locus-tag	class	description
DYQ48_00015	COG0187	DNA topoisomerase II activity
DYQ48_00025	COG0501	Belongs to the peptidase M48B family
DYQ48_00060	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DYQ48_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYQ48_00100	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DYQ48_00105	COG0793	Belongs to the peptidase S41A family
DYQ48_00110	COG4942	peptidase
DYQ48_00120	COG2234	aminopeptidase activity
DYQ48_00130	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DYQ48_00135	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DYQ48_00140	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DYQ48_00145	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DYQ48_00150	COG1064	alcohol dehydrogenase
DYQ48_00160	COG0493	'glutamate synthase
DYQ48_00165	COG0067	glutamate synthase
DYQ48_00165	COG0069	glutamate synthase activity
DYQ48_00165	COG0070	glutamate synthase
DYQ48_00200	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DYQ48_00215	COG3459	Glycosyltransferase 36 associated
DYQ48_00240	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_00325	COG1205	dead DEAH box helicase
DYQ48_00325	COG1111	helicase
DYQ48_00335	COG1272	protein, Hemolysin III
DYQ48_00360	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_00380	COG0583	DNA-binding transcription factor activity
DYQ48_00385	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_00400	COG2249	NAD(P)H dehydrogenase (quinone) activity
DYQ48_00415	COG1733	regulation of RNA biosynthetic process
DYQ48_00460	COG3237	CsbD-like
DYQ48_00500	COG2816	NAD+ diphosphatase activity
DYQ48_00515	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ48_00560	COG0714	Associated with various cellular activities
DYQ48_00615	COG4772	TonB-dependent receptor
DYQ48_00625	COG0662	Cupin 2, conserved barrel domain protein
DYQ48_00635	COG1012	belongs to the aldehyde dehydrogenase family
DYQ48_00690	COG1755	Isoprenylcysteine carboxyl methyltransferase
DYQ48_00695	COG4585	Histidine kinase
DYQ48_00700	COG2197	response regulator
DYQ48_00715	COG3710	Transcriptional regulator
DYQ48_00720	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DYQ48_00730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DYQ48_00735	COG4771	TonB-dependent receptor
DYQ48_00850	COG3039	Transposase
DYQ48_00885	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DYQ48_00910	COG0366	Alpha amylase catalytic
DYQ48_00915	COG0366	Alpha amylase catalytic
DYQ48_00920	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DYQ48_00950	COG2755	lipolytic protein G-D-S-L family
DYQ48_00960	COG2755	lipolytic protein G-D-S-L family
DYQ48_00960	COG0657	acetylesterase activity
DYQ48_00970	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DYQ48_00985	COG3507	Belongs to the glycosyl hydrolase 43 family
DYQ48_00990	COG1609	Transcriptional regulator
DYQ48_01000	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
DYQ48_01005	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_01015	COG2755	lipolytic protein G-D-S-L family
DYQ48_01035	COG3186	Phenylalanine-4-hydroxylase
DYQ48_01040	COG1522	sequence-specific DNA binding
DYQ48_01050	COG1752	Esterase of the alpha-beta hydrolase superfamily
DYQ48_01060	COG1119	ATPase activity
DYQ48_01075	COG1125	glycine betaine transport
DYQ48_01075	COG0517	IMP dehydrogenase activity
DYQ48_01090	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DYQ48_01100	COG3550	peptidyl-serine autophosphorylation
DYQ48_01105	COG1396	sequence-specific DNA binding
DYQ48_01140	COG0489	protein tyrosine kinase activity
DYQ48_01145	COG2062	phosphohistidine phosphatase, SixA
DYQ48_01155	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYQ48_01185	COG1881	PFAM PEBP family protein
DYQ48_01200	COG0174	glutamine synthetase
DYQ48_01205	COG0347	Belongs to the P(II) protein family
DYQ48_01210	COG0004	ammonium transporteR
DYQ48_01215	COG3852	Histidine kinase
DYQ48_01220	COG2204	response regulator
DYQ48_01225	COG2032	superoxide dismutase activity
DYQ48_01230	COG2032	superoxide dismutase activity
DYQ48_01240	COG0183	Belongs to the thiolase family
DYQ48_01285	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DYQ48_01295	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DYQ48_01305	COG0028	Belongs to the TPP enzyme family
DYQ48_01335	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DYQ48_01350	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DYQ48_01355	COG3177	Filamentation induced by cAMP protein fic
DYQ48_01360	COG0596	Alpha beta hydrolase
DYQ48_01370	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ48_01385	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DYQ48_01400	COG1181	Belongs to the D-alanine--D-alanine ligase family
DYQ48_01415	COG0564	pseudouridine synthase activity
DYQ48_01435	COG1446	asparaginase
DYQ48_01440	COG0339	signal peptide processing
DYQ48_01460	COG0583	DNA-binding transcription factor activity
DYQ48_01465	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DYQ48_01470	COG2224	Isocitrate lyase
DYQ48_01475	COG5001	Diguanylate cyclase
DYQ48_01505	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DYQ48_01510	COG1960	acyl-CoA dehydrogenase activity
DYQ48_01565	COG0523	cobalamin synthesis protein
DYQ48_01580	COG0697	spore germination
DYQ48_01590	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DYQ48_01605	COG1846	Transcriptional regulator
DYQ48_01610	COG1764	response to oxidative stress
DYQ48_01635	COG0656	L-ascorbic acid biosynthetic process
DYQ48_01640	COG2130	NADP-dependent
DYQ48_01655	COG1187	pseudouridine synthase activity
DYQ48_01670	COG1643	Atp-dependent helicase
DYQ48_01675	COG0840	transmembrane signaling receptor activity
DYQ48_01685	COG4807	Protein conserved in bacteria
DYQ48_01690	COG2351	hydroxyisourate hydrolase activity
DYQ48_01695	COG2072	flavoprotein involved in K transport
DYQ48_01715	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DYQ48_01740	COG0596	Alpha beta hydrolase
DYQ48_01815	COG2252	PERMEase
DYQ48_01835	COG0084	hydrolase, TatD family'
DYQ48_01850	COG0583	DNA-binding transcription factor activity
DYQ48_01855	COG2814	Major facilitator Superfamily
DYQ48_01880	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DYQ48_01885	COG1902	pentaerythritol trinitrate reductase activity
DYQ48_01920	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DYQ48_01925	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DYQ48_01930	COG0583	DNA-binding transcription factor activity
DYQ48_01945	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DYQ48_01960	COG0702	epimerase
DYQ48_01965	COG1733	regulation of RNA biosynthetic process
DYQ48_02070	COG0129	dihydroxy-acid dehydratase activity
DYQ48_02080	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DYQ48_02140	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DYQ48_02170	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DYQ48_02175	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DYQ48_02185	COG3485	protocatechuate 3,4-dioxygenase
DYQ48_02200	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DYQ48_02205	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DYQ48_02220	COG1414	Transcriptional regulator
DYQ48_02240	COG0445	tRNA wobble uridine modification
DYQ48_02250	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DYQ48_02290	COG0156	8-amino-7-oxononanoate synthase activity
DYQ48_02295	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
DYQ48_02300	COG1040	competence protein
DYQ48_02340	COG3590	peptidase
DYQ48_02360	COG3264	Mechanosensitive ion channel
DYQ48_02360	COG1511	domain protein
DYQ48_02370	COG1368	sulfuric ester hydrolase activity
DYQ48_02380	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DYQ48_02385	COG2354	Protein conserved in bacteria
DYQ48_02395	COG3706	GGDEF domain
DYQ48_02400	COG0297	glycogen (starch) synthase activity
DYQ48_02405	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DYQ48_02410	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DYQ48_02435	COG0702	epimerase
DYQ48_02440	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_02480	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYQ48_02490	COG0513	Belongs to the DEAD box helicase family
DYQ48_02500	COG0508	dehydrogenase complex catalyzes the overall conversion of
DYQ48_02515	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DYQ48_02530	COG3104	oligopeptide transport
DYQ48_02550	COG2852	Protein conserved in bacteria
DYQ48_02570	COG1320	monovalent cation:proton antiporter activity
DYQ48_02575	COG2212	antiporter activity
DYQ48_02585	COG0651	ATP synthesis coupled electron transport
DYQ48_02590	COG1006	Multisubunit Na H antiporter MnhC subunit
DYQ48_02595	COG2111	Na H antiporter
DYQ48_02595	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DYQ48_02660	COG1597	lipid kinase activity
DYQ48_02680	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
DYQ48_02710	COG2267	carboxylic ester hydrolase activity
DYQ48_02790	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DYQ48_02860	COG0840	transmembrane signaling receptor activity
DYQ48_02875	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DYQ48_02880	COG0134	indole-3-glycerol-phosphate synthase activity
DYQ48_02890	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ48_02900	COG2076	Multidrug Resistance protein
DYQ48_02910	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DYQ48_02970	COG0316	Belongs to the HesB IscA family
DYQ48_02980	COG2816	NAD+ diphosphatase activity
DYQ48_02985	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
DYQ48_03010	COG2814	Major facilitator Superfamily
DYQ48_03015	COG1289	transmembrane transporter activity
DYQ48_03020	COG0151	Belongs to the GarS family
DYQ48_03025	COG0138	bifunctional purine biosynthesis protein purh
DYQ48_03035	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
DYQ48_03060	COG2264	protein methyltransferase activity
DYQ48_03075	COG0439	Biotin carboxylase
DYQ48_03085	COG0511	ligase activity, forming carbon-carbon bonds
DYQ48_03090	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DYQ48_03105	COG1324	tolerance protein
DYQ48_03110	COG2356	endonuclease I
DYQ48_03115	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DYQ48_03150	COG3550	peptidyl-serine autophosphorylation
DYQ48_03155	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DYQ48_03180	COG3712	iron ion homeostasis
DYQ48_03205	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
DYQ48_03210	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DYQ48_03230	COG0778	Nitroreductase
DYQ48_03235	COG2353	YceI-like domain
DYQ48_03255	COG3052	prosthetic group binding
DYQ48_03275	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
DYQ48_03290	COG1802	Transcriptional regulator
DYQ48_03390	COG0210	DNA helicase
DYQ48_03515	COG4206	TonB-dependent receptor
DYQ48_03560	COG0435	Glutathione S-transferase
DYQ48_03595	COG1506	peptidase
DYQ48_03595	COG0823	Involved in the tonB-independent uptake of proteins
DYQ48_03605	COG3706	GGDEF domain
DYQ48_03630	COG0697	spore germination
DYQ48_03650	COG1113	amino acid transport
DYQ48_03655	COG0598	Magnesium transport protein CorA
DYQ48_03670	COG3507	Belongs to the glycosyl hydrolase 43 family
DYQ48_03735	COG0840	transmembrane signaling receptor activity
