XJ27_00010 SM00387 Histidine kinase-like ATPases XJ27_00010 SM00388 His Kinase A (phosphoacceptor) domain XJ27_00010 SM00448 cheY-homologous receiver domain XJ27_00050 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_00050 SM00866 XJ27_00050 XJ27_00070 SM00240 Forkhead associated domain XJ27_00090 SM00830 Chorismate mutase type II XJ27_00155 SM00530 Helix-turn-helix XRE-family like proteins XJ27_00180 SM00646 XJ27_00180 XJ27_00320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_00320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_00330 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_00335 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_00335 SM00091 PAS domain XJ27_00335 SM00387 Histidine kinase-like ATPases XJ27_00335 SM00388 His Kinase A (phosphoacceptor) domain XJ27_00335 SM00448 cheY-homologous receiver domain XJ27_00340 SM00448 cheY-homologous receiver domain XJ27_00345 SM00382 ATPases associated with a variety of cellular activities XJ27_00350 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_00350 SM00091 PAS domain XJ27_00350 SM00387 Histidine kinase-like ATPases XJ27_00350 SM00388 His Kinase A (phosphoacceptor) domain XJ27_00350 SM00448 cheY-homologous receiver domain XJ27_00400 SM00855 Phosphoglycerate mutase family XJ27_00415 SM00155 Phospholipase D. Active site motifs. XJ27_00420 SM00448 cheY-homologous receiver domain XJ27_00425 SM00138 Methyltransferase, chemotaxis proteins XJ27_00430 SM00052 Putative diguanylate phosphodiesterase XJ27_00430 SM00448 cheY-homologous receiver domain XJ27_00435 SM00260 Two component signalling adaptor domain XJ27_00440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_00440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_00445 SM00073 Histidine Phosphotransfer domain XJ27_00445 SM00260 Two component signalling adaptor domain XJ27_00445 SM00387 Histidine kinase-like ATPases XJ27_00445 SM01231 XJ27_00445 XJ27_00455 SM00487 DEAD-like helicases superfamily XJ27_00455 SM00490 helicase superfamily c-terminal domain XJ27_00455 SM00982 XJ27_00455 XJ27_00455 SM01058 CarD-like/TRCF domain XJ27_00470 SM00448 cheY-homologous receiver domain XJ27_00470 SM00862 Transcriptional regulatory protein, C terminal XJ27_00475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_00475 SM00387 Histidine kinase-like ATPases XJ27_00475 SM00388 His Kinase A (phosphoacceptor) domain XJ27_00480 SM00645 Papain family cysteine protease XJ27_00610 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_00645 SM00342 helix_turn_helix, arabinose operon control protein XJ27_00645 SM00478 endonuclease III XJ27_00645 SM01009 AlkA N-terminal domain XJ27_00695 SM00487 DEAD-like helicases superfamily XJ27_00695 SM00490 helicase superfamily c-terminal domain XJ27_00700 SM00052 Putative diguanylate phosphodiesterase XJ27_00700 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_00700 SM00091 PAS domain XJ27_00700 SM00267 diguanylate cyclase XJ27_00705 SM00363 S4 RNA-binding domain XJ27_00710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_00710 SM00267 diguanylate cyclase XJ27_00745 SM00382 ATPases associated with a variety of cellular activities XJ27_00825 SM00267 diguanylate cyclase XJ27_00835 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_00835 SM00267 diguanylate cyclase XJ27_00845 SM00528 Domain in histone-like proteins of HNS family XJ27_00855 SM01126 XJ27_00855 XJ27_00935 SM00271 DnaJ molecular chaperone homology domain XJ27_00975 SM00382 ATPases associated with a variety of cellular activities XJ27_01000 SM00861 Transketolase, pyrimidine binding domain XJ27_01010 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XJ27_01030 SM01091 Transporter associated domain XJ27_01060 SM00382 ATPases associated with a variety of cellular activities XJ27_01065 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_01080 SM00984 UDP binding domain XJ27_01100 SM00354 helix_turn _helix lactose operon repressor XJ27_01125 SM01018 B12 binding domain XJ27_01135 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XJ27_01160 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_01160 SM00357 Cold shock protein domain XJ27_01160 SM00955 XJ27_01160 XJ27_01170 SM00967 RNA 2'-O ribose methyltransferase substrate binding XJ27_01175 SM00267 diguanylate cyclase XJ27_01180 SM00479 XJ27_01180 XJ27_01195 SM00382 ATPases associated with a variety of cellular activities XJ27_01230 SM00947 Carbonic anhydrase XJ27_01250 SM00478 endonuclease III XJ27_01250 SM00525 XJ27_01250 XJ27_01275 SM00450 Rhodanese Homology Domain XJ27_01285 SM00644 XJ27_01285 XJ27_01305 SM00382 ATPases associated with a variety of cellular activities XJ27_01310 SM00981 XJ27_01310 XJ27_01340 SM00479 XJ27_01340 XJ27_01365 SM00947 Carbonic anhydrase XJ27_01410 SM00968 SMC proteins Flexible Hinge Domain XJ27_01415 SM00771 ZipA, C-terminal domain (FtsZ-binding) XJ27_01425 SM00292 breast cancer carboxy-terminal domain XJ27_01425 SM00532 Ligase N family XJ27_01445 SM00434 DNA Topoisomerase IV XJ27_01520 SM00671 Sel1-like repeats. XJ27_01525 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XJ27_01555 SM00382 ATPases associated with a variety of cellular activities XJ27_01570 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain XJ27_01595 SM00411 bacterial (prokaryotic) histone like domain XJ27_01635 SM00732 Likely ribonuclease with RNase H fold. XJ27_01705 SM00267 diguanylate cyclase XJ27_01715 SM01092 CO dehydrogenase flavoprotein C-terminal domain XJ27_01720 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XJ27_01750 SM00248 ankyrin repeats XJ27_01780 SM00028 Tetratricopeptide repeats XJ27_01910 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_01920 SM00382 ATPases associated with a variety of cellular activities XJ27_01955 SM01091 Transporter associated domain XJ27_01980 SM00387 Histidine kinase-like ATPases XJ27_01980 SM00433 TopoisomeraseII XJ27_02005 SM01192 XJ27_02005 XJ27_02005 SM01193 XJ27_02005 XJ27_02030 SM00463 Small MutS-related domain XJ27_02050 SM00257 Lysin motif XJ27_02060 SM01103 XJ27_02060 XJ27_02070 SM00382 ATPases associated with a variety of cellular activities XJ27_02115 SM00382 ATPases associated with a variety of cellular activities XJ27_02125 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XJ27_02140 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_02140 SM00091 PAS domain XJ27_02140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_02185 SM00670 Large family of predicted nucleotide-binding domains XJ27_02205 SM01130 XJ27_02205 XJ27_02230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XJ27_02270 SM00758 XJ27_02270 XJ27_02310 SM00646 XJ27_02310 XJ27_02380 SM00052 Putative diguanylate phosphodiesterase XJ27_02380 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_02380 SM00267 diguanylate cyclase XJ27_02390 SM00448 cheY-homologous receiver domain XJ27_02395 SM00387 Histidine kinase-like ATPases XJ27_02405 