locus-tag class description DYQ48_00005 PF00712 DNA polymerase III beta subunit, N-terminal domain DYQ48_00005 PF02767 DNA polymerase III beta subunit, central domain DYQ48_00005 PF02768 DNA polymerase III beta subunit, C-terminal domain DYQ48_00010 PF02463 RecF/RecN/SMC N terminal domain DYQ48_00015 PF00204 DNA gyrase B DYQ48_00015 PF00986 DNA gyrase B subunit, carboxyl terminus DYQ48_00015 PF18053 DNA gyrase B subunit insert domain DYQ48_00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_00015 PF01751 Toprim domain DYQ48_00025 PF01435 Peptidase family M48 DYQ48_00035 PF03544 Gram-negative bacterial TonB protein C-terminal DYQ48_00040 PF01618 MotA/TolQ/ExbB proton channel family DYQ48_00045 PF02472 Biopolymer transport protein ExbD/TolR DYQ48_00050 PF02472 Biopolymer transport protein ExbD/TolR DYQ48_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DYQ48_00070 PF13091 PLD-like domain DYQ48_00070 PF13396 Phospholipase_D-nuclease N-terminal DYQ48_00075 PF04055 Radical SAM superfamily DYQ48_00085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DYQ48_00100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYQ48_00100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYQ48_00105 PF03572 Peptidase family S41 DYQ48_00105 PF13180 PDZ domain DYQ48_00110 PF01551 Peptidase family M23 DYQ48_00120 PF04389 Peptidase family M28 DYQ48_00130 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ48_00135 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ48_00140 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ48_00145 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ48_00150 PF00107 Zinc-binding dehydrogenase DYQ48_00150 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_00160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYQ48_00160 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_00165 PF01493 GXGXG motif DYQ48_00165 PF01645 Conserved region in glutamate synthase DYQ48_00165 PF04898 Glutamate synthase central domain DYQ48_00165 PF00310 Glutamine amidotransferases class-II DYQ48_00200 PF02525 Flavodoxin-like fold DYQ48_00205 PF03466 LysR substrate binding domain DYQ48_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_00215 PF10091 Putative glucoamylase DYQ48_00215 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DYQ48_00215 PF06165 Glycosyltransferase family 36 DYQ48_00220 PF01804 Penicillin amidase DYQ48_00245 PF01638 HxlR-like helix-turn-helix DYQ48_00325 PF00271 Helicase conserved C-terminal domain DYQ48_00325 PF00270 DEAD/DEAH box helicase DYQ48_00325 PF09369 Domain of unknown function (DUF1998) DYQ48_00335 PF03006 Haemolysin-III related DYQ48_00380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_00380 PF03466 LysR substrate binding domain DYQ48_00400 PF02525 Flavodoxin-like fold DYQ48_00405 PF09722 Protein of unknown function (DUF2384) DYQ48_00405 PF01936 NYN domain DYQ48_00415 PF01638 HxlR-like helix-turn-helix DYQ48_00460 PF05532 CsbD-like DYQ48_00465 PF00072 Response regulator receiver domain DYQ48_00465 PF00196 Bacterial regulatory proteins, luxR family DYQ48_00490 PF02868 Thermolysin metallopeptidase, alpha-helical domain DYQ48_00490 PF01447 Thermolysin metallopeptidase, catalytic domain DYQ48_00490 PF16485 Protealysin propeptide DYQ48_00500 PF00293 NUDIX domain DYQ48_00500 PF09297 NADH pyrophosphatase zinc ribbon domain DYQ48_00505 PF07859 alpha/beta hydrolase fold DYQ48_00515 PF00085 Thioredoxin DYQ48_00520 PF08946 Osmosensory transporter coiled coil DYQ48_00520 PF00083 Sugar (and other) transporter DYQ48_00560 PF07726 ATPase family associated with various cellular activities (AAA) DYQ48_00560 PF17863 AAA lid domain DYQ48_00605 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DYQ48_00610 PF00155 Aminotransferase class I and II DYQ48_00615 PF07715 TonB-dependent Receptor Plug Domain DYQ48_00615 PF00593 TonB dependent receptor DYQ48_00625 PF07883 Cupin domain DYQ48_00635 PF00171 Aldehyde dehydrogenase family DYQ48_00640 PF00107 Zinc-binding dehydrogenase DYQ48_00640 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_00655 PF02735 Ku70/Ku80 beta-barrel domain DYQ48_00660 PF04679 ATP dependent DNA ligase C terminal region DYQ48_00660 PF13298 DNA polymerase Ligase (LigD) DYQ48_00660 PF01068 ATP dependent DNA ligase domain DYQ48_00675 PF01070 FMN-dependent dehydrogenase DYQ48_00690 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DYQ48_00695 PF07730 Histidine kinase DYQ48_00700 PF00196 Bacterial regulatory proteins, luxR family DYQ48_00700 PF00072 Response regulator receiver domain DYQ48_00715 PF00486 Transcriptional regulatory protein, C terminal DYQ48_00715 PF18500 CadC C-terminal domain 1 DYQ48_00720 PF07055 Enoyl reductase FAD binding domain DYQ48_00720 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DYQ48_00720 PF12241 Trans-2-enoyl-CoA reductase catalytic region DYQ48_00730 PF00294 pfkB family carbohydrate kinase DYQ48_00735 PF00593 TonB dependent receptor DYQ48_00735 PF07715 TonB-dependent Receptor Plug Domain DYQ48_00745 PF01095 Pectinesterase DYQ48_00780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DYQ48_00850 PF01609 Transposase DDE domain DYQ48_00850 PF05598 Transposase domain (DUF772) DYQ48_00885 PF00795 Carbon-nitrogen hydrolase DYQ48_00910 PF11896 Domain of unknown function (DUF3416) DYQ48_00910 PF00128 Alpha amylase, catalytic domain DYQ48_00915 PF00128 Alpha amylase, catalytic domain DYQ48_00915 PF16657 Maltogenic Amylase, C-terminal domain DYQ48_00920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ48_00920 PF02806 Alpha amylase, C-terminal all-beta domain DYQ48_00920 PF00128 Alpha amylase, catalytic domain DYQ48_00945 PF00248 Aldo/keto reductase family DYQ48_00950 PF13472 GDSL-like Lipase/Acylhydrolase family DYQ48_00955 PF00135 Carboxylesterase family DYQ48_00960 PF13472 GDSL-like Lipase/Acylhydrolase family DYQ48_00960 PF07859 alpha/beta hydrolase fold DYQ48_00970 PF03480 Bacterial extracellular solute-binding protein, family 7 DYQ48_00980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DYQ48_00985 PF04616 Glycosyl hydrolases family 43 DYQ48_00985 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DYQ48_00990 PF00356 Bacterial regulatory proteins, lacI family DYQ48_01000 PF04962 KduI/IolB family DYQ48_01015 PF00657 GDSL-like Lipase/Acylhydrolase DYQ48_01035 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DYQ48_01040 PF01037 Lrp/AsnC ligand binding domain DYQ48_01045 PF00593 TonB dependent receptor DYQ48_01045 PF07660 Secretin and TonB N terminus short domain DYQ48_01045 PF07715 TonB-dependent Receptor Plug Domain DYQ48_01050 PF01734 Patatin-like phospholipase DYQ48_01060 PF00005 ABC transporter DYQ48_01075 PF00571 CBS domain DYQ48_01075 PF00005 ABC transporter DYQ48_01080 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_01090 PF12867 DinB superfamily DYQ48_01090 PF03781 Sulfatase-modifying factor enzyme 1 DYQ48_01100 PF07804 HipA-like C-terminal domain DYQ48_01100 PF13657 HipA N-terminal domain DYQ48_01105 PF01381 Helix-turn-helix DYQ48_01140 PF01883 Iron-sulfur cluster assembly protein DYQ48_01140 PF10609 NUBPL iron-transfer P-loop NTPase DYQ48_01155 PF13091 PLD-like domain DYQ48_01160 PF03061 Thioesterase superfamily DYQ48_01185 PF01161 Phosphatidylethanolamine-binding protein DYQ48_01195 PF02673 Bacitracin resistance protein BacA DYQ48_01200 PF00120 Glutamine synthetase, catalytic domain DYQ48_01200 PF03951 Glutamine synthetase, beta-Grasp domain DYQ48_01205 PF00543 Nitrogen regulatory protein P-II DYQ48_01210 PF00909 Ammonium Transporter Family DYQ48_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_01215 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_01215 PF00989 PAS fold DYQ48_01220 PF00158 Sigma-54 interaction domain DYQ48_01220 PF00072 Response regulator receiver domain DYQ48_01220 PF02954 Bacterial regulatory protein, Fis family DYQ48_01225 PF00080 Copper/zinc superoxide dismutase (SODC) DYQ48_01230 PF00080 Copper/zinc superoxide dismutase (SODC) DYQ48_01240 PF02803 Thiolase, C-terminal domain DYQ48_01240 PF00108 Thiolase, N-terminal domain DYQ48_01285 PF00581 Rhodanese-like domain DYQ48_01290 PF02556 Preprotein translocase subunit SecB DYQ48_01295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DYQ48_01295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DYQ48_01305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYQ48_01305 PF00205 Thiamine pyrophosphate enzyme, central domain DYQ48_01305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYQ48_01310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_01310 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_01315 PF00158 Sigma-54 interaction domain DYQ48_01315 PF02954 Bacterial regulatory protein, Fis family DYQ48_01315 PF00072 Response regulator receiver domain DYQ48_01330 PF07690 Major Facilitator Superfamily DYQ48_01335 PF00588 SpoU rRNA Methylase family DYQ48_01350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYQ48_01350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ48_01355 PF02661 Fic/DOC family DYQ48_01355 PF13784 Fic/DOC family N-terminal DYQ48_01360 PF00561 alpha/beta hydrolase fold DYQ48_01365 PF03692 Putative zinc- or iron-chelating domain DYQ48_01370 PF00501 AMP-binding enzyme DYQ48_01385 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DYQ48_01400 PF01820 D-ala D-ala ligase N-terminus DYQ48_01400 PF07478 D-ala D-ala ligase C-terminus DYQ48_01410 PF03109 ABC1 family DYQ48_01415 PF00849 RNA pseudouridylate synthase DYQ48_01425 PF00472 RF-1 domain DYQ48_01435 PF01112 Asparaginase DYQ48_01440 PF01432 Peptidase family M3 DYQ48_01450 PF12706 Beta-lactamase superfamily domain DYQ48_01460 PF03466 LysR substrate binding domain DYQ48_01460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_01465 PF01274 Malate synthase DYQ48_01470 PF00463 Isocitrate lyase family DYQ48_01475 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_01475 PF13426 PAS domain DYQ48_01475 PF00563 EAL domain DYQ48_01495 PF00326 Prolyl oligopeptidase family DYQ48_01500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYQ48_01500 PF00364 Biotin-requiring enzyme DYQ48_01500 PF00289 Biotin carboxylase, N-terminal domain DYQ48_01500 PF02785 Biotin carboxylase C-terminal domain DYQ48_01505 PF01039 Carboxyl transferase domain DYQ48_01510 PF02770 Acyl-CoA dehydrogenase, middle domain DYQ48_01510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_01510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_01550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DYQ48_01565 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYQ48_01565 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYQ48_01590 PF03969 AFG1-like ATPase DYQ48_01605 PF01047 MarR family DYQ48_01610 PF02566 OsmC-like protein DYQ48_01615 PF12697 Alpha/beta hydrolase family DYQ48_01635 PF00248 Aldo/keto reductase family DYQ48_01640 PF16884 N-terminal domain of oxidoreductase DYQ48_01640 PF00107 Zinc-binding dehydrogenase DYQ48_01655 PF00849 RNA pseudouridylate synthase DYQ48_01660 PF00593 TonB dependent receptor DYQ48_01670 PF08482 ATP-dependent helicase C-terminal DYQ48_01670 PF00271 Helicase conserved C-terminal domain DYQ48_01670 PF04408 Helicase associated domain (HA2) DYQ48_01670 PF00270 DEAD/DEAH box helicase DYQ48_01675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_01675 PF00672 HAMP domain DYQ48_01675 PF02203 Tar ligand binding domain homologue DYQ48_01685 PF07308 Protein of unknown function (DUF1456) DYQ48_01690 PF00576 HIUase/Transthyretin family DYQ48_01695 PF13454 FAD-NAD(P)-binding DYQ48_01700 PF01014 Uricase DYQ48_01700 PF09349 OHCU decarboxylase DYQ48_01715 PF00266 Aminotransferase class-V DYQ48_01720 PF07687 Peptidase dimerisation domain DYQ48_01720 PF01546 Peptidase family M20/M25/M40 DYQ48_01725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_01725 PF03466 LysR substrate binding domain DYQ48_01730 PF07690 Major Facilitator Superfamily DYQ48_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_01735 PF03466 LysR substrate binding domain DYQ48_01740 PF00561 alpha/beta hydrolase fold DYQ48_01770 PF00145 C-5 cytosine-specific DNA methylase DYQ48_01800 PF01425 Amidase DYQ48_01805 PF01156 Inosine-uridine preferring nucleoside hydrolase DYQ48_01815 PF00860 Permease family DYQ48_01820 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ48_01825 PF00355 Rieske [2Fe-2S] domain DYQ48_01830 PF03466 LysR substrate binding domain DYQ48_01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_01835 PF01026 TatD related DNase DYQ48_01850 PF03466 LysR substrate binding domain DYQ48_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_01855 PF07690 Major Facilitator Superfamily DYQ48_01880 PF02146 Sir2 family DYQ48_01885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ48_01890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYQ48_01890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYQ48_01900 PF00551 Formyl transferase DYQ48_01905 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_01920 PF02219 Methylenetetrahydrofolate reductase DYQ48_01925 PF02677 Epoxyqueuosine reductase QueH DYQ48_01930 PF03466 LysR substrate binding domain DYQ48_01930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_01935 PF03358 NADPH-dependent FMN reductase DYQ48_01945 PF01717 Cobalamin-independent synthase, Catalytic domain DYQ48_01945 PF08267 Cobalamin-independent synthase, N-terminal domain DYQ48_01960 PF05368 NmrA-like family DYQ48_01965 PF01638 HxlR-like helix-turn-helix DYQ48_02065 PF13495 Phage integrase, N-terminal SAM-like domain DYQ48_02065 PF00589 Phage integrase family DYQ48_02070 PF00920 Dehydratase family DYQ48_02075 PF03692 Putative zinc- or iron-chelating domain DYQ48_02080 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ48_02085 PF07690 Major Facilitator Superfamily DYQ48_02090 PF11871 Domain of unknown function (DUF3391) DYQ48_02090 PF01966 HD domain DYQ48_02110 PF00171 Aldehyde dehydrogenase family DYQ48_02125 PF01494 FAD binding domain DYQ48_02140 PF00230 Major intrinsic protein DYQ48_02145 PF01266 FAD dependent oxidoreductase DYQ48_02145 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DYQ48_02150 PF00455 DeoR C terminal sensor domain DYQ48_02150 PF08220 DeoR-like helix-turn-helix domain DYQ48_02165 PF00355 Rieske [2Fe-2S] domain DYQ48_02170 PF01144 Coenzyme A transferase DYQ48_02175 PF01144 Coenzyme A transferase DYQ48_02180 PF00108 Thiolase, N-terminal domain DYQ48_02180 PF02803 Thiolase, C-terminal domain DYQ48_02185 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DYQ48_02185 PF00775 Dioxygenase DYQ48_02195 PF00206 Lyase DYQ48_02195 PF10397 Adenylosuccinate lyase C-terminus DYQ48_02200 PF12146 Serine aminopeptidase, S33 DYQ48_02205 PF02627 Carboxymuconolactone decarboxylase family DYQ48_02220 PF01614 Bacterial transcriptional regulator DYQ48_02220 PF09339 IclR helix-turn-helix domain DYQ48_02230 PF07859 alpha/beta hydrolase fold DYQ48_02235 PF10677 Protein of unknown function (DUF2490) DYQ48_02240 PF13932 GidA associated domain DYQ48_02240 PF01134 Glucose inhibited division protein A DYQ48_02250 PF00291 Pyridoxal-phosphate dependent enzyme DYQ48_02250 PF13291 ACT domain DYQ48_02275 PF13649 Methyltransferase domain DYQ48_02285 PF12697 Alpha/beta hydrolase family DYQ48_02290 PF00155 Aminotransferase class I and II DYQ48_02295 PF06968 Biotin and Thiamin Synthesis associated domain DYQ48_02295 PF04055 Radical SAM superfamily DYQ48_02310 PF01040 UbiA prenyltransferase family DYQ48_02340 PF05649 Peptidase family M13 DYQ48_02340 PF01431 Peptidase family M13 DYQ48_02360 PF12794 Mechanosensitive ion channel inner membrane domain 1 DYQ48_02360 PF12795 Mechanosensitive ion channel porin domain DYQ48_02360 PF00924 Mechanosensitive ion channel DYQ48_02370 PF00884 Sulfatase DYQ48_02380 PF03109 ABC1 family DYQ48_02385 PF05661 Protein of unknown function (DUF808) DYQ48_02395 PF08448 PAS fold DYQ48_02395 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_02400 PF08323 Starch synthase catalytic domain DYQ48_02400 PF00534 Glycosyl transferases group 1 DYQ48_02405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ48_02405 PF00128 Alpha amylase, catalytic domain DYQ48_02405 PF02806 Alpha amylase, C-terminal all-beta domain DYQ48_02410 PF11941 Domain of unknown function (DUF3459) DYQ48_02410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ48_02410 PF00128 Alpha amylase, catalytic domain DYQ48_02415 PF02446 4-alpha-glucanotransferase DYQ48_02420 PF00128 Alpha amylase, catalytic domain DYQ48_02430 PF00128 Alpha amylase, catalytic domain DYQ48_02430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ48_02435 PF13460 NAD(P)H-binding DYQ48_02455 PF06903 VirK protein DYQ48_02460 PF06903 VirK protein DYQ48_02465 PF02321 Outer membrane efflux protein DYQ48_02470 PF00440 Bacterial regulatory proteins, tetR family DYQ48_02480 PF00873 AcrB/AcrD/AcrF family DYQ48_02490 PF00271 Helicase conserved C-terminal domain DYQ48_02490 PF00270 DEAD/DEAH box helicase DYQ48_02500 PF02817 e3 binding domain DYQ48_02500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYQ48_02500 PF00364 Biotin-requiring enzyme DYQ48_02510 PF02779 Transketolase, pyrimidine binding domain DYQ48_02510 PF02780 Transketolase, C-terminal domain DYQ48_02515 PF00676 Dehydrogenase E1 component DYQ48_02525 PF03301 Tryptophan 2,3-dioxygenase DYQ48_02530 PF00854 POT family DYQ48_02540 PF01047 MarR family DYQ48_02545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYQ48_02550 PF04480 Protein of unknown function (DUF559) DYQ48_02555 PF04209 homogentisate 1,2-dioxygenase DYQ48_02570 PF03334 Na+/H+ antiporter subunit DYQ48_02575 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DYQ48_02585 PF00361 Proton-conducting membrane transporter DYQ48_02590 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DYQ48_02595 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DYQ48_02595 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DYQ48_02595 PF13244 Domain of unknown function (DUF4040) DYQ48_02595 PF00361 Proton-conducting membrane transporter DYQ48_02610 PF02868 Thermolysin metallopeptidase, alpha-helical domain DYQ48_02610 PF07504 Fungalysin/Thermolysin Propeptide Motif DYQ48_02610 PF01483 Proprotein convertase P-domain DYQ48_02610 PF01447 Thermolysin metallopeptidase, catalytic domain DYQ48_02640 PF05819 NolX protein DYQ48_02655 PF00425 chorismate binding enzyme DYQ48_02655 PF04715 Anthranilate synthase component I, N terminal region DYQ48_02660 PF00781 Diacylglycerol kinase catalytic domain DYQ48_02670 PF00834 Ribulose-phosphate 3 epimerase family DYQ48_02680 PF05099 Tellurite resistance protein TerB DYQ48_02680 PF00226 DnaJ domain DYQ48_02685 PF01259 SAICAR synthetase DYQ48_02710 PF00561 alpha/beta hydrolase fold DYQ48_02765 PF01313 Bacterial export proteins, family 3 DYQ48_02770 PF00813 FliP family DYQ48_02785 PF00771 FHIPEP family DYQ48_02790 PF01312 FlhB HrpN YscU SpaS Family DYQ48_02805 PF01514 Secretory protein of YscJ/FliF family DYQ48_02820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ48_02820 PF18269 T3SS EscN ATPase C-terminal domain DYQ48_02820 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ48_02845 PF01464 Transglycosylase SLT domain DYQ48_02860 PF02203 Tar ligand binding domain homologue DYQ48_02860 PF00672 HAMP domain DYQ48_02860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_02865 PF00117 Glutamine amidotransferase class-I DYQ48_02875 PF00591 Glycosyl transferase family, a/b domain DYQ48_02875 PF02885 Glycosyl transferase family, helical bundle domain DYQ48_02880 PF00218 Indole-3-glycerol phosphate synthase DYQ48_02890 PF00027 Cyclic nucleotide-binding domain DYQ48_02890 PF00325 Bacterial regulatory proteins, crp family DYQ48_02895 PF02675 S-adenosylmethionine decarboxylase DYQ48_02900 PF00893 Small Multidrug Resistance protein DYQ48_02905 PF03232 Ubiquinone biosynthesis protein COQ7 DYQ48_02910 PF00572 Ribosomal protein L13 DYQ48_02915 PF00380 Ribosomal protein S9/S16 DYQ48_02930 PF00293 NUDIX domain DYQ48_02940 PF00210 Ferritin-like domain DYQ48_02945 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_02945 PF01627 Hpt domain DYQ48_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_02945 PF00072 Response regulator receiver domain DYQ48_02945 PF00672 HAMP domain DYQ48_02945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ48_02950 PF00072 Response regulator receiver domain DYQ48_02950 PF00486 Transcriptional regulatory protein, C terminal DYQ48_02970 PF01521 Iron-sulphur cluster biosynthesis DYQ48_02980 PF09297 NADH pyrophosphatase zinc ribbon domain DYQ48_02980 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DYQ48_02980 PF00293 NUDIX domain DYQ48_02985 PF17113 Regulatory signalling modulator protein AmpE DYQ48_02985 PF03186 CobD/Cbib protein DYQ48_03010 PF07690 Major Facilitator Superfamily DYQ48_03015 PF12805 FUSC-like inner membrane protein yccS DYQ48_03020 PF02844 Phosphoribosylglycinamide synthetase, N domain DYQ48_03020 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DYQ48_03020 PF02843 Phosphoribosylglycinamide synthetase, C domain DYQ48_03025 PF01808 AICARFT/IMPCHase bienzyme DYQ48_03025 PF02142 MGS-like domain DYQ48_03030 PF00818 Ice nucleation protein repeat DYQ48_03030 PF00818 Ice nucleation protein repeat DYQ48_03035 PF02954 Bacterial regulatory protein, Fis family DYQ48_03050 PF01381 Helix-turn-helix DYQ48_03075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYQ48_03075 PF00289 Biotin carboxylase, N-terminal domain DYQ48_03075 PF02785 Biotin carboxylase C-terminal domain DYQ48_03085 PF00364 Biotin-requiring enzyme DYQ48_03090 PF01220 Dehydroquinase class II DYQ48_03100 PF11412 Disulphide bond corrector protein DsbC DYQ48_03100 PF02683 Cytochrome C biogenesis protein transmembrane region DYQ48_03105 PF03091 CutA1 divalent ion tolerance protein DYQ48_03110 PF04231 Endonuclease I DYQ48_03115 PF00166 Chaperonin 10 Kd subunit DYQ48_03120 PF00118 TCP-1/cpn60 chaperonin family DYQ48_03125 PF01738 Dienelactone hydrolase family DYQ48_03140 PF07715 TonB-dependent Receptor Plug Domain DYQ48_03140 PF00593 TonB dependent receptor DYQ48_03150 PF07804 HipA-like C-terminal domain DYQ48_03155 PF00793 DAHP synthetase I family DYQ48_03160 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DYQ48_03160 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DYQ48_03180 PF16220 Domain of unknown function (DUF4880) DYQ48_03180 PF04773 FecR protein DYQ48_03185 PF07660 Secretin and TonB N terminus short domain DYQ48_03185 PF00593 TonB dependent receptor DYQ48_03185 PF07715 TonB-dependent Receptor Plug Domain DYQ48_03205 PF08335 GlnD PII-uridylyltransferase DYQ48_03205 PF03710 Glutamate-ammonia ligase adenylyltransferase DYQ48_03210 PF02592 Putative vitamin uptake transporter DYQ48_03230 PF00881 Nitroreductase family DYQ48_03235 PF04264 YceI-like domain DYQ48_03250 PF16957 Malonate decarboxylase, alpha subunit, transporter DYQ48_03255 PF06857 Malonate decarboxylase delta subunit (MdcD) DYQ48_03260 PF01039 Carboxyl transferase domain DYQ48_03270 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DYQ48_03275 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DYQ48_03280 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ48_03280 PF08659 KR domain DYQ48_03280 PF00550 Phosphopantetheine attachment site DYQ48_03280 PF16197 Ketoacyl-synthetase C-terminal extension DYQ48_03280 PF00698 Acyl transferase domain DYQ48_03280 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ48_03290 PF07729 FCD domain DYQ48_03290 PF00392 Bacterial regulatory proteins, gntR family DYQ48_03325 PF07745 Glycosyl hydrolase family 53 DYQ48_03330 PF17831 Pyruvate dehydrogenase E1 component middle domain DYQ48_03330 PF00456 Transketolase, thiamine diphosphate binding domain DYQ48_03340 PF00145 C-5 cytosine-specific DNA methylase DYQ48_03345 PF03852 DNA mismatch endonuclease Vsr DYQ48_03390 PF00580 UvrD/REP helicase N-terminal domain DYQ48_03390 PF13361 UvrD-like helicase C-terminal domain DYQ48_03515 PF07715 TonB-dependent Receptor Plug Domain DYQ48_03515 PF00593 TonB dependent receptor DYQ48_03560 PF13409 Glutathione S-transferase, N-terminal domain DYQ48_03595 PF00326 Prolyl oligopeptidase family DYQ48_03595 