BER93_00005	SSF48295	TrpR-like
BER93_00005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00010	SSF55979	DNA clamp
BER93_00020	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00025	SSF54211	Ribosomal protein S5 domain 2-like
BER93_00025	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_00025	SSF56719	Type II DNA topoisomerase
BER93_00040	SSF48452	TPR-like
BER93_00045	SSF74653	TolA/TonB C-terminal domain
BER93_00075	SSF63892	Pyridoxine 5'-phosphate synthase
BER93_00085	SSF56024	Phospholipase D/nuclease
BER93_00100	SSF56935	Porins
BER93_00105	SSF144091	Rhomboid-like
BER93_00115	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_00115	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
BER93_00120	SSF50156	PDZ domain-like
BER93_00120	SSF52096	ClpP/crotonase
BER93_00125	SSF51261	Duplicated hybrid motif
BER93_00130	SSF52025	PA domain
BER93_00130	SSF53187	Zn-dependent exopeptidases
BER93_00145	SSF55103	FAD-linked oxidases, C-terminal domain
BER93_00145	SSF56176	FAD-binding/transporter-associated domain-like
BER93_00165	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_00175	SSF52096	ClpP/crotonase
BER93_00200	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00215	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_00215	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_00220	SSF52141	Uracil-DNA glycosylase-like
BER93_00225	SSF52172	CheY-like
BER93_00235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00245	SSF52833	Thioredoxin-like
BER93_00250	SSF50249	Nucleic acid-binding proteins
BER93_00250	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00250	SSF68912	Rho N-terminal domain-like
BER93_00260	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
BER93_00280	SSF54106	LysM domain
BER93_00285	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
BER93_00295	SSF111369	HlyD-like secretion proteins
BER93_00300	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_00300	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
BER93_00300	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_00305	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_00305	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
BER93_00305	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_00335	SSF74650	Galactose mutarotase-like
BER93_00335	SSF81296	E set domains
BER93_00340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00340	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
BER93_00345	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00375	SSF46785	"Winged helix" DNA-binding domain
BER93_00400	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
BER93_00405	SSF50129	GroES-like
BER93_00405	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_00415	SSF53098	Ribonuclease H-like
BER93_00460	SSF46689	Homeodomain-like
BER93_00465	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_00470	SSF51905	FAD/NAD(P)-binding domain
BER93_00500	SSF46785	"Winged helix" DNA-binding domain
BER93_00510	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00515	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
BER93_00515	SSF51230	Single hybrid motif
BER93_00515	SSF52777	CoA-dependent acyltransferases
BER93_00520	SSF50044	SH3-domain
BER93_00525	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_00525	SSF52922	TK C-terminal domain-like
BER93_00530	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_00535	SSF140959	Indolic compounds 2,3-dioxygenase-like
BER93_00540	SSF103473	MFS general substrate transporter
BER93_00545	SSF52833	Thioredoxin-like
BER93_00555	SSF46785	"Winged helix" DNA-binding domain
BER93_00560	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
BER93_00565	SSF51182	RmlC-like cupins
BER93_00590	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_00590	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_00605	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00610	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
BER93_00610	SSF63380	Riboflavin synthase domain-like
BER93_00620	SSF53474	alpha/beta-Hydrolases
BER93_00625	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00635	SSF74653	TolA/TonB C-terminal domain
BER93_00650	SSF47616	GST C-terminal domain-like
BER93_00650	SSF52833	Thioredoxin-like
BER93_00655	SSF53098	Ribonuclease H-like
BER93_00740	SSF69255	gp5 N-terminal domain-like
BER93_00740	SSF69279	Phage tail proteins
BER93_00745	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_00750	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_00850	SSF160719	gpW/gp25-like
BER93_00915	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_00915	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_00920	SSF69500	DTD-like
BER93_00930	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_00935	SSF142695	RibA-like
BER93_00950	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_00955	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_00970	SSF48013	NusB-like
BER93_00970	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_00975	SSF50486	FMT C-terminal domain-like
BER93_00975	SSF53328	Formyltransferase
BER93_00980	SSF56420	Peptide deformylase
BER93_00985	SSF54106	LysM domain
BER93_00990	SSF102405	MCP/YpsA-like
BER93_01010	SSF56712	Prokaryotic type I DNA topoisomerase
BER93_01015	SSF55821	YrdC/RibB
BER93_01040	SSF56935	Porins
BER93_01065	SSF50998	Quinoprotein alcohol dehydrogenase-like
BER93_01070	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_01075	SSF103473	MFS general substrate transporter
BER93_01085	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_01085	SSF52172	CheY-like
BER93_01085	SSF55785	PYP-like sensor domain (PAS domain)
BER93_01085	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_01095	SSF46785	"Winged helix" DNA-binding domain
BER93_01095	SSF55781	GAF domain-like
BER93_01100	SSF103473	MFS general substrate transporter
BER93_01105	SSF54909	Dimeric alpha+beta barrel
BER93_01110	SSF51604	Enolase C-terminal domain-like
BER93_01110	SSF54826	Enolase N-terminal domain-like
BER93_01115	SSF56529	FAH
BER93_01120	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_01125	SSF51556	Metallo-dependent hydrolases
BER93_01130	SSF51430	NAD(P)-linked oxidoreductase
BER93_01135	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_01135	SSF52172	CheY-like
BER93_01140	SSF56801	Acetyl-CoA synthetase-like
BER93_01145	SSF56935	Porins
BER93_01160	SSF56219	DNase I-like
BER93_01165	SSF51316	Mss4-like
BER93_01175	SSF56214	4'-phosphopantetheinyl transferase
BER93_01185	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_01190	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_01200	SSF143800	L28p-like
BER93_01205	SSF57829	Zn-binding ribosomal proteins
BER93_01210	SSF56024	Phospholipase D/nuclease
BER93_01215	SSF51905	FAD/NAD(P)-binding domain
BER93_01220	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_01250	SSF46785	"Winged helix" DNA-binding domain
BER93_01250	SSF50037	C-terminal domain of transcriptional repressors
BER93_01250	SSF55681	Class II aaRS and biotin synthetases
BER93_01255	SSF53067	Actin-like ATPase domain
BER93_01260	SSF110997	Sporulation related repeat
BER93_01275	SSF53098	Ribonuclease H-like
BER93_01280	SSF46689	Homeodomain-like
BER93_01310	SSF53474	alpha/beta-Hydrolases
BER93_01325	SSF160113	YegP-like
BER93_01325	SSF52374	Nucleotidylyl transferase
BER93_01340	SSF52768	Arginase/deacetylase
BER93_01365	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_01375	SSF81342	Transmembrane di-heme cytochromes
BER93_01380	SSF56634	Heme-dependent catalase-like
BER93_01385	SSF53187	Zn-dependent exopeptidases
BER93_01390	SSF56784	HAD-like
BER93_01415	SSF50156	PDZ domain-like
BER93_01415	SSF50494	Trypsin-like serine proteases
BER93_01420	SSF58113	Apolipoprotein A-I
BER93_01435	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_01435	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_01440	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_01440	SSF52172	CheY-like
BER93_01475	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_01530	SSF103365	Hypothetical protein PH1602
BER93_01535	SSF46689	Homeodomain-like
BER93_01540	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
BER93_01540	SSF54292	2Fe-2S ferredoxin-like
BER93_01540	SSF63380	Riboflavin synthase domain-like
BER93_01550	SSF141868	EAL domain-like
BER93_01555	SSF50814	Lipocalins
BER93_01565	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_01565	SSF54211	Ribosomal protein S5 domain 2-like
BER93_01575	SSF54913	GlnB-like
BER93_01580	SSF51445	(Trans)glycosidases
BER93_01580	SSF55545	beta-N-acetylhexosaminidase-like domain
BER93_01600	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_01605	SSF50621	Alanine racemase C-terminal domain-like
BER93_01605	SSF51419	PLP-binding barrel
BER93_01630	SSF47807	5' to 3' exonuclease, C-terminal subdomain
BER93_01630	SSF53098	Ribonuclease H-like
BER93_01630	SSF56672	DNA/RNA polymerases
BER93_01630	SSF88723	PIN domain-like
BER93_01635	SSF102886	Coproporphyrinogen III oxidase
BER93_01655	SSF53474	alpha/beta-Hydrolases
BER93_01655	SSF82171	DPP6 N-terminal domain-like
BER93_01660	SSF56801	Acetyl-CoA synthetase-like
BER93_01665	SSF55298	YjgF-like
BER93_01670	SSF51905	FAD/NAD(P)-binding domain
BER93_01675	SSF47336	ACP-like
BER93_01685	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
BER93_01690	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_01705	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_01710	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_01720	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_01725	SSF51905	FAD/NAD(P)-binding domain
BER93_01730	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_01735	SSF53901	Thiolase-like
BER93_01740	SSF53901	Thiolase-like
BER93_01745	SSF160191	YcgL-like
BER93_01750	SSF48403	Ankyrin repeat
BER93_01755	SSF52788	Phosphotyrosine protein phosphatases I
BER93_01760	SSF48208	Six-hairpin glycosidases
BER93_01765	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_01765	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_01770	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_01775	SSF51069	Carbonic anhydrase
BER93_01780	SSF158791	MgtE N-terminal domain-like
BER93_01780	SSF161093	MgtE membrane domain-like
BER93_01780	SSF54631	CBS-domain pair
BER93_01785	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_01785	SSF52210	Succinyl-CoA synthetase domains
BER93_01785	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_01785	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_01795	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
BER93_01795	SSF51998	PFL-like glycyl radical enzymes
BER93_01800	SSF47240	Ferritin-like
BER93_01805	SSF52218	Flavoproteins
BER93_01810	SSF52833	Thioredoxin-like
BER93_01825	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_01830	SSF53098	Ribonuclease H-like
BER93_01835	SSF51695	PLC-like phosphodiesterases
BER93_01840	SSF56935	Porins
BER93_01845	SSF55144	LigT-like
BER93_01860	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_01860	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
BER93_01860	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_01865	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_01865	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_01875	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_01880	SSF111369	HlyD-like secretion proteins
BER93_01885	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_01925	SSF53098	Ribonuclease H-like
BER93_01935	SSF46689	Homeodomain-like
BER93_01960	SSF51395	FMN-linked oxidoreductases
BER93_01975	SSF53383	PLP-dependent transferases
BER93_01980	SSF56655	Carbohydrate phosphatase
BER93_01985	SSF51126	Pectin lyase-like
BER93_01990	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_02010	SSF55811	Nudix
BER93_02015	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02020	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_02050	SSF53901	Thiolase-like
BER93_02055	SSF48452	TPR-like
BER93_02065	SSF69618	HemD-like
BER93_02070	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_02080	SSF52821	Rhodanese/Cell cycle control phosphatase
BER93_02085	SSF54611	SecB-like
BER93_02090	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_02090	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02095	SSF56935	Porins
BER93_02100	SSF52467	DHS-like NAD/FAD-binding domain
BER93_02100	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_02110	SSF75217	alpha/beta knot
BER93_02120	SSF53901	Thiolase-like
BER93_02130	SSF46689	Homeodomain-like
BER93_02135	SSF53098	Ribonuclease H-like
BER93_02150	SSF55315	L30e-like
BER93_02150	SSF75217	alpha/beta knot
BER93_02160	SSF51569	Aldolase
BER93_02165	SSF50182	Sm-like ribonucleoproteins
BER93_02180	SSF50447	Translation proteins
BER93_02180	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_02180	SSF54980	EF-G C-terminal domain-like
BER93_02185	SSF50891	Cyclophilin-like
BER93_02190	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02190	SSF56327	LDH C-terminal domain-like
BER93_02225	SSF51395	FMN-linked oxidoreductases
BER93_02225	SSF51905	FAD/NAD(P)-binding domain
BER93_02225	SSF51971	Nucleotide-binding domain
BER93_02230	SSF50129	GroES-like
BER93_02230	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02235	SSF103088	OmpA-like
BER93_02235	SSF103647	TSP type-3 repeat
BER93_02235	SSF56925	OMPA-like
BER93_02245	SSF55120	Pseudouridine synthase
BER93_02245	SSF55174	Alpha-L RNA-binding motif
BER93_02255	SSF53383	PLP-dependent transferases
BER93_02260	SSF53850	Periplasmic binding protein-like II
BER93_02265	SSF161098	MetI-like
BER93_02270	SSF161098	MetI-like
BER93_02275	SSF50331	MOP-like
BER93_02275	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_02285	SSF50129	GroES-like
BER93_02285	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02290	SSF56935	Porins
BER93_02295	SSF53649	Alkaline phosphatase-like
BER93_02300	SSF53254	Phosphoglycerate mutase-like
BER93_02315	SSF81273	H-NS histone-like proteins
BER93_02320	SSF51011	Glycosyl hydrolase domain
BER93_02320	SSF51445	(Trans)glycosidases
BER93_02320	SSF81296	E set domains
BER93_02335	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_02345	SSF52172	CheY-like
BER93_02350	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_02350	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_02370	SSF63380	Riboflavin synthase domain-like
BER93_02375	SSF142695	RibA-like
BER93_02375	SSF55821	YrdC/RibB
BER93_02380	SSF52121	Lumazine synthase
BER93_02385	SSF48013	NusB-like
BER93_02390	SSF55326	PurM N-terminal domain-like
BER93_02390	SSF56042	PurM C-terminal domain-like
BER93_02410	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_02425	SSF55931	Glutamine synthetase/guanido kinase
BER93_02430	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_02435	SSF46626	Cytochrome c
BER93_02440	SSF52833	Thioredoxin-like
BER93_02445	SSF52833	Thioredoxin-like
BER93_02450	SSF56219	DNase I-like
BER93_02455	SSF50129	GroES-like
BER93_02455	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02460	SSF48371	ARM repeat
BER93_02480	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02490	SSF53474	alpha/beta-Hydrolases
BER93_02490	SSF82171	DPP6 N-terminal domain-like
BER93_02500	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_02525	SSF143865	CorA soluble domain-like
BER93_02525	SSF144083	Magnesium transport protein CorA, transmembrane region
BER93_02540	SSF51219	TRAP-like
BER93_02545	SSF48208	Six-hairpin glycosidases
BER93_02565	SSF63411	LuxS/MPP-like metallohydrolase
BER93_02570	SSF55073	Nucleotide cyclase
BER93_02570	SSF55781	GAF domain-like
BER93_02570	SSF55785	PYP-like sensor domain (PAS domain)
BER93_02585	SSF49384	Carbohydrate-binding domain
BER93_02585	SSF51445	(Trans)glycosidases
BER93_02590	SSF52091	SpoIIaa-like
BER93_02600	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_02605	SSF53474	alpha/beta-Hydrolases
BER93_02615	SSF52172	CheY-like
BER93_02620	SSF53850	Periplasmic binding protein-like II
BER93_02620	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
BER93_02630	SSF46785	"Winged helix" DNA-binding domain
BER93_02635	SSF50814	Lipocalins
BER93_02645	SSF50993	Peptidase/esterase 'gauge' domain
BER93_02645	SSF53474	alpha/beta-Hydrolases
BER93_02655	SSF53383	PLP-dependent transferases
BER93_02660	SSF50993	Peptidase/esterase 'gauge' domain
BER93_02660	SSF53474	alpha/beta-Hydrolases
BER93_02670	SSF54506	Diaminopimelate epimerase-like
BER93_02680	SSF56349	DNA breaking-rejoining enzymes
BER93_02685	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_02690	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_02700	SSF53927	Cytidine deaminase-like
BER93_02715	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_02720	SSF55073	Nucleotide cyclase
BER93_02725	SSF48371	ARM repeat
BER93_02725	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_02725	SSF63737	Leukotriene A4 hydrolase N-terminal domain
BER93_02735	SSF56784	HAD-like
BER93_02740	SSF53613	Ribokinase-like
BER93_02745	SSF53067	Actin-like ATPase domain
BER93_02760	SSF56519	Penicillin binding protein dimerisation domain
BER93_02760	SSF56601	beta-lactamase/transpeptidase-like
BER93_02770	SSF51126	Pectin lyase-like
BER93_02775	SSF53955	Lysozyme-like
BER93_02780	SSF110997	Sporulation related repeat
BER93_02780	SSF50685	Barwin-like endoglucanases
BER93_02785	SSF56601	beta-lactamase/transpeptidase-like
BER93_02785	SSF69189	Penicillin-binding protein associated domain
BER93_02795	SSF117991	YbeD/HP0495-like
BER93_02800	SSF55681	Class II aaRS and biotin synthetases
BER93_02805	SSF102114	Radical SAM enzymes
BER93_02830	SSF50156	PDZ domain-like
BER93_02830	SSF52096	ClpP/crotonase
BER93_02840	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
