal domain BER93_13970 PF00285 Citrate synthase BER93_13975 PF13714 Phosphoenolpyruvate phosphomutase BER93_13980 PF00158 Sigma-54 interaction domain BER93_13980 PF02954 Bacterial regulatory protein, Fis family BER93_13980 PF06506 Propionate catabolism activator BER93_13995 PF01609 Transposase DDE domain BER93_13995 PF05598 BER93_13995 BER93_14010 PF07238 PilZ domain BER93_14015 PF13177 DNA polymerase III, delta subunit BER93_14020 PF02618 YceG-like family BER93_14025 PF00425 chorismate binding enzyme BER93_14025 PF04715 Anthranilate synthase component I, N terminal region BER93_14030 PF00109 Beta-ketoacyl synthase, N-terminal domain BER93_14030 PF02801 Beta-ketoacyl synthase, C-terminal domain BER93_14035 PF00550 Phosphopantetheine attachment site BER93_14040 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_14045 PF00698 Acyl transferase domain BER93_14050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BER93_14050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BER93_14055 PF01783 Ribosomal L32p protein family BER93_14060 PF02620 BER93_14060 BER93_14065 PF02545 Maf-like protein BER93_14075 PF00535 Glycosyl transferase family 2 BER93_14080 PF13231 BER93_14080 BER93_14085 PF07726 ATPase family associated with various cellular activities (AAA) BER93_14090 PF01882 BER93_14090 BER93_14095 PF01841 Transglutaminase-like superfamily BER93_14095 PF11992 BER93_14095 BER93_14100 PF03843 BER93_14100 BER93_14105 PF01230 HIT domain BER93_14110 PF02132 RecR protein BER93_14110 PF13662 Toprim domain BER93_14115 PF02575 YbaB/EbfC DNA-binding family BER93_14120 PF12169 DNA polymerase III subunits gamma and tau domain III BER93_14120 PF12170 DNA polymerase III tau subunit V interacting with alpha BER93_14120 PF13177 DNA polymerase III, delta subunit BER93_14135 PF02391 MoaE protein BER93_14140 PF02597 ThiS family BER93_14145 PF01967 MoaC family BER93_14150 PF04055 Radical SAM superfamily BER93_14150 PF06463 Molybdenum Cofactor Synthesis C BER93_14150 PF13353 4Fe-4S single cluster domain BER93_14155 PF12706 Beta-lactamase superfamily domain BER93_14160 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family BER93_14165 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BER93_14180 PF13672 Protein phosphatase 2C BER93_14185 PF00929 Exonuclease BER93_14190 PF00075 RNase H BER93_14200 PF00753 Metallo-beta-lactamase superfamily BER93_14200 PF16123 BER93_14200 BER93_14205 PF01464 Transglycosylase SLT domain BER93_14205 PF01476 LysM domain BER93_14215 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BER93_14215 PF06827 Zinc finger found in FPG and IleRS BER93_14215 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BER93_14220 PF00326 Prolyl oligopeptidase family BER93_14220 PF07676 WD40-like Beta Propeller Repeat BER93_14225 PF03169 BER93_14225 BER93_14230 PF12582 BER93_14230 BER93_14235 PF08668 HDOD domain BER93_14240 PF01609 Transposase DDE domain BER93_14255 PF01336 OB-fold nucleic acid binding domain BER93_14255 PF02811 PHP domain BER93_14255 PF07733 Bacterial DNA polymerase III alpha subunit BER93_14255 PF14579 Helix-hairpin-helix motif BER93_14260 PF00817 impB/mucB/samB family BER93_14270 PF00717 Peptidase S24-like BER93_14270 PF01726 LexA DNA binding domain BER93_14280 PF01609 Transposase DDE domain BER93_14305 PF00111 2Fe-2S iron-sulfur cluster binding domain BER93_14305 PF01799 [2Fe-2S] binding domain BER93_14310 PF00941 FAD binding domain in molybdopterin dehydrogenase BER93_14310 PF03450 CO dehydrogenase flavoprotein C-terminal domain BER93_14315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BER93_14315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BER93_14320 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_14360 PF01609 Transposase DDE domain BER93_14360 PF13340 BER93_14360 BER93_14365 PF01609 Transposase DDE domain BER93_14365 PF05598 BER93_14365 BER93_14390 PF05697 Bacterial trigger factor protein (TF) BER93_14390 PF05698 Bacterial trigger factor protein (TF) C-terminus BER93_14395 PF00574 Clp protease BER93_14400 PF06689 ClpX C4-type zinc finger BER93_14400 PF07724 AAA domain (Cdc48 subfamily) BER93_14400 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_14405 PF00004 ATPase family associated with various cellular activities (AAA) BER93_14405 PF02190 ATP-dependent protease La (LON) domain BER93_14405 PF05362 Lon protease (S16) C-terminal proteolytic domain BER93_14410 PF00216 Bacterial DNA-binding protein BER93_14430 PF13145 PPIC-type PPIASE domain BER93_14430 PF13616 PPIC-type PPIASE domain BER93_14430 PF13623 BER93_14430 BER93_14455 PF04055 Radical SAM superfamily BER93_14455 PF13394 4Fe-4S single cluster domain BER93_14460 PF13525 Outer membrane lipoprotein BER93_14460 PF16331 BER93_14460 BER93_14465 PF00691 OmpA family BER93_14470 PF04052 TolB amino-terminal domain BER93_14470 PF07676 WD40-like Beta Propeller Repeat BER93_14475 PF13103 TonB C terminal BER93_14480 PF02472 Biopolymer transport protein ExbD/TolR BER93_14485 PF01618 BER93_14485 BER93_14490 PF03061 Thioesterase superfamily BER93_14495 PF05491 Holliday junction DNA helicase ruvB C-terminus BER93_14495 PF05496 Holliday junction DNA helicase ruvB N-terminus BER93_14500 PF02705 BER93_14500 BER93_14505 PF01330 RuvA N terminal domain BER93_14505 PF07499 RuvA, C-terminal domain BER93_14505 PF14520 Helix-hairpin-helix domain BER93_14510 PF02075 Crossover junction endodeoxyribonuclease RuvC BER93_14515 PF01709 Transcriptional regulator BER93_14525 PF00583 Acetyltransferase (GNAT) family BER93_14530 PF00152 tRNA synthetases class II (D, K and N) BER93_14530 PF01336 OB-fold nucleic acid binding domain BER93_14530 PF02938 GAD domain BER93_14535 PF11218 BER93_14535 BER93_14545 PF01471 Putative peptidoglycan binding domain BER93_14545 PF13406 Transglycosylase SLT domain BER93_14550 PF00005 ABC transporter BER93_14550 PF12848 ABC transporter BER93_14550 PF16326 BER93_14550 BER93_14555 PF00593 TonB dependent receptor BER93_14555 PF07715 TonB-dependent Receptor Plug Domain BER93_14560 PF01609 Transposase DDE domain BER93_14570 PF00593 TonB dependent receptor BER93_14570 PF07715 TonB-dependent Receptor Plug Domain BER93_14575 PF00593 TonB dependent receptor BER93_14575 PF07715 TonB-dependent Receptor Plug