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DYQ48_03600 PF07759 Protein of unknown function (DUF1615) DYQ48_03605 PF05230 MASE2 domain DYQ48_03605 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_03630 PF00892 EamA-like transporter family DYQ48_03635 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYQ48_03650 PF00324 Amino acid permease DYQ48_03655 PF01544 CorA-like Mg2+ transporter protein DYQ48_03670 PF04616 Glycosyl hydrolases family 43 DYQ48_03675 PF01204 Trehalase DYQ48_03695 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DYQ48_03695 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DYQ48_03725 PF00563 EAL domain DYQ48_03725 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_03725 PF03707 Bacterial signalling protein N terminal repeat DYQ48_03735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_03735 PF00672 HAMP domain DYQ48_03735 PF02203 Tar ligand binding domain homologue DYQ48_03740 PF00553 Cellulose binding domain DYQ48_03740 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ48_03745 PF01740 STAS domain DYQ48_03745 PF00916 Sulfate permease family DYQ48_03750 PF08448 PAS fold DYQ48_03750 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_03770 PF13632 Glycosyl transferase family group 2 DYQ48_03780 PF06580 Histidine kinase DYQ48_03780 PF07694 5TMR of 5TMR-LYT DYQ48_03785 PF00072 Response regulator receiver domain DYQ48_03785 PF04397 LytTr DNA-binding domain DYQ48_03790 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DYQ48_03790 PF03900 Porphobilinogen deaminase, C-terminal domain DYQ48_03815 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ48_03815 PF00326 Prolyl oligopeptidase family DYQ48_03830 PF00155 Aminotransferase class I and II DYQ48_03840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DYQ48_03840 PF00326 Prolyl oligopeptidase family DYQ48_03845 PF04304 Protein of unknown function (DUF454) DYQ48_03855 PF01678 Diaminopimelate epimerase DYQ48_03865 PF00589 Phage integrase family DYQ48_03865 PF02899 Phage integrase, N-terminal SAM-like domain DYQ48_03870 PF00227 Proteasome subunit DYQ48_03875 PF00004 ATPase family associated with various cellular activities (AAA) DYQ48_03875 PF07724 AAA domain (Cdc48 subfamily) DYQ48_03875 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ48_03880 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DYQ48_03880 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DYQ48_03890 PF13673 Acetyltransferase (GNAT) domain DYQ48_03900 PF13533 Biotin-lipoyl like DYQ48_03910 PF01209 ubiE/COQ5 methyltransferase family DYQ48_03915 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_03915 PF03707 Bacterial signalling protein N terminal repeat DYQ48_03915 PF00563 EAL domain DYQ48_03920 PF01433 Peptidase family M1 domain DYQ48_03920 PF11838 ERAP1-like C-terminal domain DYQ48_03940 PF13360 PQQ-like domain DYQ48_03945 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYQ48_03960 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_03960 PF00107 Zinc-binding dehydrogenase DYQ48_03975 PF01590 GAF domain DYQ48_03975 PF02954 Bacterial regulatory protein, Fis family DYQ48_03975 PF00158 Sigma-54 interaction domain DYQ48_03980 PF00294 pfkB family carbohydrate kinase DYQ48_03990 PF04085 rod shape-determining protein MreC DYQ48_03995 PF04093 rod shape-determining protein MreD DYQ48_04000 PF00905 Penicillin binding protein transpeptidase domain DYQ48_04000 PF03717 Penicillin-binding Protein dimerisation domain DYQ48_04005 PF01098 Cell cycle protein DYQ48_04015 PF00295 Glycosyl hydrolases family 28 DYQ48_04020 PF13406 Transglycosylase SLT domain DYQ48_04025 PF05036 Sporulation related domain DYQ48_04025 PF03330 Lytic transglycolase DYQ48_04030 PF00768 D-alanyl-D-alanine carboxypeptidase DYQ48_04030 PF07943 Penicillin-binding protein 5, C-terminal domain DYQ48_04040 PF04359 Protein of unknown function (DUF493) DYQ48_04045 PF03099 Biotin/lipoate A/B protein ligase family DYQ48_04050 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DYQ48_04050 PF04055 Radical SAM superfamily DYQ48_04055 PF03572 Peptidase family S41 DYQ48_04055 PF00595 PDZ domain DYQ48_04055 PF11818 C-terminal domain of tail specific protease (DUF3340) DYQ48_04055 PF17804 Tail specific protease N-terminal domain DYQ48_04065 PF00293 NUDIX domain DYQ48_04065 PF01467 Cytidylyltransferase-like DYQ48_04100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYQ48_04100 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DYQ48_04105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DYQ48_04105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DYQ48_04110 PF04972 BON domain DYQ48_04115 PF08446 PAS fold DYQ48_04115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_04115 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_04115 PF00360 Phytochrome region DYQ48_04115 PF01590 GAF domain DYQ48_04120 PF00072 Response regulator receiver domain DYQ48_04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_04125 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_04130 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYQ48_04175 PF00263 Bacterial type II and III secretion system protein DYQ48_04175 PF03958 Bacterial type II/III secretion system short domain DYQ48_04180 PF00437 Type II/IV secretion system protein DYQ48_04185 PF00482 Type II secretion system (T2SS), protein F DYQ48_04190 PF07963 Prokaryotic N-terminal methylation motif DYQ48_04190 PF08334 Type II secretion system (T2SS), protein G DYQ48_04195 PF07963 Prokaryotic N-terminal methylation motif DYQ48_04195 PF12019 Type II transport protein GspH DYQ48_04200 PF07963 Prokaryotic N-terminal methylation motif DYQ48_04200 PF02501 Type II secretion system (T2SS), protein I DYQ48_04205 PF11612 Type II secretion system (T2SS), protein J DYQ48_04205 PF07963 Prokaryotic N-terminal methylation motif DYQ48_04210 PF03934 Type II secretion system (T2SS), protein K DYQ48_04235 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYQ48_04235 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DYQ48_04235 PF00703 Glycosyl hydrolases family 2 DYQ48_04235 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DYQ48_04235 PF16355 Domain of unknown function (DUF4982) DYQ48_04255 PF07690 Major Facilitator Superfamily DYQ48_04260 PF00356 Bacterial regulatory proteins, lacI family DYQ48_04265 PF01380 SIS domain DYQ48_04270 PF01979 Amidohydrolase family DYQ48_04280 PF01966 HD domain DYQ48_04280 PF01743 Poly A polymerase head domain DYQ48_04280 PF12627 Probable RNA and SrmB- binding site of polymerase A DYQ48_04290 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DYQ48_04290 PF01464 Transglycosylase SLT domain DYQ48_04295 PF00593 TonB dependent receptor DYQ48_04295 PF07715 TonB-dependent Receptor Plug Domain DYQ48_04305 PF00732 GMC oxidoreductase DYQ48_04305 PF05199 GMC oxidoreductase DYQ48_04310 PF00171 Aldehyde dehydrogenase family DYQ48_04315 PF02028 BCCT, betaine/carnitine/choline family transporter DYQ48_04325 PF01323 DSBA-like thioredoxin domain DYQ48_04335 PF00034 Cytochrome c DYQ48_04340 PF01926 50S ribosome-binding GTPase DYQ48_04345 PF04107 Glutamate-cysteine ligase family 2(GCS2) DYQ48_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_04350 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_04350 PF00672 HAMP domain DYQ48_04355 PF00486 Transcriptional regulatory protein, C terminal DYQ48_04355 PF00072 Response regulator receiver domain DYQ48_04370 PF07536 HWE histidine kinase DYQ48_04370 PF13581 Histidine kinase-like ATPase domain DYQ48_04370 PF13426 PAS domain DYQ48_04375 PF02583 Metal-sensitive transcriptional repressor DYQ48_04380 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_04380 PF00107 Zinc-binding dehydrogenase DYQ48_04385 PF04828 Glutathione-dependent formaldehyde-activating enzyme DYQ48_04390 PF00756 Putative esterase DYQ48_04395 PF00392 Bacterial regulatory proteins, gntR family DYQ48_04395 PF00155 Aminotransferase class I and II DYQ48_04400 PF02567 Phenazine biosynthesis-like protein DYQ48_04445 PF01979 Amidohydrolase family DYQ48_04450 PF01979 Amidohydrolase family DYQ48_04465 PF00462 Glutaredoxin DYQ48_04470 PF01522 Polysaccharide deacetylase DYQ48_04475 PF07715 TonB-dependent Receptor Plug Domain DYQ48_04475 PF00593 TonB dependent receptor DYQ48_04510 PF03412 Peptidase C39 family DYQ48_04510 PF00664 ABC transporter transmembrane region DYQ48_04510 PF00005 ABC transporter DYQ48_04530 PF01609 Transposase DDE domain DYQ48_04530 PF05598 Transposase domain (DUF772) DYQ48_04540 PF03193 RsgA GTPase DYQ48_04565 PF00128 Alpha amylase, catalytic domain DYQ48_04580 PF00356 Bacterial regulatory proteins, lacI family DYQ48_04585 PF00106 short chain dehydrogenase DYQ48_04590 PF03600 Citrate transporter DYQ48_04600 PF00072 Response regulator receiver domain DYQ48_04600 PF00486 Transcriptional regulatory protein, C terminal DYQ48_04605 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_04605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_04605 PF08521 Two-component sensor kinase N-terminal DYQ48_04615 PF00196 Bacterial regulatory proteins, luxR family DYQ48_04615 PF00072 Response regulator receiver domain DYQ48_04620 PF07715 TonB-dependent Receptor Plug Domain DYQ48_04620 PF00593 TonB dependent receptor DYQ48_04630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_04630 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_04640 PF00375 Sodium:dicarboxylate symporter family DYQ48_04645 PF01515 Phosphate acetyl/butaryl transferase DYQ48_04645 PF03949 Malic enzyme, NAD binding domain DYQ48_04645 PF00390 Malic enzyme, N-terminal domain DYQ48_04670 PF03279 Bacterial lipid A biosynthesis acyltransferase DYQ48_04675 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DYQ48_04685 PF02321 Outer membrane efflux protein DYQ48_04700 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_04700 PF17151 Periplasmic sensor domain DYQ48_04705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_04710 PF00330 Aconitase family (aconitate hydratase) DYQ48_04715 PF00694 Aconitase C-terminal domain DYQ48_04720 PF08241 Methyltransferase domain DYQ48_04725 PF00180 Isocitrate/isopropylmalate dehydrogenase DYQ48_04735 PF00682 HMGL-like DYQ48_04735 PF08502 LeuA allosteric (dimerisation) domain DYQ48_04740 PF00291 Pyridoxal-phosphate dependent enzyme DYQ48_04750 PF00205 Thiamine pyrophosphate enzyme, central domain DYQ48_04750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYQ48_04750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYQ48_04755 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DYQ48_04755 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DYQ48_04765 PF12729 Four helix bundle sensory module for signal transduction DYQ48_04765 PF00672 HAMP domain DYQ48_04765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_04770 PF07676 WD40-like Beta Propeller Repeat DYQ48_04770 PF00326 Prolyl oligopeptidase family DYQ48_04780 PF13667 ThiC-associated domain DYQ48_04780 PF01964 Radical SAM ThiC family DYQ48_04785 PF18500 CadC C-terminal domain 1 DYQ48_04785 PF00486 Transcriptional regulatory protein, C terminal DYQ48_04790 PF12833 Helix-turn-helix domain DYQ48_04795 PF07715 TonB-dependent Receptor Plug Domain DYQ48_04795 PF00593 TonB dependent receptor DYQ48_04805 PF00719 Inorganic pyrophosphatase DYQ48_04815 PF03030 Inorganic H+ pyrophosphatase DYQ48_04830 PF00365 Phosphofructokinase DYQ48_04840 PF08245 Mur ligase middle domain DYQ48_04840 PF02875 Mur ligase family, glutamate ligase domain DYQ48_04840 PF01225 Mur ligase family, catalytic domain DYQ48_04850 PF01062 Bestrophin, RFP-TM, chloride channel DYQ48_04860 PF01569 PAP2 superfamily DYQ48_04885 PF00520 Ion transport protein DYQ48_04885 PF00027 Cyclic nucleotide-binding domain DYQ48_04890 PF00202 Aminotransferase class-III DYQ48_04905 PF01593 Flavin containing amine oxidoreductase DYQ48_04910 PF00034 Cytochrome c DYQ48_04910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DYQ48_04920 PF00155 Aminotransferase class I and II DYQ48_04925 PF00127 Copper binding proteins, plastocyanin/azurin family DYQ48_04930 PF00196 Bacterial regulatory proteins, luxR family DYQ48_04930 PF17874 MalT-like TPR region DYQ48_04935 PF00202 Aminotransferase class-III DYQ48_04950 PF02581 Thiamine monophosphate synthase DYQ48_04955 PF00301 Rubredoxin DYQ48_04960 PF13369 Transglutaminase-like superfamily DYQ48_04970 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DYQ48_04980 PF01812 5-formyltetrahydrofolate cyclo-ligase family DYQ48_04990 PF05164 Cell division protein ZapA DYQ48_05000 PF03695 Uncharacterised protein family (UPF0149) DYQ48_05005 PF00557 Metallopeptidase family M24 DYQ48_05005 PF05195 Aminopeptidase P, N-terminal domain DYQ48_05010 PF00557 Metallopeptidase family M24 DYQ48_05025 PF04055 Radical SAM superfamily DYQ48_05025 PF06969 HemN C-terminal domain DYQ48_05030 PF01725 Ham1 family DYQ48_05035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYQ48_05040 PF01138 3' exoribonuclease family, domain 1 DYQ48_05040 PF03725 3' exoribonuclease family, domain 2 DYQ48_05045 PF08340 Domain of unknown function (DUF1732) DYQ48_05045 PF03755 YicC-like family, N-terminal region DYQ48_05050 PF00625 Guanylate kinase DYQ48_05055 PF01192 RNA polymerase Rpb6 DYQ48_05060 PF02824 TGS domain DYQ48_05060 PF04607 Region found in RelA / SpoT proteins DYQ48_05060 PF13291 ACT domain DYQ48_05065 PF01042 Endoribonuclease L-PSP DYQ48_05070 PF17191 RecG wedge domain DYQ48_05070 PF00271 Helicase conserved C-terminal domain DYQ48_05070 PF00270 DEAD/DEAH box helicase DYQ48_05075 PF01156 Inosine-uridine preferring nucleoside hydrolase DYQ48_05080 PF01197 Ribosomal protein L31 DYQ48_05085 PF00285 Citrate synthase, C-terminal domain DYQ48_05095 PF00905 Penicillin binding protein transpeptidase domain DYQ48_05095 PF00912 Transglycosylase DYQ48_05095 PF17092 Penicillin-binding protein OB-like domain DYQ48_05120 PF07660 Secretin and TonB N terminus short domain DYQ48_05120 PF03958 Bacterial type II/III secretion system short domain DYQ48_05120 PF00263 Bacterial type II and III secretion system protein DYQ48_05120 PF11741 AMIN domain DYQ48_05125 PF07726 ATPase family associated with various cellular activities (AAA) DYQ48_05125 PF17863 AAA lid domain DYQ48_05145 PF13519 von Willebrand factor type A domain DYQ48_05145 PF07584 Aerotolerance regulator N-terminal DYQ48_05160 PF00375 Sodium:dicarboxylate symporter family DYQ48_05165 PF02779 Transketolase, pyrimidine binding domain DYQ48_05165 PF00456 Transketolase, thiamine diphosphate binding domain DYQ48_05165 PF02780 Transketolase, C-terminal domain DYQ48_05175 PF00593 TonB dependent receptor DYQ48_05175 PF07715 TonB-dependent Receptor Plug Domain DYQ48_05180 PF03466 LysR substrate binding domain DYQ48_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_05200 PF01476 LysM domain DYQ48_05200 PF03734 L,D-transpeptidase catalytic domain DYQ48_05220 PF03965 Penicillinase repressor DYQ48_05235 PF03459 TOBE domain DYQ48_05235 PF00005 ABC transporter DYQ48_05240 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_05250 PF00753 Metallo-beta-lactamase superfamily DYQ48_05250 PF04273 Putative phosphatase (DUF442) DYQ48_05260 PF03922 OmpW family DYQ48_05275 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DYQ48_05275 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DYQ48_05300 PF00162 Phosphoglycerate kinase DYQ48_05310 PF02887 Pyruvate kinase, alpha/beta domain DYQ48_05310 PF00224 Pyruvate kinase, barrel domain DYQ48_05320 PF00274 Fructose-bisphosphate aldolase class-I DYQ48_05325 PF01661 Macro domain DYQ48_05335 PF00291 Pyridoxal-phosphate dependent enzyme DYQ48_05340 PF14824 Sirohaem biosynthesis protein central DYQ48_05340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ48_05340 PF10414 Sirohaem synthase dimerisation region DYQ48_05345 PF03466 LysR substrate binding domain DYQ48_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_05365 PF00072 Response regulator receiver domain DYQ48_05365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_05365 PF00672 HAMP domain DYQ48_05365 PF01627 Hpt domain DYQ48_05365 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_05385 PF01507 Phosphoadenosine phosphosulfate reductase family DYQ48_05390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYQ48_05390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYQ48_05395 PF00258 Flavodoxin DYQ48_05395 PF00175 Oxidoreductase NAD-binding domain DYQ48_05395 PF00667 FAD binding domain DYQ48_05400 PF01507 Phosphoadenosine phosphosulfate reductase family DYQ48_05405 PF00009 Elongation factor Tu GTP binding domain DYQ48_05410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_05410 PF00529 HlyD membrane-fusion protein of T1SS DYQ48_05415 PF00873 AcrB/AcrD/AcrF family DYQ48_05435 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYQ48_05435 PF00588 SpoU rRNA Methylase family DYQ48_05440 PF00135 Carboxylesterase family DYQ48_05450 PF10566 Glycoside hydrolase 97 DYQ48_05450 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DYQ48_05450 PF14508 Glycosyl-hydrolase 97 N-terminal DYQ48_05455 PF00703 Glycosyl hydrolases family 2 DYQ48_05455 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYQ48_05455 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain DYQ48_05465 PF00356 Bacterial regulatory proteins, lacI family DYQ48_05475 PF01741 Large-conductance mechanosensitive channel, MscL DYQ48_05480 PF01557 Fumarylacetoacetate (FAA) hydrolase family DYQ48_05495 PF03600 Citrate transporter DYQ48_05495 PF02080 TrkA-C domain DYQ48_05500 PF02390 Putative methyltransferase DYQ48_05510 PF05690 Thiazole biosynthesis protein ThiG DYQ48_05520 PF03797 Autotransporter beta-domain DYQ48_05520 PF00657 GDSL-like Lipase/Acylhydrolase DYQ48_05560 PF04002 RadC-like JAB domain DYQ48_05660 PF02534 Type IV secretory system Conjugative DNA transfer DYQ48_05685 PF03412 Peptidase C39 family DYQ48_05685 PF00005 ABC transporter DYQ48_05685 PF00664 ABC transporter transmembrane region DYQ48_05705 PF02794 RTX toxin acyltransferase family DYQ48_05730 PF06508 Queuosine biosynthesis protein QueC DYQ48_05775 PF09335 SNARE associated Golgi protein DYQ48_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_05780 PF02203 Tar ligand binding domain homologue DYQ48_05780 PF00672 HAMP domain DYQ48_05810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DYQ48_05810 PF00128 Alpha amylase, catalytic domain DYQ48_05815 PF18030 RimK PreATP-grasp domain DYQ48_05815 PF08443 RimK-like ATP-grasp domain DYQ48_05820 PF00486 Transcriptional regulatory protein, C terminal DYQ48_05820 PF00072 Response regulator receiver domain DYQ48_05825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_05825 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_05825 PF00989 PAS fold DYQ48_05825 PF11808 Phosphate regulon sensor protein PhoR DYQ48_05850 PF01121 Dephospho-CoA kinase DYQ48_05855 PF06750 Bacterial Peptidase A24 N-terminal domain DYQ48_05855 PF01478 Type IV leader peptidase family DYQ48_05860 PF00482 Type II secretion system (T2SS), protein F DYQ48_05865 PF07963 Prokaryotic N-terminal methylation motif DYQ48_05865 PF00114 Pilin (bacterial filament) DYQ48_05870 PF07963 Prokaryotic N-terminal methylation motif DYQ48_05870 PF00114 Pilin (bacterial filament) DYQ48_05875 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DYQ48_05875 PF00437 Type II/IV secretion system protein DYQ48_05880 PF00158 Sigma-54 interaction domain DYQ48_05880 PF02954 Bacterial regulatory protein, Fis family DYQ48_05880 PF00072 Response regulator receiver domain DYQ48_05885 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_05890 PF00549 CoA-ligase DYQ48_05890 PF08442 ATP-grasp domain DYQ48_05895 PF02629 CoA binding domain DYQ48_05895 PF00549 CoA-ligase DYQ48_05900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_05900 PF03466 LysR substrate binding domain DYQ48_05925 PF00795 Carbon-nitrogen hydrolase DYQ48_05925 PF02540 NAD synthase DYQ48_05935 PF13525 Outer membrane lipoprotein DYQ48_05940 PF00849 RNA pseudouridylate synthase DYQ48_05955 PF04134 Protein of unknown function, DUF393 DYQ48_05960 PF02203 Tar ligand binding domain homologue DYQ48_05960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_05960 PF00672 HAMP domain DYQ48_05965 PF01011 PQQ enzyme repeat DYQ48_05970 PF00982 Glycosyltransferase family 20 DYQ48_05975 PF00723 Glycosyl hydrolases family 15 DYQ48_05980 PF02358 Trehalose-phosphatase DYQ48_05985 PF07715 TonB-dependent Receptor Plug Domain DYQ48_05985 PF00593 TonB dependent receptor DYQ48_06035 PF01541 GIY-YIG catalytic domain DYQ48_06040 PF00593 TonB dependent receptor DYQ48_06040 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06045 PF00296 Luciferase-like monooxygenase DYQ48_06050 PF00248 Aldo/keto reductase family DYQ48_06055 PF09084 NMT1/THI5 like DYQ48_06060 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_06065 PF00005 ABC transporter DYQ48_06070 PF07724 AAA domain (Cdc48 subfamily) DYQ48_06070 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ48_06070 PF17871 AAA lid domain DYQ48_06070 PF02861 Clp amino terminal domain, pathogenicity island component DYQ48_06070 PF00004 ATPase family associated with various cellular activities (AAA) DYQ48_06075 PF01053 Cys/Met metabolism PLP-dependent enzyme DYQ48_06080 PF00593 TonB dependent receptor DYQ48_06080 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06090 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DYQ48_06095 PF02277 Phosphoribosyltransferase DYQ48_06110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYQ48_06110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYQ48_06115 PF04183 IucA / IucC family DYQ48_06115 PF06276 Ferric iron reductase FhuF-like transporter DYQ48_06120 PF07690 Major Facilitator Superfamily DYQ48_06125 PF06276 Ferric iron reductase FhuF-like transporter DYQ48_06125 PF04183 IucA / IucC family DYQ48_06135 PF00593 TonB dependent receptor DYQ48_06135 PF07660 Secretin and TonB N terminus short domain DYQ48_06135 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06145 PF02254 TrkA-N domain DYQ48_06145 PF00999 Sodium/hydrogen exchanger family DYQ48_06150 PF00067 Cytochrome P450 DYQ48_06155 PF00593 TonB dependent receptor DYQ48_06155 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06160 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06160 PF00593 TonB dependent receptor DYQ48_06165 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06165 PF00593 TonB dependent receptor DYQ48_06170 PF12848 ABC transporter DYQ48_06170 PF00005 ABC transporter DYQ48_06180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_06180 PF03466 LysR substrate binding domain DYQ48_06195 PF04185 Phosphoesterase family DYQ48_06195 PF05506 Domain of unknown function (DUF756) DYQ48_06210 PF07690 Major Facilitator Superfamily DYQ48_06230 PF02938 GAD domain DYQ48_06230 PF00152 tRNA synthetases class II (D, K and N) DYQ48_06230 PF01336 OB-fold nucleic acid binding domain DYQ48_06250 PF01709 Transcriptional regulator DYQ48_06255 PF02075 Crossover junction endodeoxyribonuclease RuvC DYQ48_06260 PF07499 RuvA, C-terminal domain DYQ48_06260 PF01330 RuvA N terminal domain DYQ48_06270 PF02705 K+ potassium transporter DYQ48_06275 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYQ48_06275 PF05491 RuvB C-terminal winged helix domain DYQ48_06275 PF17864 RuvB AAA lid domain DYQ48_06280 PF03061 Thioesterase superfamily DYQ48_06285 PF01618 MotA/TolQ/ExbB proton channel family DYQ48_06290 PF02472 Biopolymer transport protein ExbD/TolR DYQ48_06300 PF04052 TolB amino-terminal domain DYQ48_06300 PF07676 WD40-like Beta Propeller Repeat DYQ48_06305 PF00691 OmpA family DYQ48_06315 PF04055 Radical SAM superfamily DYQ48_06320 PF00248 Aldo/keto reductase family DYQ48_06380 PF13148 Protein of unknown function (DUF3987) DYQ48_06395 PF00589 Phage integrase family DYQ48_06395 PF13356 Arm DNA-binding domain DYQ48_06405 PF06508 Queuosine biosynthesis protein QueC DYQ48_06410 PF13581 Histidine kinase-like ATPase domain DYQ48_06410 PF07536 HWE histidine kinase DYQ48_06410 PF13426 PAS domain DYQ48_06445 PF01479 S4 domain DYQ48_06445 PF00849 RNA pseudouridylate synthase DYQ48_06465 PF09382 RQC domain DYQ48_06465 