DYQ48_03740	COG5297	Belongs to the glycosyl hydrolase family 6
DYQ48_03740	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DYQ48_03745	COG0659	secondary active sulfate transmembrane transporter activity
DYQ48_03750	COG3706	GGDEF domain
DYQ48_03780	COG3275	phosphorelay sensor kinase activity
DYQ48_03790	COG0181	hydroxymethylbilane synthase activity
DYQ48_03815	COG1505	serine-type exopeptidase activity
DYQ48_03845	COG2832	Protein of unknown function (DUF454)
DYQ48_03855	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DYQ48_03865	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DYQ48_03870	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DYQ48_03875	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DYQ48_03880	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DYQ48_03910	COG2226	methyltransferase
DYQ48_03915	COG3300	MHYT domain
DYQ48_03915	COG5001	Diguanylate cyclase
DYQ48_03920	COG0308	aminopeptidase N
DYQ48_03960	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DYQ48_03975	COG3284	Transcriptional regulator
DYQ48_03985	COG1077	Cell shape determining protein MreB Mrl
DYQ48_03990	COG1792	Involved in formation and maintenance of cell shape
DYQ48_03995	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DYQ48_04005	COG0772	Belongs to the SEDS family
DYQ48_04020	COG2951	lytic endotransglycosylase activity
DYQ48_04025	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DYQ48_04030	COG1686	Belongs to the peptidase S11 family
DYQ48_04040	COG2921	Belongs to the UPF0250 family
DYQ48_04045	COG0321	lipoyl(octanoyl) transferase activity
DYQ48_04050	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DYQ48_04065	COG1056	cytidyltransferase-related domain
DYQ48_04065	COG1051	belongs to the nudix hydrolase family
DYQ48_04100	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
DYQ48_04105	COG0673	inositol 2-dehydrogenase activity
DYQ48_04110	COG2823	Periplasmic or secreted lipoprotein
DYQ48_04115	COG4251	negative regulation of phosphorylation
DYQ48_04120	COG0784	Response regulator, receiver
DYQ48_04125	COG4191	Histidine kinase
DYQ48_04130	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DYQ48_04135	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_04185	COG1459	type II secretion system
DYQ48_04210	COG3156	type II secretion system protein K
DYQ48_04235	COG3250	beta-galactosidase activity
DYQ48_04260	COG1609	Transcriptional regulator
DYQ48_04265	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DYQ48_04270	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DYQ48_04305	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DYQ48_04315	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DYQ48_04325	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DYQ48_04340	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DYQ48_04350	COG2205	protein histidine kinase activity
DYQ48_04355	COG0745	RESPONSE REGULATOR receiver
DYQ48_04370	COG3920	Histidine kinase
DYQ48_04385	COG3791	Glutathione-dependent formaldehyde-activating
DYQ48_04395	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYQ48_04445	COG0402	S-adenosylhomocysteine deaminase activity
DYQ48_04465	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DYQ48_04470	COG0726	polysaccharide deacetylase
DYQ48_04475	COG4773	Receptor
DYQ48_04530	COG3039	Transposase
DYQ48_04575	COG2211	Major facilitator Superfamily
DYQ48_04580	COG1609	Transcriptional regulator
DYQ48_04585	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_04590	COG2851	Citrate transporter
DYQ48_04605	COG0642	Histidine kinase
DYQ48_04610	COG1840	ABC-type Fe3 transport system, periplasmic component
DYQ48_04615	COG2197	response regulator
DYQ48_04630	COG4191	Histidine kinase
DYQ48_04645	COG0280	phosphate acetyltransferase
DYQ48_04645	COG0281	malic enzyme
DYQ48_04670	COG1560	Kdo2-lipid A biosynthetic process
DYQ48_04675	COG1519	Transferase
DYQ48_04685	COG1538	Outer membrane efflux protein
DYQ48_04690	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DYQ48_04710	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DYQ48_04715	COG0066	3-isopropylmalate dehydratase activity
DYQ48_04720	COG2226	methyltransferase
DYQ48_04725	COG0473	3-isopropylmalate dehydrogenase activity
DYQ48_04735	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DYQ48_04760	COG0405	Gamma-glutamyltransferase
DYQ48_04770	COG4946	Tricorn protease homolog
DYQ48_04770	COG1506	peptidase
DYQ48_04770	COG0823	Involved in the tonB-independent uptake of proteins
DYQ48_04785	COG3710	Transcriptional regulator
DYQ48_04805	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DYQ48_04815	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
DYQ48_04835	COG0563	adenylate kinase activity
DYQ48_04840	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DYQ48_04850	COG3781	membrane
DYQ48_04860	COG0671	phosphoesterase, PA-phosphatase related
DYQ48_04870	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_04885	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ48_04890	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DYQ48_04920	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ48_04925	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
DYQ48_04935	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DYQ48_04950	COG0352	thiamine-phosphate diphosphorylase activity
DYQ48_04955	COG1773	rubredoxin
DYQ48_04960	COG2912	Transglutaminase-like superfamily
DYQ48_04980	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DYQ48_05005	COG0006	proline dipeptidase activity
DYQ48_05010	COG0006	proline dipeptidase activity
DYQ48_05025	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DYQ48_05030	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DYQ48_05035	COG0346	lactoylglutathione lyase activity
DYQ48_05040	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
DYQ48_05045	COG1561	YicC-like family, N-terminal region
DYQ48_05055	COG1758	RNA polymerase activity
DYQ48_05060	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DYQ48_05070	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DYQ48_05095	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DYQ48_05125	COG0714	Associated with various cellular activities
DYQ48_05160	COG1301	dicarboxylic acid transport
DYQ48_05175	COG4773	Receptor
DYQ48_05180	COG0583	DNA-binding transcription factor activity
DYQ48_05185	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_05200	COG1376	ErfK ybiS ycfS ynhG family protein
DYQ48_05220	COG3682	Transcriptional regulator
DYQ48_05235	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
DYQ48_05240	COG4149	molybdate abc transporter
DYQ48_05245	COG0725	ABC transporter, periplasmic molybdate-binding protein
DYQ48_05250	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYQ48_05250	COG3453	Protein conserved in bacteria
DYQ48_05260	COG3047	cAMP biosynthetic process
DYQ48_05275	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DYQ48_05300	COG0126	phosphoglycerate kinase activity
DYQ48_05310	COG0469	pyruvate kinase activity
DYQ48_05320	COG3588	fructose-bisphosphate aldolase
DYQ48_05325	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DYQ48_05365	COG2205	protein histidine kinase activity
DYQ48_05365	COG0784	Response regulator, receiver
DYQ48_05365	COG2198	Histidine kinase
DYQ48_05390	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYQ48_05405	COG2895	sulfate adenylyltransferase (ATP) activity
DYQ48_05405	COG0529	Catalyzes the synthesis of activated sulfate
DYQ48_05410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYQ48_05415	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYQ48_05435	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DYQ48_05440	COG2272	Belongs to the type-B carboxylesterase lipase family
DYQ48_05450	COG4948	Mandelate Racemase Muconate Lactonizing
DYQ48_05455	COG3250	beta-galactosidase activity
DYQ48_05465	COG1609	Transcriptional regulator
DYQ48_05495	COG0471	metal ion transport
DYQ48_05495	COG3273	potassium ion transport
DYQ48_05500	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DYQ48_05560	COG2003	Belongs to the UPF0758 family
DYQ48_05730	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DYQ48_05775	COG1238	metal cluster binding
DYQ48_05780	COG0840	transmembrane signaling receptor activity
DYQ48_05815	COG0189	ligase activity
DYQ48_05820	COG0745	RESPONSE REGULATOR receiver
DYQ48_05855	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DYQ48_05860	COG1459	type II secretion system
DYQ48_05870	COG4969	Belongs to the N-Me-Phe pilin family
DYQ48_05890	COG0045	succinate-CoA ligase (ADP-forming) activity
DYQ48_05895	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DYQ48_05925	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DYQ48_05925	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DYQ48_05935	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ48_05940	COG0564	pseudouridine synthase activity
DYQ48_05955	COG3011	Protein conserved in bacteria
DYQ48_05960	COG0840	transmembrane signaling receptor activity
DYQ48_05975	COG3387	PFAM Glycoside hydrolase 15-related
DYQ48_05980	COG1877	trehalose-phosphatase activity
DYQ48_06040	COG4771	TonB-dependent receptor
DYQ48_06050	COG0667	Aldo Keto reductase
DYQ48_06055	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DYQ48_06060	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ48_06065	COG1116	anion transmembrane transporter activity
DYQ48_06070	COG0542	response to heat
DYQ48_06080	COG4206	TonB-dependent receptor
DYQ48_06095	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DYQ48_06110	COG0019	diaminopimelate decarboxylase activity
DYQ48_06115	COG4264	IucA IucC family
DYQ48_06125	COG4264	IucA IucC family
DYQ48_06135	COG4772	TonB-dependent receptor
DYQ48_06145	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DYQ48_06145	COG4651	solute:proton antiporter activity
DYQ48_06170	COG0488	(ABC) transporter
DYQ48_06210	COG0477	Major facilitator Superfamily
DYQ48_06230	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DYQ48_06280	COG0824	Thioesterase
DYQ48_06290	COG0848	biopolymer transport protein
DYQ48_06305	COG2885	chlorophyll binding
DYQ48_06315	COG0602	queuosine metabolic process
DYQ48_06320	COG0667	Aldo Keto reductase
DYQ48_06380	COG4983	Phage plasmid primase, P4 family domain protein
DYQ48_06395	COG0582	viral genome integration into host DNA
DYQ48_06410	COG3920	Histidine kinase
DYQ48_06445	COG1187	pseudouridine synthase activity
DYQ48_06465	COG0514	ATP-dependent DNA helicase (RecQ)
DYQ48_06470	COG0783	Belongs to the Dps family
DYQ48_06475	COG1643	Atp-dependent helicase
DYQ48_06485	COG0837	glucose binding
DYQ48_06505	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
DYQ48_06510	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DYQ48_06520	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DYQ48_06535	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DYQ48_06545	COG1199	ATP-dependent helicase activity
DYQ48_06560	COG0189	ligase activity
DYQ48_06575	COG0835	chemotaxis
DYQ48_06580	COG0840	transmembrane signaling receptor activity
DYQ48_06590	COG2201	protein-glutamate methylesterase activity
DYQ48_06620	COG1595	DNA-templated transcription, initiation