BER93_02875	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_02875	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02880	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02880	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_02890	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_02890	SSF55785	PYP-like sensor domain (PAS domain)
BER93_02890	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_02895	SSF52172	CheY-like
BER93_02900	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_02900	SSF52172	CheY-like
BER93_02900	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_02905	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
BER93_02910	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_02915	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_02935	SSF53098	Ribonuclease H-like
BER93_02940	SSF46689	Homeodomain-like
BER93_02950	SSF46689	Homeodomain-like
BER93_02955	SSF46785	"Winged helix" DNA-binding domain
BER93_02955	SSF64288	Chorismate lyase-like
BER93_02960	SSF103473	MFS general substrate transporter
BER93_02965	SSF47413	lambda repressor-like DNA-binding domains
BER93_02965	SSF53822	Periplasmic binding protein-like I
BER93_02970	SSF53697	SIS domain
BER93_02975	SSF51338	Composite domain of metallo-dependent hydrolases
BER93_02975	SSF51556	Metallo-dependent hydrolases
BER93_02990	SSF50129	GroES-like
BER93_02990	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03000	SSF53474	alpha/beta-Hydrolases
BER93_03015	SSF49899	Concanavalin A-like lectins/glucanases
BER93_03025	SSF51338	Composite domain of metallo-dependent hydrolases
BER93_03030	SSF48452	TPR-like
BER93_03070	SSF46689	Homeodomain-like
BER93_03080	SSF52821	Rhodanese/Cell cycle control phosphatase
BER93_03080	SSF52833	Thioredoxin-like
BER93_03080	SSF89360	HesB-like domain
BER93_03085	SSF88713	Glycoside hydrolase/deacetylase
BER93_03090	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_03100	SSF53383	PLP-dependent transferases
BER93_03105	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03105	SSF90123	ABC transporter transmembrane region
BER93_03120	SSF51120	beta-Roll
BER93_03130	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03140	SSF51011	Glycosyl hydrolase domain
BER93_03140	SSF51445	(Trans)glycosidases
BER93_03145	SSF56935	Porins
BER93_03150	SSF103473	MFS general substrate transporter
BER93_03155	SSF47413	lambda repressor-like DNA-binding domains
BER93_03155	SSF53822	Periplasmic binding protein-like I
BER93_03160	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03170	SSF56935	Porins
BER93_03175	SSF52172	CheY-like
BER93_03180	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_03180	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_03185	SSF53850	Periplasmic binding protein-like II
BER93_03190	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_03190	SSF52172	CheY-like
BER93_03195	SSF54001	Cysteine proteinases
BER93_03200	SSF46689	Homeodomain-like
BER93_03215	SSF46689	Homeodomain-like
BER93_03225	SSF103190	Sensory domain-like
BER93_03225	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_03225	SSF52172	CheY-like
BER93_03225	SSF55785	PYP-like sensor domain (PAS domain)
BER93_03225	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_03230	SSF56935	Porins
BER93_03235	SSF118215	Proton glutamate symport protein
BER93_03240	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03240	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
BER93_03240	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
BER93_03255	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_03270	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_03275	SSF56954	Outer membrane efflux proteins (OEP)
BER93_03280	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_03285	SSF46689	Homeodomain-like
BER93_03285	SSF48498	Tetracyclin repressor-like, C-terminal domain
BER93_03290	SSF46785	"Winged helix" DNA-binding domain
BER93_03295	SSF53732	Aconitase iron-sulfur domain
BER93_03300	SSF52016	LeuD/IlvD-like
BER93_03305	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
BER93_03310	SSF56935	Porins
BER93_03320	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
BER93_03320	SSF51569	Aldolase
BER93_03325	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_03335	SSF52467	DHS-like NAD/FAD-binding domain
BER93_03335	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_03340	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_03340	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03365	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_03375	SSF46689	Homeodomain-like
BER93_03380	SSF56935	Porins
BER93_03385	SSF109604	HD-domain/PDEase-like
BER93_03385	SSF52172	CheY-like
BER93_03390	SSF50324	Inorganic pyrophosphatase
BER93_03420	SSF53784	Phosphofructokinase
BER93_03425	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03430	SSF51984	MurCD N-terminal domain
BER93_03430	SSF53244	MurD-like peptide ligases, peptide-binding domain
BER93_03430	SSF53623	MurD-like peptide ligases, catalytic domain
BER93_03435	SSF88697	PUA domain-like
BER93_03445	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
BER93_03450	SSF56112	Protein kinase-like (PK-like)
BER93_03455	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03475	SSF53383	PLP-dependent transferases
BER93_03480	SSF53383	PLP-dependent transferases
BER93_03485	SSF51391	Thiamin phosphate synthase
BER93_03490	SSF57802	Rubredoxin-like
BER93_03495	SSF48452	TPR-like
BER93_03505	SSF100950	NagB/RpiA/CoA transferase-like
BER93_03505	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
BER93_03510	SSF88697	PUA domain-like
BER93_03515	SSF100950	NagB/RpiA/CoA transferase-like
BER93_03525	SSF102829	Cell division protein ZapA-like
BER93_03535	SSF101327	YgfB-like
BER93_03540	SSF53092	Creatinase/prolidase N-terminal domain
BER93_03540	SSF55920	Creatinase/aminopeptidase
BER93_03545	SSF55920	Creatinase/aminopeptidase
BER93_03560	SSF102114	Radical SAM enzymes
BER93_03565	SSF52972	ITPase-like
BER93_03570	SSF54211	Ribosomal protein S5 domain 2-like
BER93_03570	SSF55666	Ribonuclease PH domain 2-like
BER93_03580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03585	SSF63562	RPB6/omega subunit-like
BER93_03590	SSF109604	HD-domain/PDEase-like
BER93_03590	SSF55021	ACT-like
BER93_03590	SSF81271	TGS-like
BER93_03590	SSF81301	Nucleotidyltransferase
BER93_03595	SSF55298	YjgF-like
BER93_03600	SSF50249	Nucleic acid-binding proteins
BER93_03600	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03610	SSF53590	Nucleoside hydrolase
BER93_03615	SSF143800	L28p-like
BER93_03620	SSF48256	Citrate synthase
BER93_03630	SSF53955	Lysozyme-like
BER93_03630	SSF56601	beta-lactamase/transpeptidase-like
BER93_03635	SSF53067	Actin-like ATPase domain
BER93_03695	SSF52980	Restriction endonuclease-like
BER93_03700	SSF53822	Periplasmic binding protein-like I
BER93_03705	SSF53790	Tetrapyrrole methylase
BER93_03720	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
BER93_03735	SSF89447	AbrB/MazE/MraZ-like
BER93_03740	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_03740	SSF81799	Putative methyltransferase TM0872, insert domain
BER93_03750	SSF56519	Penicillin binding protein dimerisation domain
BER93_03750	SSF56601	beta-lactamase/transpeptidase-like
BER93_03755	SSF53244	MurD-like peptide ligases, peptide-binding domain
BER93_03755	SSF53623	MurD-like peptide ligases, catalytic domain
BER93_03755	SSF63418	MurE/MurF N-terminal domain
BER93_03760	SSF53244	MurD-like peptide ligases, peptide-binding domain
BER93_03760	SSF53623	MurD-like peptide ligases, catalytic domain
BER93_03760	SSF63418	MurE/MurF N-terminal domain
BER93_03775	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_03780	SSF51984	MurCD N-terminal domain
BER93_03780	SSF53244	MurD-like peptide ligases, peptide-binding domain
BER93_03780	SSF53623	MurD-like peptide ligases, catalytic domain
BER93_03785	SSF52440	PreATP-grasp domain
BER93_03785	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_03795	SSF53067	Actin-like ATPase domain
BER93_03800	SSF52490	Tubulin nucleotide-binding domain-like
BER93_03800	SSF55307	Tubulin C-terminal domain-like
BER93_03805	SSF54211	Ribosomal protein S5 domain 2-like
BER93_03815	SSF51261	Duplicated hybrid motif
BER93_03820	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03820	SSF81767	Pre-protein crosslinking domain of SecA
BER93_03820	SSF81886	Helical scaffold and wing domains of SecA
BER93_03830	SSF51391	Thiamin phosphate synthase
BER93_03830	SSF55811	Nudix
BER93_03840	SSF51730	FAD-linked oxidoreductase
BER93_03850	SSF50129	GroES-like
BER93_03850	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03860	SSF54001	Cysteine proteinases
BER93_03875	SSF46689	Homeodomain-like
BER93_03885	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03900	SSF54523	Pili subunits
BER93_03905	SSF160246	EspE N-terminal domain-like
BER93_03905	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03920	SSF140931	Fic-like
BER93_03925	SSF46689	Homeodomain-like
BER93_03925	SSF52172	CheY-like
BER93_03925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_03930	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_03930	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_03935	SSF52210	Succinyl-CoA synthetase domains
BER93_03935	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_03940	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_03940	SSF52210	Succinyl-CoA synthetase domains
BER93_03945	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_03945	SSF56317	Carbon-nitrogen hydrolase
BER93_03950	SSF48452	TPR-like
BER93_03955	SSF55120	Pseudouridine synthase
BER93_03955	SSF55174	Alpha-L RNA-binding motif
BER93_03960	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
BER93_03985	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_03990	SSF48208	Six-hairpin glycosidases
BER93_03995	SSF56784	HAD-like
BER93_04000	SSF56935	Porins
BER93_04025	SSF47616	GST C-terminal domain-like
BER93_04025	SSF52833	Thioredoxin-like
BER93_04030	SSF82771	GIY-YIG endonuclease
BER93_04040	SSF46689	Homeodomain-like
BER93_04055	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_04070	SSF55120	Pseudouridine synthase
BER93_04070	SSF55174	Alpha-L RNA-binding motif
BER93_04075	SSF52172	CheY-like
BER93_04085	SSF47819	HRDC-like
BER93_04085	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04090	SSF47240	Ferritin-like
BER93_04095	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04100	SSF102114	Radical SAM enzymes
BER93_04110	SSF48613	Heme oxygenase-like
BER93_04115	SSF56281	Metallo-hydrolase/oxidoreductase
BER93_04120	SSF109604	HD-domain/PDEase-like
BER93_04120	SSF55021	ACT-like
BER93_04120	SSF81271	TGS-like
BER93_04120	SSF81301	Nucleotidyltransferase
BER93_04125	SSF48452	TPR-like
BER93_04130	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_04130	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_04135	SSF53955	Lysozyme-like
BER93_04135	SSF56601	beta-lactamase/transpeptidase-like
BER93_04140	SSF48452	TPR-like
BER93_04145	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04150	SSF53067	Actin-like ATPase domain
BER93_04155	SSF74653	TolA/TonB C-terminal domain
BER93_04160	SSF52440	PreATP-grasp domain
BER93_04160	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_04165	SSF52172	CheY-like
BER93_04170	SSF52172	CheY-like
BER93_04175	SSF50341	CheW-like
BER93_04180	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_04185	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_04185	SSF50341	CheW-like
BER93_04185	SSF52172	CheY-like
BER93_04185	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_04190	SSF52738	Methylesterase CheB, C-terminal domain
BER93_04200	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_04215	SSF110395	CutC-like
BER93_04220	SSF52058	L domain-like
BER93_04235	SSF49785	Galactose-binding domain-like
BER93_04235	SSF51445	(Trans)glycosidases
BER93_04240	SSF53098	Ribonuclease H-like
BER93_04245	SSF69255	gp5 N-terminal domain-like
BER93_04245	SSF69279	Phage tail proteins
BER93_04245	SSF69349	Phage fibre proteins
BER93_04275	SSF160631	SMI1/KNR4-like
BER93_04280	SSF46689	Homeodomain-like
BER93_04285	SSF53098	Ribonuclease H-like
BER93_04290	SSF46589	tRNA-binding arm
BER93_04290	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
BER93_04290	SSF50677	ValRS/IleRS/LeuRS editing domain
BER93_04290	SSF52374	Nucleotidylyl transferase
BER93_04295	SSF102400	DNA polymerase III chi subunit
BER93_04300	SSF52949	Macro domain-like
BER93_04300	SSF53187	Zn-dependent exopeptidases
BER93_04325	SSF47823	lambda integrase-like, N-terminal domain
BER93_04325	SSF56349	DNA breaking-rejoining enzymes
BER93_04330	SSF52833	Thioredoxin-like
BER93_04330	SSF54423	DsbC/DsbG N-terminal domain-like
BER93_04335	SSF109736	FGAM synthase PurL, linker domain
BER93_04335	SSF52317	Class I glutamine amidotransferase-like
BER93_04335	SSF55326	PurM N-terminal domain-like
BER93_04335	SSF56042	PurM C-terminal domain-like
BER93_04335	SSF82697	PurS-like
BER93_04345	SSF101967	Adhesin YadA, collagen-binding domain
BER93_04345	SSF54523	Pili subunits
BER93_04350	SSF52743	Subtilisin-like
BER93_04355	SSF160246	EspE N-terminal domain-like
BER93_04355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04365	SSF54523	Pili subunits
BER93_04370	SSF54523	Pili subunits
BER93_04385	SSF158544	GspK insert domain-like
BER93_04390	SSF53067	Actin-like ATPase domain
BER93_04410	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_04415	SSF46785	"Winged helix" DNA-binding domain
BER93_04415	SSF64288	Chorismate lyase-like
BER93_04425	SSF56935	Porins
BER93_04430	SSF56112	Protein kinase-like (PK-like)
BER93_04435	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_04445	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
BER93_04450	SSF52025	PA domain
BER93_04465	SSF56420	Peptide deformylase
BER93_04470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04480	SSF53383	PLP-dependent transferases
BER93_04490	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_04495	SSF53597	Dihydrofolate reductase-like
BER93_04495	SSF53927	Cytidine deaminase-like
BER93_04520	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_04540	SSF56925	OMPA-like
BER93_04545	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04555	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_04555	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
BER93_04565	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_04570	SSF46689	Homeodomain-like
BER93_04570	SSF48498	Tetracyclin repressor-like, C-terminal domain
BER93_04585	SSF55973	S-adenosylmethionine synthetase
BER93_04595	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_04600	SSF51395	FMN-linked oxidoreductases
BER93_04610	SSF140478	LemA-like
BER93_04625	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_04625	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_04630	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_04630	SSF52172	CheY-like
BER93_04635	SSF52266	SGNH hydrolase
BER93_04640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_04680	SSF51430	NAD(P)-linked oxidoreductase
BER93_04690	SSF53613	Ribokinase-like
BER93_04710	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
BER93_04720	SSF53597	Dihydrofolate reductase-like
BER93_04725	SSF56300	Metallo-dependent phosphatases
BER93_04730	SSF110069	ApaG-like
BER93_04735	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_04740	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
BER93_04745	SSF109998	Triger factor/SurA peptide-binding domain-like
BER93_04745	SSF54534	FKBP-like
BER93_04755	SSF52768	Arginase/deacetylase
BER93_04760	SSF89028	Cobalamin adenosyltransferase-like
BER93_04770	SSF51905	FAD/NAD(P)-binding domain
BER93_04775	SSF51905	FAD/NAD(P)-binding domain
BER93_04790	SSF46785	"Winged helix" DNA-binding domain
BER93_04790	SSF53850	Periplasmic binding protein-like II
BER93_04810	SSF63829	Calcium-dependent phosphotriesterase
BER93_04815	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_04815	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_04820	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_04825	SSF53927	Cytidine deaminase-like
BER93_04835	SSF50715	Ribosomal protein L25-like
BER93_04835	SSF52374	Nucleotidylyl transferase
BER93_04840	SSF47616	GST C-terminal domain-like
BER93_04840	SSF52833	Thioredoxin-like
BER93_04850	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_04855	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_04855	SSF55781	GAF domain-like
BER93_04860	SSF55068	Peptide methionine sulfoxide reductase
BER93_04865	SSF51569	Aldolase
BER93_04870	SSF54534	FKBP-like
BER93_04875	SSF46785	"Winged helix" DNA-binding domain
BER93_04875	SSF53850	Periplasmic binding protein-like II
BER93_04880	SSF51905	FAD/NAD(P)-binding domain
BER93_04880	SSF52833	Thioredoxin-like
BER93_04885	SSF52833	Thioredoxin-like
BER93_04890	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_04895	SSF53474	alpha/beta-Hydrolases
BER93_04905	SSF53187	Zn-dependent exopeptidases
BER93_04910	SSF55811	Nudix
BER93_04915	SSF47807	5' to 3' exonuclease, C-terminal subdomain
BER93_04915	SSF88723	PIN domain-like
BER93_04920	SSF55469	FMN-dependent nitroreductase-like
BER93_04940	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_04940	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_04950	SSF117916	Fe-S cluster assembly (FSCA) domain-like
BER93_04955	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
BER93_04970	SSF52743	Subtilisin-like
BER93_04975	SSF55826	YbaK/ProRS associated domain
BER93_04980	SSF53774	Glutaminase/Asparaginase
BER93_04990	SSF52218	Flavoproteins
BER93_05000	SSF52833	Thioredoxin-like
BER93_05010	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05015	SSF53218	Molybdenum cofactor biosynthesis proteins
BER93_05020	SSF48452	TPR-like
