##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM2449901v1 #!genome-build-accession NCBI_Assembly:GCA_024499015.1 #!annotation-date 06/08/2022 10:00:17 #!annotation-source NCBI ##sequence-region CP098604.1 1 5214437 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=453602 CP098604.1 Genbank region 1 5214437 . + . ID=CP098604.1:1..5214437;Dbxref=taxon:453602;Is_circular=true;Name=ANONYMOUS;collection-date=2022;country=USA: PA;gbkey=Src;genome=chromosome;isolation-source=leaf sample;mol_type=genomic DNA;nat-host=geranium;pathovar=pelargonii;strain=OSU493 CP098604.1 Genbank gene 781 1020 . - . ID=gene-NDY25_00010;Name=NDY25_00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00010 CP098604.1 Protein Homology CDS 781 1020 . - 0 ID=cds-UUF02525.1;Parent=gene-NDY25_00010;Dbxref=NCBI_GP:UUF02525.1;Name=UUF02525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490393.1;locus_tag=NDY25_00010;product=hypothetical protein;protein_id=UUF02525.1;transl_table=11 CP098604.1 Genbank gene 1034 1255 . - . ID=gene-NDY25_00015;Name=NDY25_00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00015 CP098604.1 GeneMarkS-2+ CDS 1034 1255 . - 0 ID=cds-UUF02526.1;Parent=gene-NDY25_00015;Dbxref=NCBI_GP:UUF02526.1;Name=UUF02526.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_00015;product=hypothetical protein;protein_id=UUF02526.1;transl_table=11 CP098604.1 Genbank pseudogene 1370 1423 . - . ID=gene-NDY25_00020;Name=NDY25_00020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00020;pseudo=true CP098604.1 Protein Homology CDS 1370 1423 . - 0 ID=cds-NDY25_00020;Parent=gene-NDY25_00020;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014369.2;locus_tag=NDY25_00020;product=G5P family DNA-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 1489 1539 . - . ID=gene-NDY25_00025;Name=NDY25_00025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00025;pseudo=true CP098604.1 Protein Homology CDS 1489 1539 . - 0 ID=cds-NDY25_00025;Parent=gene-NDY25_00025;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014369.2;locus_tag=NDY25_00025;product=DNA-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 1551 2488 . - . ID=gene-NDY25_00030;Name=NDY25_00030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00030;pseudo=true CP098604.1 Protein Homology CDS 1551 2488 . - 0 ID=cds-NDY25_00030;Parent=gene-NDY25_00030;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154894.1;locus_tag=NDY25_00030;product=inovirus-type Gp2 protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2580 2756 . - . ID=gene-NDY25_00035;Name=NDY25_00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00035 CP098604.1 Protein Homology CDS 2580 2756 . - 0 ID=cds-UUF02527.1;Parent=gene-NDY25_00035;Dbxref=NCBI_GP:UUF02527.1;Name=UUF02527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173011.1;locus_tag=NDY25_00035;product=hypothetical protein;protein_id=UUF02527.1;transl_table=11 CP098604.1 Genbank gene 2749 2952 . - . ID=gene-NDY25_00040;Name=NDY25_00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00040 CP098604.1 Protein Homology CDS 2749 2952 . - 0 ID=cds-UUF02528.1;Parent=gene-NDY25_00040;Dbxref=NCBI_GP:UUF02528.1;Name=UUF02528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115348.1;locus_tag=NDY25_00040;product=hypothetical protein;protein_id=UUF02528.1;transl_table=11 CP098604.1 Genbank gene 2945 3163 . - . ID=gene-NDY25_00045;Name=NDY25_00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00045 CP098604.1 GeneMarkS-2+ CDS 2945 3163 . - 0 ID=cds-UUF02529.1;Parent=gene-NDY25_00045;Dbxref=NCBI_GP:UUF02529.1;Name=UUF02529.