locus-tag class description NMB96_00005 PF00144 Beta-lactamase NMB96_00010 PF07690 Major Facilitator Superfamily NMB96_00035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_00035 PF03466 LysR substrate binding domain NMB96_00075 PF04002 RadC-like JAB domain NMB96_00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_00140 PF00512 His Kinase A (phospho-acceptor) domain NMB96_00140 PF08448 PAS fold NMB96_00140 PF13188 PAS domain NMB96_00140 PF00072 Response regulator receiver domain NMB96_00145 PF00072 Response regulator receiver domain NMB96_00145 PF13426 PAS domain NMB96_00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_00160 PF01695 IstB-like ATP binding protein NMB96_00165 PF00665 Integrase core domain NMB96_00185 PF05394 Avirulence protein NMB96_00215 PF00657 GDSL-like Lipase/Acylhydrolase NMB96_00215 PF03797 Autotransporter beta-domain NMB96_00225 PF05690 Thiazole biosynthesis protein ThiG NMB96_00230 PF02390 Putative methyltransferase NMB96_00235 PF02080 TrkA-C domain NMB96_00235 PF03600 Citrate transporter NMB96_00250 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMB96_00255 PF01741 Large-conductance mechanosensitive channel, MscL NMB96_00265 PF00356 Bacterial regulatory proteins, lacI family NMB96_00275 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain NMB96_00275 PF02837 Glycosyl hydrolases family 2, sugar binding domain NMB96_00275 PF00703 Glycosyl hydrolases family 2 NMB96_00280 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation NMB96_00280 PF14508 Glycosyl-hydrolase 97 N-terminal NMB96_00280 PF10566 Glycoside hydrolase 97 NMB96_00290 PF00135 Carboxylesterase family NMB96_00295 PF08032 RNA 2'-O ribose methyltransferase substrate binding NMB96_00295 PF00588 SpoU rRNA Methylase family NMB96_00305 PF01433 Peptidase family M1 domain NMB96_00305 PF11838 ERAP1-like C-terminal domain NMB96_00315 PF00873 AcrB/AcrD/AcrF family NMB96_00320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_00320 PF00529 HlyD membrane-fusion protein of T1SS NMB96_00325 PF00009 Elongation factor Tu GTP binding domain NMB96_00330 PF01507 Phosphoadenosine phosphosulfate reductase family NMB96_00335 PF00258 Flavodoxin NMB96_00335 PF00175 Oxidoreductase NAD-binding domain NMB96_00335 PF00667 FAD binding domain NMB96_00340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NMB96_00340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMB96_00345 PF01507 Phosphoadenosine phosphosulfate reductase family NMB96_00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_00365 PF00512 His Kinase A (phospho-acceptor) domain NMB96_00365 PF01627 Hpt domain NMB96_00365 PF00072 Response regulator receiver domain NMB96_00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_00375 PF03466 LysR substrate binding domain NMB96_00380 PF10414 Sirohaem synthase dimerisation region NMB96_00380 PF14824 Sirohaem biosynthesis protein central NMB96_00380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMB96_00385 PF00291 Pyridoxal-phosphate dependent enzyme NMB96_00395 PF01661 Macro domain NMB96_00400 PF00274 Fructose-bisphosphate aldolase class-I NMB96_00405 PF02887 Pyruvate kinase, alpha/beta domain NMB96_00405 PF00224 Pyruvate kinase, barrel domain NMB96_00410 PF13419 Haloacid dehalogenase-like hydrolase NMB96_00415 PF00162 Phosphoglycerate kinase NMB96_00435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NMB96_00435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NMB96_00450 PF03922 OmpW family NMB96_00460 PF04273 Putative phosphatase (DUF442) NMB96_00460 PF00753 Metallo-beta-lactamase superfamily NMB96_00470 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_00475 PF00005 ABC transporter NMB96_00475 PF03459 TOBE domain NMB96_00490 PF03965 Penicillinase repressor NMB96_00510 PF03734 L,D-transpeptidase catalytic domain NMB96_00510 PF01476 LysM domain NMB96_00530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_00530 PF03466 LysR substrate binding domain NMB96_00535 PF07715 TonB-dependent Receptor Plug Domain NMB96_00535 PF00593 TonB dependent receptor NMB96_00540 PF12146 Serine aminopeptidase, S33 NMB96_00545 PF02779 Transketolase, pyrimidine binding domain NMB96_00545 PF02780 Transketolase, C-terminal domain NMB96_00545 PF00456 Transketolase, thiamine diphosphate binding domain NMB96_00550 PF00375 Sodium:dicarboxylate symporter family NMB96_00560 PF07584 Aerotolerance regulator N-terminal NMB96_00560 PF13519 von Willebrand factor type A domain NMB96_00580 PF17863 AAA lid domain NMB96_00580 PF07726 ATPase family associated with various cellular activities (AAA) NMB96_00585 PF07660 Secretin and TonB N terminus short domain NMB96_00585 PF03958 Bacterial type II/III secretion system short domain NMB96_00585 PF00263 Bacterial type II and III secretion system protein NMB96_00585 PF11741 AMIN domain NMB96_00590 PF04351 Pilus assembly protein, PilP NMB96_00595 PF04350 Pilus assembly protein, PilO NMB96_00600 PF05137 Fimbrial assembly protein (PilN) NMB96_00605 PF11104 Type IV pilus assembly protein PilM; NMB96_00610 PF00905 Penicillin binding protein transpeptidase domain NMB96_00610 PF00912 Transglycosylase NMB96_00610 PF17092 Penicillin-binding protein OB-like domain NMB96_00620 PF00285 Citrate synthase, C-terminal domain NMB96_00625 PF01197 Ribosomal protein L31 NMB96_00630 PF01156 Inosine-uridine preferring nucleoside hydrolase NMB96_00635 PF00271 Helicase conserved C-terminal domain NMB96_00635 PF00270 DEAD/DEAH box helicase NMB96_00635 PF17191 RecG wedge domain NMB96_00640 PF01042 Endoribonuclease L-PSP NMB96_00645 PF02824 TGS domain NMB96_00645 PF04607 Region found in RelA / SpoT proteins NMB96_00645 PF13291 ACT domain NMB96_00650 PF01192 RNA polymerase Rpb6 NMB96_00655 PF00625 Guanylate kinase NMB96_00660 PF08340 Domain of unknown function (DUF1732) NMB96_00660 PF03755 YicC-like family, N-terminal region NMB96_00665 PF01138 3' exoribonuclease family, domain 1 NMB96_00665 PF03725 3' exoribonuclease family, domain 2 NMB96_00670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMB96_00675 PF01725 Ham1 family NMB96_00680 PF04055 Radical SAM superfamily NMB96_00680 PF06969 HemN C-terminal domain NMB96_00695 PF00557 Metallopeptidase family M24 NMB96_00705 PF05195 Aminopeptidase P, N-terminal domain NMB96_00705 PF00557 Metallopeptidase family M24 NMB96_00710 PF03695 Uncharacterised protein family (UPF0149) NMB96_00720 PF05164 Cell division protein ZapA NMB96_00730 PF01812 5-formyltetrahydrofolate cyclo-ligase family NMB96_00740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NMB96_00750 PF13369 Transglutaminase-like superfamily NMB96_00755 PF00301 Rubredoxin NMB96_00760 PF02581 Thiamine monophosphate synthase NMB96_00770 PF00202 Aminotransferase class-III NMB96_00775 PF00196 Bacterial regulatory proteins, luxR family NMB96_00775 PF17874 MalT-like TPR region NMB96_00780 PF00127 Copper binding proteins, plastocyanin/azurin family NMB96_00785 PF00155 Aminotransferase class I and II NMB96_00795 PF00034 Cytochrome c NMB96_00795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NMB96_00800 PF01593 Flavin containing amine oxidoreductase NMB96_00815 PF00202 Aminotransferase class-III NMB96_00820 PF00027 Cyclic nucleotide-binding domain NMB96_00820 PF00520 Ion transport protein NMB96_00845 PF01569 PAP2 superfamily NMB96_00850 PF01062 Bestrophin, RFP-TM, chloride channel NMB96_00860 PF01225 Mur ligase family, catalytic domain NMB96_00860 PF08245 Mur ligase middle domain NMB96_00860 PF02875 Mur ligase family, glutamate ligase domain NMB96_00870 PF00365 Phosphofructokinase NMB96_00880 PF03030 Inorganic H+ pyrophosphatase NMB96_00890 PF00719 Inorganic pyrophosphatase NMB96_00900 PF07715 TonB-dependent Receptor Plug Domain NMB96_00900 PF00593 TonB dependent receptor NMB96_00905 PF12833 Helix-turn-helix domain NMB96_00910 PF18500 CadC C-terminal domain 1 NMB96_00910 PF00486 Transcriptional regulatory protein, C terminal NMB96_00915 PF01964 Radical SAM ThiC family NMB96_00915 PF13667 ThiC-associated domain NMB96_00920 PF07715 TonB-dependent Receptor Plug Domain NMB96_00920 PF00593 TonB dependent receptor NMB96_00930 PF07676 WD40-like Beta Propeller Repeat NMB96_00930 PF00326 Prolyl oligopeptidase family NMB96_00935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_00935 PF02203 Tar ligand binding domain homologue NMB96_00935 PF00672 HAMP domain NMB96_00945 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NMB96_00945 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NMB96_00950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMB96_00950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMB96_00950 PF00205 Thiamine pyrophosphate enzyme, central domain NMB96_00960 PF00291 Pyridoxal-phosphate dependent enzyme NMB96_00965 PF00682 HMGL-like NMB96_00965 PF08502 LeuA allosteric (dimerisation) domain NMB96_00970 PF00180 Isocitrate/isopropylmalate dehydrogenase NMB96_00975 PF08241 Methyltransferase domain NMB96_00980 PF00694 Aconitase C-terminal domain NMB96_00985 PF00330 Aconitase family (aconitate hydratase) NMB96_00990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_00995 PF00990 Diguanylate cyclase, GGDEF domain NMB96_01010 PF02321 Outer membrane efflux protein NMB96_01020 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NMB96_01025 PF03279 Bacterial lipid A biosynthesis acyltransferase NMB96_01050 PF00390 Malic enzyme, N-terminal domain NMB96_01050 PF03949 Malic enzyme, NAD binding domain NMB96_01050 PF01515 Phosphate acetyl/butaryl transferase NMB96_01055 PF00375 Sodium:dicarboxylate symporter family NMB96_01065 PF00512 His Kinase A (phospho-acceptor) domain NMB96_01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_01075 PF07690 Major Facilitator Superfamily NMB96_01085 PF03466 LysR substrate binding domain NMB96_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_01090 PF00593 TonB dependent receptor NMB96_01090 PF07715 TonB-dependent Receptor Plug Domain NMB96_01095 PF00072 Response regulator receiver domain NMB96_01095 PF00196 Bacterial regulatory proteins, luxR family NMB96_01155 PF08521 Two-component sensor kinase N-terminal NMB96_01155 PF00512 His Kinase A (phospho-acceptor) domain NMB96_01155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_01160 PF00072 Response regulator receiver domain NMB96_01160 PF00486 Transcriptional regulatory protein, C terminal NMB96_01170 PF03600 Citrate transporter NMB96_01175 PF00106 short chain dehydrogenase NMB96_01180 PF00356 Bacterial regulatory proteins, lacI family NMB96_01195 PF00128 Alpha amylase, catalytic domain NMB96_01220 PF03193 RsgA GTPase NMB96_01225 PF02382 N-terminal domain in RTX protein NMB96_01225 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) NMB96_01225 PF03497 Anthrax toxin LF subunit NMB96_01225 PF06594 Haemolysin-type calcium binding protein related domain NMB96_01240 PF05598 Transposase domain (DUF772) NMB96_01285 PF00664 ABC transporter transmembrane region NMB96_01285 PF00005 ABC transporter NMB96_01285 PF03412 Peptidase C39 family NMB96_01290 PF00155 Aminotransferase class I and II NMB96_01310 PF01548 Transposase NMB96_01310 PF02371 Transposase IS116/IS110/IS902 family NMB96_01315 PF00593 TonB dependent receptor NMB96_01315 PF07715 TonB-dependent Receptor Plug Domain NMB96_01320 PF01522 Polysaccharide deacetylase NMB96_01325 PF00462 Glutaredoxin NMB96_01335 PF01979 Amidohydrolase family NMB96_01340 PF01979 Amidohydrolase family NMB96_01370 PF02645 Uncharacterised protein, DegV family COG1307 NMB96_01380 PF00892 EamA-like transporter family NMB96_01385 PF02567 Phenazine biosynthesis-like protein NMB96_01390 PF00155 Aminotransferase class I and II NMB96_01390 PF00392 Bacterial regulatory proteins, gntR family NMB96_01395 PF00756 Putative esterase NMB96_01400 PF04828 Glutathione-dependent formaldehyde-activating enzyme NMB96_01405 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_01405 PF00107 Zinc-binding dehydrogenase NMB96_01410 PF02583 Metal-sensitive transcriptional repressor NMB96_01415 PF13581 Histidine kinase-like ATPase domain NMB96_01415 PF13426 PAS domain NMB96_01415 PF07536 HWE histidine kinase NMB96_01440 PF00072 Response regulator receiver domain NMB96_01440 PF00486 Transcriptional regulatory protein, C terminal NMB96_01445 PF00672 HAMP domain NMB96_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_01445 PF00512 His Kinase A (phospho-acceptor) domain NMB96_01450 PF04107 Glutamate-cysteine ligase family 2(GCS2) NMB96_01455 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NMB96_01455 PF12833 Helix-turn-helix domain NMB96_01460 PF10996 Beta-Casp domain NMB96_01460 PF00753 Metallo-beta-lactamase superfamily NMB96_01460 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NMB96_01465 PF01926 50S ribosome-binding GTPase NMB96_01470 PF00034 Cytochrome c NMB96_01480 PF01323 DSBA-like thioredoxin domain NMB96_01490 PF02028 BCCT, betaine/carnitine/choline family transporter NMB96_01495 PF00171 Aldehyde dehydrogenase family NMB96_01500 PF05199 GMC oxidoreductase NMB96_01500 PF00732 GMC oxidoreductase NMB96_01510 PF07715 TonB-dependent Receptor Plug Domain NMB96_01510 PF00593 TonB dependent receptor NMB96_01515 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NMB96_01515 PF01464 Transglycosylase SLT domain NMB96_01520 PF01966 HD domain NMB96_01520 PF01743 Poly A polymerase head domain NMB96_01520 PF12627 Probable RNA and SrmB- binding site of polymerase A NMB96_01535 PF00005 ABC transporter NMB96_01535 PF00664 ABC transporter transmembrane region NMB96_01545 PF01979 Amidohydrolase family NMB96_01550 PF01380 SIS domain NMB96_01555 PF00356 Bacterial regulatory proteins, lacI family NMB96_01560 PF07690 Major Facilitator Superfamily NMB96_01565 PF00392 Bacterial regulatory proteins, gntR family NMB96_01565 PF07702 UTRA domain NMB96_01580 PF02837 Glycosyl hydrolases family 2, sugar binding domain NMB96_01580 PF16355 Domain of unknown function (DUF4982) NMB96_01580 PF00703 Glycosyl hydrolases family 2 NMB96_01580 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NMB96_01580 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NMB96_01605 PF03934 Type II secretion system (T2SS), protein K NMB96_01610 PF07963 Prokaryotic N-terminal methylation motif NMB96_01610 PF11612 Type II secretion system (T2SS), protein J NMB96_01615 PF07963 Prokaryotic N-terminal methylation motif NMB96_01615 PF02501 Type II secretion system (T2SS), protein I NMB96_01620 PF12019 Type II transport protein GspH NMB96_01620 PF07963 Prokaryotic N-terminal methylation motif NMB96_01625 PF07963 Prokaryotic N-terminal methylation motif NMB96_01625 PF08334 Type II secretion system (T2SS), protein G NMB96_01630 PF00482 Type II secretion system (T2SS), protein F NMB96_01635 PF00437 Type II/IV secretion system protein NMB96_01640 PF03958 Bacterial type II/III secretion system short domain NMB96_01640 PF00263 Bacterial type II and III secretion system protein NMB96_01680 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NMB96_01685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_01685 PF00512 His Kinase A (phospho-acceptor) domain NMB96_01690 PF00072 Response regulator receiver domain NMB96_01695 PF00360 Phytochrome region NMB96_01695 PF08446 PAS fold NMB96_01695 PF00512 His Kinase A (phospho-acceptor) domain NMB96_01695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_01695 PF01590 GAF domain NMB96_01700 PF04972 BON domain NMB96_01705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMB96_01705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMB96_01710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMB96_01710 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NMB96_01745 PF01467 Cytidylyltransferase-like NMB96_01745 PF00293 NUDIX domain NMB96_01755 PF03572 Peptidase family S41 NMB96_01755 PF00595 PDZ domain NMB96_01755 PF11818 C-terminal domain of tail specific protease (DUF3340) NMB96_01755 PF17804 Tail specific protease N-terminal domain NMB96_01760 PF04055 Radical SAM superfamily NMB96_01760 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NMB96_01765 PF03099 Biotin/lipoate A/B protein ligase family NMB96_01770 PF04359 Protein of unknown function (DUF493) NMB96_01780 PF00768 D-alanyl-D-alanine carboxypeptidase NMB96_01780 PF07943 Penicillin-binding protein 5, C-terminal domain NMB96_01785 PF03330 Lytic transglycolase NMB96_01785 PF05036 Sporulation related domain NMB96_01790 PF13406 Transglycosylase SLT domain NMB96_01795 PF00295 Glycosyl hydrolases family 28 NMB96_01820 PF02534 Type IV secretory system Conjugative DNA transfer NMB96_01825 PF01098 Cell cycle protein NMB96_01830 PF00905 Penicillin binding protein transpeptidase domain NMB96_01830 PF03717 Penicillin-binding Protein dimerisation domain NMB96_01835 PF04093 rod shape-determining protein MreD NMB96_01840 PF04085 rod shape-determining protein MreC NMB96_01850 PF00294 pfkB family carbohydrate kinase NMB96_01855 PF00158 Sigma-54 interaction domain NMB96_01855 PF02954 Bacterial regulatory protein, Fis family NMB96_01855 PF01590 GAF domain NMB96_01885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMB96_01885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMB96_01895 PF00483 Nucleotidyl transferase NMB96_01900 PF00733 Asparagine synthase NMB96_01900 PF13537 Glutamine amidotransferase domain NMB96_01905 PF00171 Aldehyde dehydrogenase family NMB96_01910 PF01925 Sulfite exporter TauE/SafE NMB96_01930 PF00107 Zinc-binding dehydrogenase NMB96_01930 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_01945 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMB96_01950 PF13360 PQQ-like domain NMB96_01965 PF11838 ERAP1-like C-terminal domain NMB96_01965 PF01433 Peptidase family M1 domain NMB96_01970 PF00563 EAL domain NMB96_01970 PF00990 Diguanylate cyclase, GGDEF domain NMB96_01970 PF03707 Bacterial signalling protein N terminal repeat NMB96_01975 PF01209 ubiE/COQ5 methyltransferase family NMB96_01985 PF13533 Biotin-lipoyl like NMB96_01990 PF13673 Acetyltransferase (GNAT) domain NMB96_02000 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NMB96_02000 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NMB96_02005 PF07724 AAA domain (Cdc48 subfamily) NMB96_02005 PF00004 ATPase family associated with various cellular activities (AAA) NMB96_02005 PF10431 C-terminal, D2-small domain, of ClpB protein NMB96_02010 PF00227 Proteasome subunit NMB96_02015 PF00589 Phage integrase family NMB96_02015 PF02899 Phage integrase, N-terminal SAM-like domain NMB96_02025 PF01678 Diaminopimelate epimerase NMB96_02035 PF04304 Protein of unknown function (DUF454) NMB96_02040 PF00326 Prolyl oligopeptidase family NMB96_02040 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NMB96_02045 PF00155 Aminotransferase class I and II NMB96_02055 PF00326 Prolyl oligopeptidase family NMB96_02055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NMB96_02080 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NMB96_02080 PF03900 Porphobilinogen deaminase, C-terminal domain NMB96_02085 PF04397 LytTr DNA-binding domain NMB96_02085 PF00072 Response regulator receiver domain NMB96_02090 PF06580 Histidine kinase NMB96_02090 PF07694 5TMR of 5TMR-LYT NMB96_02100 PF13632 Glycosyl transferase family group 2 NMB96_02115 PF00990 Diguanylate cyclase, GGDEF domain NMB96_02120 PF01740 STAS domain NMB96_02120 PF00916 Sulfate permease family NMB96_02125 PF00553 Cellulose binding domain NMB96_02125 PF00150 Cellulase (glycosyl hydrolase family 5) NMB96_02130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_02130 PF00672 HAMP domain NMB96_02130 PF02203 Tar ligand binding domain homologue NMB96_02160 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NMB96_02160 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMB96_02170 PF01204 Trehalase NMB96_02175 PF04616 Glycosyl hydrolases family 43 NMB96_02185 PF01544 CorA-like Mg2+ transporter protein NMB96_02190 PF00324 Amino acid permease NMB96_02195 PF03330 Lytic transglycolase NMB96_02205 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMB96_02210 PF00892 EamA-like transporter family NMB96_02235 PF00990 Diguanylate cyclase, GGDEF domain NMB96_02240 PF07759 Protein of unknown function (DUF1615) NMB96_02245 PF00326 Prolyl oligopeptidase family NMB96_02245 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NMB96_02280 PF13409 Glutathione S-transferase, N-terminal domain NMB96_02325 PF00326 Prolyl oligopeptidase family NMB96_02330 PF00593 TonB dependent receptor NMB96_02330 PF07715 TonB-dependent Receptor Plug Domain NMB96_02435 PF00145 C-5 cytosine-specific DNA methylase NMB96_02455 PF17831 Pyruvate dehydrogenase E1 component middle domain NMB96_02455 PF00456 Transketolase, thiamine diphosphate binding domain NMB96_02460 PF07745 Glycosyl hydrolase family 53 NMB96_02500 PF07729 FCD domain NMB96_02500 PF00392 Bacterial regulatory proteins, gntR family NMB96_02510 PF00550 Phosphopantetheine attachment site NMB96_02510 PF08659 KR domain NMB96_02510 PF00698 Acyl transferase domain NMB96_02510 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_02510 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_02510 PF16197 Ketoacyl-synthetase C-terminal extension NMB96_02515 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NMB96_02520 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NMB96_02530 PF01039 Carboxyl transferase domain NMB96_02535 PF06857 Malonate decarboxylase delta subunit (MdcD) NMB96_02540 PF16957 Malonate decarboxylase, alpha subunit, transporter NMB96_02560 PF04264 YceI-like domain NMB96_02565 PF00881 Nitroreductase family NMB96_02585 PF02592 Putative vitamin uptake transporter NMB96_02595 PF08335 GlnD PII-uridylyltransferase NMB96_02595 PF03710 Glutamate-ammonia ligase adenylyltransferase NMB96_02615 PF00593 TonB dependent receptor NMB96_02615 PF07660 Secretin and TonB N terminus short domain NMB96_02615 PF07715 TonB-dependent Receptor Plug Domain NMB96_02620 PF04773 FecR protein NMB96_02620 PF16220 Domain of unknown function (DUF4880) NMB96_02640 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NMB96_02640 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NMB96_02645 PF00793 DAHP synthetase I family NMB96_02650 PF07715 TonB-dependent Receptor Plug Domain NMB96_02650 PF00593 TonB dependent receptor NMB96_02655 PF01738 Dienelactone hydrolase family NMB96_02660 PF00118 TCP-1/cpn60 chaperonin family NMB96_02665 PF00166 Chaperonin 10 Kd subunit NMB96_02670 PF04231 Endonuclease I NMB96_02675 PF03091 CutA1 divalent ion tolerance protein NMB96_02680 PF11412 Disulphide bond corrector protein DsbC NMB96_02680 PF02683 Cytochrome C biogenesis protein transmembrane region NMB96_02695 PF01220 Dehydroquinase class II NMB96_02700 PF00364 Biotin-requiring enzyme NMB96_02705 PF00289 Biotin carboxylase, N-terminal domain NMB96_02705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMB96_02705 PF02785 Biotin carboxylase C-terminal domain NMB96_02730 PF01381 Helix-turn-helix NMB96_02740 PF02954 Bacterial regulatory protein, Fis family NMB96_02755 PF01808 AICARFT/IMPCHase bienzyme NMB96_02755 PF02142 MGS-like domain NMB96_02760 PF02843 Phosphoribosylglycinamide synthetase, C domain NMB96_02760 PF02844 Phosphoribosylglycinamide synthetase, N domain NMB96_02760 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NMB96_02765 PF12805 FUSC-like inner membrane protein yccS NMB96_02770 PF07690 Major Facilitator Superfamily NMB96_02775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_02775 PF03466 LysR substrate binding domain NMB96_02795 PF17113 Regulatory signalling modulator protein AmpE NMB96_02795 PF03186 CobD/Cbib protein NMB96_02800 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NMB96_02800 PF09297 NADH pyrophosphatase zinc ribbon domain NMB96_02800 PF00293 NUDIX domain NMB96_02810 PF01521 Iron-sulphur cluster biosynthesis NMB96_02830 PF00486 Transcriptional regulatory protein, C terminal NMB96_02830 PF00072 Response regulator receiver domain NMB96_02835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NMB96_02835 PF01627 Hpt domain NMB96_02835 PF00512 His Kinase A (phospho-acceptor) domain NMB96_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_02835 PF00672 HAMP domain NMB96_02835 PF00072 Response regulator receiver domain NMB96_02840 PF00210 Ferritin-like domain NMB96_02850 PF00293 NUDIX domain NMB96_02865 PF00380 Ribosomal protein S9/S16 NMB96_02870 PF00572 Ribosomal protein L13 NMB96_02875 PF03232 Ubiquinone biosynthesis protein COQ7 NMB96_02880 PF00893 Small Multidrug Resistance protein NMB96_02885 PF02675 S-adenosylmethionine decarboxylase NMB96_02890 PF00027 Cyclic nucleotide-binding domain NMB96_02890 PF00325 Bacterial regulatory proteins, crp family NMB96_02900 PF00218 Indole-3-glycerol phosphate synthase NMB96_02905 PF02885 Glycosyl transferase family, helical bundle domain NMB96_02905 PF00591 Glycosyl transferase family, a/b domain NMB96_02915 PF00117 Glutamine amidotransferase class-I NMB96_02950 PF01464 Transglycosylase SLT domain NMB96_02965 PF00263 Bacterial type II and III secretion system protein NMB96_02965 PF03958 Bacterial type II/III secretion system short domain NMB96_02980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMB96_02980 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMB96_02980 PF18269 T3SS EscN ATPase C-terminal domain NMB96_02995 PF01514 Secretory protein of YscJ/FliF family NMB96_03010 PF01312 FlhB HrpN YscU SpaS Family NMB96_03015 