BER93_05020	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_05025	SSF75620	Release factor
BER93_05030	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_05030	SSF69075	Glutamyl tRNA-reductase dimerization domain
BER93_05030	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
BER93_05035	SSF48452	TPR-like
BER93_05040	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
BER93_05045	SSF54211	Ribosomal protein S5 domain 2-like
BER93_05045	SSF55060	GHMP Kinase, C-terminal domain
BER93_05055	SSF53271	PRTase-like
BER93_05060	SSF50715	Ribosomal protein L25-like
BER93_05065	SSF53178	Peptidyl-tRNA hydrolase-like
BER93_05070	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05070	SSF81271	TGS-like
BER93_05090	SSF50447	Translation proteins
BER93_05090	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
BER93_05090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05105	SSF50104	Translation proteins SH3-like domain
BER93_05105	SSF82679	N-utilization substance G protein NusG, N-terminal domain
BER93_05110	SSF46906	Ribosomal protein L11, C-terminal domain
BER93_05110	SSF54747	Ribosomal L11/L12e N-terminal domain
BER93_05115	SSF56808	Ribosomal protein L1
BER93_05120	SSF160369	Ribosomal protein L10-like
BER93_05125	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
BER93_05125	SSF54736	ClpS-like
BER93_05130	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
BER93_05135	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
BER93_05140	SSF50249	Nucleic acid-binding proteins
BER93_05145	SSF47973	Ribosomal protein S7
BER93_05150	SSF50447	Translation proteins
BER93_05150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05150	SSF54211	Ribosomal protein S5 domain 2-like
BER93_05150	SSF54980	EF-G C-terminal domain-like
BER93_05155	SSF50447	Translation proteins
BER93_05155	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
BER93_05155	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05160	SSF54999	Ribosomal protein S10
BER93_05165	SSF50447	Translation proteins
BER93_05170	SSF52166	Ribosomal protein L4
BER93_05175	SSF54189	Ribosomal proteins S24e, L23 and L15e
BER93_05180	SSF50104	Translation proteins SH3-like domain
BER93_05180	SSF50249	Nucleic acid-binding proteins
BER93_05185	SSF54570	Ribosomal protein S19
BER93_05190	SSF54843	Ribosomal protein L22
BER93_05195	SSF54814	Prokaryotic type KH domain (KH-domain type II)
BER93_05195	SSF54821	Ribosomal protein S3 C-terminal domain
BER93_05200	SSF54686	Ribosomal protein L16p/L10e
BER93_05205	SSF46561	Ribosomal protein L29 (L29p)
BER93_05210	SSF50249	Nucleic acid-binding proteins
BER93_05215	SSF50193	Ribosomal protein L14
BER93_05220	SSF50104	Translation proteins SH3-like domain
BER93_05225	SSF55282	RL5-like
BER93_05230	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
BER93_05235	SSF56047	Ribosomal protein S8
BER93_05240	SSF56053	Ribosomal protein L6
BER93_05245	SSF53137	Translational machinery components
BER93_05250	SSF54211	Ribosomal protein S5 domain 2-like
BER93_05250	SSF54768	dsRNA-binding domain-like
BER93_05255	SSF55129	Ribosomal protein L30p/L7e
BER93_05260	SSF52080	Ribosomal proteins L15p and L18e
BER93_05265	SSF103491	Preprotein translocase SecY subunit
BER93_05270	SSF46946	S13-like H2TH domain
BER93_05275	SSF53137	Translational machinery components
BER93_05280	SSF55174	Alpha-L RNA-binding motif
BER93_05285	SSF47789	C-terminal domain of RNA polymerase alpha subunit
BER93_05285	SSF55257	RBP11-like subunits of RNA polymerase
BER93_05285	SSF56553	Insert subdomain of RNA polymerase alpha subunit
BER93_05290	SSF64263	Prokaryotic ribosomal protein L17
BER93_05295	SSF158442	DsbB-like
BER93_05315	SSF53474	alpha/beta-Hydrolases
BER93_05325	SSF53474	alpha/beta-Hydrolases
BER93_05340	SSF81330	Gated mechanosensitive channel
BER93_05345	SSF56529	FAH
BER93_05355	SSF116726	TrkA C-terminal domain-like
BER93_05360	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_05365	SSF110399	ThiG-like
BER93_05370	SSF54285	MoaD/ThiS
BER93_05375	SSF103515	Autotransporter
BER93_05375	SSF52266	SGNH hydrolase
BER93_05385	SSF56349	DNA breaking-rejoining enzymes
BER93_05410	SSF47413	lambda repressor-like DNA-binding domains
BER93_05430	SSF53098	Ribonuclease H-like
BER93_05435	SSF46689	Homeodomain-like
BER93_05445	SSF55073	Nucleotide cyclase
BER93_05445	SSF55785	PYP-like sensor domain (PAS domain)
BER93_05515	SSF47413	lambda repressor-like DNA-binding domains
BER93_05520	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05535	SSF47090	PGBD-like
BER93_05545	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05545	SSF90123	ABC transporter transmembrane region
BER93_05580	SSF103473	MFS general substrate transporter
BER93_05585	SSF46689	Homeodomain-like
BER93_05605	SSF53590	Nucleoside hydrolase
BER93_05615	SSF46689	Homeodomain-like
BER93_05620	SSF53254	Phosphoglycerate mutase-like
BER93_05625	SSF53613	Ribokinase-like
BER93_05645	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_05655	SSF51206	cAMP-binding domain-like
BER93_05655	SSF51905	FAD/NAD(P)-binding domain
BER93_05660	SSF141868	EAL domain-like
BER93_05665	SSF109604	HD-domain/PDEase-like
BER93_05675	SSF75217	alpha/beta knot
BER93_05675	SSF88697	PUA domain-like
BER93_05680	SSF53383	PLP-dependent transferases
BER93_05685	SSF55811	Nudix
BER93_05690	SSF56655	Carbohydrate phosphatase
BER93_05695	SSF101386	all-alpha NTP pyrophosphatases
BER93_05700	SSF101790	Aminomethyltransferase beta-barrel domain
BER93_05700	SSF103025	Folate-binding domain
BER93_05705	SSF51230	Single hybrid motif
BER93_05715	SSF56601	beta-lactamase/transpeptidase-like
BER93_05730	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
BER93_05730	SSF56645	Acyl-CoA dehydrogenase NM domain-like
BER93_05735	SSF53474	alpha/beta-Hydrolases
BER93_05740	SSF46689	Homeodomain-like
BER93_05740	SSF48498	Tetracyclin repressor-like, C-terminal domain
BER93_05760	SSF56784	HAD-like
BER93_05775	SSF46689	Homeodomain-like
BER93_05785	SSF118352	HSP33 redox switch-like
BER93_05785	SSF64397	Hsp33 domain
BER93_05790	SSF53955	Lysozyme-like
BER93_05795	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_05800	SSF54631	CBS-domain pair
BER93_05815	SSF50447	Translation proteins
BER93_05815	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05815	SSF54980	EF-G C-terminal domain-like
BER93_05830	SSF53474	alpha/beta-Hydrolases
BER93_05835	SSF53383	PLP-dependent transferases
BER93_05840	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_05840	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_05845	SSF53474	alpha/beta-Hydrolases
BER93_05855	SSF53383	PLP-dependent transferases
BER93_05865	SSF52833	Thioredoxin-like
BER93_05870	SSF101874	YceI-like
BER93_05875	SSF81342	Transmembrane di-heme cytochromes
BER93_05880	SSF101874	YceI-like
BER93_05885	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_05885	SSF52172	CheY-like
BER93_05885	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_05885	SSF63829	Calcium-dependent phosphotriesterase
BER93_05900	SSF74650	Galactose mutarotase-like
BER93_05910	SSF47446	Signal peptide-binding domain
BER93_05910	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_05920	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
BER93_05925	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
BER93_05930	SSF54565	Ribosomal protein S16
BER93_05935	SSF50346	PRC-barrel domain
BER93_05935	SSF50447	Translation proteins
BER93_05940	SSF75217	alpha/beta knot
BER93_05945	SSF50104	Translation proteins SH3-like domain
BER93_05955	SSF55174	Alpha-L RNA-binding motif
BER93_05985	SSF55073	Nucleotide cyclase
BER93_06000	SSF52954	Class II aaRS ABD-related
BER93_06000	SSF55186	ThrRS/AlaRS common domain
BER93_06000	SSF55681	Class II aaRS and biotin synthetases
BER93_06000	SSF81271	TGS-like
BER93_06005	SSF54364	Translation initiation factor IF3, N-terminal domain
BER93_06005	SSF55200	Translation initiation factor IF3, C-terminal domain
BER93_06010	SSF143034	L35p-like
BER93_06015	SSF74731	Ribosomal protein L20
BER93_06020	SSF46589	tRNA-binding arm
BER93_06020	SSF55681	Class II aaRS and biotin synthetases
BER93_06025	SSF46955	Putative DNA-binding domain
BER93_06025	SSF50249	Nucleic acid-binding proteins
BER93_06025	SSF54991	Anticodon-binding domain of PheRS
BER93_06025	SSF55681	Class II aaRS and biotin synthetases
BER93_06025	SSF56037	PheT/TilS domain
BER93_06030	SSF47729	IHF-like DNA-binding proteins
BER93_06035	SSF46955	Putative DNA-binding domain
BER93_06075	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_06080	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_06090	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_06110	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_06110	SSF52922	TK C-terminal domain-like
BER93_06125	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
BER93_06125	SSF56645	Acyl-CoA dehydrogenase NM domain-like
BER93_06130	SSF117070	LEA14-like
BER93_06135	SSF50814	Lipocalins
BER93_06155	SSF82771	GIY-YIG endonuclease
BER93_06170	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_06190	SSF111148	YggX-like
BER93_06195	SSF48150	DNA-glycosylase
BER93_06195	SSF55811	Nudix
BER93_06200	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06205	SSF46689	Homeodomain-like
BER93_06205	SSF55785	PYP-like sensor domain (PAS domain)
BER93_06210	SSF54506	Diaminopimelate epimerase-like
BER93_06215	SSF51905	FAD/NAD(P)-binding domain
BER93_06215	SSF54373	FAD-linked reductases, C-terminal domain
BER93_06220	SSF54292	2Fe-2S ferredoxin-like
BER93_06225	SSF51905	FAD/NAD(P)-binding domain
BER93_06230	SSF51569	Aldolase
BER93_06235	SSF53720	ALDH-like
BER93_06240	SSF53092	Creatinase/prolidase N-terminal domain
BER93_06240	SSF55920	Creatinase/aminopeptidase
BER93_06260	SSF53474	alpha/beta-Hydrolases
BER93_06260	SSF82171	DPP6 N-terminal domain-like
BER93_06290	SSF52743	Subtilisin-like
BER93_06290	SSF54897	Protease propeptides/inhibitors
BER93_06295	SSF48208	Six-hairpin glycosidases
BER93_06300	SSF56935	Porins
BER93_06305	SSF48371	ARM repeat
BER93_06320	SSF56935	Porins
BER93_06345	SSF46689	Homeodomain-like
BER93_06355	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_06365	SSF52096	ClpP/crotonase
BER93_06370	SSF160975	AF1531-like
BER93_06370	SSF50249	Nucleic acid-binding proteins
BER93_06370	SSF89550	PHP domain-like
BER93_06375	SSF53098	Ribonuclease H-like
BER93_06380	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_06385	SSF51161	Trimeric LpxA-like enzymes
BER93_06390	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_06395	SSF51161	Trimeric LpxA-like enzymes
BER93_06410	SSF50156	PDZ domain-like
BER93_06415	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_06415	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_06415	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
BER93_06425	SSF64005	Undecaprenyl diphosphate synthase
BER93_06430	SSF55194	Ribosome recycling factor, RRF
BER93_06435	SSF53633	Carbamate kinase-like
BER93_06445	SSF46934	UBA-like
BER93_06445	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
BER93_06450	SSF52313	Ribosomal protein S2
BER93_06455	SSF49354	PapD-like
BER93_06475	SSF49354	PapD-like
BER93_06485	SSF55920	Creatinase/aminopeptidase
BER93_06490	SSF109604	HD-domain/PDEase-like
BER93_06490	SSF55021	ACT-like
BER93_06490	SSF81301	Nucleotidyltransferase
BER93_06490	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
BER93_06495	SSF51161	Trimeric LpxA-like enzymes
BER93_06500	SSF52833	Thioredoxin-like
BER93_06505	SSF53187	Zn-dependent exopeptidases
BER93_06505	SSF55031	Bacterial exopeptidase dimerisation domain
BER93_06510	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_06510	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_06515	SSF51126	Pectin lyase-like
BER93_06520	SSF56935	Porins
BER93_06525	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_06535	SSF47240	Ferritin-like
BER93_06545	SSF101904	GyrA/ParC C-terminal domain-like
BER93_06545	SSF56719	Type II DNA topoisomerase
BER93_06550	SSF46785	"Winged helix" DNA-binding domain
BER93_06555	SSF56954	Outer membrane efflux proteins (OEP)
BER93_06560	SSF111369	HlyD-like secretion proteins
BER93_06565	SSF103473	MFS general substrate transporter
BER93_06580	SSF103473	MFS general substrate transporter
BER93_06585	SSF144091	Rhomboid-like
BER93_06595	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_06605	SSF46785	"Winged helix" DNA-binding domain
BER93_06615	SSF52833	Thioredoxin-like
BER93_06625	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
BER93_06625	SSF63380	Riboflavin synthase domain-like
BER93_06630	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06630	SSF90123	ABC transporter transmembrane region
BER93_06635	SSF117457	FumA C-terminal domain-like
BER93_06640	SSF53056	beta-carbonic anhydrase, cab
BER93_06660	SSF50249	Nucleic acid-binding proteins
BER93_06670	SSF47175	Cytochromes
BER93_06675	SSF69572	Activating enzymes of the ubiquitin-like proteins
BER93_06680	SSF51556	Metallo-dependent hydrolases
BER93_06700	SSF47616	GST C-terminal domain-like
BER93_06700	SSF52833	Thioredoxin-like
BER93_06705	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_06705	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_06710	SSF52218	Flavoproteins
BER93_06715	SSF48024	N-terminal domain of DnaB helicase
BER93_06715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06720	SSF48173	Cryptochrome/photolyase FAD-binding domain
BER93_06720	SSF52425	Cryptochrome/photolyase, N-terminal domain
BER93_06725	SSF103088	OmpA-like
BER93_06735	SSF53098	Ribonuclease H-like
BER93_06740	SSF46689	Homeodomain-like
BER93_06760	SSF47413	lambda repressor-like DNA-binding domains
BER93_06765	SSF53720	ALDH-like
BER93_06770	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
BER93_06770	SSF56645	Acyl-CoA dehydrogenase NM domain-like
BER93_06775	SSF52096	ClpP/crotonase
BER93_06780	SSF52096	ClpP/crotonase
BER93_06785	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_06785	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_06790	SSF160240	Cation efflux protein cytoplasmic domain-like
BER93_06790	SSF161111	Cation efflux protein transmembrane domain-like
BER93_06795	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_06795	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_06795	SSF52096	ClpP/crotonase
BER93_06800	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_06800	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_06805	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
BER93_06810	SSF50156	PDZ domain-like
BER93_06810	SSF50494	Trypsin-like serine proteases
BER93_06830	SSF46689	Homeodomain-like
BER93_06835	SSF53098	Ribonuclease H-like
BER93_06845	SSF143865	CorA soluble domain-like
BER93_06845	SSF144083	Magnesium transport protein CorA, transmembrane region
BER93_06855	SSF54631	CBS-domain pair
BER93_06855	SSF56176	FAD-binding/transporter-associated domain-like
BER93_06865	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_06870	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06875	SSF102114	Radical SAM enzymes
BER93_06885	SSF53955	Lysozyme-like
BER93_06890	SSF50022	ISP domain
BER93_06895	SSF81342	Transmembrane di-heme cytochromes
BER93_06895	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
BER93_06900	SSF46626	Cytochrome c
BER93_06905	SSF47616	GST C-terminal domain-like
BER93_06905	SSF52833	Thioredoxin-like
BER93_06910	SSF101738	SspB-like
BER93_06920	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06925	SSF50486	FMT C-terminal domain-like
BER93_06940	SSF81273	H-NS histone-like proteins
BER93_06955	SSF47819	HRDC-like
BER93_06955	SSF53098	Ribonuclease H-like
BER93_06960	SSF56436	C-type lectin-like
BER93_06975	SSF50447	Translation proteins
BER93_06975	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06975	SSF54980	EF-G C-terminal domain-like
BER93_06980	SSF51306	LexA/Signal peptidase
BER93_06990	SSF54768	dsRNA-binding domain-like
BER93_06990	SSF69065	RNase III domain-like
BER93_06995	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_06995	SSF54814	Prokaryotic type KH domain (KH-domain type II)
BER93_07000	SSF50249	Nucleic acid-binding proteins
BER93_07000	SSF57863	ArfGap/RecO-like zinc finger
BER93_07005	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_07005	SSF52172	CheY-like
BER93_07010	SSF50249	Nucleic acid-binding proteins
BER93_07010	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_07015	SSF55154	CYTH-like phosphatases
BER93_07020	SSF51905	FAD/NAD(P)-binding domain
BER93_07025	SSF48173	Cryptochrome/photolyase FAD-binding domain
BER93_07030	SSF51445	(Trans)glycosidases
BER93_07035	SSF53271	PRTase-like
BER93_07040	SSF53167	Purine and uridine phosphorylases
BER93_07045	SSF50249	Nucleic acid-binding proteins
BER93_07050	SSF56300	Metallo-dependent phosphatases
BER93_07055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07060	SSF117018	ATP-dependent DNA ligase DNA-binding domain
BER93_07060	SSF50249	Nucleic acid-binding proteins
BER93_07060	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
BER93_07070	SSF56281	Metallo-hydrolase/oxidoreductase
BER93_07100	SSF53901	Thiolase-like
BER93_07110	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_07110	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
BER93_07115	SSF81901	HCP-like
BER93_07140	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07145	SSF53955	Lysozyme-like
BER93_07145	SSF54106	LysM domain
BER93_07155	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
BER93_07160	SSF55120	Pseudouridine synthase
BER93_07165	SSF51366	Ribulose-phoshate binding barrel
BER93_07190	SSF46785	"Winged helix" DNA-binding domain
BER93_07190	SSF53850	Periplasmic binding protein-like II
BER93_07195	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_07200	SSF51366	Ribulose-phoshate binding barrel
BER93_07205	SSF52096	ClpP/crotonase