DYQ48_06625	COG2304	oxidoreductase activity
DYQ48_06635	COG1446	asparaginase
DYQ48_06640	COG3142	Participates in the control of copper homeostasis
DYQ48_06690	COG3537	Alpha-1,2-mannosidase
DYQ48_06700	COG1486	melibiose metabolic process
DYQ48_06710	COG0531	amino acid
DYQ48_06735	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ48_06760	COG3858	chitin binding
DYQ48_06760	COG1388	LysM domain
DYQ48_06775	COG0837	glucose binding
DYQ48_06780	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DYQ48_06790	COG0494	nUDIX hydrolase
DYQ48_06795	COG1218	3'(2'),5'-bisphosphate nucleotidase
DYQ48_06800	COG3956	TIGRFAM MazG family protein
DYQ48_06805	COG1742	UPF0060 membrane protein
DYQ48_06810	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DYQ48_06815	COG0509	glycine decarboxylation via glycine cleavage system
DYQ48_06840	COG3039	Transposase
DYQ48_06850	COG1960	acyl-CoA dehydrogenase activity
DYQ48_06855	COG2267	carboxylic ester hydrolase activity
DYQ48_06860	COG1309	transcriptional regulator
DYQ48_06875	COG2205	protein histidine kinase activity
DYQ48_06880	COG1104	cysteine desulfurase activity
DYQ48_06910	COG3039	Transposase
DYQ48_06940	COG4206	TonB-dependent receptor
DYQ48_06950	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DYQ48_06955	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DYQ48_06960	COG0463	Glycosyl transferase, family 2
DYQ48_06965	COG0516	GMP reductase activity
DYQ48_06965	COG0517	IMP dehydrogenase activity
DYQ48_06970	COG2982	Protein involved in outer membrane biogenesis
DYQ48_06975	COG1272	protein, Hemolysin III
DYQ48_06980	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DYQ48_06990	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DYQ48_06995	COG0626	cystathionine gamma-synthase activity
DYQ48_07000	COG0527	aspartate kinase activity
DYQ48_07000	COG0460	homoserine dehydrogenase
DYQ48_07010	COG1760	l-serine dehydratase
DYQ48_07025	COG1278	Cold shock
DYQ48_07035	COG3038	cytochrome b561
DYQ48_07040	COG2353	YceI-like domain
DYQ48_07045	COG2205	protein histidine kinase activity
DYQ48_07045	COG0784	Response regulator, receiver
DYQ48_07045	COG2198	Histidine kinase
DYQ48_07050	COG0784	Response regulator, receiver
DYQ48_07050	COG2198	Histidine kinase
DYQ48_07050	COG2205	protein histidine kinase activity
DYQ48_07065	COG0477	Major facilitator Superfamily
DYQ48_07075	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
DYQ48_07085	COG2986	histidine ammonia-lyase
DYQ48_07090	COG1228	amidohydrolase
DYQ48_07125	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
DYQ48_07130	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DYQ48_07135	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
DYQ48_07145	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DYQ48_07160	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DYQ48_07165	COG0583	DNA-binding transcription factor activity
DYQ48_07220	COG0840	transmembrane signaling receptor activity
DYQ48_07240	COG0784	Response regulator, receiver
DYQ48_07240	COG5002	protein histidine kinase activity
DYQ48_07240	COG2205	protein histidine kinase activity
DYQ48_07245	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
DYQ48_07250	COG0784	Response regulator, receiver
DYQ48_07250	COG4191	Histidine kinase
DYQ48_07265	COG3039	Transposase
DYQ48_07270	COG2879	small protein
DYQ48_07275	COG1966	Carbon starvation protein
DYQ48_07280	COG1741	Belongs to the pirin family
DYQ48_07295	COG1741	Belongs to the pirin family
DYQ48_07300	COG1515	deoxyribonuclease V activity
DYQ48_07315	COG3590	peptidase
DYQ48_07320	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYQ48_07330	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DYQ48_07340	COG0835	chemotaxis
DYQ48_07345	COG0840	transmembrane signaling receptor activity
DYQ48_07350	COG0643	Histidine kinase
DYQ48_07350	COG2198	Histidine kinase
DYQ48_07360	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DYQ48_07375	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DYQ48_07380	COG0745	RESPONSE REGULATOR receiver
DYQ48_07385	COG2205	protein histidine kinase activity
DYQ48_07395	COG4452	Inner membrane protein CreD
DYQ48_07420	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DYQ48_07425	COG0735	belongs to the Fur family
DYQ48_07445	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYQ48_07450	COG1538	Outer membrane efflux protein
DYQ48_07455	COG1309	transcriptional regulator
DYQ48_07460	COG0667	Aldo Keto reductase
DYQ48_07485	COG0583	DNA-binding transcription factor activity
DYQ48_07490	COG2814	Major facilitator Superfamily
DYQ48_07495	COG0667	Aldo Keto reductase
DYQ48_07500	COG1404	Belongs to the peptidase S8 family
DYQ48_07510	COG1404	Belongs to the peptidase S8 family
DYQ48_07585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYQ48_07605	COG1595	DNA-templated transcription, initiation
DYQ48_07615	COG5002	protein histidine kinase activity
DYQ48_07615	COG5001	Diguanylate cyclase
DYQ48_07620	COG1187	pseudouridine synthase activity
DYQ48_07625	COG3706	GGDEF domain
DYQ48_07625	COG0745	RESPONSE REGULATOR receiver
DYQ48_07640	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DYQ48_07645	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DYQ48_07650	COG0475	glutathione-regulated potassium exporter activity
DYQ48_07660	COG1132	(ABC) transporter
DYQ48_07705	COG2155	Conserved Protein
DYQ48_07715	COG0583	DNA-binding transcription factor activity
DYQ48_07730	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYQ48_07750	COG3706	GGDEF domain
DYQ48_07760	COG3706	GGDEF domain
DYQ48_07815	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DYQ48_07830	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ48_07840	COG0497	DNA recombination
DYQ48_07845	COG1420	regulation of RNA biosynthetic process
DYQ48_07850	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DYQ48_07865	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
DYQ48_07890	COG2274	protein secretion by the type I secretion system
DYQ48_07895	COG0583	DNA-binding transcription factor activity
DYQ48_07900	COG1132	(ABC) transporter
DYQ48_07935	COG2850	peptidyl-arginine hydroxylation
DYQ48_07955	COG1253	flavin adenine dinucleotide binding
DYQ48_07985	COG1131	(ABC) transporter
DYQ48_07990	COG1725	Transcriptional regulator
DYQ48_08000	COG0386	Belongs to the glutathione peroxidase family
DYQ48_08040	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DYQ48_08050	COG1410	methionine synthase
DYQ48_08050	COG0646	methionine synthase
DYQ48_08065	COG1960	acyl-CoA dehydrogenase activity
DYQ48_08080	COG0557	exoribonuclease II activity
DYQ48_08090	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DYQ48_08095	COG3706	GGDEF domain
DYQ48_08110	COG0704	Plays a role in the regulation of phosphate uptake
DYQ48_08115	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DYQ48_08120	COG0581	inorganic phosphate transmembrane transporter activity
DYQ48_08125	COG0573	inorganic phosphate transmembrane transporter activity
DYQ48_08130	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DYQ48_08155	COG0659	secondary active sulfate transmembrane transporter activity
DYQ48_08165	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DYQ48_08175	COG1024	Enoyl-CoA hydratase
DYQ48_08235	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DYQ48_08260	COG2925	Exonuclease
DYQ48_08265	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYQ48_08285	COG0288	reversible hydration of carbon dioxide
DYQ48_08290	COG2808	Putative FMN-binding domain
DYQ48_08305	COG0017	Asparaginyl-tRNA synthetase
DYQ48_08310	COG0316	Belongs to the HesB IscA family
DYQ48_08335	COG3115	cell septum assembly
DYQ48_08340	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ48_08345	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DYQ48_08350	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
DYQ48_08360	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
DYQ48_08395	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYQ48_08400	COG3178	'Phosphotransferase
DYQ48_08410	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DYQ48_08415	COG1555	photosystem II stabilization
DYQ48_08425	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
DYQ48_08430	COG1477	protein flavinylation
DYQ48_08455	COG3128	pkhd-type hydroxylase
DYQ48_08460	COG4774	siderophore transport
DYQ48_08475	COG0456	acetyltransferase
DYQ48_08480	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DYQ48_08485	COG0719	Fe-S assembly protein
DYQ48_08490	COG0396	ATPase activity
DYQ48_08495	COG0719	Fe-S assembly protein
DYQ48_08500	COG1959	2 iron, 2 sulfur cluster binding
DYQ48_08525	COG4942	peptidase
DYQ48_08540	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DYQ48_08565	COG0519	Catalyzes the synthesis of GMP from XMP
DYQ48_08575	COG1678	Uncharacterized ACR, COG1678
DYQ48_08580	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DYQ48_08590	COG1764	response to oxidative stress
DYQ48_08600	COG0384	phenazine biosynthesis protein PhzF
DYQ48_08605	COG0384	phenazine biosynthesis protein PhzF
DYQ48_08610	COG0527	aspartate kinase activity
DYQ48_08630	COG0142	geranyltranstransferase activity
DYQ48_08635	COG0629	single-stranded DNA binding
DYQ48_08650	COG4251	negative regulation of phosphorylation
DYQ48_08650	COG3706	GGDEF domain
DYQ48_08650	COG2203	Gaf domain
DYQ48_08650	COG5001	Diguanylate cyclase
DYQ48_08655	COG2080	2 iron, 2 sulfur cluster binding
DYQ48_08660	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
DYQ48_08665	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DYQ48_08670	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DYQ48_08700	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DYQ48_08735	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ48_08745	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
DYQ48_08755	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DYQ48_08805	COG2244	polysaccharide biosynthetic process
DYQ48_08835	COG2264	protein methyltransferase activity
DYQ48_08840	COG0297	glycogen (starch) synthase activity
DYQ48_08845	COG0438	transferase activity, transferring glycosyl groups
DYQ48_08865	COG1132	(ABC) transporter
DYQ48_08870	COG0477	Major facilitator Superfamily
DYQ48_08880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYQ48_08895	COG1253	flavin adenine dinucleotide binding
DYQ48_08935	COG0504	CTP synthase activity
DYQ48_08950	COG0148	phosphopyruvate hydratase activity
DYQ48_08975	COG2840	Smr protein MutS2
DYQ48_08980	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DYQ48_08985	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DYQ48_08990	COG1238	metal cluster binding
DYQ48_09005	COG1534	Rna-binding protein
DYQ48_09010	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DYQ48_09015	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DYQ48_09020	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DYQ48_09025	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DYQ48_09030	COG1923	regulation of RNA biosynthetic process
DYQ48_09035	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DYQ48_09040	COG1546	Belongs to the CinA family
DYQ48_09045	COG4771	TonB-dependent receptor
DYQ48_09050	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DYQ48_09065	COG2137	regulation of response to DNA damage stimulus