PF00771 FHIPEP family NMB96_03030 PF00813 FliP family NMB96_03035 PF01313 Bacterial export proteins, family 3 NMB96_03105 PF05819 NolX protein NMB96_03110 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NMB96_03110 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NMB96_03115 PF02798 Glutathione S-transferase, N-terminal domain NMB96_03115 PF00043 Glutathione S-transferase, C-terminal domain NMB96_03120 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_03120 PF08990 Erythronolide synthase docking NMB96_03120 PF16197 Ketoacyl-synthetase C-terminal extension NMB96_03120 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_03120 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_03120 PF08659 KR domain NMB96_03120 PF00550 Phosphopantetheine attachment site NMB96_03120 PF00698 Acyl transferase domain NMB96_03120 PF14765 Polyketide synthase dehydratase NMB96_03125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_03125 PF03466 LysR substrate binding domain NMB96_03130 PF00106 short chain dehydrogenase NMB96_03145 PF00258 Flavodoxin NMB96_03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_03150 PF03466 LysR substrate binding domain NMB96_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_03155 PF03466 LysR substrate binding domain NMB96_03170 PF04715 Anthranilate synthase component I, N terminal region NMB96_03170 PF00425 chorismate binding enzyme NMB96_03175 PF00781 Diacylglycerol kinase catalytic domain NMB96_03185 PF00834 Ribulose-phosphate 3 epimerase family NMB96_03195 PF00226 DnaJ domain NMB96_03195 PF05099 Tellurite resistance protein TerB NMB96_03200 PF01259 SAICAR synthetase NMB96_03220 PF00182 Chitinase class I NMB96_03225 PF01447 Thermolysin metallopeptidase, catalytic domain NMB96_03225 PF02868 Thermolysin metallopeptidase, alpha-helical domain NMB96_03225 PF01483 Proprotein convertase P-domain NMB96_03225 PF07504 Fungalysin/Thermolysin Propeptide Motif NMB96_03240 PF00361 Proton-conducting membrane transporter NMB96_03240 PF13244 Domain of unknown function (DUF4040) NMB96_03240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NMB96_03240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NMB96_03245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NMB96_03250 PF00361 Proton-conducting membrane transporter NMB96_03260 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NMB96_03265 PF03334 Na+/H+ antiporter subunit NMB96_03280 PF04209 homogentisate 1,2-dioxygenase NMB96_03285 PF04480 Protein of unknown function (DUF559) NMB96_03290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMB96_03295 PF01047 MarR family NMB96_03305 PF00854 POT family NMB96_03310 PF03301 Tryptophan 2,3-dioxygenase NMB96_03320 PF00676 Dehydrogenase E1 component NMB96_03325 PF02780 Transketolase, C-terminal domain NMB96_03325 PF02779 Transketolase, pyrimidine binding domain NMB96_03335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMB96_03335 PF00364 Biotin-requiring enzyme NMB96_03335 PF02817 e3 binding domain NMB96_03340 PF00270 DEAD/DEAH box helicase NMB96_03340 PF00271 Helicase conserved C-terminal domain NMB96_03350 PF00873 AcrB/AcrD/AcrF family NMB96_03360 PF00440 Bacterial regulatory proteins, tetR family NMB96_03365 PF02321 Outer membrane efflux protein NMB96_03370 PF06903 VirK protein NMB96_03375 PF06903 VirK protein NMB96_03400 PF13460 NAD(P)H-binding NMB96_03405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMB96_03405 PF00128 Alpha amylase, catalytic domain NMB96_03415 PF00128 Alpha amylase, catalytic domain NMB96_03420 PF02446 4-alpha-glucanotransferase NMB96_03425 PF11941 Domain of unknown function (DUF3459) NMB96_03425 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMB96_03425 PF00128 Alpha amylase, catalytic domain NMB96_03430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMB96_03430 PF02806 Alpha amylase, C-terminal all-beta domain NMB96_03430 PF00128 Alpha amylase, catalytic domain NMB96_03435 PF00534 Glycosyl transferases group 1 NMB96_03435 PF08323 Starch synthase catalytic domain NMB96_03440 PF00990 Diguanylate cyclase, GGDEF domain NMB96_03445 PF02638 Glycosyl hydrolase-like 10 NMB96_03450 PF05661 Protein of unknown function (DUF808) NMB96_03455 PF03109 ABC1 family NMB96_03460 PF00884 Sulfatase NMB96_03470 PF12794 Mechanosensitive ion channel inner membrane domain 1 NMB96_03470 PF12795 Mechanosensitive ion channel porin domain NMB96_03470 PF00924 Mechanosensitive ion channel NMB96_03490 PF01431 Peptidase family M13 NMB96_03490 PF05649 Peptidase family M13 NMB96_03500 PF13356 Arm DNA-binding domain NMB96_03500 PF00589 Phage integrase family NMB96_03505 PF13356 Arm DNA-binding domain NMB96_03505 PF00589 Phage integrase family NMB96_03515 PF01040 UbiA prenyltransferase family NMB96_03525 PF06968 Biotin and Thiamin Synthesis associated domain NMB96_03525 PF04055 Radical SAM superfamily NMB96_03530 PF00155 Aminotransferase class I and II NMB96_03540 PF12697 Alpha/beta hydrolase family NMB96_03550 PF13649 Methyltransferase domain NMB96_03575 PF00291 Pyridoxal-phosphate dependent enzyme NMB96_03585 PF13932 GidA associated domain NMB96_03585 PF01134 Glucose inhibited division protein A NMB96_03590 PF10677 Protein of unknown function (DUF2490) NMB96_03595 PF07859 alpha/beta hydrolase fold NMB96_03605 PF09339 IclR helix-turn-helix domain NMB96_03605 PF01614 Bacterial transcriptional regulator NMB96_03615 PF02627 Carboxymuconolactone decarboxylase family NMB96_03620 PF12146 Serine aminopeptidase, S33 NMB96_03625 PF10397 Adenylosuccinate lyase C-terminus NMB96_03625 PF00206 Lyase NMB96_03635 PF00775 Dioxygenase NMB96_03635 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NMB96_03640 PF02803 Thiolase, C-terminal domain NMB96_03640 PF00108 Thiolase, N-terminal domain NMB96_03645 PF01144 Coenzyme A transferase NMB96_03650 PF01144 Coenzyme A transferase NMB96_03655 PF00355 Rieske [2Fe-2S] domain NMB96_03665 PF00970 Oxidoreductase FAD-binding domain NMB96_03665 PF00111 2Fe-2S iron-sulfur cluster binding domain NMB96_03675 PF08220 DeoR-like helix-turn-helix domain NMB96_03675 PF00455 DeoR C terminal sensor domain NMB96_03680 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NMB96_03680 PF01266 FAD dependent oxidoreductase NMB96_03685 PF00230 Major intrinsic protein NMB96_03690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMB96_03690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMB96_03700 PF01494 FAD binding domain NMB96_03710 PF00171 Aldehyde dehydrogenase family NMB96_03730 PF11871 Domain of unknown function (DUF3391) NMB96_03730 PF01966 HD domain NMB96_03735 PF07690 Major Facilitator Superfamily NMB96_03740 PF00132 Bacterial transferase hexapeptide (six repeats) NMB96_03745 PF03692 Putative zinc- or iron-chelating domain NMB96_03750 PF00920 Dehydratase family NMB96_03775 PF00145 C-5 cytosine-specific DNA methylase NMB96_03780 PF00145 C-5 cytosine-specific DNA methylase NMB96_03855 PF00672 HAMP domain NMB96_03855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_03855 PF02203 Tar ligand binding domain homologue NMB96_03865 PF01638 HxlR-like helix-turn-helix NMB96_03870 PF05368 NmrA-like family NMB96_03880 PF08267 Cobalamin-independent synthase, N-terminal domain NMB96_03880 PF01717 Cobalamin-independent synthase, Catalytic domain NMB96_03890 PF03358 NADPH-dependent FMN reductase NMB96_03895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_03895 PF03466 LysR substrate binding domain NMB96_03900 PF02219 Methylenetetrahydrofolate reductase NMB96_03910 PF02321 Outer membrane efflux protein NMB96_03915 PF00873 AcrB/AcrD/AcrF family NMB96_03920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_03920 PF00529 HlyD membrane-fusion protein of T1SS NMB96_03925 PF00672 HAMP domain NMB96_03925 PF00512 His Kinase A (phospho-acceptor) domain NMB96_03925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_03930 PF00072 Response regulator receiver domain NMB96_03930 PF00486 Transcriptional regulatory protein, C terminal NMB96_03935 PF07690 Major Facilitator Superfamily NMB96_03940 PF00551 Formyl transferase NMB96_03950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMB96_03950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMB96_03955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMB96_03960 PF02146 Sir2 family NMB96_03990 PF07690 Major Facilitator Superfamily NMB96_03995 PF03466 LysR substrate binding domain NMB96_03995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_04010 PF01026 TatD related DNase NMB96_04015 PF03466 LysR substrate binding domain NMB96_04015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_04020 PF00355 Rieske [2Fe-2S] domain NMB96_04025 PF00111 2Fe-2S iron-sulfur cluster binding domain NMB96_04030 PF00860 Permease family NMB96_04040 PF01156 Inosine-uridine preferring nucleoside hydrolase NMB96_04045 PF01425 Amidase NMB96_04130 PF00561 alpha/beta hydrolase fold NMB96_04135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_04135 PF03466 LysR substrate binding domain NMB96_04140 PF07690 Major Facilitator Superfamily NMB96_04145 PF03466 LysR substrate binding domain NMB96_04145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_04150 PF07687 Peptidase dimerisation domain NMB96_04150 PF01546 Peptidase family M20/M25/M40 NMB96_04155 PF00266 Aminotransferase class-V NMB96_04170 PF09349 OHCU decarboxylase NMB96_04170 PF01014 Uricase NMB96_04175 PF13454 FAD-NAD(P)-binding NMB96_04180 PF00576 HIUase/Transthyretin family NMB96_04185 PF07308 Protein of unknown function (DUF1456) NMB96_04190 PF00672 HAMP domain NMB96_04190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_04190 PF02203 Tar ligand binding domain homologue NMB96_04195 PF00270 DEAD/DEAH box helicase NMB96_04195 PF04408 Helicase associated domain (HA2) NMB96_04195 PF00271 Helicase conserved C-terminal domain NMB96_04195 PF08482 ATP-dependent helicase C-terminal NMB96_04205 PF00849 RNA pseudouridylate synthase NMB96_04215 PF00248 Aldo/keto reductase family NMB96_04220 PF16884 N-terminal domain of oxidoreductase NMB96_04220 PF00107 Zinc-binding dehydrogenase NMB96_04225 PF00248 Aldo/keto reductase family NMB96_04245 PF12697 Alpha/beta hydrolase family NMB96_04250 PF02566 OsmC-like protein NMB96_04255 PF01047 MarR family NMB96_04265 PF03969 AFG1-like ATPase NMB96_04290 PF02492 CobW/HypB/UreG, nucleotide-binding domain NMB96_04290 PF07683 Cobalamin synthesis protein cobW C-terminal domain NMB96_04305 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NMB96_04345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_04345 PF02770 Acyl-CoA dehydrogenase, middle domain NMB96_04345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMB96_04350 PF01039 Carboxyl transferase domain NMB96_04355 PF02785 Biotin carboxylase C-terminal domain NMB96_04355 PF18140 Propionyl-coenzyme A carboxylase BT domain NMB96_04355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMB96_04355 PF00364 Biotin-requiring enzyme NMB96_04355 PF00289 Biotin carboxylase, N-terminal domain NMB96_04360 PF00326 Prolyl oligopeptidase family NMB96_04380 PF00990 Diguanylate cyclase, GGDEF domain NMB96_04385 PF00463 Isocitrate lyase family NMB96_04390 PF01274 Malate synthase NMB96_04395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_04395 PF03466 LysR substrate binding domain NMB96_04400 PF00999 Sodium/hydrogen exchanger family NMB96_04405 PF12833 Helix-turn-helix domain NMB96_04420 PF12706 Beta-lactamase superfamily domain NMB96_04430 PF01432 Peptidase family M3 NMB96_04435 PF01112 Asparaginase NMB96_04450 PF00472 RF-1 domain NMB96_04460 PF04287 tRNA pseudouridine synthase C NMB96_04460 PF00849 RNA pseudouridylate synthase NMB96_04470 PF03109 ABC1 family NMB96_04480 PF07478 D-ala D-ala ligase C-terminus NMB96_04480 PF01820 D-ala D-ala ligase N-terminus NMB96_04490 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NMB96_04500 PF00072 Response regulator receiver domain NMB96_04500 PF00486 Transcriptional regulatory protein, C terminal NMB96_04505 PF00501 AMP-binding enzyme NMB96_04510 PF03692 Putative zinc- or iron-chelating domain NMB96_04515 PF00561 alpha/beta hydrolase fold NMB96_04520 PF13784 Fic/DOC family N-terminal NMB96_04520 PF02661 Fic/DOC family NMB96_04525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMB96_04525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMB96_04540 PF00588 SpoU rRNA Methylase family NMB96_04550 PF07690 Major Facilitator Superfamily NMB96_04565 PF02954 Bacterial regulatory protein, Fis family NMB96_04565 PF00072 Response regulator receiver domain NMB96_04565 PF00158 Sigma-54 interaction domain NMB96_04570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_04570 PF00512 His Kinase A (phospho-acceptor) domain NMB96_04575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NMB96_04575 PF00205 Thiamine pyrophosphate enzyme, central domain NMB96_04575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NMB96_04585 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NMB96_04585 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NMB96_04590 PF02556 Preprotein translocase subunit SecB NMB96_04595 PF00581 Rhodanese-like domain NMB96_04630 PF02803 Thiolase, C-terminal domain NMB96_04630 PF00108 Thiolase, N-terminal domain NMB96_04640 PF00080 Copper/zinc superoxide dismutase (SODC) NMB96_04645 PF00080 Copper/zinc superoxide dismutase (SODC) NMB96_04650 PF02954 Bacterial regulatory protein, Fis family NMB96_04650 PF00072 Response regulator receiver domain NMB96_04650 PF00158 Sigma-54 interaction domain NMB96_04655 PF00512 His Kinase A (phospho-acceptor) domain NMB96_04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_04655 PF00989 PAS fold NMB96_04660 PF00909 Ammonium Transporter Family NMB96_04665 PF00543 Nitrogen regulatory protein P-II NMB96_04670 PF00120 Glutamine synthetase, catalytic domain NMB96_04670 PF03951 Glutamine synthetase, beta-Grasp domain NMB96_04675 PF02673 Bacitracin resistance protein BacA NMB96_04685 PF01161 Phosphatidylethanolamine-binding protein NMB96_04710 PF03061 Thioesterase superfamily NMB96_04715 PF13091 PLD-like domain NMB96_04730 PF10609 NUBPL iron-transfer P-loop NTPase NMB96_04730 PF01883 Iron-sulfur cluster assembly protein NMB96_04750 PF01381 Helix-turn-helix NMB96_04755 PF07804 HipA-like C-terminal domain NMB96_04755 PF13657 HipA N-terminal domain NMB96_04765 PF12867 DinB superfamily NMB96_04765 PF03781 Sulfatase-modifying factor enzyme 1 NMB96_04775 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_04780 PF00005 ABC transporter NMB96_04780 PF00571 CBS domain NMB96_04795 PF00005 ABC transporter NMB96_04800 PF01734 Patatin-like phospholipase NMB96_04805 PF00593 TonB dependent receptor NMB96_04805 PF07715 TonB-dependent Receptor Plug Domain NMB96_04805 PF07660 Secretin and TonB N terminus short domain NMB96_04810 PF01037 Lrp/AsnC ligand binding domain NMB96_04815 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NMB96_04840 PF00657 GDSL-like Lipase/Acylhydrolase NMB96_04860 PF04962 KduI/IolB family NMB96_04865 PF00356 Bacterial regulatory proteins, lacI family NMB96_04870 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NMB96_04870 PF04616 Glycosyl hydrolases family 43 NMB96_04875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NMB96_04885 PF03480 Bacterial extracellular solute-binding protein, family 7 NMB96_04895 PF07859 alpha/beta hydrolase fold NMB96_04895 PF13472 GDSL-like Lipase/Acylhydrolase family NMB96_04900 PF00135 Carboxylesterase family NMB96_04905 PF13472 GDSL-like Lipase/Acylhydrolase family NMB96_04915 PF00248 Aldo/keto reductase family NMB96_04950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMB96_04950 PF00128 Alpha amylase, catalytic domain NMB96_04950 PF02806 Alpha amylase, C-terminal all-beta domain NMB96_04955 PF16657 Maltogenic Amylase, C-terminal domain NMB96_04955 PF00128 Alpha amylase, catalytic domain NMB96_04960 PF00128 Alpha amylase, catalytic domain NMB96_04960 PF11896 Domain of unknown function (DUF3416) NMB96_04985 PF02540 NAD synthase NMB96_04985 PF00795 Carbon-nitrogen hydrolase NMB96_05085 PF01095 Pectinesterase NMB96_05095 PF07715 TonB-dependent Receptor Plug Domain NMB96_05095 PF00593 TonB dependent receptor NMB96_05100 PF00294 pfkB family carbohydrate kinase NMB96_05110 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NMB96_05110 PF07055 Enoyl reductase FAD binding domain NMB96_05110 PF12241 Trans-2-enoyl-CoA reductase catalytic region NMB96_05115 PF00486 Transcriptional regulatory protein, C terminal NMB96_05115 PF18500 CadC C-terminal domain 1 NMB96_05130 PF00196 Bacterial regulatory proteins, luxR family NMB96_05130 PF00072 Response regulator receiver domain NMB96_05135 PF07730 Histidine kinase NMB96_05140 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NMB96_05155 PF01070 FMN-dependent dehydrogenase NMB96_05165 PF01068 ATP dependent DNA ligase domain NMB96_05165 PF13298 DNA polymerase Ligase (LigD) NMB96_05165 PF04679 ATP dependent DNA ligase C terminal region NMB96_05170 PF02735 Ku70/Ku80 beta-barrel domain NMB96_05200 PF00171 Aldehyde dehydrogenase family NMB96_05215 PF07883 Cupin domain NMB96_05225 PF07715 TonB-dependent Receptor Plug Domain NMB96_05225 PF00593 TonB dependent receptor NMB96_05230 PF00155 Aminotransferase class I and II NMB96_05235 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NMB96_05285 PF07726 ATPase family associated with various cellular activities (AAA) NMB96_05285 PF17863 AAA lid domain NMB96_05325 PF08946 Osmosensory transporter coiled coil NMB96_05325 PF00083 Sugar (and other) transporter NMB96_05330 PF00085 Thioredoxin NMB96_05340 PF07859 alpha/beta hydrolase fold NMB96_05345 PF13344 Haloacid dehalogenase-like hydrolase NMB96_05345 PF00293 NUDIX domain NMB96_05355 PF01447 Thermolysin metallopeptidase, catalytic domain NMB96_05355 PF02868 Thermolysin metallopeptidase, alpha-helical domain NMB96_05355 PF16485 Protealysin propeptide NMB96_05375 PF00196 Bacterial regulatory proteins, luxR family NMB96_05375 PF00072 Response regulator receiver domain NMB96_05380 PF05532 CsbD-like NMB96_05385 PF04397 LytTr DNA-binding domain NMB96_05385 PF00072 Response regulator receiver domain NMB96_05390 PF06580 Histidine kinase NMB96_05390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_05390 PF07694 5TMR of 5TMR-LYT NMB96_05395 PF03781 Sulfatase-modifying factor enzyme 1 NMB96_05505 PF01638 HxlR-like helix-turn-helix NMB96_05520 PF03466 LysR substrate binding domain NMB96_05520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_05545 PF03006 Haemolysin-III related NMB96_05550 PF09369 Domain of unknown function (DUF1998) NMB96_05550 PF00271 Helicase conserved C-terminal domain NMB96_05550 PF00270 DEAD/DEAH box helicase NMB96_05615 PF01695 IstB-like ATP binding protein NMB96_05620 PF00665 Integrase core domain NMB96_05645 PF05394 Avirulence protein NMB96_05710 PF01804 Penicillin amidase NMB96_05720 PF06165 Glycosyltransferase family 36 NMB96_05720 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NMB96_05720 PF10091 Putative glucoamylase NMB96_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_05730 PF03466 LysR substrate binding domain NMB96_05735 PF02525 Flavodoxin-like fold NMB96_05740 PF02678 Pirin NMB96_05740 PF05726 Pirin C-terminal cupin domain NMB96_05780 PF00310 Glutamine amidotransferases class-II NMB96_05780 PF04898 Glutamate synthase central domain NMB96_05780 PF01645 Conserved region in glutamate synthase NMB96_05780 PF01493 GXGXG motif NMB96_05785 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_05785 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NMB96_05795 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_05795 PF00107 Zinc-binding dehydrogenase NMB96_05800 PF00150 Cellulase (glycosyl hydrolase family 5) NMB96_05805 PF00150 Cellulase (glycosyl hydrolase family 5) NMB96_05810 PF00150 Cellulase (glycosyl hydrolase family 5) NMB96_05815 PF00150 Cellulase (glycosyl hydrolase family 5) NMB96_05830 PF04389 Peptidase family M28 NMB96_05840 PF01551 Peptidase family M23 NMB96_05845 PF03572 Peptidase family S41 NMB96_05845 PF13180 PDZ domain NMB96_05850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMB96_05850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMB96_05865 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NMB96_05875 PF04055 Radical SAM superfamily NMB96_05880 PF13091 PLD-like domain NMB96_05880 PF13396 Phospholipase_D-nuclease N-terminal NMB96_05890 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NMB96_05900 PF02472 Biopolymer transport protein ExbD/TolR NMB96_05905 PF02472 Biopolymer transport protein ExbD/TolR NMB96_05910 PF01618 MotA/TolQ/ExbB proton channel family NMB96_05915 PF03544 Gram-negative bacterial TonB protein C-terminal NMB96_05925 PF01435 Peptidase family M48 NMB96_05935 PF18053 DNA gyrase B subunit insert domain NMB96_05935 PF01751 Toprim domain NMB96_05935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_05935 PF00204 DNA gyrase B NMB96_05935 PF00986 DNA gyrase B subunit, carboxyl terminus NMB96_05940 PF02463 RecF/RecN/SMC N terminal domain NMB96_05945 PF00712 DNA polymerase III beta subunit, N-terminal domain NMB96_05945 PF02767 DNA polymerase III beta subunit, central domain NMB96_05945 PF02768 DNA polymerase III beta subunit, C-terminal domain NMB96_05950 PF00308 Bacterial dnaA protein NMB96_05950 PF08299 Bacterial dnaA protein helix-turn-helix NMB96_05950 PF11638 DnaA N-terminal domain NMB96_05955 PF00468 Ribosomal protein L34 NMB96_05960 PF00825 Ribonuclease P NMB96_05965 PF02096 60Kd inner membrane protein NMB96_05965 PF14849 YidC periplasmic domain NMB96_05970 PF01926 50S ribosome-binding GTPase NMB96_05970 PF10396 GTP-binding protein TrmE N-terminus NMB96_05970 PF12631 MnmE helical domain NMB96_05975 PF01569 PAP2 superfamily NMB96_05990 PF03009 Glycerophosphoryl diester phosphodiesterase family NMB96_05995 PF01694 Rhomboid family NMB96_06000 PF03741 Integral membrane protein TerC family NMB96_06005 PF10672 S-adenosylmethionine-dependent methyltransferase NMB96_06005 PF17785 PUA-like domain NMB96_06030 PF07715 TonB-dependent Receptor Plug Domain NMB96_06030 PF00593 TonB dependent receptor NMB96_06035 PF01804 Penicillin amidase NMB96_06050 PF07690 Major Facilitator Superfamily NMB96_06055 PF02595 Glycerate kinase family NMB96_06060 PF13556 PucR C-terminal helix-turn-helix domain NMB96_06060 PF17853 GGDEF-like domain NMB96_06060 PF05651 Putative sugar diacid recognition NMB96_06065 PF00990 Diguanylate cyclase, GGDEF domain NMB96_06075 PF07971 Glycosyl hydrolase family 92 NMB96_06075 PF17678 Glycosyl hydrolase family 92 N-terminal domain NMB96_06080 PF13520 Amino acid permease NMB96_06085 PF00043 Glutathione S-transferase, C-terminal domain NMB96_06085 PF13417 Glutathione S-transferase, N-terminal domain NMB96_06090 PF02646 RmuC family NMB96_06100 PF00255 Glutathione peroxidase NMB96_06110 PF05199 GMC oxidoreductase NMB96_06110 PF00732 GMC oxidoreductase NMB96_06120 PF04333 MlaA lipoprotein NMB96_06130 PF05494 MlaC protein NMB96_06135 PF02470 MlaD protein NMB96_06140 PF02405 Permease MlaE NMB96_06145 PF00005 ABC transporter NMB96_06180 PF17946 RecC C-terminal domain NMB96_06185 PF12705 PD-(D/E)XK nuclease superfamily NMB96_06185 PF00580 UvrD/REP helicase N-terminal domain NMB96_06185 PF13361 UvrD-like helicase C-terminal domain NMB96_06190 PF13538 UvrD-like helicase C-terminal domain NMB96_06210 PF09386 Antitoxin ParD NMB96_06255 PF03377 TAL effector repeat NMB96_06275 PF01609 Transposase DDE domain NMB96_06275 PF05598 Transposase domain (DUF772) NMB96_06280 PF02796 Helix-turn-helix domain of resolvase NMB96_06280 PF00239 Resolvase, N terminal domain NMB96_06305 PF03377 TAL effector repeat NMB96_06310 PF01609 Transposase DDE domain NMB96_06310 PF05598 Transposase domain (DUF772) NMB96_06325 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB NMB96_06330 PF01381 Helix-turn-helix NMB96_06370 PF13614 AAA domain NMB96_06475 PF01850 PIN domain NMB96_06500 PF13091 PLD-like domain NMB96_06500 PF13396 Phospholipase_D-nuclease N-terminal NMB96_06515 PF00106 short chain dehydrogenase NMB96_06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_06520 PF03466 LysR substrate binding domain NMB96_06525 PF00083 Sugar (and other) transporter NMB96_06530 PF04632 Fusaric acid resistance protein family NMB96_06535 PF02321 Outer membrane efflux protein NMB96_06540 PF00529 HlyD membrane-fusion protein of T1SS NMB96_06540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_06545 PF07869 Protein of unknown function (DUF1656) NMB96_06555 PF01227 GTP cyclohydrolase I NMB96_06575 PF07715 TonB-dependent Receptor Plug Domain NMB96_06575 PF00593 TonB dependent receptor NMB96_06580 PF01925 Sulfite exporter TauE/SafE NMB96_06585 PF02810 SEC-C motif NMB96_06595 PF01263 Aldose 1-epimerase NMB96_06600 PF07690 Major Facilitator Superfamily NMB96_06605 PF01126 Heme oxygenase NMB96_06610 PF08446 PAS fold NMB96_06610 PF13426 PAS domain NMB96_06610 PF00360 Phytochrome region NMB96_06610 PF01590 GAF domain NMB96_06615 PF03594 Benzoate membrane transport protein NMB96_06645 PF06827 Zinc finger found in FPG and IleRS NMB96_06645 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NMB96_06645 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NMB96_06655 PF04349 Periplasmic glucan biosynthesis protein, MdoG NMB96_06660 PF01590 GAF domain NMB96_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_06660 PF00512 His Kinase A (phospho-acceptor) domain