BER93_07210	SSF53738	Phosphoglucomutase, first 3 domains
BER93_07210	SSF55957	Phosphoglucomutase, C-terminal domain
BER93_07215	SSF51197	Clavaminate synthase-like
BER93_07220	SSF49464	Carboxypeptidase regulatory domain-like
BER93_07220	SSF49503	Cupredoxins
BER93_07225	SSF141868	EAL domain-like
BER93_07225	SSF158472	HAMP domain-like
BER93_07225	SSF55073	Nucleotide cyclase
BER93_07235	SSF46458	Globin-like
BER93_07240	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_07245	SSF51351	Triosephosphate isomerase (TIM)
BER93_07265	SSF56770	HydA/Nqo6-like
BER93_07270	SSF143243	Nqo5-like
BER93_07275	SSF56762	HydB/Nqo4-like
BER93_07280	SSF52833	Thioredoxin-like
BER93_07285	SSF140490	Nqo1C-terminal domain-like
BER93_07285	SSF142019	Nqo1 FMN-binding domain-like
BER93_07285	SSF142984	Nqo1 middle domain-like
BER93_07290	SSF50692	ADC-like
BER93_07290	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
BER93_07290	SSF54292	2Fe-2S ferredoxin-like
BER93_07290	SSF54862	4Fe-4S ferredoxins
BER93_07300	SSF54862	4Fe-4S ferredoxins
BER93_07335	SSF74942	YhbC-like, C-terminal domain
BER93_07335	SSF75420	YhbC-like, N-terminal domain
BER93_07340	SSF47794	Rad51 N-terminal domain-like
BER93_07340	SSF50249	Nucleic acid-binding proteins
BER93_07340	SSF54814	Prokaryotic type KH domain (KH-domain type II)
BER93_07340	SSF69705	Transcription factor NusA, N-terminal domain
BER93_07345	SSF46955	Putative DNA-binding domain
BER93_07345	SSF50447	Translation proteins
BER93_07345	SSF52156	Initiation factor IF2/eIF5b, domain 3
BER93_07345	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07350	SSF89919	Ribosome-binding factor A, RbfA
BER93_07355	SSF55120	Pseudouridine synthase
BER93_07355	SSF88697	PUA domain-like
BER93_07360	SSF47060	S15/NS1 RNA-binding domain
BER93_07365	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
BER93_07365	SSF50249	Nucleic acid-binding proteins
BER93_07365	SSF54211	Ribosomal protein S5 domain 2-like
BER93_07365	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
BER93_07365	SSF55666	Ribonuclease PH domain 2-like
BER93_07385	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
BER93_07385	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
BER93_07390	SSF158997	Trm112p-like
BER93_07395	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
BER93_07400	SSF51246	Rudiment single hybrid motif
BER93_07400	SSF52440	PreATP-grasp domain
BER93_07400	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_07405	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
BER93_07405	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
BER93_07410	SSF52833	Thioredoxin-like
BER93_07415	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_07425	SSF49464	Carboxypeptidase regulatory domain-like
BER93_07425	SSF56935	Porins
BER93_07430	SSF102405	MCP/YpsA-like
BER93_07440	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_07445	SSF54523	Pili subunits
BER93_07450	SSF50998	Quinoprotein alcohol dehydrogenase-like
BER93_07460	SSF109604	HD-domain/PDEase-like
BER93_07460	SSF52172	CheY-like
BER93_07465	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_07465	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_07465	SSF52172	CheY-like
BER93_07465	SSF55785	PYP-like sensor domain (PAS domain)
BER93_07465	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_07475	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07485	SSF103473	MFS general substrate transporter
BER93_07490	SSF53927	Cytidine deaminase-like
BER93_07495	SSF50692	ADC-like
BER93_07495	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
BER93_07500	SSF46785	"Winged helix" DNA-binding domain
BER93_07510	SSF46689	Homeodomain-like
BER93_07515	SSF53098	Ribonuclease H-like
BER93_07525	SSF51905	FAD/NAD(P)-binding domain
BER93_07530	SSF54368	Glutamine synthetase, N-terminal domain
BER93_07530	SSF55931	Glutamine synthetase/guanido kinase
BER93_07535	SSF54368	Glutamine synthetase, N-terminal domain
BER93_07535	SSF55931	Glutamine synthetase/guanido kinase
BER93_07540	SSF53850	Periplasmic binding protein-like II
BER93_07545	SSF111369	HlyD-like secretion proteins
BER93_07550	SSF103473	MFS general substrate transporter
BER93_07555	SSF56954	Outer membrane efflux proteins (OEP)
BER93_07560	SSF50331	MOP-like
BER93_07560	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07565	SSF161098	MetI-like
BER93_07570	SSF161098	MetI-like
BER93_07575	SSF53720	ALDH-like
BER93_07585	SSF55785	PYP-like sensor domain (PAS domain)
BER93_07595	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_07595	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
BER93_07595	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_07600	SSF111369	HlyD-like secretion proteins
BER93_07605	SSF46689	Homeodomain-like
BER93_07605	SSF48498	Tetracyclin repressor-like, C-terminal domain
BER93_07610	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_07610	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
BER93_07655	SSF47598	Ribbon-helix-helix
BER93_07695	SSF46689	Homeodomain-like
BER93_07705	SSF53098	Ribonuclease H-like
BER93_07715	SSF46600	C-terminal UvrC-binding domain of UvrB
BER93_07715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07735	SSF54427	NTF2-like
BER93_07750	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07755	SSF53955	Lysozyme-like
BER93_07770	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07805	SSF47090	PGBD-like
BER93_07825	SSF69318	Integrin alpha N-terminal domain
BER93_07830	SSF47090	PGBD-like
BER93_07835	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07870	SSF47090	PGBD-like
BER93_07900	SSF56349	DNA breaking-rejoining enzymes
BER93_07920	SSF47413	lambda repressor-like DNA-binding domains
BER93_07945	SSF56349	DNA breaking-rejoining enzymes
BER93_07960	SSF74982	Small protein B (SmpB)
BER93_07965	SSF55961	Bet v1-like
BER93_07970	SSF54285	MoaD/ThiS
BER93_07980	SSF46785	"Winged helix" DNA-binding domain
BER93_07985	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_07990	SSF46785	"Winged helix" DNA-binding domain
BER93_07990	SSF55781	GAF domain-like
BER93_07995	SSF51064	Head domain of nucleotide exchange factor GrpE
BER93_07995	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
BER93_08000	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
BER93_08000	SSF53067	Actin-like ATPase domain
BER93_08005	SSF46565	Chaperone J-domain
BER93_08005	SSF49493	HSP40/DnaJ peptide-binding domain
BER93_08005	SSF57938	DnaJ/Hsp40 cysteine-rich domain
BER93_08010	SSF53613	Ribokinase-like
BER93_08015	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_08015	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_08015	SSF55021	ACT-like
BER93_08025	SSF56954	Outer membrane efflux proteins (OEP)
BER93_08030	SSF111369	HlyD-like secretion proteins
BER93_08035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08035	SSF90123	ABC transporter transmembrane region
BER93_08050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08050	SSF90123	ABC transporter transmembrane region
BER93_08055	SSF54211	Ribosomal protein S5 domain 2-like
BER93_08055	SSF54980	EF-G C-terminal domain-like
BER93_08060	SSF102405	MCP/YpsA-like
BER93_08065	SSF51905	FAD/NAD(P)-binding domain
BER93_08065	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
BER93_08070	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
BER93_08070	SSF51230	Single hybrid motif
BER93_08070	SSF52777	CoA-dependent acyltransferases
BER93_08075	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_08080	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_08085	SSF51197	Clavaminate synthase-like
BER93_08090	SSF48557	L-aspartase-like
BER93_08095	SSF48557	L-aspartase-like
BER93_08105	SSF46689	Homeodomain-like
BER93_08115	SSF53098	Ribonuclease H-like
BER93_08145	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08150	SSF46785	"Winged helix" DNA-binding domain
BER93_08160	SSF52833	Thioredoxin-like
BER93_08165	SSF54534	FKBP-like
BER93_08170	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_08170	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_08170	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
BER93_08190	SSF47413	lambda repressor-like DNA-binding domains
BER93_08190	SSF53822	Periplasmic binding protein-like I
BER93_08195	SSF103473	MFS general substrate transporter
BER93_08200	SSF53613	Ribokinase-like
BER93_08205	SSF48208	Six-hairpin glycosidases
BER93_08210	SSF47644	Methionine synthase domain
BER93_08210	SSF51717	Dihydropteroate synthetase-like
BER93_08210	SSF52242	Cobalamin (vitamin B12)-binding domain
BER93_08210	SSF56507	Methionine synthase activation domain-like
BER93_08215	SSF82282	Homocysteine S-methyltransferase
BER93_08220	SSF46785	"Winged helix" DNA-binding domain
BER93_08220	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_08225	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
BER93_08225	SSF56645	Acyl-CoA dehydrogenase NM domain-like
BER93_08230	SSF52266	SGNH hydrolase
BER93_08240	SSF50249	Nucleic acid-binding proteins
BER93_08245	SSF55315	L30e-like
BER93_08245	SSF75217	alpha/beta knot
BER93_08250	SSF55073	Nucleotide cyclase
BER93_08255	SSF53098	Ribonuclease H-like
BER93_08260	SSF109755	PhoU-like
BER93_08265	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08270	SSF161098	MetI-like
BER93_08275	SSF161098	MetI-like
BER93_08280	SSF53850	Periplasmic binding protein-like II
BER93_08290	SSF53850	Periplasmic binding protein-like II
BER93_08310	SSF53056	beta-carbonic anhydrase, cab
BER93_08320	SSF48150	DNA-glycosylase
BER93_08335	SSF54534	FKBP-like
BER93_08340	SSF55811	Nudix
BER93_08345	SSF52821	Rhodanese/Cell cycle control phosphatase
BER93_08355	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
BER93_08360	SSF50800	PK beta-barrel domain-like
BER93_08365	SSF53474	alpha/beta-Hydrolases
BER93_08370	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_08375	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_08380	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_08385	SSF111331	NAD kinase/diacylglycerol kinase-like
BER93_08410	SSF53098	Ribonuclease H-like
BER93_08415	SSF51905	FAD/NAD(P)-binding domain
BER93_08420	SSF53383	PLP-dependent transferases
BER93_08430	SSF51182	RmlC-like cupins
BER93_08435	SSF53056	beta-carbonic anhydrase, cab
BER93_08460	SSF50249	Nucleic acid-binding proteins
BER93_08460	SSF55681	Class II aaRS and biotin synthetases
BER93_08465	SSF89360	HesB-like domain
BER93_08470	SSF54995	Ribosomal protein S6
BER93_08475	SSF46911	Ribosomal protein S18
BER93_08480	SSF55653	Ribosomal protein L9 C-domain
BER93_08480	SSF55658	L9 N-domain-like
BER93_08485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08485	SSF57997	Tropomyosin
BER93_08485	SSF75553	Smc hinge domain
BER93_08490	SSF64383	Cell-division protein ZipA, C-terminal domain
BER93_08495	SSF47781	RuvA domain 2-like
BER93_08495	SSF50249	Nucleic acid-binding proteins
BER93_08495	SSF52113	BRCT domain
BER93_08495	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
BER93_08500	SSF55681	Class II aaRS and biotin synthetases
BER93_08515	SSF100950	NagB/RpiA/CoA transferase-like
BER93_08520	SSF101904	GyrA/ParC C-terminal domain-like
BER93_08520	SSF56719	Type II DNA topoisomerase
BER93_08530	SSF53098	Ribonuclease H-like
BER93_08535	SSF111326	Urocanase
BER93_08540	SSF53187	Zn-dependent exopeptidases
BER93_08545	SSF48557	L-aspartase-like
BER93_08550	SSF51338	Composite domain of metallo-dependent hydrolases
BER93_08550	SSF51556	Metallo-dependent hydrolases
BER93_08555	SSF51338	Composite domain of metallo-dependent hydrolases
BER93_08555	SSF51556	Metallo-dependent hydrolases
BER93_08560	SSF46785	"Winged helix" DNA-binding domain
BER93_08560	SSF64288	Chorismate lyase-like
BER93_08575	SSF49879	SMAD/FHA domain
BER93_08590	SSF52833	Thioredoxin-like
BER93_08595	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_08605	SSF103263	Chorismate synthase, AroC
BER93_08610	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_08610	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
BER93_08615	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_08615	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_08625	SSF158472	HAMP domain-like
BER93_08625	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_08630	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08635	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_08635	SSF52172	CheY-like
BER93_08635	SSF55785	PYP-like sensor domain (PAS domain)
BER93_08635	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_08640	SSF46689	Homeodomain-like
BER93_08655	SSF48452	TPR-like
BER93_08665	SSF52833	Thioredoxin-like
BER93_08675	SSF52743	Subtilisin-like
BER93_08685	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_08685	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_08710	SSF103473	MFS general substrate transporter
BER93_08715	SSF51679	Bacterial luciferase-like
BER93_08725	SSF54631	CBS-domain pair
BER93_08725	SSF56176	FAD-binding/transporter-associated domain-like
BER93_08745	SSF53474	alpha/beta-Hydrolases
BER93_08750	SSF54211	Ribosomal protein S5 domain 2-like
BER93_08750	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_08750	SSF56719	Type II DNA topoisomerase
BER93_08760	SSF52317	Class I glutamine amidotransferase-like
BER93_08760	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08765	SSF51569	Aldolase
BER93_08770	SSF51604	Enolase C-terminal domain-like
BER93_08770	SSF54826	Enolase N-terminal domain-like
BER93_08780	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_08785	SSF69765	IpsF-like
BER93_08790	SSF55120	Pseudouridine synthase
BER93_08795	SSF160443	SMR domain-like
BER93_08800	SSF64167	SurE-like
BER93_08805	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_08815	SSF51261	Duplicated hybrid motif
BER93_08855	SSF53474	alpha/beta-Hydrolases
BER93_08865	SSF48452	TPR-like
BER93_08875	SSF52833	Thioredoxin-like
BER93_08885	SSF82093	Heme chaperone CcmE
BER93_08905	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_08910	SSF53383	PLP-dependent transferases
BER93_08915	SSF56317	Carbon-nitrogen hydrolase
BER93_08920	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
BER93_08930	SSF55120	Pseudouridine synthase
BER93_08930	SSF55174	Alpha-L RNA-binding motif
BER93_08935	SSF46785	"Winged helix" DNA-binding domain
BER93_08945	SSF54909	Dimeric alpha+beta barrel
BER93_08950	SSF82657	BolA-like
BER93_08955	SSF47413	lambda repressor-like DNA-binding domains
BER93_08955	SSF53822	Periplasmic binding protein-like I
BER93_08960	SSF49452	Starch-binding domain-like
BER93_08960	SSF56935	Porins
BER93_08970	SSF53850	Periplasmic binding protein-like II
BER93_08975	SSF161098	MetI-like
BER93_08980	SSF161098	MetI-like
BER93_08985	SSF48208	Six-hairpin glycosidases
BER93_08985	SSF49785	Galactose-binding domain-like
BER93_09005	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_09010	SSF56317	Carbon-nitrogen hydrolase
BER93_09015	SSF55909	Pentein
BER93_09025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09030	SSF50249	Nucleic acid-binding proteins
BER93_09035	SSF47729	IHF-like DNA-binding proteins
BER93_09045	SSF81901	HCP-like
BER93_09055	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_09055	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_09060	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_09070	SSF46689	Homeodomain-like
BER93_09095	SSF158757	SMc04008-like
BER93_09100	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_09100	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
BER93_09105	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
BER93_09105	SSF54631	CBS-domain pair
BER93_09110	SSF52317	Class I glutamine amidotransferase-like
BER93_09110	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_09110	SSF54810	GMP synthetase C-terminal dimerisation domain
BER93_09115	SSF56349	DNA breaking-rejoining enzymes
BER93_09120	SSF46955	Putative DNA-binding domain
BER93_09140	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09155	SSF47598	Ribbon-helix-helix
BER93_09160	SSF88723	PIN domain-like
BER93_09165	SSF101082	Typo IV secretion system protein TraC
BER93_09170	SSF46689	Homeodomain-like
BER93_09180	SSF53098	Ribonuclease H-like
BER93_09210	SSF52954	Class II aaRS ABD-related
BER93_09210	SSF55681	Class II aaRS and biotin synthetases
BER93_09215	SSF48295	TrpR-like
BER93_09220	SSF53850	Periplasmic binding protein-like II
BER93_09225	SSF53720	ALDH-like
BER93_09230	SSF53383	PLP-dependent transferases
BER93_09235	SSF54211	Ribosomal protein S5 domain 2-like
BER93_09235	SSF56784	HAD-like
BER93_09240	SSF52317	Class I glutamine amidotransferase-like
BER93_09245	SSF51366	Ribulose-phoshate binding barrel
BER93_09250	SSF51366	Ribulose-phoshate binding barrel
BER93_09255	SSF101386	all-alpha NTP pyrophosphatases
BER93_09255	SSF141734	HisI-like
BER93_09260	SSF56300	Metallo-dependent phosphatases
BER93_09275	SSF52129	Caspase-like
BER93_09280	SSF56784	HAD-like
BER93_09285	SSF51182	RmlC-like cupins
BER93_09290	SSF53639	AraD/HMP-PK domain-like
BER93_09305	SSF55811	Nudix
BER93_09310	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_09310	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
BER93_09310	SSF55021	ACT-like
BER93_09315	SSF55103	FAD-linked oxidases, C-terminal domain
BER93_09315	SSF56176	FAD-binding/transporter-associated domain-like
BER93_09330	SSF50104	Translation proteins SH3-like domain
BER93_09330	SSF50249	Nucleic acid-binding proteins
BER93_09335	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_09340	SSF51569	Aldolase
BER93_09345	SSF52096	ClpP/crotonase
BER93_09350	SSF50037	C-terminal domain of transcriptional repressors
BER93_09355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09370	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_09370	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_09375	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