SM00014 Acid phosphatase homologues XJ27_02585 SM00028 Tetratricopeptide repeats XJ27_02635 SM00100 Cyclic nucleotide-monophosphate binding domain XJ27_02635 SM00419 helix_turn_helix, cAMP Regulatory protein XJ27_02720 SM01007 Class II Aldolase and Adducin N-terminal domain XJ27_02780 SM00841 Elongation factor P, C-terminal XJ27_02780 SM01185 XJ27_02780 XJ27_02800 SM00899 XJ27_02800 XJ27_02830 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XJ27_02840 SM00851 MGS-like domain XJ27_02840 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XJ27_02870 SM00850 LytTr DNA-binding domain XJ27_02875 SM00937 XJ27_02875 XJ27_02885 SM00448 cheY-homologous receiver domain XJ27_02885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XJ27_02895 SM00073 Histidine Phosphotransfer domain XJ27_02895 SM00387 Histidine kinase-like ATPases XJ27_02895 SM00388 His Kinase A (phosphoacceptor) domain XJ27_02895 SM00448 cheY-homologous receiver domain XJ27_02920 SM00966 SpoVT / AbrB like domain XJ27_02945 SM00052 Putative diguanylate phosphodiesterase XJ27_02945 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_02945 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_02945 SM00091 PAS domain XJ27_02945 SM00267 diguanylate cyclase XJ27_02950 SM00448 cheY-homologous receiver domain XJ27_02960 SM00138 Methyltransferase, chemotaxis proteins XJ27_02965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_02965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_02975 SM00260 Two component signalling adaptor domain XJ27_02985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_02985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_02990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_02990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_02995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_02995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_03000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_03000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_03005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_03005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_03010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_03010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_03015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_03015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_03020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_03020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_03020 SM01049 XJ27_03020 XJ27_03035 SM00073 Histidine Phosphotransfer domain XJ27_03035 SM00260 Two component signalling adaptor domain XJ27_03035 SM00387 Histidine kinase-like ATPases XJ27_03035 SM01231 XJ27_03035 XJ27_03040 SM00448 cheY-homologous receiver domain XJ27_03050 SM00260 Two component signalling adaptor domain XJ27_03075 SM00530 Helix-turn-helix XRE-family like proteins XJ27_03080 SM00073 Histidine Phosphotransfer domain XJ27_03080 SM00260 Two component signalling adaptor domain XJ27_03080 SM00387 Histidine kinase-like ATPases XJ27_03080 SM01231 XJ27_03080 XJ27_03090 SM00448 cheY-homologous receiver domain XJ27_03105 SM00382 ATPases associated with a variety of cellular activities XJ27_03105 SM00962 SRP54-type protein, GTPase domain XJ27_03125 SM00267 diguanylate cyclase XJ27_03130 SM00267 diguanylate cyclase XJ27_03180 SM00382 ATPases associated with a variety of cellular activities XJ27_03235 SM00822 XJ27_03235 XJ27_03240 SM00822 XJ27_03240 XJ27_03260 SM00382 ATPases associated with a variety of cellular activities XJ27_03265 SM00448 cheY-homologous receiver domain XJ27_03275 SM00421 helix_turn_helix, Lux Regulon XJ27_03275 SM00448 cheY-homologous receiver domain XJ27_03315 SM00047 Lysozyme subfamily 2 XJ27_03360 SM00260 Two component signalling adaptor domain XJ27_03360 SM00448 cheY-homologous receiver domain XJ27_03365 SM00858 XJ27_03365 XJ27_03380 SM00387 Histidine kinase-like ATPases XJ27_03385 SM00052 Putative diguanylate phosphodiesterase XJ27_03385 SM00267 diguanylate cyclase XJ27_03385 SM00448 cheY-homologous receiver domain XJ27_03390 SM00091 PAS domain XJ27_03390 SM00387 Histidine kinase-like ATPases XJ27_03395 SM00052 Putative diguanylate phosphodiesterase XJ27_03395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_03395 SM00091 PAS domain XJ27_03395 SM00267 diguanylate cyclase XJ27_03425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_03450 SM00382 ATPases associated with a variety of cellular activities XJ27_03450 SM01086 C-terminal, D2-small domain, of ClpB protein XJ27_03455 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_03475 SM00382 ATPases associated with a variety of cellular activities XJ27_03475 SM00843 XJ27_03475 XJ27_03490 SM00382 ATPases associated with a variety of cellular activities XJ27_03515 SM00562 XJ27_03515 XJ27_03525 SM00028 Tetratricopeptide repeats XJ27_03540 SM00564 beta-propeller repeat XJ27_03545 SM00382 ATPases associated with a variety of cellular activities XJ27_03550 SM00852 Probable molybdopterin binding domain XJ27_03555 SM00450 Rhodanese Homology Domain XJ27_03575 SM00852 Probable molybdopterin binding domain XJ27_03595 SM00448 cheY-homologous receiver domain XJ27_03595 SM01012 XJ27_03595 XJ27_03620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XJ27_03635 SM00858 XJ27_03635 XJ27_03685 SM00052 Putative diguanylate phosphodiesterase XJ27_03690 SM00869 Autotransporter beta-domain XJ27_03695 SM00869 Autotransporter beta-domain XJ27_03710 SM01126 XJ27_03710 XJ27_03715 SM00448 cheY-homologous receiver domain XJ27_03715 SM00862 Transcriptional regulatory protein, C terminal XJ27_03730 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_03755 SM00448 cheY-homologous receiver domain XJ27_03760 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_03760 SM00387 Histidine kinase-like ATPases XJ27_03795 SM00091 PAS domain XJ27_03795 SM00387 Histidine kinase-like ATPases XJ27_03800 SM00421 helix_turn_helix, Lux Regulon XJ27_03800 SM00448 cheY-homologous receiver domain XJ27_04065 SM00363 S4 RNA-binding domain XJ27_04070 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_04075 SM00421 helix_turn_helix, Lux Regulon XJ27_04075 SM00448 cheY-homologous receiver domain XJ27_04080 SM00450 Rhodanese Homology Domain XJ27_04100 SM00984 UDP binding domain XJ27_04140 SM00382 ATPases associated with a variety of cellular activities XJ27_04195 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XJ27_04195 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XJ27_04195 SM00493 XJ27_04195 XJ27_04280 SM00487 DEAD-like helicases superfamily XJ27_04330 SM00953 XJ27_04330 XJ27_04405 SM01126 XJ27_04405 XJ27_04500 SM00953 XJ27_04500 XJ27_04625 SM00530 Helix-turn-helix XRE-family like proteins XJ27_04650 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XJ27_04650 SM00465 GIY-YIG type nucleases (URI domain) XJ27_04660 SM00226 Low molecular weight phosphatase family XJ27_04675 