DYQ48_09070	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DYQ48_09075	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DYQ48_09090	COG1741	Belongs to the pirin family
DYQ48_09115	COG0352	thiamine-phosphate diphosphorylase activity
DYQ48_09115	COG0351	phosphomethylpyrimidine kinase
DYQ48_09130	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
DYQ48_09135	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DYQ48_09150	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DYQ48_09160	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DYQ48_09180	COG0800	Aldolase
DYQ48_09215	COG1501	Belongs to the glycosyl hydrolase 31 family
DYQ48_09225	COG1070	Carbohydrate kinase
DYQ48_09230	COG2115	Belongs to the xylose isomerase family
DYQ48_09235	COG0477	Major facilitator Superfamily
DYQ48_09255	COG0860	N-Acetylmuramoyl-L-alanine amidase
DYQ48_09275	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DYQ48_09280	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DYQ48_09285	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DYQ48_09290	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
DYQ48_09325	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ48_09340	COG3706	GGDEF domain
DYQ48_09340	COG4251	negative regulation of phosphorylation
DYQ48_09340	COG5001	Diguanylate cyclase
DYQ48_09340	COG2203	Gaf domain
DYQ48_09345	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
DYQ48_09355	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
DYQ48_09365	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DYQ48_09370	COG0671	phosphoesterase, PA-phosphatase related
DYQ48_09385	COG0697	spore germination
DYQ48_09390	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DYQ48_09395	COG0167	dihydroorotate dehydrogenase activity
DYQ48_09410	COG1012	belongs to the aldehyde dehydrogenase family
DYQ48_09455	COG1215	transferase activity, transferring glycosyl groups
DYQ48_09460	COG1649	PFAM Uncharacterised BCR, COG1649
DYQ48_09460	COG0726	polysaccharide deacetylase
DYQ48_09490	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
DYQ48_09495	COG0460	homoserine dehydrogenase
DYQ48_09495	COG0527	aspartate kinase activity
DYQ48_09520	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ48_09545	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DYQ48_09550	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DYQ48_09570	COG0107	imidazoleglycerol-phosphate synthase activity
DYQ48_09575	COG0140	phosphoribosyl-ATP diphosphatase activity
DYQ48_09575	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DYQ48_09595	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
DYQ48_09615	COG0531	amino acid
DYQ48_09620	COG0531	amino acid
DYQ48_09635	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DYQ48_09640	COG0277	FAD linked oxidase domain protein
DYQ48_09660	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DYQ48_09675	COG1024	Enoyl-CoA hydratase
DYQ48_09695	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DYQ48_09700	COG2258	MOSC domain
DYQ48_09710	COG0505	Belongs to the CarA family
DYQ48_09720	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DYQ48_09725	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DYQ48_09735	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DYQ48_09760	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DYQ48_09775	COG2205	protein histidine kinase activity
DYQ48_09775	COG2198	Histidine kinase
DYQ48_09775	COG0784	Response regulator, receiver
DYQ48_09785	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ48_09815	COG2267	carboxylic ester hydrolase activity
DYQ48_09835	COG2201	protein-glutamate methylesterase activity
DYQ48_09850	COG0840	transmembrane signaling receptor activity
DYQ48_09860	COG0835	chemotaxis
DYQ48_09875	COG0840	transmembrane signaling receptor activity
DYQ48_09880	COG0840	transmembrane signaling receptor activity
DYQ48_09885	COG0840	transmembrane signaling receptor activity
DYQ48_09890	COG0840	transmembrane signaling receptor activity
DYQ48_09895	COG0840	transmembrane signaling receptor activity
DYQ48_09900	COG0840	transmembrane signaling receptor activity
DYQ48_09905	COG0840	transmembrane signaling receptor activity
DYQ48_09910	COG0840	transmembrane signaling receptor activity
DYQ48_09930	COG0840	transmembrane signaling receptor activity
DYQ48_09940	COG2198	Histidine kinase
DYQ48_09940	COG0643	Histidine kinase
DYQ48_09945	COG0745	RESPONSE REGULATOR receiver
DYQ48_09955	COG0835	chemotaxis
DYQ48_09960	COG1192	Involved in chromosome partitioning
DYQ48_09970	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DYQ48_09985	COG0643	Histidine kinase
DYQ48_09985	COG2198	Histidine kinase
DYQ48_10005	COG0455	bacterial-type flagellum organization
DYQ48_10040	COG3300	MHYT domain
DYQ48_10040	COG5001	Diguanylate cyclase
DYQ48_10050	COG1987	bacterial-type flagellum assembly
DYQ48_10060	COG3190	flagellar
DYQ48_10110	COG1677	Flagellar hook-basal body complex protein FliE
DYQ48_10115	COG3039	Transposase
DYQ48_10165	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_10170	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_10175	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DYQ48_10195	COG2201	protein-glutamate methylesterase activity
DYQ48_10225	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
DYQ48_10230	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DYQ48_10245	COG3951	Flagellar rod assembly protein muramidase FlgJ
DYQ48_10245	COG1705	Flagellar rod assembly protein muramidase FlgJ
DYQ48_10260	COG4786	Flagellar basal body rod
DYQ48_10265	COG4787	bacterial-type flagellum-dependent cell motility
DYQ48_10270	COG1749	Flagellar hook protein flgE
DYQ48_10275	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DYQ48_10280	COG1558	bacterial-type flagellum-dependent cell motility
DYQ48_10290	COG0835	chemotaxis
DYQ48_10290	COG0784	Response regulator, receiver
DYQ48_10310	COG4191	Histidine kinase
DYQ48_10350	COG2915	High frequency lysogenization protein hflD homolog
DYQ48_10355	COG0482	sulfurtransferase activity
DYQ48_10365	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DYQ48_10370	COG0542	response to heat
DYQ48_10375	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DYQ48_10380	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DYQ48_10390	COG0492	ferredoxin-NADP+ reductase activity
DYQ48_10395	COG1674	ftsk spoiiie
DYQ48_10410	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DYQ48_10415	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DYQ48_10420	COG0183	Belongs to the thiolase family
DYQ48_10425	COG1024	Enoyl-CoA hydratase
DYQ48_10425	COG1250	3-hydroxyacyl-CoA dehydrogenase
DYQ48_10435	COG0105	UTP biosynthetic process
DYQ48_10440	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DYQ48_10460	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ48_10465	COG1160	GTP binding
DYQ48_10470	COG0303	'Molybdopterin
DYQ48_10475	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DYQ48_10485	COG0708	Exodeoxyribonuclease III
DYQ48_10495	COG0303	'Molybdopterin
DYQ48_10500	COG0746	molybdenum cofactor guanylyltransferase activity
DYQ48_10510	COG1648	precorrin-2 dehydrogenase activity
DYQ48_10510	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DYQ48_10520	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DYQ48_10530	COG2223	nitrite transmembrane transporter activity
DYQ48_10535	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DYQ48_10545	COG0243	molybdopterin cofactor binding
DYQ48_10565	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
DYQ48_10575	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DYQ48_10585	COG0579	oxidoreductase
DYQ48_10600	COG3685	Protein conserved in bacteria
DYQ48_10615	COG5001	Diguanylate cyclase
DYQ48_10650	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYQ48_10680	COG4191	Histidine kinase
DYQ48_10680	COG0784	Response regulator, receiver
DYQ48_10685	COG2205	protein histidine kinase activity
DYQ48_10715	COG3781	membrane
DYQ48_10720	COG4191	Histidine kinase
DYQ48_10725	COG2197	response regulator
DYQ48_10755	COG0840	transmembrane signaling receptor activity
DYQ48_10780	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_10810	COG1322	Protein conserved in bacteria
DYQ48_10845	COG2154	pterin-4-alpha-carbinolamine dehydratase
DYQ48_10920	COG1530	ribonuclease E activity
DYQ48_10950	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DYQ48_10990	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DYQ48_10995	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
DYQ48_11000	COG1663	tetraacyldisaccharide 4'-kinase activity
DYQ48_11005	COG1132	(ABC) transporter
DYQ48_11015	COG0811	peptide transport
DYQ48_11035	COG4591	ABC-type transport system involved in lipoprotein release permease component
DYQ48_11045	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DYQ48_11050	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DYQ48_11065	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DYQ48_11070	COG2009	succinate dehydrogenase
DYQ48_11080	COG0354	folic acid binding
DYQ48_11090	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DYQ48_11095	COG0837	glucose binding
DYQ48_11100	COG0363	glucosamine-6-phosphate deaminase activity
DYQ48_11105	COG0129	dihydroxy-acid dehydratase activity
DYQ48_11110	COG0800	Aldolase
DYQ48_11185	COG2205	protein histidine kinase activity
DYQ48_11185	COG5002	protein histidine kinase activity
DYQ48_11185	COG0784	Response regulator, receiver
DYQ48_11195	COG2183	response to ionizing radiation
DYQ48_11220	COG3243	poly(R)-hydroxyalkanoic acid synthase
DYQ48_11230	COG1183	phosphatidylcholine synthase activity
DYQ48_11235	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_11260	COG0668	transmembrane transport
DYQ48_11265	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DYQ48_11270	COG0590	tRNA wobble adenosine to inosine editing
DYQ48_11275	COG1321	iron dependent repressor
DYQ48_11280	COG1914	H( )-stimulated, divalent metal cation uptake system
DYQ48_11330	COG1396	sequence-specific DNA binding
DYQ48_11420	COG1487	ribonuclease activity
DYQ48_11425	COG4691	Plasmid stability protein
DYQ48_11510	COG0582	viral genome integration into host DNA
DYQ48_11530	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DYQ48_11540	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DYQ48_11540	COG0475	glutathione-regulated potassium exporter activity
DYQ48_11545	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DYQ48_11555	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DYQ48_11560	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
DYQ48_11570	COG0776	regulation of translation
DYQ48_11580	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DYQ48_11585	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DYQ48_11595	COG2957	Belongs to the agmatine deiminase family
DYQ48_11600	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DYQ48_11625	COG0395	ABC-type sugar transport system, permease component
DYQ48_11630	COG1175	transmembrane transport
DYQ48_11635	COG1653	transport
DYQ48_11660	COG2350	Protein conserved in bacteria