BER93_09375	SSF52317	Class I glutamine amidotransferase-like
BER93_09380	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09385	SSF88723	PIN domain-like
BER93_09390	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
BER93_09390	SSF52335	Methylglyoxal synthase-like
BER93_09390	SSF52440	PreATP-grasp domain
BER93_09390	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_09395	SSF46557	GreA transcript cleavage protein, N-terminal domain
BER93_09395	SSF54534	FKBP-like
BER93_09405	SSF64182	DHH phosphoesterases
BER93_09410	SSF75620	Release factor
BER93_09415	SSF50249	Nucleic acid-binding proteins
BER93_09415	SSF55681	Class II aaRS and biotin synthetases
BER93_09420	SSF109604	HD-domain/PDEase-like
BER93_09420	SSF52172	CheY-like
BER93_09430	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_09430	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_09430	SSF52172	CheY-like
BER93_09430	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_09435	SSF52096	ClpP/crotonase
BER93_09440	SSF56801	Acetyl-CoA synthetase-like
BER93_09450	SSF52016	LeuD/IlvD-like
BER93_09450	SSF53732	Aconitase iron-sulfur domain
BER93_09455	SSF89447	AbrB/MazE/MraZ-like
BER93_09460	SSF88723	PIN domain-like
BER93_09465	SSF52016	LeuD/IlvD-like
BER93_09465	SSF53732	Aconitase iron-sulfur domain
BER93_09465	SSF74778	Aconitase B, N-terminal domain
BER93_09470	SSF53474	alpha/beta-Hydrolases
BER93_09475	SSF141868	EAL domain-like
BER93_09475	SSF55073	Nucleotide cyclase
BER93_09475	SSF55781	GAF domain-like
BER93_09475	SSF55785	PYP-like sensor domain (PAS domain)
BER93_09480	SSF52172	CheY-like
BER93_09480	SSF52738	Methylesterase CheB, C-terminal domain
BER93_09485	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
BER93_09490	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
BER93_09490	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_09500	SSF50341	CheW-like
BER93_09510	SSF158472	HAMP domain-like
BER93_09510	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_09520	SSF158472	HAMP domain-like
BER93_09520	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_09525	SSF158472	HAMP domain-like
BER93_09525	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_09535	SSF158472	HAMP domain-like
BER93_09535	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_09560	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_09560	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_09560	SSF50341	CheW-like
BER93_09560	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_09565	SSF52172	CheY-like
BER93_09570	SSF52091	SpoIIaa-like
BER93_09575	SSF50341	CheW-like
BER93_09580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09585	SSF103088	OmpA-like
BER93_09620	SSF50249	Nucleic acid-binding proteins
BER93_09640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09660	SSF50249	Nucleic acid-binding proteins
BER93_09705	SSF117916	Fe-S cluster assembly (FSCA) domain-like
BER93_09705	SSF89360	HesB-like domain
BER93_09710	SSF55248	PCD-like
BER93_09715	SSF74653	TolA/TonB C-terminal domain
BER93_09720	SSF46689	Homeodomain-like
BER93_09725	SSF53098	Ribonuclease H-like
BER93_09730	SSF53098	Ribonuclease H-like
BER93_09750	SSF55120	Pseudouridine synthase
BER93_09750	SSF55174	Alpha-L RNA-binding motif
BER93_09755	SSF50249	Nucleic acid-binding proteins
BER93_09760	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_09760	SSF52172	CheY-like
BER93_09765	SSF52821	Rhodanese/Cell cycle control phosphatase
BER93_09775	SSF54534	FKBP-like
BER93_09785	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_09785	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_09785	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
BER93_09805	SSF46689	Homeodomain-like
BER93_09815	SSF53098	Ribonuclease H-like
BER93_09845	SSF69255	gp5 N-terminal domain-like
BER93_09845	SSF69279	Phage tail proteins
BER93_09855	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_09855	SSF81923	Double Clp-N motif
BER93_09870	SSF160719	gpW/gp25-like
BER93_09875	SSF141452	Hcp1-like
BER93_09890	SSF48452	TPR-like
BER93_09910	SSF69255	gp5 N-terminal domain-like
BER93_09935	SSF69255	gp5 N-terminal domain-like
BER93_09935	SSF69349	Phage fibre proteins
BER93_09975	SSF69255	gp5 N-terminal domain-like
BER93_09975	SSF69349	Phage fibre proteins
BER93_09980	SSF46689	Homeodomain-like
BER93_10015	SSF47240	Ferritin-like
BER93_10040	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_10040	SSF53790	Tetrapyrrole methylase
BER93_10040	SSF75615	Siroheme synthase middle domains-like
BER93_10050	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_10055	SSF53218	Molybdenum cofactor biosynthesis proteins
BER93_10055	SSF63867	MoeA C-terminal domain-like
BER93_10055	SSF63882	MoeA N-terminal region -like
BER93_10070	SSF56935	Porins
BER93_10075	SSF52821	Rhodanese/Cell cycle control phosphatase
BER93_10075	SSF69572	Activating enzymes of the ubiquitin-like proteins
BER93_10080	SSF53218	Molybdenum cofactor biosynthesis proteins
BER93_10080	SSF63867	MoeA C-terminal domain-like
BER93_10080	SSF63882	MoeA N-terminal region -like
BER93_10085	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10090	SSF50998	Quinoprotein alcohol dehydrogenase-like
BER93_10095	SSF48452	TPR-like
BER93_10105	SSF48452	TPR-like
BER93_10110	SSF102114	Radical SAM enzymes
BER93_10115	SSF54919	Nucleoside diphosphate kinase, NDK
BER93_10120	SSF46689	Homeodomain-like
BER93_10120	SSF48498	Tetracyclin repressor-like, C-terminal domain
BER93_10125	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_10125	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_10125	SSF52096	ClpP/crotonase
BER93_10130	SSF53901	Thiolase-like
BER93_10135	SSF81340	Clc chloride channel
BER93_10145	SSF48019	post-AAA+ oligomerization domain-like
BER93_10145	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10150	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
BER93_10155	SSF54001	Cysteine proteinases
BER93_10160	SSF46785	"Winged helix" DNA-binding domain
BER93_10160	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10165	SSF51905	FAD/NAD(P)-binding domain
BER93_10170	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_10175	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_10180	SSF50249	Nucleic acid-binding proteins
BER93_10185	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10185	SSF81923	Double Clp-N motif
BER93_10190	SSF54736	ClpS-like
BER93_10195	SSF55811	Nudix
BER93_10200	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_10205	SSF101322	YcfC-like
BER93_10210	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_10230	SSF55785	PYP-like sensor domain (PAS domain)
BER93_10230	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_10235	SSF141868	EAL domain-like
BER93_10235	SSF52172	CheY-like
BER93_10235	SSF55073	Nucleotide cyclase
BER93_10240	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_10240	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_10245	SSF140566	FlgN-like
BER93_10250	SSF101498	Anti-sigma factor FlgM
BER93_10260	SSF50341	CheW-like
BER93_10260	SSF52172	CheY-like
BER93_10280	SSF117143	Flagellar hook protein flgE
BER93_10285	SSF117143	Flagellar hook protein flgE
BER93_10290	SSF117143	Flagellar hook protein flgE
BER93_10310	SSF64518	Phase 1 flagellin
BER93_10315	SSF64518	Phase 1 flagellin
BER93_10320	SSF64518	Phase 1 flagellin
BER93_10330	SSF101116	Flagellar export chaperone FliS
BER93_10345	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_10345	SSF52172	CheY-like
BER93_10355	SSF52172	CheY-like
BER93_10360	SSF46689	Homeodomain-like
BER93_10360	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10370	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_10370	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_10390	SSF48029	FliG
BER93_10400	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10420	SSF101801	Surface presentation of antigens (SPOA)
BER93_10420	SSF103039	CheC-like
BER93_10425	SSF101801	Surface presentation of antigens (SPOA)
BER93_10455	SSF55073	Nucleotide cyclase
BER93_10460	SSF55073	Nucleotide cyclase
BER93_10460	SSF63829	Calcium-dependent phosphotriesterase
BER93_10465	SSF160544	EscU C-terminal domain-like
BER93_10475	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10480	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10485	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_10485	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_10490	SSF52172	CheY-like
BER93_10495	SSF75708	Chemotaxis phosphatase CheZ
BER93_10500	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_10500	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_10500	SSF50341	CheW-like
BER93_10500	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_10565	SSF103515	Autotransporter
BER93_10565	SSF52743	Subtilisin-like
BER93_10570	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_10580	SSF46689	Homeodomain-like
BER93_10605	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_10625	SSF54211	Ribosomal protein S5 domain 2-like
BER93_10625	SSF55060	GHMP Kinase, C-terminal domain
BER93_10630	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_10630	SSF53633	Carbamate kinase-like
BER93_10630	SSF55021	ACT-like
BER93_10630	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_10640	SSF46689	Homeodomain-like
BER93_10680	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10685	SSF53098	Ribonuclease H-like
BER93_10690	SSF46689	Homeodomain-like
BER93_10695	SSF53720	ALDH-like
BER93_10705	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_10710	SSF51395	FMN-linked oxidoreductases
BER93_10715	SSF56176	FAD-binding/transporter-associated domain-like
BER93_10715	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
BER93_10720	SSF103481	Multidrug resistance efflux transporter EmrE
BER93_10725	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
BER93_10735	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_10735	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_10740	SSF46689	Homeodomain-like
BER93_10740	SSF52172	CheY-like
BER93_10750	SSF141868	EAL domain-like
BER93_10750	SSF55073	Nucleotide cyclase
BER93_10750	SSF55781	GAF domain-like
BER93_10795	SSF51445	(Trans)glycosidases
BER93_10795	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
BER93_10805	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_10830	SSF47090	PGBD-like
BER93_10840	SSF53697	SIS domain
BER93_10845	SSF50692	ADC-like
BER93_10850	SSF52374	Nucleotidylyl transferase
BER93_10855	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_10860	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
BER93_10865	SSF81301	Nucleotidyltransferase
BER93_10865	SSF81891	Poly A polymerase C-terminal region-like
BER93_10880	SSF103473	MFS general substrate transporter
BER93_10885	SSF51658	Xylose isomerase-like
BER93_10890	SSF53067	Actin-like ATPase domain
BER93_10895	SSF48208	Six-hairpin glycosidases
BER93_10900	SSF51011	Glycosyl hydrolase domain
BER93_10900	SSF51445	(Trans)glycosidases
BER93_10900	SSF56988	Anthrax protective antigen
BER93_10900	SSF74650	Galactose mutarotase-like
BER93_10905	SSF51445	(Trans)glycosidases
BER93_10910	SSF49785	Galactose-binding domain-like
BER93_10910	SSF52266	SGNH hydrolase
BER93_10915	SSF56935	Porins
BER93_10945	SSF46785	"Winged helix" DNA-binding domain
BER93_10945	SSF53850	Periplasmic binding protein-like II
BER93_10950	SSF51569	Aldolase
BER93_10955	SSF51604	Enolase C-terminal domain-like
BER93_10955	SSF54826	Enolase N-terminal domain-like
BER93_10960	SSF63829	Calcium-dependent phosphotriesterase
BER93_10970	SSF54862	4Fe-4S ferredoxins
BER93_10980	SSF51569	Aldolase
BER93_10985	SSF55021	ACT-like
BER93_10990	SSF89946	Hypothetical protein VC0424
BER93_10995	SSF52833	Thioredoxin-like
BER93_11000	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11000	SSF88723	PIN domain-like
BER93_11010	SSF53613	Ribokinase-like
BER93_11025	SSF46785	"Winged helix" DNA-binding domain
BER93_11025	SSF53850	Periplasmic binding protein-like II
BER93_11030	SSF51182	RmlC-like cupins
BER93_11050	SSF117130	CsrA-like
BER93_11055	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
BER93_11055	SSF50447	Translation proteins
BER93_11055	SSF55186	ThrRS/AlaRS common domain
BER93_11055	SSF55681	Class II aaRS and biotin synthetases
BER93_11065	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11065	SSF54752	RecA protein, C-terminal domain
BER93_11070	SSF46785	"Winged helix" DNA-binding domain
BER93_11070	SSF51306	LexA/Signal peptidase
BER93_11075	SSF56112	Protein kinase-like (PK-like)
BER93_11085	SSF56935	Porins
BER93_11090	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
BER93_11100	SSF51126	Pectin lyase-like
BER93_11125	SSF46689	Homeodomain-like
BER93_11130	SSF53098	Ribonuclease H-like
BER93_11155	SSF47823	lambda integrase-like, N-terminal domain
BER93_11155	SSF56349	DNA breaking-rejoining enzymes
BER93_11175	SSF56935	Porins
BER93_11180	SSF142433	CinA-like
BER93_11190	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11190	SSF54980	EF-G C-terminal domain-like
BER93_11195	SSF50182	Sm-like ribonucleoproteins
BER93_11200	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11205	SSF51717	Dihydropteroate synthetase-like
BER93_11210	SSF140990	FtsH protease domain-like
BER93_11210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11215	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_11220	SSF75471	YhbY-like
BER93_11225	SSF64076	MTH938-like
BER93_11245	SSF46689	Homeodomain-like
BER93_11330	SSF69255	gp5 N-terminal domain-like
BER93_11330	SSF69279	Phage tail proteins
BER93_11335	SSF56436	C-type lectin-like
BER93_11345	SSF69255	gp5 N-terminal domain-like
BER93_11345	SSF69279	Phage tail proteins
BER93_11360	SSF103088	OmpA-like
BER93_11370	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11385	SSF55166	Hedgehog/DD-peptidase
BER93_11440	SSF48452	TPR-like
BER93_11445	SSF69255	gp5 N-terminal domain-like
BER93_11445	SSF69279	Phage tail proteins
BER93_11445	SSF69349	Phage fibre proteins
BER93_11505	SSF46600	C-terminal UvrC-binding domain of UvrB
BER93_11505	SSF47781	RuvA domain 2-like
BER93_11505	SSF82771	GIY-YIG endonuclease
BER93_11510	SSF101898	NHL repeat
BER93_11510	SSF52833	Thioredoxin-like
BER93_11520	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_11525	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11530	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11530	SSF90123	ABC transporter transmembrane region
BER93_11545	SSF56281	Metallo-hydrolase/oxidoreductase
BER93_11550	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_11555	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11570	SSF109910	YgfY-like
BER93_11575	SSF46548	alpha-helical ferredoxin
BER93_11575	SSF54292	2Fe-2S ferredoxin-like
BER93_11585	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
BER93_11585	SSF51905	FAD/NAD(P)-binding domain
BER93_11585	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
BER93_11590	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
BER93_11595	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
BER93_11600	SSF103025	Folate-binding domain
BER93_11605	SSF50331	MOP-like
BER93_11605	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_11610	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_11610	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_11615	SSF53067	Actin-like ATPase domain
BER93_11620	SSF100950	NagB/RpiA/CoA transferase-like
BER93_11625	SSF143975	IlvD/EDD N-terminal domain-like
BER93_11625	SSF52016	LeuD/IlvD-like
BER93_11630	SSF51569	Aldolase
BER93_11640	SSF46626	Cytochrome c
BER93_11645	SSF46626	Cytochrome c
BER93_11680	SSF52172	CheY-like
BER93_11685	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_11685	SSF52172	CheY-like
BER93_11685	SSF55781	GAF domain-like
BER93_11685	SSF55785	PYP-like sensor domain (PAS domain)
BER93_11685	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_11690	SSF158832	Tex N-terminal region-like
BER93_11690	SSF47781	RuvA domain 2-like
BER93_11690	SSF50249	Nucleic acid-binding proteins
BER93_11690	SSF53098	Ribonuclease H-like
BER93_11715	SSF53474	alpha/beta-Hydrolases
BER93_11730	SSF55811	Nudix
BER93_11745	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_11745	SSF52009	Phosphohistidine domain
BER93_11745	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_11750	SSF50182	Sm-like ribonucleoproteins
BER93_11750	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
BER93_11750	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
BER93_11755	SSF53098	Ribonuclease H-like
BER93_11760	SSF53927	Cytidine deaminase-like
BER93_11765	SSF46785	"Winged helix" DNA-binding domain
BER93_11775	SSF53474	alpha/beta-Hydrolases
BER93_11820	SSF46689	Homeodomain-like
BER93_11840	SSF53098	Ribonuclease H-like
BER93_11845	SSF46689	Homeodomain-like
BER93_11865	SSF53720	ALDH-like
BER93_11870	SSF53633	Carbamate kinase-like
BER93_11870	SSF88697	PUA domain-like
BER93_11875	SSF54909	Dimeric alpha+beta barrel
BER93_11880	SSF51182	RmlC-like cupins
BER93_11885	SSF48557	L-aspartase-like
BER93_11890	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_11890	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_11895	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_11900	SSF53633	Carbamate kinase-like
BER93_11900	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_11905	SSF53187	Zn-dependent exopeptidases
BER93_11905	SSF55031	Bacterial exopeptidase dimerisation domain
BER93_11910	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_11910	SSF69864	Argininosuccinate synthetase, C-terminal domain
BER93_11915	SSF53671	Aspartate/ornithine carbamoyltransferase
BER93_11925	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
BER93_11925	SSF52374	Nucleotidylyl transferase
BER93_11930	SSF82649	SufE/NifU
BER93_11935	SSF103473	MFS general substrate transporter