Domain BER93_14580 PF00999 Sodium/hydrogen exchanger family BER93_14580 PF02254 TrkA-N domain BER93_14590 PF01609 Transposase DDE domain BER93_14590 PF05598 BER93_14590 BER93_14600 PF01244 Membrane dipeptidase (Peptidase family M19) BER93_14610 PF00324 Amino acid permease BER93_14615 PF01609 Transposase DDE domain BER93_14615 PF05598 BER93_14615 BER93_14620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BER93_14620 PF12729 BER93_14620 BER93_14630 PF00561 alpha/beta hydrolase fold BER93_14635 PF00196 Bacterial regulatory proteins, luxR family BER93_14635 PF03472 Autoinducer binding domain BER93_14640 PF13520 Amino acid permease BER93_14645 PF13365 Trypsin-like peptidase domain BER93_14655 PF01609 Transposase DDE domain BER93_14670 PF03738 Glutathionylspermidine synthase preATP-grasp BER93_14675 PF06693 BER93_14675 BER93_14680 PF03994 BER93_14680 BER93_14685 PF10679 BER93_14685 BER93_14695 PF04012 BER93_14695 BER93_14700 PF09938 BER93_14700 BER93_14710 PF01243 Pyridoxamine 5'-phosphate oxidase BER93_14710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BER93_14715 PF01202 Shikimate kinase BER93_14720 PF01761 3-dehydroquinate synthase BER93_14725 PF05406 WGR domain BER93_14730 PF01208 Uroporphyrinogen decarboxylase (URO-D) BER93_14735 PF07690 Major Facilitator Superfamily BER93_14740 PF01609 Transposase DDE domain BER93_14740 PF05598 BER93_14740 BER93_14745 PF00072 Response regulator receiver domain BER93_14745 PF00512 His Kinase A (phospho-acceptor) domain BER93_14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_14745 PF07494 Two component regulator propeller BER93_14745 PF07495 Y_Y_Y domain BER93_14750 PF00072 Response regulator receiver domain BER93_14750 PF00512 His Kinase A (phospho-acceptor) domain BER93_14750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_14750 PF07494 Two component regulator propeller BER93_14750 PF07495 Y_Y_Y domain BER93_14770 PF00072 Response regulator receiver domain BER93_14775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_14775 PF08448 PAS fold BER93_14805 PF12833 Helix-turn-helix domain BER93_14810 PF00486 Transcriptional regulatory protein, C terminal BER93_14815 PF05656 BER93_14815 BER93_14820 PF13481 AAA domain BER93_14820 PF13541 Subunit ChlI of Mg-chelatase BER93_14825 PF05299 M61 glycyl aminopeptidase BER93_14825 PF07720 Tetratricopeptide repeat BER93_14830 PF03626 BER93_14830 BER93_14835 PF00510 Cytochrome c oxidase subunit III BER93_14840 PF00115 Cytochrome C and Quinol oxidase polypeptide I BER93_14845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BER93_14845 PF06481 COX Aromatic Rich Motif BER93_14855 PF02401 LytB protein BER93_14860 PF01252 BER93_14860 BER93_14865 PF00133 tRNA synthetases class I (I, L, M and V) BER93_14865 PF08264 Anticodon-binding domain of tRNA BER93_14870 PF01687 Riboflavin kinase BER93_14870 PF06574 FAD synthetase BER93_14875 PF03023 BER93_14875 BER93_14880 PF01649 Ribosomal protein S20 BER93_14885 PF01018 GTP1/OBG BER93_14885 PF01926 50S ribosome-binding GTPase BER93_14890 PF01016 Ribosomal L27 protein BER93_14895 PF00829 Ribosomal prokaryotic L21 protein BER93_14900 PF00005 ABC transporter BER93_14905 PF13279 Thioesterase-like superfamily BER93_14910 PF04314 Protein of unknown function (DUF461) BER93_14915 PF00378 Enoyl-CoA hydratase/isomerase family BER93_14920 PF13622 Thioesterase-like superfamily BER93_14925 PF09413 Domain of unknown function (DUF2007) BER93_14940 PF13202 EF hand BER93_14940 PF13499 EF-hand domain pair BER93_14945 PF04376 BER93_14945 BER93_14945 PF04377 BER93_14945 BER93_14950 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_14955 PF01609 Transposase DDE domain BER93_14955 PF05598 BER93_14955 BER93_14970 PF01527 Transposase BER93_14975 PF01370 NAD dependent epimerase/dehydratase family BER93_14975 PF02222 ATP-grasp domain BER93_14980 PF01145 SPFH domain / Band 7 family BER93_14995 PF01609 Transposase DDE domain BER93_15000 PF02557 D-alanyl-D-alanine carboxypeptidase BER93_15005 PF00730 HhH-GPD superfamily base excision DNA repair protein BER93_15010 PF04241 BER93_15010 BER93_15020 PF00072 Response regulator receiver domain BER93_15020 PF00196 Bacterial regulatory proteins, luxR family BER93_15025 PF07730 Histidine kinase BER93_15030 PF00583 Acetyltransferase (GNAT) family BER93_15035 PF03775 Septum formation inhibitor MinC, C-terminal domain BER93_15035 PF05209 Septum formation inhibitor MinC, N-terminal domain BER93_15040 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_15045 PF03776 Septum formation topological specificity factor MinE BER93_15055 PF00512 His Kinase A (phospho-acceptor) domain BER93_15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_15060 PF00072 Response regulator receiver domain BER93_15060 PF00486 Transcriptional regulatory protein, C terminal BER93_15070 PF01569 PAP2 superfamily BER93_15075 PF00884 Sulfatase BER93_15075 PF08019 BER93_15075 BER93_15095 PF02347 Glycine cleavage system P-protein BER93_15100 PF00199 Catalase BER93_15100 PF06628 Catalase-related immune-responsive BER93_15105 PF01609 Transposase DDE domain BER93_15105 PF13340 BER93_15105 BER93_15110 PF08448 PAS fold BER93_15110 PF12833 Helix-turn-helix domain BER93_15120 PF01609 Transposase DDE domain BER93_15140 PF01609 Transposase DDE domain BER93_15140 PF05598 BER93_15140 BER93_15150 PF03328 HpcH/HpaI aldolase/citrate lyase family BER93_15155 PF00593 TonB dependent receptor BER93_15155 PF07715 TonB-dependent Receptor Plug Domain BER93_15165 PF04183 IucA / IucC family BER93_15165 PF06276 Ferric iron reductase FhuF-like transporter BER93_15170 PF07690 Major Facilitator Superfamily BER93_15175 PF04183 IucA / IucC family BER93_15175 PF06276 Ferric iron reductase FhuF-like transporter BER93_15180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BER93_15180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BER93_15185 PF00593 TonB dependent receptor BER93_15185 PF07715 TonB-dependent Receptor Plug Domain BER93_15195 PF00004 ATPase family associated with various cellular activities (AAA) BER93_15195 PF02861 Clp amino terminal domain BER93_15195 PF07724 AAA domain (Cdc48 subfamily) BER93_15195 PF10431 C-terminal, D2-small domain, of ClpB protein BER93_15220 PF13503 BER93_15220 BER93_15245 