SM00382 ATPases associated with a variety of cellular activities XJ27_04690 SM00849 Metallo-beta-lactamase superfamily XJ27_04700 SM00382 ATPases associated with a variety of cellular activities XJ27_04750 SM00382 ATPases associated with a variety of cellular activities XJ27_04870 SM00448 cheY-homologous receiver domain XJ27_04875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_04875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_04875 SM00091 PAS domain XJ27_04875 SM00387 Histidine kinase-like ATPases XJ27_04875 SM00388 His Kinase A (phosphoacceptor) domain XJ27_04875 SM00448 cheY-homologous receiver domain XJ27_04880 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_04880 SM00732 Likely ribonuclease with RNase H fold. XJ27_04950 SM00479 XJ27_04950 XJ27_04960 SM00529 Helix-turn-helix diphteria tox regulatory element XJ27_04975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_05005 SM01126 XJ27_05005 XJ27_05030 SM00116 Domain in cystathionine beta-synthase and other proteins. XJ27_05030 SM01240 XJ27_05030 XJ27_05055 SM00822 XJ27_05055 XJ27_05075 SM00411 bacterial (prokaryotic) histone like domain XJ27_05080 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_05155 SM00354 helix_turn _helix lactose operon repressor XJ27_05180 SM00363 S4 RNA-binding domain XJ27_05205 SM00382 ATPases associated with a variety of cellular activities XJ27_05265 SM00382 ATPases associated with a variety of cellular activities XJ27_05270 SM00382 ATPases associated with a variety of cellular activities XJ27_05300 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XJ27_05315 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XJ27_05335 SM00859 Semialdehyde dehydrogenase, NAD binding domain XJ27_05370 SM00840 XJ27_05370 XJ27_05390 SM01234 XJ27_05390 XJ27_05440 SM00656 XJ27_05440 XJ27_05485 SM00841 Elongation factor P, C-terminal XJ27_05485 SM01185 XJ27_05485 XJ27_05495 SM00052 Putative diguanylate phosphodiesterase XJ27_05495 SM00267 diguanylate cyclase XJ27_05495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_05580 SM00116 Domain in cystathionine beta-synthase and other proteins. XJ27_05600 SM00382 ATPases associated with a variety of cellular activities XJ27_05645 SM00924 MgtE intracellular N domain XJ27_05675 SM00656 XJ27_05675 XJ27_05685 SM00421 helix_turn_helix, Lux Regulon XJ27_05705 SM00849 Metallo-beta-lactamase superfamily XJ27_05715 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XJ27_05740 SM00422 helix_turn_helix, mercury resistance XJ27_05815 SM00382 ATPases associated with a variety of cellular activities XJ27_05820 SM00382 ATPases associated with a variety of cellular activities XJ27_05820 SM00487 DEAD-like helicases superfamily XJ27_05820 SM00490 helicase superfamily c-terminal domain XJ27_05845 SM00357 Cold shock protein domain XJ27_05855 SM01322 XJ27_05855 XJ27_05865 SM00052 Putative diguanylate phosphodiesterase XJ27_05865 SM00267 diguanylate cyclase XJ27_05880 SM00822 XJ27_05880 XJ27_05900 SM00853 MutL C terminal dimerisation domain XJ27_05900 SM01340 XJ27_05900 XJ27_05905 SM00646 XJ27_05905 XJ27_05940 SM00474 3'-5' exonuclease XJ27_05945 SM00528 Domain in histone-like proteins of HNS family XJ27_05955 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_05955 SM00267 diguanylate cyclase XJ27_05960 SM00260 Two component signalling adaptor domain XJ27_05965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_05965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_05975 SM00487 DEAD-like helicases superfamily XJ27_05975 SM00490 helicase superfamily c-terminal domain XJ27_06025 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_06050 SM00116 Domain in cystathionine beta-synthase and other proteins. XJ27_06050 SM01091 Transporter associated domain XJ27_06095 SM00382 ATPases associated with a variety of cellular activities XJ27_06125 SM01230 XJ27_06125 XJ27_06135 SM01230 XJ27_06135 XJ27_06145 SM00267 diguanylate cyclase XJ27_06145 SM00448 cheY-homologous receiver domain XJ27_06190 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_06190 SM00091 PAS domain XJ27_06190 SM00387 Histidine kinase-like ATPases XJ27_06190 SM00388 His Kinase A (phosphoacceptor) domain XJ27_06190 SM00448 cheY-homologous receiver domain XJ27_06190 SM01079 XJ27_06190 XJ27_06195 SM00448 cheY-homologous receiver domain XJ27_06195 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XJ27_06210 SM00829 Enoylreductase XJ27_06245 SM00829 Enoylreductase XJ27_06300 SM00354 helix_turn _helix lactose operon repressor XJ27_06395 SM01323 XJ27_06395 XJ27_06410 SM00344 helix_turn_helix ASNC type XJ27_06485 SM00387 Histidine kinase-like ATPases XJ27_06505 SM01126 XJ27_06505 XJ27_06550 SM00944 Pro-kumamolisin, activation domain XJ27_06605 SM01130 XJ27_06605 XJ27_06630 SM00342 helix_turn_helix, arabinose operon control protein XJ27_06635 SM00382 ATPases associated with a variety of cellular activities XJ27_06635 SM00962 SRP54-type protein, GTPase domain XJ27_06635 SM00963 SRP54-type protein, helical bundle domain XJ27_06640 SM00478 endonuclease III XJ27_06700 SM00507 HNH nucleases XJ27_06705 SM00861 Transketolase, pyrimidine binding domain XJ27_06730 SM00849 Metallo-beta-lactamase superfamily XJ27_06815 SM00422 helix_turn_helix, mercury resistance XJ27_06820 SM00411 bacterial (prokaryotic) histone like domain XJ27_06825 SM00873 B3/4 domain XJ27_06825 SM00874 tRNA synthetase B5 domain XJ27_06825 SM00896 Ferredoxin-fold anticodon binding domain XJ27_06850 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XJ27_06950 SM00487 DEAD-like helicases superfamily XJ27_06950 SM00490 helicase superfamily c-terminal domain XJ27_07030 SM01001 AIR carboxylase XJ27_07050 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_07050 SM00322 K homology RNA-binding domain XJ27_07055 SM01387 XJ27_07055 XJ27_07075 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_07075 SM00322 K homology RNA-binding domain XJ27_07125 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XJ27_07130 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XJ27_07175 SM00822 XJ27_07175 XJ27_07195 SM00052 Putative diguanylate phosphodiesterase XJ27_07195 SM00267 diguanylate cyclase XJ27_07195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_07260 SM00859 Semialdehyde dehydrogenase, NAD binding domain XJ27_07295 SM00257 Lysin motif XJ27_07335 SM01217 XJ27_07335 XJ27_07355 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_07425 SM01160 XJ27_07425 XJ27_07475 SM00098 Alkaline phosphatase homologues XJ27_07480 SM00977 TilS substrate C-terminal domain XJ27_07495 SM01351 XJ27_07495 XJ27_07530 SM00316 Ribosomal protein S1-like RNA-binding domain XJ27_07670 SM00357 Cold shock protein domain XJ27_07690 SM00947 Carbonic anhydrase XJ27_07710 SM00382 ATPases associated with a variety of cellular activities XJ27_07730 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_07760 SM00631 XJ27_07760 XJ27_07765 SM01217 