DYQ48_11665	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DYQ48_11670	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DYQ48_11675	COG1187	pseudouridine synthase activity
DYQ48_11695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DYQ48_11700	COG0436	Aminotransferase
DYQ48_11725	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
DYQ48_11765	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DYQ48_11770	COG4988	ABC transporter
DYQ48_11780	COG1294	oxidase, subunit
DYQ48_11815	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DYQ48_11830	COG0165	Argininosuccinate lyase
DYQ48_11845	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DYQ48_11855	COG0137	argininosuccinate synthase activity
DYQ48_11860	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DYQ48_11875	COG0215	cysteine-tRNA ligase activity
DYQ48_11880	COG2166	iron-sulfur cluster assembly
DYQ48_11890	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DYQ48_11900	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DYQ48_11920	COG4302	ethanolamine ammonia-lyase activity
DYQ48_11985	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DYQ48_11990	COG0402	S-adenosylhomocysteine deaminase activity
DYQ48_12005	COG1509	lysine 2,3-aminomutase activity
DYQ48_12010	COG5001	Diguanylate cyclase
DYQ48_12010	COG3300	MHYT domain
DYQ48_12025	COG0483	inositol monophosphate 1-phosphatase activity
DYQ48_12055	COG0628	permease
DYQ48_12070	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DYQ48_12100	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DYQ48_12105	COG0271	Belongs to the BolA IbaG family
DYQ48_12115	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DYQ48_12125	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DYQ48_12130	COG1137	ATPase activity
DYQ48_12145	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ48_12165	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ48_12170	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYQ48_12180	COG2239	Acts as a magnesium transporter
DYQ48_12190	COG1294	oxidase, subunit
DYQ48_12195	COG1271	oxidase subunit
DYQ48_12205	COG1113	amino acid transport
DYQ48_12220	COG2197	response regulator
DYQ48_12225	COG0531	amino acid
DYQ48_12280	COG2814	Major facilitator Superfamily
DYQ48_12285	COG0754	glutathionylspermidine amidase activity
DYQ48_12310	COG1842	Phage shock protein A
DYQ48_12325	COG0259	pyridoxamine-phosphate oxidase activity
DYQ48_12330	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DYQ48_12335	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DYQ48_12345	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DYQ48_12355	COG0513	Belongs to the DEAD box helicase family
DYQ48_12360	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DYQ48_12365	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
DYQ48_12375	COG0625	glutathione transferase activity
DYQ48_12390	COG4681	YaeQ
DYQ48_12395	COG2081	HI0933 family
DYQ48_12400	COG3300	MHYT domain
DYQ48_12400	COG5001	Diguanylate cyclase
DYQ48_12410	COG0501	Belongs to the peptidase M48B family
DYQ48_12415	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DYQ48_12420	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_12440	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DYQ48_12445	COG0860	N-Acetylmuramoyl-L-alanine amidase
DYQ48_12455	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DYQ48_12455	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DYQ48_12460	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DYQ48_12475	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DYQ48_12505	COG0835	chemotaxis
DYQ48_12510	COG0840	transmembrane signaling receptor activity
DYQ48_12520	COG1201	RNA secondary structure unwinding
DYQ48_12530	COG2969	positive regulation of protein catabolic process
DYQ48_12535	COG0625	glutathione transferase activity
DYQ48_12545	COG2857	Cytochrome c1
DYQ48_12550	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
DYQ48_12555	COG0723	plastoquinol--plastocyanin reductase activity
DYQ48_12560	COG0741	lytic transglycosylase activity
DYQ48_12575	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DYQ48_12580	COG1702	phosphate starvation-inducible protein PhoH
DYQ48_12600	COG4535	Mg2 and Co2 transporter CorC
DYQ48_12620	COG1012	belongs to the aldehyde dehydrogenase family
DYQ48_12630	COG1177	transmembrane transport
DYQ48_12635	COG1176	ABC-type spermidine putrescine transport system, permease component I
DYQ48_12645	COG3842	ATPase activity
DYQ48_12680	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DYQ48_12685	COG0174	glutamine synthetase
DYQ48_12690	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DYQ48_12700	COG0745	RESPONSE REGULATOR receiver
DYQ48_12700	COG3706	GGDEF domain
DYQ48_12725	COG0243	molybdopterin cofactor binding
DYQ48_12750	COG2733	membrane
DYQ48_12755	COG5002	protein histidine kinase activity
DYQ48_12755	COG0784	Response regulator, receiver
DYQ48_12755	COG2205	protein histidine kinase activity
DYQ48_12765	COG0477	Major facilitator Superfamily
DYQ48_12775	COG0604	alcohol dehydrogenase
DYQ48_12780	COG0300	oxidoreductase activity
DYQ48_12790	COG1902	pentaerythritol trinitrate reductase activity
DYQ48_12800	COG1064	alcohol dehydrogenase
DYQ48_12835	COG2902	Dehydrogenase
DYQ48_12845	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYQ48_12850	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYQ48_12855	COG1609	Transcriptional regulator
DYQ48_12860	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DYQ48_12860	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DYQ48_12865	COG1105	Belongs to the carbohydrate kinase PfkB family
DYQ48_12870	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYQ48_12870	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DYQ48_12935	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DYQ48_12945	COG1862	Preprotein translocase
DYQ48_12950	COG0343	queuine tRNA-ribosyltransferase activity
DYQ48_12955	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DYQ48_13000	COG3291	Pkd domain containing protein
DYQ48_13010	COG0405	Gamma-glutamyltransferase
DYQ48_13015	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DYQ48_13035	COG0742	ribosomal rna small subunit methyltransferase
DYQ48_13155	COG0531	amino acid
DYQ48_13170	COG0006	proline dipeptidase activity
DYQ48_13180	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DYQ48_13195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DYQ48_13200	COG3938	Belongs to the proline racemase family
DYQ48_13210	COG0552	protein localization to endoplasmic reticulum
DYQ48_13215	COG1194	a g-specific adenine glycosylase
DYQ48_13245	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DYQ48_13265	COG3040	lipid binding
DYQ48_13275	COG1960	acyl-CoA dehydrogenase activity
DYQ48_13285	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DYQ48_13305	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DYQ48_13310	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYQ48_13315	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DYQ48_13350	COG0438	transferase activity, transferring glycosyl groups
DYQ48_13355	COG0438	transferase activity, transferring glycosyl groups
DYQ48_13400	COG0776	regulation of translation
DYQ48_13405	COG0072	phenylalanine-tRNA ligase activity
DYQ48_13405	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ48_13410	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DYQ48_13420	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DYQ48_13425	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DYQ48_13430	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DYQ48_13495	COG3702	type iv secretory pathway
DYQ48_13515	COG2948	multi-organism process
DYQ48_13535	COG3505	Type IV secretory pathway VirD4
DYQ48_13550	COG0556	nucleotide-excision repair
DYQ48_13595	COG1611	Belongs to the LOG family
DYQ48_13605	COG2095	MarC family integral membrane protein
DYQ48_13610	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_13615	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DYQ48_13620	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DYQ48_13660	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DYQ48_13665	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DYQ48_13670	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DYQ48_13675	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DYQ48_13680	COG0195	Participates in both transcription termination and antitermination
DYQ48_13685	COG0779	Required for maturation of 30S ribosomal subunits
DYQ48_13695	COG1007	ATP synthesis coupled electron transport
DYQ48_13710	COG0713	ATP synthesis coupled electron transport
DYQ48_13715	COG0839	Belongs to the complex I subunit 6 family
DYQ48_13725	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DYQ48_13735	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DYQ48_13740	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DYQ48_13750	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DYQ48_13760	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DYQ48_13780	COG4221	oxidoreductase activity
DYQ48_13820	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYQ48_13840	COG0133	tryptophan synthase activity
DYQ48_13850	COG0135	phosphoribosylanthranilate isomerase activity
DYQ48_13870	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DYQ48_13875	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DYQ48_13890	COG2890	protein-(glutamine-N5) methyltransferase activity
DYQ48_13900	COG0688	phosphatidylethanolamine metabolic process
DYQ48_13910	COG0433	COG0433 Predicted ATPase
DYQ48_13975	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DYQ48_14005	COG0717	Belongs to the dCTP deaminase family
DYQ48_14015	COG0489	protein tyrosine kinase activity
DYQ48_14040	COG3590	peptidase
DYQ48_14065	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DYQ48_14070	COG2311	Membrane
DYQ48_14075	COG1047	Peptidyl-prolyl cis-trans
DYQ48_14080	COG0791	NLP P60 protein
DYQ48_14085	COG0791	NLP P60 protein
DYQ48_14100	COG1301	dicarboxylic acid transport
DYQ48_14105	COG1785	Belongs to the alkaline phosphatase family
DYQ48_14110	COG0037	tRNA processing
DYQ48_14115	COG1722	exodeoxyribonuclease VII activity
DYQ48_14120	COG0142	geranyltranstransferase activity
DYQ48_14125	COG4104	PAAR repeat-containing protein
DYQ48_14135	COG0312	modulator of DNA gyrase
DYQ48_14145	COG0312	modulator of DNA gyrase
DYQ48_14155	COG3164	Protein of unknown function
DYQ48_14160	COG1530	ribonuclease E activity
DYQ48_14180	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DYQ48_14200	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DYQ48_14215	COG0495	leucyl-tRNA aminoacylation
DYQ48_14225	COG3118	belongs to the thioredoxin family
DYQ48_14240	COG0415	Belongs to the DNA photolyase family
DYQ48_14250	COG0305	Participates in initiation and elongation during chromosome replication
DYQ48_14260	COG0367	asparagine synthase
DYQ48_14275	COG1960	acyl-CoA dehydrogenase activity
DYQ48_14290	COG0084	hydrolase, TatD family'
DYQ48_14295	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DYQ48_14330	COG0288	reversible hydration of carbon dioxide
DYQ48_14360	COG0386	Belongs to the glutathione peroxidase family
DYQ48_14365	COG0339	signal peptide processing
DYQ48_14420	COG2814	Major facilitator Superfamily