PF13503 BER93_15245 BER93_15250 PF05954 Phage late control gene D protein (GPD) BER93_15250 PF10106 BER93_15250 BER93_15250 PF13296 BER93_15250 BER93_15255 PF00665 Integrase core domain BER93_15255 PF13276 BER93_15255 BER93_15260 PF01527 Transposase BER93_15280 PF01609 Transposase DDE domain BER93_15280 PF05598 BER93_15280 BER93_15310 PF12811 BER93_15310 BER93_15315 PF01609 Transposase DDE domain BER93_15315 PF05598 BER93_15315 BER93_15320 PF00180 Isocitrate/isopropylmalate dehydrogenase BER93_15325 PF02627 Carboxymuconolactone decarboxylase family BER93_15330 PF00462 Glutaredoxin BER93_15340 PF01435 Peptidase family M48 BER93_15345 PF00072 Response regulator receiver domain BER93_15345 PF00486 Transcriptional regulatory protein, C terminal BER93_15350 PF00512 His Kinase A (phospho-acceptor) domain BER93_15350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_15350 PF11808 BER93_15350 BER93_15355 PF02503 Polyphosphate kinase middle domain BER93_15355 PF13089 Polyphosphate kinase N-terminal domain BER93_15355 PF13090 Polyphosphate kinase C-terminal domain BER93_15360 PF02541 Ppx/GppA phosphatase family BER93_15370 PF01569 PAP2 superfamily BER93_15375 PF00149 Calcineurin-like phosphoesterase BER93_15385 PF13688 Metallo-peptidase family M12 BER93_15395 PF04305 BER93_15395 BER93_15400 PF13522 Glutamine amidotransferase domain BER93_15405 PF02674 BER93_15405 BER93_15410 PF05036 Sporulation related domain BER93_15415 PF02875 Mur ligase family, glutamate ligase domain BER93_15415 PF08245 Mur ligase middle domain BER93_15420 PF13855 Leucine rich repeat BER93_15435 PF01609 Transposase DDE domain BER93_15435 PF05598 BER93_15435 BER93_15440 PF06824 Protein of unknown function (DUF1237) BER93_15445 PF07971 Glycosyl hydrolase family 92 BER93_15450 PF01301 Glycosyl hydrolases family 35 BER93_15465 PF00069 Protein kinase domain BER93_15495 PF02384 N-6 DNA Methylase BER93_15495 PF12161 HsdM N-terminal domain BER93_15500 PF02498 BER93_15500 BER93_15510 PF01420 Type I restriction modification DNA specificity domain BER93_15515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BER93_15515 PF04851 Type III restriction enzyme, res subunit BER93_15520 PF01863 Protein of unknown function DUF45 BER93_15535 PF01527 Transposase BER93_15545 PF00583 Acetyltransferase (GNAT) family BER93_15555 PF01066 CDP-alcohol phosphatidyltransferase BER93_15560 PF13511 BER93_15560 BER93_15565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BER93_15565 PF03129 Anticodon binding domain BER93_15565 PF04073 Aminoacyl-tRNA editing domain BER93_15570 PF00816 H-NS histone family BER93_15575 PF06738 BER93_15575 BER93_15575 PF12821 BER93_15575 BER93_15580 PF02405 BER93_15580 BER93_15585 PF00005 ABC transporter BER93_15590 PF02470 BER93_15590 BER93_15595 PF03886 Protein of unknown function (DUF330) BER93_15605 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase BER93_15605 PF13450 NAD(P)-binding Rossmann-like domain BER93_15610 PF05045 BER93_15610 BER93_15615 PF01144 Coenzyme A transferase BER93_15620 PF01144 Coenzyme A transferase BER93_15625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER93_15625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER93_15625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER93_15625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER93_15630 PF00483 Nucleotidyl transferase BER93_15630 PF01050 Mannose-6-phosphate isomerase BER93_15635 PF04321 RmlD substrate binding domain BER93_15640 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BER93_15645 PF00483 Nucleotidyl transferase BER93_15650 PF16363 BER93_15650 BER93_15655 PF01012 Electron transfer flavoprotein domain BER93_15660 PF00766 Electron transfer flavoprotein FAD-binding domain BER93_15660 PF01012 Electron transfer flavoprotein domain BER93_15670 PF00535 Glycosyl transferase family 2 BER93_15675 PF04138 BER93_15675 BER93_15690 PF01370 NAD dependent epimerase/dehydratase family BER93_15695 PF16363 BER93_15695 BER93_15705 PF13692 Glycosyl transferases group 1 BER93_15710 PF00534 Glycosyl transferases group 1 BER93_15715 PF13847 Methyltransferase domain BER93_15720 PF00005 ABC transporter BER93_15720 PF14524 Wzt C-terminal domain BER93_15725 PF01061 BER93_15725 BER93_15730 PF00534 Glycosyl transferases group 1 BER93_15735 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_15740 PF00291 Pyridoxal-phosphate dependent enzyme BER93_15740 PF00571 CBS domain BER93_15745 PF04325 Protein of unknown function (DUF465) BER93_15755 PF14346 Domain of unknown function (DUF4398) BER93_15760 PF00437 Type II/IV secretion system protein BER93_15770 PF13410 Glutathione S-transferase, C-terminal domain BER93_15770 PF13417 Glutathione S-transferase, N-terminal domain BER93_15775 PF01557 Fumarylacetoacetate (FAA) hydrolase family BER93_15780 PF00270 DEAD/DEAH box helicase BER93_15780 PF00271 Helicase conserved C-terminal domain BER93_15785 PF01242 6-pyruvoyl tetrahydropterin synthase BER93_15795 PF13500 AAA domain BER93_15800 PF13185 GAF domain BER93_15805 PF04994 TfoX C-terminal domain BER93_15815 PF01609 Transposase DDE domain BER93_15815 PF05598 BER93_15815 BER93_15825 PF13419 Haloacid dehalogenase-like hydrolase BER93_15830 PF00817 impB/mucB/samB family BER93_15830 PF11798 IMS family HHH motif BER93_15830 PF11799 impB/mucB/samB family C-terminal domain BER93_15840 PF07977 FabA-like domain BER93_15845 PF00109 Beta-ketoacyl synthase, N-terminal domain BER93_15845 PF02801 Beta-ketoacyl synthase, C-terminal domain BER93_15855 PF01432 Peptidase family M3 BER93_15860 PF00291 Pyridoxal-phosphate dependent enzyme BER93_15870 PF00394 Multicopper oxidase BER93_15870 PF07731 Multicopper oxidase BER93_15870 PF07732 Multicopper oxidase BER93_15875 PF05275 BER93_15875 BER93_15880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BER93_15890 PF01380 SIS domain BER93_15890 PF13522 Glutamine amidotransferase domain BER93_15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_15915 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_15915 PF12804 MobA-like NTP transferase domain BER93_15915 PF14602 Hexapeptide repeat of succinyl-transferase BER93_15920 PF04138 BER93_15920 BER93_15925 PF01817 Chorismate mutase type II BER93_15930 