XJ27_07765 XJ27_07795 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_07805 SM00434 DNA Topoisomerase IV XJ27_07830 SM00710 Parallel beta-helix repeats XJ27_07830 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses XJ27_07860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XJ27_07870 SM00972 Spore Coat Protein U domain XJ27_07885 SM00972 Spore Coat Protein U domain XJ27_07910 SM00267 diguanylate cyclase XJ27_07940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XJ27_07980 SM00481 DNA polymerase alpha chain like domain XJ27_08055 SM00342 helix_turn_helix, arabinose operon control protein XJ27_08080 SM00382 ATPases associated with a variety of cellular activities XJ27_08300 SM00671 Sel1-like repeats. XJ27_08310 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XJ27_08315 SM00869 Autotransporter beta-domain XJ27_08335 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_08335 SM00267 diguanylate cyclase XJ27_08360 SM00487 DEAD-like helicases superfamily XJ27_08360 SM00490 helicase superfamily c-terminal domain XJ27_08375 SM00357 Cold shock protein domain XJ27_08410 SM01118 XJ27_08410 XJ27_08430 SM00448 cheY-homologous receiver domain XJ27_08445 SM00358 Double-stranded RNA binding motif XJ27_08445 SM00535 Ribonuclease III family XJ27_08460 SM00838 Elongation factor G C-terminus XJ27_08465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XJ27_08490 SM00028 Tetratricopeptide repeats XJ27_08500 SM00028 Tetratricopeptide repeats XJ27_08540 SM00530 Helix-turn-helix XRE-family like proteins XJ27_08560 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XJ27_08600 SM00812 Alpha-L-fucosidase XJ27_08625 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XJ27_08625 SM00534 ATPase domain of DNA mismatch repair MUTS family XJ27_08640 SM01126 XJ27_08640 XJ27_08645 SM00363 S4 RNA-binding domain XJ27_08690 SM00382 ATPases associated with a variety of cellular activities XJ27_08690 SM00962 SRP54-type protein, GTPase domain XJ27_08690 SM00963 SRP54-type protein, helical bundle domain XJ27_08715 SM00813 Alpha-L-arabinofuranosidase C-terminus XJ27_08735 SM00448 cheY-homologous receiver domain XJ27_08740 SM00387 Histidine kinase-like ATPases XJ27_08740 SM00388 His Kinase A (phosphoacceptor) domain XJ27_08745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_08745 SM00387 Histidine kinase-like ATPases XJ27_08745 SM00388 His Kinase A (phosphoacceptor) domain XJ27_08745 SM00448 cheY-homologous receiver domain XJ27_08750 SM00138 Methyltransferase, chemotaxis proteins XJ27_08760 SM00387 Histidine kinase-like ATPases XJ27_08760 SM00388 His Kinase A (phosphoacceptor) domain XJ27_08760 SM00448 cheY-homologous receiver domain XJ27_08785 SM00387 Histidine kinase-like ATPases XJ27_08785 SM00388 His Kinase A (phosphoacceptor) domain XJ27_08785 SM00448 cheY-homologous receiver domain XJ27_08790 SM00387 Histidine kinase-like ATPases XJ27_08790 SM00388 His Kinase A (phosphoacceptor) domain XJ27_08830 SM00342 helix_turn_helix, arabinose operon control protein XJ27_08835 SM00862 Transcriptional regulatory protein, C terminal XJ27_08845 SM00382 ATPases associated with a variety of cellular activities XJ27_08850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XJ27_08895 SM00904 Riboflavin kinase XJ27_08990 SM00244 prohibitin homologues XJ27_09015 SM00478 endonuclease III XJ27_09030 SM00421 helix_turn_helix, Lux Regulon XJ27_09030 SM00448 cheY-homologous receiver domain XJ27_09065 SM00387 Histidine kinase-like ATPases XJ27_09065 SM00388 His Kinase A (phosphoacceptor) domain XJ27_09070 SM00448 cheY-homologous receiver domain XJ27_09070 SM00862 Transcriptional regulatory protein, C terminal XJ27_09130 SM01060 XJ27_09130 XJ27_09135 SM00091 PAS domain XJ27_09135 SM00342 helix_turn_helix, arabinose operon control protein XJ27_09170 SM00481 DNA polymerase alpha chain like domain XJ27_09190 SM00966 SpoVT / AbrB like domain XJ27_09200 SM00915 Jacalin-like lectin domain XJ27_09210 SM00965 Secretin and TonB N terminus short domain XJ27_09230 SM01092 CO dehydrogenase flavoprotein C-terminal domain XJ27_09235 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XJ27_09240 SM01217 XJ27_09240 XJ27_09255 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XJ27_09260 SM00052 Putative diguanylate phosphodiesterase XJ27_09315 SM00855 Phosphoglycerate mutase family XJ27_09340 SM00645 Papain family cysteine protease XJ27_09385 SM00487 DEAD-like helicases superfamily XJ27_09430 SM00788 Adenylosuccinate synthetase XJ27_09440 SM01321 XJ27_09440 XJ27_09445 SM00244 prohibitin homologues XJ27_09450 SM00244 prohibitin homologues XJ27_09455 SM00448 cheY-homologous receiver domain XJ27_09460 SM00271 DnaJ molecular chaperone homology domain XJ27_09500 SM01359 XJ27_09500 XJ27_09500 SM01360 XJ27_09500 XJ27_09535 SM00382 ATPases associated with a variety of cellular activities XJ27_09580 SM00825 Beta-ketoacyl synthase XJ27_09590 SM00822 XJ27_09590 XJ27_09595 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XJ27_09635 SM00382 ATPases associated with a variety of cellular activities XJ27_09645 SM00460 Transglutaminase/protease-like homologues XJ27_09660 SM00493 XJ27_09660 XJ27_09670 SM00382 ATPases associated with a variety of cellular activities XJ27_09700 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_09705 SM00849 Metallo-beta-lactamase superfamily XJ27_09745 SM00530 Helix-turn-helix XRE-family like proteins XJ27_09820 SM00331 Sigma factor PP2C-like phosphatases XJ27_09820 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain XJ27_09825 SM00479 XJ27_09825 XJ27_09840 SM00849 Metallo-beta-lactamase superfamily XJ27_09845 SM00257 Lysin motif XJ27_09870 SM00411 bacterial (prokaryotic) histone like domain XJ27_09875 SM00382 ATPases associated with a variety of cellular activities XJ27_09875 SM00464 Found in ATP-dependent protease La (LON) XJ27_09880 SM00382 ATPases associated with a variety of cellular activities XJ27_09880 SM00994 ClpX C4-type zinc finger XJ27_09880 SM01086 C-terminal, D2-small domain, of ClpB protein XJ27_09900 SM00387 Histidine kinase-like ATPases XJ27_10075 SM00530 Helix-turn-helix XRE-family like proteins XJ27_10205 SM01329 XJ27_10205 XJ27_10225 SM00448 cheY-homologous receiver domain XJ27_10225 SM00862 Transcriptional regulatory protein, C terminal XJ27_10230 SM00387 Histidine kinase-like ATPases XJ27_10230 SM00388 His Kinase A (phosphoacceptor) domain XJ27_10250 SM00014 Acid phosphatase homologues XJ27_10300 SM00855 Phosphoglycerate mutase family XJ27_10320 SM00829 Enoylreductase XJ27_10330 SM00382 ATPases associated with a variety of cellular activities XJ27_10375 SM00829 Enoylreductase XJ27_10410 SM00838 Elongation factor G C-terminus XJ27_10450 SM00662 RNA polymerases D XJ27_10455 SM00363 S4 RNA-binding domain XJ27_10455 SM01390 XJ27_10455 XJ27_10515 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XJ27_10520 SM01374 XJ27_10520 XJ27_10540 SM00322 K homology