PF00270 DEAD/DEAH box helicase DYQ48_06465 PF16124 RecQ zinc-binding DYQ48_06465 PF00570 HRDC domain DYQ48_06465 PF00271 Helicase conserved C-terminal domain DYQ48_06470 PF00210 Ferritin-like domain DYQ48_06475 PF00271 Helicase conserved C-terminal domain DYQ48_06475 PF04408 Helicase associated domain (HA2) DYQ48_06475 PF11898 Domain of unknown function (DUF3418) DYQ48_06475 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DYQ48_06475 PF00270 DEAD/DEAH box helicase DYQ48_06485 PF02685 Glucokinase DYQ48_06495 PF13186 Iron-sulfur cluster-binding domain DYQ48_06495 PF04055 Radical SAM superfamily DYQ48_06500 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DYQ48_06505 PF03070 TENA/THI-4/PQQC family DYQ48_06510 PF12706 Beta-lactamase superfamily domain DYQ48_06515 PF08042 PqqA family DYQ48_06520 PF13291 ACT domain DYQ48_06520 PF04607 Region found in RelA / SpoT proteins DYQ48_06520 PF02824 TGS domain DYQ48_06535 PF00912 Transglycosylase DYQ48_06535 PF00905 Penicillin binding protein transpeptidase domain DYQ48_06535 PF14814 Bifunctional transglycosylase second domain DYQ48_06545 PF04851 Type III restriction enzyme, res subunit DYQ48_06545 PF13307 Helicase C-terminal domain DYQ48_06550 PF00814 Glycoprotease family DYQ48_06560 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DYQ48_06560 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DYQ48_06565 PF00072 Response regulator receiver domain DYQ48_06570 PF00072 Response regulator receiver domain DYQ48_06575 PF01584 CheW-like domain DYQ48_06580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_06580 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DYQ48_06585 PF01584 CheW-like domain DYQ48_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_06585 PF01627 Hpt domain DYQ48_06585 PF00072 Response regulator receiver domain DYQ48_06590 PF01339 CheB methylesterase DYQ48_06590 PF00072 Response regulator receiver domain DYQ48_06600 PF13302 Acetyltransferase (GNAT) domain DYQ48_06620 PF08281 Sigma-70, region 4 DYQ48_06620 PF04542 Sigma-70 region 2 DYQ48_06625 PF12034 Domain of unknown function (DUF3520) DYQ48_06625 PF00092 von Willebrand factor type A domain DYQ48_06625 PF12450 von Willebrand factor DYQ48_06635 PF01112 Asparaginase DYQ48_06640 PF03932 CutC family DYQ48_06685 PF01301 Glycosyl hydrolases family 35 DYQ48_06690 PF17678 Glycosyl hydrolase family 92 N-terminal domain DYQ48_06690 PF07971 Glycosyl hydrolase family 92 DYQ48_06700 PF02056 Family 4 glycosyl hydrolase DYQ48_06700 PF11975 Family 4 glycosyl hydrolase C-terminal domain DYQ48_06710 PF13520 Amino acid permease DYQ48_06715 PF01301 Glycosyl hydrolases family 35 DYQ48_06735 PF07691 PA14 domain DYQ48_06735 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ48_06735 PF14310 Fibronectin type III-like domain DYQ48_06735 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_06760 PF00704 Glycosyl hydrolases family 18 DYQ48_06760 PF01476 LysM domain DYQ48_06775 PF02685 Glucokinase DYQ48_06780 PF04452 RNA methyltransferase DYQ48_06785 PF00202 Aminotransferase class-III DYQ48_06790 PF00293 NUDIX domain DYQ48_06795 PF00459 Inositol monophosphatase family DYQ48_06800 PF03819 MazG nucleotide pyrophosphohydrolase domain DYQ48_06805 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DYQ48_06810 PF01571 Aminomethyltransferase folate-binding domain DYQ48_06810 PF08669 Glycine cleavage T-protein C-terminal barrel domain DYQ48_06815 PF01597 Glycine cleavage H-protein DYQ48_06840 PF01609 Transposase DDE domain DYQ48_06840 PF05598 Transposase domain (DUF772) DYQ48_06850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_06850 PF09317 Domain of unknown function (DUF1974) DYQ48_06850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_06855 PF00561 alpha/beta hydrolase fold DYQ48_06860 PF00440 Bacterial regulatory proteins, tetR family DYQ48_06875 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_06875 PF00672 HAMP domain DYQ48_06875 PF16527 Two-component sensor protein CpxA, periplasmic domain DYQ48_06880 PF00266 Aminotransferase class-V DYQ48_06910 PF05598 Transposase domain (DUF772) DYQ48_06910 PF01609 Transposase DDE domain DYQ48_06940 PF07715 TonB-dependent Receptor Plug Domain DYQ48_06940 PF00593 TonB dependent receptor DYQ48_06950 PF01430 Hsp33 protein DYQ48_06955 PF00912 Transglycosylase DYQ48_06960 PF00535 Glycosyl transferase family 2 DYQ48_06965 PF00478 IMP dehydrogenase / GMP reductase domain DYQ48_06965 PF00571 CBS domain DYQ48_06970 PF05170 AsmA family DYQ48_06975 PF03006 Haemolysin-III related DYQ48_06980 PF16658 Class II release factor RF3, C-terminal domain DYQ48_06980 PF00009 Elongation factor Tu GTP binding domain DYQ48_06985 PF01551 Peptidase family M23 DYQ48_06985 PF08460 Bacterial SH3 domain DYQ48_06990 PF00561 alpha/beta hydrolase fold DYQ48_06995 PF01053 Cys/Met metabolism PLP-dependent enzyme DYQ48_07000 PF00742 Homoserine dehydrogenase DYQ48_07000 PF03447 Homoserine dehydrogenase, NAD binding domain DYQ48_07000 PF00696 Amino acid kinase family DYQ48_07005 PF12697 Alpha/beta hydrolase family DYQ48_07010 PF03313 Serine dehydratase alpha chain DYQ48_07010 PF03315 Serine dehydratase beta chain DYQ48_07025 PF00313 'Cold-shock' DNA-binding domain DYQ48_07035 PF01292 Prokaryotic cytochrome b561 DYQ48_07040 PF04264 YceI-like domain DYQ48_07045 PF00072 Response regulator receiver domain DYQ48_07045 PF01627 Hpt domain DYQ48_07045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07045 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07050 PF01627 Hpt domain DYQ48_07050 PF00072 Response regulator receiver domain DYQ48_07050 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07055 PF17149 Periplasmic sensor domain found in signal transduction proteins DYQ48_07055 PF00672 HAMP domain DYQ48_07055 PF01627 Hpt domain DYQ48_07055 PF00072 Response regulator receiver domain DYQ48_07055 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07060 PF00672 HAMP domain DYQ48_07060 PF17149 Periplasmic sensor domain found in signal transduction proteins DYQ48_07060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07060 PF01627 Hpt domain DYQ48_07060 PF00072 Response regulator receiver domain DYQ48_07060 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07065 PF07690 Major Facilitator Superfamily DYQ48_07075 PF01175 Urocanase Rossmann-like domain DYQ48_07075 PF17391 Urocanase N-terminal domain DYQ48_07075 PF17392 Urocanase C-terminal domain DYQ48_07085 PF00221 Aromatic amino acid lyase DYQ48_07090 PF07969 Amidohydrolase family DYQ48_07125 PF01794 Ferric reductase like transmembrane component DYQ48_07130 PF00174 Oxidoreductase molybdopterin binding domain DYQ48_07135 PF00266 Aminotransferase class-V DYQ48_07140 PF01817 Chorismate mutase type II DYQ48_07140 PF01842 ACT domain DYQ48_07140 PF00800 Prephenate dehydratase DYQ48_07145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYQ48_07155 PF03544 Gram-negative bacterial TonB protein C-terminal DYQ48_07160 PF02403 Seryl-tRNA synthetase N-terminal domain DYQ48_07160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ48_07165 PF03466 LysR substrate binding domain DYQ48_07165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_07220 PF00672 HAMP domain DYQ48_07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_07220 PF02203 Tar ligand binding domain homologue DYQ48_07235 PF13188 PAS domain DYQ48_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07235 PF00072 Response regulator receiver domain DYQ48_07235 PF08448 PAS fold DYQ48_07235 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07240 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ48_07240 PF00072 Response regulator receiver domain DYQ48_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07240 PF01627 Hpt domain DYQ48_07240 PF00672 HAMP domain DYQ48_07245 PF06745 KaiC DYQ48_07250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07250 PF13426 PAS domain DYQ48_07250 PF00072 Response regulator receiver domain DYQ48_07265 PF05598 Transposase domain (DUF772) DYQ48_07265 PF01609 Transposase DDE domain DYQ48_07270 PF04328 Selenoprotein, putative DYQ48_07275 PF13722 5TM C-terminal transporter carbon starvation CstA DYQ48_07275 PF02554 Carbon starvation protein CstA DYQ48_07280 PF05726 Pirin C-terminal cupin domain DYQ48_07280 PF02678 Pirin DYQ48_07295 PF05726 Pirin C-terminal cupin domain DYQ48_07295 PF02678 Pirin DYQ48_07300 PF04493 Endonuclease V DYQ48_07305 PF00300 Histidine phosphatase superfamily (branch 1) DYQ48_07315 PF01431 Peptidase family M13 DYQ48_07315 PF05649 Peptidase family M13 DYQ48_07320 PF13091 PLD-like domain DYQ48_07325 PF01339 CheB methylesterase DYQ48_07325 PF00072 Response regulator receiver domain DYQ48_07330 PF01739 CheR methyltransferase, SAM binding domain DYQ48_07330 PF03705 CheR methyltransferase, all-alpha domain DYQ48_07335 PF03707 Bacterial signalling protein N terminal repeat DYQ48_07335 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_07335 PF00563 EAL domain DYQ48_07340 PF01584 CheW-like domain DYQ48_07345 PF00672 HAMP domain DYQ48_07345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_07350 PF09078 CheY binding DYQ48_07350 PF01627 Hpt domain DYQ48_07350 PF01584 CheW-like domain DYQ48_07350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07350 PF02895 Signal transducing histidine kinase, homodimeric domain DYQ48_07360 PF17757 UvrB interaction domain DYQ48_07360 PF03461 TRCF domain DYQ48_07360 PF00271 Helicase conserved C-terminal domain DYQ48_07360 PF00270 DEAD/DEAH box helicase DYQ48_07360 PF02559 CarD-like/TRCF domain DYQ48_07375 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DYQ48_07380 PF00072 Response regulator receiver domain DYQ48_07380 PF00486 Transcriptional regulatory protein, C terminal DYQ48_07385 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_07385 PF00672 HAMP domain DYQ48_07395 PF06123 Inner membrane protein CreD DYQ48_07420 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYQ48_07425 PF01475 Ferric uptake regulator family DYQ48_07440 PF00529 HlyD membrane-fusion protein of T1SS DYQ48_07440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_07445 PF00873 AcrB/AcrD/AcrF family DYQ48_07450 PF02321 Outer membrane efflux protein DYQ48_07455 PF00440 Bacterial regulatory proteins, tetR family DYQ48_07455 PF16859 Tetracyclin repressor-like, C-terminal domain DYQ48_07460 PF00248 Aldo/keto reductase family DYQ48_07465 PF03466 LysR substrate binding domain DYQ48_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_07485 PF03466 LysR substrate binding domain DYQ48_07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_07490 PF07690 Major Facilitator Superfamily DYQ48_07495 PF00248 Aldo/keto reductase family DYQ48_07500 PF00082 Subtilase family DYQ48_07500 PF02225 PA domain DYQ48_07500 PF05922 Peptidase inhibitor I9 DYQ48_07500 PF13860 FlgD Ig-like domain DYQ48_07510 PF00082 Subtilase family DYQ48_07530 PF00593 TonB dependent receptor DYQ48_07530 PF07715 TonB-dependent Receptor Plug Domain DYQ48_07545 PF00654 Voltage gated chloride channel DYQ48_07555 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYQ48_07555 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYQ48_07560 PF02805 Metal binding domain of Ada DYQ48_07560 PF06029 AlkA N-terminal domain DYQ48_07560 PF00730 HhH-GPD superfamily base excision DNA repair protein DYQ48_07560 PF12833 Helix-turn-helix domain DYQ48_07585 PF01494 FAD binding domain DYQ48_07605 PF04542 Sigma-70 region 2 DYQ48_07605 PF08281 Sigma-70, region 4 DYQ48_07610 PF00271 Helicase conserved C-terminal domain DYQ48_07610 PF00270 DEAD/DEAH box helicase DYQ48_07610 PF03880 DbpA RNA binding domain DYQ48_07615 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_07615 PF00563 EAL domain DYQ48_07615 PF08448 PAS fold DYQ48_07620 PF01479 S4 domain DYQ48_07620 PF00849 RNA pseudouridylate synthase DYQ48_07625 PF00072 Response regulator receiver domain DYQ48_07625 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_07640 PF03737 Aldolase/RraA DYQ48_07645 PF00144 Beta-lactamase DYQ48_07650 PF00999 Sodium/hydrogen exchanger family DYQ48_07660 PF00664 ABC transporter transmembrane region DYQ48_07660 PF00005 ABC transporter DYQ48_07690 PF03466 LysR substrate binding domain DYQ48_07690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_07705 PF04070 Domain of unknown function (DUF378) DYQ48_07715 PF03466 LysR substrate binding domain DYQ48_07715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_07730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_07730 PF00529 HlyD membrane-fusion protein of T1SS DYQ48_07735 PF00873 AcrB/AcrD/AcrF family DYQ48_07740 PF00106 short chain dehydrogenase DYQ48_07745 PF02321 Outer membrane efflux protein DYQ48_07750 PF08448 PAS fold DYQ48_07750 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_07760 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_07810 PF00082 Subtilase family DYQ48_07815 PF01668 SmpB protein DYQ48_07825 PF03658 RnfH family Ubiquitin DYQ48_07830 PF04355 SmpA / OmlA family DYQ48_07835 PF01475 Ferric uptake regulator family DYQ48_07840 PF02463 RecF/RecN/SMC N terminal domain DYQ48_07845 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DYQ48_07845 PF01628 HrcA protein C terminal domain DYQ48_07850 PF01025 GrpE DYQ48_07855 PF00012 Hsp70 protein DYQ48_07860 PF00226 DnaJ domain DYQ48_07860 PF00684 DnaJ central domain DYQ48_07860 PF01556 DnaJ C terminal domain DYQ48_07865 PF08543 Phosphomethylpyrimidine kinase DYQ48_07890 PF00005 ABC transporter DYQ48_07890 PF00664 ABC transporter transmembrane region DYQ48_07890 PF03412 Peptidase C39 family DYQ48_07895 PF03466 LysR substrate binding domain DYQ48_07895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_07900 PF00664 ABC transporter transmembrane region DYQ48_07900 PF00005 ABC transporter DYQ48_07905 PF01205 Uncharacterized protein family UPF0029 DYQ48_07910 PF03641 Possible lysine decarboxylase DYQ48_07915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ48_07915 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_07920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYQ48_07920 PF00364 Biotin-requiring enzyme DYQ48_07920 PF02817 e3 binding domain DYQ48_07925 PF02779 Transketolase, pyrimidine binding domain DYQ48_07925 PF16078 2-oxoglutarate dehydrogenase N-terminus DYQ48_07925 PF16870 2-oxoglutarate dehydrogenase C-terminal DYQ48_07925 PF00676 Dehydrogenase E1 component DYQ48_07935 PF08007 Cupin superfamily protein DYQ48_07950 PF00206 Lyase DYQ48_07950 PF08328 Adenylosuccinate lyase C-terminal DYQ48_07955 PF01595 Cyclin M transmembrane N-terminal domain DYQ48_07955 PF03471 Transporter associated domain DYQ48_07955 PF00571 CBS domain DYQ48_07960 PF10415 Fumarase C C-terminus DYQ48_07960 PF00206 Lyase DYQ48_07985 PF00005 ABC transporter DYQ48_07990 PF00392 Bacterial regulatory proteins, gntR family DYQ48_08000 PF00255 Glutathione peroxidase DYQ48_08005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ48_08005 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYQ48_08010 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYQ48_08010 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYQ48_08010 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYQ48_08015 PF04102 SlyX DYQ48_08030 PF00356 Bacterial regulatory proteins, lacI family DYQ48_08040 PF00294 pfkB family carbohydrate kinase DYQ48_08050 PF02310 B12 binding domain DYQ48_08050 PF02574 Homocysteine S-methyltransferase DYQ48_08050 PF02607 B12 binding domain DYQ48_08050 PF00809 Pterin binding enzyme DYQ48_08050 PF02965 Vitamin B12 dependent methionine synthase, activation domain DYQ48_08055 PF02574 Homocysteine S-methyltransferase DYQ48_08055 PF00809 Pterin binding enzyme DYQ48_08055 PF02965 Vitamin B12 dependent methionine synthase, activation domain DYQ48_08055 PF02607 B12 binding domain DYQ48_08055 PF02310 B12 binding domain DYQ48_08060 PF01209 ubiE/COQ5 methyltransferase family DYQ48_08065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_08065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_08065 PF02770 Acyl-CoA dehydrogenase, middle domain DYQ48_08080 PF17876 Cold shock domain DYQ48_08080 PF08206 Ribonuclease B OB domain DYQ48_08080 PF08461 Ribonuclease R winged-helix domain DYQ48_08080 PF00773 RNB domain DYQ48_08080 PF00575 S1 RNA binding domain DYQ48_08090 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYQ48_08090 PF00588 SpoU rRNA Methylase family DYQ48_08095 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_08095 PF07694 5TMR of 5TMR-LYT DYQ48_08100 PF00929 Exonuclease DYQ48_08110 PF01895 PhoU domain DYQ48_08115 PF00005 ABC transporter DYQ48_08120 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_08125 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_08130 PF12849 PBP superfamily domain DYQ48_08135 PF12849 PBP superfamily domain DYQ48_08150 PF00484 Carbonic anhydrase DYQ48_08155 PF00916 Sulfate permease family DYQ48_08155 PF01740 STAS domain DYQ48_08165 PF00730 HhH-GPD superfamily base excision DNA repair protein DYQ48_08165 PF00633 Helix-hairpin-helix motif DYQ48_08165 PF10576 Iron-sulfur binding domain of endonuclease III DYQ48_08175 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_08180 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYQ48_08180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ48_08185 PF00293 NUDIX domain DYQ48_08190 PF00581 Rhodanese-like domain DYQ48_08230 PF01170 Putative RNA methylase family UPF0020 DYQ48_08230 PF02926 THUMP domain DYQ48_08230 PF10672 S-adenosylmethionine-dependent methyltransferase DYQ48_08235 PF01513 ATP-NAD kinase DYQ48_08260 PF00929 Exonuclease DYQ48_08260 PF08411 Exonuclease C-terminal DYQ48_08265 PF01494 FAD binding domain DYQ48_08270 PF00266 Aminotransferase class-V DYQ48_08280 PF06052 3-hydroxyanthranilic acid dioxygenase DYQ48_08285 PF00484 Carbonic anhydrase DYQ48_08290 PF04299 Putative FMN-binding domain DYQ48_08305 PF00152 tRNA synthetases class II (D, K and N) DYQ48_08305 PF01336 OB-fold nucleic acid binding domain DYQ48_08310 PF01521 Iron-sulphur cluster biosynthesis DYQ48_08315 PF01250 Ribosomal protein S6 DYQ48_08320 PF01084 Ribosomal protein S18 DYQ48_08325 PF01281 Ribosomal protein L9, N-terminal domain DYQ48_08325 PF03948 Ribosomal protein L9, C-terminal domain DYQ48_08330 PF02463 RecF/RecN/SMC N terminal domain DYQ48_08335 PF04354 ZipA, C-terminal FtsZ-binding domain DYQ48_08340 PF00155 Aminotransferase class I and II DYQ48_08345 PF12826 Helix-hairpin-helix motif DYQ48_08345 PF01653 NAD-dependent DNA ligase adenylation domain DYQ48_08345 PF03120 NAD-dependent DNA ligase OB-fold domain DYQ48_08345 PF00533 BRCA1 C Terminus (BRCT) domain DYQ48_08345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DYQ48_08350 PF00152 tRNA synthetases class II (D, K and N) DYQ48_08360 PF01008 Initiation factor 2 subunit family DYQ48_08365 PF00521 DNA gyrase/topoisomerase IV, subunit A DYQ48_08365 PF03989 DNA gyrase C-terminal domain, beta-propeller DYQ48_08395 PF00483 Nucleotidyl transferase DYQ48_08400 PF01636 Phosphotransferase enzyme family DYQ48_08410 PF01546 Peptidase family M20/M25/M40 DYQ48_08410 PF07687 Peptidase dimerisation domain DYQ48_08425 PF00258 Flavodoxin DYQ48_08425 PF00667 FAD binding domain DYQ48_08425 PF00175 Oxidoreductase NAD-binding domain DYQ48_08430 PF02424 ApbE family DYQ48_08455 PF13640 2OG-Fe(II) oxygenase superfamily DYQ48_08455 PF18331 PKHD-type hydroxylase C-terminal domain DYQ48_08460 PF00593 TonB dependent receptor DYQ48_08460 PF07715 TonB-dependent Receptor Plug Domain DYQ48_08470 PF00355 Rieske [2Fe-2S] domain DYQ48_08475 PF00583 Acetyltransferase (GNAT) family DYQ48_08480 PF00266 Aminotransferase class-V DYQ48_08485 PF01458 Uncharacterized protein family (UPF0051) DYQ48_08490 PF00005 ABC transporter DYQ48_08495 PF01458 Uncharacterized protein family (UPF0051) DYQ48_08500 PF02082 Transcriptional regulator DYQ48_08525 PF01551 Peptidase family M23 DYQ48_08525 PF01476 LysM domain DYQ48_08535 PF14748 Pyrroline-5-carboxylate reductase dimerisation DYQ48_08535 PF03807 NADP oxidoreductase coenzyme F420-dependent DYQ48_08540 PF01168 Alanine racemase, N-terminal domain DYQ48_08550 PF00437 Type II/IV secretion system protein DYQ48_08555 PF00437 Type II/IV secretion system protein DYQ48_08565 PF03352 Methyladenine glycosylase DYQ48_08565 PF13673 Acetyltransferase (GNAT) domain DYQ48_08565 PF00958 GMP synthase C terminal domain DYQ48_08565 PF13302 Acetyltransferase (GNAT) domain DYQ48_08565 PF00117 Glutamine amidotransferase class-I DYQ48_08575 PF02622 Uncharacterized ACR, COG1678 DYQ48_08580 PF03652 Holliday junction resolvase DYQ48_08585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYQ48_08585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYQ48_08590 PF02566 OsmC-like protein DYQ48_08600 PF02567 Phenazine biosynthesis-like protein DYQ48_08605 PF02567 Phenazine biosynthesis-like protein DYQ48_08610 PF00696 Amino acid kinase family DYQ48_08610 PF01842 ACT domain DYQ48_08625 PF08245 Mur ligase middle domain DYQ48_08630 PF00348 Polyprenyl synthetase DYQ48_08635 PF00436 Single-strand binding protein family DYQ48_08640 PF00593 TonB dependent receptor DYQ48_08640 PF07715 TonB-dependent Receptor Plug Domain DYQ48_08645 PF04052 TolB amino-terminal domain DYQ48_08645 PF07676 WD40-like Beta Propeller Repeat DYQ48_08650 PF00360 Phytochrome region DYQ48_08650 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_08650 PF01590 GAF domain DYQ48_08650 PF00563 EAL domain DYQ48_08655 PF10518 TAT (twin-arginine translocation) pathway signal sequence DYQ48_08655 PF01799 [2Fe-2S] binding domain DYQ48_08655 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ48_08660 PF03450 CO dehydrogenase flavoprotein C-terminal domain DYQ48_08660 PF00941 FAD binding domain in molybdopterin dehydrogenase DYQ48_08665 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DYQ48_08665 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DYQ48_08670 PF13478 XdhC Rossmann domain DYQ48_08670 PF02625 XdhC and CoxI family DYQ48_08675 PF12804 MobA-like NTP transferase domain DYQ48_08700 PF13419 Haloacid dehalogenase-like hydrolase DYQ48_08730 PF03918 Cytochrome C biogenesis protein DYQ48_08735 PF08534 Redoxin DYQ48_08740 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DYQ48_08740 PF01578 Cytochrome C assembly protein DYQ48_08745 PF03100 CcmE DYQ48_08750 PF04995 Heme exporter protein D (CcmD) DYQ48_08755 PF01578 Cytochrome C assembly protein DYQ48_08760 PF00082 Subtilase family DYQ48_08770 PF08281 Sigma-70, region 4 DYQ48_08770 PF04542 Sigma-70 region 2 DYQ48_08780 PF00034 Cytochrome c DYQ48_08795 PF05523 WxcM-like, C-terminal DYQ48_08800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ48_08805 PF01943 Polysaccharide biosynthesis protein DYQ48_08810 PF00535 Glycosyl transferase family 2 DYQ48_08840 PF00534 Glycosyl transferases group 1 DYQ48_08840 PF13439 Glycosyltransferase Family 4 DYQ48_08845 PF00534 Glycosyl transferases group 1 DYQ48_08845 PF13579 Glycosyl transferase 4-like domain DYQ48_08865 PF00664 ABC transporter transmembrane region DYQ48_08865 PF00005 ABC transporter DYQ48_08870 PF07690 Major Facilitator Superfamily DYQ48_08880 PF00296 Luciferase-like monooxygenase DYQ48_08895 PF00571 CBS domain DYQ48_08895 PF03471 Transporter associated domain DYQ48_08895 PF01595 Cyclin M transmembrane N-terminal domain DYQ48_08910 PF01384 Phosphate transporter family DYQ48_08925 PF01751 Toprim domain DYQ48_08925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_08925 PF00986 DNA gyrase B subunit, carboxyl terminus DYQ48_08925 PF00204 DNA gyrase B DYQ48_08935 PF06418 CTP synthase N-terminus DYQ48_08935 PF00117 Glutamine amidotransferase class-I DYQ48_08940 PF00793 DAHP synthetase I family DYQ48_08950 PF00113 Enolase, C-terminal TIM barrel domain DYQ48_08950 PF03952 Enolase, N-terminal domain DYQ48_08955 PF04977 Septum formation initiator DYQ48_08960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DYQ48_08965 PF02542 YgbB family DYQ48_08970 PF01142 tRNA pseudouridine synthase D (TruD) DYQ48_08975 PF01713 Smr domain DYQ48_08980 PF01975 Survival protein SurE DYQ48_08990 PF09335 SNARE associated Golgi protein DYQ48_08995 PF01476 LysM domain DYQ48_08995 PF01551 Peptidase