NMB96_06660 PF00360 Phytochrome region NMB96_06660 PF08446 PAS fold NMB96_06665 PF00265 Thymidine kinase NMB96_06670 PF00580 UvrD/REP helicase N-terminal domain NMB96_06670 PF13361 UvrD-like helicase C-terminal domain NMB96_06690 PF04337 Protein of unknown function, DUF480 NMB96_06695 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NMB96_06700 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NMB96_06705 PF04820 Tryptophan halogenase NMB96_06720 PF00356 Bacterial regulatory proteins, lacI family NMB96_06730 PF01553 Acyltransferase NMB96_06735 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_06735 PF00698 Acyl transferase domain NMB96_06735 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_06735 PF00107 Zinc-binding dehydrogenase NMB96_06735 PF16197 Ketoacyl-synthetase C-terminal extension NMB96_06735 PF14765 Polyketide synthase dehydratase NMB96_06735 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_06735 PF08659 KR domain NMB96_06735 PF00550 Phosphopantetheine attachment site NMB96_06790 PF04616 Glycosyl hydrolases family 43 NMB96_06810 PF00331 Glycosyl hydrolase family 10 NMB96_06810 PF03422 Carbohydrate binding module (family 6) NMB96_06810 PF00553 Cellulose binding domain NMB96_06815 PF02614 Glucuronate isomerase NMB96_06820 PF16355 Domain of unknown function (DUF4982) NMB96_06820 PF02837 Glycosyl hydrolases family 2, sugar binding domain NMB96_06820 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NMB96_06820 PF00703 Glycosyl hydrolases family 2 NMB96_06820 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NMB96_06825 PF00331 Glycosyl hydrolase family 10 NMB96_06830 PF08450 SMP-30/Gluconolactonase/LRE-like region NMB96_06845 PF02652 L-lactate permease NMB96_06850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMB96_06850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMB96_06880 PF01232 Mannitol dehydrogenase Rossmann domain NMB96_06880 PF08125 Mannitol dehydrogenase C-terminal domain NMB96_06885 PF14310 Fibronectin type III-like domain NMB96_06885 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_06885 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMB96_06885 PF07691 PA14 domain NMB96_06890 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NMB96_06890 PF04616 Glycosyl hydrolases family 43 NMB96_06895 PF13378 Enolase C-terminal domain-like NMB96_06895 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMB96_06905 PF03648 Glycosyl hydrolase family 67 N-terminus NMB96_06905 PF07488 Glycosyl hydrolase family 67 middle domain NMB96_06905 PF07477 Glycosyl hydrolase family 67 C-terminus NMB96_06910 PF00356 Bacterial regulatory proteins, lacI family NMB96_06920 PF01171 PP-loop family NMB96_06925 PF04381 Putative exonuclease, RdgC NMB96_06935 PF12697 Alpha/beta hydrolase family NMB96_06940 PF00762 Ferrochelatase NMB96_06950 PF02416 mttA/Hcf106 family NMB96_06955 PF02416 mttA/Hcf106 family NMB96_06960 PF00902 Sec-independent protein translocase protein (TatC) NMB96_06970 PF00117 Glutamine amidotransferase class-I NMB96_06970 PF00958 GMP synthase C terminal domain NMB96_06980 PF00437 Type II/IV secretion system protein NMB96_06980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NMB96_06985 PF02091 Glycyl-tRNA synthetase alpha subunit NMB96_06990 PF02092 Glycyl-tRNA synthetase beta subunit NMB96_06990 PF05746 DALR anticodon binding domain NMB96_06995 PF13181 Tetratricopeptide repeat NMB96_07000 PF07715 TonB-dependent Receptor Plug Domain NMB96_07000 PF00593 TonB dependent receptor NMB96_07005 PF01103 Surface antigen NMB96_07005 PF17243 POTRA domain TamA domain 1 NMB96_07010 PF04357 TamB, inner membrane protein subunit of TAM complex NMB96_07030 PF01011 PQQ enzyme repeat NMB96_07030 PF13360 PQQ-like domain NMB96_07030 PF13570 PQQ-like domain NMB96_07045 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NMB96_07045 PF06165 Glycosyltransferase family 36 NMB96_07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_07050 PF00512 His Kinase A (phospho-acceptor) domain NMB96_07055 PF02659 Putative manganese efflux pump NMB96_07070 PF09339 IclR helix-turn-helix domain NMB96_07070 PF01614 Bacterial transcriptional regulator NMB96_07075 PF07690 Major Facilitator Superfamily NMB96_07080 PF05336 L-rhamnose mutarotase NMB96_07085 PF13378 Enolase C-terminal domain-like NMB96_07085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMB96_07090 PF01557 Fumarylacetoacetate (FAA) hydrolase family NMB96_07105 PF00248 Aldo/keto reductase family NMB96_07130 PF00196 Bacterial regulatory proteins, luxR family NMB96_07130 PF00072 Response regulator receiver domain NMB96_07135 PF16177 Acetyl-coenzyme A synthetase N-terminus NMB96_07135 PF00501 AMP-binding enzyme NMB96_07135 PF13193 AMP-binding enzyme C-terminal domain NMB96_07145 PF04341 Protein of unknown function, DUF485 NMB96_07150 PF00474 Sodium:solute symporter family NMB96_07160 PF00639 PPIC-type PPIASE domain NMB96_07160 PF09312 SurA N-terminal domain NMB96_07170 PF00480 ROK family NMB96_07185 PF03372 Endonuclease/Exonuclease/phosphatase family NMB96_07195 PF04226 Transglycosylase associated protein NMB96_07200 PF01648 4'-phosphopantetheinyl transferase superfamily NMB96_07205 PF09423 PhoD-like phosphatase NMB96_07205 PF16655 PhoD-like phosphatase, N-terminal domain NMB96_07225 PF04222 Protein of unknown function (DUF416) NMB96_07260 PF09423 PhoD-like phosphatase NMB96_07260 PF16655 PhoD-like phosphatase, N-terminal domain NMB96_07265 PF02527 rRNA small subunit methyltransferase G NMB96_07285 PF13533 Biotin-lipoyl like NMB96_07290 PF00873 AcrB/AcrD/AcrF family NMB96_07300 PF00830 Ribosomal L28 family NMB96_07305 PF00471 Ribosomal protein L33 NMB96_07310 PF04909 Amidohydrolase NMB96_07315 PF04303 PrpF protein NMB96_07320 PF03737 Aldolase/RraA NMB96_07325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_07325 PF03466 LysR substrate binding domain NMB96_07330 PF13396 Phospholipase_D-nuclease N-terminal NMB96_07330 PF13091 PLD-like domain NMB96_07345 PF00580 UvrD/REP helicase N-terminal domain NMB96_07345 PF13361 UvrD-like helicase C-terminal domain NMB96_07365 PF01734 Patatin-like phospholipase NMB96_07405 PF00069 Protein kinase domain NMB96_07405 PF03793 PASTA domain NMB96_07415 PF01367 5'-3' exonuclease, C-terminal SAM fold NMB96_07415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NMB96_07415 PF01612 3'-5' exonuclease NMB96_07415 PF00476 DNA polymerase family A NMB96_07420 PF01218 Coproporphyrinogen III oxidase NMB96_07445 PF00501 AMP-binding enzyme NMB96_07445 PF13193 AMP-binding enzyme C-terminal domain NMB96_07460 PF04820 Tryptophan halogenase NMB96_07465 PF00550 Phosphopantetheine attachment site NMB96_07475 PF01553 Acyltransferase NMB96_07515 PF01548 Transposase NMB96_07515 PF02371 Transposase IS116/IS110/IS902 family NMB96_07520 PF04820 Tryptophan halogenase NMB96_07525 PF00535 Glycosyl transferase family 2 NMB96_07535 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_07535 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_07540 PF05166 YcgL domain NMB96_07550 PF00723 Glycosyl hydrolases family 15 NMB96_07555 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NMB96_07555 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NMB96_07560 PF00999 Sodium/hydrogen exchanger family NMB96_07560 PF02254 TrkA-N domain NMB96_07565 PF00571 CBS domain NMB96_07565 PF01769 Divalent cation transporter NMB96_07565 PF03448 MgtE intracellular N domain NMB96_07570 PF07715 TonB-dependent Receptor Plug Domain NMB96_07570 PF00593 TonB dependent receptor NMB96_07570 PF04886 PT repeat NMB96_07585 PF13380 CoA binding domain NMB96_07585 PF00583 Acetyltransferase (GNAT) family NMB96_07585 PF13607 Succinyl-CoA ligase like flavodoxin domain NMB96_07595 PF00317 Ribonucleotide reductase, all-alpha domain NMB96_07595 PF02867 Ribonucleotide reductase, barrel domain NMB96_07595 PF03477 ATP cone domain NMB96_07600 PF00268 Ribonucleotide reductase, small chain NMB96_07615 PF03061 Thioesterase superfamily NMB96_07630 PF08546 Ketopantoate reductase PanE/ApbA C terminal NMB96_07630 PF02558 Ketopantoate reductase PanE/ApbA NMB96_07640 PF01061 ABC-2 type transporter NMB96_07645 PF00005 ABC transporter NMB96_07650 PF00970 Oxidoreductase FAD-binding domain NMB96_07650 PF00111 2Fe-2S iron-sulfur cluster binding domain NMB96_07650 PF00175 Oxidoreductase NAD-binding domain NMB96_07655 PF01965 DJ-1/PfpI family NMB96_07655 PF12833 Helix-turn-helix domain NMB96_07660 PF07715 TonB-dependent Receptor Plug Domain NMB96_07660 PF00593 TonB dependent receptor NMB96_07670 PF01545 Cation efflux family NMB96_07675 PF02583 Metal-sensitive transcriptional repressor NMB96_07680 PF01229 Glycosyl hydrolases family 39 NMB96_07690 PF01381 Helix-turn-helix NMB96_07695 PF00561 alpha/beta hydrolase fold NMB96_07700 PF00005 ABC transporter NMB96_07715 PF04820 Tryptophan halogenase NMB96_07735 PF00043 Glutathione S-transferase, C-terminal domain NMB96_07735 PF02798 Glutathione S-transferase, N-terminal domain NMB96_07740 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NMB96_07740 PF00326 Prolyl oligopeptidase family NMB96_07770 PF00490 Delta-aminolevulinic acid dehydratase NMB96_07775 PF00258 Flavodoxin NMB96_07775 PF00175 Oxidoreductase NAD-binding domain NMB96_07775 PF00667 FAD binding domain NMB96_07785 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NMB96_07785 PF01488 Shikimate / quinate 5-dehydrogenase NMB96_07785 PF08501 Shikimate dehydrogenase substrate binding domain NMB96_07800 PF06733 DEAD_2 NMB96_07800 PF13307 Helicase C-terminal domain NMB96_07805 PF00529 HlyD membrane-fusion protein of T1SS NMB96_07805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_07810 PF00664 ABC transporter transmembrane region NMB96_07810 PF00005 ABC transporter NMB96_07810 PF03412 Peptidase C39 family NMB96_07830 PF00199 Catalase NMB96_07830 PF06628 Catalase-related immune-responsive NMB96_07845 PF01207 Dihydrouridine synthase (Dus) NMB96_07855 PF00072 Response regulator receiver domain NMB96_07855 PF00486 Transcriptional regulatory protein, C terminal NMB96_07860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_07875 PF06167 Glucose-regulated metallo-peptidase M90 NMB96_07885 PF03099 Biotin/lipoate A/B protein ligase family NMB96_07885 PF02237 Biotin protein ligase C terminal domain NMB96_07885 PF08279 HTH domain NMB96_07890 PF03309 Type III pantothenate kinase NMB96_07905 PF02223 Thymidylate kinase NMB96_07930 PF00491 Arginase family NMB96_07945 PF05532 CsbD-like NMB96_07950 PF00579 tRNA synthetases class I (W and Y) NMB96_07955 PF00753 Metallo-beta-lactamase superfamily NMB96_07975 PF00892 EamA-like transporter family NMB96_07980 PF00892 EamA-like transporter family NMB96_08000 PF00005 ABC transporter NMB96_08005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_08015 PF00196 Bacterial regulatory proteins, luxR family NMB96_08015 PF00072 Response regulator receiver domain NMB96_08035 PF00883 Cytosol aminopeptidase family, catalytic domain NMB96_08035 PF02789 Cytosol aminopeptidase family, N-terminal domain NMB96_08040 PF13419 Haloacid dehalogenase-like hydrolase NMB96_08045 PF01594 AI-2E family transporter NMB96_08065 PF13180 PDZ domain NMB96_08065 PF00595 PDZ domain NMB96_08085 PF00512 His Kinase A (phospho-acceptor) domain NMB96_08085 PF08521 Two-component sensor kinase N-terminal NMB96_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_08090 PF00486 Transcriptional regulatory protein, C terminal NMB96_08090 PF00072 Response regulator receiver domain NMB96_08095 PF01370 NAD dependent epimerase/dehydratase family NMB96_08095 PF08338 Domain of unknown function (DUF1731) NMB96_08135 PF00440 Bacterial regulatory proteins, tetR family NMB96_08140 PF00175 Oxidoreductase NAD-binding domain NMB96_08140 PF00111 2Fe-2S iron-sulfur cluster binding domain NMB96_08140 PF00970 Oxidoreductase FAD-binding domain NMB96_08145 PF00487 Fatty acid desaturase NMB96_08150 PF00563 EAL domain NMB96_08150 PF12792 CSS motif domain associated with EAL NMB96_08165 PF01078 Magnesium chelatase, subunit ChlI NMB96_08165 PF13335 Magnesium chelatase, subunit ChlI C-terminal NMB96_08170 PF04380 Membrane fusogenic activity NMB96_08175 PF00543 Nitrogen regulatory protein P-II NMB96_08200 PF17284 Spermidine synthase tetramerisation domain NMB96_08205 PF17810 Arginine decarboxylase helical bundle domain NMB96_08205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NMB96_08205 PF17944 Arginine decarboxylase C-terminal helical extension NMB96_08210 PF00668 Condensation domain NMB96_08210 PF00975 Thioesterase domain NMB96_08210 PF13193 AMP-binding enzyme C-terminal domain NMB96_08210 PF00550 Phosphopantetheine attachment site NMB96_08210 PF00501 AMP-binding enzyme NMB96_08215 PF03033 Glycosyltransferase family 28 N-terminal domain NMB96_08220 PF01757 Acyltransferase family NMB96_08225 PF00106 short chain dehydrogenase NMB96_08235 PF00750 tRNA synthetases class I (R) NMB96_08235 PF03485 Arginyl tRNA synthetase N terminal domain NMB96_08235 PF05746 DALR anticodon binding domain NMB96_08240 PF04002 RadC-like JAB domain NMB96_08245 PF04127 DNA / pantothenate metabolism flavoprotein NMB96_08245 PF02441 Flavoprotein NMB96_08250 PF00692 dUTPase NMB96_08255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMB96_08255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMB96_08255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMB96_08255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMB96_08270 PF00535 Glycosyl transferase family 2 NMB96_08275 PF01370 NAD dependent epimerase/dehydratase family NMB96_08285 PF17762 HTH domain found in ParB protein NMB96_08285 PF02195 ParB-like nuclease domain NMB96_08290 PF13614 AAA domain NMB96_08300 PF00156 Phosphoribosyl transferase domain NMB96_08305 PF03372 Endonuclease/Exonuclease/phosphatase family NMB96_08310 PF07690 Major Facilitator Superfamily NMB96_08320 PF03702 Anhydro-N-acetylmuramic acid kinase NMB96_08325 PF04225 Opacity-associated protein A LysM-like domain NMB96_08325 PF01551 Peptidase family M23 NMB96_08330 PF00579 tRNA synthetases class I (W and Y) NMB96_08360 PF00171 Aldehyde dehydrogenase family NMB96_08360 PF01619 Proline dehydrogenase NMB96_08360 PF14850 DNA-binding domain of Proline dehydrogenase NMB96_08360 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NMB96_08370 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NMB96_08370 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NMB96_08375 PF00115 Cytochrome C and Quinol oxidase polypeptide I NMB96_08385 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NMB96_08390 PF00510 Cytochrome c oxidase subunit III NMB96_08415 PF01040 UbiA prenyltransferase family NMB96_08425 PF13593 SBF-like CPA transporter family (DUF4137) NMB96_08430 PF01807 CHC2 zinc finger NMB96_08430 PF08275 DNA primase catalytic core, N-terminal domain NMB96_08430 PF08278 DNA primase DnaG DnaB-binding NMB96_08430 PF10410 DnaB-helicase binding domain of primase NMB96_08435 PF03631 Virulence factor BrkB NMB96_08440 PF09424 Yqey-like protein NMB96_08445 PF01165 Ribosomal protein S21 NMB96_08450 PF00814 Glycoprotease family NMB96_08455 PF02152 Dihydroneopterin aldolase NMB96_08460 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_08460 PF14310 Fibronectin type III-like domain NMB96_08460 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMB96_08470 PF07995 Glucose / Sorbosone dehydrogenase NMB96_08475 PF05360 yiaA/B two helix domain NMB96_08490 PF13520 Amino acid permease NMB96_08500 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMB96_08500 PF13378 Enolase C-terminal domain-like NMB96_08510 PF01510 N-acetylmuramoyl-L-alanine amidase NMB96_08515 PF01427 D-ala-D-ala dipeptidase NMB96_08550 PF07063 Domain of unknown function (DUF1338) NMB96_08555 PF00873 AcrB/AcrD/AcrF family NMB96_08560 PF00873 AcrB/AcrD/AcrF family NMB96_08565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_08570 PF07687 Peptidase dimerisation domain NMB96_08570 PF01546 Peptidase family M20/M25/M40 NMB96_08575 PF14489 QueF-like protein NMB96_08575 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NMB96_08580 PF01476 LysM domain NMB96_08580 PF00756 Putative esterase NMB96_08590 PF03971 Monomeric isocitrate dehydrogenase NMB96_08595 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NMB96_08630 PF07497 Rho termination factor, RNA-binding domain NMB96_08630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMB96_08630 PF07498 Rho termination factor, N-terminal domain NMB96_08635 PF00085 Thioredoxin NMB96_08640 PF00270 DEAD/DEAH box helicase NMB96_08640 PF00271 Helicase conserved C-terminal domain NMB96_08640 PF12300 ATP-dependent RNA helicase RhlB NMB96_08645 PF00005 ABC transporter NMB96_08650 PF18075 FtsX extracellular domain NMB96_08655 PF01339 CheB methylesterase NMB96_08655 PF00072 Response regulator receiver domain NMB96_08660 PF03167 Uracil DNA glycosylase superfamily NMB96_08665 PF04545 Sigma-70, region 4 NMB96_08665 PF04542 Sigma-70 region 2 NMB96_08670 PF03458 UPF0126 domain NMB96_08675 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_08690 PF13417 Glutathione S-transferase, N-terminal domain NMB96_08690 PF00043 Glutathione S-transferase, C-terminal domain NMB96_08695 PF18074 Primosomal protein N C-terminal domain NMB96_08695 PF17764 3′ DNA-binding domain (3′BD) NMB96_08695 PF00271 Helicase conserved C-terminal domain NMB96_08695 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NMB96_08695 PF00270 DEAD/DEAH box helicase NMB96_08710 PF01554 MatE NMB96_08715 PF01343 Peptidase family S49 NMB96_08740 PF01300 Telomere recombination NMB96_08745 PF01131 DNA topoisomerase NMB96_08745 PF01751 Toprim domain NMB96_08745 PF13368 Topoisomerase C-terminal repeat NMB96_08755 PF07963 Prokaryotic N-terminal methylation motif NMB96_08755 PF00114 Pilin (bacterial filament) NMB96_08760 PF04361 Protein of unknown function (DUF494) NMB96_08765 PF17782 DprA winged helix domain NMB96_08765 PF02481 DNA recombination-mediator protein A NMB96_08770 PF01476 LysM domain NMB96_08775 PF01327 Polypeptide deformylase NMB96_08780 PF02911 Formyl transferase, C-terminal domain NMB96_08780 PF00551 Formyl transferase NMB96_08785 PF01189 16S rRNA methyltransferase RsmB/F NMB96_08785 PF01029 NusB family NMB96_08800 PF00535 Glycosyl transferase family 2 NMB96_08820 PF00925 GTP cyclohydrolase II NMB96_08830 PF03279 Bacterial lipid A biosynthesis acyltransferase NMB96_08835 PF02580 D-Tyr-tRNA(Tyr) deacylase NMB96_08840 PF04545 Sigma-70, region 4 NMB96_08840 PF04542 Sigma-70 region 2 NMB96_08840 PF04546 Sigma-70, non-essential region NMB96_08840 PF00140 Sigma-70 factor, region 1.2 NMB96_08840 PF04539 Sigma-70 region 3 NMB96_08840 PF03979 Sigma-70 factor, region 1.1 NMB96_08855 PF00589 Phage integrase family NMB96_08855 PF13356 Arm DNA-binding domain NMB96_08860 PF05394 Avirulence protein NMB96_08875 PF00665 Integrase core domain NMB96_08880 PF01695 IstB-like ATP binding protein NMB96_08935 PF01936 NYN domain NMB96_08935 PF09722 Protein of unknown function (DUF2384) NMB96_08950 PF00239 Resolvase, N terminal domain NMB96_08950 PF02796 Helix-turn-helix domain of resolvase NMB96_08955 PF05394 Avirulence protein NMB96_08970 PF00665 Integrase core domain NMB96_08975 PF01695 IstB-like ATP binding protein NMB96_08995 PF00270 DEAD/DEAH box helicase NMB96_08995 PF00271 Helicase conserved C-terminal domain NMB96_08995 PF17191 RecG wedge domain NMB96_09015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_09015 PF00672 HAMP domain NMB96_09015 PF02203 Tar ligand binding domain homologue NMB96_09035 PF01042 Endoribonuclease L-PSP NMB96_09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_09040 PF03466 LysR substrate binding domain NMB96_09050 PF00005 ABC transporter NMB96_09065 PF00593 TonB dependent receptor NMB96_09065 PF07715 TonB-dependent Receptor Plug Domain NMB96_09090 PF07690 Major Facilitator Superfamily NMB96_09095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_09095 PF03466 LysR substrate binding domain NMB96_09120 PF13823 Alcohol dehydrogenase GroES-associated NMB96_09120 PF00107 Zinc-binding dehydrogenase NMB96_09120 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_09135 PF01654 Cytochrome bd terminal oxidase subunit I NMB96_09140 PF02322 Cytochrome bd terminal oxidase subunit II NMB96_09160 PF02954 Bacterial regulatory protein, Fis family NMB96_09160 PF00072 Response regulator receiver domain NMB96_09160 PF00158 Sigma-54 interaction domain NMB96_09180 PF05067 Manganese containing catalase NMB96_09185 PF05974 Domain of unknown function (DUF892) NMB96_09210 PF06580 Histidine kinase NMB96_09210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_09210 PF00672 HAMP domain NMB96_09210 PF02743 Cache domain NMB96_09215 PF00072 Response regulator receiver domain NMB96_09215 PF04397 LytTr DNA-binding domain NMB96_09225 PF13520 Amino acid permease NMB96_09240 PF05649 Peptidase family M13 NMB96_09240 PF01431 Peptidase family M13 NMB96_09250 PF00248 Aldo/keto reductase family NMB96_09255 PF03358 NADPH-dependent FMN reductase NMB96_09260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_09260 PF03466 LysR substrate binding domain NMB96_09270 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NMB96_09280 PF03167 Uracil DNA glycosylase superfamily NMB96_09285 PF02469 Fasciclin domain NMB96_09295 PF00999 Sodium/hydrogen exchanger family NMB96_09300 PF00005 ABC transporter NMB96_09305 PF01061 ABC-2 type transporter NMB96_09330 PF13677 Membrane MotB of proton-channel complex MotA/MotB NMB96_09330 PF00691 OmpA family NMB96_09335 PF01618 MotA/TolQ/ExbB proton channel family NMB96_09350 PF01641 SelR domain NMB96_09360 PF01037 Lrp/AsnC ligand binding domain NMB96_09365 PF01266 FAD dependent oxidoreductase NMB96_09370 PF00842 Alanine racemase, C-terminal domain NMB96_09370 PF01168 Alanine racemase, N-terminal domain NMB96_09390 PF00072 Response regulator receiver domain NMB96_09390 PF00497 Bacterial extracellular solute-binding proteins, family 3 NMB96_09390 PF00512 His Kinase A (phospho-acceptor) domain NMB96_09390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_09400 PF07995 Glucose / Sorbosone dehydrogenase NMB96_09410 PF08468 Methyltransferase small domain N-terminal NMB96_09410 PF05175 Methyltransferase small domain NMB96_09415 PF00849 RNA pseudouridylate synthase NMB96_09415 PF01479 S4 domain NMB96_09435 PF04461 Protein of unknown function (DUF520) NMB96_09440 PF00892 EamA-like transporter family NMB96_09445 PF00005 ABC transporter NMB96_09445 PF09383 NIL domain NMB96_09450 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_09455 PF03180 NLPA lipoprotein NMB96_09480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMB96_09480 PF00364 Biotin-requiring enzyme NMB96_09480 PF02817 e3 binding domain NMB96_09490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMB96_09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_09505 PF00119 ATP synthase A chain NMB96_09510 PF00137 ATP synthase subunit C NMB96_09515 PF00430 ATP synthase B/B' CF(0) NMB96_09520 PF00213 ATP synthase delta (OSCP) subunit NMB96_09525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMB96_09525 PF00306 ATP synthase alpha/beta chain, C terminal domain NMB96_09525 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMB96_09530 PF00231 ATP synthase NMB96_09535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMB96_09535 PF02874 ATP synthase alpha/beta family, beta-barrel domain NMB96_09540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NMB96_09545 PF01817 Chorismate mutase type II NMB96_09555 PF00132 Bacterial transferase hexapeptide (six repeats) NMB96_09555 PF12804 MobA-like NTP transferase domain NMB96_09555 PF14602 Hexapeptide repeat of succinyl-transferase NMB96_09565 PF00512 His Kinase A (phospho-acceptor) domain NMB96_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_09570 PF02954 Bacterial regulatory protein, Fis family NMB96_09570 PF00072 Response regulator receiver domain NMB96_09570 PF00158 Sigma-54 interaction domain NMB96_09575 PF02687 FtsX-like permease family NMB96_09575 PF12704 MacB-like periplasmic core domain NMB96_09580 PF12704 MacB-like periplasmic core domain NMB96_09580 PF00005 ABC transporter NMB96_09580 PF02687 FtsX-like permease family NMB96_09585 PF00005 ABC transporter NMB96_09590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_09595 PF01380 SIS domain NMB96_09600 PF13545 Crp-like helix-turn-helix domain NMB96_09600 PF00027 Cyclic nucleotide-binding domain NMB96_09625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMB96_09630 PF05275 Copper resistance protein B precursor (CopB) NMB96_09635 PF07731 Multicopper oxidase NMB96_09635 PF00394 Multicopper oxidase NMB96_09635 PF07732 Multicopper oxidase NMB96_09650 PF01432 Peptidase family M3 NMB96_09660 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_09660 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_09665 PF07977 FabA-like domain NMB96_09670 PF00817 impB/mucB/samB family NMB96_09670 PF11799 impB/mucB/samB family C-terminal domain NMB96_09670 PF11798 IMS family HHH motif NMB96_09675 PF13419 Haloacid dehalogenase-like hydrolase NMB96_09680 PF00593 TonB dependent receptor NMB96_09680 PF07715 TonB-dependent Receptor Plug Domain NMB96_09685 PF00756 Putative esterase NMB96_09695 PF13185 GAF domain NMB96_09710 PF01242 6-pyruvoyl tetrahydropterin synthase NMB96_09715 PF00593 TonB dependent receptor NMB96_09715 PF07715 