DYQ48_14425	COG1566	PFAM secretion protein HlyD family protein
DYQ48_14465	COG4774	siderophore transport
DYQ48_14475	COG0367	asparagine synthase
DYQ48_14480	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DYQ48_14485	COG1393	Belongs to the ArsC family
DYQ48_14500	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
DYQ48_14505	COG0024	Methionine aminopeptidase
DYQ48_14545	COG0052	Belongs to the universal ribosomal protein uS2 family
DYQ48_14550	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DYQ48_14555	COG0745	RESPONSE REGULATOR receiver
DYQ48_14555	COG3706	GGDEF domain
DYQ48_14560	COG0528	UMP kinase activity
DYQ48_14570	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DYQ48_14575	COG0575	Belongs to the CDS family
DYQ48_14580	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DYQ48_14585	COG0750	zinc metalloprotease
DYQ48_14600	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYQ48_14605	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DYQ48_14610	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYQ48_14615	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYQ48_14630	COG0825	malonyl-CoA metabolic process
DYQ48_14670	COG1695	Transcriptional regulator
DYQ48_14695	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DYQ48_14715	COG2040	homocysteine
DYQ48_14720	COG0833	amino acid
DYQ48_14725	COG0346	lactoylglutathione lyase activity
DYQ48_14730	COG1131	(ABC) transporter
DYQ48_14745	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ48_14745	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DYQ48_14755	COG2878	Part of a membrane complex involved in electron transport
DYQ48_14770	COG1595	DNA-templated transcription, initiation
DYQ48_14815	COG0251	oxidation-reduction process
DYQ48_14825	COG0392	lysyltransferase activity
DYQ48_14825	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
DYQ48_14860	COG2814	Major facilitator Superfamily
DYQ48_14865	COG1902	pentaerythritol trinitrate reductase activity
DYQ48_14880	COG2824	Alkylphosphonate utilization operon protein PhnA
DYQ48_14890	COG1047	Peptidyl-prolyl cis-trans
DYQ48_14930	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DYQ48_14940	COG5487	UPF0391 membrane protein
DYQ48_14945	COG1451	nucleotide metabolic process
DYQ48_14965	COG0183	Belongs to the thiolase family
DYQ48_14980	COG0745	RESPONSE REGULATOR receiver
DYQ48_14980	COG3706	GGDEF domain
DYQ48_14995	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DYQ48_14995	COG1793	dna ligase
DYQ48_15005	COG1793	dna ligase
DYQ48_15010	COG1201	RNA secondary structure unwinding
DYQ48_15025	COG1278	Cold shock
DYQ48_15030	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
DYQ48_15040	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ48_15045	COG3046	protein related to deoxyribodipyrimidine photolyase
DYQ48_15050	COG1233	COG1233 Phytoene dehydrogenase and related
DYQ48_15055	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
DYQ48_15085	COG1381	Involved in DNA repair and RecF pathway recombination
DYQ48_15090	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DYQ48_15115	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ48_15130	COG1024	Enoyl-CoA hydratase
DYQ48_15130	COG1250	3-hydroxyacyl-CoA dehydrogenase
DYQ48_15140	COG0457	Tetratricopeptide repeat
DYQ48_15180	COG1024	Enoyl-CoA hydratase
DYQ48_15185	COG1960	acyl-CoA dehydrogenase activity
DYQ48_15205	COG3867	Arabinogalactan endo-beta-1,4-galactanase
DYQ48_15210	COG3250	beta-galactosidase activity
DYQ48_15215	COG4948	Mandelate Racemase Muconate Lactonizing
DYQ48_15220	COG1301	dicarboxylic acid transport
DYQ48_15225	COG0583	DNA-binding transcription factor activity
DYQ48_15280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DYQ48_15290	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
DYQ48_15305	COG0534	Mate efflux family protein
DYQ48_15315	COG0336	Belongs to the RNA methyltransferase TrmD family
DYQ48_15345	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DYQ48_15390	COG3534	alpha-L-arabinofuranosidase
DYQ48_15415	COG4191	Histidine kinase
DYQ48_15415	COG0784	Response regulator, receiver
DYQ48_15420	COG3850	Histidine kinase
DYQ48_15420	COG3437	response regulator, receiver
DYQ48_15420	COG2205	protein histidine kinase activity
DYQ48_15420	COG4999	Histidine kinase
DYQ48_15425	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DYQ48_15430	COG2201	protein-glutamate methylesterase activity
DYQ48_15435	COG2205	protein histidine kinase activity
DYQ48_15440	COG5507	3-demethylubiquinone-9 3-methyltransferase
DYQ48_15450	COG4771	TonB-dependent receptor
DYQ48_15475	COG2172	sigma factor antagonist activity
DYQ48_15480	COG1366	Belongs to the anti-sigma-factor antagonist family
DYQ48_15485	COG1366	Belongs to the anti-sigma-factor antagonist family
DYQ48_15490	COG1902	pentaerythritol trinitrate reductase activity
DYQ48_15505	COG0326	Molecular chaperone. Has ATPase activity
DYQ48_15510	COG2207	Transcriptional regulator
DYQ48_15520	COG3152	Membrane
DYQ48_15535	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DYQ48_15540	COG1845	cytochrome c oxidase, subunit III
DYQ48_15545	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DYQ48_15565	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DYQ48_15575	COG0196	riboflavin kinase activity
DYQ48_15605	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DYQ48_15610	COG0824	Thioesterase
DYQ48_15620	COG1024	Enoyl-CoA hydratase
DYQ48_15625	COG1946	Acyl-CoA thioesterase
DYQ48_15635	COG1595	DNA-templated transcription, initiation
DYQ48_15655	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
DYQ48_15705	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
DYQ48_15720	COG2197	response regulator
DYQ48_15725	COG4585	Histidine kinase
DYQ48_15745	COG2894	cell division
DYQ48_15750	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
DYQ48_15760	COG5002	protein histidine kinase activity
DYQ48_15765	COG0745	RESPONSE REGULATOR receiver
DYQ48_15780	COG2194	sulfuric ester hydrolase activity
DYQ48_15805	COG2814	Major facilitator Superfamily
DYQ48_15810	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DYQ48_15810	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DYQ48_15825	COG0656	L-ascorbic acid biosynthetic process
DYQ48_15835	COG0753	catalase activity
DYQ48_15845	COG2207	Transcriptional regulator
DYQ48_15845	COG1917	Cupin 2, conserved barrel domain protein
DYQ48_15855	COG0823	Involved in the tonB-independent uptake of proteins
DYQ48_15855	COG1506	peptidase
DYQ48_15865	COG1297	OPT oligopeptide transporter protein
DYQ48_15880	COG0587	DNA-directed DNA polymerase activity
DYQ48_15935	COG2080	2 iron, 2 sulfur cluster binding
DYQ48_15940	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
DYQ48_15945	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DYQ48_15995	COG3537	Alpha-1,2-mannosidase
DYQ48_16005	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_16020	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DYQ48_16025	COG0328	RNA-DNA hybrid ribonuclease activity
DYQ48_16025	COG0406	alpha-ribazole phosphatase activity
DYQ48_16095	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
DYQ48_16110	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
DYQ48_16160	COG0330	HflC and HflK could
DYQ48_16165	COG0330	HflC and HflK could
DYQ48_16185	COG0678	peroxiredoxin activity
DYQ48_16195	COG4953	penicillin-binding protein 1C
DYQ48_16215	COG2373	Large extracellular alpha-helical protein
DYQ48_16250	COG3829	transcription factor binding
DYQ48_16260	COG2161	toxin-antitoxin pair type II binding
DYQ48_16265	COG4115	mRNA cleavage
DYQ48_16285	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DYQ48_16290	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DYQ48_16300	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYQ48_16310	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DYQ48_16320	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DYQ48_16325	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DYQ48_16330	COG1399	metal-binding, possibly nucleic acid-binding protein
DYQ48_16335	COG0424	maF-like protein
DYQ48_16350	COG0714	Associated with various cellular activities
DYQ48_16370	COG0537	adenosine 5'-monophosphoramidase activity
DYQ48_16380	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DYQ48_16510	COG0314	molybdopterin synthase activity
DYQ48_16515	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
DYQ48_16525	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DYQ48_16530	COG1234	tRNA 3'-trailer cleavage
DYQ48_16540	COG0859	PFAM glycosyl transferase family 9
DYQ48_16555	COG0631	protein serine/threonine phosphatase activity
DYQ48_16560	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DYQ48_16575	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DYQ48_16585	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DYQ48_16615	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DYQ48_16620	COG0740	serine-type endopeptidase activity
DYQ48_16625	COG0544	peptidyl-prolyl cis-trans isomerase activity
DYQ48_16675	COG4695	Portal protein
DYQ48_16940	COG0473	3-isopropylmalate dehydrogenase activity
DYQ48_16955	COG4783	chaperone-mediated protein folding
DYQ48_16960	COG0745	RESPONSE REGULATOR receiver
DYQ48_16970	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DYQ48_16980	COG0438	transferase activity, transferring glycosyl groups
DYQ48_16985	COG0671	phosphoesterase, PA-phosphatase related
DYQ48_16990	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DYQ48_17000	COG3291	Pkd domain containing protein
DYQ48_17005	COG2833	Protein of unknown function (DUF455)
DYQ48_17025	COG0285	dihydrofolate synthase activity
DYQ48_17035	COG0406	alpha-ribazole phosphatase activity
DYQ48_17060	COG1063	alcohol dehydrogenase
DYQ48_17070	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DYQ48_17075	COG4208	sulfate ABC transporter
DYQ48_17080	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DYQ48_17085	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DYQ48_17090	COG0156	8-amino-7-oxononanoate synthase activity
DYQ48_17110	COG2885	chlorophyll binding
DYQ48_17120	COG0604	alcohol dehydrogenase
DYQ48_17125	COG0446	pyridine nucleotide-disulphide oxidoreductase
DYQ48_17125	COG1902	pentaerythritol trinitrate reductase activity
DYQ48_17140	COG0625	glutathione transferase activity
DYQ48_17150	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DYQ48_17165	COG0154	amidase activity
DYQ48_17175	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
DYQ48_17190	COG0203	ribosomal protein L17
DYQ48_17195	COG0202	RNA polymerase activity
DYQ48_17200	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DYQ48_17205	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DYQ48_17210	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DYQ48_17215	COG0201	protein transport
DYQ48_17230	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DYQ48_17250	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DYQ48_17260	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DYQ48_17265	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DYQ48_17270	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DYQ48_17275	COG0255	Belongs to the universal ribosomal protein uL29 family