family M23 DYQ48_09005 PF01985 CRS1 / YhbY (CRM) domain DYQ48_09010 PF01728 FtsJ-like methyltransferase DYQ48_09015 PF01434 Peptidase family M41 DYQ48_09015 PF06480 FtsH Extracellular DYQ48_09015 PF17862 AAA+ lid domain DYQ48_09015 PF00004 ATPase family associated with various cellular activities (AAA) DYQ48_09020 PF00809 Pterin binding enzyme DYQ48_09030 PF17209 Hfq protein DYQ48_09035 PF13167 GTP-binding GTPase N-terminal DYQ48_09035 PF16360 GTP-binding GTPase Middle Region DYQ48_09035 PF01926 50S ribosome-binding GTPase DYQ48_09040 PF02464 Competence-damaged protein DYQ48_09045 PF07715 TonB-dependent Receptor Plug Domain DYQ48_09045 PF00593 TonB dependent receptor DYQ48_09050 PF03109 ABC1 family DYQ48_09055 PF01726 LexA DNA binding domain DYQ48_09055 PF00717 Peptidase S24-like DYQ48_09060 PF00154 recA bacterial DNA recombination protein DYQ48_09065 PF02631 RecX family DYQ48_09070 PF02272 DHHA1 domain DYQ48_09070 PF01411 tRNA synthetases class II (A) DYQ48_09070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYQ48_09075 PF02599 Global regulator protein family DYQ48_09085 PF13426 PAS domain DYQ48_09085 PF08447 PAS fold DYQ48_09085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09090 PF02678 Pirin DYQ48_09090 PF17954 Quercetinase C-terminal cupin domain DYQ48_09115 PF08543 Phosphomethylpyrimidine kinase DYQ48_09115 PF02581 Thiamine monophosphate synthase DYQ48_09130 PF13638 PIN domain DYQ48_09130 PF02562 PhoH-like protein DYQ48_09135 PF00578 AhpC/TSA family DYQ48_09150 PF00701 Dihydrodipicolinate synthetase family DYQ48_09160 PF11953 Domain of unknown function (DUF3470) DYQ48_09160 PF00037 4Fe-4S binding domain DYQ48_09170 PF08450 SMP-30/Gluconolactonase/LRE-like region DYQ48_09175 PF13378 Enolase C-terminal domain-like DYQ48_09175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYQ48_09180 PF01081 KDPG and KHG aldolase DYQ48_09185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_09185 PF03466 LysR substrate binding domain DYQ48_09200 PF03442 Carbohydrate binding domain X2 DYQ48_09200 PF00942 Cellulose binding domain DYQ48_09215 PF16338 Domain of unknown function (DUF4968) DYQ48_09215 PF17137 Domain of unknown function (DUF5110) DYQ48_09215 PF01055 Glycosyl hydrolases family 31 DYQ48_09225 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYQ48_09225 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYQ48_09235 PF00083 Sugar (and other) transporter DYQ48_09255 PF01520 N-acetylmuramoyl-L-alanine amidase DYQ48_09260 PF02649 Type I GTP cyclohydrolase folE2 DYQ48_09270 PF12626 Polymerase A arginine-rich C-terminus DYQ48_09270 PF01743 Poly A polymerase head domain DYQ48_09270 PF12627 Probable RNA and SrmB- binding site of polymerase A DYQ48_09275 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYQ48_09280 PF02548 Ketopantoate hydroxymethyltransferase DYQ48_09285 PF02569 Pantoate-beta-alanine ligase DYQ48_09290 PF02261 Aspartate decarboxylase DYQ48_09295 PF00342 Phosphoglucose isomerase DYQ48_09325 PF14310 Fibronectin type III-like domain DYQ48_09325 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_09325 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ48_09335 PF00474 Sodium:solute symporter family DYQ48_09340 PF00563 EAL domain DYQ48_09340 PF00360 Phytochrome region DYQ48_09340 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_09340 PF01590 GAF domain DYQ48_09345 PF02013 Cellulose or protein binding domain DYQ48_09345 PF00150 Cellulase (glycosyl hydrolase family 5) DYQ48_09355 PF00072 Response regulator receiver domain DYQ48_09365 PF04551 GcpE protein DYQ48_09370 PF01569 PAP2 superfamily DYQ48_09375 PF07690 Major Facilitator Superfamily DYQ48_09385 PF00892 EamA-like transporter family DYQ48_09390 PF01565 FAD binding domain DYQ48_09390 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DYQ48_09395 PF01180 Dihydroorotate dehydrogenase DYQ48_09410 PF00171 Aldehyde dehydrogenase family DYQ48_09455 PF00535 Glycosyl transferase family 2 DYQ48_09460 PF14883 Hypothetical glycosyl hydrolase family 13 DYQ48_09460 PF01522 Polysaccharide deacetylase DYQ48_09470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DYQ48_09470 PF17287 POTRA domain DYQ48_09470 PF08479 POTRA domain, ShlB-type DYQ48_09490 PF03073 TspO/MBR family DYQ48_09495 PF00696 Amino acid kinase family DYQ48_09495 PF01842 ACT domain DYQ48_09495 PF00742 Homoserine dehydrogenase DYQ48_09495 PF13840 ACT domain DYQ48_09495 PF03447 Homoserine dehydrogenase, NAD binding domain DYQ48_09500 PF08544 GHMP kinases C terminal DYQ48_09500 PF00288 GHMP kinases N terminal domain DYQ48_09510 PF00291 Pyridoxal-phosphate dependent enzyme DYQ48_09510 PF14821 Threonine synthase N terminus DYQ48_09520 PF00027 Cyclic nucleotide-binding domain DYQ48_09520 PF13545 Crp-like helix-turn-helix domain DYQ48_09525 PF03129 Anticodon binding domain DYQ48_09525 PF13393 Histidyl-tRNA synthetase DYQ48_09540 PF08029 HisG, C-terminal domain DYQ48_09540 PF01634 ATP phosphoribosyltransferase DYQ48_09545 PF00815 Histidinol dehydrogenase DYQ48_09550 PF00155 Aminotransferase class I and II DYQ48_09555 PF00475 Imidazoleglycerol-phosphate dehydratase DYQ48_09560 PF00117 Glutamine amidotransferase class-I DYQ48_09565 PF00977 Histidine biosynthesis protein DYQ48_09570 PF00977 Histidine biosynthesis protein DYQ48_09575 PF01502 Phosphoribosyl-AMP cyclohydrolase DYQ48_09575 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DYQ48_09600 PF03079 ARD/ARD' family DYQ48_09605 PF00596 Class II Aldolase and Adducin N-terminal domain DYQ48_09615 PF13520 Amino acid permease DYQ48_09620 PF13520 Amino acid permease DYQ48_09635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYQ48_09635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYQ48_09640 PF02913 FAD linked oxidases, C-terminal domain DYQ48_09640 PF01565 FAD binding domain DYQ48_09660 PF01132 Elongation factor P (EF-P) OB domain DYQ48_09660 PF08207 Elongation factor P (EF-P) KOW-like domain DYQ48_09660 PF09285 Elongation factor P, C-terminal DYQ48_09665 PF00106 short chain dehydrogenase DYQ48_09670 PF00682 HMGL-like DYQ48_09675 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_09685 PF07670 Nucleoside recognition DYQ48_09685 PF07664 Ferrous iron transport protein B C terminus DYQ48_09685 PF02421 Ferrous iron transport protein B DYQ48_09695 PF00155 Aminotransferase class I and II DYQ48_09700 PF03475 3-alpha domain DYQ48_09700 PF03473 MOSC domain DYQ48_09705 PF01113 Dihydrodipicolinate reductase, N-terminus DYQ48_09705 PF05173 Dihydrodipicolinate reductase, C-terminus DYQ48_09710 PF00117 Glutamine amidotransferase class-I DYQ48_09710 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DYQ48_09720 PF02142 MGS-like domain DYQ48_09720 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DYQ48_09720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYQ48_09725 PF03449 Transcription elongation factor, N-terminal DYQ48_09725 PF01272 Transcription elongation factor, GreA/GreB, C-term DYQ48_09735 PF01368 DHH family DYQ48_09735 PF02272 DHHA1 domain DYQ48_09735 PF17768 RecJ OB domain DYQ48_09750 PF00072 Response regulator receiver domain DYQ48_09750 PF04397 LytTr DNA-binding domain DYQ48_09760 PF00152 tRNA synthetases class II (D, K and N) DYQ48_09760 PF01336 OB-fold nucleic acid binding domain DYQ48_09765 PF00072 Response regulator receiver domain DYQ48_09770 PF01627 Hpt domain DYQ48_09770 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_09770 PF00072 Response regulator receiver domain DYQ48_09775 PF00072 Response regulator receiver domain DYQ48_09775 PF01627 Hpt domain DYQ48_09775 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_09775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_09785 PF13193 AMP-binding enzyme C-terminal domain DYQ48_09785 PF00501 AMP-binding enzyme DYQ48_09795 PF00694 Aconitase C-terminal domain DYQ48_09795 PF00330 Aconitase family (aconitate hydratase) DYQ48_09810 PF06434 Aconitate hydratase 2 N-terminus DYQ48_09810 PF11791 Aconitate B N-terminal domain DYQ48_09810 PF00330 Aconitase family (aconitate hydratase) DYQ48_09815 PF00561 alpha/beta hydrolase fold DYQ48_09830 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_09830 PF03707 Bacterial signalling protein N terminal repeat DYQ48_09830 PF00563 EAL domain DYQ48_09835 PF01339 CheB methylesterase DYQ48_09835 PF00072 Response regulator receiver domain DYQ48_09840 PF03975 CheD chemotactic sensory transduction DYQ48_09845 PF03705 CheR methyltransferase, all-alpha domain DYQ48_09845 PF01739 CheR methyltransferase, SAM binding domain DYQ48_09850 PF00672 HAMP domain DYQ48_09850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09850 PF02203 Tar ligand binding domain homologue DYQ48_09860 PF01584 CheW-like domain DYQ48_09865 PF07317 Flagellar regulator YcgR DYQ48_09865 PF07238 PilZ domain DYQ48_09875 PF02203 Tar ligand binding domain homologue DYQ48_09875 PF00672 HAMP domain DYQ48_09875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09880 PF00672 HAMP domain DYQ48_09880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09880 PF02203 Tar ligand binding domain homologue DYQ48_09885 PF00672 HAMP domain DYQ48_09885 PF02203 Tar ligand binding domain homologue DYQ48_09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09890 PF00672 HAMP domain DYQ48_09890 PF02203 Tar ligand binding domain homologue DYQ48_09890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09895 PF00672 HAMP domain DYQ48_09895 PF02203 Tar ligand binding domain homologue DYQ48_09895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09900 PF00672 HAMP domain DYQ48_09900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09905 PF00672 HAMP domain DYQ48_09905 PF02203 Tar ligand binding domain homologue DYQ48_09910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09910 PF17200 Single Cache domain 2 DYQ48_09910 PF00672 HAMP domain DYQ48_09930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_09930 PF02203 Tar ligand binding domain homologue DYQ48_09930 PF00672 HAMP domain DYQ48_09940 PF09078 CheY binding DYQ48_09940 PF01584 CheW-like domain DYQ48_09940 PF02895 Signal transducing histidine kinase, homodimeric domain DYQ48_09940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_09940 PF01627 Hpt domain DYQ48_09945 PF00072 Response regulator receiver domain DYQ48_09955 PF01584 CheW-like domain DYQ48_09960 PF13614 AAA domain DYQ48_09965 PF13677 Membrane MotB of proton-channel complex MotA/MotB DYQ48_09965 PF00691 OmpA family DYQ48_09970 PF01618 MotA/TolQ/ExbB proton channel family DYQ48_09980 PF01381 Helix-turn-helix DYQ48_09985 PF07194 P2 response regulator binding domain DYQ48_09985 PF01584 CheW-like domain DYQ48_09985 PF02895 Signal transducing histidine kinase, homodimeric domain DYQ48_09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_09985 PF01627 Hpt domain DYQ48_09990 PF04344 Chemotaxis phosphatase, CheZ DYQ48_09995 PF00072 Response regulator receiver domain DYQ48_10000 PF04539 Sigma-70 region 3 DYQ48_10000 PF04542 Sigma-70 region 2 DYQ48_10000 PF04545 Sigma-70, region 4 DYQ48_10005 PF10609 NUBPL iron-transfer P-loop NTPase DYQ48_10010 PF00448 SRP54-type protein, GTPase domain DYQ48_10020 PF00771 FHIPEP family DYQ48_10025 PF01312 FlhB HrpN YscU SpaS Family DYQ48_10030 PF03707 Bacterial signalling protein N terminal repeat DYQ48_10030 PF00563 EAL domain DYQ48_10030 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_10035 PF00563 EAL domain DYQ48_10035 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_10035 PF03707 Bacterial signalling protein N terminal repeat DYQ48_10040 PF03707 Bacterial signalling protein N terminal repeat DYQ48_10040 PF00563 EAL domain DYQ48_10040 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_10040 PF13188 PAS domain DYQ48_10045 PF01311 Bacterial export proteins, family 1 DYQ48_10050 PF01313 Bacterial export proteins, family 3 DYQ48_10055 PF00813 FliP family DYQ48_10060 PF04347 Flagellar biosynthesis protein, FliO DYQ48_10065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYQ48_10070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DYQ48_10070 PF02154 Flagellar motor switch protein FliM DYQ48_10090 PF18269 T3SS EscN ATPase C-terminal domain DYQ48_10090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ48_10100 PF14842 FliG N-terminal domain DYQ48_10100 PF14841 FliG middle domain DYQ48_10100 PF01706 FliG C-terminal domain DYQ48_10105 PF01514 Secretory protein of YscJ/FliF family DYQ48_10105 PF08345 Flagellar M-ring protein C-terminal DYQ48_10110 PF02049 Flagellar hook-basal body complex protein FliE DYQ48_10115 PF05598 Transposase domain (DUF772) DYQ48_10115 PF01609 Transposase DDE domain DYQ48_10135 PF00535 Glycosyl transferase family 2 DYQ48_10135 PF00534 Glycosyl transferases group 1 DYQ48_10140 PF04230 Polysaccharide pyruvyl transferase DYQ48_10175 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ48_10175 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYQ48_10185 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ48_10190 PF01590 GAF domain DYQ48_10190 PF02954 Bacterial regulatory protein, Fis family DYQ48_10190 PF00158 Sigma-54 interaction domain DYQ48_10195 PF00072 Response regulator receiver domain DYQ48_10195 PF01339 CheB methylesterase DYQ48_10200 PF00309 Sigma-54 factor, Activator interacting domain (AID) DYQ48_10200 PF04552 Sigma-54, DNA binding domain DYQ48_10200 PF04963 Sigma-54 factor, core binding domain DYQ48_10205 PF00196 Bacterial regulatory proteins, luxR family DYQ48_10205 PF00072 Response regulator receiver domain DYQ48_10220 PF02561 Flagellar protein FliS DYQ48_10225 PF07196 Flagellin hook IN motif DYQ48_10225 PF07195 Flagellar hook-associated protein 2 C-terminus DYQ48_10225 PF02465 Flagellar hook-associated protein 2 N-terminus DYQ48_10230 PF00669 Bacterial flagellin N-terminal helical region DYQ48_10230 PF00700 Bacterial flagellin C-terminal helical region DYQ48_10240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ48_10240 PF07196 Flagellin hook IN motif DYQ48_10245 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DYQ48_10245 PF10135 Rod binding protein DYQ48_10250 PF02119 Flagellar P-ring protein DYQ48_10255 PF02107 Flagellar L-ring protein DYQ48_10260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ48_10260 PF00460 Flagella basal body rod protein DYQ48_10265 PF00460 Flagella basal body rod protein DYQ48_10265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ48_10270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ48_10270 PF00460 Flagella basal body rod protein DYQ48_10270 PF07559 Flagellar basal body protein FlaE DYQ48_10275 PF03963 Flagellar hook capping protein - N-terminal region DYQ48_10280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DYQ48_10280 PF00460 Flagella basal body rod protein DYQ48_10290 PF01584 CheW-like domain DYQ48_10290 PF00072 Response regulator receiver domain DYQ48_10310 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_10310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_10315 PF03707 Bacterial signalling protein N terminal repeat DYQ48_10315 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_10315 PF00563 EAL domain DYQ48_10320 PF07730 Histidine kinase DYQ48_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_10325 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_10325 PF00563 EAL domain DYQ48_10325 PF03707 Bacterial signalling protein N terminal repeat DYQ48_10345 PF00672 HAMP domain DYQ48_10345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_10345 PF12729 Four helix bundle sensory module for signal transduction DYQ48_10350 PF04356 Protein of unknown function (DUF489) DYQ48_10360 PF00293 NUDIX domain DYQ48_10365 PF02617 ATP-dependent Clp protease adaptor protein ClpS DYQ48_10370 PF17871 AAA lid domain DYQ48_10370 PF00004 ATPase family associated with various cellular activities (AAA) DYQ48_10370 PF07724 AAA domain (Cdc48 subfamily) DYQ48_10370 PF02861 Clp amino terminal domain, pathogenicity island component DYQ48_10370 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ48_10375 PF01176 Translation initiation factor 1A / IF-1 DYQ48_10380 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DYQ48_10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_10395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DYQ48_10395 PF01580 FtsK/SpoIIIE family DYQ48_10395 PF09397 Ftsk gamma domain DYQ48_10395 PF17854 FtsK alpha domain DYQ48_10405 PF03548 Outer membrane lipoprotein carrier protein LolA DYQ48_10410 PF00004 ATPase family associated with various cellular activities (AAA) DYQ48_10410 PF12002 MgsA AAA+ ATPase C terminal DYQ48_10410 PF16193 AAA C-terminal domain DYQ48_10415 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DYQ48_10420 PF00108 Thiolase, N-terminal domain DYQ48_10420 PF02803 Thiolase, C-terminal domain DYQ48_10425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYQ48_10425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYQ48_10425 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_10435 PF00334 Nucleoside diphosphate kinase DYQ48_10440 PF04055 Radical SAM superfamily DYQ48_10450 PF13464 Domain of unknown function (DUF4115) DYQ48_10460 PF01011 PQQ enzyme repeat DYQ48_10460 PF13360 PQQ-like domain DYQ48_10465 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYQ48_10465 PF01926 50S ribosome-binding GTPase DYQ48_10470 PF03454 MoeA C-terminal region (domain IV) DYQ48_10470 PF03453 MoeA N-terminal region (domain I and II) DYQ48_10470 PF00994 Probable molybdopterin binding domain DYQ48_10475 PF00899 ThiF family DYQ48_10485 PF03372 Endonuclease/Exonuclease/phosphatase family DYQ48_10495 PF03454 MoeA C-terminal region (domain IV) DYQ48_10495 PF03453 MoeA N-terminal region (domain I and II) DYQ48_10495 PF00994 Probable molybdopterin binding domain DYQ48_10500 PF12804 MobA-like NTP transferase domain DYQ48_10510 PF10414 Sirohaem synthase dimerisation region DYQ48_10510 PF14824 Sirohaem biosynthesis protein central DYQ48_10510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ48_10515 PF03861 ANTAR domain DYQ48_10515 PF00072 Response regulator receiver domain DYQ48_10530 PF07690 Major Facilitator Superfamily DYQ48_10535 PF04324 BFD-like [2Fe-2S] binding domain DYQ48_10535 PF18267 Rubredoxin NAD+ reductase C-terminal domain DYQ48_10535 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_10535 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYQ48_10535 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYQ48_10540 PF11723 Homotrimeric ring hydroxylase DYQ48_10540 PF00355 Rieske [2Fe-2S] domain DYQ48_10545 PF01568 Molydopterin dinucleotide binding domain DYQ48_10545 PF00384 Molybdopterin oxidoreductase DYQ48_10545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYQ48_10545 PF04324 BFD-like [2Fe-2S] binding domain DYQ48_10550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ48_10565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DYQ48_10575 PF00483 Nucleotidyl transferase DYQ48_10585 PF01266 FAD dependent oxidoreductase DYQ48_10600 PF05974 Domain of unknown function (DUF892) DYQ48_10615 PF08448 PAS fold DYQ48_10615 PF00563 EAL domain DYQ48_10615 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_10615 PF08447 PAS fold DYQ48_10620 PF12951 Passenger-associated-transport-repeat DYQ48_10625 PF00082 Subtilase family DYQ48_10625 PF03797 Autotransporter beta-domain DYQ48_10640 PF00486 Transcriptional regulatory protein, C terminal DYQ48_10640 PF00072 Response regulator receiver domain DYQ48_10650 PF01494 FAD binding domain DYQ48_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_10680 PF00072 Response regulator receiver domain DYQ48_10680 PF13426 PAS domain DYQ48_10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_10685 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_10685 PF00672 HAMP domain DYQ48_10705 PF07995 Glucose / Sorbosone dehydrogenase DYQ48_10715 PF01062 Bestrophin, RFP-TM, chloride channel DYQ48_10720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_10720 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_10725 PF00072 Response regulator receiver domain DYQ48_10725 PF00196 Bacterial regulatory proteins, luxR family DYQ48_10730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DYQ48_10755 PF00672 HAMP domain DYQ48_10755 PF02203 Tar ligand binding domain homologue DYQ48_10755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_10765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_10765 PF03466 LysR substrate binding domain DYQ48_10780 PF00106 short chain dehydrogenase DYQ48_10810 PF02646 RmuC family DYQ48_10840 PF01106 NifU-like domain DYQ48_10845 PF01329 Pterin 4 alpha carbinolamine dehydratase DYQ48_10915 PF01479 S4 domain DYQ48_10915 PF00849 RNA pseudouridylate synthase DYQ48_10920 PF10150 Ribonuclease E/G family DYQ48_10920 PF00575 S1 RNA binding domain DYQ48_10920 PF12111 Polyribonucleotide phosphorylase C terminal DYQ48_10925 PF00196 Bacterial regulatory proteins, luxR family DYQ48_10925 PF00072 Response regulator receiver domain DYQ48_10940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ48_10950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYQ48_10950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYQ48_10950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYQ48_10975 PF01066 CDP-alcohol phosphatidyltransferase DYQ48_10980 PF08459 UvrC Helix-hairpin-helix N-terminal DYQ48_10980 PF02151 UvrB/uvrC motif DYQ48_10980 PF01541 GIY-YIG catalytic domain DYQ48_10990 PF01451 Low molecular weight phosphotyrosine protein phosphatase DYQ48_10995 PF02348 Cytidylyltransferase DYQ48_11000 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DYQ48_11005 PF00664 ABC transporter transmembrane region DYQ48_11005 PF00005 ABC transporter DYQ48_11015 PF01618 MotA/TolQ/ExbB proton channel family DYQ48_11020 PF03772 Competence protein DYQ48_11020 PF00753 Metallo-beta-lactamase superfamily DYQ48_11030 PF00005 ABC transporter DYQ48_11035 PF02687 FtsX-like permease family DYQ48_11035 PF12704 MacB-like periplasmic core domain DYQ48_11045 PF03937 Flavinator of succinate dehydrogenase DYQ48_11050 PF13085 2Fe-2S iron-sulfur cluster binding domain DYQ48_11060 PF00890 FAD binding domain DYQ48_11060 PF02910 Fumarate reductase flavoprotein C-term DYQ48_11065 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DYQ48_11070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DYQ48_11080 PF01571 Aminomethyltransferase folate-binding domain DYQ48_11085 PF00005 ABC transporter DYQ48_11085 PF17912 MalK OB fold domain DYQ48_11090 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DYQ48_11090 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DYQ48_11095 PF02685 Glucokinase DYQ48_11100 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DYQ48_11105 PF00920 Dehydratase family DYQ48_11110 PF01081 KDPG and KHG aldolase DYQ48_11125 PF00873 AcrB/AcrD/AcrF family DYQ48_11130 PF00873 AcrB/AcrD/AcrF family DYQ48_11135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_11145 PF00034 Cytochrome c DYQ48_11185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ48_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_11185 PF00672 HAMP domain DYQ48_11185 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_11185 PF01627 Hpt domain DYQ48_11185 PF00072 Response regulator receiver domain DYQ48_11195 PF16921 Tex protein YqgF-like domain DYQ48_11195 PF09371 Tex-like protein N-terminal domain DYQ48_11195 PF00575 S1 RNA binding domain DYQ48_11195 PF17674 HHH domain DYQ48_11205 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DYQ48_11205 PF01266 FAD dependent oxidoreductase DYQ48_11220 PF00561 alpha/beta hydrolase fold DYQ48_11230 PF01066 CDP-alcohol phosphatidyltransferase DYQ48_11250 PF03618 Kinase/pyrophosphorylase DYQ48_11255 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ48_11255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DYQ48_11255 PF00391 PEP-utilising enzyme, mobile domain DYQ48_11260 PF00924 Mechanosensitive ion channel DYQ48_11260 PF05552 Conserved TM helix DYQ48_11265 PF00929 Exonuclease DYQ48_11270 PF14437 MafB19-like deaminase DYQ48_11275 PF01325 Iron dependent repressor, N-terminal DNA binding domain DYQ48_11275 PF02742 Iron dependent repressor, metal binding and dimerisation