RNA-binding domain XJ27_10555 SM01382 XJ27_10555 XJ27_10555 SM01383 XJ27_10555 XJ27_10575 SM01403 XJ27_10575 XJ27_10585 SM00838 Elongation factor G C-terminus XJ27_10585 SM00889 Elongation factor G, domain IV XJ27_10600 SM00663 RNA polymerase I subunit A N-terminus XJ27_10625 SM00649 Ribosomal protein L11/L12 XJ27_10630 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XJ27_10630 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XJ27_10680 SM01400 XJ27_10680 XJ27_10700 SM00028 Tetratricopeptide repeats XJ27_10710 SM00937 XJ27_10710 XJ27_10715 SM00028 Tetratricopeptide repeats XJ27_10720 SM00852 Probable molybdopterin binding domain XJ27_10835 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XJ27_10835 SM00475 5'-3' exonuclease XJ27_10900 SM00421 helix_turn_helix, Lux Regulon XJ27_10905 SM00387 Histidine kinase-like ATPases XJ27_10905 SM00388 His Kinase A (phosphoacceptor) domain XJ27_10905 SM00448 cheY-homologous receiver domain XJ27_10910 SM00448 cheY-homologous receiver domain XJ27_10975 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_11010 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_11010 SM00895 XJ27_11010 XJ27_11070 SM00650 Ribosomal RNA adenine dimethylases XJ27_11105 SM00382 ATPases associated with a variety of cellular activities XJ27_11155 SM00387 Histidine kinase-like ATPases XJ27_11155 SM00388 His Kinase A (phosphoacceptor) domain XJ27_11160 SM00448 cheY-homologous receiver domain XJ27_11160 SM00862 Transcriptional regulatory protein, C terminal XJ27_11170 SM00382 ATPases associated with a variety of cellular activities XJ27_11190 SM00382 ATPases associated with a variety of cellular activities XJ27_11330 SM00996 S-adenosyl-L-homocysteine hydrolase XJ27_11330 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XJ27_11390 SM00829 Enoylreductase XJ27_11410 SM00869 Autotransporter beta-domain XJ27_11430 SM00957 SecA DEAD-like domain XJ27_11430 SM00958 SecA preprotein cross-linking domain XJ27_11450 SM00864 Tubulin/FtsZ family, GTPase domain XJ27_11450 SM00865 Tubulin/FtsZ family, C-terminal domain XJ27_11455 SM00842 Cell division protein FtsA XJ27_11565 SM00448 cheY-homologous receiver domain XJ27_11565 SM00862 Transcriptional regulatory protein, C terminal XJ27_11570 SM00387 Histidine kinase-like ATPases XJ27_11570 SM00388 His Kinase A (phosphoacceptor) domain XJ27_11595 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XJ27_11665 SM00382 ATPases associated with a variety of cellular activities XJ27_11730 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_11730 SM00866 XJ27_11730 XJ27_11810 SM00382 ATPases associated with a variety of cellular activities XJ27_11835 SM01211 XJ27_11835 XJ27_11890 SM00656 XJ27_11890 XJ27_11925 SM00528 Domain in histone-like proteins of HNS family XJ27_11940 SM00382 ATPases associated with a variety of cellular activities XJ27_11975 SM00882 Coenzyme A transferase XJ27_11980 SM00882 Coenzyme A transferase XJ27_12015 SM00893 Electron transfer flavoprotein domain XJ27_12020 SM00893 Electron transfer flavoprotein domain XJ27_12085 SM00382 ATPases associated with a variety of cellular activities XJ27_12105 SM00116 Domain in cystathionine beta-synthase and other proteins. XJ27_12140 SM00487 DEAD-like helicases superfamily XJ27_12140 SM00490 helicase superfamily c-terminal domain XJ27_12170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_12205 SM00825 Beta-ketoacyl synthase XJ27_12260 SM00100 Cyclic nucleotide-monophosphate binding domain XJ27_12260 SM00419 helix_turn_helix, cAMP Regulatory protein XJ27_12275 SM00382 ATPases associated with a variety of cellular activities XJ27_12290 SM00382 ATPases associated with a variety of cellular activities XJ27_12290 SM00448 cheY-homologous receiver domain XJ27_12295 SM00387 Histidine kinase-like ATPases XJ27_12325 SM00830 Chorismate mutase type II XJ27_12335 SM00382 ATPases associated with a variety of cellular activities XJ27_12400 SM00986 Uracil DNA glycosylase superfamily XJ27_12400 SM00987 UreE urease accessory protein, C-terminal domain XJ27_12425 SM00382 ATPases associated with a variety of cellular activities XJ27_12425 SM00930 XJ27_12425 XJ27_12480 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_12480 SM00091 PAS domain XJ27_12480 SM00387 Histidine kinase-like ATPases XJ27_12480 SM00388 His Kinase A (phosphoacceptor) domain XJ27_12480 SM00448 cheY-homologous receiver domain XJ27_12500 SM01005 Alanine racemase, C-terminal domain XJ27_12510 SM00344 helix_turn_helix ASNC type XJ27_12585 SM00382 ATPases associated with a variety of cellular activities XJ27_12610 SM01126 XJ27_12610 XJ27_12620 SM00382 ATPases associated with a variety of cellular activities XJ27_12640 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. XJ27_12645 SM00986 Uracil DNA glycosylase superfamily XJ27_12645 SM00987 UreE urease accessory protein, C-terminal domain XJ27_12650 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_12720 SM00448 cheY-homologous receiver domain XJ27_12720 SM00850 LytTr DNA-binding domain XJ27_12725 SM00387 Histidine kinase-like ATPases XJ27_12760 SM00091 PAS domain XJ27_12760 SM00138 Methyltransferase, chemotaxis proteins XJ27_12760 SM00911 HWE histidine kinase XJ27_12765 SM00448 cheY-homologous receiver domain XJ27_12775 SM00382 ATPases associated with a variety of cellular activities XJ27_12775 SM00448 cheY-homologous receiver domain XJ27_12820 SM00382 ATPases associated with a variety of cellular activities XJ27_12895 SM00382 ATPases associated with a variety of cellular activities XJ27_12900 SM00631 XJ27_12900 XJ27_12925 SM00477 DNA/RNA non-specific endonuclease XJ27_12925 SM00892 DNA/RNA non-specific endonuclease XJ27_12960 SM00342 helix_turn_helix, arabinose operon control protein XJ27_13070 SM00257 Lysin motif XJ27_13095 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XJ27_13095 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XJ27_13095 SM00493 XJ27_13095 XJ27_13145 SM00487 DEAD-like helicases superfamily XJ27_13145 SM00490 helicase superfamily c-terminal domain XJ27_13190 SM00986 Uracil DNA glycosylase superfamily XJ27_13190 SM00987 UreE urease accessory protein, C-terminal domain XJ27_13195 SM00448 cheY-homologous receiver domain XJ27_13205 SM00382 ATPases associated with a variety of cellular activities XJ27_13210 SM00487 DEAD-like helicases superfamily XJ27_13210 SM00490 helicase superfamily c-terminal domain XJ27_13220 SM00357 Cold shock protein domain XJ27_13220 SM00382 ATPases associated with a variety of cellular activities XJ27_13220 SM00959 Rho termination factor, N-terminal domain XJ27_13235 SM00421 helix_turn_helix, Lux Regulon XJ27_13255 SM00257 Lysin motif XJ27_13285 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XJ27_13295 SM00644 XJ27_13295 XJ27_13315 SM00054 EF-hand, calcium binding motif XJ27_13340 SM01150 XJ27_13340 XJ27_13385 SM01217 XJ27_13385 XJ27_13390 SM00905 Dihydroneopterin aldolase