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BER93_15930 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BER93_15935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_15935 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER93_15940 PF00231 ATP synthase BER93_15945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BER93_15945 PF00306 ATP synthase alpha/beta chain, C terminal domain BER93_15945 PF02874 ATP synthase alpha/beta family, beta-barrel domain BER93_15950 PF00213 ATP synthase delta (OSCP) subunit BER93_15955 PF00430 ATP synthase B/B' CF(0) BER93_15960 PF00137 ATP synthase subunit C BER93_15965 PF00119 ATP synthase A chain BER93_15980 PF00364 Biotin-requiring enzyme BER93_15980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BER93_15980 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_16000 PF03167 Uracil DNA glycosylase superfamily BER93_16005 PF03922 OmpW family BER93_16015 PF03180 NLPA lipoprotein BER93_16020 PF00528 Binding-protein-dependent transport system inner membrane component BER93_16025 PF00005 ABC transporter BER93_16025 PF09383 NIL domain BER93_16030 PF04461 Protein of unknown function (DUF520) BER93_16045 PF07209 BER93_16045 BER93_16060 PF01609 Transposase DDE domain BER93_16065 PF01609 Transposase DDE domain BER93_16075 PF00849 RNA pseudouridylate synthase BER93_16080 PF05175 Methyltransferase small domain BER93_16090 PF07995 Glucose / Sorbosone dehydrogenase BER93_16095 PF11607 Protein of unknown function (DUF3247) BER93_16100 PF00072 Response regulator receiver domain BER93_16100 PF00512 His Kinase A (phospho-acceptor) domain BER93_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_16100 PF08448 PAS fold BER93_16100 PF13188 PAS domain BER93_16115 PF11454 BER93_16115 BER93_16120 PF00842 Alanine racemase, C-terminal domain BER93_16120 PF01168 Alanine racemase, N-terminal domain BER93_16125 PF01266 FAD dependent oxidoreductase BER93_16140 PF01641 SelR domain BER93_16145 PF01618 BER93_16145 BER93_16150 PF00691 OmpA family BER93_16150 PF13677 BER93_16150 BER93_16160 PF13223 BER93_16160 BER93_16170 PF11730 BER93_16170 BER93_16180 PF01609 Transposase DDE domain BER93_16180 PF13340 BER93_16180 BER93_16185 PF01609 Transposase DDE domain BER93_16220 PF01743 Poly A polymerase head domain BER93_16220 PF01966 HD domain BER93_16220 PF12627 Probable RNA and SrmB- binding site of polymerase A BER93_16230 PF01464 Transglycosylase SLT domain BER93_16230 PF14718 Soluble lytic murein transglycosylase L domain BER93_16250 PF13683 BER93_16250 BER93_16300 PF01609 Transposase DDE domain BER93_16300 PF13340 BER93_16300 BER93_16305 PF01220 Dehydroquinase class II BER93_16310 PF00364 Biotin-requiring enzyme BER93_16320 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BER93_16320 PF02785 Biotin carboxylase C-terminal domain BER93_16320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER93_16325 PF06325 Ribosomal protein L11 methyltransferase (PrmA) BER93_16335 PF01381 Helix-turn-helix BER93_16340 PF11906 BER93_16340 BER93_16345 PF02954 Bacterial regulatory protein, Fis family BER93_16350 PF00818 BER93_16350 BER93_16355 PF01808 AICARFT/IMPCHase bienzyme BER93_16355 PF02142 MGS-like domain BER93_16360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BER93_16360 PF02843 Phosphoribosylglycinamide synthetase, C domain BER93_16360 PF02844 Phosphoribosylglycinamide synthetase, N domain BER93_16365 PF12805 BER93_16365 BER93_16365 PF13515 BER93_16365 BER93_16370 PF07690 Major Facilitator Superfamily BER93_16385 PF01553 Acyltransferase BER93_16385 PF07690 Major Facilitator Superfamily BER93_16390 PF04505 BER93_16390 BER93_16395 PF10825 BER93_16395 BER93_16405 PF00293 NUDIX domain BER93_16405 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BER93_16405 PF09297 NADH pyrophosphatase zinc ribbon domain BER93_16410 PF00589 Phage integrase family BER93_16415 PF01609 Transposase DDE domain BER93_16415 PF05598 BER93_16415 BER93_16425 PF01527 Transposase BER93_16430 PF00665 Integrase core domain BER93_16430 PF13276 BER93_16430 BER93_16460 PF01717 Cobalamin-independent synthase, Catalytic domain BER93_16460 PF08267 Cobalamin-independent synthase, N-terminal domain BER93_16465 PF07751 BER93_16465 BER93_16475 PF01638 HxlR-like helix-turn-helix BER93_16480 PF00920 Dehydratase family BER93_16485 PF00132 Bacterial transferase hexapeptide (six repeats) BER93_16500 PF01527 Transposase BER93_16505 PF00665 Integrase core domain BER93_16505 PF13276 BER93_16505 BER93_16515 PF01609 Transposase DDE domain BER93_16515 PF05598 BER93_16515 BER93_16520 PF00873 AcrB/AcrD/AcrF family BER93_16525 PF00873 AcrB/AcrD/AcrF family BER93_16535 PF00551 Formyl transferase BER93_16535 PF01842 ACT domain BER93_16540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BER93_16545 PF02146 Sir2 family BER93_16555 PF07690 Major Facilitator Superfamily BER93_16560 PF01026 TatD related DNase BER93_16565 PF07308 BER93_16565 BER93_16575 PF00271 Helicase conserved C-terminal domain BER93_16575 PF04408 Helicase associated domain (HA2) BER93_16575 PF08482 BER93_16575 BER93_16595 PF00849 RNA pseudouridylate synthase BER93_16605 PF00248 Aldo/keto reductase family BER93_16610 PF00107 Zinc-binding dehydrogenase BER93_16610 PF16884 BER93_16610 BER93_16615 PF00248 Aldo/keto reductase family BER93_16625 PF02566 OsmC-like protein BER93_16635 PF03969 AFG1-like ATPase BER93_16640 PF12146 Putative lysophospholipase BER93_16660 PF03203 BER93_16660 BER93_16665 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_16670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BER93_16675 PF11804 BER93_16675 BER93_16680 PF00440 Bacterial regulatory proteins, tetR family BER93_16685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BER93_16685 PF02770 Acyl-CoA dehydrogenase, middle domain BER93_16685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BER93_16690 PF01039 Carboxyl transferase domain BER93_16695 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BER93_16695 PF00364 Biotin-requiring enzyme BER93_16695 PF02785 Biotin carboxylase C-terminal domain BER93_16695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BER93_16705 PF01867 CRISPR associated protein Cas1 BER93_16715 PF09611 BER93_16715 BER93_16720 PF09614 BER93_16720 BER93_16725 