domain DYQ48_11280 PF01566 Natural resistance-associated macrophage protein DYQ48_11285 PF00561 alpha/beta hydrolase fold DYQ48_11330 PF13744 Helix-turn-helix domain DYQ48_11420 PF01850 PIN domain DYQ48_11430 PF17273 Family of unknown function (DUF5338) DYQ48_11510 PF13356 Arm DNA-binding domain DYQ48_11510 PF00589 Phage integrase family DYQ48_11520 PF02540 NAD synthase DYQ48_11520 PF00958 GMP synthase C terminal domain DYQ48_11520 PF00117 Glutamine amidotransferase class-I DYQ48_11525 PF00571 CBS domain DYQ48_11525 PF00478 IMP dehydrogenase / GMP reductase domain DYQ48_11530 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DYQ48_11530 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DYQ48_11540 PF00999 Sodium/hydrogen exchanger family DYQ48_11540 PF02254 TrkA-N domain DYQ48_11545 PF00483 Nucleotidyl transferase DYQ48_11550 PF02719 Polysaccharide biosynthesis protein DYQ48_11555 PF00953 Glycosyl transferase family 4 DYQ48_11560 PF18073 Rubredoxin metal binding domain DYQ48_11570 PF00216 Bacterial DNA-binding protein DYQ48_11575 PF00575 S1 RNA binding domain DYQ48_11580 PF02224 Cytidylate kinase DYQ48_11585 PF00444 Ribosomal protein L36 DYQ48_11595 PF04371 Porphyromonas-type peptidyl-arginine deiminase DYQ48_11600 PF00795 Carbon-nitrogen hydrolase DYQ48_11625 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_11630 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_11635 PF01547 Bacterial extracellular solute-binding protein DYQ48_11650 PF00356 Bacterial regulatory proteins, lacI family DYQ48_11660 PF03795 YCII-related domain DYQ48_11665 PF02616 Segregation and condensation protein ScpA DYQ48_11670 PF04079 Segregation and condensation complex subunit ScpB DYQ48_11675 PF00849 RNA pseudouridylate synthase DYQ48_11675 PF01479 S4 domain DYQ48_11695 PF00795 Carbon-nitrogen hydrolase DYQ48_11700 PF00155 Aminotransferase class I and II DYQ48_11705 PF00005 ABC transporter DYQ48_11710 PF03379 CcmB protein DYQ48_11715 PF01578 Cytochrome C assembly protein DYQ48_11725 PF03100 CcmE DYQ48_11730 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DYQ48_11730 PF01578 Cytochrome C assembly protein DYQ48_11735 PF08534 Redoxin DYQ48_11740 PF03918 Cytochrome C biogenesis protein DYQ48_11755 PF00561 alpha/beta hydrolase fold DYQ48_11765 PF00664 ABC transporter transmembrane region DYQ48_11765 PF00005 ABC transporter DYQ48_11770 PF00005 ABC transporter DYQ48_11770 PF00664 ABC transporter transmembrane region DYQ48_11775 PF01654 Cytochrome bd terminal oxidase subunit I DYQ48_11780 PF02322 Cytochrome bd terminal oxidase subunit II DYQ48_11800 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DYQ48_11800 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DYQ48_11810 PF00171 Aldehyde dehydrogenase family DYQ48_11815 PF00696 Amino acid kinase family DYQ48_11815 PF01472 PUA domain DYQ48_11830 PF00206 Lyase DYQ48_11835 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYQ48_11845 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase DYQ48_11845 PF00696 Amino acid kinase family DYQ48_11855 PF00764 Arginosuccinate synthase DYQ48_11860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYQ48_11860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYQ48_11875 PF01406 tRNA synthetases class I (C) catalytic domain DYQ48_11875 PF09190 DALR domain DYQ48_11880 PF02657 Fe-S metabolism associated domain DYQ48_11890 PF01258 Prokaryotic dksA/traR C4-type zinc finger DYQ48_11895 PF01809 Putative membrane protein insertion efficiency factor DYQ48_11900 PF01979 Amidohydrolase family DYQ48_11905 PF08460 Bacterial SH3 domain DYQ48_11905 PF01551 Peptidase family M23 DYQ48_11915 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DYQ48_11920 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DYQ48_11965 PF00295 Glycosyl hydrolases family 28 DYQ48_11980 PF13419 Haloacid dehalogenase-like hydrolase DYQ48_11990 PF01979 Amidohydrolase family DYQ48_12000 PF01132 Elongation factor P (EF-P) OB domain DYQ48_12000 PF08207 Elongation factor P (EF-P) KOW-like domain DYQ48_12000 PF09285 Elongation factor P, C-terminal DYQ48_12005 PF04055 Radical SAM superfamily DYQ48_12010 PF13188 PAS domain DYQ48_12010 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_12010 PF00563 EAL domain DYQ48_12010 PF03707 Bacterial signalling protein N terminal repeat DYQ48_12020 PF00588 SpoU rRNA Methylase family DYQ48_12025 PF00459 Inositol monophosphatase family DYQ48_12030 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DYQ48_12030 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DYQ48_12035 PF00545 ribonuclease DYQ48_12050 PF00308 Bacterial dnaA protein DYQ48_12055 PF01594 AI-2E family transporter DYQ48_12065 PF02769 AIR synthase related protein, C-terminal domain DYQ48_12065 PF00586 AIR synthase related protein, N-terminal domain DYQ48_12070 PF00551 Formyl transferase DYQ48_12100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYQ48_12105 PF01722 BolA-like protein DYQ48_12110 PF00571 CBS domain DYQ48_12110 PF01380 SIS domain DYQ48_12125 PF03968 OstA-like protein DYQ48_12130 PF00005 ABC transporter DYQ48_12135 PF04963 Sigma-54 factor, core binding domain DYQ48_12135 PF00309 Sigma-54 factor, Activator interacting domain (AID) DYQ48_12135 PF04552 Sigma-54, DNA binding domain DYQ48_12140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DYQ48_12145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYQ48_12150 PF07475 HPr Serine kinase C-terminal domain DYQ48_12150 PF02603 HPr Serine kinase N terminus DYQ48_12155 PF03668 P-loop ATPase protein family DYQ48_12165 PF00381 PTS HPr component phosphorylation site DYQ48_12170 PF00391 PEP-utilising enzyme, mobile domain DYQ48_12170 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ48_12170 PF05524 PEP-utilising enzyme, N-terminal DYQ48_12180 PF03448 MgtE intracellular N domain DYQ48_12180 PF00571 CBS domain DYQ48_12180 PF01769 Divalent cation transporter DYQ48_12185 PF00756 Putative esterase DYQ48_12190 PF02322 Cytochrome bd terminal oxidase subunit II DYQ48_12195 PF01654 Cytochrome bd terminal oxidase subunit I DYQ48_12205 PF00324 Amino acid permease DYQ48_12210 PF00544 Pectate lyase DYQ48_12215 PF00561 alpha/beta hydrolase fold DYQ48_12220 PF00196 Bacterial regulatory proteins, luxR family DYQ48_12225 PF00324 Amino acid permease DYQ48_12240 PF12706 Beta-lactamase superfamily domain DYQ48_12275 PF09278 MerR, DNA binding DYQ48_12275 PF00376 MerR family regulatory protein DYQ48_12280 PF07690 Major Facilitator Superfamily DYQ48_12285 PF03738 Glutathionylspermidine synthase preATP-grasp DYQ48_12310 PF04012 PspA/IM30 family DYQ48_12320 PF00583 Acetyltransferase (GNAT) family DYQ48_12325 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DYQ48_12325 PF01243 Pyridoxamine 5'-phosphate oxidase DYQ48_12330 PF01202 Shikimate kinase DYQ48_12335 PF01761 3-dehydroquinate synthase DYQ48_12345 PF01208 Uroporphyrinogen decarboxylase (URO-D) DYQ48_12355 PF00270 DEAD/DEAH box helicase DYQ48_12355 PF00271 Helicase conserved C-terminal domain DYQ48_12355 PF03880 DbpA RNA binding domain DYQ48_12360 PF00156 Phosphoribosyl transferase domain DYQ48_12365 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DYQ48_12375 PF14497 Glutathione S-transferase, C-terminal domain DYQ48_12375 PF02798 Glutathione S-transferase, N-terminal domain DYQ48_12380 PF00313 'Cold-shock' DNA-binding domain DYQ48_12385 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DYQ48_12390 PF07152 YaeQ protein DYQ48_12400 PF03707 Bacterial signalling protein N terminal repeat DYQ48_12400 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_12400 PF00563 EAL domain DYQ48_12410 PF01435 Peptidase family M48 DYQ48_12415 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYQ48_12420 PF00106 short chain dehydrogenase DYQ48_12425 PF07879 PHB/PHA accumulation regulator DNA-binding domain DYQ48_12425 PF05233 PHB accumulation regulatory domain DYQ48_12440 PF01119 DNA mismatch repair protein, C-terminal domain DYQ48_12440 PF08676 MutL C terminal dimerisation domain DYQ48_12445 PF01520 N-acetylmuramoyl-L-alanine amidase DYQ48_12445 PF11741 AMIN domain DYQ48_12455 PF03853 YjeF-related protein N-terminus DYQ48_12455 PF01256 Carbohydrate kinase DYQ48_12460 PF08331 Domain of unknown function (DUF1730) DYQ48_12465 PF02601 Exonuclease VII, large subunit DYQ48_12465 PF13742 OB-fold nucleic acid binding domain DYQ48_12475 PF03781 Sulfatase-modifying factor enzyme 1 DYQ48_12485 PF00570 HRDC domain DYQ48_12485 PF01612 3'-5' exonuclease DYQ48_12505 PF01584 CheW-like domain DYQ48_12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYQ48_12510 PF00672 HAMP domain DYQ48_12510 PF02743 Cache domain DYQ48_12520 PF00270 DEAD/DEAH box helicase DYQ48_12520 PF08494 DEAD/H associated DYQ48_12520 PF00271 Helicase conserved C-terminal domain DYQ48_12530 PF04386 Stringent starvation protein B DYQ48_12535 PF02798 Glutathione S-transferase, N-terminal domain DYQ48_12535 PF00043 Glutathione S-transferase, C-terminal domain DYQ48_12545 PF02167 Cytochrome C1 family DYQ48_12550 PF00033 Cytochrome b/b6/petB DYQ48_12550 PF00032 Cytochrome b(C-terminal)/b6/petD DYQ48_12555 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DYQ48_12555 PF00355 Rieske [2Fe-2S] domain DYQ48_12560 PF01464 Transglycosylase SLT domain DYQ48_12575 PF00919 Uncharacterized protein family UPF0004 DYQ48_12575 PF04055 Radical SAM superfamily DYQ48_12575 PF01938 TRAM domain DYQ48_12580 PF02562 PhoH-like protein DYQ48_12590 PF02130 Uncharacterized protein family UPF0054 DYQ48_12600 PF00571 CBS domain DYQ48_12600 PF03471 Transporter associated domain DYQ48_12620 PF00171 Aldehyde dehydrogenase family DYQ48_12630 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_12635 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_12645 PF00005 ABC transporter DYQ48_12645 PF08402 TOBE domain DYQ48_12650 PF02321 Outer membrane efflux protein DYQ48_12655 PF07690 Major Facilitator Superfamily DYQ48_12660 PF13533 Biotin-lipoyl like DYQ48_12665 PF13416 Bacterial extracellular solute-binding protein DYQ48_12670 PF00202 Aminotransferase class-III DYQ48_12675 PF00120 Glutamine synthetase, catalytic domain DYQ48_12680 PF07722 Peptidase C26 DYQ48_12685 PF00120 Glutamine synthetase, catalytic domain DYQ48_12690 PF01266 FAD dependent oxidoreductase DYQ48_12700 PF00072 Response regulator receiver domain DYQ48_12700 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_12725 PF00384 Molybdopterin oxidoreductase DYQ48_12730 PF02634 FdhD/NarQ family DYQ48_12735 PF07690 Major Facilitator Superfamily DYQ48_12740 PF00202 Aminotransferase class-III DYQ48_12750 PF04286 Protein of unknown function (DUF445) DYQ48_12755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_12755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ48_12755 PF00072 Response regulator receiver domain DYQ48_12755 PF01627 Hpt domain DYQ48_12755 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_12755 PF00672 HAMP domain DYQ48_12760 PF00072 Response regulator receiver domain DYQ48_12765 PF07690 Major Facilitator Superfamily DYQ48_12775 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_12775 PF00107 Zinc-binding dehydrogenase DYQ48_12780 PF00106 short chain dehydrogenase DYQ48_12785 PF00440 Bacterial regulatory proteins, tetR family DYQ48_12790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ48_12795 PF00106 short chain dehydrogenase DYQ48_12800 PF00107 Zinc-binding dehydrogenase DYQ48_12800 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_12835 PF05088 Bacterial NAD-glutamate dehydrogenase DYQ48_12845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_12845 PF00529 HlyD membrane-fusion protein of T1SS DYQ48_12850 PF00873 AcrB/AcrD/AcrF family DYQ48_12855 PF00356 Bacterial regulatory proteins, lacI family DYQ48_12860 PF02896 PEP-utilising enzyme, TIM barrel domain DYQ48_12860 PF00391 PEP-utilising enzyme, mobile domain DYQ48_12860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYQ48_12860 PF05524 PEP-utilising enzyme, N-terminal DYQ48_12860 PF00381 PTS HPr component phosphorylation site DYQ48_12865 PF00294 pfkB family carbohydrate kinase DYQ48_12870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DYQ48_12935 PF02355 Protein export membrane protein DYQ48_12935 PF07549 SecD/SecF GG Motif DYQ48_12940 PF13721 SecD export protein N-terminal TM region DYQ48_12940 PF02355 Protein export membrane protein DYQ48_12940 PF07549 SecD/SecF GG Motif DYQ48_12945 PF02699 Preprotein translocase subunit DYQ48_12950 PF01702 Queuine tRNA-ribosyltransferase DYQ48_12955 PF02547 Queuosine biosynthesis protein DYQ48_13000 PF02927 Cellulase N-terminal ig-like domain DYQ48_13000 PF00759 Glycosyl hydrolase family 9 DYQ48_13015 PF00037 4Fe-4S binding domain DYQ48_13030 PF01467 Cytidylyltransferase-like DYQ48_13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_13040 PF00183 Hsp90 protein DYQ48_13085 PF00593 TonB dependent receptor DYQ48_13085 PF07715 TonB-dependent Receptor Plug Domain DYQ48_13100 PF07532 Bacterial Ig-like domain (group 4) DYQ48_13105 PF07532 Bacterial Ig-like domain (group 4) DYQ48_13120 PF09286 Pro-kumamolisin, activation domain DYQ48_13120 PF00082 Subtilase family DYQ48_13155 PF13520 Amino acid permease DYQ48_13170 PF01321 Creatinase/Prolidase N-terminal domain DYQ48_13170 PF00557 Metallopeptidase family M24 DYQ48_13175 PF00171 Aldehyde dehydrogenase family DYQ48_13180 PF00701 Dihydrodipicolinate synthetase family DYQ48_13185 PF04324 BFD-like [2Fe-2S] binding domain DYQ48_13185 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_13195 PF01266 FAD dependent oxidoreductase DYQ48_13200 PF05544 Proline racemase DYQ48_13210 PF00448 SRP54-type protein, GTPase domain DYQ48_13210 PF02881 SRP54-type protein, helical bundle domain DYQ48_13215 PF14815 NUDIX domain DYQ48_13215 PF00633 Helix-hairpin-helix motif DYQ48_13215 PF10576 Iron-sulfur binding domain of endonuclease III DYQ48_13215 PF00730 HhH-GPD superfamily base excision DNA repair protein DYQ48_13220 PF04362 Bacterial Fe(2+) trafficking DYQ48_13240 PF00893 Small Multidrug Resistance protein DYQ48_13265 PF08212 Lipocalin-like domain DYQ48_13275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_13275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_13275 PF02770 Acyl-CoA dehydrogenase, middle domain DYQ48_13275 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYQ48_13285 PF02780 Transketolase, C-terminal domain DYQ48_13285 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYQ48_13285 PF02779 Transketolase, pyrimidine binding domain DYQ48_13305 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DYQ48_13310 PF16123 Hydroxyacylglutathione hydrolase C-terminus DYQ48_13310 PF00753 Metallo-beta-lactamase superfamily DYQ48_13315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYQ48_13315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ48_13330 PF03808 Glycosyl transferase WecB/TagA/CpsF family DYQ48_13345 PF14667 Polysaccharide biosynthesis C-terminal domain DYQ48_13355 PF00534 Glycosyl transferases group 1 DYQ48_13355 PF13439 Glycosyltransferase Family 4 DYQ48_13375 PF02397 Bacterial sugar transferase DYQ48_13395 PF13411 MerR HTH family regulatory protein DYQ48_13400 PF00216 Bacterial DNA-binding protein DYQ48_13405 PF03147 Ferredoxin-fold anticodon binding domain DYQ48_13405 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DYQ48_13405 PF03483 B3/4 domain DYQ48_13405 PF03484 tRNA synthetase B5 domain DYQ48_13405 PF01588 Putative tRNA binding domain DYQ48_13410 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DYQ48_13410 PF01409 tRNA synthetases class II core domain (F) DYQ48_13415 PF00453 Ribosomal protein L20 DYQ48_13420 PF01632 Ribosomal protein L35 DYQ48_13425 PF05198 Translation initiation factor IF-3, N-terminal domain DYQ48_13425 PF00707 Translation initiation factor IF-3, C-terminal domain DYQ48_13430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ48_13430 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYQ48_13430 PF03129 Anticodon binding domain DYQ48_13430 PF02824 TGS domain DYQ48_13490 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DYQ48_13495 PF05101 Type IV secretory pathway, VirB3-like protein DYQ48_13505 PF01464 Transglycosylase SLT domain DYQ48_13510 PF00437 Type II/IV secretion system protein DYQ48_13515 PF03743 Bacterial conjugation TrbI-like protein DYQ48_13535 PF02534 Type IV secretory system Conjugative DNA transfer DYQ48_13550 PF02151 UvrB/uvrC motif DYQ48_13550 PF00271 Helicase conserved C-terminal domain DYQ48_13550 PF12344 Ultra-violet resistance protein B DYQ48_13550 PF17757 UvrB interaction domain DYQ48_13550 PF04851 Type III restriction enzyme, res subunit DYQ48_13555 PF07963 Prokaryotic N-terminal methylation motif DYQ48_13555 PF00114 Pilin (bacterial filament) DYQ48_13570 PF05567 Neisseria PilC beta-propeller domain DYQ48_13595 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DYQ48_13595 PF11892 Domain of unknown function (DUF3412) DYQ48_13595 PF03641 Possible lysine decarboxylase DYQ48_13600 PF00593 TonB dependent receptor DYQ48_13600 PF00593 TonB dependent receptor DYQ48_13605 PF01914 MarC family integral membrane protein DYQ48_13615 PF00462 Glutaredoxin DYQ48_13620 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DYQ48_13620 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DYQ48_13625 PF02222 ATP-grasp domain DYQ48_13625 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DYQ48_13630 PF00731 AIR carboxylase DYQ48_13640 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DYQ48_13640 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DYQ48_13655 PF03725 3' exoribonuclease family, domain 2 DYQ48_13655 PF00013 KH domain DYQ48_13655 PF00575 S1 RNA binding domain DYQ48_13655 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DYQ48_13655 PF01138 3' exoribonuclease family, domain 1 DYQ48_13660 PF00312 Ribosomal protein S15 DYQ48_13665 PF09157 Pseudouridine synthase II TruB, C-terminal DYQ48_13665 PF16198 tRNA pseudouridylate synthase B C-terminal domain DYQ48_13665 PF01509 TruB family pseudouridylate synthase (N terminal domain) DYQ48_13670 PF02033 Ribosome-binding factor A DYQ48_13675 PF04760 Translation initiation factor IF-2, N-terminal region DYQ48_13675 PF08364 Bacterial translation initiation factor IF-2 associated region DYQ48_13675 PF11987 Translation-initiation factor 2 DYQ48_13675 PF00009 Elongation factor Tu GTP binding domain DYQ48_13680 PF00575 S1 RNA binding domain DYQ48_13680 PF13184 NusA-like KH domain DYQ48_13680 PF08529 NusA N-terminal domain DYQ48_13685 PF02576 RimP N-terminal domain DYQ48_13685 PF17384 RimP C-terminal SH3 domain DYQ48_13695 PF00361 Proton-conducting membrane transporter DYQ48_13700 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DYQ48_13700 PF00361 Proton-conducting membrane transporter DYQ48_13705 PF00361 Proton-conducting membrane transporter DYQ48_13705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DYQ48_13710 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DYQ48_13715 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DYQ48_13720 PF12838 4Fe-4S dicluster domain DYQ48_13725 PF00146 NADH dehydrogenase DYQ48_13730 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DYQ48_13730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYQ48_13730 PF00384 Molybdopterin oxidoreductase DYQ48_13735 PF10531 SLBB domain DYQ48_13735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DYQ48_13735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYQ48_13745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DYQ48_13750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DYQ48_13755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DYQ48_13760 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DYQ48_13775 PF00121 Triosephosphate isomerase DYQ48_13780 PF00106 short chain dehydrogenase DYQ48_13805 PF00563 EAL domain DYQ48_13805 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_13805 PF03707 Bacterial signalling protein N terminal repeat DYQ48_13820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ48_13820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ48_13820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ48_13820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ48_13825 PF01039 Carboxyl transferase domain DYQ48_13825 PF17848 Acetyl-coA carboxylase zinc finger domain DYQ48_13830 PF00290 Tryptophan synthase alpha chain DYQ48_13840 PF00291 Pyridoxal-phosphate dependent enzyme DYQ48_13845 PF03466 LysR substrate binding domain DYQ48_13845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_13850 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DYQ48_13855 PF01416 tRNA pseudouridine synthase DYQ48_13870 PF02774 Semialdehyde dehydrogenase, dimerisation domain DYQ48_13870 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYQ48_13875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYQ48_13875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYQ48_13880 PF01264 Chorismate synthase DYQ48_13890 PF05175 Methyltransferase small domain DYQ48_13895 PF02630 SCO1/SenC DYQ48_13900 PF02666 Phosphatidylserine decarboxylase DYQ48_13910 PF05872 Bacterial protein of unknown function (DUF853) DYQ48_13940 PF12802 MarR family DYQ48_13975 PF01272 Transcription elongation factor, GreA/GreB, C-term DYQ48_13975 PF03449 Transcription elongation factor, N-terminal DYQ48_13980 PF00919 Uncharacterized protein family UPF0004 DYQ48_13980 PF18693 TRAM domain DYQ48_13980 PF04055 Radical SAM superfamily DYQ48_13985 PF01738 Dienelactone hydrolase family DYQ48_14005 PF00692 dUTPase DYQ48_14015 PF10609 NUBPL iron-transfer P-loop NTPase DYQ48_14020 PF07715 TonB-dependent Receptor Plug Domain DYQ48_14020 PF00593 TonB dependent receptor DYQ48_14040 PF05649 Peptidase family M13 DYQ48_14040 PF01431 Peptidase family M13 DYQ48_14065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ48_14065 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_14070 PF04235 Protein of unknown function (DUF418) DYQ48_14075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ48_14080 PF00877 NlpC/P60 family DYQ48_14085 PF00877 NlpC/P60 family DYQ48_14095 PF13649 Methyltransferase domain DYQ48_14100 PF00375 Sodium:dicarboxylate symporter family DYQ48_14105 PF00245 Alkaline phosphatase DYQ48_14110 PF09179 TilS substrate binding domain DYQ48_14110 PF11734 TilS substrate C-terminal domain DYQ48_14110 PF01171 PP-loop family DYQ48_14115 PF02609 Exonuclease VII small subunit DYQ48_14120 PF00348 Polyprenyl synthetase DYQ48_14125 PF14521 Lysine-specific metallo-endopeptidase DYQ48_14135 PF01523 Putative modulator of DNA gyrase DYQ48_14140 PF04751 Protein of unknown function (DUF615) DYQ48_14145 PF01523 Putative modulator of DNA gyrase DYQ48_14155 PF13502 AsmA-like C-terminal region DYQ48_14155 PF13116 Protein of unknown function DYQ48_14160 PF10150 Ribonuclease E/G family DYQ48_14160 PF00575 S1 RNA binding domain DYQ48_14165 PF02545 Maf-like protein DYQ48_14180 PF02590 Predicted SPOUT methyltransferase DYQ48_14200 PF01467 Cytidylyltransferase-like DYQ48_14215 PF00133 tRNA synthetases class I (I, L, M and V) DYQ48_14215 PF13603 Leucyl-tRNA synthetase, Domain 2 DYQ48_14215 PF08264 Anticodon-binding domain of tRNA DYQ48_14225 PF00085 Thioredoxin DYQ48_14235 PF05736 OprF membrane domain DYQ48_14235 PF00691 OmpA family DYQ48_14240 PF00875 DNA photolyase DYQ48_14240 PF03441 FAD binding domain of DNA photolyase DYQ48_14250 PF03796 DnaB-like helicase C terminal domain DYQ48_14250 PF00772 DnaB-like helicase N terminal domain DYQ48_14255 PF03358 NADPH-dependent FMN reductase DYQ48_14260 PF13537 Glutamine amidotransferase domain DYQ48_14260 PF00733 Asparagine synthase DYQ48_14265 PF00043 Glutathione S-transferase, C-terminal domain DYQ48_14265 PF02798 Glutathione S-transferase, N-terminal domain DYQ48_14275 PF02770 Acyl-CoA dehydrogenase, middle domain DYQ48_14275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_14275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_14290 PF01026 TatD related DNase DYQ48_14295 PF00899 ThiF family DYQ48_14310 PF00313 'Cold-shock' DNA-binding domain DYQ48_14320 PF02253 Phospholipase A1 DYQ48_14330 PF00484 Carbonic anhydrase DYQ48_14345 PF05683 Fumarase