TonB-dependent Receptor Plug Domain NMB96_09725 PF00270 DEAD/DEAH box helicase NMB96_09725 PF00271 Helicase conserved C-terminal domain NMB96_09735 PF14497 Glutathione S-transferase, C-terminal domain NMB96_09735 PF02798 Glutathione S-transferase, N-terminal domain NMB96_09740 PF00437 Type II/IV secretion system protein NMB96_09760 PF00571 CBS domain NMB96_09760 PF00291 Pyridoxal-phosphate dependent enzyme NMB96_09765 PF01053 Cys/Met metabolism PLP-dependent enzyme NMB96_09775 PF00005 ABC transporter NMB96_09780 PF14307 Glycosyltransferase WbsX NMB96_09780 PF05045 Rhamnan synthesis protein F NMB96_09785 PF05598 Transposase domain (DUF772) NMB96_09800 PF05598 Transposase domain (DUF772) NMB96_09820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_09820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMB96_09825 PF01370 NAD dependent epimerase/dehydratase family NMB96_09830 PF00106 short chain dehydrogenase NMB96_09835 PF01565 FAD binding domain NMB96_09835 PF04030 D-arabinono-1,4-lactone oxidase NMB96_09840 PF01040 UbiA prenyltransferase family NMB96_09850 PF01012 Electron transfer flavoprotein domain NMB96_09850 PF00766 Electron transfer flavoprotein FAD-binding domain NMB96_09855 PF01012 Electron transfer flavoprotein domain NMB96_09860 PF16363 GDP-mannose 4,6 dehydratase NMB96_09865 PF00483 Nucleotidyl transferase NMB96_09870 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NMB96_09875 PF04321 RmlD substrate binding domain NMB96_09880 PF01050 Mannose-6-phosphate isomerase NMB96_09880 PF00483 Nucleotidyl transferase NMB96_09885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMB96_09885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMB96_09885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMB96_09885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMB96_09890 PF01144 Coenzyme A transferase NMB96_09895 PF01144 Coenzyme A transferase NMB96_09900 PF05045 Rhamnan synthesis protein F NMB96_09900 PF14307 Glycosyltransferase WbsX NMB96_09925 PF03886 ABC-type transport auxiliary lipoprotein component NMB96_09925 PF02470 MlaD protein NMB96_09930 PF00005 ABC transporter NMB96_09935 PF02405 Permease MlaE NMB96_09950 PF03129 Anticodon binding domain NMB96_09950 PF04073 Aminoacyl-tRNA editing domain NMB96_09950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMB96_09960 PF01066 CDP-alcohol phosphatidyltransferase NMB96_09975 PF00544 Pectate lyase NMB96_09980 PF00544 Pectate lyase NMB96_09985 PF08264 Anticodon-binding domain of tRNA NMB96_09985 PF00133 tRNA synthetases class I (I, L, M and V) NMB96_09985 PF10458 Valyl tRNA synthetase tRNA binding arm NMB96_10000 PF02789 Cytosol aminopeptidase family, N-terminal domain NMB96_10000 PF00883 Cytosol aminopeptidase family, catalytic domain NMB96_10010 PF03739 Lipopolysaccharide export system permease LptF/LptG NMB96_10025 PF00589 Phage integrase family NMB96_10025 PF02899 Phage integrase, N-terminal SAM-like domain NMB96_10030 PF10411 Disulfide bond isomerase protein N-terminus NMB96_10030 PF13098 Thioredoxin-like domain NMB96_10035 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NMB96_10035 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NMB96_10035 PF02769 AIR synthase related protein, C-terminal domain NMB96_10045 PF00082 Subtilase family NMB96_10045 PF04151 Bacterial pre-peptidase C-terminal domain NMB96_10055 PF13018 Extended Signal Peptide of Type V secretion system NMB96_10055 PF03895 YadA-like membrane anchor domain NMB96_10055 PF05658 Head domain of trimeric autotransporter adhesin NMB96_10055 PF05662 Coiled stalk of trimeric autotransporter adhesin NMB96_10060 PF00082 Subtilase family NMB96_10060 PF04151 Bacterial pre-peptidase C-terminal domain NMB96_10065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NMB96_10065 PF00437 Type II/IV secretion system protein NMB96_10070 PF00482 Type II secretion system (T2SS), protein F NMB96_10075 PF08334 Type II secretion system (T2SS), protein G NMB96_10080 PF12019 Type II transport protein GspH NMB96_10085 PF07963 Prokaryotic N-terminal methylation motif NMB96_10095 PF03934 Type II secretion system (T2SS), protein K NMB96_10100 PF05137 Fimbrial assembly protein (PilN) NMB96_10105 PF10741 Type II secretion system (T2SS), protein M subtype b NMB96_10115 PF00263 Bacterial type II and III secretion system protein NMB96_10115 PF03958 Bacterial type II/III secretion system short domain NMB96_10130 PF07702 UTRA domain NMB96_10130 PF00392 Bacterial regulatory proteins, gntR family NMB96_10140 PF00593 TonB dependent receptor NMB96_10140 PF07715 TonB-dependent Receptor Plug Domain NMB96_10175 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NMB96_10175 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NMB96_10190 PF01327 Polypeptide deformylase NMB96_10195 PF00005 ABC transporter NMB96_10195 PF12848 ABC transporter NMB96_10205 PF00464 Serine hydroxymethyltransferase NMB96_10210 PF03477 ATP cone domain NMB96_10220 PF01872 RibD C-terminal domain NMB96_10220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NMB96_10235 PF00677 Lumazine binding domain NMB96_10240 PF00925 GTP cyclohydrolase II NMB96_10240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NMB96_10250 PF00885 6,7-dimethyl-8-ribityllumazine synthase NMB96_10255 PF01029 NusB family NMB96_10260 PF02769 AIR synthase related protein, C-terminal domain NMB96_10260 PF00586 AIR synthase related protein, N-terminal domain NMB96_10275 PF03814 Potassium-transporting ATPase A subunit NMB96_10285 PF02669 K+-transporting ATPase, c chain NMB96_10290 PF00512 His Kinase A (phospho-acceptor) domain NMB96_10290 PF13492 GAF domain NMB96_10290 PF13493 Domain of unknown function (DUF4118) NMB96_10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_10290 PF02702 Osmosensitive K+ channel His kinase sensor domain NMB96_10295 PF00072 Response regulator receiver domain NMB96_10295 PF00486 Transcriptional regulatory protein, C terminal NMB96_10310 PF02913 FAD linked oxidases, C-terminal domain NMB96_10310 PF01565 FAD binding domain NMB96_10315 PF04307 LexA-binding, inner membrane-associated putative hydrolase NMB96_10320 PF02021 Uncharacterised protein family UPF0102 NMB96_10330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMB96_10355 PF02381 MraZ protein, putative antitoxin-like NMB96_10360 PF01795 MraW methylase family NMB96_10365 PF04999 Cell division protein FtsL NMB96_10370 PF03717 Penicillin-binding Protein dimerisation domain NMB96_10370 PF00905 Penicillin binding protein transpeptidase domain NMB96_10375 PF02875 Mur ligase family, glutamate ligase domain NMB96_10375 PF08245 Mur ligase middle domain NMB96_10375 PF01225 Mur ligase family, catalytic domain NMB96_10380 PF01225 Mur ligase family, catalytic domain NMB96_10380 PF02875 Mur ligase family, glutamate ligase domain NMB96_10380 PF08245 Mur ligase middle domain NMB96_10385 PF00953 Glycosyl transferase family 4 NMB96_10390 PF01098 Cell cycle protein NMB96_10395 PF04101 Glycosyltransferase family 28 C-terminal domain NMB96_10395 PF03033 Glycosyltransferase family 28 N-terminal domain NMB96_10400 PF02875 Mur ligase family, glutamate ligase domain NMB96_10400 PF01225 Mur ligase family, catalytic domain NMB96_10400 PF08245 Mur ligase middle domain NMB96_10405 PF07478 D-ala D-ala ligase C-terminus NMB96_10405 PF01820 D-ala D-ala ligase N-terminus NMB96_10410 PF08478 POTRA domain, FtsQ-type NMB96_10410 PF03799 Cell division protein FtsQ NMB96_10415 PF02491 SHS2 domain inserted in FTSA NMB96_10420 PF12327 FtsZ family, C-terminal domain NMB96_10420 PF00091 Tubulin/FtsZ family, GTPase domain NMB96_10425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NMB96_10435 PF01476 LysM domain NMB96_10435 PF08525 Opacity-associated protein A N-terminal motif NMB96_10435 PF01551 Peptidase family M23 NMB96_10440 PF01043 SecA preprotein cross-linking domain NMB96_10440 PF07516 SecA Wing and Scaffold domain NMB96_10440 PF07517 SecA DEAD-like domain NMB96_10440 PF02810 SEC-C motif NMB96_10450 PF00293 NUDIX domain NMB96_10465 PF02219 Methylenetetrahydrofolate reductase NMB96_10475 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_10475 PF16197 Ketoacyl-synthetase C-terminal extension NMB96_10475 PF00107 Zinc-binding dehydrogenase NMB96_10475 PF14765 Polyketide synthase dehydratase NMB96_10475 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_10475 PF00698 Acyl transferase domain NMB96_10475 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_10475 PF08659 KR domain NMB96_10475 PF00550 Phosphopantetheine attachment site NMB96_10480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMB96_10510 PF05221 S-adenosyl-L-homocysteine hydrolase NMB96_10510 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NMB96_10520 PF00311 Phosphoenolpyruvate carboxylase NMB96_10550 PF00328 Histidine phosphatase superfamily (branch 2) NMB96_10555 PF00438 S-adenosylmethionine synthetase, N-terminal domain NMB96_10555 PF02772 S-adenosylmethionine synthetase, central domain NMB96_10555 PF02773 S-adenosylmethionine synthetase, C-terminal domain NMB96_10565 PF13649 Methyltransferase domain NMB96_10570 PF01207 Dihydrouridine synthase (Dus) NMB96_10575 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NMB96_10575 PF00294 pfkB family carbohydrate kinase NMB96_10580 PF07662 Na+ dependent nucleoside transporter C-terminus NMB96_10580 PF01773 Na+ dependent nucleoside transporter N-terminus NMB96_10580 PF07670 Nucleoside recognition NMB96_10585 PF00248 Aldo/keto reductase family NMB96_10595 PF07715 TonB-dependent Receptor Plug Domain NMB96_10595 PF00593 TonB dependent receptor NMB96_10615 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_10620 PF00005 ABC transporter NMB96_10630 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NMB96_10640 PF00005 ABC transporter NMB96_10645 PF13472 GDSL-like Lipase/Acylhydrolase family NMB96_10650 PF00072 Response regulator receiver domain NMB96_10650 PF00486 Transcriptional regulatory protein, C terminal NMB96_10655 PF00512 His Kinase A (phospho-acceptor) domain NMB96_10655 PF08521 Two-component sensor kinase N-terminal NMB96_10655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_10665 PF01219 Prokaryotic diacylglycerol kinase NMB96_10690 PF01790 Prolipoprotein diacylglyceryl transferase NMB96_10695 PF00303 Thymidylate synthase NMB96_10700 PF00186 Dihydrofolate reductase NMB96_10705 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NMB96_10705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_10710 PF00005 ABC transporter NMB96_10715 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_10725 PF00296 Luciferase-like monooxygenase NMB96_10730 PF03358 NADPH-dependent FMN reductase NMB96_10735 PF00149 Calcineurin-like phosphoesterase NMB96_10740 PF04379 ApaG domain NMB96_10745 PF00398 Ribosomal RNA adenine dimethylase NMB96_10750 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NMB96_10755 PF09312 SurA N-terminal domain NMB96_10755 PF00639 PPIC-type PPIASE domain NMB96_10760 PF04453 LPS transport system D NMB96_10760 PF03968 OstA-like protein NMB96_10765 PF00850 Histone deacetylase domain NMB96_10770 PF01923 Cobalamin adenosyltransferase NMB96_10780 PF01494 FAD binding domain NMB96_10785 PF01494 FAD binding domain NMB96_10805 PF00392 Bacterial regulatory proteins, gntR family NMB96_10805 PF07729 FCD domain NMB96_10810 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NMB96_10815 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit NMB96_10815 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NMB96_10820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_10820 PF03466 LysR substrate binding domain NMB96_10825 PF00501 AMP-binding enzyme NMB96_10825 PF13193 AMP-binding enzyme C-terminal domain NMB96_10830 PF00171 Aldehyde dehydrogenase family NMB96_10835 PF00378 Enoyl-CoA hydratase/isomerase NMB96_10855 PF08450 SMP-30/Gluconolactonase/LRE-like region NMB96_10860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMB96_10860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NMB96_10865 PF01728 FtsJ-like methyltransferase NMB96_10865 PF18125 RlmM ferredoxin-like domain NMB96_10880 PF00892 EamA-like transporter family NMB96_10885 PF00749 tRNA synthetases class I (E and Q), catalytic domain NMB96_10885 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NMB96_10900 PF00990 Diguanylate cyclase, GGDEF domain NMB96_10900 PF00072 Response regulator receiver domain NMB96_10905 PF00072 Response regulator receiver domain NMB96_10905 PF01627 Hpt domain NMB96_10905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_10905 PF00512 His Kinase A (phospho-acceptor) domain NMB96_10905 PF17149 Periplasmic sensor domain found in signal transduction proteins NMB96_10905 PF00672 HAMP domain NMB96_10910 PF00196 Bacterial regulatory proteins, luxR family NMB96_10910 PF00072 Response regulator receiver domain NMB96_10920 PF01625 Peptide methionine sulfoxide reductase NMB96_10930 PF00923 Transaldolase/Fructose-6-phosphate aldolase NMB96_10935 PF01272 Transcription elongation factor, GreA/GreB, C-term NMB96_10935 PF14760 Rnk N-terminus NMB96_10940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_10940 PF03466 LysR substrate binding domain NMB96_10945 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_10945 PF13192 Thioredoxin domain NMB96_10950 PF10417 C-terminal domain of 1-Cys peroxiredoxin NMB96_10950 PF00578 AhpC/TSA family NMB96_10955 PF17827 PrmC N-terminal domain NMB96_10955 PF05175 Methyltransferase small domain NMB96_10965 PF00561 alpha/beta hydrolase fold NMB96_10975 PF00293 NUDIX domain NMB96_10980 PF01367 5'-3' exonuclease, C-terminal SAM fold NMB96_10980 PF00476 DNA polymerase family A NMB96_10980 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NMB96_10980 PF01612 3'-5' exonuclease NMB96_11030 PF01063 Amino-transferase class IV NMB96_11035 PF00082 Subtilase family NMB96_11035 PF04151 Bacterial pre-peptidase C-terminal domain NMB96_11045 PF04073 Aminoacyl-tRNA editing domain NMB96_11060 PF03358 NADPH-dependent FMN reductase NMB96_11065 PF03631 Virulence factor BrkB NMB96_11070 PF08534 Redoxin NMB96_11075 PF00708 Acylphosphatase NMB96_11085 PF03976 Polyphosphate kinase 2 (PPK2) NMB96_11090 PF00994 Probable molybdopterin binding domain NMB96_11105 PF03462 PCRF domain NMB96_11105 PF00472 RF-1 domain NMB96_11110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NMB96_11110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NMB96_11110 PF01488 Shikimate / quinate 5-dehydrogenase NMB96_11120 PF03550 Outer membrane lipoprotein LolB NMB96_11125 PF08544 GHMP kinases C terminal NMB96_11125 PF00288 GHMP kinases N terminal domain NMB96_11135 PF14572 Phosphoribosyl synthetase-associated domain NMB96_11135 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NMB96_11140 PF14693 Ribosomal protein TL5, C-terminal domain NMB96_11140 PF01386 Ribosomal L25p family NMB96_11145 PF01195 Peptidyl-tRNA hydrolase NMB96_11150 PF01926 50S ribosome-binding GTPase NMB96_11150 PF06071 Protein of unknown function (DUF933) NMB96_11170 PF00009 Elongation factor Tu GTP binding domain NMB96_11170 PF03144 Elongation factor Tu domain 2 NMB96_11170 PF03143 Elongation factor Tu C-terminal domain NMB96_11180 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NMB96_11185 PF02357 Transcription termination factor nusG NMB96_11185 PF00467 KOW motif NMB96_11190 PF00298 Ribosomal protein L11, RNA binding domain NMB96_11190 PF03946 Ribosomal protein L11, N-terminal domain NMB96_11195 PF00687 Ribosomal protein L1p/L10e family NMB96_11200 PF00466 Ribosomal protein L10 NMB96_11205 PF00542 Ribosomal protein L7/L12 C-terminal domain NMB96_11205 PF16320 Ribosomal protein L7/L12 dimerisation domain NMB96_11210 PF04560 RNA polymerase Rpb2, domain 7 NMB96_11210 PF00562 RNA polymerase Rpb2, domain 6 NMB96_11210 PF10385 RNA polymerase beta subunit external 1 domain NMB96_11210 PF04561 RNA polymerase Rpb2, domain 2 NMB96_11210 PF04563 RNA polymerase beta subunit NMB96_11210 PF04565 RNA polymerase Rpb2, domain 3 NMB96_11215 PF04997 RNA polymerase Rpb1, domain 1 NMB96_11215 PF00623 RNA polymerase Rpb1, domain 2 NMB96_11215 PF04983 RNA polymerase Rpb1, domain 3 NMB96_11215 PF05000 RNA polymerase Rpb1, domain 4 NMB96_11215 PF04998 RNA polymerase Rpb1, domain 5 NMB96_11220 PF00164 Ribosomal protein S12/S23 NMB96_11225 PF00177 Ribosomal protein S7p/S5e NMB96_11230 PF00009 Elongation factor Tu GTP binding domain NMB96_11230 PF03764 Elongation factor G, domain IV NMB96_11230 PF03144 Elongation factor Tu domain 2 NMB96_11230 PF00679 Elongation factor G C-terminus NMB96_11230 PF14492 Elongation Factor G, domain II NMB96_11235 PF03144 Elongation factor Tu domain 2 NMB96_11235 PF03143 Elongation factor Tu C-terminal domain NMB96_11235 PF00009 Elongation factor Tu GTP binding domain NMB96_11240 PF00338 Ribosomal protein S10p/S20e NMB96_11245 PF00297 Ribosomal protein L3 NMB96_11250 PF00573 Ribosomal protein L4/L1 family NMB96_11255 PF00276 Ribosomal protein L23 NMB96_11260 PF00181 Ribosomal Proteins L2, RNA binding domain NMB96_11260 PF03947 Ribosomal Proteins L2, C-terminal domain NMB96_11265 PF00203 Ribosomal protein S19 NMB96_11270 PF00237 Ribosomal protein L22p/L17e NMB96_11275 PF07650 KH domain NMB96_11275 PF00189 Ribosomal protein S3, C-terminal domain NMB96_11280 PF00252 Ribosomal protein L16p/L10e NMB96_11285 PF00831 Ribosomal L29 protein NMB96_11290 PF00366 Ribosomal protein S17 NMB96_11295 PF00238 Ribosomal protein L14p/L23e NMB96_11300 PF00467 KOW motif NMB96_11300 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NMB96_11305 PF00281 Ribosomal protein L5 NMB96_11305 PF00673 ribosomal L5P family C-terminus NMB96_11310 PF00253 Ribosomal protein S14p/S29e NMB96_11315 PF00410 Ribosomal protein S8 NMB96_11320 PF00347 Ribosomal protein L6 NMB96_11325 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NMB96_11330 PF00333 Ribosomal protein S5, N-terminal domain NMB96_11330 PF03719 Ribosomal protein S5, C-terminal domain NMB96_11335 PF00327 Ribosomal protein L30p/L7e NMB96_11340 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NMB96_11345 PF00344 SecY translocase NMB96_11350 PF00416 Ribosomal protein S13/S18 NMB96_11355 PF00411 Ribosomal protein S11 NMB96_11360 PF00163 Ribosomal protein S4/S9 N-terminal domain NMB96_11360 PF01479 S4 domain NMB96_11365 PF01000 RNA polymerase Rpb3/RpoA insert domain NMB96_11365 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NMB96_11365 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NMB96_11370 PF01196 Ribosomal protein L17 NMB96_11375 PF02600 Disulfide bond formation protein DsbB NMB96_11380 PF01474 Class-II DAHP synthetase family NMB96_11390 PF01425 Amidase NMB96_11400 PF00679 Elongation factor G C-terminus NMB96_11400 PF00009 Elongation factor Tu GTP binding domain NMB96_11400 PF03144 Elongation factor Tu domain 2 NMB96_11405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NMB96_11410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NMB96_11410 PF00056 lactate/malate dehydrogenase, NAD binding domain NMB96_11415 PF00043 Glutathione S-transferase, C-terminal domain NMB96_11415 PF02798 Glutathione S-transferase, N-terminal domain NMB96_11435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMB96_11435 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_11440 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_11440 PF00107 Zinc-binding dehydrogenase NMB96_11445 PF00691 OmpA family NMB96_11445 PF00223 Photosystem I psaA/psaB protein NMB96_11455 PF00849 RNA pseudouridylate synthase NMB96_11465 PF00155 Aminotransferase class I and II NMB96_11475 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_11480 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_11485 PF17850 CysA C-terminal regulatory domain NMB96_11485 PF12857 TOBE-like domain NMB96_11485 PF00005 ABC transporter NMB96_11495 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_11495 PF00107 Zinc-binding dehydrogenase NMB96_11505 PF05506 Domain of unknown function (DUF756) NMB96_11505 PF04185 Phosphoesterase family NMB96_11510 PF10459 Peptidase S46 NMB96_11515 PF00300 Histidine phosphatase superfamily (branch 1) NMB96_11525 PF08245 Mur ligase middle domain NMB96_11525 PF02875 Mur ligase family, glutamate ligase domain NMB96_11540 PF00156 Phosphoribosyl transferase domain NMB96_11545 PF04305 Protein of unknown function (DUF455) NMB96_11560 PF00149 Calcineurin-like phosphoesterase NMB96_11565 PF01569 PAP2 superfamily NMB96_11570 PF00534 Glycosyl transferases group 1 NMB96_11570 PF13439 Glycosyltransferase Family 4 NMB96_11575 PF02541 Ppx/GppA phosphatase family NMB96_11580 PF13089 Polyphosphate kinase N-terminal domain NMB96_11580 PF17941 Polyphosphate kinase C-terminal domain 1 NMB96_11580 PF02503 Polyphosphate kinase middle domain NMB96_11580 PF13090 Polyphosphate kinase C-terminal domain 2 NMB96_11585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_11585 PF00512 His Kinase A (phospho-acceptor) domain NMB96_11585 PF00989 PAS fold NMB96_11585 PF11808 Phosphate regulon sensor protein PhoR NMB96_11590 PF00072 Response regulator receiver domain NMB96_11590 PF00486 Transcriptional regulatory protein, C terminal NMB96_11595 PF01435 Peptidase family M48 NMB96_11595 PF13181 Tetratricopeptide repeat NMB96_11600 PF00462 Glutaredoxin NMB96_11610 PF00180 Isocitrate/isopropylmalate dehydrogenase NMB96_11610 PF18324 Hypothetical protein TT1725 NMB96_11645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_11645 PF00512 His Kinase A (phospho-acceptor) domain NMB96_11645 PF08448 PAS fold NMB96_11645 PF00072 Response regulator receiver domain NMB96_11645 PF13188 PAS domain NMB96_11655 PF05698 Bacterial trigger factor protein (TF) C-terminus NMB96_11655 PF05697 Bacterial trigger factor protein (TF) NMB96_11660 PF00574 Clp protease NMB96_11665 PF10431 C-terminal, D2-small domain, of ClpB protein NMB96_11665 PF07724 AAA domain (Cdc48 subfamily) NMB96_11665 PF06689 ClpX C4-type zinc finger NMB96_11670 PF02190 ATP-dependent protease La (LON) substrate-binding domain NMB96_11670 PF05362 Lon protease (S16) C-terminal proteolytic domain NMB96_11670 PF00004 ATPase family associated with various cellular activities (AAA) NMB96_11675 PF00216 Bacterial DNA-binding protein NMB96_11700 PF05257 CHAP domain NMB96_11700 PF01476 LysM domain NMB96_11705 PF16123 Hydroxyacylglutathione hydrolase C-terminus NMB96_11705 PF00753 Metallo-beta-lactamase superfamily NMB96_11715 PF00075 RNase H NMB96_11720 PF00929 Exonuclease NMB96_11740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NMB96_11755 PF06463 Molybdenum Cofactor Synthesis C NMB96_11755 PF04055 Radical SAM superfamily NMB96_11760 PF01967 MoaC family NMB96_11765 PF02597 ThiS family NMB96_11770 PF02391 MoaE protein NMB96_11785 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NMB96_11785 PF12169 DNA polymerase III subunits gamma and tau domain III NMB96_11785 PF12170 DNA polymerase III tau subunit V interacting with alpha NMB96_11790 PF02575 YbaB/EbfC DNA-binding family NMB96_11795 PF13662 Toprim domain NMB96_11795 PF02132 RecR protein NMB96_11800 PF01230 HIT domain NMB96_11810 PF01841 Transglutaminase-like superfamily NMB96_11810 PF13559 Domain of unknown function (DUF4129) NMB96_11810 PF11992 Domain of unknown function (DUF3488) NMB96_11820 PF17863 AAA lid domain NMB96_11820 PF07726 ATPase family associated with various cellular activities (AAA) NMB96_11835 PF02545 Maf-like protein NMB96_11840 PF02620 Large ribosomal RNA subunit accumulation protein YceD NMB96_11845 PF01783 Ribosomal L32p protein family NMB96_11850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMB96_11850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMB96_11855 PF00698 Acyl transferase domain NMB96_11865 PF00550 Phosphopantetheine attachment site NMB96_11870 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_11870 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_11875 PF04715 Anthranilate synthase component I, N terminal region NMB96_11875 PF00425 chorismate binding enzyme NMB96_11880 PF02618 YceG-like family NMB96_11885 PF09115 DNA polymerase III, delta subunit, C terminal NMB96_11900 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NMB96_11905 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NMB96_11915 PF02954 Bacterial regulatory protein, Fis family NMB96_11915 PF06506 Propionate catabolism activator NMB96_11915 PF00158 Sigma-54 interaction domain NMB96_11925 PF00285 Citrate synthase, C-terminal domain NMB96_11930 PF00330 Aconitase family (aconitate hydratase) NMB96_11930 PF00694 Aconitase C-terminal domain NMB96_11935 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH NMB96_11945 PF04303 PrpF protein NMB96_11950 PF07715 TonB-dependent Receptor Plug Domain NMB96_11950 PF00593 TonB dependent receptor NMB96_11960 PF00207 Alpha-2-macroglobulin family NMB96_11960 PF01835 MG2 domain NMB96_11960 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NMB96_11960 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NMB96_11960 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NMB96_11960 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NMB96_11960 PF07703 Alpha-2-macroglobulin bait region domain NMB96_11960 PF17962 Bacterial macroglobulin domain 6 NMB96_11990 PF00005 ABC transporter NMB96_11990 PF02687 FtsX-like permease family NMB96_11990 PF12704 MacB-like periplasmic core domain NMB96_12000 PF02954 Bacterial regulatory protein, Fis