BER93_11940	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
BER93_11940	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
BER93_11950	SSF51338	Composite domain of metallo-dependent hydrolases
BER93_11950	SSF51556	Metallo-dependent hydrolases
BER93_11955	SSF51261	Duplicated hybrid motif
BER93_11965	SSF50475	FMN-binding split barrel
BER93_11975	SSF50494	Trypsin-like serine proteases
BER93_11980	SSF51126	Pectin lyase-like
BER93_11985	SSF51126	Pectin lyase-like
BER93_11995	SSF56784	HAD-like
BER93_12000	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_12005	SSF51338	Composite domain of metallo-dependent hydrolases
BER93_12005	SSF51556	Metallo-dependent hydrolases
BER93_12015	SSF50104	Translation proteins SH3-like domain
BER93_12015	SSF50249	Nucleic acid-binding proteins
BER93_12020	SSF102114	Radical SAM enzymes
BER93_12025	SSF75217	alpha/beta knot
BER93_12030	SSF56655	Carbohydrate phosphatase
BER93_12035	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
BER93_12035	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
BER93_12040	SSF53933	Microbial ribonucleases
BER93_12045	SSF52038	Barstar-related
BER93_12050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_12055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_12060	SSF53271	PRTase-like
BER93_12070	SSF53474	alpha/beta-Hydrolases
BER93_12075	SSF47616	GST C-terminal domain-like
BER93_12075	SSF52833	Thioredoxin-like
BER93_12080	SSF50249	Nucleic acid-binding proteins
BER93_12090	SSF52980	Restriction endonuclease-like
BER93_12095	SSF160996	HI0933 insert domain-like
BER93_12095	SSF51905	FAD/NAD(P)-binding domain
BER93_12100	SSF141868	EAL domain-like
BER93_12100	SSF52172	CheY-like
BER93_12100	SSF55073	Nucleotide cyclase
BER93_12100	SSF55785	PYP-like sensor domain (PAS domain)
BER93_12110	SSF52374	Nucleotidylyl transferase
BER93_12115	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_12135	SSF118116	DNA mismatch repair protein MutL
BER93_12135	SSF54211	Ribosomal protein S5 domain 2-like
BER93_12135	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_12140	SSF53187	Zn-dependent exopeptidases
BER93_12145	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_12150	SSF53613	Ribokinase-like
BER93_12150	SSF64153	YjeF N-terminal domain-like
BER93_12155	SSF54862	4Fe-4S ferredoxins
BER93_12190	SSF51215	Regulatory protein AraC
BER93_12200	SSF82282	Homocysteine S-methyltransferase
BER93_12215	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
BER93_12215	SSF50249	Nucleic acid-binding proteins
BER93_12215	SSF52374	Nucleotidylyl transferase
BER93_12215	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
BER93_12220	SSF56784	HAD-like
BER93_12225	SSF54862	4Fe-4S ferredoxins
BER93_12240	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_12240	SSF88946	Sigma2 domain of RNA polymerase sigma factors
BER93_12255	SSF51905	FAD/NAD(P)-binding domain
BER93_12265	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_12280	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_12285	SSF55298	YjgF-like
BER93_12295	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_12300	SSF53474	alpha/beta-Hydrolases
BER93_12330	SSF103473	MFS general substrate transporter
BER93_12335	SSF51395	FMN-linked oxidoreductases
BER93_12340	SSF82057	Prokaryotic SH3-related domain
BER93_12350	SSF160240	Cation efflux protein cytoplasmic domain-like
BER93_12350	SSF161111	Cation efflux protein transmembrane domain-like
BER93_12360	SSF53067	Actin-like ATPase domain
BER93_12375	SSF46557	GreA transcript cleavage protein, N-terminal domain
BER93_12375	SSF54534	FKBP-like
BER93_12390	SSF102114	Radical SAM enzymes
BER93_12405	SSF53474	alpha/beta-Hydrolases
BER93_12410	SSF54197	HIT-like
BER93_12415	SSF51283	dUTPase-like
BER93_12420	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_12425	SSF49452	Starch-binding domain-like
BER93_12425	SSF56935	Porins
BER93_12430	SSF51905	FAD/NAD(P)-binding domain
BER93_12435	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_12440	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_12445	SSF144091	Rhomboid-like
BER93_12455	SSF51905	FAD/NAD(P)-binding domain
BER93_12455	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
BER93_12460	SSF51905	FAD/NAD(P)-binding domain
BER93_12460	SSF54373	FAD-linked reductases, C-terminal domain
BER93_12470	SSF54534	FKBP-like
BER93_12475	SSF54001	Cysteine proteinases
BER93_12480	SSF54001	Cysteine proteinases
BER93_12485	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_12490	SSF46689	Homeodomain-like
BER93_12495	SSF53098	Ribonuclease H-like
BER93_12530	SSF46785	"Winged helix" DNA-binding domain
BER93_12530	SSF53850	Periplasmic binding protein-like II
BER93_12535	SSF46589	tRNA-binding arm
BER93_12535	SSF55681	Class II aaRS and biotin synthetases
BER93_12540	SSF74653	TolA/TonB C-terminal domain
BER93_12545	SSF74653	TolA/TonB C-terminal domain
BER93_12550	SSF55205	EPT/RTPC-like
BER93_12555	SSF48600	Chorismate mutase II
BER93_12555	SSF53850	Periplasmic binding protein-like II
BER93_12555	SSF55021	ACT-like
BER93_12560	SSF53383	PLP-dependent transferases
BER93_12565	SSF56524	Oxidoreductase molybdopterin-binding domain
BER93_12570	SSF47413	lambda repressor-like DNA-binding domains
BER93_12570	SSF53822	Periplasmic binding protein-like I
BER93_12575	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
BER93_12575	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_12575	SSF52009	Phosphohistidine domain
BER93_12575	SSF55594	HPr-like
BER93_12575	SSF55804	Phoshotransferase/anion transport protein
BER93_12580	SSF53613	Ribokinase-like
BER93_12585	SSF52794	PTS system IIB component-like
BER93_12595	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_12600	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_12610	SSF51713	tRNA-guanine transglycosylase
BER93_12615	SSF111337	QueA-like
BER93_12620	SSF46785	"Winged helix" DNA-binding domain
BER93_12620	SSF54909	Dimeric alpha+beta barrel
BER93_12625	SSF53383	PLP-dependent transferases
BER93_12630	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_12640	SSF53271	PRTase-like
BER93_12655	SSF48208	Six-hairpin glycosidases
BER93_12655	SSF81296	E set domains
BER93_12660	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_12665	SSF54862	4Fe-4S ferredoxins
BER93_12675	SSF52374	Nucleotidylyl transferase
BER93_12680	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_12685	SSF110942	HSP90 C-terminal domain
BER93_12685	SSF54211	Ribosomal protein S5 domain 2-like
BER93_12685	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_12695	SSF53474	alpha/beta-Hydrolases
BER93_12715	SSF53098	Ribonuclease H-like
BER93_12725	SSF118215	Proton glutamate symport protein
BER93_12730	SSF53649	Alkaline phosphatase-like
BER93_12735	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_12735	SSF56037	PheT/TilS domain
BER93_12735	SSF82829	MesJ substrate recognition domain-like
BER93_12740	SSF116842	XseB-like
BER93_12745	SSF48576	Terpenoid synthases
BER93_12760	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
BER93_12765	SSF158710	PSPTO4464-like
BER93_12770	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
BER93_12785	SSF50249	Nucleic acid-binding proteins
BER93_12790	SSF52972	ITPase-like
BER93_12800	SSF75217	alpha/beta knot
BER93_12805	SSF46689	Homeodomain-like
BER93_12820	SSF46565	Chaperone J-domain
BER93_12825	SSF81301	Nucleotidyltransferase
BER93_12830	SSF52374	Nucleotidylyl transferase
BER93_12835	SSF48019	post-AAA+ oligomerization domain-like
BER93_12835	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_12845	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
BER93_12845	SSF50677	ValRS/IleRS/LeuRS editing domain
BER93_12845	SSF52374	Nucleotidylyl transferase
BER93_12855	SSF48452	TPR-like
BER93_12855	SSF52833	Thioredoxin-like
BER93_12880	SSF53955	Lysozyme-like
BER93_12905	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_12935	SSF160544	EscU C-terminal domain-like
BER93_12950	SSF101801	Surface presentation of antigens (SPOA)
BER93_12985	SSF69635	Type III secretory system chaperone-like
BER93_12990	SSF51126	Pectin lyase-like
BER93_13020	SSF50891	Cyclophilin-like
BER93_13050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13050	SSF90123	ABC transporter transmembrane region
BER93_13070	SSF117396	TM1631-like
BER93_13075	SSF103481	Multidrug resistance efflux transporter EmrE
BER93_13085	SSF55120	Pseudouridine synthase
BER93_13085	SSF55174	Alpha-L RNA-binding motif
BER93_13095	SSF141868	EAL domain-like
BER93_13095	SSF55073	Nucleotide cyclase
BER93_13095	SSF55785	PYP-like sensor domain (PAS domain)
BER93_13100	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13110	SSF55174	Alpha-L RNA-binding motif
BER93_13125	SSF161084	MAPEG domain-like
BER93_13145	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
BER93_13145	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
BER93_13160	SSF56935	Porins
BER93_13170	SSF50692	ADC-like
BER93_13170	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
BER93_13170	SSF54292	2Fe-2S ferredoxin-like
BER93_13170	SSF54862	4Fe-4S ferredoxins
BER93_13180	SSF49785	Galactose-binding domain-like
BER93_13180	SSF52743	Subtilisin-like
BER93_13205	SSF51445	(Trans)glycosidases
BER93_13215	SSF46785	"Winged helix" DNA-binding domain
BER93_13220	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
BER93_13220	SSF52374	Nucleotidylyl transferase
BER93_13245	SSF54001	Cysteine proteinases
BER93_13250	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_13255	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_13260	SSF141259	CarD-like
BER93_13260	SSF143517	TRCF domain-like
BER93_13260	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13265	SSF48334	DNA repair protein MutS, domain III
BER93_13265	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13265	SSF53150	DNA repair protein MutS, domain II
BER93_13265	SSF55271	DNA repair protein MutS, domain I
BER93_13270	SSF48113	Heme-dependent peroxidases
BER93_13285	SSF46689	Homeodomain-like
BER93_13305	SSF53254	Phosphoglycerate mutase-like
BER93_13350	SSF56784	HAD-like
BER93_13365	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_13375	SSF56003	Molybdenum cofactor-binding domain
BER93_13380	SSF55073	Nucleotide cyclase
BER93_13385	SSF50249	Nucleic acid-binding proteins
BER93_13395	SSF48576	Terpenoid synthases
BER93_13400	SSF53474	alpha/beta-Hydrolases
BER93_13405	SSF53244	MurD-like peptide ligases, peptide-binding domain
BER93_13405	SSF53623	MurD-like peptide ligases, catalytic domain
BER93_13420	SSF50621	Alanine racemase C-terminal domain-like
BER93_13420	SSF51419	PLP-binding barrel
BER93_13420	SSF53633	Carbamate kinase-like
BER93_13420	SSF55021	ACT-like
BER93_13425	SSF54506	Diaminopimelate epimerase-like
BER93_13430	SSF54506	Diaminopimelate epimerase-like
BER93_13440	SSF82784	OsmC-like
BER93_13445	SSF53671	Aspartate/ornithine carbamoyltransferase
BER93_13450	SSF53098	Ribonuclease H-like
BER93_13455	SSF143456	VC0467-like
BER93_13465	SSF48150	DNA-glycosylase
BER93_13480	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13490	SSF51419	PLP-binding barrel
BER93_13495	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
BER93_13495	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_13500	SSF47729	IHF-like DNA-binding proteins
BER93_13520	SSF82199	SET domain
BER93_13525	SSF46785	"Winged helix" DNA-binding domain
BER93_13530	SSF101960	Stabilizer of iron transporter SufD
BER93_13535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13540	SSF101960	Stabilizer of iron transporter SufD
BER93_13545	SSF53383	PLP-dependent transferases
BER93_13550	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_13555	SSF50022	ISP domain
BER93_13560	SSF56935	Porins
BER93_13565	SSF51197	Clavaminate synthase-like
BER93_13570	SSF81901	HCP-like
BER93_13575	SSF46689	Homeodomain-like
BER93_13585	SSF143631	ApbE-like
BER93_13590	SSF51182	RmlC-like cupins
BER93_13595	SSF47781	RuvA domain 2-like
BER93_13600	SSF53187	Zn-dependent exopeptidases
BER93_13610	SSF56112	Protein kinase-like (PK-like)
BER93_13615	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_13625	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13640	SSF55326	PurM N-terminal domain-like
BER93_13640	SSF56042	PurM C-terminal domain-like
BER93_13645	SSF53328	Formyltransferase
BER93_13670	SSF55205	EPT/RTPC-like
BER93_13675	SSF82657	BolA-like
BER93_13680	SSF53697	SIS domain
BER93_13685	SSF56784	HAD-like
BER93_13700	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13710	SSF69754	Ribosome binding protein Y (YfiA homologue)
BER93_13715	SSF55804	Phoshotransferase/anion transport protein
BER93_13720	SSF53795	PEP carboxykinase-like
BER93_13720	SSF75138	HprK N-terminal domain-like
BER93_13725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13730	SSF53062	PTS system fructose IIA component-like
BER93_13735	SSF55594	HPr-like
BER93_13740	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
BER93_13740	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_13740	SSF52009	Phosphohistidine domain
BER93_13745	SSF158791	MgtE N-terminal domain-like
BER93_13745	SSF161093	MgtE membrane domain-like
BER93_13745	SSF54631	CBS-domain pair
BER93_13750	SSF46689	Homeodomain-like
BER93_13775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13780	SSF53067	Actin-like ATPase domain
BER93_13785	SSF56935	Porins
BER93_13790	SSF51445	(Trans)glycosidases
BER93_13795	SSF51445	(Trans)glycosidases
BER93_13800	SSF51445	(Trans)glycosidases
BER93_13800	SSF55545	beta-N-acetylhexosaminidase-like domain
BER93_13805	SSF49303	beta-Galactosidase/glucuronidase domain
BER93_13805	SSF49785	Galactose-binding domain-like
BER93_13805	SSF51445	(Trans)glycosidases
BER93_13810	SSF51445	(Trans)glycosidases
BER93_13810	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
BER93_13810	SSF56988	Anthrax protective antigen
BER93_13820	SSF46689	Homeodomain-like
BER93_13830	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_13850	SSF53098	Ribonuclease H-like
BER93_13855	SSF46689	Homeodomain-like
BER93_13870	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_13870	SSF63737	Leukotriene A4 hydrolase N-terminal domain
BER93_13875	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_13885	SSF117892	Band 7/SPFH domain
BER93_13890	SSF117892	Band 7/SPFH domain
BER93_13895	SSF52172	CheY-like
BER93_13900	SSF46565	Chaperone J-domain
BER93_13900	SSF49493	HSP40/DnaJ peptide-binding domain
BER93_13905	SSF49764	HSP20-like chaperones
BER93_13910	SSF52833	Thioredoxin-like
BER93_13915	SSF47240	Ferritin-like
BER93_13950	SSF53590	Nucleoside hydrolase
BER93_13955	SSF56935	Porins
BER93_13960	SSF54506	Diaminopimelate epimerase-like
BER93_13965	SSF52016	LeuD/IlvD-like
BER93_13965	SSF53732	Aconitase iron-sulfur domain
BER93_13970	SSF48256	Citrate synthase
BER93_13975	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_13980	SSF159800	PrpR receptor domain-like
BER93_13980	SSF46689	Homeodomain-like
BER93_13980	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14015	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14025	SSF56322	ADC synthase
BER93_14030	SSF53901	Thiolase-like
BER93_14035	SSF47336	ACP-like
BER93_14040	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_14045	SSF52151	FabD/lysophospholipase-like
BER93_14045	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
BER93_14050	SSF53901	Thiolase-like
BER93_14055	SSF57829	Zn-binding ribosomal proteins
BER93_14065	SSF52972	ITPase-like
BER93_14075	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_14085	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14095	SSF54001	Cysteine proteinases
BER93_14105	SSF54197	HIT-like
BER93_14110	SSF111304	Recombination protein RecR
BER93_14115	SSF82607	YbaB-like
BER93_14120	SSF48019	post-AAA+ oligomerization domain-like
BER93_14120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14135	SSF54690	Molybdopterin synthase subunit MoaE
BER93_14140	SSF54285	MoaD/ThiS
BER93_14145	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
BER93_14150	SSF102114	Radical SAM enzymes
BER93_14155	SSF56281	Metallo-hydrolase/oxidoreductase
BER93_14160	SSF56112	Protein kinase-like (PK-like)
BER93_14165	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_14180	SSF81606	PP2C-like
BER93_14185	SSF53098	Ribonuclease H-like
BER93_14190	SSF53098	Ribonuclease H-like
BER93_14195	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_14200	SSF56281	Metallo-hydrolase/oxidoreductase
BER93_14205	SSF53955	Lysozyme-like
BER93_14205	SSF54106	LysM domain
BER93_14215	SSF46946	S13-like H2TH domain
BER93_14215	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
BER93_14215	SSF81624	N-terminal domain of MutM-like DNA repair proteins
BER93_14220	SSF53474	alpha/beta-Hydrolases
BER93_14220	SSF82171	DPP6 N-terminal domain-like
BER93_14235	SSF109604	HD-domain/PDEase-like
BER93_14255	SSF89550	PHP domain-like
BER93_14260	SSF56672	DNA/RNA polymerases
BER93_14265	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14270	SSF46785	"Winged helix" DNA-binding domain
BER93_14270	SSF51306	LexA/Signal peptidase
BER93_14305	SSF47741	CO dehydrogenase ISP C-domain like
BER93_14305	SSF54292	2Fe-2S ferredoxin-like
BER93_14310	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
BER93_14310	SSF56176	FAD-binding/transporter-associated domain-like
BER93_14315	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
BER93_14315	SSF56003	Molybdenum cofactor-binding domain
BER93_14320	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_14355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14390	SSF102735	Trigger factor ribosome-binding domain
BER93_14390	SSF109998	Triger factor/SurA peptide-binding domain-like
BER93_14390	SSF54534	FKBP-like
BER93_14395	SSF52096	ClpP/crotonase
BER93_14400	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14400	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