C-terminus DYQ48_14345 PF05681 Fumarate hydratase (Fumerase) DYQ48_14350 PF00005 ABC transporter DYQ48_14355 PF00970 Oxidoreductase FAD-binding domain DYQ48_14355 PF00175 Oxidoreductase NAD-binding domain DYQ48_14360 PF00255 Glutathione peroxidase DYQ48_14365 PF01432 Peptidase family M3 DYQ48_14370 PF12802 MarR family DYQ48_14395 PF00854 POT family DYQ48_14405 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_14405 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ48_14405 PF14310 Fibronectin type III-like domain DYQ48_14420 PF07690 Major Facilitator Superfamily DYQ48_14425 PF00529 HlyD membrane-fusion protein of T1SS DYQ48_14425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_14430 PF02321 Outer membrane efflux protein DYQ48_14445 PF00521 DNA gyrase/topoisomerase IV, subunit A DYQ48_14445 PF03989 DNA gyrase C-terminal domain, beta-propeller DYQ48_14450 PF05724 Thiopurine S-methyltransferase (TPMT) DYQ48_14455 PF00210 Ferritin-like domain DYQ48_14460 PF01804 Penicillin amidase DYQ48_14465 PF07715 TonB-dependent Receptor Plug Domain DYQ48_14465 PF00593 TonB dependent receptor DYQ48_14475 PF00733 Asparagine synthase DYQ48_14475 PF13537 Glutamine amidotransferase domain DYQ48_14480 PF01546 Peptidase family M20/M25/M40 DYQ48_14480 PF07687 Peptidase dimerisation domain DYQ48_14485 PF03960 ArsC family DYQ48_14495 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DYQ48_14495 PF14602 Hexapeptide repeat of succinyl-transferase DYQ48_14495 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ48_14500 PF01909 Nucleotidyltransferase domain DYQ48_14500 PF01966 HD domain DYQ48_14500 PF08335 GlnD PII-uridylyltransferase DYQ48_14505 PF00557 Metallopeptidase family M24 DYQ48_14545 PF00318 Ribosomal protein S2 DYQ48_14550 PF00889 Elongation factor TS DYQ48_14555 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_14555 PF00072 Response regulator receiver domain DYQ48_14560 PF00696 Amino acid kinase family DYQ48_14565 PF01765 Ribosome recycling factor DYQ48_14570 PF01255 Putative undecaprenyl diphosphate synthase DYQ48_14580 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYQ48_14580 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYQ48_14580 PF13288 DXP reductoisomerase C-terminal domain DYQ48_14585 PF17820 PDZ domain DYQ48_14585 PF02163 Peptidase family M50 DYQ48_14590 PF07244 Surface antigen variable number repeat DYQ48_14590 PF01103 Surface antigen DYQ48_14600 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ48_14600 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DYQ48_14605 PF07977 FabA-like domain DYQ48_14610 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DYQ48_14610 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ48_14615 PF02684 Lipid-A-disaccharide synthetase DYQ48_14620 PF01351 Ribonuclease HII DYQ48_14625 PF02811 PHP domain DYQ48_14625 PF14579 Helix-hairpin-helix motif DYQ48_14625 PF01336 OB-fold nucleic acid binding domain DYQ48_14625 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYQ48_14625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYQ48_14630 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DYQ48_14670 PF03551 Transcriptional regulator PadR-like family DYQ48_14695 PF02592 Putative vitamin uptake transporter DYQ48_14700 PF01810 LysE type translocator DYQ48_14715 PF02574 Homocysteine S-methyltransferase DYQ48_14720 PF00324 Amino acid permease DYQ48_14725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYQ48_14730 PF00005 ABC transporter DYQ48_14730 PF13732 Domain of unknown function (DUF4162) DYQ48_14745 PF09334 tRNA synthetases class I (M) DYQ48_14745 PF01588 Putative tRNA binding domain DYQ48_14755 PF04060 Putative Fe-S cluster DYQ48_14770 PF04542 Sigma-70 region 2 DYQ48_14770 PF04545 Sigma-70, region 4 DYQ48_14815 PF01042 Endoribonuclease L-PSP DYQ48_14825 PF09924 Uncharacterised conserved protein (DUF2156) DYQ48_14825 PF03706 Lysylphosphatidylglycerol synthase TM region DYQ48_14860 PF07690 Major Facilitator Superfamily DYQ48_14865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ48_14880 PF08274 PhnA Zinc-Ribbon DYQ48_14880 PF03831 PhnA domain DYQ48_14890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYQ48_14915 PF04542 Sigma-70 region 2 DYQ48_14915 PF08281 Sigma-70, region 4 DYQ48_14930 PF01258 Prokaryotic dksA/traR C4-type zinc finger DYQ48_14940 PF07043 Protein of unknown function (DUF1328) DYQ48_14945 PF01863 Protein of unknown function DUF45 DYQ48_14955 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYQ48_14955 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYQ48_14960 PF12951 Passenger-associated-transport-repeat DYQ48_14960 PF03797 Autotransporter beta-domain DYQ48_14960 PF00082 Subtilase family DYQ48_14965 PF00108 Thiolase, N-terminal domain DYQ48_14965 PF02803 Thiolase, C-terminal domain DYQ48_14980 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_14980 PF00072 Response regulator receiver domain DYQ48_14995 PF01068 ATP dependent DNA ligase domain DYQ48_14995 PF04679 ATP dependent DNA ligase C terminal region DYQ48_14995 PF04675 DNA ligase N terminus DYQ48_15005 PF04675 DNA ligase N terminus DYQ48_15005 PF01068 ATP dependent DNA ligase domain DYQ48_15005 PF04679 ATP dependent DNA ligase C terminal region DYQ48_15010 PF00271 Helicase conserved C-terminal domain DYQ48_15010 PF08494 DEAD/H associated DYQ48_15010 PF00270 DEAD/DEAH box helicase DYQ48_15025 PF00313 'Cold-shock' DNA-binding domain DYQ48_15030 PF01048 Phosphorylase superfamily DYQ48_15040 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_15045 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DYQ48_15050 PF01593 Flavin containing amine oxidoreductase DYQ48_15055 PF01323 DSBA-like thioredoxin domain DYQ48_15075 PF05958 tRNA (Uracil-5-)-methyltransferase DYQ48_15080 PF00486 Transcriptional regulatory protein, C terminal DYQ48_15080 PF00072 Response regulator receiver domain DYQ48_15085 PF11967 Recombination protein O N terminal DYQ48_15085 PF02565 Recombination protein O C terminal DYQ48_15090 PF01926 50S ribosome-binding GTPase DYQ48_15090 PF07650 KH domain DYQ48_15095 PF00035 Double-stranded RNA binding motif DYQ48_15095 PF14622 Ribonuclease-III-like DYQ48_15105 PF10502 Signal peptidase, peptidase S26 DYQ48_15110 PF00679 Elongation factor G C-terminus DYQ48_15110 PF00009 Elongation factor Tu GTP binding domain DYQ48_15110 PF03144 Elongation factor Tu domain 2 DYQ48_15110 PF06421 GTP-binding protein LepA C-terminus DYQ48_15115 PF13180 PDZ domain DYQ48_15125 PF04542 Sigma-70 region 2 DYQ48_15125 PF08281 Sigma-70, region 4 DYQ48_15130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYQ48_15130 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_15130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYQ48_15135 PF07715 TonB-dependent Receptor Plug Domain DYQ48_15135 PF00593 TonB dependent receptor DYQ48_15140 PF13181 Tetratricopeptide repeat DYQ48_15160 PF01545 Cation efflux family DYQ48_15170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYQ48_15170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYQ48_15175 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYQ48_15175 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYQ48_15175 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_15180 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_15185 PF02770 Acyl-CoA dehydrogenase, middle domain DYQ48_15185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_15185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_15190 PF00171 Aldehyde dehydrogenase family DYQ48_15195 PF06114 IrrE N-terminal-like domain DYQ48_15195 PF01381 Helix-turn-helix DYQ48_15195 PF09856 Predicted transcriptional regulator (DUF2083) DYQ48_15205 PF07745 Glycosyl hydrolase family 53 DYQ48_15210 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYQ48_15210 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DYQ48_15210 PF00703 Glycosyl hydrolases family 2 DYQ48_15210 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DYQ48_15210 PF16355 Domain of unknown function (DUF4982) DYQ48_15215 PF13378 Enolase C-terminal domain-like DYQ48_15220 PF00375 Sodium:dicarboxylate symporter family DYQ48_15225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_15225 PF03466 LysR substrate binding domain DYQ48_15235 PF00106 short chain dehydrogenase DYQ48_15250 PF00440 Bacterial regulatory proteins, tetR family DYQ48_15250 PF17754 MftR C-terminal domain DYQ48_15280 PF05192 MutS domain III DYQ48_15280 PF05188 MutS domain II DYQ48_15280 PF01624 MutS domain I DYQ48_15280 PF05190 MutS family domain IV DYQ48_15280 PF00488 MutS domain V DYQ48_15290 PF00141 Peroxidase DYQ48_15300 PF01479 S4 domain DYQ48_15305 PF01554 MatE DYQ48_15310 PF01245 Ribosomal protein L19 DYQ48_15315 PF01746 tRNA (Guanine-1)-methyltransferase DYQ48_15320 PF05239 PRC-barrel domain DYQ48_15320 PF01782 RimM N-terminal domain DYQ48_15325 PF00886 Ribosomal protein S16 DYQ48_15335 PF03060 Nitronate monooxygenase DYQ48_15340 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) DYQ48_15345 PF02881 SRP54-type protein, helical bundle domain DYQ48_15345 PF00448 SRP54-type protein, GTPase domain DYQ48_15345 PF02978 Signal peptide binding domain DYQ48_15350 PF01578 Cytochrome C assembly protein DYQ48_15355 PF01263 Aldose 1-epimerase DYQ48_15390 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DYQ48_15395 PF03466 LysR substrate binding domain DYQ48_15395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_15410 PF00072 Response regulator receiver domain DYQ48_15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15415 PF00072 Response regulator receiver domain DYQ48_15415 PF13426 PAS domain DYQ48_15420 PF01627 Hpt domain DYQ48_15420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ48_15420 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15420 PF00672 HAMP domain DYQ48_15420 PF00072 Response regulator receiver domain DYQ48_15425 PF03705 CheR methyltransferase, all-alpha domain DYQ48_15425 PF01739 CheR methyltransferase, SAM binding domain DYQ48_15430 PF00072 Response regulator receiver domain DYQ48_15430 PF01339 CheB methylesterase DYQ48_15435 PF13493 Domain of unknown function (DUF4118) DYQ48_15435 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_15435 PF02702 Osmosensitive K+ channel His kinase sensor domain DYQ48_15435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15435 PF13492 GAF domain DYQ48_15440 PF07237 Protein of unknown function (DUF1428) DYQ48_15445 PF00085 Thioredoxin DYQ48_15450 PF00593 TonB dependent receptor DYQ48_15450 PF07715 TonB-dependent Receptor Plug Domain DYQ48_15460 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_15460 PF13188 PAS domain DYQ48_15460 PF08448 PAS fold DYQ48_15460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15460 PF00072 Response regulator receiver domain DYQ48_15465 PF01627 Hpt domain DYQ48_15465 PF00072 Response regulator receiver domain DYQ48_15465 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_15465 PF00672 HAMP domain DYQ48_15465 PF17149 Periplasmic sensor domain found in signal transduction proteins DYQ48_15465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15475 PF13581 Histidine kinase-like ATPase domain DYQ48_15480 PF01740 STAS domain DYQ48_15485 PF01740 STAS domain DYQ48_15485 PF08678 Rsbr N terminal DYQ48_15490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ48_15505 PF00183 Hsp90 protein DYQ48_15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15510 PF12833 Helix-turn-helix domain DYQ48_15520 PF05656 Protein of unknown function (DUF805) DYQ48_15525 PF18073 Rubredoxin metal binding domain DYQ48_15535 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DYQ48_15540 PF00510 Cytochrome c oxidase subunit III DYQ48_15545 PF00115 Cytochrome C and Quinol oxidase polypeptide I DYQ48_15550 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DYQ48_15550 PF06481 COX Aromatic Rich Motif DYQ48_15560 PF02401 LytB protein DYQ48_15565 PF01252 Signal peptidase (SPase) II DYQ48_15570 PF00133 tRNA synthetases class I (I, L, M and V) DYQ48_15570 PF06827 Zinc finger found in FPG and IleRS DYQ48_15570 PF08264 Anticodon-binding domain of tRNA DYQ48_15575 PF01687 Riboflavin kinase DYQ48_15575 PF06574 FAD synthetase DYQ48_15580 PF03023 Lipid II flippase MurJ DYQ48_15585 PF01649 Ribosomal protein S20 DYQ48_15590 PF01926 50S ribosome-binding GTPase DYQ48_15590 PF01018 GTP1/OBG DYQ48_15595 PF01016 Ribosomal L27 protein DYQ48_15600 PF00829 Ribosomal prokaryotic L21 protein DYQ48_15605 PF17760 UvrA interaction domain DYQ48_15605 PF17755 UvrA DNA-binding domain DYQ48_15605 PF00005 ABC transporter DYQ48_15620 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_15635 PF08281 Sigma-70, region 4 DYQ48_15635 PF04542 Sigma-70 region 2 DYQ48_15655 PF04376 Arginine-tRNA-protein transferase, N terminus DYQ48_15655 PF04377 Arginine-tRNA-protein transferase, C terminus DYQ48_15675 PF01370 NAD dependent epimerase/dehydratase family DYQ48_15675 PF02222 ATP-grasp domain DYQ48_15705 PF00730 HhH-GPD superfamily base excision DNA repair protein DYQ48_15720 PF00196 Bacterial regulatory proteins, luxR family DYQ48_15720 PF00072 Response regulator receiver domain DYQ48_15725 PF07730 Histidine kinase DYQ48_15740 PF03775 Septum formation inhibitor MinC, C-terminal domain DYQ48_15740 PF05209 Septum formation inhibitor MinC, N-terminal domain DYQ48_15745 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DYQ48_15750 PF03776 Septum formation topological specificity factor MinE DYQ48_15760 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_15765 PF00072 Response regulator receiver domain DYQ48_15765 PF00486 Transcriptional regulatory protein, C terminal DYQ48_15780 PF08019 Phosphoethanolamine transferase EptA/EptB DYQ48_15780 PF00884 Sulfatase DYQ48_15805 PF07690 Major Facilitator Superfamily DYQ48_15810 PF02347 Glycine cleavage system P-protein DYQ48_15820 PF00135 Carboxylesterase family DYQ48_15825 PF00248 Aldo/keto reductase family DYQ48_15835 PF06628 Catalase-related immune-responsive DYQ48_15835 PF18011 C-terminal domain found in long catalases DYQ48_15835 PF00199 Catalase DYQ48_15845 PF02311 AraC-like ligand binding domain DYQ48_15845 PF12833 Helix-turn-helix domain DYQ48_15855 PF07676 WD40-like Beta Propeller Repeat DYQ48_15855 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DYQ48_15855 PF00326 Prolyl oligopeptidase family DYQ48_15865 PF03169 OPT oligopeptide transporter protein DYQ48_15880 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYQ48_15880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYQ48_15880 PF14579 Helix-hairpin-helix motif DYQ48_15880 PF02811 PHP domain DYQ48_15895 PF00717 Peptidase S24-like DYQ48_15895 PF01726 LexA DNA binding domain DYQ48_15915 PF00328 Histidine phosphatase superfamily (branch 2) DYQ48_15930 PF08281 Sigma-70, region 4 DYQ48_15930 PF04542 Sigma-70 region 2 DYQ48_15935 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ48_15935 PF10518 TAT (twin-arginine translocation) pathway signal sequence DYQ48_15935 PF01799 [2Fe-2S] binding domain DYQ48_15940 PF03450 CO dehydrogenase flavoprotein C-terminal domain DYQ48_15940 PF00941 FAD binding domain in molybdopterin dehydrogenase DYQ48_15945 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DYQ48_15945 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DYQ48_15950 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_15950 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ48_15950 PF14310 Fibronectin type III-like domain DYQ48_15960 PF17755 UvrA DNA-binding domain DYQ48_15985 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_15995 PF17678 Glycosyl hydrolase family 92 N-terminal domain DYQ48_15995 PF07971 Glycosyl hydrolase family 92 DYQ48_16020 PF01256 Carbohydrate kinase DYQ48_16025 PF13456 Reverse transcriptase-like DYQ48_16025 PF00300 Histidine phosphatase superfamily (branch 1) DYQ48_16095 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DYQ48_16095 PF12008 Type I restriction and modification enzyme - subunit R C terminal DYQ48_16095 PF18766 SWI2/SNF2 ATPase DYQ48_16110 PF02384 N-6 DNA Methylase DYQ48_16110 PF12161 HsdM N-terminal domain DYQ48_16140 PF00709 Adenylosuccinate synthetase DYQ48_16160 PF01145 SPFH domain / Band 7 family DYQ48_16165 PF12221 Bacterial membrane protein N terminal DYQ48_16165 PF01145 SPFH domain / Band 7 family DYQ48_16170 PF00072 Response regulator receiver domain DYQ48_16175 PF00226 DnaJ domain DYQ48_16175 PF01556 DnaJ C terminal domain DYQ48_16185 PF08534 Redoxin DYQ48_16195 PF00912 Transglycosylase DYQ48_16195 PF06832 Penicillin-Binding Protein C-terminus Family DYQ48_16195 PF00905 Penicillin binding protein transpeptidase domain DYQ48_16215 PF17962 Bacterial macroglobulin domain 6 DYQ48_16215 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DYQ48_16215 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DYQ48_16215 PF00207 Alpha-2-macroglobulin family DYQ48_16215 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DYQ48_16215 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DYQ48_16215 PF07703 Alpha-2-macroglobulin bait region domain DYQ48_16215 PF01835 MG2 domain DYQ48_16225 PF00593 TonB dependent receptor DYQ48_16225 PF07715 TonB-dependent Receptor Plug Domain DYQ48_16230 PF04303 PrpF protein DYQ48_16235 PF00330 Aconitase family (aconitate hydratase) DYQ48_16235 PF00694 Aconitase C-terminal domain DYQ48_16240 PF00285 Citrate synthase, C-terminal domain DYQ48_16250 PF06506 Propionate catabolism activator DYQ48_16250 PF02954 Bacterial regulatory protein, Fis family DYQ48_16250 PF00158 Sigma-54 interaction domain DYQ48_16260 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DYQ48_16265 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DYQ48_16280 PF09115 DNA polymerase III, delta subunit, C terminal DYQ48_16285 PF02618 YceG-like family DYQ48_16290 PF04715 Anthranilate synthase component I, N terminal region DYQ48_16290 PF00425 chorismate binding enzyme DYQ48_16295 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ48_16295 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ48_16300 PF00550 Phosphopantetheine attachment site DYQ48_16310 PF00698 Acyl transferase domain DYQ48_16320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYQ48_16320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYQ48_16325 PF01783 Ribosomal L32p protein family DYQ48_16330 PF02620 Large ribosomal RNA subunit accumulation protein YceD DYQ48_16335 PF02545 Maf-like protein DYQ48_16350 PF17863 AAA lid domain DYQ48_16350 PF07726 ATPase family associated with various cellular activities (AAA) DYQ48_16360 PF13559 Domain of unknown function (DUF4129) DYQ48_16360 PF01841 Transglutaminase-like superfamily DYQ48_16360 PF11992 Domain of unknown function (DUF3488) DYQ48_16370 PF01230 HIT domain DYQ48_16375 PF02132 RecR protein DYQ48_16375 PF13662 Toprim domain DYQ48_16380 PF02575 YbaB/EbfC DNA-binding family DYQ48_16385 PF12170 DNA polymerase III tau subunit V interacting with alpha DYQ48_16385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DYQ48_16385 PF12169 DNA polymerase III subunits gamma and tau domain III DYQ48_16420 PF12950 TaqI-like C-terminal specificity domain DYQ48_16420 PF07669 Eco57I restriction-modification methylase DYQ48_16510 PF02391 MoaE protein DYQ48_16515 PF02597 ThiS family DYQ48_16520 PF01967 MoaC family DYQ48_16525 PF06463 Molybdenum Cofactor Synthesis C DYQ48_16525 PF04055 Radical SAM superfamily DYQ48_16530 PF00753 Metallo-beta-lactamase superfamily DYQ48_16530 PF12706 Beta-lactamase superfamily domain DYQ48_16540 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DYQ48_16560 PF00929 Exonuclease DYQ48_16565 PF00075 RNase H DYQ48_16575 PF16123 Hydroxyacylglutathione hydrolase C-terminus DYQ48_16575 PF00753 Metallo-beta-lactamase superfamily DYQ48_16580 PF05257 CHAP domain DYQ48_16580 PF01476 LysM domain DYQ48_16605 PF00216 Bacterial DNA-binding protein DYQ48_16610 PF00004 ATPase family associated with various cellular activities (AAA) DYQ48_16610 PF05362 Lon protease (S16) C-terminal proteolytic domain DYQ48_16610 PF02190 ATP-dependent protease La (LON) substrate-binding domain DYQ48_16615 PF10431 C-terminal, D2-small domain, of ClpB protein DYQ48_16615 PF07724 AAA domain (Cdc48 subfamily) DYQ48_16615 PF06689 ClpX C4-type zinc finger DYQ48_16620 PF00574 Clp protease DYQ48_16625 PF05697 Bacterial trigger factor protein (TF) DYQ48_16625 PF05698 Bacterial trigger factor protein (TF) C-terminus DYQ48_16635 PF00072 Response regulator receiver domain DYQ48_16635 PF13188 PAS domain DYQ48_16635 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_16635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_16635 PF08448 PAS fold DYQ48_16665 PF01555 DNA methylase DYQ48_16940 PF18324 Hypothetical protein TT1725 DYQ48_16940 PF00180 Isocitrate/isopropylmalate dehydrogenase DYQ48_16950 PF00462 Glutaredoxin DYQ48_16955 PF13181 Tetratricopeptide repeat DYQ48_16955 PF01435 Peptidase family M48 DYQ48_16960 PF00072 Response regulator receiver domain DYQ48_16960 PF00486 Transcriptional regulatory protein, C terminal DYQ48_16965 PF11808 Phosphate regulon sensor protein PhoR DYQ48_16965 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_16965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_16965 PF00989 PAS fold DYQ48_16970 PF02503 Polyphosphate kinase middle domain DYQ48_16970 PF17941 Polyphosphate kinase C-terminal domain 1 DYQ48_16970 PF13089 Polyphosphate kinase N-terminal domain DYQ48_16970 PF13090 Polyphosphate kinase C-terminal domain 2 DYQ48_16975 PF02541 Ppx/GppA phosphatase family DYQ48_16980 PF00534 Glycosyl transferases group 1 DYQ48_16980 PF13439 Glycosyltransferase Family 4 DYQ48_16985 PF01569 PAP2 superfamily DYQ48_16990 PF00149 Calcineurin-like phosphoesterase DYQ48_17005 PF04305 Protein of unknown function (DUF455) DYQ48_17010 PF00156 Phosphoribosyl transferase domain DYQ48_17025 PF02875 Mur ligase family, glutamate ligase domain DYQ48_17025 PF08245 Mur ligase middle domain DYQ48_17035 PF00300 Histidine phosphatase superfamily (branch 1) DYQ48_17040 PF10459 Peptidase S46 DYQ48_17045 PF05506 Domain of unknown function (DUF756) DYQ48_17045 PF04185 Phosphoesterase family DYQ48_17060 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_17060 PF00107 Zinc-binding dehydrogenase DYQ48_17070 PF00005 ABC transporter DYQ48_17070 PF12857 TOBE-like domain DYQ48_17070 PF17850 CysA C-terminal regulatory domain DYQ48_17075 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_17080 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_17090 PF00155 Aminotransferase class I and II DYQ48_17100 PF00849 RNA pseudouridylate synthase DYQ48_17110 PF00691 OmpA family DYQ48_17110 PF00223 Photosystem I psaA/psaB protein DYQ48_17120 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_17120 PF00107 Zinc-binding dehydrogenase DYQ48_17125 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_17125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ48_17140 PF00043 Glutathione S-transferase, C-terminal domain DYQ48_17140 PF02798 Glutathione S-transferase, N-terminal domain DYQ48_17145 PF00056 lactate/malate dehydrogenase, NAD binding domain DYQ48_17145 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DYQ48_17150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYQ48_17165 PF01425 Amidase DYQ48_17175 PF01474 Class-II DAHP synthetase family DYQ48_17180 PF02600 Disulfide bond formation protein DsbB DYQ48_17190 PF01196 Ribosomal protein L17 DYQ48_17195 PF01000 RNA polymerase Rpb3/RpoA insert domain DYQ48_17195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DYQ48_17195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DYQ48_17200 PF01479 S4 domain DYQ48_17200 PF00163 Ribosomal protein S4/S9 N-terminal domain DYQ48_17205 PF00411 Ribosomal protein S11 DYQ48_17210 PF00416 Ribosomal protein S13/S18 DYQ48_17215 PF00344 SecY translocase DYQ48_17220 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DYQ48_17225 PF00327 Ribosomal protein L30p/L7e DYQ48_17230 PF00333 Ribosomal protein S5, N-terminal domain DYQ48_17230 PF03719 Ribosomal protein S5, C-terminal domain DYQ48_17235 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DYQ48_17240 PF00347 Ribosomal protein L6 