family NMB96_12000 PF00072 Response regulator receiver domain NMB96_12000 PF00158 Sigma-54 interaction domain NMB96_12005 PF00512 His Kinase A (phospho-acceptor) domain NMB96_12005 PF00989 PAS fold NMB96_12005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12020 PF08534 Redoxin NMB96_12030 PF00226 DnaJ domain NMB96_12030 PF01556 DnaJ C terminal domain NMB96_12035 PF00072 Response regulator receiver domain NMB96_12040 PF12221 Bacterial membrane protein N terminal NMB96_12040 PF01145 SPFH domain / Band 7 family NMB96_12045 PF01145 SPFH domain / Band 7 family NMB96_12060 PF00709 Adenylosuccinate synthetase NMB96_12095 PF08463 EcoEI R protein C-terminal NMB96_12095 PF00271 Helicase conserved C-terminal domain NMB96_12095 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) NMB96_12095 PF04851 Type III restriction enzyme, res subunit NMB96_12110 PF12161 HsdM N-terminal domain NMB96_12110 PF02384 N-6 DNA Methylase NMB96_12115 PF01420 Type I restriction modification DNA specificity domain NMB96_12165 PF13456 Reverse transcriptase-like NMB96_12165 PF00300 Histidine phosphatase superfamily (branch 1) NMB96_12170 PF01256 Carbohydrate kinase NMB96_12190 PF17678 Glycosyl hydrolase family 92 N-terminal domain NMB96_12190 PF07971 Glycosyl hydrolase family 92 NMB96_12200 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_12220 PF01548 Transposase NMB96_12220 PF02371 Transposase IS116/IS110/IS902 family NMB96_12225 PF17755 UvrA DNA-binding domain NMB96_12230 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMB96_12230 PF14310 Fibronectin type III-like domain NMB96_12230 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_12250 PF07690 Major Facilitator Superfamily NMB96_12255 PF07940 Heparinase II/III-like protein NMB96_12255 PF05426 Alginate lyase NMB96_12260 PF14592 Chondroitinase B NMB96_12270 PF07729 FCD domain NMB96_12270 PF00392 Bacterial regulatory proteins, gntR family NMB96_12275 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NMB96_12275 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NMB96_12280 PF00941 FAD binding domain in molybdopterin dehydrogenase NMB96_12280 PF03450 CO dehydrogenase flavoprotein C-terminal domain NMB96_12285 PF01799 [2Fe-2S] binding domain NMB96_12285 PF10518 TAT (twin-arginine translocation) pathway signal sequence NMB96_12285 PF00111 2Fe-2S iron-sulfur cluster binding domain NMB96_12290 PF08281 Sigma-70, region 4 NMB96_12290 PF04542 Sigma-70 region 2 NMB96_12305 PF00328 Histidine phosphatase superfamily (branch 2) NMB96_12325 PF01726 LexA DNA binding domain NMB96_12325 PF00717 Peptidase S24-like NMB96_12340 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMB96_12340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMB96_12340 PF14579 Helix-hairpin-helix motif NMB96_12340 PF02811 PHP domain NMB96_12350 PF03169 OPT oligopeptide transporter protein NMB96_12360 PF01011 PQQ enzyme repeat NMB96_12365 PF04966 Carbohydrate-selective porin, OprB family NMB96_12370 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NMB96_12370 PF07676 WD40-like Beta Propeller Repeat NMB96_12370 PF00326 Prolyl oligopeptidase family NMB96_12385 PF12833 Helix-turn-helix domain NMB96_12385 PF02311 AraC-like ligand binding domain NMB96_12400 PF00664 ABC transporter transmembrane region NMB96_12400 PF00005 ABC transporter NMB96_12400 PF03412 Peptidase C39 family NMB96_12435 PF00199 Catalase NMB96_12435 PF18011 C-terminal domain found in long catalases NMB96_12435 PF06628 Catalase-related immune-responsive NMB96_12445 PF00248 Aldo/keto reductase family NMB96_12450 PF00135 Carboxylesterase family NMB96_12455 PF02347 Glycine cleavage system P-protein NMB96_12460 PF07690 Major Facilitator Superfamily NMB96_12480 PF08019 Phosphoethanolamine transferase EptA/EptB NMB96_12480 PF00884 Sulfatase NMB96_12495 PF00486 Transcriptional regulatory protein, C terminal NMB96_12495 PF00072 Response regulator receiver domain NMB96_12500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12500 PF00512 His Kinase A (phospho-acceptor) domain NMB96_12510 PF03776 Septum formation topological specificity factor MinE NMB96_12515 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NMB96_12520 PF03775 Septum formation inhibitor MinC, C-terminal domain NMB96_12520 PF05209 Septum formation inhibitor MinC, N-terminal domain NMB96_12530 PF07730 Histidine kinase NMB96_12535 PF00196 Bacterial regulatory proteins, luxR family NMB96_12535 PF00072 Response regulator receiver domain NMB96_12550 PF00730 HhH-GPD superfamily base excision DNA repair protein NMB96_12580 PF01370 NAD dependent epimerase/dehydratase family NMB96_12580 PF02222 ATP-grasp domain NMB96_12590 PF04377 Arginine-tRNA-protein transferase, C terminus NMB96_12590 PF04376 Arginine-tRNA-protein transferase, N terminus NMB96_12605 PF04542 Sigma-70 region 2 NMB96_12605 PF08281 Sigma-70, region 4 NMB96_12620 PF00378 Enoyl-CoA hydratase/isomerase NMB96_12635 PF00005 ABC transporter NMB96_12635 PF17755 UvrA DNA-binding domain NMB96_12635 PF17760 UvrA interaction domain NMB96_12640 PF00829 Ribosomal prokaryotic L21 protein NMB96_12645 PF01016 Ribosomal L27 protein NMB96_12650 PF01018 GTP1/OBG NMB96_12650 PF01926 50S ribosome-binding GTPase NMB96_12655 PF01649 Ribosomal protein S20 NMB96_12660 PF03023 Lipid II flippase MurJ NMB96_12665 PF06574 FAD synthetase NMB96_12665 PF01687 Riboflavin kinase NMB96_12670 PF08264 Anticodon-binding domain of tRNA NMB96_12670 PF00133 tRNA synthetases class I (I, L, M and V) NMB96_12670 PF06827 Zinc finger found in FPG and IleRS NMB96_12675 PF01252 Signal peptidase (SPase) II NMB96_12680 PF02401 LytB protein NMB96_12690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NMB96_12690 PF06481 COX Aromatic Rich Motif NMB96_12695 PF00115 Cytochrome C and Quinol oxidase polypeptide I NMB96_12700 PF00510 Cytochrome c oxidase subunit III NMB96_12705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NMB96_12715 PF18073 Rubredoxin metal binding domain NMB96_12720 PF05656 Protein of unknown function (DUF805) NMB96_12730 PF12833 Helix-turn-helix domain NMB96_12735 PF00183 Hsp90 protein NMB96_12735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NMB96_12750 PF01740 STAS domain NMB96_12750 PF08678 Rsbr N terminal NMB96_12755 PF01740 STAS domain NMB96_12760 PF13581 Histidine kinase-like ATPase domain NMB96_12770 PF17149 Periplasmic sensor domain found in signal transduction proteins NMB96_12770 PF00672 HAMP domain NMB96_12770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12770 PF00072 Response regulator receiver domain NMB96_12770 PF01627 Hpt domain NMB96_12770 PF00512 His Kinase A (phospho-acceptor) domain NMB96_12775 PF00512 His Kinase A (phospho-acceptor) domain NMB96_12775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12775 PF08448 PAS fold NMB96_12775 PF13188 PAS domain NMB96_12775 PF00072 Response regulator receiver domain NMB96_12785 PF00593 TonB dependent receptor NMB96_12785 PF07715 TonB-dependent Receptor Plug Domain NMB96_12790 PF00085 Thioredoxin NMB96_12795 PF07237 Protein of unknown function (DUF1428) NMB96_12800 PF13492 GAF domain NMB96_12800 PF13493 Domain of unknown function (DUF4118) NMB96_12800 PF02702 Osmosensitive K+ channel His kinase sensor domain NMB96_12800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12800 PF00512 His Kinase A (phospho-acceptor) domain NMB96_12805 PF01339 CheB methylesterase NMB96_12805 PF00072 Response regulator receiver domain NMB96_12810 PF01739 CheR methyltransferase, SAM binding domain NMB96_12810 PF03705 CheR methyltransferase, all-alpha domain NMB96_12815 PF00672 HAMP domain NMB96_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12815 PF00512 His Kinase A (phospho-acceptor) domain NMB96_12815 PF01627 Hpt domain NMB96_12815 PF00072 Response regulator receiver domain NMB96_12815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NMB96_12820 PF00072 Response regulator receiver domain NMB96_12820 PF13426 PAS domain NMB96_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_12825 PF00072 Response regulator receiver domain NMB96_12845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_12845 PF03466 LysR substrate binding domain NMB96_12850 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NMB96_12895 PF01263 Aldose 1-epimerase NMB96_12900 PF01578 Cytochrome C assembly protein NMB96_12905 PF02978 Signal peptide binding domain NMB96_12905 PF00448 SRP54-type protein, GTPase domain NMB96_12905 PF02881 SRP54-type protein, helical bundle domain NMB96_12910 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) NMB96_12915 PF03060 Nitronate monooxygenase NMB96_12925 PF00886 Ribosomal protein S16 NMB96_12930 PF01782 RimM N-terminal domain NMB96_12930 PF05239 PRC-barrel domain NMB96_12935 PF01746 tRNA (Guanine-1)-methyltransferase NMB96_12940 PF01245 Ribosomal protein L19 NMB96_12945 PF01554 MatE NMB96_12950 PF01479 S4 domain NMB96_12955 PF00141 Peroxidase NMB96_12965 PF01624 MutS domain I NMB96_12965 PF05188 MutS domain II NMB96_12965 PF00488 MutS domain V NMB96_12965 PF05192 MutS domain III NMB96_12965 PF05190 MutS family domain IV NMB96_13000 PF17754 MftR C-terminal domain NMB96_13000 PF00440 Bacterial regulatory proteins, tetR family NMB96_13005 PF00296 Luciferase-like monooxygenase NMB96_13015 PF00106 short chain dehydrogenase NMB96_13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_13025 PF03466 LysR substrate binding domain NMB96_13030 PF00375 Sodium:dicarboxylate symporter family NMB96_13035 PF13378 Enolase C-terminal domain-like NMB96_13040 PF16355 Domain of unknown function (DUF4982) NMB96_13040 PF00703 Glycosyl hydrolases family 2 NMB96_13040 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NMB96_13040 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NMB96_13040 PF02837 Glycosyl hydrolases family 2, sugar binding domain NMB96_13045 PF07745 Glycosyl hydrolase family 53 NMB96_13055 PF09856 Predicted transcriptional regulator (DUF2083) NMB96_13055 PF06114 IrrE N-terminal-like domain NMB96_13055 PF01381 Helix-turn-helix NMB96_13060 PF00171 Aldehyde dehydrogenase family NMB96_13065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_13065 PF02770 Acyl-CoA dehydrogenase, middle domain NMB96_13065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMB96_13070 PF00378 Enoyl-CoA hydratase/isomerase NMB96_13075 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMB96_13075 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMB96_13075 PF00378 Enoyl-CoA hydratase/isomerase NMB96_13080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NMB96_13080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NMB96_13085 PF01545 Cation efflux family NMB96_13090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMB96_13090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMB96_13090 PF00378 Enoyl-CoA hydratase/isomerase NMB96_13095 PF04542 Sigma-70 region 2 NMB96_13095 PF08281 Sigma-70, region 4 NMB96_13105 PF13180 PDZ domain NMB96_13110 PF00679 Elongation factor G C-terminus NMB96_13110 PF00009 Elongation factor Tu GTP binding domain NMB96_13110 PF03144 Elongation factor Tu domain 2 NMB96_13110 PF06421 GTP-binding protein LepA C-terminus NMB96_13115 PF10502 Signal peptidase, peptidase S26 NMB96_13125 PF00035 Double-stranded RNA binding motif NMB96_13125 PF14622 Ribonuclease-III-like NMB96_13130 PF01926 50S ribosome-binding GTPase NMB96_13130 PF07650 KH domain NMB96_13135 PF02565 Recombination protein O C terminal NMB96_13135 PF11967 Recombination protein O N terminal NMB96_13140 PF00072 Response regulator receiver domain NMB96_13140 PF00486 Transcriptional regulatory protein, C terminal NMB96_13145 PF05958 tRNA (Uracil-5-)-methyltransferase NMB96_13155 PF01928 CYTH domain NMB96_13160 PF01323 DSBA-like thioredoxin domain NMB96_13165 PF01593 Flavin containing amine oxidoreductase NMB96_13170 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NMB96_13175 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_13180 PF00156 Phosphoribosyl transferase domain NMB96_13185 PF01048 Phosphorylase superfamily NMB96_13190 PF00313 'Cold-shock' DNA-binding domain NMB96_13195 PF01494 FAD binding domain NMB96_13205 PF00270 DEAD/DEAH box helicase NMB96_13205 PF08494 DEAD/H associated NMB96_13205 PF00271 Helicase conserved C-terminal domain NMB96_13210 PF01068 ATP dependent DNA ligase domain NMB96_13210 PF04675 DNA ligase N terminus NMB96_13210 PF04679 ATP dependent DNA ligase C terminal region NMB96_13220 PF01068 ATP dependent DNA ligase domain NMB96_13220 PF04679 ATP dependent DNA ligase C terminal region NMB96_13220 PF04675 DNA ligase N terminus NMB96_13235 PF00990 Diguanylate cyclase, GGDEF domain NMB96_13235 PF00072 Response regulator receiver domain NMB96_13250 PF02803 Thiolase, C-terminal domain NMB96_13250 PF00108 Thiolase, N-terminal domain NMB96_13255 PF03797 Autotransporter beta-domain NMB96_13255 PF12951 Passenger-associated-transport-repeat NMB96_13255 PF00082 Subtilase family NMB96_13260 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NMB96_13260 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NMB96_13270 PF01863 Protein of unknown function DUF45 NMB96_13275 PF07043 Protein of unknown function (DUF1328) NMB96_13285 PF01258 Prokaryotic dksA/traR C4-type zinc finger NMB96_13300 PF04542 Sigma-70 region 2 NMB96_13300 PF08281 Sigma-70, region 4 NMB96_13325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMB96_13335 PF03831 PhnA domain NMB96_13335 PF08274 PhnA Zinc-Ribbon NMB96_13355 PF07690 Major Facilitator Superfamily NMB96_13390 PF09924 Uncharacterised conserved protein (DUF2156) NMB96_13390 PF03706 Lysylphosphatidylglycerol synthase TM region NMB96_13400 PF01042 Endoribonuclease L-PSP NMB96_13445 PF04545 Sigma-70, region 4 NMB96_13445 PF04542 Sigma-70 region 2 NMB96_13460 PF04060 Putative Fe-S cluster NMB96_13470 PF09334 tRNA synthetases class I (M) NMB96_13470 PF01588 Putative tRNA binding domain NMB96_13485 PF13732 Domain of unknown function (DUF4162) NMB96_13485 PF00005 ABC transporter NMB96_13490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMB96_13495 PF00324 Amino acid permease NMB96_13500 PF02574 Homocysteine S-methyltransferase NMB96_13515 PF01810 LysE type translocator NMB96_13520 PF02592 Putative vitamin uptake transporter NMB96_13535 PF05598 Transposase domain (DUF772) NMB96_13535 PF01609 Transposase DDE domain NMB96_13545 PF03551 Transcriptional regulator PadR-like family NMB96_13565 PF03653 Uncharacterised protein family (UPF0093) NMB96_13575 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NMB96_13580 PF07733 Bacterial DNA polymerase III alpha NTPase domain NMB96_13580 PF01336 OB-fold nucleic acid binding domain NMB96_13580 PF02811 PHP domain NMB96_13580 PF14579 Helix-hairpin-helix motif NMB96_13580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NMB96_13585 PF01351 Ribonuclease HII NMB96_13590 PF02684 Lipid-A-disaccharide synthetase NMB96_13595 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NMB96_13595 PF00132 Bacterial transferase hexapeptide (six repeats) NMB96_13600 PF07977 FabA-like domain NMB96_13605 PF00132 Bacterial transferase hexapeptide (six repeats) NMB96_13605 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NMB96_13615 PF07244 Surface antigen variable number repeat NMB96_13615 PF01103 Surface antigen NMB96_13620 PF02163 Peptidase family M50 NMB96_13620 PF17820 PDZ domain NMB96_13625 PF13288 DXP reductoisomerase C-terminal domain NMB96_13625 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NMB96_13625 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NMB96_13635 PF01255 Putative undecaprenyl diphosphate synthase NMB96_13640 PF01765 Ribosome recycling factor NMB96_13645 PF00696 Amino acid kinase family NMB96_13650 PF00072 Response regulator receiver domain NMB96_13650 PF00990 Diguanylate cyclase, GGDEF domain NMB96_13655 PF00889 Elongation factor TS NMB96_13660 PF00318 Ribosomal protein S2 NMB96_13665 PF02371 Transposase IS116/IS110/IS902 family NMB96_13665 PF01548 Transposase NMB96_13700 PF00557 Metallopeptidase family M24 NMB96_13705 PF08335 GlnD PII-uridylyltransferase NMB96_13705 PF01966 HD domain NMB96_13705 PF01909 Nucleotidyltransferase domain NMB96_13710 PF14602 Hexapeptide repeat of succinyl-transferase NMB96_13710 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NMB96_13710 PF00132 Bacterial transferase hexapeptide (six repeats) NMB96_13720 PF03960 ArsC family NMB96_13725 PF07687 Peptidase dimerisation domain NMB96_13725 PF01546 Peptidase family M20/M25/M40 NMB96_13735 PF00733 Asparagine synthase NMB96_13735 PF13537 Glutamine amidotransferase domain NMB96_13745 PF07715 TonB-dependent Receptor Plug Domain NMB96_13745 PF00593 TonB dependent receptor NMB96_13750 PF01804 Penicillin amidase NMB96_13755 PF00210 Ferritin-like domain NMB96_13760 PF05724 Thiopurine S-methyltransferase (TPMT) NMB96_13765 PF03989 DNA gyrase C-terminal domain, beta-propeller NMB96_13765 PF00521 DNA gyrase/topoisomerase IV, subunit A NMB96_13780 PF02321 Outer membrane efflux protein NMB96_13785 PF00529 HlyD membrane-fusion protein of T1SS NMB96_13785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_13790 PF07690 Major Facilitator Superfamily NMB96_13795 PF13676 TIR domain NMB96_13805 PF14310 Fibronectin type III-like domain NMB96_13805 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_13805 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMB96_13815 PF00854 POT family NMB96_13840 PF12802 MarR family NMB96_13845 PF01432 Peptidase family M3 NMB96_13850 PF00255 Glutathione peroxidase NMB96_13855 PF00175 Oxidoreductase NAD-binding domain NMB96_13855 PF00970 Oxidoreductase FAD-binding domain NMB96_13860 PF00005 ABC transporter NMB96_13865 PF05681 Fumarate hydratase (Fumerase) NMB96_13865 PF05683 Fumarase C-terminus NMB96_13880 PF00484 Carbonic anhydrase NMB96_13890 PF02253 Phospholipase A1 NMB96_13900 PF00313 'Cold-shock' DNA-binding domain NMB96_13915 PF00899 ThiF family NMB96_13920 PF01026 TatD related DNase NMB96_13935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_13935 PF02770 Acyl-CoA dehydrogenase, middle domain NMB96_13935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMB96_13945 PF02798 Glutathione S-transferase, N-terminal domain NMB96_13945 PF00043 Glutathione S-transferase, C-terminal domain NMB96_13950 PF13537 Glutamine amidotransferase domain NMB96_13950 PF00733 Asparagine synthase NMB96_13955 PF03358 NADPH-dependent FMN reductase NMB96_13960 PF00772 DnaB-like helicase N terminal domain NMB96_13960 PF03796 DnaB-like helicase C terminal domain NMB96_13965 PF00875 DNA photolyase NMB96_13965 PF03441 FAD binding domain of DNA photolyase NMB96_13970 PF00691 OmpA family NMB96_13970 PF05736 OprF membrane domain NMB96_13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_13975 PF03466 LysR substrate binding domain NMB96_13985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_13985 PF00529 HlyD membrane-fusion protein of T1SS NMB96_13990 PF00873 AcrB/AcrD/AcrF family NMB96_13995 PF00106 short chain dehydrogenase NMB96_14000 PF02321 Outer membrane efflux protein NMB96_14005 PF00990 Diguanylate cyclase, GGDEF domain NMB96_14015 PF00990 Diguanylate cyclase, GGDEF domain NMB96_14075 PF12704 MacB-like periplasmic core domain NMB96_14075 PF00005 ABC transporter NMB96_14075 PF02687 FtsX-like permease family NMB96_14115 PF01695 IstB-like ATP binding protein NMB96_14120 PF00665 Integrase core domain NMB96_14135 PF05394 Avirulence protein NMB96_14145 PF01668 SmpB protein NMB96_14155 PF03658 RnfH family Ubiquitin NMB96_14160 PF04355 SmpA / OmlA family NMB96_14165 PF01475 Ferric uptake regulator family NMB96_14170 PF02463 RecF/RecN/SMC N terminal domain NMB96_14175 PF01628 HrcA protein C terminal domain NMB96_14175 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NMB96_14180 PF01025 GrpE NMB96_14185 PF00012 Hsp70 protein NMB96_14190 PF00684 DnaJ central domain NMB96_14190 PF00226 DnaJ domain NMB96_14190 PF01556 DnaJ C terminal domain NMB96_14195 PF08543 Phosphomethylpyrimidine kinase NMB96_14220 PF03412 Peptidase C39 family NMB96_14220 PF00664 ABC transporter transmembrane region NMB96_14220 PF00005 ABC transporter NMB96_14225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_14225 PF03466 LysR substrate binding domain NMB96_14230 PF00664 ABC transporter transmembrane region NMB96_14230 PF00005 ABC transporter NMB96_14235 PF01205 Uncharacterized protein family UPF0029 NMB96_14240 PF03641 Possible lysine decarboxylase NMB96_14245 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_14245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMB96_14250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NMB96_14250 PF00364 Biotin-requiring enzyme NMB96_14250 PF02817 e3 binding domain NMB96_14255 PF16078 2-oxoglutarate dehydrogenase N-terminus NMB96_14255 PF00676 Dehydrogenase E1 component NMB96_14255 PF16870 2-oxoglutarate dehydrogenase C-terminal NMB96_14255 PF02779 Transketolase, pyrimidine binding domain NMB96_14265 PF08007 Cupin superfamily protein NMB96_14275 PF00206 Lyase NMB96_14275 PF08328 Adenylosuccinate lyase C-terminal NMB96_14280 PF00571 CBS domain NMB96_14280 PF03471 Transporter associated domain NMB96_14280 PF01595 Cyclin M transmembrane N-terminal domain NMB96_14285 PF10415 Fumarase C C-terminus NMB96_14285 PF00206 Lyase NMB96_14310 PF00005 ABC transporter NMB96_14315 PF00392 Bacterial regulatory proteins, gntR family NMB96_14325 PF00255 Glutathione peroxidase NMB96_14330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMB96_14330 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NMB96_14335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMB96_14335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMB96_14335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMB96_14340 PF04102 SlyX NMB96_14355 PF00356 Bacterial regulatory proteins, lacI family NMB96_14360 PF07690 Major Facilitator Superfamily NMB96_14365 PF00294 pfkB family carbohydrate kinase NMB96_14375 PF00809 Pterin binding enzyme NMB96_14375 PF02310 B12 binding domain NMB96_14375 PF02607 B12 binding domain NMB96_14375 PF02965 Vitamin B12 dependent methionine synthase, activation domain NMB96_14375 PF02574 Homocysteine S-methyltransferase NMB96_14385 PF02574 Homocysteine S-methyltransferase NMB96_14385 PF00809 Pterin binding enzyme NMB96_14385 PF02965 Vitamin B12 dependent methionine synthase, activation domain NMB96_14385 PF02607 B12 binding domain NMB96_14385 PF02310 B12 binding domain NMB96_14390 PF01209 ubiE/COQ5 methyltransferase family NMB96_14395 PF02770 Acyl-CoA dehydrogenase, middle domain NMB96_14395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_14395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMB96_14410 PF08206 Ribonuclease B OB domain NMB96_14410 PF08461 Ribonuclease R winged-helix domain NMB96_14410 PF00575 S1 RNA binding domain NMB96_14410 PF00773 RNB domain NMB96_14410 PF17876 Cold shock domain NMB96_14420 PF00588 SpoU rRNA Methylase family NMB96_14420 PF08032 RNA 2'-O ribose methyltransferase substrate binding NMB96_14425 PF00990 Diguanylate cyclase, GGDEF domain NMB96_14430 PF00929 Exonuclease NMB96_14440 PF01895 PhoU domain NMB96_14445 PF00005 ABC transporter NMB96_14450 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_14455 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_14460 PF12849 PBP superfamily domain NMB96_14465 PF12849 PBP superfamily domain NMB96_14480 PF00484 Carbonic anhydrase NMB96_14485 PF00916 Sulfate permease family NMB96_14485 PF01740 STAS domain NMB96_14490 PF00730 HhH-GPD superfamily base excision DNA repair protein NMB96_14490 PF10576 Iron-sulfur binding domain of endonuclease III NMB96_14490 PF00633 Helix-hairpin-helix motif NMB96_14500 PF00378 Enoyl-CoA hydratase/isomerase NMB96_14505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMB96_14505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NMB96_14510 PF00293 NUDIX domain NMB96_14515 PF00581 Rhodanese-like domain NMB96_14550 PF16326 ABC transporter C-terminal domain NMB96_14550 PF12848 ABC transporter NMB96_14550 PF00005 ABC transporter NMB96_14560 PF10672 S-adenosylmethionine-dependent methyltransferase NMB96_14560 PF02926 THUMP domain NMB96_14560 PF01170 Putative RNA methylase family UPF0020 NMB96_14565 PF01513 ATP-NAD kinase NMB96_14590 PF00929 Exonuclease NMB96_14590 PF08411 Exonuclease C-terminal NMB96_14595 PF01494 FAD binding domain NMB96_14600 PF00266 Aminotransferase class-V NMB96_14610 PF06052 3-hydroxyanthranilic acid dioxygenase NMB96_14615 PF00484 Carbonic anhydrase NMB96_14620 PF04299 Putative FMN-binding domain NMB96_14640 PF00152 tRNA synthetases class II (D, K and N) NMB96_14640 PF01336 OB-fold nucleic acid binding domain NMB96_14645 PF01521 Iron-sulphur cluster biosynthesis NMB96_14650 PF01250 Ribosomal protein S6 NMB96_14655 PF01084 Ribosomal protein S18 NMB96_14660 PF01281 Ribosomal protein L9, N-terminal domain NMB96_14660 PF03948 Ribosomal protein L9, C-terminal domain NMB96_14665 PF02463 RecF/RecN/SMC N terminal domain NMB96_14670 PF04354 ZipA, C-terminal FtsZ-binding domain NMB96_14680 PF00155 Aminotransferase class I and II NMB96_14685 PF03120 NAD-dependent DNA ligase OB-fold domain NMB96_14685 PF00533 BRCA1 C Terminus (BRCT) domain NMB96_14685 PF01653 NAD-dependent DNA ligase adenylation domain NMB96_14685 PF12826 Helix-hairpin-helix motif NMB96_14685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NMB96_14690 PF00152 tRNA