BER93_14405	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14405	SSF54211	Ribosomal protein S5 domain 2-like
BER93_14405	SSF88697	PUA domain-like
BER93_14410	SSF47729	IHF-like DNA-binding proteins
BER93_14430	SSF109998	Triger factor/SurA peptide-binding domain-like
BER93_14430	SSF54534	FKBP-like
BER93_14455	SSF102114	Radical SAM enzymes
BER93_14460	SSF48452	TPR-like
BER93_14465	SSF103088	OmpA-like
BER93_14470	SSF52964	TolB, N-terminal domain
BER93_14470	SSF69304	Tricorn protease N-terminal domain
BER93_14475	SSF74653	TolA/TonB C-terminal domain
BER93_14490	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_14495	SSF46785	"Winged helix" DNA-binding domain
BER93_14495	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14505	SSF46929	DNA helicase RuvA subunit, C-terminal domain
BER93_14505	SSF47781	RuvA domain 2-like
BER93_14505	SSF50249	Nucleic acid-binding proteins
BER93_14510	SSF53098	Ribonuclease H-like
BER93_14515	SSF75625	YebC-like
BER93_14520	SSF53474	alpha/beta-Hydrolases
BER93_14525	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_14530	SSF50249	Nucleic acid-binding proteins
BER93_14530	SSF55261	GAD domain-like
BER93_14530	SSF55681	Class II aaRS and biotin synthetases
BER93_14545	SSF47090	PGBD-like
BER93_14545	SSF53955	Lysozyme-like
BER93_14550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14555	SSF56935	Porins
BER93_14570	SSF56935	Porins
BER93_14575	SSF56935	Porins
BER93_14580	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_14600	SSF51556	Metallo-dependent hydrolases
BER93_14620	SSF158472	HAMP domain-like
BER93_14620	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
BER93_14630	SSF53474	alpha/beta-Hydrolases
BER93_14635	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_14635	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
BER93_14645	SSF50494	Trypsin-like serine proteases
BER93_14670	SSF52440	PreATP-grasp domain
BER93_14670	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_14710	SSF50475	FMN-binding split barrel
BER93_14715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14720	SSF56796	Dehydroquinate synthase-like
BER93_14725	SSF142921	WGR domain-like
BER93_14730	SSF51726	UROD/MetE-like
BER93_14735	SSF103473	MFS general substrate transporter
BER93_14745	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_14745	SSF52172	CheY-like
BER93_14745	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_14745	SSF63829	Calcium-dependent phosphotriesterase
BER93_14750	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_14750	SSF52172	CheY-like
BER93_14750	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_14750	SSF63829	Calcium-dependent phosphotriesterase
BER93_14770	SSF52172	CheY-like
BER93_14775	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_14775	SSF55785	PYP-like sensor domain (PAS domain)
BER93_14775	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_14790	SSF55781	GAF domain-like
BER93_14805	SSF46689	Homeodomain-like
BER93_14805	SSF48452	TPR-like
BER93_14810	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_14810	SSF52172	CheY-like
BER93_14820	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14820	SSF54211	Ribosomal protein S5 domain 2-like
BER93_14825	SSF50156	PDZ domain-like
BER93_14835	SSF81452	Cytochrome c oxidase subunit III-like
BER93_14840	SSF81442	Cytochrome c oxidase subunit I-like
BER93_14845	SSF49503	Cupredoxins
BER93_14845	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
BER93_14865	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
BER93_14865	SSF50677	ValRS/IleRS/LeuRS editing domain
BER93_14865	SSF52374	Nucleotidylyl transferase
BER93_14870	SSF52374	Nucleotidylyl transferase
BER93_14870	SSF82114	Riboflavin kinase-like
BER93_14880	SSF46992	Ribosomal protein S20
BER93_14885	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14885	SSF82051	Obg GTP-binding protein N-terminal domain
BER93_14890	SSF110324	Ribosomal L27 protein-like
BER93_14895	SSF141091	L21p-like
BER93_14900	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_14905	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_14910	SSF110087	DR1885-like metal-binding protein
BER93_14915	SSF52096	ClpP/crotonase
BER93_14920	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_14940	SSF47473	EF-hand
BER93_14945	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_14950	SSF56219	DNase I-like
BER93_14970	SSF46689	Homeodomain-like
BER93_14975	SSF51246	Rudiment single hybrid motif
BER93_14975	SSF52440	PreATP-grasp domain
BER93_14975	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_14980	SSF117892	Band 7/SPFH domain
BER93_14990	SSF47598	Ribbon-helix-helix
BER93_15000	SSF55166	Hedgehog/DD-peptidase
BER93_15005	SSF48150	DNA-glycosylase
BER93_15015	SSF55961	Bet v1-like
BER93_15020	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_15020	SSF52172	CheY-like
BER93_15025	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_15030	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_15035	SSF63848	Cell-division inhibitor MinC, C-terminal domain
BER93_15040	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15045	SSF55229	Cell division protein MinE topological specificity domain
BER93_15055	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_15055	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_15060	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_15060	SSF52172	CheY-like
BER93_15070	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
BER93_15075	SSF53649	Alkaline phosphatase-like
BER93_15095	SSF53383	PLP-dependent transferases
BER93_15100	SSF52317	Class I glutamine amidotransferase-like
BER93_15100	SSF56634	Heme-dependent catalase-like
BER93_15110	SSF46689	Homeodomain-like
BER93_15110	SSF55785	PYP-like sensor domain (PAS domain)
BER93_15150	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_15155	SSF56935	Porins
BER93_15160	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_15170	SSF103473	MFS general substrate transporter
BER93_15180	SSF50621	Alanine racemase C-terminal domain-like
BER93_15180	SSF51419	PLP-binding barrel
BER93_15185	SSF56935	Porins
BER93_15195	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15195	SSF81923	Double Clp-N motif
BER93_15250	SSF69255	gp5 N-terminal domain-like
BER93_15250	SSF69279	Phage tail proteins
BER93_15255	SSF53098	Ribonuclease H-like
BER93_15260	SSF46689	Homeodomain-like
BER93_15285	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_15320	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
BER93_15325	SSF69118	AhpD-like
BER93_15330	SSF52833	Thioredoxin-like
BER93_15340	SSF48452	TPR-like
BER93_15345	SSF46894	C-terminal effector domain of the bipartite response regulators
BER93_15345	SSF52172	CheY-like
BER93_15350	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_15350	SSF55785	PYP-like sensor domain (PAS domain)
BER93_15350	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_15355	SSF140356	PPK N-terminal domain-like
BER93_15355	SSF143724	PHP14-like
BER93_15355	SSF56024	Phospholipase D/nuclease
BER93_15360	SSF109604	HD-domain/PDEase-like
BER93_15360	SSF53067	Actin-like ATPase domain
BER93_15370	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
BER93_15375	SSF56300	Metallo-dependent phosphatases
BER93_15385	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_15395	SSF47240	Ferritin-like
BER93_15400	SSF53271	PRTase-like
BER93_15400	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_15410	SSF110997	Sporulation related repeat
BER93_15415	SSF53244	MurD-like peptide ligases, peptide-binding domain
BER93_15415	SSF53623	MurD-like peptide ligases, catalytic domain
BER93_15420	SSF52058	L domain-like
BER93_15440	SSF48208	Six-hairpin glycosidases
BER93_15445	SSF48208	Six-hairpin glycosidases
BER93_15450	SSF49785	Galactose-binding domain-like
BER93_15450	SSF51445	(Trans)glycosidases
BER93_15465	SSF56112	Protein kinase-like (PK-like)
BER93_15490	SSF116734	DNA methylase specificity domain
BER93_15495	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_15510	SSF116734	DNA methylase specificity domain
BER93_15515	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15535	SSF46689	Homeodomain-like
BER93_15545	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_15550	SSF102220	DNA polymerase III psi subunit
BER93_15565	SSF52954	Class II aaRS ABD-related
BER93_15565	SSF55681	Class II aaRS and biotin synthetases
BER93_15565	SSF55826	YbaK/ProRS associated domain
BER93_15570	SSF81273	H-NS histone-like proteins
BER93_15585	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15595	SSF159594	XCC0632-like
BER93_15605	SSF51905	FAD/NAD(P)-binding domain
BER93_15605	SSF54373	FAD-linked reductases, C-terminal domain
BER93_15605	SSF54862	4Fe-4S ferredoxins
BER93_15610	SSF56784	HAD-like
BER93_15615	SSF100950	NagB/RpiA/CoA transferase-like
BER93_15620	SSF100950	NagB/RpiA/CoA transferase-like
BER93_15625	SSF53738	Phosphoglucomutase, first 3 domains
BER93_15625	SSF55957	Phosphoglucomutase, C-terminal domain
BER93_15630	SSF51182	RmlC-like cupins
BER93_15630	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_15635	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_15640	SSF51182	RmlC-like cupins
BER93_15645	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_15650	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_15655	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_15660	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_15660	SSF52467	DHS-like NAD/FAD-binding domain
BER93_15665	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_15670	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_15690	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_15695	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_15705	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_15710	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_15715	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_15715	SSF56112	Protein kinase-like (PK-like)
BER93_15720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15730	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_15735	SSF53383	PLP-dependent transferases
BER93_15740	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_15740	SSF54631	CBS-domain pair
BER93_15750	SSF103088	OmpA-like
BER93_15760	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15770	SSF47616	GST C-terminal domain-like
BER93_15770	SSF52833	Thioredoxin-like
BER93_15775	SSF56529	FAH
BER93_15780	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15785	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
BER93_15795	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15800	SSF55781	GAF domain-like
BER93_15825	SSF56784	HAD-like
BER93_15830	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
BER93_15830	SSF56672	DNA/RNA polymerases
BER93_15840	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_15845	SSF53901	Thiolase-like
BER93_15855	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_15860	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_15870	SSF49503	Cupredoxins
BER93_15880	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
BER93_15890	SSF53697	SIS domain
BER93_15890	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_15905	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_15910	SSF51126	Pectin lyase-like
BER93_15915	SSF51161	Trimeric LpxA-like enzymes
BER93_15915	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_15925	SSF48600	Chorismate mutase II
BER93_15930	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
BER93_15930	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
BER93_15935	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
BER93_15935	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
BER93_15935	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15940	SSF52943	ATP synthase (F1-ATPase), gamma subunit
BER93_15945	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
BER93_15945	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
BER93_15945	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_15950	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
BER93_15955	SSF81573	F1F0 ATP synthase subunit B, membrane domain
BER93_15960	SSF81333	F1F0 ATP synthase subunit C
BER93_15965	SSF81336	F1F0 ATP synthase subunit A
BER93_15980	SSF51230	Single hybrid motif
BER93_15980	SSF51905	FAD/NAD(P)-binding domain
BER93_15980	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
BER93_16000	SSF52141	Uracil-DNA glycosylase-like
BER93_16005	SSF56925	OMPA-like
BER93_16015	SSF53850	Periplasmic binding protein-like II
BER93_16020	SSF161098	MetI-like
BER93_16025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16025	SSF55021	ACT-like
BER93_16030	SSF89963	YajQ-like
BER93_16075	SSF55120	Pseudouridine synthase
BER93_16080	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_16090	SSF50952	Soluble quinoprotein glucose dehydrogenase
BER93_16100	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_16100	SSF52172	CheY-like
BER93_16100	SSF55785	PYP-like sensor domain (PAS domain)
BER93_16100	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_16120	SSF50621	Alanine racemase C-terminal domain-like
BER93_16120	SSF51419	PLP-binding barrel
BER93_16125	SSF51905	FAD/NAD(P)-binding domain
BER93_16125	SSF54373	FAD-linked reductases, C-terminal domain
BER93_16140	SSF51316	Mss4-like
BER93_16150	SSF103088	OmpA-like
BER93_16165	SSF55103	FAD-linked oxidases, C-terminal domain
BER93_16220	SSF81301	Nucleotidyltransferase
BER93_16220	SSF81891	Poly A polymerase C-terminal region-like
BER93_16230	SSF48435	Bacterial muramidases
BER93_16230	SSF53955	Lysozyme-like
BER93_16235	SSF48371	ARM repeat
BER93_16250	SSF53098	Ribonuclease H-like
BER93_16305	SSF52304	Type II 3-dehydroquinate dehydratase
BER93_16310	SSF51230	Single hybrid motif
BER93_16320	SSF51246	Rudiment single hybrid motif
BER93_16320	SSF52440	PreATP-grasp domain
BER93_16320	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_16325	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_16335	SSF47413	lambda repressor-like DNA-binding domains
BER93_16345	SSF46689	Homeodomain-like
BER93_16350	SSF69349	Phage fibre proteins
BER93_16355	SSF52335	Methylglyoxal synthase-like
BER93_16355	SSF53927	Cytidine deaminase-like
BER93_16360	SSF51246	Rudiment single hybrid motif
BER93_16360	SSF52440	PreATP-grasp domain
BER93_16360	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_16370	SSF103473	MFS general substrate transporter
BER93_16385	SSF103473	MFS general substrate transporter
BER93_16385	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
BER93_16405	SSF55811	Nudix
BER93_16410	SSF56349	DNA breaking-rejoining enzymes
BER93_16425	SSF46689	Homeodomain-like
BER93_16430	SSF53098	Ribonuclease H-like
BER93_16440	SSF56954	Outer membrane efflux proteins (OEP)
BER93_16460	SSF51726	UROD/MetE-like
BER93_16475	SSF46785	"Winged helix" DNA-binding domain
BER93_16480	SSF143975	IlvD/EDD N-terminal domain-like
BER93_16480	SSF52016	LeuD/IlvD-like
BER93_16485	SSF51161	Trimeric LpxA-like enzymes
BER93_16500	SSF46689	Homeodomain-like
BER93_16505	SSF53098	Ribonuclease H-like
BER93_16520	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_16525	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_16525	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
BER93_16535	SSF53328	Formyltransferase
BER93_16535	SSF55021	ACT-like
BER93_16540	SSF51395	FMN-linked oxidoreductases
BER93_16545	SSF52467	DHS-like NAD/FAD-binding domain
BER93_16555	SSF103473	MFS general substrate transporter
BER93_16560	SSF51556	Metallo-dependent hydrolases
BER93_16575	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16595	SSF55120	Pseudouridine synthase
BER93_16600	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_16605	SSF51430	NAD(P)-linked oxidoreductase
BER93_16610	SSF50129	GroES-like
BER93_16610	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_16615	SSF51430	NAD(P)-linked oxidoreductase
BER93_16625	SSF82784	OsmC-like
BER93_16635	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16640	SSF53474	alpha/beta-Hydrolases
BER93_16665	SSF56219	DNase I-like
BER93_16670	SSF46626	Cytochrome c
BER93_16680	SSF46689	Homeodomain-like
BER93_16680	SSF48498	Tetracyclin repressor-like, C-terminal domain
BER93_16685	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
BER93_16685	SSF56645	Acyl-CoA dehydrogenase NM domain-like
BER93_16690	SSF52096	ClpP/crotonase
BER93_16695	SSF51230	Single hybrid motif
BER93_16695	SSF51246	Rudiment single hybrid motif
BER93_16695	SSF52440	PreATP-grasp domain
BER93_16695	SSF56059	Glutathione synthetase ATP-binding domain-like
BER93_16710	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16735	SSF53098	Ribonuclease H-like
BER93_16745	SSF46689	Homeodomain-like
BER93_16755	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
BER93_16755	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
BER93_16755	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
BER93_16760	SSF111369	HlyD-like secretion proteins
BER93_16765	SSF50447	Translation proteins
BER93_16765	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
BER93_16765	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16770	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_16775	SSF52218	Flavoproteins
BER93_16775	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
BER93_16775	SSF63380	Riboflavin synthase domain-like
BER93_16780	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
BER93_16780	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
BER93_16785	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_16795	SSF56935	Porins
BER93_16805	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_16805	SSF55781	GAF domain-like