DYQ48_17245 PF00410 Ribosomal protein S8 DYQ48_17250 PF00253 Ribosomal protein S14p/S29e DYQ48_17255 PF00673 ribosomal L5P family C-terminus DYQ48_17255 PF00281 Ribosomal protein L5 DYQ48_17260 PF00467 KOW motif DYQ48_17260 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DYQ48_17265 PF00238 Ribosomal protein L14p/L23e DYQ48_17270 PF00366 Ribosomal protein S17 DYQ48_17275 PF00831 Ribosomal L29 protein DYQ48_17280 PF00252 Ribosomal protein L16p/L10e DYQ48_17285 PF07650 KH domain DYQ48_17285 PF00189 Ribosomal protein S3, C-terminal domain DYQ48_17290 PF00237 Ribosomal protein L22p/L17e DYQ48_17295 PF00203 Ribosomal protein S19 DYQ48_17300 PF00181 Ribosomal Proteins L2, RNA binding domain DYQ48_17300 PF03947 Ribosomal Proteins L2, C-terminal domain DYQ48_17305 PF00276 Ribosomal protein L23 DYQ48_17310 PF00573 Ribosomal protein L4/L1 family DYQ48_17315 PF00297 Ribosomal protein L3 DYQ48_17320 PF00338 Ribosomal protein S10p/S20e DYQ48_17325 PF03143 Elongation factor Tu C-terminal domain DYQ48_17325 PF00009 Elongation factor Tu GTP binding domain DYQ48_17325 PF03144 Elongation factor Tu domain 2 DYQ48_17330 PF03144 Elongation factor Tu domain 2 DYQ48_17330 PF00009 Elongation factor Tu GTP binding domain DYQ48_17330 PF03764 Elongation factor G, domain IV DYQ48_17330 PF14492 Elongation Factor G, domain II DYQ48_17330 PF00679 Elongation factor G C-terminus DYQ48_17335 PF00177 Ribosomal protein S7p/S5e DYQ48_17340 PF00164 Ribosomal protein S12/S23 DYQ48_17345 PF04983 RNA polymerase Rpb1, domain 3 DYQ48_17345 PF05000 RNA polymerase Rpb1, domain 4 DYQ48_17345 PF04998 RNA polymerase Rpb1, domain 5 DYQ48_17345 PF04997 RNA polymerase Rpb1, domain 1 DYQ48_17345 PF00623 RNA polymerase Rpb1, domain 2 DYQ48_17350 PF04563 RNA polymerase beta subunit DYQ48_17350 PF00562 RNA polymerase Rpb2, domain 6 DYQ48_17350 PF04560 RNA polymerase Rpb2, domain 7 DYQ48_17350 PF10385 RNA polymerase beta subunit external 1 domain DYQ48_17350 PF04565 RNA polymerase Rpb2, domain 3 DYQ48_17350 PF04561 RNA polymerase Rpb2, domain 2 DYQ48_17355 PF16320 Ribosomal protein L7/L12 dimerisation domain DYQ48_17355 PF00542 Ribosomal protein L7/L12 C-terminal domain DYQ48_17360 PF00466 Ribosomal protein L10 DYQ48_17365 PF00687 Ribosomal protein L1p/L10e family DYQ48_17370 PF03946 Ribosomal protein L11, N-terminal domain DYQ48_17370 PF00298 Ribosomal protein L11, RNA binding domain DYQ48_17375 PF00467 KOW motif DYQ48_17375 PF02357 Transcription termination factor nusG DYQ48_17380 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DYQ48_17390 PF00009 Elongation factor Tu GTP binding domain DYQ48_17390 PF03144 Elongation factor Tu domain 2 DYQ48_17390 PF03143 Elongation factor Tu C-terminal domain DYQ48_17420 PF08774 VRR-NUC domain DYQ48_17420 PF04851 Type III restriction enzyme, res subunit DYQ48_17425 PF18273 Type III R-M EcoP15I C-terminal domain DYQ48_17425 PF01555 DNA methylase DYQ48_17455 PF13356 Arm DNA-binding domain DYQ48_17455 PF00589 Phage integrase family DYQ48_17460 PF01926 50S ribosome-binding GTPase DYQ48_17460 PF06071 Protein of unknown function (DUF933) DYQ48_17465 PF01195 Peptidyl-tRNA hydrolase DYQ48_17470 PF01386 Ribosomal L25p family DYQ48_17470 PF14693 Ribosomal protein TL5, C-terminal domain DYQ48_17475 PF14572 Phosphoribosyl synthetase-associated domain DYQ48_17475 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYQ48_17485 PF08544 GHMP kinases C terminal DYQ48_17485 PF00288 GHMP kinases N terminal domain DYQ48_17490 PF03550 Outer membrane lipoprotein LolB DYQ48_17500 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DYQ48_17500 PF01488 Shikimate / quinate 5-dehydrogenase DYQ48_17500 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DYQ48_17505 PF00472 RF-1 domain DYQ48_17505 PF03462 PCRF domain DYQ48_17520 PF00994 Probable molybdopterin binding domain DYQ48_17525 PF03976 Polyphosphate kinase 2 (PPK2) DYQ48_17535 PF00708 Acylphosphatase DYQ48_17540 PF08534 Redoxin DYQ48_17545 PF03631 Virulence factor BrkB DYQ48_17550 PF03358 NADPH-dependent FMN reductase DYQ48_17565 PF04073 Aminoacyl-tRNA editing domain DYQ48_17570 PF04151 Bacterial pre-peptidase C-terminal domain DYQ48_17570 PF00082 Subtilase family DYQ48_17580 PF00082 Subtilase family DYQ48_17580 PF04151 Bacterial pre-peptidase C-terminal domain DYQ48_17585 PF01063 Amino-transferase class IV DYQ48_17635 PF00476 DNA polymerase family A DYQ48_17635 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DYQ48_17635 PF01612 3'-5' exonuclease DYQ48_17635 PF01367 5'-3' exonuclease, C-terminal SAM fold DYQ48_17640 PF00293 NUDIX domain DYQ48_17650 PF00561 alpha/beta hydrolase fold DYQ48_17655 PF17827 PrmC N-terminal domain DYQ48_17655 PF05175 Methyltransferase small domain DYQ48_17660 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYQ48_17660 PF00578 AhpC/TSA family DYQ48_17665 PF13192 Thioredoxin domain DYQ48_17665 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_17670 PF03466 LysR substrate binding domain DYQ48_17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_17675 PF01272 Transcription elongation factor, GreA/GreB, C-term DYQ48_17675 PF14760 Rnk N-terminus DYQ48_17680 PF00923 Transaldolase/Fructose-6-phosphate aldolase DYQ48_17690 PF01625 Peptide methionine sulfoxide reductase DYQ48_17700 PF00196 Bacterial regulatory proteins, luxR family DYQ48_17700 PF00072 Response regulator receiver domain DYQ48_17705 PF01627 Hpt domain DYQ48_17705 PF00072 Response regulator receiver domain DYQ48_17705 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_17705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYQ48_17705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_17705 PF00672 HAMP domain DYQ48_17710 PF00072 Response regulator receiver domain DYQ48_17710 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_17725 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYQ48_17725 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DYQ48_17730 PF00892 EamA-like transporter family DYQ48_17745 PF18125 RlmM ferredoxin-like domain DYQ48_17745 PF01728 FtsJ-like methyltransferase DYQ48_17750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DYQ48_17750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DYQ48_17755 PF08450 SMP-30/Gluconolactonase/LRE-like region DYQ48_17775 PF00378 Enoyl-CoA hydratase/isomerase DYQ48_17780 PF00171 Aldehyde dehydrogenase family DYQ48_17785 PF00501 AMP-binding enzyme DYQ48_17785 PF13193 AMP-binding enzyme C-terminal domain DYQ48_17790 PF03466 LysR substrate binding domain DYQ48_17790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_17795 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DYQ48_17795 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DYQ48_17800 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DYQ48_17805 PF00392 Bacterial regulatory proteins, gntR family DYQ48_17805 PF07729 FCD domain DYQ48_17825 PF01494 FAD binding domain DYQ48_17830 PF01494 FAD binding domain DYQ48_17840 PF01923 Cobalamin adenosyltransferase DYQ48_17845 PF00850 Histone deacetylase domain DYQ48_17850 PF03968 OstA-like protein DYQ48_17850 PF04453 LPS transport system D DYQ48_17855 PF09312 SurA N-terminal domain DYQ48_17855 PF00639 PPIC-type PPIASE domain DYQ48_17860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DYQ48_17865 PF00398 Ribosomal RNA adenine dimethylase DYQ48_17870 PF04379 ApaG domain DYQ48_17875 PF00149 Calcineurin-like phosphoesterase DYQ48_17880 PF03358 NADPH-dependent FMN reductase DYQ48_17885 PF00296 Luciferase-like monooxygenase DYQ48_17895 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_17900 PF00005 ABC transporter DYQ48_17905 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYQ48_17905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYQ48_17910 PF00186 Dihydrofolate reductase DYQ48_17915 PF00303 Thymidylate synthase DYQ48_17920 PF01790 Prolipoprotein diacylglyceryl transferase DYQ48_17940 PF01219 Prokaryotic diacylglycerol kinase DYQ48_17950 PF08521 Two-component sensor kinase N-terminal DYQ48_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_17950 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_17955 PF00072 Response regulator receiver domain DYQ48_17955 PF00486 Transcriptional regulatory protein, C terminal DYQ48_17960 PF13472 GDSL-like Lipase/Acylhydrolase family DYQ48_17965 PF00005 ABC transporter DYQ48_17975 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DYQ48_17985 PF00005 ABC transporter DYQ48_17990 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_18055 PF00593 TonB dependent receptor DYQ48_18055 PF07715 TonB-dependent Receptor Plug Domain DYQ48_18065 PF00248 Aldo/keto reductase family DYQ48_18070 PF07662 Na+ dependent nucleoside transporter C-terminus DYQ48_18070 PF07670 Nucleoside recognition DYQ48_18070 PF01773 Na+ dependent nucleoside transporter N-terminus DYQ48_18075 PF00294 pfkB family carbohydrate kinase DYQ48_18075 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DYQ48_18085 PF01207 Dihydrouridine synthase (Dus) DYQ48_18090 PF13847 Methyltransferase domain DYQ48_18100 PF02772 S-adenosylmethionine synthetase, central domain DYQ48_18100 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYQ48_18100 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYQ48_18105 PF00328 Histidine phosphatase superfamily (branch 2) DYQ48_18110 PF00223 Photosystem I psaA/psaB protein DYQ48_18110 PF00691 OmpA family DYQ48_18130 PF00311 Phosphoenolpyruvate carboxylase DYQ48_18140 PF05221 S-adenosyl-L-homocysteine hydrolase DYQ48_18140 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DYQ48_18180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DYQ48_18195 PF08659 KR domain DYQ48_18195 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ48_18195 PF00550 Phosphopantetheine attachment site DYQ48_18195 PF00698 Acyl transferase domain DYQ48_18195 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_18195 PF00107 Zinc-binding dehydrogenase DYQ48_18195 PF16197 Ketoacyl-synthetase C-terminal extension DYQ48_18195 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ48_18195 PF14765 Polyketide synthase dehydratase DYQ48_18205 PF02219 Methylenetetrahydrofolate reductase DYQ48_18225 PF00293 NUDIX domain DYQ48_18235 PF07516 SecA Wing and Scaffold domain DYQ48_18235 PF01043 SecA preprotein cross-linking domain DYQ48_18235 PF07517 SecA DEAD-like domain DYQ48_18235 PF02810 SEC-C motif DYQ48_18240 PF01476 LysM domain DYQ48_18240 PF08525 Opacity-associated protein A N-terminal motif DYQ48_18240 PF01551 Peptidase family M23 DYQ48_18250 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DYQ48_18255 PF00091 Tubulin/FtsZ family, GTPase domain DYQ48_18255 PF12327 FtsZ family, C-terminal domain DYQ48_18265 PF02491 SHS2 domain inserted in FTSA DYQ48_18270 PF03799 Cell division protein FtsQ DYQ48_18270 PF08478 POTRA domain, FtsQ-type DYQ48_18275 PF01820 D-ala D-ala ligase N-terminus DYQ48_18275 PF07478 D-ala D-ala ligase C-terminus DYQ48_18280 PF08245 Mur ligase middle domain DYQ48_18280 PF02875 Mur ligase family, glutamate ligase domain DYQ48_18280 PF01225 Mur ligase family, catalytic domain DYQ48_18285 PF04101 Glycosyltransferase family 28 C-terminal domain DYQ48_18285 PF03033 Glycosyltransferase family 28 N-terminal domain DYQ48_18290 PF01098 Cell cycle protein DYQ48_18295 PF00953 Glycosyl transferase family 4 DYQ48_18300 PF02875 Mur ligase family, glutamate ligase domain DYQ48_18300 PF01225 Mur ligase family, catalytic domain DYQ48_18300 PF08245 Mur ligase middle domain DYQ48_18305 PF02875 Mur ligase family, glutamate ligase domain DYQ48_18305 PF08245 Mur ligase middle domain DYQ48_18305 PF01225 Mur ligase family, catalytic domain DYQ48_18310 PF00905 Penicillin binding protein transpeptidase domain DYQ48_18310 PF03717 Penicillin-binding Protein dimerisation domain DYQ48_18315 PF04999 Cell division protein FtsL DYQ48_18320 PF01795 MraW methylase family DYQ48_18325 PF02381 MraZ protein, putative antitoxin-like DYQ48_18350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYQ48_18360 PF02021 Uncharacterised protein family UPF0102 DYQ48_18365 PF04307 LexA-binding, inner membrane-associated putative hydrolase DYQ48_18370 PF01565 FAD binding domain DYQ48_18370 PF02913 FAD linked oxidases, C-terminal domain DYQ48_18375 PF00486 Transcriptional regulatory protein, C terminal DYQ48_18375 PF00072 Response regulator receiver domain DYQ48_18380 PF13493 Domain of unknown function (DUF4118) DYQ48_18380 PF13492 GAF domain DYQ48_18380 PF02702 Osmosensitive K+ channel His kinase sensor domain DYQ48_18380 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_18380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_18385 PF02669 K+-transporting ATPase, c chain DYQ48_18395 PF03814 Potassium-transporting ATPase A subunit DYQ48_18425 PF02769 AIR synthase related protein, C-terminal domain DYQ48_18425 PF00586 AIR synthase related protein, N-terminal domain DYQ48_18430 PF01029 NusB family DYQ48_18435 PF00885 6,7-dimethyl-8-ribityllumazine synthase DYQ48_18445 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DYQ48_18445 PF00925 GTP cyclohydrolase II DYQ48_18450 PF00677 Lumazine binding domain DYQ48_18465 PF01872 RibD C-terminal domain DYQ48_18465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYQ48_18475 PF03477 ATP cone domain DYQ48_18480 PF00464 Serine hydroxymethyltransferase DYQ48_18490 PF12848 ABC transporter DYQ48_18490 PF00005 ABC transporter DYQ48_18495 PF01327 Polypeptide deformylase DYQ48_18510 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DYQ48_18510 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYQ48_18545 PF07715 TonB-dependent Receptor Plug Domain DYQ48_18545 PF00593 TonB dependent receptor DYQ48_18555 PF00392 Bacterial regulatory proteins, gntR family DYQ48_18555 PF07702 UTRA domain DYQ48_18590 PF00263 Bacterial type II and III secretion system protein DYQ48_18590 PF03958 Bacterial type II/III secretion system short domain DYQ48_18600 PF10741 Type II secretion system (T2SS), protein M subtype b DYQ48_18605 PF05137 Fimbrial assembly protein (PilN) DYQ48_18610 PF03934 Type II secretion system (T2SS), protein K DYQ48_18620 PF07963 Prokaryotic N-terminal methylation motif DYQ48_18625 PF12019 Type II transport protein GspH DYQ48_18630 PF08334 Type II secretion system (T2SS), protein G DYQ48_18635 PF00482 Type II secretion system (T2SS), protein F DYQ48_18640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DYQ48_18640 PF00437 Type II/IV secretion system protein DYQ48_18645 PF00082 Subtilase family DYQ48_18645 PF04151 Bacterial pre-peptidase C-terminal domain DYQ48_18650 PF13018 Extended Signal Peptide of Type V secretion system DYQ48_18650 PF05662 Coiled stalk of trimeric autotransporter adhesin DYQ48_18650 PF03895 YadA-like membrane anchor domain DYQ48_18650 PF05658 Head domain of trimeric autotransporter adhesin DYQ48_18655 PF00082 Subtilase family DYQ48_18655 PF04151 Bacterial pre-peptidase C-terminal domain DYQ48_18660 PF05662 Coiled stalk of trimeric autotransporter adhesin DYQ48_18660 PF05658 Head domain of trimeric autotransporter adhesin DYQ48_18660 PF03895 YadA-like membrane anchor domain DYQ48_18660 PF13018 Extended Signal Peptide of Type V secretion system DYQ48_18665 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DYQ48_18665 PF02769 AIR synthase related protein, C-terminal domain DYQ48_18665 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DYQ48_18670 PF13098 Thioredoxin-like domain DYQ48_18670 PF10411 Disulfide bond isomerase protein N-terminus DYQ48_18675 PF02899 Phage integrase, N-terminal SAM-like domain DYQ48_18675 PF00589 Phage integrase family DYQ48_18690 PF03739 Lipopolysaccharide export system permease LptF/LptG DYQ48_18700 PF00883 Cytosol aminopeptidase family, catalytic domain DYQ48_18700 PF02789 Cytosol aminopeptidase family, N-terminal domain DYQ48_18710 PF10458 Valyl tRNA synthetase tRNA binding arm DYQ48_18710 PF00133 tRNA synthetases class I (I, L, M and V) DYQ48_18710 PF08264 Anticodon-binding domain of tRNA DYQ48_18720 PF00544 Pectate lyase DYQ48_18740 PF01066 CDP-alcohol phosphatidyltransferase DYQ48_18750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYQ48_18750 PF04073 Aminoacyl-tRNA editing domain DYQ48_18750 PF03129 Anticodon binding domain DYQ48_18765 PF02405 Permease MlaE DYQ48_18770 PF00005 ABC transporter DYQ48_18775 PF02470 MlaD protein DYQ48_18775 PF03886 ABC-type transport auxiliary lipoprotein component DYQ48_18800 PF05045 Rhamnan synthesis protein F DYQ48_18800 PF14307 Glycosyltransferase WbsX DYQ48_18810 PF01144 Coenzyme A transferase DYQ48_18815 PF01144 Coenzyme A transferase DYQ48_18820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ48_18820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ48_18820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ48_18820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ48_18825 PF00483 Nucleotidyl transferase DYQ48_18825 PF01050 Mannose-6-phosphate isomerase DYQ48_18830 PF04321 RmlD substrate binding domain DYQ48_18835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DYQ48_18840 PF00483 Nucleotidyl transferase DYQ48_18845 PF16363 GDP-mannose 4,6 dehydratase DYQ48_18850 PF01012 Electron transfer flavoprotein domain DYQ48_18855 PF01012 Electron transfer flavoprotein domain DYQ48_18855 PF00766 Electron transfer flavoprotein FAD-binding domain DYQ48_18865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DYQ48_18870 PF00535 Glycosyl transferase family 2 DYQ48_18890 PF16363 GDP-mannose 4,6 dehydratase DYQ48_18895 PF16363 GDP-mannose 4,6 dehydratase DYQ48_18910 PF13439 Glycosyltransferase Family 4 DYQ48_18910 PF00534 Glycosyl transferases group 1 DYQ48_18915 PF00069 Protein kinase domain DYQ48_18915 PF13847 Methyltransferase domain DYQ48_18920 PF00005 ABC transporter DYQ48_18935 PF01053 Cys/Met metabolism PLP-dependent enzyme DYQ48_18940 PF00291 Pyridoxal-phosphate dependent enzyme DYQ48_18940 PF00571 CBS domain DYQ48_18960 PF00437 Type II/IV secretion system protein DYQ48_18965 PF02798 Glutathione S-transferase, N-terminal domain DYQ48_18965 PF14497 Glutathione S-transferase, C-terminal domain DYQ48_18980 PF00271 Helicase conserved C-terminal domain DYQ48_18980 PF00270 DEAD/DEAH box helicase DYQ48_18990 PF00593 TonB dependent receptor DYQ48_18990 PF07715 TonB-dependent Receptor Plug Domain DYQ48_18995 PF01242 6-pyruvoyl tetrahydropterin synthase DYQ48_19010 PF13185 GAF domain DYQ48_19020 PF00756 Putative esterase DYQ48_19025 PF07715 TonB-dependent Receptor Plug Domain DYQ48_19025 PF00593 TonB dependent receptor DYQ48_19030 PF13419 Haloacid dehalogenase-like hydrolase DYQ48_19035 PF11798 IMS family HHH motif DYQ48_19035 PF11799 impB/mucB/samB family C-terminal domain DYQ48_19035 PF00817 impB/mucB/samB family DYQ48_19040 PF07977 FabA-like domain DYQ48_19045 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ48_19045 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ48_19055 PF01432 Peptidase family M3 DYQ48_19070 PF07732 Multicopper oxidase DYQ48_19070 PF07731 Multicopper oxidase DYQ48_19070 PF00394 Multicopper oxidase DYQ48_19075 PF05275 Copper resistance protein B precursor (CopB) DYQ48_19080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYQ48_19100 PF13545 Crp-like helix-turn-helix domain DYQ48_19100 PF00027 Cyclic nucleotide-binding domain DYQ48_19105 PF01380 SIS domain DYQ48_19110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_19115 PF00005 ABC transporter DYQ48_19120 PF00005 ABC transporter DYQ48_19120 PF12704 MacB-like periplasmic core domain DYQ48_19120 PF02687 FtsX-like permease family DYQ48_19125 PF02687 FtsX-like permease family DYQ48_19125 PF12704 MacB-like periplasmic core domain DYQ48_19130 PF00158 Sigma-54 interaction domain DYQ48_19130 PF00072 Response regulator receiver domain DYQ48_19130 PF02954 Bacterial regulatory protein, Fis family DYQ48_19135 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_19135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_19145 PF12804 MobA-like NTP transferase domain DYQ48_19145 PF14602 Hexapeptide repeat of succinyl-transferase DYQ48_19145 PF00132 Bacterial transferase hexapeptide (six repeats) DYQ48_19155 PF01817 Chorismate mutase type II DYQ48_19160 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DYQ48_19160 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DYQ48_19165 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ48_19165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ48_19170 PF00231 ATP synthase DYQ48_19175 PF00306 ATP synthase alpha/beta chain, C terminal domain DYQ48_19175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ48_19175 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYQ48_19180 PF00213 ATP synthase delta (OSCP) subunit DYQ48_19185 PF00430 ATP synthase B/B' CF(0) DYQ48_19190 PF00137 ATP synthase subunit C DYQ48_19195 PF00119 ATP synthase A chain DYQ48_19210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYQ48_19210 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_19220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYQ48_19220 PF00364 Biotin-requiring enzyme DYQ48_19220 PF02817 e3 binding domain DYQ48_19245 PF03180 NLPA lipoprotein DYQ48_19250 PF00528 Binding-protein-dependent transport system inner membrane component DYQ48_19255 PF00005 ABC transporter DYQ48_19255 PF09383 NIL domain DYQ48_19260 PF00892 EamA-like transporter family DYQ48_19285 PF01479 S4 domain DYQ48_19285 PF00849 RNA pseudouridylate synthase DYQ48_19290 PF05175 Methyltransferase small domain DYQ48_19290 PF08468 Methyltransferase small domain N-terminal DYQ48_19305 PF07995 Glucose / Sorbosone dehydrogenase DYQ48_19315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_19315 PF00072 Response regulator receiver domain DYQ48_19315 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYQ48_19315 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_19335 PF00842 Alanine racemase, C-terminal domain DYQ48_19335 PF01168 Alanine racemase, N-terminal domain DYQ48_19340 PF01266 FAD dependent oxidoreductase DYQ48_19345 PF01037 Lrp/AsnC ligand binding domain DYQ48_19355 PF01641 SelR domain DYQ48_19370 PF01618 MotA/TolQ/ExbB proton channel family DYQ48_19375 PF00691 OmpA family DYQ48_19375 PF13677 Membrane MotB of proton-channel complex MotA/MotB DYQ48_19405 PF05598 Transposase domain (DUF772) DYQ48_19405 PF01609 Transposase DDE domain DYQ48_19435 PF00005 ABC transporter DYQ48_19435 PF03412 Peptidase C39 family DYQ48_19435 PF00664 ABC transporter transmembrane region DYQ48_19460 PF01061 ABC-2 type transporter DYQ48_19465 PF00005 ABC transporter DYQ48_19475 PF00999 Sodium/hydrogen exchanger family DYQ48_19490 PF02469 Fasciclin domain DYQ48_19495 PF03167 Uracil DNA glycosylase superfamily DYQ48_19510 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DYQ48_19520 PF03466 LysR substrate binding domain DYQ48_19520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_19525 PF03358 NADPH-dependent FMN reductase DYQ48_19530 PF00248 Aldo/keto reductase family DYQ48_19540 PF01431 Peptidase family M13 DYQ48_19540 PF05649 Peptidase family M13 DYQ48_19565 PF13520 Amino acid permease DYQ48_19575 PF00072 Response regulator receiver domain DYQ48_19575 PF04397 LytTr DNA-binding domain DYQ48_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_19580 PF02743 Cache domain DYQ48_19580 PF00672 HAMP domain DYQ48_19580 PF06580 Histidine kinase DYQ48_19600 PF05974 Domain of unknown function (DUF892) DYQ48_19605 PF05067 Manganese containing catalase DYQ48_19615 PF01739 CheR methyltransferase, SAM binding domain DYQ48_19615 PF01339 CheB methylesterase DYQ48_19615 PF08448 PAS fold DYQ48_19615 PF03705 CheR methyltransferase, all-alpha domain DYQ48_19630 PF02954 Bacterial regulatory protein, Fis family DYQ48_19630 PF00072 Response regulator receiver domain DYQ48_19630 PF00158 Sigma-54 interaction domain DYQ48_19655 PF16363 GDP-mannose 4,6 dehydratase DYQ48_19665 PF03275 UDP-galactopyranose mutase DYQ48_19675 PF00664 ABC transporter transmembrane region DYQ48_19675 PF00005 ABC transporter DYQ48_19690 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_19690 PF13823 Alcohol dehydrogenase GroES-associated DYQ48_19690 PF00107 Zinc-binding dehydrogenase DYQ48_19710 PF03466 LysR