synthetases class II (D, K and N) NMB96_14700 PF01008 Initiation factor 2 subunit family NMB96_14705 PF00521 DNA gyrase/topoisomerase IV, subunit A NMB96_14705 PF03989 DNA gyrase C-terminal domain, beta-propeller NMB96_14710 PF13360 PQQ-like domain NMB96_14725 PF01175 Urocanase Rossmann-like domain NMB96_14725 PF17392 Urocanase C-terminal domain NMB96_14725 PF17391 Urocanase N-terminal domain NMB96_14735 PF00221 Aromatic amino acid lyase NMB96_14740 PF07969 Amidohydrolase family NMB96_14775 PF01794 Ferric reductase like transmembrane component NMB96_14780 PF00174 Oxidoreductase molybdopterin binding domain NMB96_14785 PF00266 Aminotransferase class-V NMB96_14790 PF00800 Prephenate dehydratase NMB96_14790 PF01842 ACT domain NMB96_14790 PF01817 Chorismate mutase type II NMB96_14795 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMB96_14805 PF03544 Gram-negative bacterial TonB protein C-terminal NMB96_14810 PF02403 Seryl-tRNA synthetase N-terminal domain NMB96_14810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMB96_14815 PF03466 LysR substrate binding domain NMB96_14815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_14935 PF00672 HAMP domain NMB96_14935 PF02203 Tar ligand binding domain homologue NMB96_14935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_14940 PF00144 Beta-lactamase NMB96_14945 PF00672 HAMP domain NMB96_14945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_14945 PF02203 Tar ligand binding domain homologue NMB96_14970 PF04002 RadC-like JAB domain NMB96_14990 PF07693 KAP family P-loop domain NMB96_15005 PF01026 TatD related DNase NMB96_15075 PF00672 HAMP domain NMB96_15075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_15075 PF02203 Tar ligand binding domain homologue NMB96_15080 PF01494 FAD binding domain NMB96_15090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_15090 PF00512 His Kinase A (phospho-acceptor) domain NMB96_15090 PF08448 PAS fold NMB96_15090 PF13188 PAS domain NMB96_15090 PF00072 Response regulator receiver domain NMB96_15095 PF00512 His Kinase A (phospho-acceptor) domain NMB96_15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_15095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NMB96_15095 PF00672 HAMP domain NMB96_15095 PF00072 Response regulator receiver domain NMB96_15095 PF01627 Hpt domain NMB96_15100 PF06745 KaiC NMB96_15105 PF00072 Response regulator receiver domain NMB96_15105 PF13426 PAS domain NMB96_15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_15115 PF03918 Cytochrome C biogenesis protein NMB96_15120 PF08534 Redoxin NMB96_15125 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NMB96_15125 PF01578 Cytochrome C assembly protein NMB96_15130 PF03100 CcmE NMB96_15140 PF01578 Cytochrome C assembly protein NMB96_15145 PF00082 Subtilase family NMB96_15155 PF04542 Sigma-70 region 2 NMB96_15155 PF08281 Sigma-70, region 4 NMB96_15165 PF00034 Cytochrome c NMB96_15180 PF05523 WxcM-like, C-terminal NMB96_15200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMB96_15205 PF01943 Polysaccharide biosynthesis protein NMB96_15210 PF00535 Glycosyl transferase family 2 NMB96_15225 PF08241 Methyltransferase domain NMB96_15245 PF13579 Glycosyl transferase 4-like domain NMB96_15245 PF00534 Glycosyl transferases group 1 NMB96_15260 PF00005 ABC transporter NMB96_15265 PF00005 ABC transporter NMB96_15265 PF00664 ABC transporter transmembrane region NMB96_15270 PF07690 Major Facilitator Superfamily NMB96_15275 PF00296 Luciferase-like monooxygenase NMB96_15290 PF03471 Transporter associated domain NMB96_15290 PF01595 Cyclin M transmembrane N-terminal domain NMB96_15290 PF00571 CBS domain NMB96_15300 PF01384 Phosphate transporter family NMB96_15315 PF00986 DNA gyrase B subunit, carboxyl terminus NMB96_15315 PF00204 DNA gyrase B NMB96_15315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_15315 PF01751 Toprim domain NMB96_15325 PF06418 CTP synthase N-terminus NMB96_15325 PF00117 Glutamine amidotransferase class-I NMB96_15330 PF00793 DAHP synthetase I family NMB96_15340 PF03952 Enolase, N-terminal domain NMB96_15340 PF00113 Enolase, C-terminal TIM barrel domain NMB96_15345 PF04977 Septum formation initiator NMB96_15350 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NMB96_15355 PF02542 YgbB family NMB96_15360 PF01142 tRNA pseudouridine synthase D (TruD) NMB96_15365 PF01713 Smr domain NMB96_15370 PF01975 Survival protein SurE NMB96_15380 PF09335 SNARE associated Golgi protein NMB96_15385 PF01476 LysM domain NMB96_15385 PF01551 Peptidase family M23 NMB96_15395 PF01985 CRS1 / YhbY (CRM) domain NMB96_15400 PF01728 FtsJ-like methyltransferase NMB96_15405 PF00004 ATPase family associated with various cellular activities (AAA) NMB96_15405 PF17862 AAA+ lid domain NMB96_15405 PF06480 FtsH Extracellular NMB96_15405 PF01434 Peptidase family M41 NMB96_15410 PF00809 Pterin binding enzyme NMB96_15420 PF17209 Hfq protein NMB96_15425 PF16360 GTP-binding GTPase Middle Region NMB96_15425 PF01926 50S ribosome-binding GTPase NMB96_15425 PF13167 GTP-binding GTPase N-terminal NMB96_15430 PF02464 Competence-damaged protein NMB96_15440 PF03109 ABC1 family NMB96_15445 PF00717 Peptidase S24-like NMB96_15445 PF01726 LexA DNA binding domain NMB96_15450 PF00154 recA bacterial DNA recombination protein NMB96_15455 PF02631 RecX family NMB96_15460 PF02272 DHHA1 domain NMB96_15460 PF01411 tRNA synthetases class II (A) NMB96_15460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NMB96_15465 PF02599 Global regulator protein family NMB96_15475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_15475 PF08447 PAS fold NMB96_15475 PF13426 PAS domain NMB96_15480 PF17954 Quercetinase C-terminal cupin domain NMB96_15480 PF02678 Pirin NMB96_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_15485 PF03466 LysR substrate binding domain NMB96_15505 PF08543 Phosphomethylpyrimidine kinase NMB96_15505 PF02581 Thiamine monophosphate synthase NMB96_15520 PF02562 PhoH-like protein NMB96_15520 PF13638 PIN domain NMB96_15525 PF00578 AhpC/TSA family NMB96_15540 PF00701 Dihydrodipicolinate synthetase family NMB96_15550 PF11953 Domain of unknown function (DUF3470) NMB96_15550 PF00037 4Fe-4S binding domain NMB96_15560 PF08450 SMP-30/Gluconolactonase/LRE-like region NMB96_15565 PF13378 Enolase C-terminal domain-like NMB96_15565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NMB96_15570 PF01081 KDPG and KHG aldolase NMB96_15575 PF03466 LysR substrate binding domain NMB96_15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_15590 PF03442 Carbohydrate binding domain X2 NMB96_15590 PF00942 Cellulose binding domain NMB96_15605 PF16338 Domain of unknown function (DUF4968) NMB96_15605 PF17137 Domain of unknown function (DUF5110) NMB96_15605 PF01055 Glycosyl hydrolases family 31 NMB96_15615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NMB96_15615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NMB96_15625 PF00083 Sugar (and other) transporter NMB96_15645 PF01520 N-acetylmuramoyl-L-alanine amidase NMB96_15650 PF02649 Type I GTP cyclohydrolase folE2 NMB96_15660 PF12626 Polymerase A arginine-rich C-terminus NMB96_15660 PF01743 Poly A polymerase head domain NMB96_15660 PF12627 Probable RNA and SrmB- binding site of polymerase A NMB96_15665 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NMB96_15670 PF02548 Ketopantoate hydroxymethyltransferase NMB96_15675 PF02569 Pantoate-beta-alanine ligase NMB96_15680 PF02261 Aspartate decarboxylase NMB96_15685 PF00342 Phosphoglucose isomerase NMB96_15705 PF14310 Fibronectin type III-like domain NMB96_15705 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_15705 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMB96_15710 PF00474 Sodium:solute symporter family NMB96_15715 PF00563 EAL domain NMB96_15715 PF00990 Diguanylate cyclase, GGDEF domain NMB96_15715 PF00360 Phytochrome region NMB96_15715 PF01590 GAF domain NMB96_15720 PF02013 Cellulose or protein binding domain NMB96_15720 PF00150 Cellulase (glycosyl hydrolase family 5) NMB96_15725 PF00072 Response regulator receiver domain NMB96_15735 PF04551 GcpE protein NMB96_15740 PF01569 PAP2 superfamily NMB96_15745 PF07690 Major Facilitator Superfamily NMB96_15755 PF00892 EamA-like transporter family NMB96_15760 PF01565 FAD binding domain NMB96_15760 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NMB96_15765 PF01180 Dihydroorotate dehydrogenase NMB96_15780 PF00171 Aldehyde dehydrogenase family NMB96_15830 PF00535 Glycosyl transferase family 2 NMB96_15835 PF14883 Hypothetical glycosyl hydrolase family 13 NMB96_15835 PF01522 Polysaccharide deacetylase NMB96_15845 PF03073 TspO/MBR family NMB96_15850 PF03447 Homoserine dehydrogenase, NAD binding domain NMB96_15850 PF00696 Amino acid kinase family NMB96_15850 PF00742 Homoserine dehydrogenase NMB96_15850 PF01842 ACT domain NMB96_15850 PF13840 ACT domain NMB96_15855 PF08544 GHMP kinases C terminal NMB96_15855 PF00288 GHMP kinases N terminal domain NMB96_15865 PF00291 Pyridoxal-phosphate dependent enzyme NMB96_15865 PF14821 Threonine synthase N terminus NMB96_15875 PF00027 Cyclic nucleotide-binding domain NMB96_15875 PF13545 Crp-like helix-turn-helix domain NMB96_15880 PF13393 Histidyl-tRNA synthetase NMB96_15880 PF03129 Anticodon binding domain NMB96_15890 PF01634 ATP phosphoribosyltransferase NMB96_15890 PF08029 HisG, C-terminal domain NMB96_15895 PF00815 Histidinol dehydrogenase NMB96_15900 PF00155 Aminotransferase class I and II NMB96_15905 PF00475 Imidazoleglycerol-phosphate dehydratase NMB96_15910 PF00117 Glutamine amidotransferase class-I NMB96_15915 PF00977 Histidine biosynthesis protein NMB96_15920 PF00977 Histidine biosynthesis protein NMB96_15925 PF01502 Phosphoribosyl-AMP cyclohydrolase NMB96_15925 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NMB96_15945 PF03079 ARD/ARD' family NMB96_15950 PF00596 Class II Aldolase and Adducin N-terminal domain NMB96_15955 PF13520 Amino acid permease NMB96_15960 PF13520 Amino acid permease NMB96_15970 PF01842 ACT domain NMB96_15970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMB96_15970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMB96_15975 PF02913 FAD linked oxidases, C-terminal domain NMB96_15975 PF01565 FAD binding domain NMB96_15995 PF08207 Elongation factor P (EF-P) KOW-like domain NMB96_15995 PF09285 Elongation factor P, C-terminal NMB96_15995 PF01132 Elongation factor P (EF-P) OB domain NMB96_16000 PF00106 short chain dehydrogenase NMB96_16005 PF00682 HMGL-like NMB96_16010 PF00378 Enoyl-CoA hydratase/isomerase NMB96_16020 PF07664 Ferrous iron transport protein B C terminus NMB96_16020 PF02421 Ferrous iron transport protein B NMB96_16020 PF07670 Nucleoside recognition NMB96_16030 PF00155 Aminotransferase class I and II NMB96_16035 PF01113 Dihydrodipicolinate reductase, N-terminus NMB96_16035 PF05173 Dihydrodipicolinate reductase, C-terminus NMB96_16040 PF00117 Glutamine amidotransferase class-I NMB96_16040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NMB96_16050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NMB96_16050 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NMB96_16050 PF02142 MGS-like domain NMB96_16055 PF01272 Transcription elongation factor, GreA/GreB, C-term NMB96_16055 PF03449 Transcription elongation factor, N-terminal NMB96_16065 PF01368 DHH family NMB96_16065 PF02272 DHHA1 domain NMB96_16065 PF17768 RecJ OB domain NMB96_16080 PF04397 LytTr DNA-binding domain NMB96_16080 PF00072 Response regulator receiver domain NMB96_16090 PF00152 tRNA synthetases class II (D, K and N) NMB96_16090 PF01336 OB-fold nucleic acid binding domain NMB96_16095 PF00072 Response regulator receiver domain NMB96_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_16100 PF00072 Response regulator receiver domain NMB96_16100 PF01627 Hpt domain NMB96_16100 PF00512 His Kinase A (phospho-acceptor) domain NMB96_16105 PF00378 Enoyl-CoA hydratase/isomerase NMB96_16140 PF00501 AMP-binding enzyme NMB96_16140 PF13193 AMP-binding enzyme C-terminal domain NMB96_16150 PF00694 Aconitase C-terminal domain NMB96_16150 PF00330 Aconitase family (aconitate hydratase) NMB96_16165 PF00330 Aconitase family (aconitate hydratase) NMB96_16165 PF06434 Aconitate hydratase 2 N-terminus NMB96_16165 PF11791 Aconitate B N-terminal domain NMB96_16170 PF00561 alpha/beta hydrolase fold NMB96_16175 PF00563 EAL domain NMB96_16175 PF00990 Diguanylate cyclase, GGDEF domain NMB96_16175 PF03707 Bacterial signalling protein N terminal repeat NMB96_16180 PF01339 CheB methylesterase NMB96_16180 PF00072 Response regulator receiver domain NMB96_16185 PF03975 CheD chemotactic sensory transduction NMB96_16190 PF03705 CheR methyltransferase, all-alpha domain NMB96_16190 PF01739 CheR methyltransferase, SAM binding domain NMB96_16195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16195 PF02203 Tar ligand binding domain homologue NMB96_16195 PF00672 HAMP domain NMB96_16205 PF01584 CheW-like domain NMB96_16210 PF07238 PilZ domain NMB96_16210 PF07317 Flagellar regulator YcgR NMB96_16215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16215 PF00672 HAMP domain NMB96_16215 PF02203 Tar ligand binding domain homologue NMB96_16220 PF00672 HAMP domain NMB96_16220 PF02203 Tar ligand binding domain homologue NMB96_16220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16225 PF02203 Tar ligand binding domain homologue NMB96_16225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16225 PF00672 HAMP domain NMB96_16230 PF00672 HAMP domain NMB96_16230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16230 PF02203 Tar ligand binding domain homologue NMB96_16235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16235 PF00672 HAMP domain NMB96_16235 PF02203 Tar ligand binding domain homologue NMB96_16240 PF00924 Mechanosensitive ion channel NMB96_16240 PF12795 Mechanosensitive ion channel porin domain NMB96_16240 PF12794 Mechanosensitive ion channel inner membrane domain 1 NMB96_16245 PF02203 Tar ligand binding domain homologue NMB96_16245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16245 PF00672 HAMP domain NMB96_16250 PF00672 HAMP domain NMB96_16250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16250 PF02203 Tar ligand binding domain homologue NMB96_16275 PF17200 Single Cache domain 2 NMB96_16275 PF00672 HAMP domain NMB96_16275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16275 PF17200 Single Cache domain 2 NMB96_16275 PF00672 HAMP domain NMB96_16275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16285 PF00672 HAMP domain NMB96_16285 PF02203 Tar ligand binding domain homologue NMB96_16295 PF01548 Transposase NMB96_16295 PF02371 Transposase IS116/IS110/IS902 family NMB96_16300 PF01584 CheW-like domain NMB96_16300 PF09078 CheY binding NMB96_16300 PF02895 Signal transducing histidine kinase, homodimeric domain NMB96_16300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_16300 PF01627 Hpt domain NMB96_16305 PF00072 Response regulator receiver domain NMB96_16315 PF01584 CheW-like domain NMB96_16320 PF13614 AAA domain NMB96_16325 PF00691 OmpA family NMB96_16325 PF13677 Membrane MotB of proton-channel complex MotA/MotB NMB96_16330 PF01618 MotA/TolQ/ExbB proton channel family NMB96_16340 PF01381 Helix-turn-helix NMB96_16390 PF02895 Signal transducing histidine kinase, homodimeric domain NMB96_16390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_16390 PF01584 CheW-like domain NMB96_16390 PF01627 Hpt domain NMB96_16390 PF00072 Response regulator receiver domain NMB96_16395 PF04344 Chemotaxis phosphatase, CheZ NMB96_16400 PF00072 Response regulator receiver domain NMB96_16405 PF04545 Sigma-70, region 4 NMB96_16405 PF04542 Sigma-70 region 2 NMB96_16405 PF04539 Sigma-70 region 3 NMB96_16410 PF10609 NUBPL iron-transfer P-loop NTPase NMB96_16415 PF00448 SRP54-type protein, GTPase domain NMB96_16420 PF00771 FHIPEP family NMB96_16425 PF01312 FlhB HrpN YscU SpaS Family NMB96_16435 PF00990 Diguanylate cyclase, GGDEF domain NMB96_16440 PF13188 PAS domain NMB96_16440 PF03707 Bacterial signalling protein N terminal repeat NMB96_16440 PF00990 Diguanylate cyclase, GGDEF domain NMB96_16440 PF00563 EAL domain NMB96_16445 PF01311 Bacterial export proteins, family 1 NMB96_16450 PF01313 Bacterial export proteins, family 3 NMB96_16455 PF00813 FliP family NMB96_16460 PF04347 Flagellar biosynthesis protein, FliO NMB96_16465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NMB96_16470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NMB96_16470 PF02154 Flagellar motor switch protein FliM NMB96_16490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NMB96_16490 PF18269 T3SS EscN ATPase C-terminal domain NMB96_16500 PF14842 FliG N-terminal domain NMB96_16500 PF14841 FliG middle domain NMB96_16500 PF01706 FliG C-terminal domain NMB96_16505 PF08345 Flagellar M-ring protein C-terminal NMB96_16505 PF01514 Secretory protein of YscJ/FliF family NMB96_16510 PF02049 Flagellar hook-basal body complex protein FliE NMB96_16515 PF00534 Glycosyl transferases group 1 NMB96_16515 PF00535 Glycosyl transferase family 2 NMB96_16560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMB96_16560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMB96_16570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NMB96_16575 PF06490 Flagellar regulatory protein FleQ NMB96_16575 PF02954 Bacterial regulatory protein, Fis family NMB96_16575 PF00158 Sigma-54 interaction domain NMB96_16580 PF01339 CheB methylesterase NMB96_16580 PF00072 Response regulator receiver domain NMB96_16585 PF00309 Sigma-54 factor, Activator interacting domain (AID) NMB96_16585 PF04963 Sigma-54 factor, core binding domain NMB96_16585 PF04552 Sigma-54, DNA binding domain NMB96_16590 PF00196 Bacterial regulatory proteins, luxR family NMB96_16590 PF00072 Response regulator receiver domain NMB96_16605 PF02561 Flagellar protein FliS NMB96_16610 PF07195 Flagellar hook-associated protein 2 C-terminus NMB96_16610 PF02465 Flagellar hook-associated protein 2 N-terminus NMB96_16610 PF07196 Flagellin hook IN motif NMB96_16615 PF00700 Bacterial flagellin C-terminal helical region NMB96_16615 PF00669 Bacterial flagellin N-terminal helical region NMB96_16635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMB96_16635 PF07196 Flagellin hook IN motif NMB96_16640 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NMB96_16640 PF10135 Rod binding protein NMB96_16645 PF02119 Flagellar P-ring protein NMB96_16650 PF02107 Flagellar L-ring protein NMB96_16655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMB96_16655 PF00460 Flagella basal body rod protein NMB96_16660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMB96_16660 PF00460 Flagella basal body rod protein NMB96_16665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMB96_16665 PF00460 Flagella basal body rod protein NMB96_16665 PF07559 Flagellar basal body protein FlaE NMB96_16670 PF03963 Flagellar hook capping protein - N-terminal region NMB96_16675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NMB96_16675 PF00460 Flagella basal body rod protein NMB96_16685 PF00072 Response regulator receiver domain NMB96_16685 PF01584 CheW-like domain NMB96_16705 PF00512 His Kinase A (phospho-acceptor) domain NMB96_16705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_16710 PF00563 EAL domain NMB96_16710 PF00990 Diguanylate cyclase, GGDEF domain NMB96_16710 PF03707 Bacterial signalling protein N terminal repeat NMB96_16715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_16715 PF07730 Histidine kinase NMB96_16720 PF00990 Diguanylate cyclase, GGDEF domain NMB96_16720 PF00563 EAL domain NMB96_16720 PF03707 Bacterial signalling protein N terminal repeat NMB96_16735 PF12729 Four helix bundle sensory module for signal transduction NMB96_16735 PF00672 HAMP domain NMB96_16735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_16740 PF04356 Protein of unknown function (DUF489) NMB96_16750 PF00293 NUDIX domain NMB96_16755 PF02617 ATP-dependent Clp protease adaptor protein ClpS NMB96_16760 PF10431 C-terminal, D2-small domain, of ClpB protein NMB96_16760 PF17871 AAA lid domain NMB96_16760 PF02861 Clp amino terminal domain, pathogenicity island component NMB96_16760 PF00004 ATPase family associated with various cellular activities (AAA) NMB96_16760 PF07724 AAA domain (Cdc48 subfamily) NMB96_16765 PF01176 Translation initiation factor 1A / IF-1 NMB96_16770 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NMB96_16780 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_16785 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NMB96_16785 PF17854 FtsK alpha domain NMB96_16785 PF09397 Ftsk gamma domain NMB96_16785 PF01580 FtsK/SpoIIIE family NMB96_16795 PF03548 Outer membrane lipoprotein carrier protein LolA NMB96_16800 PF16193 AAA C-terminal domain NMB96_16800 PF00004 ATPase family associated with various cellular activities (AAA) NMB96_16800 PF12002 MgsA AAA+ ATPase C terminal NMB96_16805 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NMB96_16810 PF00108 Thiolase, N-terminal domain NMB96_16810 PF02803 Thiolase, C-terminal domain NMB96_16815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NMB96_16815 PF00378 Enoyl-CoA hydratase/isomerase NMB96_16815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NMB96_16825 PF00334 Nucleoside diphosphate kinase NMB96_16830 PF04055 Radical SAM superfamily NMB96_16840 PF13464 Domain of unknown function (DUF4115) NMB96_16850 PF13360 PQQ-like domain NMB96_16850 PF01011 PQQ enzyme repeat NMB96_16855 PF01926 50S ribosome-binding GTPase NMB96_16855 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NMB96_16860 PF03453 MoeA N-terminal region (domain I and II) NMB96_16860 PF03454 MoeA C-terminal region (domain IV) NMB96_16860 PF00994 Probable molybdopterin binding domain NMB96_16865 PF00899 ThiF family NMB96_16875 PF03372 Endonuclease/Exonuclease/phosphatase family NMB96_16885 PF03454 MoeA C-terminal region (domain IV) NMB96_16885 PF03453 MoeA N-terminal region (domain I and II) NMB96_16885 PF00994 Probable molybdopterin binding domain NMB96_16890 PF12804 MobA-like NTP transferase domain NMB96_16900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMB96_16900 PF10414 Sirohaem synthase dimerisation region NMB96_16900 PF14824 Sirohaem biosynthesis protein central NMB96_16905 PF00072 Response regulator receiver domain NMB96_16905 PF03861 ANTAR domain NMB96_16920 PF07690 Major Facilitator Superfamily NMB96_16925 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_16925 PF18267 Rubredoxin NAD+ reductase C-terminal domain NMB96_16925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NMB96_16925 PF04324 BFD-like [2Fe-2S] binding domain NMB96_16925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NMB96_16930 PF11723 Homotrimeric ring hydroxylase NMB96_16930 PF00355 Rieske [2Fe-2S] domain NMB96_16935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NMB96_16935 PF00384 Molybdopterin oxidoreductase NMB96_16935 PF04324 BFD-like [2Fe-2S] binding domain NMB96_16935 PF01568 Molydopterin dinucleotide binding domain NMB96_16940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NMB96_16955 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NMB96_16965 PF00483 Nucleotidyl transferase NMB96_16985 PF05974 Domain of unknown function (DUF892) NMB96_17005 PF01695 IstB-like ATP binding protein NMB96_17010 PF00665 Integrase core domain NMB96_17025 PF05394 Avirulence protein NMB96_17035 PF12951 Passenger-associated-transport-repeat NMB96_17040 PF03797 Autotransporter beta-domain NMB96_17040 PF00082 Subtilase family NMB96_17050 PF00512 His Kinase A (phospho-acceptor) domain NMB96_17050 PF00672 HAMP domain NMB96_17050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_17055 PF00486 Transcriptional regulatory protein, C terminal NMB96_17055 PF00072 Response regulator receiver domain NMB96_17065 PF06629 MltA-interacting protein MipA NMB96_17075 PF01494 FAD binding domain NMB96_17105 PF13426 PAS domain NMB96_17105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_17105 PF00072 Response regulator receiver domain NMB96_17130 PF07995 Glucose / Sorbosone dehydrogenase NMB96_17140 PF01062 Bestrophin, RFP-TM, chloride channel NMB96_17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_17145 PF00512 His Kinase A (phospho-acceptor) domain NMB96_17150 PF00072 Response regulator receiver domain NMB96_17150 PF00196 Bacterial regulatory proteins, luxR family NMB96_17155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NMB96_17180 PF02203 Tar ligand binding domain homologue NMB96_17180 PF00672 HAMP domain NMB96_17180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_17190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_17190 PF03466 LysR substrate binding domain NMB96_17205 PF01526 Tn3 transposase DDE domain NMB96_17205 PF13700 Domain of unknown function (DUF4158) NMB96_17280 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NMB96_17280 PF01648 4'-phosphopantetheinyl transferase superfamily NMB96_17290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMB96_17290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NMB96_17290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NMB96_17300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMB96_17310 PF00581 Rhodanese-like domain NMB96_17310 PF17773 UPF0176 acylphosphatase like domain NMB96_17315 PF00196 Bacterial regulatory proteins, luxR family NMB96_17315 PF00072 Response