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_00045;product=hypothetical protein;protein_id=UUF02529.1;transl_table=11 CP098604.1 Genbank gene 3286 3762 . + . ID=gene-NDY25_00050;Name=NDY25_00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00050 CP098604.1 Protein Homology CDS 3286 3762 . + 0 ID=cds-UUF02530.1;Parent=gene-NDY25_00050;Dbxref=NCBI_GP:UUF02530.1;Name=UUF02530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174123.1;locus_tag=NDY25_00050;product=DUF3693 domain-containing protein;protein_id=UUF02530.1;transl_table=11 CP098604.1 Genbank gene 4274 4606 . - . ID=gene-NDY25_00055;Name=NDY25_00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00055 CP098604.1 Protein Homology CDS 4274 4606 . - 0 ID=cds-UUF02531.1;Parent=gene-NDY25_00055;Dbxref=NCBI_GP:UUF02531.1;Name=UUF02531.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: protein motif:HMM:NF017355.2;locus_tag=NDY25_00055;product=SEC-C metal-binding domain-containing protein;protein_id=UUF02531.1;transl_table=11 CP098604.1 Genbank pseudogene 5198 6999 . - . ID=gene-NDY25_00060;Name=NDY25_00060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00060;pseudo=true CP098604.1 Protein Homology CDS 5198 6999 . - 0 ID=cds-NDY25_00060;Parent=gene-NDY25_00060;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507815.1;locus_tag=NDY25_00060;product=transmembrane repetitive protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 7013 7612 . - . ID=gene-NDY25_00065;Name=NDY25_00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00065 CP098604.1 Protein Homology CDS 7013 7612 . - 0 ID=cds-UUF02532.1;Parent=gene-NDY25_00065;Dbxref=NCBI_GP:UUF02532.1;Name=UUF02532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410314.1;locus_tag=NDY25_00065;product=NfuA family Fe-S biogenesis protein;protein_id=UUF02532.1;transl_table=11 CP098604.1 Genbank gene 7701 8057 . + . ID=gene-NDY25_00070;Name=NDY25_00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00070 CP098604.1 Protein Homology CDS 7701 8057 . + 0 ID=cds-UUF02533.1;Parent=gene-NDY25_00070;Dbxref=NCBI_GP:UUF02533.1;Name=UUF02533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090260.1;locus_tag=NDY25_00070;product=4a-hydroxytetrahydrobiopterin dehydratase;protein_id=UUF02533.1;transl_table=11 CP098604.1 Genbank gene 8054 8476 . + . ID=gene-NDY25_00075;Name=NDY25_00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00075 CP098604.1 Protein Homology CDS 8054 8476 . + 0 ID=cds-UUF02534.1;Parent=gene-NDY25_00075;Dbxref=NCBI_GP:UUF02534.1;Name=UUF02534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269750.1;locus_tag=NDY25_00075;product=energy transducer TonB;protein_id=UUF02534.1;transl_table=11 CP098604.1 Genbank gene 8737 9555 . + . ID=gene-NDY25_00080;Name=zupT;gbkey=Gene;gene=zupT;gene_biotype=protein_coding;locus_tag=NDY25_00080 CP098604.1 Protein Homology CDS 8737 9555 . + 0 ID=cds-UUF02535.1;Parent=gene-NDY25_00080;Dbxref=NCBI_GP:UUF02535.1;Name=UUF02535.1;gbkey=CDS;gene=zupT;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575667.1;locus_tag=NDY25_00080;product=zinc transporter ZupT;protein_id=UUF02535.1;transl_table=11 CP098604.1 Genbank gene 9582 10568 . - . ID=gene-NDY25_00085;Name=NDY25_00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00085 CP098604.1 Protein Homology CDS 9582 10568 . - 0 ID=cds-UUF02536.1;Parent=gene-NDY25_00085;Dbxref=NCBI_GP:UUF02536.1;Name=UUF02536.1;Ontology_term=GO:0001522,GO:0009451,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303869.1;locus_tag=NDY25_00085;product=RluA family pseudouridine synthase;protein_id=UUF02536.1;transl_table=11 CP098604.1 Genbank pseudogene 10972 14708 . + . ID=gene-NDY25_00090;Name=rne;gbkey=Gene;gene=rne;gene_biotype=pseudogene;locus_tag=NDY25_00090;pseudo=true