XJ27_13415 SM00400 zinc finger XJ27_13415 SM00493 XJ27_13415 XJ27_13415 SM00766 DNA primase DnaG DnaB-binding XJ27_13515 SM00363 S4 RNA-binding domain XJ27_13560 SM00470 ParB-like nuclease domain XJ27_13580 SM01259 XJ27_13580 XJ27_13610 SM00836 DALR anticodon binding domain XJ27_13610 SM01016 Arginyl tRNA synthetase N terminal dom XJ27_13635 SM00823 Phosphopantetheine attachment site XJ27_13635 SM00824 Thioesterase XJ27_13670 SM00938 Nitrogen regulatory protein P-II XJ27_13680 SM00382 ATPases associated with a variety of cellular activities XJ27_13695 SM00052 Putative diguanylate phosphodiesterase XJ27_13755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_13755 SM00387 Histidine kinase-like ATPases XJ27_13755 SM00388 His Kinase A (phosphoacceptor) domain XJ27_13775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XJ27_13810 SM01060 XJ27_13810 XJ27_13825 SM00421 helix_turn_helix, Lux Regulon XJ27_13825 SM00448 cheY-homologous receiver domain XJ27_13840 SM00382 ATPases associated with a variety of cellular activities XJ27_13885 SM00849 Metallo-beta-lactamase superfamily XJ27_13915 SM00960 Roadblock/LC7 domain XJ27_13980 SM00387 Histidine kinase-like ATPases XJ27_13980 SM00388 His Kinase A (phosphoacceptor) domain XJ27_13985 SM00448 cheY-homologous receiver domain XJ27_13985 SM00862 Transcriptional regulatory protein, C terminal XJ27_14005 SM00248 ankyrin repeats XJ27_14010 SM01060 XJ27_14010 XJ27_14015 SM00491 XJ27_14015 XJ27_14055 SM01004 Delta-aminolevulinic acid dehydratase XJ27_14100 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XJ27_14120 SM00382 ATPases associated with a variety of cellular activities XJ27_14130 SM00530 Helix-turn-helix XRE-family like proteins XJ27_14160 SM00382 ATPases associated with a variety of cellular activities XJ27_14225 SM00881 CoA binding domain XJ27_14245 SM00116 Domain in cystathionine beta-synthase and other proteins. XJ27_14245 SM00924 MgtE intracellular N domain XJ27_14270 SM00248 ankyrin repeats XJ27_14280 SM00825 Beta-ketoacyl synthase XJ27_14300 SM00822 XJ27_14300 XJ27_14335 SM00563 Phosphate acyltransferases XJ27_14385 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XJ27_14385 SM00474 3'-5' exonuclease XJ27_14385 SM00475 5'-3' exonuclease XJ27_14385 SM00482 DNA polymerase A domain XJ27_14395 SM00220 Serine/Threonine protein kinases, catalytic domain XJ27_14420 SM00342 helix_turn_helix, arabinose operon control protein XJ27_14430 SM01266 XJ27_14430 XJ27_14455 SM00155 Phospholipase D. Active site motifs. XJ27_14600 SM00421 helix_turn_helix, Lux Regulon XJ27_14600 SM00448 cheY-homologous receiver domain XJ27_14655 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XJ27_14670 SM00346 helix_turn_helix isocitrate lyase regulation XJ27_14675 SM00342 helix_turn_helix, arabinose operon control protein XJ27_14690 SM00387 Histidine kinase-like ATPases XJ27_14690 SM00388 His Kinase A (phosphoacceptor) domain XJ27_14690 SM00448 cheY-homologous receiver domain XJ27_14710 SM00564 beta-propeller repeat XJ27_14755 SM00836 DALR anticodon binding domain XJ27_14765 SM00382 ATPases associated with a variety of cellular activities XJ27_14770 SM00567 E-Z type HEAT repeats XJ27_14840 SM00354 helix_turn _helix lactose operon repressor XJ27_14855 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XJ27_14865 SM00758 XJ27_14865 XJ27_14865 SM01217 XJ27_14865 XJ27_14890 SM00612 XJ27_14890 XJ27_14900 SM00633 Glycosyl hydrolase family 10 XJ27_14915 SM00633 Glycosyl hydrolase family 10 XJ27_14965 SM00829 Enoylreductase XJ27_14970 SM00563 Phosphate acyltransferases XJ27_14980 SM00354 helix_turn _helix lactose operon repressor XJ27_14995 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XJ27_15035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_15035 SM00388 His Kinase A (phosphoacceptor) domain XJ27_15050 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XJ27_15050 SM01232 XJ27_15050 XJ27_15085 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_15085 SM00091 PAS domain XJ27_15150 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_15195 SM00155 Phospholipase D. Active site motifs. XJ27_15240 SM00530 Helix-turn-helix XRE-family like proteins XJ27_15275 SM00369 Leucine-rich repeats, typical (most populated) subfamily XJ27_15290 SM00530 Helix-turn-helix XRE-family like proteins XJ27_15320 SM00342 helix_turn_helix, arabinose operon control protein XJ27_15330 SM00530 Helix-turn-helix XRE-family like proteins XJ27_15360 SM00382 ATPases associated with a variety of cellular activities XJ27_15390 SM00342 helix_turn_helix, arabinose operon control protein XJ27_15395 SM01126 XJ27_15395 XJ27_15445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_15445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_15445 SM00091 PAS domain XJ27_15445 SM00267 diguanylate cyclase XJ27_15495 SM00062 Bacterial periplasmic substrate-binding proteins XJ27_15500 SM00382 ATPases associated with a variety of cellular activities XJ27_15545 SM00342 helix_turn_helix, arabinose operon control protein XJ27_15590 SM00014 Acid phosphatase homologues XJ27_15615 SM00382 ATPases associated with a variety of cellular activities XJ27_15615 SM00760 Bacterial dnaA protein helix-turn-helix domain XJ27_15620 SM00480 DNA polymerase III beta subunit XJ27_15630 SM00387 Histidine kinase-like ATPases XJ27_15630 SM00433 TopoisomeraseII XJ27_15645 SM00028 Tetratricopeptide repeats XJ27_15680 SM00155 Phospholipase D. Active site motifs. XJ27_15685 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_15715 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XJ27_15715 SM00245 tail specific protease XJ27_15760 SM00829 Enoylreductase XJ27_15845 SM00822 XJ27_15845 XJ27_15930 SM00487 DEAD-like helicases superfamily XJ27_15930 SM00490 helicase superfamily c-terminal domain XJ27_15990 SM00822 XJ27_15990 XJ27_16080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_16080 SM00091 PAS domain XJ27_16080 SM00421 helix_turn_helix, Lux Regulon XJ27_16235 SM00829 Enoylreductase XJ27_16250 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen XJ27_16290 SM00421 helix_turn_helix, Lux Regulon XJ27_16290 SM00448 cheY-homologous receiver domain XJ27_16300 SM00862 Transcriptional regulatory protein, C terminal XJ27_16435 SM00642 Alpha-amylase domain XJ27_16440 SM00642 Alpha-amylase domain XJ27_16445 SM00642 Alpha-amylase domain XJ27_16515 SM00354 helix_turn _helix lactose operon repressor XJ27_16550 SM00530 Helix-turn-helix XRE-family like proteins XJ27_16565 SM00344 helix_turn_helix ASNC type XJ27_16580 SM00382 ATPases associated with a variety of cellular activities XJ27_16595 SM00382 ATPases associated with a variety of cellular activities XJ27_16625 SM00530 Helix-turn-helix XRE-family like proteins XJ27_16650 SM00855 Phosphoglycerate mutase family XJ27_16655 SM00867 YceI-like domain XJ27_16660 SM00155 Phospholipase D. Active site motifs. XJ27_16670 SM00563 Phosphate