regulator receiver domain NMB96_17320 PF10150 Ribonuclease E/G family NMB96_17320 PF00575 S1 RNA binding domain NMB96_17320 PF12111 Polyribonucleotide phosphorylase C terminal NMB96_17325 PF01479 S4 domain NMB96_17325 PF00849 RNA pseudouridylate synthase NMB96_17330 PF02535 ZIP Zinc transporter NMB96_17340 PF01329 Pterin 4 alpha carbinolamine dehydratase NMB96_17345 PF01106 NifU-like domain NMB96_17360 PF05857 TraX protein NMB96_17390 PF02303 Helix-destabilising protein NMB96_17485 PF13700 Domain of unknown function (DUF4158) NMB96_17485 PF01526 Tn3 transposase DDE domain NMB96_17505 PF07519 Tannase and feruloyl esterase NMB96_17510 PF13086 AAA domain NMB96_17510 PF13087 AAA domain NMB96_17510 PF13195 Protein of unknown function (DUF4011) NMB96_17510 PF13086 AAA domain NMB96_17510 PF13087 AAA domain NMB96_17510 PF13195 Protein of unknown function (DUF4011) NMB96_17545 PF10544 T5orf172 domain NMB96_17580 PF13614 AAA domain NMB96_17615 PF00436 Single-strand binding protein family NMB96_17620 PF01131 DNA topoisomerase NMB96_17620 PF01751 Toprim domain NMB96_17625 PF00145 C-5 cytosine-specific DNA methylase NMB96_17640 PF02021 Uncharacterised protein family UPF0102 NMB96_17800 PF04002 RadC-like JAB domain NMB96_17845 PF00106 short chain dehydrogenase NMB96_17870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_17870 PF03466 LysR substrate binding domain NMB96_17930 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NMB96_17970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_17970 PF03466 LysR substrate binding domain NMB96_17985 PF13356 Arm DNA-binding domain NMB96_17985 PF00589 Phage integrase family NMB96_18000 PF00975 Thioesterase domain NMB96_18000 PF00668 Condensation domain NMB96_18000 PF13193 AMP-binding enzyme C-terminal domain NMB96_18000 PF00501 AMP-binding enzyme NMB96_18000 PF00550 Phosphopantetheine attachment site NMB96_18005 PF13193 AMP-binding enzyme C-terminal domain NMB96_18005 PF00668 Condensation domain NMB96_18005 PF00550 Phosphopantetheine attachment site NMB96_18005 PF00975 Thioesterase domain NMB96_18005 PF00501 AMP-binding enzyme NMB96_18015 PF00155 Aminotransferase class I and II NMB96_18025 PF01070 FMN-dependent dehydrogenase NMB96_18030 PF00583 Acetyltransferase (GNAT) family NMB96_18045 PF01066 CDP-alcohol phosphatidyltransferase NMB96_18050 PF08459 UvrC Helix-hairpin-helix N-terminal NMB96_18050 PF01541 GIY-YIG catalytic domain NMB96_18050 PF02151 UvrB/uvrC motif NMB96_18060 PF01451 Low molecular weight phosphotyrosine protein phosphatase NMB96_18065 PF02348 Cytidylyltransferase NMB96_18070 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NMB96_18075 PF00005 ABC transporter NMB96_18075 PF00664 ABC transporter transmembrane region NMB96_18085 PF01618 MotA/TolQ/ExbB proton channel family NMB96_18090 PF03772 Competence protein NMB96_18090 PF00753 Metallo-beta-lactamase superfamily NMB96_18100 PF00005 ABC transporter NMB96_18105 PF02687 FtsX-like permease family NMB96_18105 PF12704 MacB-like periplasmic core domain NMB96_18115 PF03937 Flavinator of succinate dehydrogenase NMB96_18120 PF13085 2Fe-2S iron-sulfur cluster binding domain NMB96_18130 PF00890 FAD binding domain NMB96_18130 PF02910 Fumarate reductase flavoprotein C-term NMB96_18135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NMB96_18140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NMB96_18150 PF01571 Aminomethyltransferase folate-binding domain NMB96_18155 PF00005 ABC transporter NMB96_18155 PF17912 MalK OB fold domain NMB96_18160 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NMB96_18160 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NMB96_18165 PF02685 Glucokinase NMB96_18170 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NMB96_18175 PF00920 Dehydratase family NMB96_18180 PF01081 KDPG and KHG aldolase NMB96_18185 PF00873 AcrB/AcrD/AcrF family NMB96_18190 PF00873 AcrB/AcrD/AcrF family NMB96_18195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_18205 PF00034 Cytochrome c NMB96_18245 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NMB96_18245 PF01627 Hpt domain NMB96_18245 PF00512 His Kinase A (phospho-acceptor) domain NMB96_18245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_18245 PF00072 Response regulator receiver domain NMB96_18245 PF00672 HAMP domain NMB96_18250 PF16921 Tex protein YqgF-like domain NMB96_18250 PF17674 HHH domain NMB96_18250 PF00575 S1 RNA binding domain NMB96_18250 PF09371 Tex-like protein N-terminal domain NMB96_18260 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NMB96_18260 PF01266 FAD dependent oxidoreductase NMB96_18275 PF00561 alpha/beta hydrolase fold NMB96_18285 PF01066 CDP-alcohol phosphatidyltransferase NMB96_18305 PF03618 Kinase/pyrophosphorylase NMB96_18310 PF00391 PEP-utilising enzyme, mobile domain NMB96_18310 PF02896 PEP-utilising enzyme, TIM barrel domain NMB96_18310 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NMB96_18315 PF00924 Mechanosensitive ion channel NMB96_18315 PF05552 Conserved TM helix NMB96_18320 PF00929 Exonuclease NMB96_18325 PF14437 MafB19-like deaminase NMB96_18330 PF01325 Iron dependent repressor, N-terminal DNA binding domain NMB96_18330 PF02742 Iron dependent repressor, metal binding and dimerisation domain NMB96_18335 PF01566 Natural resistance-associated macrophage protein NMB96_18340 PF00561 alpha/beta hydrolase fold NMB96_18360 PF05977 Transmembrane secretion effector NMB96_18365 PF07969 Amidohydrolase family NMB96_18375 PF00857 Isochorismatase family NMB96_18385 PF07730 Histidine kinase NMB96_18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_18390 PF00196 Bacterial regulatory proteins, luxR family NMB96_18390 PF00072 Response regulator receiver domain NMB96_18405 PF13195 Protein of unknown function (DUF4011) NMB96_18405 PF13087 AAA domain NMB96_18405 PF13086 AAA domain NMB96_18415 PF02540 NAD synthase NMB96_18415 PF00117 Glutamine amidotransferase class-I NMB96_18415 PF00958 GMP synthase C terminal domain NMB96_18420 PF00571 CBS domain NMB96_18420 PF00478 IMP dehydrogenase / GMP reductase domain NMB96_18425 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NMB96_18425 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NMB96_18435 PF00999 Sodium/hydrogen exchanger family NMB96_18435 PF02254 TrkA-N domain NMB96_18440 PF00483 Nucleotidyl transferase NMB96_18445 PF02719 Polysaccharide biosynthesis protein NMB96_18450 PF00953 Glycosyl transferase family 4 NMB96_18455 PF18073 Rubredoxin metal binding domain NMB96_18465 PF00216 Bacterial DNA-binding protein NMB96_18470 PF00575 S1 RNA binding domain NMB96_18475 PF02224 Cytidylate kinase NMB96_18480 PF00444 Ribosomal protein L36 NMB96_18490 PF04371 Porphyromonas-type peptidyl-arginine deiminase NMB96_18495 PF00795 Carbon-nitrogen hydrolase NMB96_18520 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_18525 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_18530 PF01547 Bacterial extracellular solute-binding protein NMB96_18545 PF00356 Bacterial regulatory proteins, lacI family NMB96_18555 PF03795 YCII-related domain NMB96_18560 PF02616 Segregation and condensation protein ScpA NMB96_18565 PF04079 Segregation and condensation complex subunit ScpB NMB96_18570 PF00849 RNA pseudouridylate synthase NMB96_18570 PF01479 S4 domain NMB96_18585 PF00795 Carbon-nitrogen hydrolase NMB96_18590 PF00155 Aminotransferase class I and II NMB96_18595 PF00005 ABC transporter NMB96_18600 PF03379 CcmB protein NMB96_18605 PF01578 Cytochrome C assembly protein NMB96_18615 PF03100 CcmE NMB96_18620 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NMB96_18620 PF01578 Cytochrome C assembly protein NMB96_18625 PF08534 Redoxin NMB96_18630 PF03918 Cytochrome C biogenesis protein NMB96_18640 PF00561 alpha/beta hydrolase fold NMB96_18650 PF00664 ABC transporter transmembrane region NMB96_18650 PF00005 ABC transporter NMB96_18655 PF00005 ABC transporter NMB96_18655 PF00664 ABC transporter transmembrane region NMB96_18660 PF01654 Cytochrome bd terminal oxidase subunit I NMB96_18665 PF02322 Cytochrome bd terminal oxidase subunit II NMB96_18685 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain NMB96_18685 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NMB96_18695 PF00171 Aldehyde dehydrogenase family NMB96_18700 PF00696 Amino acid kinase family NMB96_18700 PF01472 PUA domain NMB96_18715 PF00206 Lyase NMB96_18720 PF01118 Semialdehyde dehydrogenase, NAD binding domain NMB96_18730 PF00696 Amino acid kinase family NMB96_18730 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase NMB96_18735 PF01546 Peptidase family M20/M25/M40 NMB96_18735 PF07687 Peptidase dimerisation domain NMB96_18740 PF00764 Arginosuccinate synthase NMB96_18745 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NMB96_18745 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NMB96_18755 PF01406 tRNA synthetases class I (C) catalytic domain NMB96_18755 PF09190 DALR domain NMB96_18760 PF02657 Fe-S metabolism associated domain NMB96_18770 PF01258 Prokaryotic dksA/traR C4-type zinc finger NMB96_18775 PF01809 Putative membrane protein insertion efficiency factor NMB96_18780 PF01979 Amidohydrolase family NMB96_18785 PF08460 Bacterial SH3 domain NMB96_18785 PF01551 Peptidase family M23 NMB96_18795 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NMB96_18800 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NMB96_18820 PF01095 Pectinesterase NMB96_18825 PF00295 Glycosyl hydrolases family 28 NMB96_18840 PF13419 Haloacid dehalogenase-like hydrolase NMB96_18850 PF01979 Amidohydrolase family NMB96_18860 PF01132 Elongation factor P (EF-P) OB domain NMB96_18860 PF08207 Elongation factor P (EF-P) KOW-like domain NMB96_18860 PF09285 Elongation factor P, C-terminal NMB96_18865 PF04055 Radical SAM superfamily NMB96_18870 PF03707 Bacterial signalling protein N terminal repeat NMB96_18870 PF00990 Diguanylate cyclase, GGDEF domain NMB96_18870 PF00563 EAL domain NMB96_18870 PF13188 PAS domain NMB96_18880 PF00588 SpoU rRNA Methylase family NMB96_18885 PF00459 Inositol monophosphatase family NMB96_18890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NMB96_18890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NMB96_18895 PF00545 ribonuclease NMB96_18905 PF00005 ABC transporter NMB96_18905 PF12848 ABC transporter NMB96_18905 PF16326 ABC transporter C-terminal domain NMB96_18910 PF00271 Helicase conserved C-terminal domain NMB96_18910 PF00270 DEAD/DEAH box helicase NMB96_18910 PF03880 DbpA RNA binding domain NMB96_18915 PF00156 Phosphoribosyl transferase domain NMB96_18920 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NMB96_18925 PF07859 alpha/beta hydrolase fold NMB96_18930 PF02798 Glutathione S-transferase, N-terminal domain NMB96_18930 PF14497 Glutathione S-transferase, C-terminal domain NMB96_18935 PF00313 'Cold-shock' DNA-binding domain NMB96_18940 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NMB96_18945 PF07152 YaeQ protein NMB96_18955 PF00563 EAL domain NMB96_18955 PF00990 Diguanylate cyclase, GGDEF domain NMB96_18955 PF03707 Bacterial signalling protein N terminal repeat NMB96_18960 PF01435 Peptidase family M48 NMB96_18965 PF00749 tRNA synthetases class I (E and Q), catalytic domain NMB96_18970 PF00106 short chain dehydrogenase NMB96_18975 PF07879 PHB/PHA accumulation regulator DNA-binding domain NMB96_18975 PF05233 PHB accumulation regulatory domain NMB96_18990 PF01119 DNA mismatch repair protein, C-terminal domain NMB96_18990 PF08676 MutL C terminal dimerisation domain NMB96_18995 PF01520 N-acetylmuramoyl-L-alanine amidase NMB96_18995 PF11741 AMIN domain NMB96_19005 PF01256 Carbohydrate kinase NMB96_19005 PF03853 YjeF-related protein N-terminus NMB96_19010 PF08331 Domain of unknown function (DUF1730) NMB96_19015 PF02601 Exonuclease VII, large subunit NMB96_19015 PF13742 OB-fold nucleic acid binding domain NMB96_19025 PF03781 Sulfatase-modifying factor enzyme 1 NMB96_19030 PF01612 3'-5' exonuclease NMB96_19030 PF00570 HRDC domain NMB96_19060 PF01584 CheW-like domain NMB96_19065 PF00672 HAMP domain NMB96_19065 PF12729 Four helix bundle sensory module for signal transduction NMB96_19065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_19070 PF02245 Methylpurine-DNA glycosylase (MPG) NMB96_19075 PF00271 Helicase conserved C-terminal domain NMB96_19075 PF00270 DEAD/DEAH box helicase NMB96_19075 PF08494 DEAD/H associated NMB96_19085 PF04386 Stringent starvation protein B NMB96_19090 PF02798 Glutathione S-transferase, N-terminal domain NMB96_19090 PF00043 Glutathione S-transferase, C-terminal domain NMB96_19095 PF02167 Cytochrome C1 family NMB96_19100 PF00033 Cytochrome b/b6/petB NMB96_19100 PF00032 Cytochrome b(C-terminal)/b6/petD NMB96_19105 PF00355 Rieske [2Fe-2S] domain NMB96_19105 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NMB96_19110 PF01464 Transglycosylase SLT domain NMB96_19125 PF04055 Radical SAM superfamily NMB96_19125 PF01938 TRAM domain NMB96_19125 PF00919 Uncharacterized protein family UPF0004 NMB96_19130 PF02562 PhoH-like protein NMB96_19140 PF02130 Uncharacterized protein family UPF0054 NMB96_19150 PF00571 CBS domain NMB96_19150 PF03471 Transporter associated domain NMB96_19165 PF00171 Aldehyde dehydrogenase family NMB96_19175 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_19180 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_19190 PF00005 ABC transporter NMB96_19190 PF08402 TOBE domain NMB96_19195 PF02321 Outer membrane efflux protein NMB96_19200 PF07690 Major Facilitator Superfamily NMB96_19205 PF13533 Biotin-lipoyl like NMB96_19210 PF13416 Bacterial extracellular solute-binding protein NMB96_19215 PF00202 Aminotransferase class-III NMB96_19220 PF00120 Glutamine synthetase, catalytic domain NMB96_19225 PF07722 Peptidase C26 NMB96_19230 PF00120 Glutamine synthetase, catalytic domain NMB96_19235 PF01266 FAD dependent oxidoreductase NMB96_19240 PF00072 Response regulator receiver domain NMB96_19240 PF00990 Diguanylate cyclase, GGDEF domain NMB96_19245 PF07690 Major Facilitator Superfamily NMB96_19245 PF00083 Sugar (and other) transporter NMB96_19255 PF00384 Molybdopterin oxidoreductase NMB96_19260 PF02634 FdhD/NarQ family NMB96_19265 PF07690 Major Facilitator Superfamily NMB96_19270 PF00202 Aminotransferase class-III NMB96_19280 PF04286 Protein of unknown function (DUF445) NMB96_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_19285 PF00512 His Kinase A (phospho-acceptor) domain NMB96_19285 PF00672 HAMP domain NMB96_19285 PF01627 Hpt domain NMB96_19285 PF00072 Response regulator receiver domain NMB96_19285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NMB96_19290 PF00072 Response regulator receiver domain NMB96_19295 PF07690 Major Facilitator Superfamily NMB96_19305 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_19305 PF00107 Zinc-binding dehydrogenase NMB96_19310 PF00106 short chain dehydrogenase NMB96_19315 PF00440 Bacterial regulatory proteins, tetR family NMB96_19325 PF00106 short chain dehydrogenase NMB96_19330 PF08659 KR domain NMB96_19330 PF14765 Polyketide synthase dehydratase NMB96_19330 PF02801 Beta-ketoacyl synthase, C-terminal domain NMB96_19330 PF08240 Alcohol dehydrogenase GroES-like domain NMB96_19330 PF00109 Beta-ketoacyl synthase, N-terminal domain NMB96_19330 PF16197 Ketoacyl-synthetase C-terminal extension NMB96_19330 PF00698 Acyl transferase domain NMB96_19330 PF00550 Phosphopantetheine attachment site NMB96_19335 PF05088 Bacterial NAD-glutamate dehydrogenase NMB96_19345 PF00529 HlyD membrane-fusion protein of T1SS NMB96_19345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_19350 PF00873 AcrB/AcrD/AcrF family NMB96_19355 PF00356 Bacterial regulatory proteins, lacI family NMB96_19360 PF00381 PTS HPr component phosphorylation site NMB96_19360 PF05524 PEP-utilising enzyme, N-terminal NMB96_19360 PF00391 PEP-utilising enzyme, mobile domain NMB96_19360 PF02896 PEP-utilising enzyme, TIM barrel domain NMB96_19360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMB96_19365 PF00294 pfkB family carbohydrate kinase NMB96_19370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NMB96_19415 PF02355 Protein export membrane protein NMB96_19415 PF07549 SecD/SecF GG Motif NMB96_19420 PF02355 Protein export membrane protein NMB96_19420 PF13721 SecD export protein N-terminal TM region NMB96_19420 PF07549 SecD/SecF GG Motif NMB96_19425 PF02699 Preprotein translocase subunit NMB96_19430 PF01702 Queuine tRNA-ribosyltransferase NMB96_19435 PF02547 Queuosine biosynthesis protein NMB96_19475 PF00759 Glycosyl hydrolase family 9 NMB96_19475 PF02927 Cellulase N-terminal ig-like domain NMB96_19490 PF00037 4Fe-4S binding domain NMB96_19500 PF01467 Cytidylyltransferase-like NMB96_19510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_19510 PF00183 Hsp90 protein NMB96_19550 PF00593 TonB dependent receptor NMB96_19550 PF07715 TonB-dependent Receptor Plug Domain NMB96_19560 PF07532 Bacterial Ig-like domain (group 4) NMB96_19565 PF07532 Bacterial Ig-like domain (group 4) NMB96_19570 PF00593 TonB dependent receptor NMB96_19570 PF07715 TonB-dependent Receptor Plug Domain NMB96_19605 PF13520 Amino acid permease NMB96_19620 PF00557 Metallopeptidase family M24 NMB96_19620 PF01321 Creatinase/Prolidase N-terminal domain NMB96_19625 PF00171 Aldehyde dehydrogenase family NMB96_19630 PF00701 Dihydrodipicolinate synthetase family NMB96_19635 PF04324 BFD-like [2Fe-2S] binding domain NMB96_19635 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_19645 PF01266 FAD dependent oxidoreductase NMB96_19650 PF05544 Proline racemase NMB96_19660 PF02881 SRP54-type protein, helical bundle domain NMB96_19660 PF00448 SRP54-type protein, GTPase domain NMB96_19665 PF00730 HhH-GPD superfamily base excision DNA repair protein NMB96_19665 PF00633 Helix-hairpin-helix motif NMB96_19665 PF14815 NUDIX domain NMB96_19665 PF10576 Iron-sulfur binding domain of endonuclease III NMB96_19670 PF04362 Bacterial Fe(2+) trafficking NMB96_19680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_19680 PF13426 PAS domain NMB96_19680 PF00072 Response regulator receiver domain NMB96_19685 PF00893 Small Multidrug Resistance protein NMB96_19755 PF08212 Lipocalin-like domain NMB96_19765 PF12806 Acetyl-CoA dehydrogenase C-terminal like NMB96_19765 PF02770 Acyl-CoA dehydrogenase, middle domain NMB96_19765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_19765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMB96_19775 PF02780 Transketolase, C-terminal domain NMB96_19775 PF02779 Transketolase, pyrimidine binding domain NMB96_19775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NMB96_19795 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NMB96_19800 PF00753 Metallo-beta-lactamase superfamily NMB96_19800 PF16123 Hydroxyacylglutathione hydrolase C-terminus NMB96_19805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NMB96_19805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NMB96_19820 PF03808 Glycosyl transferase WecB/TagA/CpsF family NMB96_19835 PF14667 Polysaccharide biosynthesis C-terminal domain NMB96_19845 PF13439 Glycosyltransferase Family 4 NMB96_19845 PF00534 Glycosyl transferases group 1 NMB96_19865 PF02397 Bacterial sugar transferase NMB96_19885 PF13411 MerR HTH family regulatory protein NMB96_19890 PF00216 Bacterial DNA-binding protein NMB96_19895 PF03483 B3/4 domain NMB96_19895 PF01588 Putative tRNA binding domain NMB96_19895 PF03147 Ferredoxin-fold anticodon binding domain NMB96_19895 PF03484 tRNA synthetase B5 domain NMB96_19895 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NMB96_19900 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NMB96_19900 PF01409 tRNA synthetases class II core domain (F) NMB96_19905 PF00453 Ribosomal protein L20 NMB96_19910 PF01632 Ribosomal protein L35 NMB96_19915 PF00707 Translation initiation factor IF-3, C-terminal domain NMB96_19915 PF05198 Translation initiation factor IF-3, N-terminal domain NMB96_19920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NMB96_19920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NMB96_19920 PF02824 TGS domain NMB96_19920 PF03129 Anticodon binding domain NMB96_20005 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NMB96_20010 PF05101 Type IV secretory pathway, VirB3-like protein NMB96_20020 PF01464 Transglycosylase SLT domain NMB96_20025 PF00437 Type II/IV secretion system protein NMB96_20030 PF03743 Bacterial conjugation TrbI-like protein NMB96_20050 PF02534 Type IV secretory system Conjugative DNA transfer NMB96_20060 PF00589 Phage integrase family NMB96_20150 PF17757 UvrB interaction domain NMB96_20150 PF02151 UvrB/uvrC motif NMB96_20150 PF04851 Type III restriction enzyme, res subunit NMB96_20150 PF00271 Helicase conserved C-terminal domain NMB96_20150 PF12344 Ultra-violet resistance protein B NMB96_20155 PF07963 Prokaryotic N-terminal methylation motif NMB96_20155 PF00114 Pilin (bacterial filament) NMB96_20170 PF05567 Neisseria PilC beta-propeller domain NMB96_20190 PF07963 Prokaryotic N-terminal methylation motif NMB96_20190 PF00114 Pilin (bacterial filament) NMB96_20195 PF11892 Domain of unknown function (DUF3412) NMB96_20195 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NMB96_20195 PF03641 Possible lysine decarboxylase NMB96_20200 PF00593 TonB dependent receptor NMB96_20205 PF01914 MarC family integral membrane protein NMB96_20215 PF00462 Glutaredoxin NMB96_20220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NMB96_20220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NMB96_20230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NMB96_20230 PF02222 ATP-grasp domain NMB96_20235 PF00731 AIR carboxylase NMB96_20245 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NMB96_20245 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NMB96_20255 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NMB96_20255 PF03725 3' exoribonuclease family, domain 2 NMB96_20255 PF01138 3' exoribonuclease family, domain 1 NMB96_20255 PF00013 KH domain NMB96_20255 PF00575 S1 RNA binding domain NMB96_20260 PF00312 Ribosomal protein S15 NMB96_20265 PF01509 TruB family pseudouridylate synthase (N terminal domain) NMB96_20265 PF16198 tRNA pseudouridylate synthase B C-terminal domain NMB96_20265 PF09157 Pseudouridine synthase II TruB, C-terminal NMB96_20270 PF02033 Ribosome-binding factor A NMB96_20275 PF04760 Translation initiation factor IF-2, N-terminal region NMB96_20275 PF08364 Bacterial translation initiation factor IF-2 associated region NMB96_20275 PF11987 Translation-initiation factor 2 NMB96_20275 PF00009 Elongation factor Tu GTP binding domain NMB96_20280 PF13184 NusA-like KH domain NMB96_20280 PF08529 NusA N-terminal domain NMB96_20280 PF00575 S1 RNA binding domain NMB96_20285 PF17384 RimP C-terminal SH3 domain NMB96_20285 PF02576 RimP N-terminal domain NMB96_20295 PF00361 Proton-conducting membrane transporter NMB96_20300 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NMB96_20300 PF00361 Proton-conducting membrane transporter NMB96_20305 PF00361 Proton-conducting membrane transporter NMB96_20305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NMB96_20310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NMB96_20315 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NMB96_20320 PF12838 4Fe-4S dicluster domain NMB96_20325 PF00146 NADH dehydrogenase NMB96_20330 PF00384 Molybdopterin oxidoreductase NMB96_20330 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NMB96_20330 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal NMB96_20335 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NMB96_20335 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NMB96_20335 PF10531 SLBB domain NMB96_20345 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NMB96_20350 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NMB96_20355 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NMB96_20360 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NMB96_20375 PF00121 Triosephosphate isomerase NMB96_20380 PF00106 short chain dehydrogenase NMB96_20395 PF00563 EAL domain NMB96_20395 PF00990 Diguanylate cyclase, GGDEF domain NMB96_20395 PF03707 Bacterial signalling protein N terminal repeat NMB96_20410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NMB96_20410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMB96_20410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NMB96_20410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NMB96_20415 PF17848 Acetyl-coA carboxylase zinc finger domain NMB96_20415 PF01039 Carboxyl transferase domain NMB96_20420 PF00290 Tryptophan synthase alpha chain NMB96_20430 PF00291 Pyridoxal-phosphate dependent enzyme NMB96_20435 PF03466 LysR substrate binding domain NMB96_20435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_20440 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMB96_20445 PF01416 tRNA pseudouridine synthase NMB96_20460 PF01118 Semialdehyde dehydrogenase, NAD binding domain NMB96_20460 PF02774 Semialdehyde dehydrogenase, dimerisation domain NMB96_20465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NMB96_20465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NMB96_20470 PF01264 Chorismate synthase NMB96_20480 PF05175 Methyltransferase small domain NMB96_20485 PF02630 SCO1/SenC NMB96_20490 PF02666 Phosphatidylserine decarboxylase NMB96_20500 PF05872 Bacterial protein of unknown function (DUF853) NMB96_20510 PF00293 NUDIX