DYQ48_17300	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DYQ48_17320	COG0051	transcription antitermination factor activity, RNA binding
DYQ48_17325	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DYQ48_17340	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DYQ48_17355	COG0222	ribosome binding
DYQ48_17360	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DYQ48_17365	COG0081	regulation of translation
DYQ48_17370	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DYQ48_17375	COG0250	Participates in transcription elongation, termination and antitermination
DYQ48_17380	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DYQ48_17390	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DYQ48_17455	COG0582	viral genome integration into host DNA
DYQ48_17460	COG0012	GTP binding
DYQ48_17465	COG0193	aminoacyl-tRNA hydrolase activity
DYQ48_17470	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DYQ48_17475	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DYQ48_17490	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
DYQ48_17500	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DYQ48_17520	COG0521	Mo-molybdopterin cofactor biosynthetic process
DYQ48_17540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DYQ48_17545	COG1295	ribonuclease BN
DYQ48_17570	COG1404	Belongs to the peptidase S8 family
DYQ48_17580	COG1404	Belongs to the peptidase S8 family
DYQ48_17585	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DYQ48_17635	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ48_17635	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ48_17655	COG2890	protein-(glutamine-N5) methyltransferase activity
DYQ48_17665	COG3634	alkyl hydroperoxide reductase activity
DYQ48_17670	COG0583	DNA-binding transcription factor activity
DYQ48_17675	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DYQ48_17680	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DYQ48_17690	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DYQ48_17700	COG2197	response regulator
DYQ48_17705	COG0784	Response regulator, receiver
DYQ48_17705	COG5002	protein histidine kinase activity
DYQ48_17705	COG2205	protein histidine kinase activity
DYQ48_17710	COG0745	RESPONSE REGULATOR receiver
DYQ48_17710	COG3706	GGDEF domain
DYQ48_17725	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DYQ48_17730	COG0697	spore germination
DYQ48_17755	COG3386	PFAM SMP-30 Gluconolaconase
DYQ48_17775	COG1024	Enoyl-CoA hydratase
DYQ48_17785	COG0318	PFAM AMP-dependent synthetase and ligase
DYQ48_17790	COG0583	DNA-binding transcription factor activity
DYQ48_17795	COG3384	dioxygenase
DYQ48_17825	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYQ48_17830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DYQ48_17840	COG2096	Adenosyltransferase
DYQ48_17845	COG0123	including yeast histone deacetylase and acetoin utilization protein
DYQ48_17850	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DYQ48_17860	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DYQ48_17865	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DYQ48_17870	COG2967	ApaG domain
DYQ48_17875	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DYQ48_17880	COG0431	NADPH-dependent FMN reductase
DYQ48_17885	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYQ48_17895	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ48_17900	COG1116	anion transmembrane transporter activity
DYQ48_17920	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DYQ48_17940	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DYQ48_17950	COG0642	Histidine kinase
DYQ48_17965	COG4181	ATPase activity
DYQ48_17985	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DYQ48_17990	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DYQ48_18055	COG4771	TonB-dependent receptor
DYQ48_18065	COG0667	Aldo Keto reductase
DYQ48_18070	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DYQ48_18085	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYQ48_18090	COG4106	trans-aconitate 2-methyltransferase activity
DYQ48_18100	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DYQ48_18110	COG2885	chlorophyll binding
DYQ48_18130	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
DYQ48_18195	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_18195	COG3321	synthase
DYQ48_18195	COG0604	alcohol dehydrogenase
DYQ48_18205	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DYQ48_18225	COG0494	nUDIX hydrolase
DYQ48_18235	COG0653	protein targeting
DYQ48_18240	COG0739	heme binding
DYQ48_18270	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DYQ48_18275	COG1181	Belongs to the D-alanine--D-alanine ligase family
DYQ48_18280	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DYQ48_18300	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DYQ48_18305	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DYQ48_18315	COG3116	cell division
DYQ48_18365	COG1988	membrane-bound metal-dependent
DYQ48_18370	COG0277	FAD linked oxidase domain protein
DYQ48_18375	COG0745	RESPONSE REGULATOR receiver
DYQ48_18380	COG2205	protein histidine kinase activity
DYQ48_18390	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DYQ48_18395	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
DYQ48_18425	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DYQ48_18465	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DYQ48_18465	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DYQ48_18480	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DYQ48_18490	COG0488	(ABC) transporter
DYQ48_18495	COG0242	peptide deformylase activity
DYQ48_18510	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DYQ48_18555	COG2188	Transcriptional regulator
DYQ48_18590	COG1450	Type ii and iii secretion system protein
DYQ48_18605	COG3166	PFAM Fimbrial assembly family protein
DYQ48_18610	COG3156	type II secretion system protein K
DYQ48_18615	COG4795	General secretion pathway protein
DYQ48_18620	COG2165	general secretion pathway protein
DYQ48_18625	COG4970	Tfp pilus assembly protein FimT
DYQ48_18630	COG2165	general secretion pathway protein
DYQ48_18635	COG1459	type II secretion system
DYQ48_18640	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DYQ48_18645	COG1404	Belongs to the peptidase S8 family
DYQ48_18650	COG5295	Hep Hag repeat protein
DYQ48_18655	COG1404	Belongs to the peptidase S8 family
DYQ48_18665	COG0047	phosphoribosylformylglycinamidine synthase activity
DYQ48_18665	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DYQ48_18670	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DYQ48_18675	COG4974	Belongs to the 'phage' integrase family
DYQ48_18690	COG0795	lipopolysaccharide-transporting ATPase activity
DYQ48_18710	COG0525	valine-tRNA ligase activity
DYQ48_18740	COG1183	phosphatidylcholine synthase activity
DYQ48_18765	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DYQ48_18770	COG1127	ABC transporter
DYQ48_18775	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DYQ48_18775	COG3218	ABC-type transport auxiliary lipoprotein component
DYQ48_18820	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DYQ48_18825	COG0662	Cupin 2, conserved barrel domain protein
DYQ48_18825	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
DYQ48_18850	COG2086	electron transfer activity
DYQ48_18870	COG0463	Glycosyl transferase, family 2
DYQ48_18895	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
DYQ48_18935	COG0626	cystathionine gamma-synthase activity
DYQ48_18965	COG0625	glutathione transferase activity
DYQ48_18980	COG0513	Belongs to the DEAD box helicase family
DYQ48_18990	COG4771	TonB-dependent receptor
DYQ48_18995	COG0720	synthase
DYQ48_19005	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DYQ48_19010	COG1956	GAF domain-containing protein
DYQ48_19020	COG2819	hydrolase of the alpha beta superfamily
DYQ48_19040	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DYQ48_19055	COG0339	signal peptide processing
DYQ48_19100	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DYQ48_19105	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DYQ48_19115	COG1136	(ABC) transporter
DYQ48_19125	COG0577	efflux transmembrane transporter activity
DYQ48_19130	COG2204	response regulator
DYQ48_19135	COG4191	Histidine kinase
DYQ48_19145	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DYQ48_19160	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DYQ48_19180	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DYQ48_19185	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DYQ48_19195	COG0356	it plays a direct role in the translocation of protons across the membrane
DYQ48_19210	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DYQ48_19220	COG0508	dehydrogenase complex catalyzes the overall conversion of
DYQ48_19250	COG2011	ABC-type metal ion transport system permease component
DYQ48_19255	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DYQ48_19260	COG0697	spore germination
DYQ48_19285	COG1187	pseudouridine synthase activity
DYQ48_19290	COG2813	Specifically methylates the guanine in position
DYQ48_19315	COG2205	protein histidine kinase activity
DYQ48_19315	COG2198	Histidine kinase
DYQ48_19315	COG0784	Response regulator, receiver
DYQ48_19315	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DYQ48_19335	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DYQ48_19340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DYQ48_19345	COG1522	sequence-specific DNA binding
DYQ48_19405	COG3039	Transposase
DYQ48_19460	COG0842	Transport permease protein
DYQ48_19465	COG1131	(ABC) transporter
DYQ48_19475	COG0025	NhaP-type Na H and K H
DYQ48_19490	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
DYQ48_19495	COG1573	uracil-dna glycosylase
DYQ48_19510	COG3384	dioxygenase
DYQ48_19520	COG0583	DNA-binding transcription factor activity
DYQ48_19530	COG0667	Aldo Keto reductase
DYQ48_19540	COG3590	peptidase
DYQ48_19565	COG0531	amino acid
DYQ48_19580	COG2972	Histidine kinase
DYQ48_19600	COG3685	Protein conserved in bacteria
DYQ48_19605	COG3546	catalase activity
DYQ48_19630	COG2204	response regulator
DYQ48_19645	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_19655	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DYQ48_19675	COG1132	(ABC) transporter
DYQ48_19690	COG1063	alcohol dehydrogenase
DYQ48_19710	COG0583	DNA-binding transcription factor activity
DYQ48_19715	COG2814	Major facilitator Superfamily
DYQ48_19770	COG0251	oxidation-reduction process
DYQ48_19800	COG0659	secondary active sulfate transmembrane transporter activity
DYQ48_19820	COG4977	sequence-specific DNA binding
DYQ48_19835	COG1309	transcriptional regulator
DYQ48_19840	COG0583	DNA-binding transcription factor activity
DYQ48_19845	COG1902	pentaerythritol trinitrate reductase activity
DYQ48_19865	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ48_19870	COG1490	D-aminoacyl-tRNA deacylase activity
DYQ48_19875	COG1560	Kdo2-lipid A biosynthetic process
DYQ48_19885	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DYQ48_19925	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DYQ48_19925	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DYQ48_19930	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DYQ48_19935	COG0242	peptide deformylase activity