PF09615 BER93_16725 BER93_16730 PF09618 CRISPR-associated protein (Cas_Csy4) BER93_16735 PF00665 Integrase core domain BER93_16745 PF01527 Transposase BER93_16755 PF00873 AcrB/AcrD/AcrF family BER93_16760 PF16576 BER93_16760 BER93_16765 PF00009 Elongation factor Tu GTP binding domain BER93_16765 PF01583 Adenylylsulphate kinase BER93_16770 PF01507 Phosphoadenosine phosphosulfate reductase family BER93_16775 PF00175 Oxidoreductase NAD-binding domain BER93_16775 PF00258 Flavodoxin BER93_16775 PF00667 FAD binding domain BER93_16780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BER93_16780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BER93_16785 PF01507 Phosphoadenosine phosphosulfate reductase family BER93_16790 PF03929 BER93_16790 BER93_16795 PF00593 TonB dependent receptor BER93_16795 PF07715 TonB-dependent Receptor Plug Domain BER93_16800 PF11162 BER93_16800 BER93_16805 PF01590 GAF domain BER93_16805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_16815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BER93_16815 PF03466 LysR substrate binding domain BER93_16820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BER93_16825 PF00291 Pyridoxal-phosphate dependent enzyme BER93_16835 PF00274 Fructose-bisphosphate aldolase class-I BER93_16840 PF00224 Pyruvate kinase, barrel domain BER93_16840 PF02887 Pyruvate kinase, alpha/beta domain BER93_16845 PF13419 Haloacid dehalogenase-like hydrolase BER93_16850 PF00162 Phosphoglycerate kinase BER93_16855 PF10101 BER93_16855 BER93_16875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_16875 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_16880 PF00266 Aminotransferase class-V BER93_16885 PF01507 Phosphoadenosine phosphosulfate reductase family BER93_16895 PF13182 BER93_16895 BER93_16905 PF01609 Transposase DDE domain BER93_16905 PF13340 BER93_16905 BER93_16910 PF12760 Transposase zinc-ribbon domain BER93_16910 PF12762 BER93_16910 BER93_16915 PF01527 Transposase BER93_16920 PF00665 Integrase core domain BER93_16920 PF13276 BER93_16920 BER93_16925 PF12762 BER93_16925 BER93_16930 PF01609 Transposase DDE domain BER93_16930 PF05598 BER93_16930 BER93_16945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BER93_16945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BER93_16950 PF03922 OmpW family BER93_16955 PF02265 S1/P1 Nuclease BER93_16960 PF00753 Metallo-beta-lactamase superfamily BER93_16965 PF13531 Bacterial extracellular solute-binding protein BER93_16970 PF00528 Binding-protein-dependent transport system inner membrane component BER93_16975 PF00005 ABC transporter BER93_16990 PF03965 Penicillinase repressor BER93_17000 PF01471 Putative peptidoglycan binding domain BER93_17000 PF03734 L,D-transpeptidase catalytic domain BER93_17005 PF01551 Peptidase family M23 BER93_17010 PF07715 TonB-dependent Receptor Plug Domain BER93_17015 PF00456 Transketolase, thiamine diphosphate binding domain BER93_17015 PF02779 Transketolase, pyrimidine binding domain BER93_17015 PF02780 Transketolase, C-terminal domain BER93_17020 PF00375 Sodium:dicarboxylate symporter family BER93_17025 PF13584 BER93_17025 BER93_17030 PF00515 Tetratricopeptide repeat BER93_17030 PF13519 von Willebrand factor type A domain BER93_17035 PF00092 von Willebrand factor type A domain BER93_17040 PF14316 BER93_17040 BER93_17045 PF01882 BER93_17045 BER93_17050 PF07726 ATPase family associated with various cellular activities (AAA) BER93_17075 PF01609 Transposase DDE domain BER93_17075 PF05598 BER93_17075 BER93_17090 PF00999 Sodium/hydrogen exchanger family BER93_17110 PF01609 Transposase DDE domain BER93_17115 PF02469 Fasciclin domain BER93_17120 PF03167 Uracil DNA glycosylase superfamily BER93_17120 PF13566 BER93_17120 BER93_17125 PF04055 Radical SAM superfamily BER93_17130 PF00248 Aldo/keto reductase family BER93_17135 PF00535 Glycosyl transferase family 2 BER93_17140 PF01431 Peptidase family M13 BER93_17140 PF05649 Peptidase family M13 BER93_17145 PF09995 BER93_17145 BER93_17155 PF13520 Amino acid permease BER93_17170 PF05974 Domain of unknown function (DUF892) BER93_17175 PF05067 Manganese containing catalase BER93_17190 PF01339 CheB methylesterase BER93_17190 PF01739 CheR methyltransferase, SAM binding domain BER93_17190 PF03705 CheR methyltransferase, all-alpha domain BER93_17190 PF07536 BER93_17190 BER93_17190 PF08447 PAS fold BER93_17190 PF13596 PAS domain BER93_17195 PF00072 Response regulator receiver domain BER93_17205 PF00072 Response regulator receiver domain BER93_17205 PF00158 Sigma-54 interaction domain BER93_17205 PF02954 Bacterial regulatory protein, Fis family BER93_17230 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_17235 PF16363 BER93_17235 BER93_17240 PF13692 Glycosyl transferases group 1 BER93_17245 PF03275 UDP-galactopyranose mutase BER93_17245 PF13450 NAD(P)-binding Rossmann-like domain BER93_17255 PF00005 ABC transporter BER93_17255 PF00664 ABC transporter transmembrane region BER93_17260 PF12244 BER93_17260 BER93_17265 PF13628 BER93_17265 BER93_17270 PF00107 Zinc-binding dehydrogenase BER93_17270 PF08240 Alcohol dehydrogenase GroES-like domain BER93_17270 PF13823 Alcohol dehydrogenase GroES-associated BER93_17280 PF03692 BER93_17280 BER93_17290 PF11828 BER93_17290 BER93_17295 PF05650 BER93_17295 BER93_17300 PF00691 OmpA family BER93_17305 PF11445 BER93_17305 BER93_17310 PF00593 TonB dependent receptor BER93_17310 PF07715 TonB-dependent Receptor Plug Domain BER93_17315 PF12040 BER93_17315 BER93_17320 PF12040 BER93_17320 BER93_17320 PF12679 BER93_17320 BER93_17325 PF00005 ABC transporter BER93_17355 PF00916 BER93_17355 BER93_17355 PF01740 STAS domain BER93_17380 PF01527 Transposase BER93_17395 PF13304 AAA domain BER93_17400 PF00456 Transketolase, thiamine diphosphate binding domain BER93_17410 PF01609 Transposase DDE domain BER93_17410 PF13340 BER93_17410 BER93_17420 PF00672 HAMP domain BER93_17420 PF02743 Cache domain BER93_17420 PF07228 Stage II sporulation protein E (SpoIIE) BER93_17425 PF13581 Histidine kinase-like ATPase domain BER93_17430 PF01740 STAS domain BER93_17440 PF07158 BER93_17440 BER93_17445 PF00698 Acyl transferase domain BER93_17450 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BER93_17455 PF10620 BER93_17455 BER93_17460 