BER93_16805	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_16815	SSF46785	"Winged helix" DNA-binding domain
BER93_16815	SSF53850	Periplasmic binding protein-like II
BER93_16820	SSF53790	Tetrapyrrole methylase
BER93_16825	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_16835	SSF51569	Aldolase
BER93_16840	SSF50800	PK beta-barrel domain-like
BER93_16840	SSF51621	Phosphoenolpyruvate/pyruvate domain
BER93_16840	SSF52935	PK C-terminal domain-like
BER93_16845	SSF56784	HAD-like
BER93_16850	SSF53748	Phosphoglycerate kinase
BER93_16875	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_16880	SSF53383	PLP-dependent transferases
BER93_16885	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_16890	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16915	SSF46689	Homeodomain-like
BER93_16920	SSF53098	Ribonuclease H-like
BER93_16945	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_16945	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
BER93_16950	SSF56925	OMPA-like
BER93_16955	SSF48537	Phospholipase C/P1 nuclease
BER93_16960	SSF56281	Metallo-hydrolase/oxidoreductase
BER93_16965	SSF53850	Periplasmic binding protein-like II
BER93_16970	SSF161098	MetI-like
BER93_16975	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_16990	SSF46785	"Winged helix" DNA-binding domain
BER93_17000	SSF141523	L,D-transpeptidase catalytic domain-like
BER93_17000	SSF47090	PGBD-like
BER93_17005	SSF51261	Duplicated hybrid motif
BER93_17010	SSF56935	Porins
BER93_17015	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_17015	SSF52922	TK C-terminal domain-like
BER93_17020	SSF118215	Proton glutamate symport protein
BER93_17030	SSF48452	TPR-like
BER93_17030	SSF53300	vWA-like
BER93_17035	SSF53300	vWA-like
BER93_17050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_17115	SSF82153	FAS1 domain
BER93_17120	SSF52141	Uracil-DNA glycosylase-like
BER93_17125	SSF102114	Radical SAM enzymes
BER93_17125	SSF47781	RuvA domain 2-like
BER93_17130	SSF51430	NAD(P)-linked oxidoreductase
BER93_17135	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_17140	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_17170	SSF47240	Ferritin-like
BER93_17175	SSF47240	Ferritin-like
BER93_17180	SSF143081	BB1717-like
BER93_17190	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
BER93_17190	SSF52738	Methylesterase CheB, C-terminal domain
BER93_17190	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_17190	SSF55785	PYP-like sensor domain (PAS domain)
BER93_17195	SSF52172	CheY-like
BER93_17205	SSF46689	Homeodomain-like
BER93_17205	SSF52172	CheY-like
BER93_17205	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_17230	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_17235	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_17240	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_17245	SSF51971	Nucleotide-binding domain
BER93_17245	SSF54373	FAD-linked reductases, C-terminal domain
BER93_17250	SSF51445	(Trans)glycosidases
BER93_17255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_17255	SSF90123	ABC transporter transmembrane region
BER93_17270	SSF50129	GroES-like
BER93_17270	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_17300	SSF103088	OmpA-like
BER93_17310	SSF56935	Porins
BER93_17325	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_17355	SSF52091	SpoIIaa-like
BER93_17380	SSF46689	Homeodomain-like
BER93_17395	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_17400	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_17400	SSF52922	TK C-terminal domain-like
BER93_17420	SSF103190	Sensory domain-like
BER93_17420	SSF158472	HAMP domain-like
BER93_17420	SSF81606	PP2C-like
BER93_17425	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_17430	SSF52091	SpoIIaa-like
BER93_17445	SSF52151	FabD/lysophospholipase-like
BER93_17445	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
BER93_17460	SSF52096	ClpP/crotonase
BER93_17465	SSF52096	ClpP/crotonase
BER93_17480	SSF63380	Riboflavin synthase domain-like
BER93_17490	SSF101874	YceI-like
BER93_17495	SSF55469	FMN-dependent nitroreductase-like
BER93_17510	SSF81301	Nucleotidyltransferase
BER93_17510	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
BER93_17515	SSF51182	RmlC-like cupins
BER93_17520	SSF63829	Calcium-dependent phosphotriesterase
BER93_17530	SSF100950	NagB/RpiA/CoA transferase-like
BER93_17540	SSF51569	Aldolase
BER93_17560	SSF48592	GroEL equatorial domain-like
BER93_17560	SSF52029	GroEL apical domain-like
BER93_17560	SSF54849	GroEL-intermediate domain like
BER93_17565	SSF50129	GroES-like
BER93_17580	SSF54913	GlnB-like
BER93_17585	SSF52833	Thioredoxin-like
BER93_17585	SSF74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
BER93_17615	SSF53098	Ribonuclease H-like
BER93_17620	SSF46689	Homeodomain-like
BER93_17625	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_17630	SSF51011	Glycosyl hydrolase domain
BER93_17630	SSF51445	(Trans)glycosidases
BER93_17630	SSF81296	E set domains
BER93_17640	SSF51445	(Trans)glycosidases
BER93_17645	SSF51445	(Trans)glycosidases
BER93_17650	SSF51445	(Trans)glycosidases
BER93_17650	SSF81296	E set domains
BER93_17655	SSF51011	Glycosyl hydrolase domain
BER93_17655	SSF51445	(Trans)glycosidases
BER93_17655	SSF81296	E set domains
BER93_17660	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_17665	SSF55073	Nucleotide cyclase
BER93_17670	SSF51445	(Trans)glycosidases
BER93_17680	SSF56112	Protein kinase-like (PK-like)
BER93_17685	SSF50182	Sm-like ribonucleoproteins
BER93_17685	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
BER93_17685	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
BER93_17690	SSF69754	Ribosome binding protein Y (YfiA homologue)
BER93_17705	SSF53271	PRTase-like
BER93_17710	SSF102114	Radical SAM enzymes
BER93_17715	SSF53383	PLP-dependent transferases
BER93_17725	SSF53474	alpha/beta-Hydrolases
BER93_17740	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_17745	SSF51197	Clavaminate synthase-like
BER93_17760	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
BER93_17770	SSF51905	FAD/NAD(P)-binding domain
BER93_17785	SSF56112	Protein kinase-like (PK-like)
BER93_17795	SSF100950	NagB/RpiA/CoA transferase-like
BER93_17795	SSF46785	"Winged helix" DNA-binding domain
BER93_17800	SSF51905	FAD/NAD(P)-binding domain
BER93_17800	SSF54373	FAD-linked reductases, C-terminal domain
BER93_17805	SSF81338	Aquaporin-like
BER93_17810	SSF53067	Actin-like ATPase domain
BER93_17820	SSF46689	Homeodomain-like
BER93_17835	SSF55486	Metalloproteases ("zincins"), catalytic domain
BER93_17845	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
BER93_17850	SSF110916	Peptidyl-tRNA hydrolase domain-like
BER93_17865	SSF52833	Thioredoxin-like
BER93_17880	SSF56112	Protein kinase-like (PK-like)
BER93_17900	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_17905	SSF56801	Acetyl-CoA synthetase-like
BER93_17915	SSF53474	alpha/beta-Hydrolases
BER93_17935	SSF89360	HesB-like domain
BER93_17955	SSF141868	EAL domain-like
BER93_17955	SSF52172	CheY-like
BER93_17955	SSF55073	Nucleotide cyclase
BER93_17960	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
BER93_17960	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_17960	SSF52172	CheY-like
BER93_17960	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_17965	SSF47240	Ferritin-like
BER93_17975	SSF55811	Nudix
BER93_17990	SSF54211	Ribosomal protein S5 domain 2-like
BER93_17995	SSF52161	Ribosomal protein L13
BER93_18000	SSF47240	Ferritin-like
BER93_18010	SSF56276	S-adenosylmethionine decarboxylase
BER93_18015	SSF46785	"Winged helix" DNA-binding domain
BER93_18015	SSF51206	cAMP-binding domain-like
BER93_18020	SSF56784	HAD-like
BER93_18025	SSF51366	Ribulose-phoshate binding barrel
BER93_18030	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
BER93_18030	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
BER93_18040	SSF52317	Class I glutamine amidotransferase-like
BER93_18060	SSF53383	PLP-dependent transferases
BER93_18065	SSF53383	PLP-dependent transferases
BER93_18075	SSF52317	Class I glutamine amidotransferase-like
BER93_18085	SSF52317	Class I glutamine amidotransferase-like
BER93_18090	SSF54368	Glutamine synthetase, N-terminal domain
BER93_18090	SSF55931	Glutamine synthetase/guanido kinase
BER93_18095	SSF56322	ADC synthase
BER93_18100	SSF111331	NAD kinase/diacylglycerol kinase-like
BER93_18105	SSF55729	Acyl-CoA N-acyltransferases (Nat)
BER93_18110	SSF51366	Ribulose-phoshate binding barrel
BER93_18115	SSF56925	OMPA-like
BER93_18120	SSF46565	Chaperone J-domain
BER93_18125	SSF56104	SAICAR synthase-like
BER93_18155	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_18195	SSF56784	HAD-like
BER93_18200	SSF47473	EF-hand
BER93_18205	SSF47473	EF-hand
BER93_18220	SSF55166	Hedgehog/DD-peptidase
BER93_18225	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
BER93_18230	SSF54001	Cysteine proteinases
BER93_18235	SSF51604	Enolase C-terminal domain-like
BER93_18235	SSF54826	Enolase N-terminal domain-like
BER93_18265	SSF50952	Soluble quinoprotein glucose dehydrogenase
BER93_18270	SSF51445	(Trans)glycosidases
BER93_18270	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
BER93_18275	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
BER93_18280	SSF53067	Actin-like ATPase domain
BER93_18290	SSF89095	GatB/YqeY motif
BER93_18300	SSF117023	DNA primase DnaG, C-terminal domain
BER93_18300	SSF56731	DNA primase core
BER93_18300	SSF57783	Zinc beta-ribbon
BER93_18325	SSF52833	Thioredoxin-like
BER93_18340	SSF81452	Cytochrome c oxidase subunit III-like
BER93_18345	SSF110111	Ctag/Cox11
BER93_18350	SSF81442	Cytochrome c oxidase subunit I-like
BER93_18355	SSF49503	Cupredoxins
BER93_18355	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
BER93_18365	SSF51730	FAD-linked oxidoreductase
BER93_18365	SSF53720	ALDH-like
BER93_18365	SSF81935	N-terminal domain of bifunctional PutA protein
BER93_18370	SSF52374	Nucleotidylyl transferase
BER93_18370	SSF55174	Alpha-L RNA-binding motif
BER93_18375	SSF51261	Duplicated hybrid motif
BER93_18380	SSF53067	Actin-like ATPase domain
BER93_18390	SSF103473	MFS general substrate transporter
BER93_18400	SSF56219	DNase I-like
BER93_18405	SSF53271	PRTase-like
BER93_18415	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18420	SSF110849	ParB/Sulfiredoxin
BER93_18435	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_18440	SSF53448	Nucleotide-diphospho-sugar transferases
BER93_18455	SSF53738	Phosphoglucomutase, first 3 domains
BER93_18455	SSF55957	Phosphoglucomutase, C-terminal domain
BER93_18460	SSF51283	dUTPase-like
BER93_18465	SSF102645	CoaB-like
BER93_18465	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
BER93_18470	SSF47781	RuvA domain 2-like
BER93_18475	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
BER93_18475	SSF52374	Nucleotidylyl transferase
BER93_18475	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
BER93_18480	SSF110997	Sporulation related repeat
BER93_18485	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_18515	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
BER93_18520	SSF47336	ACP-like
BER93_18520	SSF52777	CoA-dependent acyltransferases
BER93_18520	SSF53474	alpha/beta-Hydrolases
BER93_18520	SSF56801	Acetyl-CoA synthetase-like
BER93_18530	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_18530	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_18535	SSF52172	CheY-like
BER93_18545	SSF51395	FMN-linked oxidoreductases
BER93_18560	SSF48403	Ankyrin repeat
BER93_18565	SSF56634	Heme-dependent catalase-like
BER93_18570	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18580	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_18580	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
BER93_18590	SSF52218	Flavoproteins
BER93_18590	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
BER93_18590	SSF63380	Riboflavin synthase domain-like
BER93_18595	SSF51569	Aldolase
BER93_18640	SSF54368	Glutamine synthetase, N-terminal domain
BER93_18640	SSF55931	Glutamine synthetase/guanido kinase
BER93_18645	SSF54913	GlnB-like
BER93_18650	SSF111352	Ammonium transporter
BER93_18655	SSF47384	Homodimeric domain of signal transducing histidine kinase
BER93_18655	SSF55785	PYP-like sensor domain (PAS domain)
BER93_18655	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
BER93_18660	SSF46689	Homeodomain-like
BER93_18660	SSF52172	CheY-like
BER93_18660	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18665	SSF49329	Cu,Zn superoxide dismutase-like
BER93_18670	SSF49329	Cu,Zn superoxide dismutase-like
BER93_18685	SSF48452	TPR-like
BER93_18700	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
BER93_18705	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
BER93_18710	SSF56024	Phospholipase D/nuclease
BER93_18715	SSF101874	YceI-like
BER93_18720	SSF53254	Phosphoglycerate mutase-like
BER93_18725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18745	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
BER93_18745	SSF52922	TK C-terminal domain-like
BER93_18745	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
BER93_18750	SSF46785	"Winged helix" DNA-binding domain
BER93_18755	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_18760	SSF56436	C-type lectin-like
BER93_18765	SSF53383	PLP-dependent transferases
BER93_18770	SSF161098	MetI-like
BER93_18770	SSF53850	Periplasmic binding protein-like II
BER93_18775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18780	SSF47473	EF-hand
BER93_18785	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18790	SSF46785	"Winged helix" DNA-binding domain
BER93_18790	SSF54909	Dimeric alpha+beta barrel
BER93_18795	SSF56534	Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
BER93_18800	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_18805	SSF51182	RmlC-like cupins
BER93_18815	SSF47413	lambda repressor-like DNA-binding domains
BER93_18815	SSF53822	Periplasmic binding protein-like I
BER93_18835	SSF56529	FAH
BER93_18840	SSF53474	alpha/beta-Hydrolases
BER93_18845	SSF53474	alpha/beta-Hydrolases
BER93_18850	SSF51430	NAD(P)-linked oxidoreductase
BER93_18855	SSF51011	Glycosyl hydrolase domain
BER93_18855	SSF51445	(Trans)glycosidases
BER93_18855	SSF81296	E set domains
BER93_18860	SSF51011	Glycosyl hydrolase domain
BER93_18860	SSF51445	(Trans)glycosidases
BER93_18860	SSF56112	Protein kinase-like (PK-like)
BER93_18865	SSF51445	(Trans)glycosidases
BER93_18935	SSF51445	(Trans)glycosidases
BER93_18945	SSF51445	(Trans)glycosidases
BER93_18950	SSF50129	GroES-like
BER93_18950	SSF51735	NAD(P)-binding Rossmann-fold domains
BER93_18955	SSF46548	alpha-helical ferredoxin
BER93_18955	SSF51971	Nucleotide-binding domain
BER93_18960	SSF51395	FMN-linked oxidoreductases
BER93_18960	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BER93_18960	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
BER93_18975	SSF109604	HD-domain/PDEase-like
BER93_18980	SSF55681	Class II aaRS and biotin synthetases
BER93_18985	SSF160246	EspE N-terminal domain-like
BER93_18985	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_18990	SSF52317	Class I glutamine amidotransferase-like
BER93_19020	SSF53800	Chelatase
BER93_19025	SSF53474	alpha/beta-Hydrolases
BER93_19040	SSF52402	Adenine nucleotide alpha hydrolases-like
BER93_19050	SSF47413	lambda repressor-like DNA-binding domains
BER93_19050	SSF53822	Periplasmic binding protein-like I
BER93_19060	SSF51445	(Trans)glycosidases
BER93_19080	SSF53098	Ribonuclease H-like
BER93_19085	SSF46689	Homeodomain-like
BER93_19110	SSF48613	Heme oxygenase-like
BER93_19120	SSF103473	MFS general substrate transporter
BER93_19125	SSF47090	PGBD-like
BER93_19125	SSF53955	Lysozyme-like
BER93_19125	SSF74650	Galactose mutarotase-like
BER93_19135	SSF54427	NTF2-like
BER93_19180	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
BER93_19185	SSF103473	MFS general substrate transporter
BER93_19230	SSF47413	lambda repressor-like DNA-binding domains
BER93_19235	SSF143011	RelE-like
BER93_19240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19245	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19245	SSF52980	Restriction endonuclease-like
BER93_19250	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19250	SSF52980	Restriction endonuclease-like
BER93_19255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19275	SSF52091	SpoIIaa-like
BER93_19290	SSF52833	Thioredoxin-like
BER93_19320	SSF55073	Nucleotide cyclase
BER93_19320	SSF55781	GAF domain-like
BER93_19320	SSF55785	PYP-like sensor domain (PAS domain)
BER93_19325	SSF110738	Glycerate kinase I
BER93_19340	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
BER93_19340	SSF88697	PUA domain-like
BER93_19355	SSF46689	Homeodomain-like
BER93_19365	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19375	SSF54211	Ribosomal protein S5 domain 2-like
BER93_19400	SSF110849	ParB/Sulfiredoxin
BER93_19405	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19410	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
BER93_19450	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19455	SSF101082	Typo IV secretion system protein TraC
BER93_19470	SSF54427	NTF2-like
BER93_19485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19490	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19500	SSF53955	Lysozyme-like
BER93_19510	SSF46689	Homeodomain-like
BER93_19510	SSF53041	Resolvase-like
BER93_19575	SSF47598	Ribbon-helix-helix
BER93_19585	SSF46689	Homeodomain-like
BER93_19585	SSF53041	Resolvase-like
BER93_19590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19620	SSF52540	P-loop containing nucleoside triphosphate hydrolases
BER93_19650	SSF46689	Homeodomain-like
BER93_19650	SSF53041	Resolvase-like
BER93_19680	SSF89447	AbrB/MazE/MraZ-like
BER93_19685	SSF88723	PIN domain-like
BER93_19700	SSF46689	Homeodomain-like
BER93_19700	SSF53041	Resolvase-like