CP098604.1 Protein Homology CDS 10972 14708 . + 0 ID=cds-NDY25_00090;Parent=gene-NDY25_00090;Note=frameshifted;Ontology_term=GO:0006396,GO:0003723,GO:0008995;gbkey=CDS;gene=rne;go_function=RNA binding|0003723||IEA,ribonuclease E activity|0008995||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471921.1;locus_tag=NDY25_00090;product=ribonuclease E;pseudo=true;transl_table=11 CP098604.1 Genbank gene 15063 15710 . - . ID=gene-NDY25_00095;Name=NDY25_00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00095 CP098604.1 Protein Homology CDS 15063 15710 . - 0 ID=cds-UUF02537.1;Parent=gene-NDY25_00095;Dbxref=NCBI_GP:UUF02537.1;Name=UUF02537.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408972.1;locus_tag=NDY25_00095;product=response regulator;protein_id=UUF02537.1;transl_table=11 CP098604.1 Genbank gene 15920 16681 . - . ID=gene-NDY25_00100;Name=NDY25_00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00100 CP098604.1 Protein Homology CDS 15920 16681 . - 0 ID=cds-UUF02538.1;Parent=gene-NDY25_00100;Dbxref=NCBI_GP:UUF02538.1;Name=UUF02538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373348.1;locus_tag=NDY25_00100;product=sulfurtransferase;protein_id=UUF02538.1;transl_table=11 CP098604.1 Genbank gene 16717 17082 . - . ID=gene-NDY25_00105;Name=NDY25_00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00105 CP098604.1 Protein Homology CDS 16717 17082 . - 0 ID=cds-UUF02539.1;Parent=gene-NDY25_00105;Dbxref=NCBI_GP:UUF02539.1;Name=UUF02539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301518.1;locus_tag=NDY25_00105;product=DUF6164 family protein;protein_id=UUF02539.1;transl_table=11 CP098604.1 Genbank gene 17143 17574 . + . ID=gene-NDY25_00110;Name=NDY25_00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00110 CP098604.1 Protein Homology CDS 17143 17574 . + 0 ID=cds-UUF02540.1;Parent=gene-NDY25_00110;Dbxref=NCBI_GP:UUF02540.1;Name=UUF02540.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156625.1;locus_tag=NDY25_00110;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=UUF02540.1;transl_table=11 CP098604.1 Genbank gene 17586 18848 . + . ID=gene-NDY25_00115;Name=NDY25_00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00115 CP098604.1 Protein Homology CDS 17586 18848 . + 0 ID=cds-UUF02541.1;Parent=gene-NDY25_00115;Dbxref=NCBI_GP:UUF02541.1;Name=UUF02541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378776.1;locus_tag=NDY25_00115;product=TIGR03862 family flavoprotein;protein_id=UUF02541.1;transl_table=11 CP098604.1 Genbank gene 18832 20124 . - . ID=gene-NDY25_00120;Name=NDY25_00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00120 CP098604.1 Protein Homology CDS 18832 20124 . - 0 ID=cds-UUF02542.1;Parent=gene-NDY25_00120;Dbxref=NCBI_GP:UUF02542.1;Name=UUF02542.1;Ontology_term=GO:0000271,GO:0003979,GO:0016616,GO:0051287;gbkey=CDS;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503478.1;locus_tag=NDY25_00120;product=nucleotide sugar dehydrogenase;protein_id=UUF02542.1;transl_table=11 CP098604.1 Genbank gene 20268 20351 . + . ID=gene-NDY25_00125;Name=NDY25_00125;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00125 CP098604.1 tRNAscan-SE tRNA 20268 20351 . + . ID=rna-NDY25_00125;Parent=gene-NDY25_00125;anticodon=(pos:20302..20304);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00125;product=tRNA-Leu CP098604.1 tRNAscan-SE exon 20268 20351 . + . ID=exon-NDY25_00125-1;Parent=rna-NDY25_00125;anticodon=(pos:20302..20304);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00125;product=tRNA-Leu CP098604.1 Genbank gene 20461 21282 . + . ID=gene-NDY25_00130;Name=NDY25_00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00130 CP098604.1 Protein Homology CDS 20461 21282 . + 0 ID=cds-UUF02543.1;Parent=gene-NDY25_00130;Dbxref=NCBI_GP:UUF02543.1;Name=UUF02543.1;Ontology_term=GO:0000287,GO:0008897;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408977.1;locus_tag=NDY25_00130;product=4'-phosphopantetheinyl transferase superfamily protein;protein_id=UUF02543.1;transl_table=11 CP098604.1 Genbank gene 21410 21485 . - . ID=gene-NDY25_00135;Name=NDY25_00135;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00135 CP098604.1 tRNAscan-SE tRNA 21410 21485 . - . ID=rna-NDY25_00135;Parent=gene-NDY25_00135;anticodon=(pos:complement(21450..21452));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00135;product=tRNA-Gly CP098604.1 tRNAscan-SE exon 21410 21485 . - . ID=exon-NDY25_00135-1;Parent=rna-NDY25_00135;anticodon=(pos:complement(21450..21452));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00135;product=tRNA-Gly CP098604.1 Genbank gene 21612 21685 . - . ID=gene-NDY25_00140;Name=NDY25_00140;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00140 CP098604.1 tRNAscan-SE tRNA 21612 21685 . - . ID=rna-NDY25_00140;Parent=gene-NDY25_00140;anticodon=(pos:complement(21651..21653));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00140;product=tRNA-Cys CP098604.1 tRNAscan-SE exon 21612 21685 . - . ID=exon-NDY25_00140-1;Parent=rna-NDY25_00140;anticodon=(pos:complement(21651..21653));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00140;product=tRNA-Cys CP098604.1 Genbank gene 22713 31970 . + . ID=gene-NDY25_00145;Name=NDY25_00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00145 CP098604.1 Protein Homology CDS 22713 31970 . + 0 ID=cds-UUF02544.1;Parent=gene-NDY25_00145;Dbxref=NCBI_GP:UUF02544.1;Name=UUF02544.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF003417.0;locus_tag=NDY25_00145;product=amino acid adenylation domain-containing protein;protein_id=UUF02544.1;transl_table=11 CP098604.1 Genbank pseudogene 31883 48112 . + . ID=gene-NDY25_00150;Name=NDY25_00150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00150;pseudo=true CP098604.1 Protein Homology CDS 31883 48112 . + 0 ID=cds-NDY25_00150;Parent=gene-NDY25_00150;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF003417.0;locus_tag=NDY25_00150;product=amino acid adenylation domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 48258 48767 . + . ID=gene-NDY25_00155;Name=NDY25_00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00155 CP098604.1 Protein Homology CDS 48258 48767 . + 0 ID=cds-UUF04759.1;Parent=gene-NDY25_00155;Dbxref=NCBI_GP:UUF04759.1;Name=UUF04759.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013098.2;locus_tag=NDY25_00155;product=VOC family protein;protein_id=UUF04759.1;transl_table=11 CP098604.1 Genbank gene 48764 50116 . + . ID=gene-NDY25_00160;Name=NDY25_00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00160 CP098604.1 Protein Homology CDS 48764 50116 . + 0 ID=cds-UUF02545.1;Parent=gene-NDY25_00160;Dbxref=NCBI_GP:UUF02545.1;Name=UUF02545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474529.1;locus_tag=NDY25_00160;product=PLP-dependent aminotransferase family protein;protein_id=UUF02545.1;transl_table=11 CP098604.1 Genbank gene 50201 50277 . + . ID=gene-NDY25_00165;Name=NDY25_00165;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_00165 CP098604.1 cmsearch ncRNA 50201 50277 . + . ID=rna-NDY25_00165;Parent=gene-NDY25_00165;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_00165;product=sX9 sRNA CP098604.1 cmsearch exon 50201 50277 . + . ID=exon-NDY25_00165-1;Parent=rna-NDY25_00165;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_00165;product=sX9 