PF06833 Malonate decarboxylase gamma subunit (MdcE) BER93_17465 PF01039 Carboxyl transferase domain BER93_17470 PF06857 BER93_17470 BER93_17480 PF04954 Siderophore-interacting protein BER93_17480 PF08021 Siderophore-interacting FAD-binding domain BER93_17490 PF04264 YceI-like domain BER93_17495 PF00881 Nitroreductase family BER93_17500 PF06258 BER93_17500 BER93_17505 PF02592 BER93_17505 BER93_17510 PF03710 Glutamate-ammonia ligase adenylyltransferase BER93_17510 PF08335 GlnD PII-uridylyltransferase BER93_17520 PF08450 SMP-30/Gluconolaconase/LRE-like region BER93_17530 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BER93_17530 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BER93_17540 PF00793 DAHP synthetase I family BER93_17560 PF00118 TCP-1/cpn60 chaperonin family BER93_17565 PF00166 Chaperonin 10 Kd subunit BER93_17580 PF03091 CutA1 divalent ion tolerance protein BER93_17585 PF02683 BER93_17585 BER93_17585 PF11412 Disulphide bond corrector protein DsbC BER93_17585 PF13899 Thioredoxin-like BER93_17600 PF01609 Transposase DDE domain BER93_17600 PF05598 BER93_17600 BER93_17605 PF01609 Transposase DDE domain BER93_17605 PF13340 BER93_17605 BER93_17615 PF00665 Integrase core domain BER93_17615 PF13276 BER93_17615 BER93_17620 PF01527 Transposase BER93_17625 PF13460 NADH(P)-binding BER93_17630 PF00128 Alpha amylase, catalytic domain BER93_17630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_17635 PF11154 BER93_17635 BER93_17640 PF00128 Alpha amylase, catalytic domain BER93_17645 PF02446 4-alpha-glucanotransferase BER93_17650 PF00128 Alpha amylase, catalytic domain BER93_17650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_17650 PF11941 Domain of unknown function (DUF3459) BER93_17655 PF00128 Alpha amylase, catalytic domain BER93_17655 PF02806 Alpha amylase, C-terminal all-beta domain BER93_17655 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_17660 PF00534 Glycosyl transferases group 1 BER93_17660 PF08323 Starch synthase catalytic domain BER93_17665 PF00990 GGDEF domain BER93_17670 PF02638 BER93_17670 BER93_17675 PF05661 BER93_17675 BER93_17680 PF03109 BER93_17680 BER93_17685 PF00924 Mechanosensitive ion channel BER93_17685 PF12607 BER93_17685 BER93_17690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BER93_17700 PF01040 UbiA prenyltransferase family BER93_17705 PF00156 Phosphoribosyl transferase domain BER93_17710 PF04055 Radical SAM superfamily BER93_17710 PF06968 Biotin and Thiamin Synthesis associated domain BER93_17715 PF00155 Aminotransferase class I and II BER93_17725 PF12697 Alpha/beta hydrolase family BER93_17740 PF08241 Methyltransferase domain BER93_17745 PF05118 Aspartyl/Asparaginyl beta-hydroxylase BER93_17755 PF02698 DUF218 domain BER93_17760 PF00291 Pyridoxal-phosphate dependent enzyme BER93_17770 PF01134 Glucose inhibited division protein A BER93_17770 PF13932 GidA associated domain 3 BER93_17785 PF01163 RIO1 family BER93_17795 PF00455 BER93_17795 BER93_17795 PF08220 DeoR-like helix-turn-helix domain BER93_17800 PF01266 FAD dependent oxidoreductase BER93_17800 PF16901 BER93_17800 BER93_17805 PF00230 Major intrinsic protein BER93_17810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BER93_17810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BER93_17820 PF01527 Transposase BER93_17835 PF01432 Peptidase family M3 BER93_17845 PF01553 Acyltransferase BER93_17850 PF00472 RF-1 domain BER93_17855 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) BER93_17865 PF13899 Thioredoxin-like BER93_17880 PF03109 BER93_17880 BER93_17885 PF02036 SCP-2 sterol transfer family BER93_17895 PF07043 BER93_17895 BER93_17900 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BER93_17905 PF00501 AMP-binding enzyme BER93_17910 PF03692 BER93_17910 BER93_17915 PF00561 alpha/beta hydrolase fold BER93_17935 PF01521 Iron-sulphur cluster biosynthesis BER93_17940 PF04519 BER93_17940 BER93_17950 PF13548 BER93_17950 BER93_17955 PF00072 Response regulator receiver domain BER93_17955 PF00563 EAL domain BER93_17955 PF00990 GGDEF domain BER93_17960 PF00072 Response regulator receiver domain BER93_17960 PF00512 His Kinase A (phospho-acceptor) domain BER93_17960 PF01627 Hpt domain BER93_17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_17965 PF00210 Ferritin-like domain BER93_17970 PF04324 BFD-like [2Fe-2S] binding domain BER93_17975 PF00293 NUDIX domain BER93_17990 PF00380 Ribosomal protein S9/S16 BER93_17995 PF00572 Ribosomal protein L13 BER93_18000 PF03232 BER93_18000 BER93_18010 PF02675 S-adenosylmethionine decarboxylase BER93_18015 PF00027 Cyclic nucleotide-binding domain BER93_18015 PF00325 Bacterial regulatory proteins, crp family BER93_18020 PF12710 haloacid dehalogenase-like hydrolase BER93_18025 PF00218 Indole-3-glycerol phosphate synthase BER93_18030 PF00591 Glycosyl transferase family, a/b domain BER93_18030 PF02885 Glycosyl transferase family, helical bundle domain BER93_18040 PF00117 Glutamine amidotransferase class-I BER93_18060 PF00266 Aminotransferase class-V BER93_18065 PF01053 Cys/Met metabolism PLP-dependent enzyme BER93_18070 PF00487 BER93_18070 BER93_18075 PF07722 Peptidase C26 BER93_18080 PF01810 BER93_18080 BER93_18085 PF04204 Homoserine O-succinyltransferase BER93_18090 PF00120 Glutamine synthetase, catalytic domain BER93_18095 PF00425 chorismate binding enzyme BER93_18095 PF04715 Anthranilate synthase component I, N terminal region BER93_18100 PF00781 Diacylglycerol kinase catalytic domain BER93_18105 PF00583 Acetyltransferase (GNAT) family BER93_18110 PF00834 Ribulose-phosphate 3 epimerase family BER93_18115 PF13505 Outer membrane protein beta-barrel domain BER93_18120 PF00226 DnaJ domain BER93_18125 PF01259 SAICAR synthetase BER93_18135 PF01609 Transposase DDE domain BER93_18140 PF06127 BER93_18140 BER93_18150 PF01609 Transposase DDE domain BER93_18155 PF01370 NAD dependent epimerase/dehydratase family BER93_18160 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_18160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BER93_18160 PF04039 BER93_18160 BER93_18160 PF13244 BER93_18160 BER93_18165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BER93_18170 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BER93_18175 PF01899 BER93_18175 