acyltransferases XJ27_16685 SM00028 Tetratricopeptide repeats XJ27_16705 SM01230 XJ27_16705 XJ27_16710 SM00938 Nitrogen regulatory protein P-II XJ27_16720 SM00387 Histidine kinase-like ATPases XJ27_16720 SM00388 His Kinase A (phosphoacceptor) domain XJ27_16725 SM00382 ATPases associated with a variety of cellular activities XJ27_16725 SM00448 cheY-homologous receiver domain XJ27_16785 SM00450 Rhodanese Homology Domain XJ27_16810 SM00387 Histidine kinase-like ATPases XJ27_16810 SM00388 His Kinase A (phosphoacceptor) domain XJ27_16815 SM00382 ATPases associated with a variety of cellular activities XJ27_16815 SM00448 cheY-homologous receiver domain XJ27_16875 SM00028 Tetratricopeptide repeats XJ27_16875 SM00862 Transcriptional regulatory protein, C terminal XJ27_16925 SM00563 Phosphate acyltransferases XJ27_16970 SM00100 Cyclic nucleotide-monophosphate binding domain XJ27_16970 SM00267 diguanylate cyclase XJ27_16995 SM00878 Biotin carboxylase C-terminal domain XJ27_17020 SM00953 XJ27_17020 XJ27_17060 SM00833 Cobalamin synthesis protein cobW C-terminal domain XJ27_17100 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_17135 SM00829 Enoylreductase XJ27_17165 SM00487 DEAD-like helicases superfamily XJ27_17165 SM00490 helicase superfamily c-terminal domain XJ27_17165 SM00847 Helicase associated domain (HA2) Add an annotation XJ27_17170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_17170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_17180 SM00095 Transthyretin XJ27_17260 SM01126 XJ27_17260 XJ27_17480 SM01126 XJ27_17480 XJ27_17560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XJ27_17565 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_17585 SM00342 helix_turn_helix, arabinose operon control protein XJ27_17615 SM00420 helix_turn_helix, Deoxyribose operon repressor XJ27_17615 SM01134 XJ27_17615 XJ27_17625 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_17625 SM00895 XJ27_17625 XJ27_17635 SM00882 Coenzyme A transferase XJ27_17640 SM00882 Coenzyme A transferase XJ27_17660 SM00998 Adenylosuccinate lyase C-terminus XJ27_17680 SM00346 helix_turn_helix isocitrate lyase regulation XJ27_17685 SM00090 RIO-like kinase XJ27_17700 SM01228 XJ27_17700 XJ27_17755 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_17755 SM00876 Biotin and Thiamin Synthesis associated domain XJ27_17870 SM00347 helix_turn_helix multiple antibiotic resistance protein XJ27_17900 SM00861 Transketolase, pyrimidine binding domain XJ27_17920 SM00487 DEAD-like helicases superfamily XJ27_17920 SM00490 helicase superfamily c-terminal domain XJ27_17980 SM00642 Alpha-amylase domain XJ27_17990 SM00642 Alpha-amylase domain XJ27_18000 SM00642 Alpha-amylase domain XJ27_18005 SM00642 Alpha-amylase domain XJ27_18015 SM00267 diguanylate cyclase XJ27_18100 SM00271 DnaJ molecular chaperone homology domain XJ27_18120 SM00046 Diacylglycerol kinase catalytic domain (presumed) XJ27_18250 SM00382 ATPases associated with a variety of cellular activities XJ27_18300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_18300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_18310 SM00903 Flavin reductase like domain XJ27_18330 SM00100 Cyclic nucleotide-monophosphate binding domain XJ27_18330 SM00419 helix_turn_helix, cAMP Regulatory protein XJ27_18385 SM00073 Histidine Phosphotransfer domain XJ27_18385 SM00387 Histidine kinase-like ATPases XJ27_18385 SM00388 His Kinase A (phosphoacceptor) domain XJ27_18385 SM00448 cheY-homologous receiver domain XJ27_18390 SM00052 Putative diguanylate phosphodiesterase XJ27_18390 SM00267 diguanylate cyclase XJ27_18390 SM00448 cheY-homologous receiver domain XJ27_18440 SM00563 Phosphate acyltransferases XJ27_18455 SM01209 XJ27_18455 XJ27_18455 SM01210 XJ27_18455 XJ27_18460 SM00798 AICARFT/IMPCHase bienzyme XJ27_18460 SM00851 MGS-like domain XJ27_18480 SM01126 XJ27_18480 XJ27_18500 SM00530 Helix-turn-helix XRE-family like proteins XJ27_18530 SM01126 XJ27_18530 XJ27_18570 SM00878 Biotin carboxylase C-terminal domain XJ27_18610 SM00883 Chaperonin 10 Kd subunit XJ27_18715 SM00965 Secretin and TonB N terminus short domain XJ27_18765 SM00867 YceI-like domain XJ27_18810 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XJ27_18820 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_18820 SM00895 XJ27_18820 XJ27_18840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_18840 SM00331 Sigma factor PP2C-like phosphatases XJ27_18875 SM00901 XJ27_18875 XJ27_18885 SM01321 XJ27_18885 XJ27_18905 SM00974 XJ27_18905 XJ27_18970 SM00530 Helix-turn-helix XRE-family like proteins XJ27_19055 SM00267 diguanylate cyclase XJ27_19085 SM00062 Bacterial periplasmic substrate-binding proteins XJ27_19135 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XJ27_19135 SM01232 XJ27_19135 XJ27_19145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_19160 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_19160 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XJ27_19160 SM00091 PAS domain XJ27_19160 SM00267 diguanylate cyclase XJ27_19170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_19170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_19170 SM01049 XJ27_19170 XJ27_19175 SM00637 XJ27_19175 XJ27_19185 SM00267 diguanylate cyclase XJ27_19215 SM00448 cheY-homologous receiver domain XJ27_19215 SM00850 LytTr DNA-binding domain XJ27_19305 SM00382 ATPases associated with a variety of cellular activities XJ27_19305 SM01086 C-terminal, D2-small domain, of ClpB protein XJ27_19340 SM00267 diguanylate cyclase XJ27_19345 SM01263 XJ27_19345 XJ27_19360 SM00564 beta-propeller repeat XJ27_19365 SM00062 Bacterial periplasmic substrate-binding proteins XJ27_19365 SM00248 ankyrin repeats XJ27_19380 SM00829 Enoylreductase XJ27_19390 SM00382 ATPases associated with a variety of cellular activities XJ27_19400 SM00268 Actin XJ27_19425 SM00710 Parallel beta-helix repeats XJ27_19440 SM00936 Penicillin-binding protein 5, C-terminal domain XJ27_19460 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_19465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XJ27_19465 SM00245 tail specific protease XJ27_19515 SM01350 XJ27_19515 XJ27_19525 SM00749 bacterial OsmY and nodulation domain XJ27_19530 SM00387 Histidine kinase-like ATPases XJ27_19530 SM00388 His Kinase A (phosphoacceptor) domain XJ27_19535 SM00448 cheY-homologous receiver domain XJ27_19540 SM00387 Histidine kinase-like ATPases XJ27_19540 SM00388 His Kinase A (phosphoacceptor) domain XJ27_19540 SM00448 cheY-homologous receiver domain XJ27_19565 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XJ27_19590 SM00382 ATPases associated with a variety of cellular activities XJ27_19660 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_19660 SM00866 XJ27_19660 XJ27_19670 SM00354 helix_turn _helix lactose operon repressor XJ27_19750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_19750 SM00387 Histidine kinase-like ATPases XJ27_19750 