sRNA CP098604.1 Genbank gene 50272 51417 . - . ID=gene-NDY25_00170;Name=NDY25_00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00170 CP098604.1 Protein Homology CDS 50272 51417 . - 0 ID=cds-UUF02546.1;Parent=gene-NDY25_00170;Dbxref=NCBI_GP:UUF02546.1;Name=UUF02546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003104946.1;locus_tag=NDY25_00170;product=alpha-hydroxy-acid oxidizing protein;protein_id=UUF02546.1;transl_table=11 CP098604.1 Genbank gene 51539 52081 . + . ID=gene-NDY25_00175;Name=NDY25_00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00175 CP098604.1 Protein Homology CDS 51539 52081 . + 0 ID=cds-UUF02547.1;Parent=gene-NDY25_00175;Dbxref=NCBI_GP:UUF02547.1;Name=UUF02547.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: protein motif:HMM:NF024698.2;locus_tag=NDY25_00175;product=GNAT family N-acetyltransferase;protein_id=UUF02547.1;transl_table=11 CP098604.1 Genbank gene 52148 53179 . - . ID=gene-NDY25_00180;Name=NDY25_00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00180 CP098604.1 Protein Homology CDS 52148 53179 . - 0 ID=cds-UUF02548.1;Parent=gene-NDY25_00180;Dbxref=NCBI_GP:UUF02548.1;Name=UUF02548.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024860.2;locus_tag=NDY25_00180;product=sulfotransferase;protein_id=UUF02548.1;transl_table=11 CP098604.1 Genbank gene 53774 53849 . - . ID=gene-NDY25_00185;Name=NDY25_00185;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00185 CP098604.1 tRNAscan-SE tRNA 53774 53849 . - . ID=rna-NDY25_00185;Parent=gene-NDY25_00185;anticodon=(pos:complement(53814..53816));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00185;product=tRNA-Gly CP098604.1 tRNAscan-SE exon 53774 53849 . - . ID=exon-NDY25_00185-1;Parent=rna-NDY25_00185;anticodon=(pos:complement(53814..53816));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00185;product=tRNA-Gly CP098604.1 Genbank gene 53886 54518 . - . ID=gene-NDY25_00190;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=NDY25_00190 CP098604.1 Protein Homology CDS 53886 54518 . - 0 ID=cds-UUF02549.1;Parent=gene-NDY25_00190;Dbxref=NCBI_GP:UUF02549.1;Name=UUF02549.1;Ontology_term=GO:0008654,GO:0008444;gbkey=CDS;gene=pgsA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910971.1;locus_tag=NDY25_00190;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=UUF02549.1;transl_table=11 CP098604.1 Genbank gene 54518 56374 . - . ID=gene-NDY25_00195;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=NDY25_00195 CP098604.1 Protein Homology CDS 54518 56374 . - 0 ID=cds-UUF02550.1;Parent=gene-NDY25_00195;Dbxref=NCBI_GP:UUF02550.1;Name=UUF02550.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237626.1;locus_tag=NDY25_00195;product=excinuclease ABC subunit UvrC;protein_id=UUF02550.1;transl_table=11 CP098604.1 Genbank gene 56371 57789 . - . ID=gene-NDY25_00200;Name=NDY25_00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00200 CP098604.1 Protein Homology CDS 56371 57789 . - 0 ID=cds-UUF02551.1;Parent=gene-NDY25_00200;Dbxref=NCBI_GP:UUF02551.1;Name=UUF02551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113177.1;locus_tag=NDY25_00200;product=hypothetical protein;protein_id=UUF02551.1;transl_table=11 CP098604.1 Genbank gene 57813 58277 . - . ID=gene-NDY25_00205;Name=NDY25_00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00205 CP098604.1 Protein Homology CDS 57813 58277 . - 0 ID=cds-UUF02552.1;Parent=gene-NDY25_00205;Dbxref=NCBI_GP:UUF02552.1;Name=UUF02552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452738.1;locus_tag=NDY25_00205;product=low molecular weight phosphotyrosine protein phosphatase;protein_id=UUF02552.1;transl_table=11 CP098604.1 Genbank gene 58274 59053 . - . ID=gene-NDY25_00210;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=NDY25_00210 CP098604.1 Protein Homology CDS 58274 59053 . - 0 ID=cds-UUF02553.1;Parent=gene-NDY25_00210;Dbxref=NCBI_GP:UUF02553.1;Name=UUF02553.