DYQ48_19940	COG1652	LysM domain
DYQ48_19945	COG0758	DNA mediated transformation
DYQ48_19965	COG1754	DNA topoisomerase type I activity
DYQ48_19965	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DYQ48_19970	COG0009	L-threonylcarbamoyladenylate synthase
DYQ48_19985	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_19995	COG0616	signal peptide processing
DYQ48_20000	COG0534	Mate efflux family protein
DYQ48_20015	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DYQ48_20025	COG0625	glutathione transferase activity
DYQ48_20045	COG1252	NADH dehydrogenase
DYQ48_20050	COG2860	membrane
DYQ48_20055	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DYQ48_20060	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DYQ48_20065	COG3437	response regulator, receiver
DYQ48_20070	COG2177	Part of the ABC transporter FtsEX involved in
DYQ48_20075	COG2884	Cell division ATP-binding protein ftsE
DYQ48_20085	COG3118	belongs to the thioredoxin family
DYQ48_20090	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DYQ48_20110	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
DYQ48_20140	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
DYQ48_20140	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
DYQ48_20145	COG1473	amidohydrolase
DYQ48_20150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYQ48_20155	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DYQ48_20170	COG4948	Mandelate Racemase Muconate Lactonizing
DYQ48_20180	COG3023	N-Acetylmuramoyl-L-alanine amidase
DYQ48_20185	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
DYQ48_20225	COG5383	Protein conserved in bacteria
DYQ48_20245	COG0531	amino acid
DYQ48_20260	COG4682	membrane
DYQ48_20265	COG2133	pyrroloquinoline quinone binding
DYQ48_20280	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DYQ48_20290	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DYQ48_20295	COG1610	YqeY-like protein
DYQ48_20300	COG1295	ribonuclease BN
DYQ48_20305	COG0358	DNA primase activity
DYQ48_20320	COG0109	protoheme IX farnesyltransferase activity
DYQ48_20350	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
DYQ48_20365	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DYQ48_20410	COG0739	heme binding
DYQ48_20425	COG2807	transmembrane transport
DYQ48_20430	COG0708	Exodeoxyribonuclease III
DYQ48_20445	COG1192	Involved in chromosome partitioning
DYQ48_20450	COG1475	DNA binding
DYQ48_20465	COG0463	Glycosyl transferase, family 2
DYQ48_20485	COG0756	dUTP diphosphatase activity
DYQ48_20490	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DYQ48_20500	COG0018	arginyl-trna synthetase
DYQ48_20510	COG4221	oxidoreductase activity
DYQ48_20515	COG2755	lipolytic protein G-D-S-L family
DYQ48_20515	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DYQ48_20525	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DYQ48_20530	COG1166	arginine decarboxylase activity
DYQ48_20565	COG2960	long-chain fatty acid transporting porin activity
DYQ48_20570	COG0606	chelatase, subunit chli
DYQ48_20590	COG4943	cyclic-guanylate-specific phosphodiesterase activity
DYQ48_20640	COG1090	epimerase
DYQ48_20645	COG0745	RESPONSE REGULATOR receiver
DYQ48_20650	COG0642	Histidine kinase
DYQ48_20670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DYQ48_20695	COG1011	Hydrolase
DYQ48_20700	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DYQ48_20725	COG2197	response regulator
DYQ48_20730	COG4585	Histidine kinase
DYQ48_20735	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYQ48_20740	COG1136	(ABC) transporter
DYQ48_20765	COG0697	spore germination
DYQ48_20795	COG0180	Tryptophanyl-tRNA synthetase
DYQ48_20800	COG3237	CsbD-like
DYQ48_20840	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DYQ48_20855	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DYQ48_20860	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
DYQ48_20860	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
DYQ48_20870	COG3228	Belongs to the MtfA family
DYQ48_20885	COG2205	protein histidine kinase activity
DYQ48_20890	COG0745	RESPONSE REGULATOR receiver
DYQ48_20900	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DYQ48_20930	COG1199	ATP-dependent helicase activity
DYQ48_20965	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
DYQ48_21010	COG0625	glutathione transferase activity
DYQ48_21045	COG4555	ABC transporter
DYQ48_21055	COG1476	TRANSCRIPTIONal
DYQ48_21085	COG1131	(ABC) transporter
DYQ48_21090	COG0842	Transport permease protein
DYQ48_21100	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DYQ48_21120	COG1607	acyl-coa hydrolase
DYQ48_21135	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYQ48_21145	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DYQ48_21160	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DYQ48_21160	COG1042	CoA-binding domain protein
DYQ48_21160	COG0045	succinate-CoA ligase (ADP-forming) activity
DYQ48_21175	COG1629	transport
DYQ48_21175	COG4771	TonB-dependent receptor
DYQ48_21180	COG2239	Acts as a magnesium transporter
DYQ48_21195	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DYQ48_21200	COG3387	PFAM Glycoside hydrolase 15-related
DYQ48_21215	COG3100	YcgL domain-containing protein
DYQ48_21220	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DYQ48_21260	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_21285	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DYQ48_21300	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DYQ48_21345	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ48_21345	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DYQ48_21400	COG0210	DNA helicase
DYQ48_21415	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYQ48_21425	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DYQ48_21435	COG2159	amidohydrolase
DYQ48_21440	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DYQ48_21445	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DYQ48_21455	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DYQ48_21485	COG3540	Alkaline phosphatase
DYQ48_21495	COG2091	lysine biosynthetic process via aminoadipic acid
DYQ48_21510	COG0708	Exodeoxyribonuclease III
DYQ48_21525	COG1940	carbohydrate kinase activity
DYQ48_21535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DYQ48_21545	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DYQ48_21550	COG3162	membrane
DYQ48_21620	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_21625	COG0179	Fumarylacetoacetate (FAA) hydrolase
DYQ48_21630	COG4948	Mandelate Racemase Muconate Lactonizing
DYQ48_21645	COG3254	rhamnose metabolic process
DYQ48_21650	COG0738	Major facilitator superfamily
DYQ48_21655	COG1414	Transcriptional regulator
DYQ48_21670	COG1971	Probably functions as a manganese efflux pump
DYQ48_21675	COG2205	protein histidine kinase activity
DYQ48_21685	COG3459	Glycosyltransferase 36 associated
DYQ48_21690	COG2211	Major facilitator Superfamily
DYQ48_21695	COG3265	gluconokinase activity
DYQ48_21700	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DYQ48_21720	COG3039	Transposase
DYQ48_21740	COG2911	Protein conserved in bacteria
DYQ48_21745	COG0729	surface antigen
DYQ48_21760	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DYQ48_21775	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DYQ48_21775	COG0519	Catalyzes the synthesis of GMP from XMP
DYQ48_21785	COG0805	protein transport
DYQ48_21790	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DYQ48_21795	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DYQ48_21805	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
DYQ48_21820	COG2974	May be involved in recombination
DYQ48_21825	COG0037	tRNA processing
DYQ48_21835	COG2115	Belongs to the xylose isomerase family
DYQ48_21845	COG3661	Belongs to the glycosyl hydrolase 67 family
DYQ48_21855	COG4948	Mandelate Racemase Muconate Lactonizing
DYQ48_21865	COG1472	Belongs to the glycosyl hydrolase 3 family
DYQ48_21870	COG0246	Mannitol dehydrogenase
DYQ48_21895	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DYQ48_21900	COG1620	l-lactate permease
DYQ48_21910	COG3386	PFAM SMP-30 Gluconolaconase
DYQ48_21920	COG3250	beta-galactosidase activity
DYQ48_21925	COG1904	glucuronate isomerase
DYQ48_21930	COG3693	PFAM glycoside hydrolase, family 10
DYQ48_21945	COG2211	Major facilitator Superfamily
DYQ48_22010	COG2937	Belongs to the GPAT DAPAT family
DYQ48_22035	COG0284	orotidine-5'-phosphate decarboxylase activity
DYQ48_22040	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
DYQ48_22045	COG3132	Protein of unknown function, DUF480
DYQ48_22065	COG0210	DNA helicase
DYQ48_22070	COG1435	thymidine kinase activity
DYQ48_22080	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
DYQ48_22090	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
DYQ48_22120	COG3135	benzoate transporter
DYQ48_22140	COG0676	glucose-6-phosphate 1-epimerase activity
DYQ48_22150	COG3012	SEC-C Motif Domain Protein
DYQ48_22155	COG0730	response to heat
DYQ48_22185	COG0302	gtp cyclohydrolase
DYQ48_22200	COG1566	PFAM secretion protein HlyD family protein
DYQ48_22210	COG1289	transmembrane transporter activity
DYQ48_22215	COG0477	Major facilitator Superfamily
DYQ48_22220	COG0583	DNA-binding transcription factor activity
DYQ48_22225	COG4221	oxidoreductase activity
DYQ48_22235	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DYQ48_22265	COG1192	Involved in chromosome partitioning
DYQ48_22275	COG3550	peptidyl-serine autophosphorylation
DYQ48_22365	COG2207	Transcriptional regulator
DYQ48_22370	COG1028	Short-chain dehydrogenase reductase Sdr
DYQ48_22380	COG3549	Plasmid maintenance system killer
DYQ48_22390	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DYQ48_22395	COG1074	ATP-dependent DNA helicase activity
DYQ48_22400	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DYQ48_22405	COG1127	ABC transporter
DYQ48_22410	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DYQ48_22415	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DYQ48_22430	COG2853	Lipoprotein
DYQ48_22460	COG0386	Belongs to the glutathione peroxidase family
DYQ48_22470	COG1322	Protein conserved in bacteria
DYQ48_22475	COG0625	glutathione transferase activity
DYQ48_22480	COG0531	amino acid
DYQ48_22485	COG3537	Alpha-1,2-mannosidase
DYQ48_22500	COG2203	Gaf domain
DYQ48_22500	COG2199	diguanylate cyclase activity
DYQ48_22505	COG3835	regulator
DYQ48_22510	COG1929	Belongs to the glycerate kinase type-1 family
DYQ48_22515	COG2271	Major facilitator Superfamily
DYQ48_22555	COG1126	abc transporter atp-binding protein
DYQ48_22565	COG1473	amidohydrolase
DYQ48_22570	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYQ48_22575	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DYQ48_22585	COG4206	TonB-dependent receptor
DYQ48_22605	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DYQ48_22615	COG0861	Integral membrane protein TerC family
DYQ48_22625	COG0584	glycerophosphoryl diester phosphodiesterase
DYQ48_22650	COG0706	membrane insertase activity
DYQ48_22660	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DYQ48_22705	COG5599	Phosphatase
DYQ48_22850	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
DYQ48_22955	COG0653	protein targeting