SM00388 His Kinase A (phosphoacceptor) domain XJ27_19755 SM00448 cheY-homologous receiver domain XJ27_19755 SM00862 Transcriptional regulatory protein, C terminal XJ27_19780 SM00829 Enoylreductase XJ27_19795 SM00345 helix_turn_helix gluconate operon transcriptional repressor XJ27_19870 SM00450 Rhodanese Homology Domain XJ27_19905 SM00382 ATPases associated with a variety of cellular activities XJ27_19930 SM01154 XJ27_19930 XJ27_19950 SM00642 Alpha-amylase domain XJ27_19965 SM00354 helix_turn _helix lactose operon repressor XJ27_19970 SM00822 XJ27_19970 XJ27_19985 SM00448 cheY-homologous receiver domain XJ27_19985 SM00862 Transcriptional regulatory protein, C terminal XJ27_19990 SM00387 Histidine kinase-like ATPases XJ27_19990 SM00388 His Kinase A (phosphoacceptor) domain XJ27_20000 SM00421 helix_turn_helix, Lux Regulon XJ27_20000 SM00448 cheY-homologous receiver domain XJ27_20015 SM00387 Histidine kinase-like ATPases XJ27_20015 SM00388 His Kinase A (phosphoacceptor) domain XJ27_20015 SM00448 cheY-homologous receiver domain XJ27_20030 SM00919 Malic enzyme, NAD binding domain XJ27_20030 SM01274 XJ27_20030 XJ27_20080 SM00267 diguanylate cyclase XJ27_20105 SM01329 XJ27_20105 XJ27_20110 SM00917 LeuA allosteric (dimerisation) domain XJ27_20140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_20160 SM00862 Transcriptional regulatory protein, C terminal XJ27_20165 SM00342 helix_turn_helix, arabinose operon control protein XJ27_20220 SM00464 Found in ATP-dependent protease La (LON) XJ27_20300 SM00028 Tetratricopeptide repeats XJ27_20300 SM00382 ATPases associated with a variety of cellular activities XJ27_20300 SM00421 helix_turn_helix, Lux Regulon XJ27_20370 SM01011 Aminopeptidase P, N-terminal domain XJ27_20390 SM00729 Elongator protein 3, MiaB family, Radical SAM XJ27_20415 SM00072 Guanylate kinase homologues. XJ27_20420 SM01409 XJ27_20420 XJ27_20425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XJ27_20425 SM00954 Region found in RelA / SpoT proteins XJ27_20435 SM00487 DEAD-like helicases superfamily XJ27_20435 SM00490 helicase superfamily c-terminal domain XJ27_20485 SM00965 Secretin and TonB N terminus short domain XJ27_20490 SM00382 ATPases associated with a variety of cellular activities XJ27_20505 SM00327 von Willebrand factor (vWF) type A domain XJ27_20510 SM00028 Tetratricopeptide repeats XJ27_20510 SM00327 von Willebrand factor (vWF) type A domain XJ27_20525 SM00861 Transketolase, pyrimidine binding domain XJ27_20545 SM00822 XJ27_20545 XJ27_20595 SM00382 ATPases associated with a variety of cellular activities XJ27_20610 SM00849 Metallo-beta-lactamase superfamily XJ27_20635 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XJ27_20675 SM00506 Appr-1"-p processing enzyme XJ27_20705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XJ27_20705 SM00387 Histidine kinase-like ATPases XJ27_20770 SM00967 RNA 2'-O ribose methyltransferase substrate binding XJ27_20800 SM00354 helix_turn _helix lactose operon repressor XJ27_20850 SM00869 Autotransporter beta-domain XJ27_20905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_20905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XJ27_20930 SM00528 Domain in histone-like proteins of HNS family XJ27_20935 SM00642 Alpha-amylase domain XJ27_20945 SM00448 cheY-homologous receiver domain XJ27_20945 SM00862 Transcriptional regulatory protein, C terminal XJ27_20950 SM00387 Histidine kinase-like ATPases XJ27_20950 SM00388 His Kinase A (phosphoacceptor) domain XJ27_20990 SM01126 XJ27_20990 XJ27_21000 SM00382 ATPases associated with a variety of cellular activities XJ27_21000 SM00448 cheY-homologous receiver domain XJ27_21005 SM00387 Histidine kinase-like ATPases XJ27_21005 SM00388 His Kinase A (phosphoacceptor) domain XJ27_21015 SM00881 CoA binding domain XJ27_21030 SM00849 Metallo-beta-lactamase superfamily XJ27_21080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_21085 SM00564 beta-propeller repeat XJ27_21160 SM00062 Bacterial periplasmic substrate-binding proteins XJ27_21170 SM00382 ATPases associated with a variety of cellular activities XJ27_21175 SM00382 ATPases associated with a variety of cellular activities XJ27_21175 SM01086 C-terminal, D2-small domain, of ClpB protein XJ27_21200 SM00342 helix_turn_helix, arabinose operon control protein XJ27_21200 SM00871 Bacterial transcription activator, effector binding domain XJ27_21265 SM00382 ATPases associated with a variety of cellular activities XJ27_21300 SM00834 Putative regulatory protein XJ27_21340 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XJ27_21355 SM00382 ATPases associated with a variety of cellular activities XJ27_21390 SM00028 Tetratricopeptide repeats XJ27_21415 SM00487 DEAD-like helicases superfamily XJ27_21445 SM00091 PAS domain XJ27_21445 SM00911 HWE histidine kinase XJ27_21450 SM00448 cheY-homologous receiver domain XJ27_21480 SM00363 S4 RNA-binding domain XJ27_21490 SM00448 cheY-homologous receiver domain XJ27_21500 SM00341 Helicase and RNase D C-terminal XJ27_21500 SM00487 DEAD-like helicases superfamily XJ27_21500 SM00490 helicase superfamily c-terminal domain XJ27_21500 SM00956 XJ27_21500 XJ27_21510 SM00382 ATPases associated with a variety of cellular activities XJ27_21510 SM00487 DEAD-like helicases superfamily XJ27_21510 SM00490 helicase superfamily c-terminal domain XJ27_21510 SM00847 Helicase associated domain (HA2) Add an annotation XJ27_21550 SM00954 Region found in RelA / SpoT proteins XJ27_21575 SM00491 XJ27_21575 XJ27_21595 SM00448 cheY-homologous receiver domain XJ27_21600 SM00448 cheY-homologous receiver domain XJ27_21605 SM00260 Two component signalling adaptor domain XJ27_21610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XJ27_21615 SM00073 Histidine Phosphotransfer domain XJ27_21615 SM00260 Two component signalling adaptor domain XJ27_21615 SM00387 Histidine kinase-like ATPases XJ27_21615 SM00448 cheY-homologous receiver domain XJ27_21615 SM01231 XJ27_21615 XJ27_21650 SM00327 von Willebrand factor (vWF) type A domain XJ27_21665 SM00369 Leucine-rich repeats, typical (most populated) subfamily XJ27_21690 SM00220 Serine/Threonine protein kinases, catalytic domain XJ27_21760 SM01149 XJ27_21760 XJ27_21800 SM00758 XJ27_21800 XJ27_21800 SM01217 XJ27_21800 XJ27_21820 SM00636 XJ27_21820 XJ27_21825 SM00812 Alpha-L-fucosidase XJ27_21945 SM00116 Domain in cystathionine beta-synthase and other proteins. XJ27_22000 SM00357 Cold shock protein domain XJ27_22005 SM00867 YceI-like domain XJ27_22015 SM00867 YceI-like domain XJ27_22020 SM00387 Histidine kinase-like ATPases XJ27_22020 SM00388 His Kinase A (phosphoacceptor) domain XJ27_22020 SM00448 cheY-homologous receiver domain XJ27_22185 SM00470 ParB-like nuclease domain XJ27_22205 SM00965 Secretin and TonB N terminus short domain XJ27_22370 SM00857 Resolvase, N terminal domain XJ27_22405 SM00966 SpoVT / AbrB like domain XJ27_22410 SM00857 Resolvase, N terminal domain