BER93_18180 PF04066 BER93_18180 BER93_18185 PF03334 BER93_18185 BER93_18190 PF01609 Transposase DDE domain BER93_18190 PF05598 BER93_18190 BER93_18195 PF13419 Haloacid dehalogenase-like hydrolase BER93_18200 PF13202 EF hand BER93_18205 PF13202 EF hand BER93_18215 PF14255 BER93_18215 BER93_18220 PF01427 D-ala-D-ala dipeptidase BER93_18225 PF01510 N-acetylmuramoyl-L-alanine amidase BER93_18230 PF00877 NlpC/P60 family BER93_18230 PF12913 SH3 domain of the SH3b1 type BER93_18230 PF12914 SH3 domain of SH3b2 type BER93_18235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BER93_18235 PF13378 Enolase C-terminal domain-like BER93_18245 PF13520 Amino acid permease BER93_18265 PF07995 Glucose / Sorbosone dehydrogenase BER93_18270 PF00933 Glycosyl hydrolase family 3 N terminal domain BER93_18270 PF01915 Glycosyl hydrolase family 3 C-terminal domain BER93_18270 PF14310 Fibronectin type III-like domain BER93_18275 PF02152 Dihydroneopterin aldolase BER93_18280 PF00814 Glycoprotease family BER93_18285 PF01165 Ribosomal protein S21 BER93_18290 PF09424 Yqey-like protein BER93_18295 PF03631 BER93_18295 BER93_18300 PF01807 CHC2 zinc finger BER93_18300 PF08275 DNA primase catalytic core, N-terminal domain BER93_18300 PF08278 DNA primase DnaG DnaB-binding BER93_18300 PF10410 DnaB-helicase binding domain of primase BER93_18300 PF13155 Toprim-like BER93_18305 PF13593 SBF-like CPA transporter family (DUF4137) BER93_18315 PF01040 UbiA prenyltransferase family BER93_18320 PF02628 BER93_18320 BER93_18330 PF02104 BER93_18330 BER93_18335 PF11137 BER93_18335 BER93_18340 PF00510 Cytochrome c oxidase subunit III BER93_18345 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BER93_18350 PF00115 Cytochrome C and Quinol oxidase polypeptide I BER93_18355 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BER93_18355 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BER93_18360 PF10003 BER93_18360 BER93_18365 PF00171 Aldehyde dehydrogenase family BER93_18365 PF01619 Proline dehydrogenase BER93_18365 PF14850 DNA-binding domain of Proline dehydrogenase BER93_18370 PF00579 tRNA synthetases class I (W and Y) BER93_18375 PF01551 Peptidase family M23 BER93_18375 PF04225 Opacity-associated protein A LysM-like domain BER93_18380 PF03702 Uncharacterised protein family (UPF0075) BER93_18390 PF07690 Major Facilitator Superfamily BER93_18400 PF03372 Endonuclease/Exonuclease/phosphatase family BER93_18405 PF00156 Phosphoribosyl transferase domain BER93_18415 PF13614 AAA domain BER93_18420 PF02195 ParB-like nuclease domain BER93_18435 PF01370 NAD dependent epimerase/dehydratase family BER93_18440 PF00535 Glycosyl transferase family 2 BER93_18445 PF07578 Lipid A Biosynthesis N-terminal domain BER93_18455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BER93_18455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BER93_18455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BER93_18455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BER93_18460 PF00692 dUTPase BER93_18465 PF02441 Flavoprotein BER93_18465 PF04127 DNA / pantothenate metabolism flavoprotein BER93_18470 PF04002 RadC-like JAB domain BER93_18475 PF00750 tRNA synthetases class I (R) BER93_18475 PF03485 Arginyl tRNA synthetase N terminal domain BER93_18475 PF05746 DALR anticodon binding domain BER93_18480 PF05036 Sporulation related domain BER93_18485 PF00106 short chain dehydrogenase BER93_18515 PF03033 Glycosyltransferase family 28 N-terminal domain BER93_18520 PF00501 AMP-binding enzyme BER93_18520 PF00550 Phosphopantetheine attachment site BER93_18520 PF00668 Condensation domain BER93_18520 PF00975 Thioesterase domain BER93_18520 PF13193 AMP-binding enzyme C-terminal domain BER93_18525 PF01609 Transposase DDE domain BER93_18525 PF05598 BER93_18525 BER93_18530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_18535 PF00072 Response regulator receiver domain BER93_18535 PF00486 Transcriptional regulatory protein, C terminal BER93_18545 PF01207 Dihydrouridine synthase (Dus) BER93_18550 PF01609 Transposase DDE domain BER93_18560 PF12796 Ankyrin repeats (3 copies) BER93_18565 PF00199 Catalase BER93_18565 PF06628 Catalase-related immune-responsive BER93_18570 PF13307 Helicase C-terminal domain BER93_18580 PF01488 Shikimate / quinate 5-dehydrogenase BER93_18580 PF08501 Shikimate dehydrogenase substrate binding domain BER93_18590 PF00175 Oxidoreductase NAD-binding domain BER93_18590 PF00258 Flavodoxin BER93_18590 PF03929 BER93_18590 BER93_18595 PF00490 Delta-aminolevulinic acid dehydratase BER93_18635 PF02673 BER93_18635 BER93_18640 PF00120 Glutamine synthetase, catalytic domain BER93_18640 PF03951 Glutamine synthetase, beta-Grasp domain BER93_18645 PF00543 Nitrogen regulatory protein P-II BER93_18650 PF00909 Ammonium Transporter Family BER93_18655 PF00512 His Kinase A (phospho-acceptor) domain BER93_18655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BER93_18655 PF08448 PAS fold BER93_18660 PF00072 Response regulator receiver domain BER93_18660 PF00158 Sigma-54 interaction domain BER93_18660 PF02954 Bacterial regulatory protein, Fis family BER93_18665 PF00080 Copper/zinc superoxide dismutase (SODC) BER93_18670 PF00080 Copper/zinc superoxide dismutase (SODC) BER93_18680 PF13340 BER93_18680 BER93_18685 PF13432 Tetratricopeptide repeat BER93_18700 PF01553 Acyltransferase BER93_18705 PF03061 Thioesterase superfamily BER93_18710 PF13091 PLD-like domain BER93_18715 PF04264 YceI-like domain BER93_18720 PF00300 Histidine phosphatase superfamily (branch 1) BER93_18725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_18735 PF03547 BER93_18735 BER93_18745 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BER93_18750 PF11625 Protein of unknown function (DUF3253) BER93_18755 PF10017 BER93_18755 BER93_18760 PF03781 Sulfatase-modifying factor enzyme 1 BER93_18760 PF12867 DinB superfamily BER93_18765 PF00266 Aminotransferase class-V BER93_18770 PF00528 Binding-protein-dependent transport system inner membrane component BER93_18770 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BER93_18775 PF00005 ABC transporter BER93_18780 PF13202 EF hand BER93_18785 PF00005 ABC transporter BER93_18790 PF01037 AsnC family BER93_18790 PF13404 AsnC-type helix-turn-helix domain