substrate binding domain DYQ48_19710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_19715 PF07690 Major Facilitator Superfamily DYQ48_19740 PF07715 TonB-dependent Receptor Plug Domain DYQ48_19740 PF00593 TonB dependent receptor DYQ48_19755 PF00005 ABC transporter DYQ48_19765 PF03466 LysR substrate binding domain DYQ48_19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_19770 PF01042 Endoribonuclease L-PSP DYQ48_19800 PF01740 STAS domain DYQ48_19800 PF00916 Sulfate permease family DYQ48_19820 PF01965 DJ-1/PfpI family DYQ48_19820 PF12833 Helix-turn-helix domain DYQ48_19830 PF07690 Major Facilitator Superfamily DYQ48_19835 PF00440 Bacterial regulatory proteins, tetR family DYQ48_19840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_19840 PF03466 LysR substrate binding domain DYQ48_19845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYQ48_19865 PF04542 Sigma-70 region 2 DYQ48_19865 PF00140 Sigma-70 factor, region 1.2 DYQ48_19865 PF03979 Sigma-70 factor, region 1.1 DYQ48_19865 PF04539 Sigma-70 region 3 DYQ48_19865 PF04546 Sigma-70, non-essential region DYQ48_19865 PF04545 Sigma-70, region 4 DYQ48_19870 PF02580 D-Tyr-tRNA(Tyr) deacylase DYQ48_19875 PF03279 Bacterial lipid A biosynthesis acyltransferase DYQ48_19885 PF00925 GTP cyclohydrolase II DYQ48_19910 PF00535 Glycosyl transferase family 2 DYQ48_19925 PF01029 NusB family DYQ48_19925 PF01189 16S rRNA methyltransferase RsmB/F DYQ48_19930 PF02911 Formyl transferase, C-terminal domain DYQ48_19930 PF00551 Formyl transferase DYQ48_19935 PF01327 Polypeptide deformylase DYQ48_19940 PF01476 LysM domain DYQ48_19945 PF02481 DNA recombination-mediator protein A DYQ48_19945 PF17782 DprA winged helix domain DYQ48_19950 PF04361 Protein of unknown function (DUF494) DYQ48_19955 PF00114 Pilin (bacterial filament) DYQ48_19955 PF07963 Prokaryotic N-terminal methylation motif DYQ48_19965 PF01131 DNA topoisomerase DYQ48_19965 PF13368 Topoisomerase C-terminal repeat DYQ48_19965 PF01751 Toprim domain DYQ48_19970 PF01300 Telomere recombination DYQ48_19995 PF01343 Peptidase family S49 DYQ48_20000 PF01554 MatE DYQ48_20015 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DYQ48_20015 PF18074 Primosomal protein N C-terminal domain DYQ48_20015 PF17764 3′ DNA-binding domain (3′BD) DYQ48_20015 PF00271 Helicase conserved C-terminal domain DYQ48_20015 PF00270 DEAD/DEAH box helicase DYQ48_20025 PF13417 Glutathione S-transferase, N-terminal domain DYQ48_20025 PF00043 Glutathione S-transferase, C-terminal domain DYQ48_20045 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYQ48_20050 PF03458 UPF0126 domain DYQ48_20055 PF04542 Sigma-70 region 2 DYQ48_20055 PF04545 Sigma-70, region 4 DYQ48_20060 PF03167 Uracil DNA glycosylase superfamily DYQ48_20065 PF00072 Response regulator receiver domain DYQ48_20070 PF18075 FtsX extracellular domain DYQ48_20075 PF00005 ABC transporter DYQ48_20080 PF12300 ATP-dependent RNA helicase RhlB DYQ48_20080 PF00271 Helicase conserved C-terminal domain DYQ48_20080 PF00270 DEAD/DEAH box helicase DYQ48_20085 PF00085 Thioredoxin DYQ48_20090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYQ48_20090 PF07498 Rho termination factor, N-terminal domain DYQ48_20090 PF07497 Rho termination factor, RNA-binding domain DYQ48_20110 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DYQ48_20125 PF03971 Monomeric isocitrate dehydrogenase DYQ48_20140 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DYQ48_20140 PF14489 QueF-like protein DYQ48_20145 PF01546 Peptidase family M20/M25/M40 DYQ48_20145 PF07687 Peptidase dimerisation domain DYQ48_20150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_20155 PF00873 AcrB/AcrD/AcrF family DYQ48_20160 PF00873 AcrB/AcrD/AcrF family DYQ48_20170 PF13378 Enolase C-terminal domain-like DYQ48_20170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYQ48_20180 PF01510 N-acetylmuramoyl-L-alanine amidase DYQ48_20185 PF01427 D-ala-D-ala dipeptidase DYQ48_20225 PF07063 Domain of unknown function (DUF1338) DYQ48_20245 PF13520 Amino acid permease DYQ48_20260 PF05360 yiaA/B two helix domain DYQ48_20265 PF07995 Glucose / Sorbosone dehydrogenase DYQ48_20275 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ48_20275 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_20275 PF14310 Fibronectin type III-like domain DYQ48_20280 PF02152 Dihydroneopterin aldolase DYQ48_20285 PF00814 Glycoprotease family DYQ48_20290 PF01165 Ribosomal protein S21 DYQ48_20295 PF09424 Yqey-like protein DYQ48_20300 PF03631 Virulence factor BrkB DYQ48_20305 PF08278 DNA primase DnaG DnaB-binding DYQ48_20305 PF08275 DNA primase catalytic core, N-terminal domain DYQ48_20305 PF01807 CHC2 zinc finger DYQ48_20305 PF10410 DnaB-helicase binding domain of primase DYQ48_20310 PF13593 SBF-like CPA transporter family (DUF4137) DYQ48_20320 PF01040 UbiA prenyltransferase family DYQ48_20345 PF00510 Cytochrome c oxidase subunit III DYQ48_20350 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DYQ48_20360 PF00115 Cytochrome C and Quinol oxidase polypeptide I DYQ48_20365 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DYQ48_20365 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DYQ48_20375 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DYQ48_20375 PF01619 Proline dehydrogenase DYQ48_20375 PF14850 DNA-binding domain of Proline dehydrogenase DYQ48_20375 PF00171 Aldehyde dehydrogenase family DYQ48_20405 PF00579 tRNA synthetases class I (W and Y) DYQ48_20410 PF01551 Peptidase family M23 DYQ48_20410 PF04225 Opacity-associated protein A LysM-like domain DYQ48_20415 PF03702 Anhydro-N-acetylmuramic acid kinase DYQ48_20425 PF07690 Major Facilitator Superfamily DYQ48_20430 PF03372 Endonuclease/Exonuclease/phosphatase family DYQ48_20435 PF00156 Phosphoribosyl transferase domain DYQ48_20445 PF13614 AAA domain DYQ48_20450 PF02195 ParB-like nuclease domain DYQ48_20450 PF17762 HTH domain found in ParB protein DYQ48_20460 PF01370 NAD dependent epimerase/dehydratase family DYQ48_20465 PF00535 Glycosyl transferase family 2 DYQ48_20480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYQ48_20480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYQ48_20480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYQ48_20480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYQ48_20485 PF00692 dUTPase DYQ48_20490 PF04127 DNA / pantothenate metabolism flavoprotein DYQ48_20490 PF02441 Flavoprotein DYQ48_20495 PF04002 RadC-like JAB domain DYQ48_20500 PF00750 tRNA synthetases class I (R) DYQ48_20500 PF05746 DALR anticodon binding domain DYQ48_20500 PF03485 Arginyl tRNA synthetase N terminal domain DYQ48_20510 PF00106 short chain dehydrogenase DYQ48_20515 PF01757 Acyltransferase family DYQ48_20520 PF03033 Glycosyltransferase family 28 N-terminal domain DYQ48_20525 PF00550 Phosphopantetheine attachment site DYQ48_20525 PF13193 AMP-binding enzyme C-terminal domain DYQ48_20525 PF00668 Condensation domain DYQ48_20525 PF00501 AMP-binding enzyme DYQ48_20525 PF00975 Thioesterase domain DYQ48_20530 PF17810 Arginine decarboxylase helical bundle domain DYQ48_20530 PF17944 Arginine decarboxylase C-terminal helical extension DYQ48_20530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYQ48_20535 PF17284 Spermidine synthase tetramerisation domain DYQ48_20560 PF00543 Nitrogen regulatory protein P-II DYQ48_20565 PF04380 Membrane fusogenic activity DYQ48_20570 PF01078 Magnesium chelatase, subunit ChlI DYQ48_20570 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYQ48_20590 PF12792 CSS motif domain associated with EAL DYQ48_20590 PF00563 EAL domain DYQ48_20595 PF00487 Fatty acid desaturase DYQ48_20600 PF00970 Oxidoreductase FAD-binding domain DYQ48_20600 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ48_20600 PF00175 Oxidoreductase NAD-binding domain DYQ48_20605 PF00440 Bacterial regulatory proteins, tetR family DYQ48_20640 PF01370 NAD dependent epimerase/dehydratase family DYQ48_20640 PF08338 Domain of unknown function (DUF1731) DYQ48_20645 PF00486 Transcriptional regulatory protein, C terminal DYQ48_20645 PF00072 Response regulator receiver domain DYQ48_20650 PF08521 Two-component sensor kinase N-terminal DYQ48_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_20650 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_20670 PF13180 PDZ domain DYQ48_20670 PF00595 PDZ domain DYQ48_20690 PF01594 AI-2E family transporter DYQ48_20695 PF13419 Haloacid dehalogenase-like hydrolase DYQ48_20700 PF00883 Cytosol aminopeptidase family, catalytic domain DYQ48_20700 PF02789 Cytosol aminopeptidase family, N-terminal domain DYQ48_20725 PF00196 Bacterial regulatory proteins, luxR family DYQ48_20725 PF00072 Response regulator receiver domain DYQ48_20730 PF07730 Histidine kinase DYQ48_20735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_20740 PF00005 ABC transporter DYQ48_20760 PF00892 EamA-like transporter family DYQ48_20765 PF00892 EamA-like transporter family DYQ48_20790 PF00753 Metallo-beta-lactamase superfamily DYQ48_20795 PF00579 tRNA synthetases class I (W and Y) DYQ48_20800 PF05532 CsbD-like DYQ48_20815 PF00491 Arginase family DYQ48_20840 PF02223 Thymidylate kinase DYQ48_20855 PF03309 Type III pantothenate kinase DYQ48_20860 PF02237 Biotin protein ligase C terminal domain DYQ48_20860 PF03099 Biotin/lipoate A/B protein ligase family DYQ48_20860 PF08279 HTH domain DYQ48_20870 PF06167 Glucose-regulated metallo-peptidase M90 DYQ48_20885 PF00672 HAMP domain DYQ48_20885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_20885 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_20890 PF00072 Response regulator receiver domain DYQ48_20890 PF00486 Transcriptional regulatory protein, C terminal DYQ48_20900 PF01207 Dihydrouridine synthase (Dus) DYQ48_20925 PF06628 Catalase-related immune-responsive DYQ48_20925 PF00199 Catalase DYQ48_20930 PF13307 Helicase C-terminal domain DYQ48_20930 PF06733 DEAD_2 DYQ48_20945 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DYQ48_20945 PF08501 Shikimate dehydrogenase substrate binding domain DYQ48_20945 PF01488 Shikimate / quinate 5-dehydrogenase DYQ48_20965 PF00175 Oxidoreductase NAD-binding domain DYQ48_20965 PF00667 FAD binding domain DYQ48_20965 PF00258 Flavodoxin DYQ48_20970 PF00490 Delta-aminolevulinic acid dehydratase DYQ48_21005 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DYQ48_21005 PF00326 Prolyl oligopeptidase family DYQ48_21010 PF00043 Glutathione S-transferase, C-terminal domain DYQ48_21010 PF02798 Glutathione S-transferase, N-terminal domain DYQ48_21030 PF04820 Tryptophan halogenase DYQ48_21045 PF00005 ABC transporter DYQ48_21055 PF01381 Helix-turn-helix DYQ48_21065 PF01229 Glycosyl hydrolases family 39 DYQ48_21070 PF02583 Metal-sensitive transcriptional repressor DYQ48_21075 PF01545 Cation efflux family DYQ48_21080 PF00970 Oxidoreductase FAD-binding domain DYQ48_21080 PF00111 2Fe-2S iron-sulfur cluster binding domain DYQ48_21080 PF00175 Oxidoreductase NAD-binding domain DYQ48_21085 PF00005 ABC transporter DYQ48_21090 PF01061 ABC-2 type transporter DYQ48_21100 PF02558 Ketopantoate reductase PanE/ApbA DYQ48_21100 PF08546 Ketopantoate reductase PanE/ApbA C terminal DYQ48_21120 PF03061 Thioesterase superfamily DYQ48_21135 PF00268 Ribonucleotide reductase, small chain DYQ48_21145 PF00317 Ribonucleotide reductase, all-alpha domain DYQ48_21145 PF03477 ATP cone domain DYQ48_21145 PF02867 Ribonucleotide reductase, barrel domain DYQ48_21160 PF13607 Succinyl-CoA ligase like flavodoxin domain DYQ48_21160 PF13380 CoA binding domain DYQ48_21160 PF00583 Acetyltransferase (GNAT) family DYQ48_21175 PF07715 TonB-dependent Receptor Plug Domain DYQ48_21175 PF00593 TonB dependent receptor DYQ48_21175 PF04886 PT repeat DYQ48_21180 PF01769 Divalent cation transporter DYQ48_21180 PF00571 CBS domain DYQ48_21180 PF03448 MgtE intracellular N domain DYQ48_21190 PF00999 Sodium/hydrogen exchanger family DYQ48_21190 PF02254 TrkA-N domain DYQ48_21195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DYQ48_21195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DYQ48_21200 PF00723 Glycosyl hydrolases family 15 DYQ48_21215 PF05166 YcgL domain DYQ48_21220 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ48_21220 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ48_21235 PF04820 Tryptophan halogenase DYQ48_21285 PF07977 FabA-like domain DYQ48_21290 PF01553 Acyltransferase DYQ48_21300 PF00550 Phosphopantetheine attachment site DYQ48_21305 PF04820 Tryptophan halogenase DYQ48_21315 PF13193 AMP-binding enzyme C-terminal domain DYQ48_21315 PF00501 AMP-binding enzyme DYQ48_21340 PF01218 Coproporphyrinogen III oxidase DYQ48_21345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DYQ48_21345 PF01367 5'-3' exonuclease, C-terminal SAM fold DYQ48_21345 PF01612 3'-5' exonuclease DYQ48_21345 PF00476 DNA polymerase family A DYQ48_21355 PF00069 Protein kinase domain DYQ48_21355 PF03793 PASTA domain DYQ48_21390 PF14602 Hexapeptide repeat of succinyl-transferase DYQ48_21390 PF12464 Maltose acetyltransferase DYQ48_21400 PF00580 UvrD/REP helicase N-terminal domain DYQ48_21400 PF13361 UvrD-like helicase C-terminal domain DYQ48_21415 PF13396 Phospholipase_D-nuclease N-terminal DYQ48_21415 PF13091 PLD-like domain DYQ48_21420 PF03466 LysR substrate binding domain DYQ48_21420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_21425 PF03737 Aldolase/RraA DYQ48_21430 PF04303 PrpF protein DYQ48_21435 PF04909 Amidohydrolase DYQ48_21440 PF00471 Ribosomal protein L33 DYQ48_21445 PF00830 Ribosomal L28 family DYQ48_21450 PF00873 AcrB/AcrD/AcrF family DYQ48_21455 PF13533 Biotin-lipoyl like DYQ48_21480 PF02527 rRNA small subunit methyltransferase G DYQ48_21485 PF09423 PhoD-like phosphatase DYQ48_21485 PF16655 PhoD-like phosphatase, N-terminal domain DYQ48_21490 PF09423 PhoD-like phosphatase DYQ48_21490 PF16655 PhoD-like phosphatase, N-terminal domain DYQ48_21495 PF01648 4'-phosphopantetheinyl transferase superfamily DYQ48_21500 PF04226 Transglycosylase associated protein DYQ48_21510 PF03372 Endonuclease/Exonuclease/phosphatase family DYQ48_21525 PF00480 ROK family DYQ48_21535 PF00639 PPIC-type PPIASE domain DYQ48_21545 PF00474 Sodium:solute symporter family DYQ48_21550 PF04341 Protein of unknown function, DUF485 DYQ48_21560 PF13193 AMP-binding enzyme C-terminal domain DYQ48_21560 PF00501 AMP-binding enzyme DYQ48_21560 PF16177 Acetyl-coenzyme A synthetase N-terminus DYQ48_21565 PF00072 Response regulator receiver domain DYQ48_21565 PF00196 Bacterial regulatory proteins, luxR family DYQ48_21610 PF00248 Aldo/keto reductase family DYQ48_21625 PF01557 Fumarylacetoacetate (FAA) hydrolase family DYQ48_21630 PF13378 Enolase C-terminal domain-like DYQ48_21630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYQ48_21645 PF05336 L-rhamnose mutarotase DYQ48_21650 PF07690 Major Facilitator Superfamily DYQ48_21655 PF01614 Bacterial transcriptional regulator DYQ48_21655 PF09339 IclR helix-turn-helix domain DYQ48_21670 PF02659 Putative manganese efflux pump DYQ48_21675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_21675 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_21685 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DYQ48_21685 PF06165 Glycosyltransferase family 36 DYQ48_21700 PF01011 PQQ enzyme repeat DYQ48_21700 PF13360 PQQ-like domain DYQ48_21700 PF13570 PQQ-like domain DYQ48_21720 PF01609 Transposase DDE domain DYQ48_21720 PF05598 Transposase domain (DUF772) DYQ48_21740 PF04357 TamB, inner membrane protein subunit of TAM complex DYQ48_21745 PF17243 POTRA domain TamA domain 1 DYQ48_21745 PF01103 Surface antigen DYQ48_21750 PF05746 DALR anticodon binding domain DYQ48_21750 PF02092 Glycyl-tRNA synthetase beta subunit DYQ48_21755 PF02091 Glycyl-tRNA synthetase alpha subunit DYQ48_21760 PF00437 Type II/IV secretion system protein DYQ48_21760 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DYQ48_21775 PF00958 GMP synthase C terminal domain DYQ48_21775 PF00117 Glutamine amidotransferase class-I DYQ48_21785 PF00902 Sec-independent protein translocase protein (TatC) DYQ48_21790 PF02416 mttA/Hcf106 family DYQ48_21795 PF02416 mttA/Hcf106 family DYQ48_21805 PF00762 Ferrochelatase DYQ48_21810 PF12697 Alpha/beta hydrolase family DYQ48_21820 PF04381 Putative exonuclease, RdgC DYQ48_21825 PF01171 PP-loop family DYQ48_21840 PF00356 Bacterial regulatory proteins, lacI family DYQ48_21845 PF07488 Glycosyl hydrolase family 67 middle domain DYQ48_21845 PF07477 Glycosyl hydrolase family 67 C-terminus DYQ48_21845 PF03648 Glycosyl hydrolase family 67 N-terminus DYQ48_21855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYQ48_21855 PF13378 Enolase C-terminal domain-like DYQ48_21860 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DYQ48_21860 PF04616 Glycosyl hydrolases family 43 DYQ48_21865 PF01915 Glycosyl hydrolase family 3 C-terminal domain DYQ48_21865 PF00933 Glycosyl hydrolase family 3 N terminal domain DYQ48_21865 PF14310 Fibronectin type III-like domain DYQ48_21865 PF07691 PA14 domain DYQ48_21870 PF01232 Mannitol dehydrogenase Rossmann domain DYQ48_21870 PF08125 Mannitol dehydrogenase C-terminal domain DYQ48_21895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYQ48_21895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYQ48_21900 PF02652 L-lactate permease DYQ48_21910 PF08450 SMP-30/Gluconolactonase/LRE-like region DYQ48_21915 PF00331 Glycosyl hydrolase family 10 DYQ48_21920 PF02837 Glycosyl hydrolases family 2, sugar binding domain DYQ48_21920 PF00703 Glycosyl hydrolases family 2 DYQ48_21920 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DYQ48_21920 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DYQ48_21920 PF16355 Domain of unknown function (DUF4982) DYQ48_21925 PF02614 Glucuronate isomerase DYQ48_21930 PF00553 Cellulose binding domain DYQ48_21930 PF00331 Glycosyl hydrolase family 10 DYQ48_21930 PF03422 Carbohydrate binding module (family 6) DYQ48_21950 PF04616 Glycosyl hydrolases family 43 DYQ48_22005 PF00698 Acyl transferase domain DYQ48_22005 PF16197 Ketoacyl-synthetase C-terminal extension DYQ48_22005 PF14765 Polyketide synthase dehydratase DYQ48_22005 PF00550 Phosphopantetheine attachment site DYQ48_22005 PF08240 Alcohol dehydrogenase GroES-like domain DYQ48_22005 PF00109 Beta-ketoacyl synthase, N-terminal domain DYQ48_22005 PF00107 Zinc-binding dehydrogenase DYQ48_22005 PF02801 Beta-ketoacyl synthase, C-terminal domain DYQ48_22005 PF08659 KR domain DYQ48_22010 PF01553 Acyltransferase DYQ48_22020 PF00356 Bacterial regulatory proteins, lacI family DYQ48_22030 PF04820 Tryptophan halogenase DYQ48_22035 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYQ48_22040 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DYQ48_22045 PF04337 Protein of unknown function, DUF480 DYQ48_22060 PF13302 Acetyltransferase (GNAT) domain DYQ48_22065 PF13361 UvrD-like helicase C-terminal domain DYQ48_22065 PF00580 UvrD/REP helicase N-terminal domain DYQ48_22070 PF00265 Thymidine kinase DYQ48_22075 PF00360 Phytochrome region DYQ48_22075 PF08446 PAS fold DYQ48_22075 PF01590 GAF domain DYQ48_22075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYQ48_22075 PF00512 His Kinase A (phospho-acceptor) domain DYQ48_22080 PF04349 Periplasmic glucan biosynthesis protein, MdoG DYQ48_22090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DYQ48_22090 PF06827 Zinc finger found in FPG and IleRS DYQ48_22090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DYQ48_22120 PF03594 Benzoate membrane transport protein DYQ48_22125 PF00360 Phytochrome region DYQ48_22125 PF13426 PAS domain DYQ48_22125 PF08446 PAS fold DYQ48_22125 PF01590 GAF domain DYQ48_22130 PF01126 Heme oxygenase DYQ48_22135 PF07690 Major Facilitator Superfamily DYQ48_22140 PF01263 Aldose 1-epimerase DYQ48_22150 PF02810 SEC-C motif DYQ48_22155 PF01925 Sulfite exporter TauE/SafE DYQ48_22160 PF00593 TonB dependent receptor DYQ48_22160 PF07715 TonB-dependent Receptor Plug Domain DYQ48_22185 PF01227 GTP cyclohydrolase I DYQ48_22195 PF07869 Protein of unknown function (DUF1656) DYQ48_22200 PF00529 HlyD membrane-fusion protein of T1SS DYQ48_22200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYQ48_22205 PF02321 Outer membrane efflux protein DYQ48_22210 PF04632 Fusaric acid resistance protein family DYQ48_22215 PF00083 Sugar (and other) transporter DYQ48_22220 PF03466 LysR substrate binding domain DYQ48_22220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYQ48_22225 PF00106 short chain dehydrogenase DYQ48_22235 PF13396 Phospholipase_D-nuclease N-terminal DYQ48_22235 PF13091 PLD-like domain DYQ48_22265 PF13614 AAA domain DYQ48_22275 PF07804 HipA-like C-terminal domain DYQ48_22275 PF13657 HipA N-terminal domain DYQ48_22340 PF00849 RNA pseudouridylate synthase DYQ48_22365 PF12833 Helix-turn-helix domain DYQ48_22365 PF06719 AraC-type transcriptional regulator N-terminus DYQ48_22375 PF01381 Helix-turn-helix DYQ48_22380 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB DYQ48_22390 PF13538 UvrD-like helicase C-terminal domain DYQ48_22395 PF13361 UvrD-like helicase C-terminal domain DYQ48_22395 PF00580 UvrD/REP helicase N-terminal domain DYQ48_22395 PF12705 PD-(D/E)XK nuclease superfamily DYQ48_22400 PF17946 RecC C-terminal domain DYQ48_22405 PF00005 ABC transporter DYQ48_22410 PF02405 Permease MlaE DYQ48_22415 PF02470 MlaD protein DYQ48_22420 PF05494 MlaC protein DYQ48_22430 PF04333 MlaA lipoprotein DYQ48_22445 PF00732 GMC oxidoreductase DYQ48_22445 PF05199 GMC oxidoreductase DYQ48_22460 PF00255 Glutathione peroxidase DYQ48_22470 PF02646 RmuC family DYQ48_22475 PF00043 Glutathione S-transferase, C-terminal domain DYQ48_22475 PF13417 Glutathione S-transferase, N-terminal domain DYQ48_22480 PF13520 Amino acid permease DYQ48_22485 PF07971 Glycosyl hydrolase family 92 DYQ48_22485 PF17678 Glycosyl hydrolase family 92 N-terminal domain DYQ48_22500 PF00990 Diguanylate cyclase, GGDEF domain DYQ48_22505 PF05651 Putative sugar diacid recognition DYQ48_22505 PF13556 PucR C-terminal helix-turn-helix domain DYQ48_22505 PF17853 GGDEF-like domain DYQ48_22510 PF02595 Glycerate kinase family DYQ48_22515 PF07690 Major Facilitator Superfamily DYQ48_22530 PF01804 Penicillin amidase DYQ48_22535 PF07715 TonB-dependent Receptor Plug Domain DYQ48_22535 PF00593 TonB dependent receptor DYQ48_22555 PF00005 ABC transporter DYQ48_22565 PF07687 Peptidase dimerisation domain DYQ48_22565 PF01546 Peptidase family M20/M25/M40 DYQ48_22570 PF00296 Luciferase-like monooxygenase DYQ48_22575 PF00296 Luciferase-like monooxygenase DYQ48_22585 PF07715 TonB-dependent Receptor Plug Domain DYQ48_22585 PF00593 TonB dependent receptor DYQ48_22590 PF01965 DJ-1/PfpI family DYQ48_22605 PF10672 S-adenosylmethionine-dependent methyltransferase DYQ48_22605 PF17785 PUA-like domain DYQ48_22615 PF03741 Integral membrane protein TerC family DYQ48_22620 PF01694 Rhomboid family DYQ48_22625 PF03009 Glycerophosphoryl diester phosphodiesterase family DYQ48_22640 PF01569 PAP2 superfamily DYQ48_22645 PF12631 MnmE helical domain DYQ48_22645 PF01926 50S ribosome-binding GTPase DYQ48_22645 PF10396 GTP-binding protein TrmE N-terminus DYQ48_22650 PF14849 YidC periplasmic domain DYQ48_22650 PF02096 60Kd inner membrane protein DYQ48_22655 PF00825 Ribonuclease P DYQ48_22660 PF00468 Ribosomal protein L34 DYQ48_22670 PF08299 Bacterial dnaA protein helix-turn-helix DYQ48_22670 PF11638 DnaA N-terminal domain DYQ48_22670 PF00308 Bacterial dnaA protein DYQ48_22745 PF11740 Plasmid replication region DNA-binding N-term DYQ48_22760 PF06067 Domain of unknown function (DUF932) DYQ48_22785 PF18495 Antitoxin VbhA DYQ48_22790 PF17841 BID domain of Bartonella effector protein (Bep) DYQ48_22790 PF02661 Fic/DOC family DYQ48_22810 PF03230 Antirestriction protein DYQ48_22850 PF02796 Helix-turn-helix domain of resolvase DYQ48_22850 PF00239 Resolvase, N terminal domain DYQ48_22895 PF09722 Protein of unknown function (DUF2384) DYQ48_22895 PF01936 NYN domain DYQ48_22955 PF07516 SecA Wing and Scaffold domain DYQ48_22955 PF02810 SEC-C motif DYQ48_22955 PF01043 SecA preprotein cross-linking domain DYQ48_22955 PF07517 SecA DEAD-like domain DYQ48_22960 PF03377 TAL effector repeat DYQ48_22995 PF09722 Protein of unknown function (DUF2384) DYQ48_22995 PF01936 NYN domain