domain NMB96_20530 PF01272 Transcription elongation factor, GreA/GreB, C-term NMB96_20530 PF03449 Transcription elongation factor, N-terminal NMB96_20535 PF04055 Radical SAM superfamily NMB96_20535 PF18693 TRAM domain NMB96_20535 PF00919 Uncharacterized protein family UPF0004 NMB96_20570 PF01555 DNA methylase NMB96_20625 PF00182 Chitinase class I NMB96_20645 PF03421 YopJ Serine/Threonine acetyltransferase NMB96_20805 PF01738 Dienelactone hydrolase family NMB96_20825 PF00692 dUTPase NMB96_20830 PF10609 NUBPL iron-transfer P-loop NTPase NMB96_20855 PF01431 Peptidase family M13 NMB96_20855 PF05649 Peptidase family M13 NMB96_20860 PF01431 Peptidase family M13 NMB96_20860 PF05649 Peptidase family M13 NMB96_20880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NMB96_20880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NMB96_20890 PF04235 Protein of unknown function (DUF418) NMB96_20895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NMB96_20905 PF00877 NlpC/P60 family NMB96_20915 PF13649 Methyltransferase domain NMB96_20920 PF00375 Sodium:dicarboxylate symporter family NMB96_20925 PF00245 Alkaline phosphatase NMB96_20930 PF01171 PP-loop family NMB96_20930 PF09179 TilS substrate binding domain NMB96_20930 PF11734 TilS substrate C-terminal domain NMB96_20935 PF02609 Exonuclease VII small subunit NMB96_20940 PF00348 Polyprenyl synthetase NMB96_20945 PF14521 Lysine-specific metallo-endopeptidase NMB96_20955 PF01523 Putative modulator of DNA gyrase NMB96_20960 PF04751 Protein of unknown function (DUF615) NMB96_20965 PF01523 Putative modulator of DNA gyrase NMB96_20975 PF13502 AsmA-like C-terminal region NMB96_20975 PF13116 Protein of unknown function NMB96_20980 PF00575 S1 RNA binding domain NMB96_20980 PF10150 Ribonuclease E/G family NMB96_20985 PF02545 Maf-like protein NMB96_21000 PF02590 Predicted SPOUT methyltransferase NMB96_21035 PF13603 Leucyl-tRNA synthetase, Domain 2 NMB96_21035 PF00133 tRNA synthetases class I (I, L, M and V) NMB96_21035 PF08264 Anticodon-binding domain of tRNA NMB96_21045 PF00085 Thioredoxin NMB96_21055 PF04070 Domain of unknown function (DUF378) NMB96_21070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_21070 PF03466 LysR substrate binding domain NMB96_21095 PF00005 ABC transporter NMB96_21095 PF00664 ABC transporter transmembrane region NMB96_21105 PF00999 Sodium/hydrogen exchanger family NMB96_21110 PF00144 Beta-lactamase NMB96_21115 PF03737 Aldolase/RraA NMB96_21130 PF00990 Diguanylate cyclase, GGDEF domain NMB96_21135 PF00849 RNA pseudouridylate synthase NMB96_21135 PF01479 S4 domain NMB96_21140 PF00563 EAL domain NMB96_21140 PF00990 Diguanylate cyclase, GGDEF domain NMB96_21140 PF08448 PAS fold NMB96_21145 PF00271 Helicase conserved C-terminal domain NMB96_21145 PF03880 DbpA RNA binding domain NMB96_21145 PF00270 DEAD/DEAH box helicase NMB96_21150 PF04542 Sigma-70 region 2 NMB96_21150 PF08281 Sigma-70, region 4 NMB96_21170 PF01494 FAD binding domain NMB96_21195 PF12833 Helix-turn-helix domain NMB96_21195 PF00730 HhH-GPD superfamily base excision DNA repair protein NMB96_21195 PF06029 AlkA N-terminal domain NMB96_21195 PF02805 Metal binding domain of Ada NMB96_21200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NMB96_21200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NMB96_21210 PF00654 Voltage gated chloride channel NMB96_21225 PF07715 TonB-dependent Receptor Plug Domain NMB96_21225 PF00593 TonB dependent receptor NMB96_21245 PF00082 Subtilase family NMB96_21245 PF01483 Proprotein convertase P-domain NMB96_21255 PF00082 Subtilase family NMB96_21255 PF01483 Proprotein convertase P-domain NMB96_21270 PF07690 Major Facilitator Superfamily NMB96_21275 PF03466 LysR substrate binding domain NMB96_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_21300 PF03466 LysR substrate binding domain NMB96_21300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_21310 PF00248 Aldo/keto reductase family NMB96_21315 PF16859 Tetracyclin repressor-like, C-terminal domain NMB96_21315 PF00440 Bacterial regulatory proteins, tetR family NMB96_21320 PF02321 Outer membrane efflux protein NMB96_21325 PF00873 AcrB/AcrD/AcrF family NMB96_21330 PF00529 HlyD membrane-fusion protein of T1SS NMB96_21330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NMB96_21340 PF01475 Ferric uptake regulator family NMB96_21345 PF00749 tRNA synthetases class I (E and Q), catalytic domain NMB96_21370 PF06123 Inner membrane protein CreD NMB96_21375 PF00512 His Kinase A (phospho-acceptor) domain NMB96_21375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_21375 PF00672 HAMP domain NMB96_21380 PF00072 Response regulator receiver domain NMB96_21380 PF00486 Transcriptional regulatory protein, C terminal NMB96_21385 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NMB96_21395 PF00271 Helicase conserved C-terminal domain NMB96_21395 PF02559 CarD-like/TRCF domain NMB96_21395 PF00270 DEAD/DEAH box helicase NMB96_21395 PF03461 TRCF domain NMB96_21395 PF17757 UvrB interaction domain NMB96_21435 PF10576 Iron-sulfur binding domain of endonuclease III NMB96_21435 PF00633 Helix-hairpin-helix motif NMB96_21435 PF00730 HhH-GPD superfamily base excision DNA repair protein NMB96_21440 PF00440 Bacterial regulatory proteins, tetR family NMB96_21440 PF17932 Tetracyclin repressor-like, C-terminal domain NMB96_21460 PF09078 CheY binding NMB96_21460 PF02895 Signal transducing histidine kinase, homodimeric domain NMB96_21460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_21460 PF01627 Hpt domain NMB96_21460 PF01584 CheW-like domain NMB96_21465 PF02203 Tar ligand binding domain homologue NMB96_21465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_21465 PF00672 HAMP domain NMB96_21470 PF01584 CheW-like domain NMB96_21475 PF13426 PAS domain NMB96_21475 PF00990 Diguanylate cyclase, GGDEF domain NMB96_21475 PF00563 EAL domain NMB96_21480 PF01739 CheR methyltransferase, SAM binding domain NMB96_21480 PF03705 CheR methyltransferase, all-alpha domain NMB96_21485 PF01339 CheB methylesterase NMB96_21485 PF00072 Response regulator receiver domain NMB96_21490 PF13091 PLD-like domain NMB96_21495 PF05649 Peptidase family M13 NMB96_21495 PF01431 Peptidase family M13 NMB96_21505 PF00300 Histidine phosphatase superfamily (branch 1) NMB96_21510 PF04493 Endonuclease V NMB96_21515 PF02678 Pirin NMB96_21515 PF05726 Pirin C-terminal cupin domain NMB96_21530 PF02678 Pirin NMB96_21530 PF05726 Pirin C-terminal cupin domain NMB96_21535 PF02554 Carbon starvation protein CstA NMB96_21535 PF13722 5TM C-terminal transporter carbon starvation CstA NMB96_21540 PF04328 Selenoprotein, putative NMB96_21550 PF13419 Haloacid dehalogenase-like hydrolase NMB96_21575 PF12804 MobA-like NTP transferase domain NMB96_21580 PF13478 XdhC Rossmann domain NMB96_21580 PF02625 XdhC and CoxI family NMB96_21585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NMB96_21585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NMB96_21590 PF00941 FAD binding domain in molybdopterin dehydrogenase NMB96_21590 PF03450 CO dehydrogenase flavoprotein C-terminal domain NMB96_21595 PF10518 TAT (twin-arginine translocation) pathway signal sequence NMB96_21595 PF01799 [2Fe-2S] binding domain NMB96_21595 PF00111 2Fe-2S iron-sulfur cluster binding domain NMB96_21600 PF00360 Phytochrome region NMB96_21600 PF00990 Diguanylate cyclase, GGDEF domain NMB96_21600 PF01590 GAF domain NMB96_21600 PF00563 EAL domain NMB96_21605 PF01979 Amidohydrolase family NMB96_21610 PF04052 TolB amino-terminal domain NMB96_21610 PF07676 WD40-like Beta Propeller Repeat NMB96_21615 PF00593 TonB dependent receptor NMB96_21615 PF07715 TonB-dependent Receptor Plug Domain NMB96_21620 PF00436 Single-strand binding protein family NMB96_21625 PF00348 Polyprenyl synthetase NMB96_21630 PF08245 Mur ligase middle domain NMB96_21645 PF01842 ACT domain NMB96_21645 PF00696 Amino acid kinase family NMB96_21650 PF02567 Phenazine biosynthesis-like protein NMB96_21655 PF02567 Phenazine biosynthesis-like protein NMB96_21665 PF02566 OsmC-like protein NMB96_21670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NMB96_21670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NMB96_21675 PF03652 Holliday junction resolvase NMB96_21680 PF02622 Uncharacterized ACR, COG1678 NMB96_21685 PF13673 Acetyltransferase (GNAT) domain NMB96_21685 PF03352 Methyladenine glycosylase NMB96_21685 PF00117 Glutamine amidotransferase class-I NMB96_21685 PF00958 GMP synthase C terminal domain NMB96_21685 PF13302 Acetyltransferase (GNAT) domain NMB96_21695 PF00437 Type II/IV secretion system protein NMB96_21700 PF00437 Type II/IV secretion system protein NMB96_21710 PF01168 Alanine racemase, N-terminal domain NMB96_21715 PF14748 Pyrroline-5-carboxylate reductase dimerisation NMB96_21715 PF03807 NADP oxidoreductase coenzyme F420-dependent NMB96_21725 PF01476 LysM domain NMB96_21725 PF01551 Peptidase family M23 NMB96_21750 PF02082 Transcriptional regulator NMB96_21755 PF01458 Uncharacterized protein family (UPF0051) NMB96_21760 PF00005 ABC transporter NMB96_21765 PF01458 Uncharacterized protein family (UPF0051) NMB96_21770 PF00266 Aminotransferase class-V NMB96_21780 PF00355 Rieske [2Fe-2S] domain NMB96_21790 PF00593 TonB dependent receptor NMB96_21790 PF07715 TonB-dependent Receptor Plug Domain NMB96_21795 PF13640 2OG-Fe(II) oxygenase superfamily NMB96_21795 PF18331 PKHD-type hydroxylase C-terminal domain NMB96_21820 PF02424 ApbE family NMB96_21825 PF00667 FAD binding domain NMB96_21825 PF00258 Flavodoxin NMB96_21825 PF00175 Oxidoreductase NAD-binding domain NMB96_21840 PF01546 Peptidase family M20/M25/M40 NMB96_21840 PF07687 Peptidase dimerisation domain NMB96_21850 PF01636 Phosphotransferase enzyme family NMB96_21855 PF00483 Nucleotidyl transferase NMB96_21860 PF00308 Bacterial dnaA protein NMB96_21865 PF01594 AI-2E family transporter NMB96_21875 PF00586 AIR synthase related protein, N-terminal domain NMB96_21875 PF02769 AIR synthase related protein, C-terminal domain NMB96_21880 PF00551 Formyl transferase NMB96_21900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NMB96_21905 PF01722 BolA-like protein NMB96_21910 PF00571 CBS domain NMB96_21910 PF01380 SIS domain NMB96_21925 PF03968 OstA-like protein NMB96_21930 PF00005 ABC transporter NMB96_21935 PF00309 Sigma-54 factor, Activator interacting domain (AID) NMB96_21935 PF04552 Sigma-54, DNA binding domain NMB96_21935 PF04963 Sigma-54 factor, core binding domain NMB96_21940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NMB96_21945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NMB96_21950 PF02603 HPr Serine kinase N terminus NMB96_21950 PF07475 HPr Serine kinase C-terminal domain NMB96_21955 PF03668 P-loop ATPase protein family NMB96_21965 PF00381 PTS HPr component phosphorylation site NMB96_21970 PF02896 PEP-utilising enzyme, TIM barrel domain NMB96_21970 PF00391 PEP-utilising enzyme, mobile domain NMB96_21970 PF05524 PEP-utilising enzyme, N-terminal NMB96_21975 PF01769 Divalent cation transporter NMB96_21975 PF00571 CBS domain NMB96_21975 PF03448 MgtE intracellular N domain NMB96_21980 PF00756 Putative esterase NMB96_21985 PF02322 Cytochrome bd terminal oxidase subunit II NMB96_21990 PF01654 Cytochrome bd terminal oxidase subunit I NMB96_22000 PF00324 Amino acid permease NMB96_22005 PF00544 Pectate lyase NMB96_22010 PF00561 alpha/beta hydrolase fold NMB96_22015 PF00196 Bacterial regulatory proteins, luxR family NMB96_22020 PF00324 Amino acid permease NMB96_22040 PF12706 Beta-lactamase superfamily domain NMB96_22045 PF04820 Tryptophan halogenase NMB96_22075 PF00376 MerR family regulatory protein NMB96_22075 PF09278 MerR, DNA binding NMB96_22080 PF07690 Major Facilitator Superfamily NMB96_22085 PF03738 Glutathionylspermidine synthase preATP-grasp NMB96_22110 PF04012 PspA/IM30 family NMB96_22125 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NMB96_22125 PF01243 Pyridoxamine 5'-phosphate oxidase NMB96_22130 PF01202 Shikimate kinase NMB96_22135 PF01761 3-dehydroquinate synthase NMB96_22145 PF01208 Uroporphyrinogen decarboxylase (URO-D) NMB96_22155 PF17149 Periplasmic sensor domain found in signal transduction proteins NMB96_22155 PF00672 HAMP domain NMB96_22155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_22155 PF00512 His Kinase A (phospho-acceptor) domain NMB96_22155 PF01627 Hpt domain NMB96_22155 PF00072 Response regulator receiver domain NMB96_22160 PF00672 HAMP domain NMB96_22160 PF00512 His Kinase A (phospho-acceptor) domain NMB96_22160 PF01627 Hpt domain NMB96_22160 PF00072 Response regulator receiver domain NMB96_22160 PF17149 Periplasmic sensor domain found in signal transduction proteins NMB96_22160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_22170 PF12833 Helix-turn-helix domain NMB96_22170 PF00512 His Kinase A (phospho-acceptor) domain NMB96_22170 PF07494 Two component regulator propeller NMB96_22170 PF00072 Response regulator receiver domain NMB96_22170 PF07495 Y_Y_Y domain NMB96_22170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_22175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_22175 PF00512 His Kinase A (phospho-acceptor) domain NMB96_22175 PF01627 Hpt domain NMB96_22175 PF00072 Response regulator receiver domain NMB96_22180 PF01627 Hpt domain NMB96_22180 PF00072 Response regulator receiver domain NMB96_22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_22180 PF00512 His Kinase A (phospho-acceptor) domain NMB96_22185 PF04264 YceI-like domain NMB96_22190 PF01292 Prokaryotic cytochrome b561 NMB96_22200 PF00313 'Cold-shock' DNA-binding domain NMB96_22210 PF03315 Serine dehydratase beta chain NMB96_22210 PF03313 Serine dehydratase alpha chain NMB96_22215 PF00561 alpha/beta hydrolase fold NMB96_22220 PF00696 Amino acid kinase family NMB96_22220 PF00742 Homoserine dehydrogenase NMB96_22220 PF03447 Homoserine dehydrogenase, NAD binding domain NMB96_22225 PF01053 Cys/Met metabolism PLP-dependent enzyme NMB96_22230 PF00561 alpha/beta hydrolase fold NMB96_22235 PF01551 Peptidase family M23 NMB96_22235 PF08460 Bacterial SH3 domain NMB96_22240 PF00009 Elongation factor Tu GTP binding domain NMB96_22240 PF16658 Class II release factor RF3, C-terminal domain NMB96_22245 PF03006 Haemolysin-III related NMB96_22250 PF05170 AsmA family NMB96_22260 PF00478 IMP dehydrogenase / GMP reductase domain NMB96_22260 PF00571 CBS domain NMB96_22265 PF00535 Glycosyl transferase family 2 NMB96_22270 PF00912 Transglycosylase NMB96_22275 PF01430 Hsp33 protein NMB96_22285 PF00593 TonB dependent receptor NMB96_22285 PF07715 TonB-dependent Receptor Plug Domain NMB96_22290 PF00440 Bacterial regulatory proteins, tetR family NMB96_22295 PF00561 alpha/beta hydrolase fold NMB96_22300 PF09317 Domain of unknown function (DUF1974) NMB96_22300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NMB96_22300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NMB96_22330 PF01597 Glycine cleavage H-protein NMB96_22335 PF01571 Aminomethyltransferase folate-binding domain NMB96_22335 PF08669 Glycine cleavage T-protein C-terminal barrel domain NMB96_22340 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NMB96_22345 PF03819 MazG nucleotide pyrophosphohydrolase domain NMB96_22350 PF00459 Inositol monophosphatase family NMB96_22355 PF00293 NUDIX domain NMB96_22360 PF00202 Aminotransferase class-III NMB96_22365 PF04452 RNA methyltransferase NMB96_22370 PF02685 Glucokinase NMB96_22385 PF00704 Glycosyl hydrolases family 18 NMB96_22385 PF01476 LysM domain NMB96_22390 PF00728 Glycosyl hydrolase family 20, catalytic domain NMB96_22390 PF02838 Glycosyl hydrolase family 20, domain 2 NMB96_22390 PF07691 PA14 domain NMB96_22400 PF01915 Glycosyl hydrolase family 3 C-terminal domain NMB96_22400 PF07691 PA14 domain NMB96_22400 PF14310 Fibronectin type III-like domain NMB96_22400 PF00933 Glycosyl hydrolase family 3 N terminal domain NMB96_22410 PF01301 Glycosyl hydrolases family 35 NMB96_22415 PF13520 Amino acid permease NMB96_22425 PF02056 Family 4 glycosyl hydrolase NMB96_22425 PF11975 Family 4 glycosyl hydrolase C-terminal domain NMB96_22435 PF17678 Glycosyl hydrolase family 92 N-terminal domain NMB96_22435 PF07971 Glycosyl hydrolase family 92 NMB96_22440 PF01301 Glycosyl hydrolases family 35 NMB96_22465 PF03932 CutC family NMB96_22470 PF01112 Asparaginase NMB96_22475 PF00092 von Willebrand factor type A domain NMB96_22475 PF12034 Domain of unknown function (DUF3520) NMB96_22475 PF12450 von Willebrand factor NMB96_22480 PF04542 Sigma-70 region 2 NMB96_22480 PF08281 Sigma-70, region 4 NMB96_22490 PF13302 Acetyltransferase (GNAT) domain NMB96_22500 PF01339 CheB methylesterase NMB96_22500 PF00072 Response regulator receiver domain NMB96_22505 PF00072 Response regulator receiver domain NMB96_22505 PF01627 Hpt domain NMB96_22505 PF02895 Signal transducing histidine kinase, homodimeric domain NMB96_22505 PF01584 CheW-like domain NMB96_22505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_22510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_22510 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NMB96_22515 PF01584 CheW-like domain NMB96_22520 PF00072 Response regulator receiver domain NMB96_22525 PF00072 Response regulator receiver domain NMB96_22530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NMB96_22530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NMB96_22540 PF03747 ADP-ribosylglycohydrolase NMB96_22545 PF00814 Glycoprotease family NMB96_22550 PF13307 Helicase C-terminal domain NMB96_22550 PF04851 Type III restriction enzyme, res subunit NMB96_22560 PF00905 Penicillin binding protein transpeptidase domain NMB96_22560 PF14814 Bifunctional transglycosylase second domain NMB96_22560 PF00912 Transglycosylase NMB96_22565 PF00535 Glycosyl transferase family 2 NMB96_22575 PF13291 ACT domain NMB96_22575 PF04607 Region found in RelA / SpoT proteins NMB96_22575 PF02824 TGS domain NMB96_22580 PF08042 PqqA family NMB96_22585 PF12706 Beta-lactamase superfamily domain NMB96_22590 PF03070 TENA/THI-4/PQQC family NMB96_22595 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NMB96_22600 PF13186 Iron-sulfur cluster-binding domain NMB96_22600 PF04055 Radical SAM superfamily NMB96_22610 PF02685 Glucokinase NMB96_22620 PF11898 Domain of unknown function (DUF3418) NMB96_22620 PF00270 DEAD/DEAH box helicase NMB96_22620 PF00271 Helicase conserved C-terminal domain NMB96_22620 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NMB96_22620 PF04408 Helicase associated domain (HA2) NMB96_22625 PF00210 Ferritin-like domain NMB96_22630 PF00270 DEAD/DEAH box helicase NMB96_22630 PF00271 Helicase conserved C-terminal domain NMB96_22630 PF00570 HRDC domain NMB96_22630 PF16124 RecQ zinc-binding NMB96_22630 PF09382 RQC domain NMB96_22645 PF00849 RNA pseudouridylate synthase NMB96_22645 PF01479 S4 domain NMB96_22655 PF02203 Tar ligand binding domain homologue NMB96_22655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_22655 PF00672 HAMP domain NMB96_22665 PF01810 LysE type translocator NMB96_22670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_22670 PF03466 LysR substrate binding domain NMB96_22680 PF13426 PAS domain NMB96_22680 PF07536 HWE histidine kinase NMB96_22680 PF13581 Histidine kinase-like ATPase domain NMB96_22685 PF06508 Queuosine biosynthesis protein QueC NMB96_22695 PF13356 Arm DNA-binding domain NMB96_22695 PF00589 Phage integrase family NMB96_22715 PF13148 Protein of unknown function (DUF3987) NMB96_22765 PF13614 AAA domain NMB96_22780 PF00248 Aldo/keto reductase family NMB96_22785 PF04055 Radical SAM superfamily NMB96_22795 PF00691 OmpA family NMB96_22800 PF07676 WD40-like Beta Propeller Repeat NMB96_22800 PF04052 TolB amino-terminal domain NMB96_22810 PF02472 Biopolymer transport protein ExbD/TolR NMB96_22815 PF01618 MotA/TolQ/ExbB proton channel family NMB96_22820 PF03061 Thioesterase superfamily NMB96_22825 PF17864 RuvB AAA lid domain NMB96_22825 PF05491 RuvB C-terminal winged helix domain NMB96_22825 PF05496 Holliday junction DNA helicase RuvB P-loop domain NMB96_22830 PF02705 K+ potassium transporter NMB96_22840 PF07499 RuvA, C-terminal domain NMB96_22840 PF01330 RuvA N terminal domain NMB96_22845 PF02075 Crossover junction endodeoxyribonuclease RuvC NMB96_22850 PF01709 Transcriptional regulator NMB96_22865 PF01336 OB-fold nucleic acid binding domain NMB96_22865 PF00152 tRNA synthetases class II (D, K and N) NMB96_22865 PF02938 GAD domain NMB96_22885 PF07690 Major Facilitator Superfamily NMB96_22895 PF05506 Domain of unknown function (DUF756) NMB96_22895 PF04185 Phosphoesterase family NMB96_22905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_22905 PF03466 LysR substrate binding domain NMB96_22910 PF13406 Transglycosylase SLT domain NMB96_22915 PF00005 ABC transporter NMB96_22915 PF12848 ABC transporter NMB96_22920 PF07715 TonB-dependent Receptor Plug Domain NMB96_22920 PF00593 TonB dependent receptor NMB96_22925 PF07715 TonB-dependent Receptor Plug Domain NMB96_22925 PF00593 TonB dependent receptor NMB96_22930 PF00593 TonB dependent receptor NMB96_22930 PF07715 TonB-dependent Receptor Plug Domain NMB96_22935 PF00067 Cytochrome P450 NMB96_22940 PF02254 TrkA-N domain NMB96_22940 PF00999 Sodium/hydrogen exchanger family NMB96_22950 PF07715 TonB-dependent Receptor Plug Domain NMB96_22950 PF00593 TonB dependent receptor NMB96_22950 PF07660 Secretin and TonB N terminus short domain NMB96_22955 PF07478 D-ala D-ala ligase C-terminus NMB96_22955 PF01820 D-ala D-ala ligase N-terminus NMB96_22960 PF06276 Ferric iron reductase FhuF-like transporter NMB96_22960 PF04183 IucA / IucC family NMB96_22965 PF07690 Major Facilitator Superfamily NMB96_22970 PF06276 Ferric iron reductase FhuF-like transporter NMB96_22970 PF04183 IucA / IucC family NMB96_22975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NMB96_22975 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NMB96_22990 PF02277 Phosphoribosyltransferase NMB96_23000 PF07715 TonB-dependent Receptor Plug Domain NMB96_23000 PF00593 TonB dependent receptor NMB96_23005 PF01053 Cys/Met metabolism PLP-dependent enzyme NMB96_23015 PF07724 AAA domain (Cdc48 subfamily) NMB96_23015 PF17871 AAA lid domain NMB96_23015 PF02861 Clp amino terminal domain, pathogenicity island component NMB96_23015 PF10431 C-terminal, D2-small domain, of ClpB protein NMB96_23015 PF00004 ATPase family associated with various cellular activities (AAA) NMB96_23020 PF00005 ABC transporter NMB96_23025 PF00528 Binding-protein-dependent transport system inner membrane component NMB96_23030 PF09084 NMT1/THI5 like NMB96_23035 PF00248 Aldo/keto reductase family NMB96_23040 PF00296 Luciferase-like monooxygenase NMB96_23045 PF00593 TonB dependent receptor NMB96_23045 PF07715 TonB-dependent Receptor Plug Domain NMB96_23050 PF01541 GIY-YIG catalytic domain NMB96_23085 PF00593 TonB dependent receptor NMB96_23085 PF07715 TonB-dependent Receptor Plug Domain NMB96_23090 PF02358 Trehalose-phosphatase NMB96_23095 PF00723 Glycosyl hydrolases family 15 NMB96_23100 PF00982 Glycosyltransferase family 20 NMB96_23105 PF01011 PQQ enzyme repeat NMB96_23110 PF00672 HAMP domain NMB96_23110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_23110 PF02203 Tar ligand binding domain homologue NMB96_23115 PF04134 Protein of unknown function, DUF393 NMB96_23125 PF02578 Multi-copper polyphenol oxidoreductase laccase NMB96_23130 PF00849 RNA pseudouridylate synthase NMB96_23135 PF13525 Outer membrane lipoprotein NMB96_23145 PF02540 NAD synthase NMB96_23145 PF00795 Carbon-nitrogen hydrolase NMB96_23165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NMB96_23165 PF03466 LysR substrate binding domain NMB96_23170 PF02629 CoA binding domain NMB96_23170 PF00549 CoA-ligase NMB96_23175 PF00549 CoA-ligase NMB96_23175 PF08442 ATP-grasp domain NMB96_23180 PF00512 His Kinase A (phospho-acceptor) domain NMB96_23180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_23185 PF00158 Sigma-54 interaction domain NMB96_23185 PF00072 Response regulator receiver domain NMB96_23185 PF02954 Bacterial regulatory protein, Fis family NMB96_23195 PF02661 Fic/DOC family NMB96_23200 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NMB96_23200 PF00437 Type II/IV secretion system protein NMB96_23205 PF07963 Prokaryotic N-terminal methylation motif NMB96_23205 PF00114 Pilin (bacterial filament) NMB96_23210 PF00482 Type II secretion system (T2SS), protein F NMB96_23215 PF01478 Type IV leader peptidase family NMB96_23215 PF06750 Bacterial Peptidase A24 N-terminal domain NMB96_23220 PF01121 Dephospho-CoA kinase NMB96_23235 PF11808 Phosphate regulon sensor protein PhoR NMB96_23235 PF00989 PAS fold NMB96_23235 PF00512 His Kinase A (phospho-acceptor) domain NMB96_23235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NMB96_23240 PF00486 Transcriptional regulatory protein, C terminal NMB96_23240 PF00072 Response regulator receiver domain NMB96_23245 PF18030 RimK PreATP-grasp domain NMB96_23245 PF08443 RimK-like ATP-grasp domain NMB96_23255 PF00128 Alpha amylase, catalytic domain NMB96_23255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NMB96_23295 PF02203 Tar ligand binding domain homologue NMB96_23295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NMB96_23295 PF00672 HAMP domain NMB96_23305 PF09335 SNARE associated Golgi protein NMB96_23310 PF03466 LysR substrate binding domain NMB96_23310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family