BER93_18795 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BER93_18800 PF13561 Enoyl-(Acyl carrier protein) reductase BER93_18805 PF04962 KduI/IolB family BER93_18815 PF00356 Bacterial regulatory proteins, lacI family BER93_18815 PF13377 Periplasmic binding protein-like domain BER93_18840 PF07859 alpha/beta hydrolase fold BER93_18845 PF00135 Carboxylesterase family BER93_18850 PF00248 Aldo/keto reductase family BER93_18855 PF00128 Alpha amylase, catalytic domain BER93_18855 PF02806 Alpha amylase, C-terminal all-beta domain BER93_18855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BER93_18860 PF00128 Alpha amylase, catalytic domain BER93_18860 PF16657 BER93_18860 BER93_18865 PF00128 Alpha amylase, catalytic domain BER93_18865 PF11896 Domain of unknown function (DUF3416) BER93_18920 PF01609 Transposase DDE domain BER93_18925 PF13340 BER93_18925 BER93_18935 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_18945 PF00150 Cellulase (glycosyl hydrolase family 5) BER93_18950 PF00107 Zinc-binding dehydrogenase BER93_18950 PF08240 Alcohol dehydrogenase GroES-like domain BER93_18955 PF07992 Pyridine nucleotide-disulphide oxidoreductase BER93_18955 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BER93_18960 PF00310 Glutamine amidotransferases class-II BER93_18960 PF01493 GXGXG motif BER93_18960 PF01645 Conserved region in glutamate synthase BER93_18960 PF04898 Glutamate synthase central domain BER93_18965 PF11720 Peptidase inhibitor I78 family BER93_18975 PF02092 BER93_18975 BER93_18975 PF05746 DALR anticodon binding domain BER93_18980 PF02091 Glycyl-tRNA synthetase alpha subunit BER93_18985 PF00437 Type II/IV secretion system protein BER93_18985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BER93_18990 PF00117 Glutamine amidotransferase class-I BER93_19000 PF00902 Sec-independent protein translocase protein (TatC) BER93_19005 PF02416 mttA/Hcf106 family BER93_19010 PF02416 mttA/Hcf106 family BER93_19015 PF04366 BER93_19015 BER93_19020 PF00762 Ferrochelatase BER93_19025 PF00561 alpha/beta hydrolase fold BER93_19030 PF01863 Protein of unknown function DUF45 BER93_19035 PF04381 Putative exonuclease, RdgC BER93_19040 PF01171 PP-loop family BER93_19050 PF00356 Bacterial regulatory proteins, lacI family BER93_19050 PF13377 Periplasmic binding protein-like domain BER93_19060 PF07488 Glycosyl hydrolase family 67 middle domain BER93_19075 PF13333 BER93_19075 BER93_19080 PF00665 Integrase core domain BER93_19080 PF13276 BER93_19080 BER93_19085 PF01527 Transposase BER93_19090 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BER93_19100 PF01609 Transposase DDE domain BER93_19100 PF13340 BER93_19100 BER93_19110 PF01126 Heme oxygenase BER93_19125 PF01263 Aldose 1-epimerase BER93_19125 PF01471 Putative peptidoglycan binding domain BER93_19125 PF13406 Transglycosylase SLT domain BER93_19140 PF01925 BER93_19140 BER93_19150 PF09983 BER93_19150 BER93_19150 PF11795 BER93_19150 BER93_19165 PF13835 BER93_19165 BER93_19170 PF11855 BER93_19170 BER93_19175 PF01609 Transposase DDE domain BER93_19180 PF01227 GTP cyclohydrolase I BER93_19185 PF00083 Sugar (and other) transporter BER93_19205 PF05016 Plasmid stabilisation system protein BER93_19215 PF01609 Transposase DDE domain BER93_19215 PF05598 BER93_19215 BER93_19230 PF01381 Helix-turn-helix BER93_19235 PF05015 Plasmid maintenance system killer protein BER93_19240 PF13245 Part of AAA domain BER93_19240 PF13538 UvrD-like helicase C-terminal domain BER93_19245 PF00580 UvrD/REP helicase N-terminal domain BER93_19245 PF12705 PD-(D/E)XK nuclease superfamily BER93_19245 PF13361 UvrD-like helicase C-terminal domain BER93_19250 PF04257 Exodeoxyribonuclease V, gamma subunit BER93_19255 PF00005 ABC transporter BER93_19260 PF02405 BER93_19260 BER93_19265 PF02470 BER93_19265 BER93_19270 PF05494 Toluene tolerance, Ttg2 BER93_19275 PF13466 STAS domain BER93_19280 PF04333 BER93_19280 BER93_19290 PF00255 Glutathione peroxidase BER93_19300 PF02646 BER93_19300 BER93_19310 PF13520 Amino acid permease BER93_19320 PF00990 GGDEF domain BER93_19320 PF01590 GAF domain BER93_19320 PF08448 PAS fold BER93_19325 PF02595 Glycerate kinase family BER93_19340 PF10672 S-adenosylmethionine-dependent methyltransferase BER93_19345 PF03741 BER93_19345 BER93_19355 PF01527 Transposase BER93_19365 PF01926 50S ribosome-binding GTPase BER93_19365 PF10396 GTP-binding protein TrmE N-terminus BER93_19365 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE BER93_19370 PF02096 60Kd inner membrane protein BER93_19370 PF14849 YidC periplasmic domain BER93_19375 PF00825 Ribonuclease P BER93_19380 PF00468 Ribosomal protein L34 BER93_19400 PF02195 ParB-like nuclease domain BER93_19400 PF08535 KorB domain BER93_19405 PF13614 AAA domain BER93_19410 PF16509 BER93_19410 BER93_19415 PF07042 BER93_19415 BER93_19425 PF13154 BER93_19425 BER93_19425 PF13155 Toprim-like BER93_19440 PF04956 BER93_19440 BER93_19445 PF05101 BER93_19445 BER93_19450 PF03135 BER93_19450 BER93_19455 PF07996 Type IV secretion system proteins BER93_19465 PF04610 BER93_19465 BER93_19470 PF04335 VirB8 protein BER93_19475 PF03524 Conjugal transfer protein BER93_19480 PF03743 Bacterial conjugation TrbI-like protein BER93_19485 PF00437 Type II/IV secretion system protein BER93_19490 PF02534 Type IV secretory system Conjugative DNA transfer BER93_19500 PF01464 Transglycosylase SLT domain BER93_19505 PF12512 BER93_19505 BER93_19510 PF00239 Resolvase, N terminal domain BER93_19510 PF13384 Homeodomain-like domain BER93_19520 PF04221 RelB antitoxin BER93_19525 PF05016 Plasmid stabilisation system protein BER93_19550 PF03432 BER93_19550 BER93_19555 PF05713 BER93_19555 BER93_19570 PF05016 Plasmid stabilisation system protein BER93_19575 PF01402 Ribbon-helix-helix protein, copG family BER93_19585 PF00239 Resolvase, N terminal domain BER93_19585 PF13384 Homeodomain-like domain BER93_19590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BER93_19620 PF02534 Type IV secretory system Conjugative DNA transfer BER93_19640 PF04221 RelB antitoxin BER93_19650 PF00239 Resolvase, N terminal domain BER93_19650 PF13384 Homeodomain-like domain BER93_19660 PF12582 BER93_19660 BER93_19685 PF01850 PIN domain BER93_19700 PF00239 Resolvase, N terminal domain