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373332.1;locus_tag=NDY25_00210;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=UUF02553.1;transl_table=11 CP098604.1 Genbank gene 59373 60410 . - . ID=gene-NDY25_00215;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=NDY25_00215 CP098604.1 Protein Homology CDS 59373 60410 . - 0 ID=cds-UUF02554.1;Parent=gene-NDY25_00215;Dbxref=NCBI_GP:UUF02554.1;Name=UUF02554.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449592.1;locus_tag=NDY25_00215;product=tetraacyldisaccharide 4'-kinase;protein_id=UUF02554.1;transl_table=11 CP098604.1 Genbank gene 60407 62176 . - . ID=gene-NDY25_00220;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=NDY25_00220 CP098604.1 Protein Homology CDS 60407 62176 . - 0 ID=cds-UUF02555.1;Parent=gene-NDY25_00220;Dbxref=NCBI_GP:UUF02555.1;Name=UUF02555.1;Ontology_term=GO:0006869,GO:0005319;gbkey=CDS;gene=msbA;go_function=lipid transporter activity|0005319||IEA;go_process=lipid transport|0006869||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158537.1;locus_tag=NDY25_00220;product=lipid A export permease/ATP-binding protein MsbA;protein_id=UUF02555.1;transl_table=11 CP098604.1 Genbank gene 62173 62637 . - . ID=gene-NDY25_00225;Name=NDY25_00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00225 CP098604.1 Protein Homology CDS 62173 62637 . - 0 ID=cds-UUF02556.1;Parent=gene-NDY25_00225;Dbxref=NCBI_GP:UUF02556.1;Name=UUF02556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115686.1;locus_tag=NDY25_00225;product=biopolymer transporter ExbD;protein_id=UUF02556.1;transl_table=11 CP098604.1 Genbank gene 62641 63303 . - . ID=gene-NDY25_00230;Name=NDY25_00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00230 CP098604.1 Protein Homology CDS 62641 63303 . - 0 ID=cds-UUF02557.1;Parent=gene-NDY25_00230;Dbxref=NCBI_GP:UUF02557.1;Name=UUF02557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916730.1;locus_tag=NDY25_00230;product=MotA/TolQ/ExbB proton channel family protein;protein_id=UUF02557.1;transl_table=11 CP098604.1 Genbank gene 63332 65758 . - . ID=gene-NDY25_00235;Name=NDY25_00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00235 CP098604.1 Protein Homology CDS 63332 65758 . - 0 ID=cds-UUF02558.1;Parent=gene-NDY25_00235;Dbxref=NCBI_GP:UUF02558.1;Name=UUF02558.1;Ontology_term=GO:0009290,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=DNA import into cell involved in transformation|0009290||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258977.1;locus_tag=NDY25_00235;product=DNA internalization-related competence protein ComEC/Rec2;protein_id=UUF02558.1;transl_table=11 CP098604.1 Genbank gene 65926 66990 . + . ID=gene-NDY25_00240;Name=NDY25_00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00240 CP098604.1 Protein Homology CDS 65926 66990 . + 0 ID=cds-UUF02559.1;Parent=gene-NDY25_00240;Dbxref=NCBI_GP:UUF02559.1;Name=UUF02559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303656.1;locus_tag=NDY25_00240;product=SDR family oxidoreductase;protein_id=UUF02559.1;transl_table=11 CP098604.1 Genbank gene 67211 67945 . - . ID=gene-NDY25_00245;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=NDY25_00245 CP098604.1 Protein Homology CDS 67211 67945 . - 0 ID=cds-UUF02560.1;Parent=gene-NDY25_00245;Dbxref=NCBI_GP:UUF02560.1;Name=UUF02560.1;Ontology_term=GO:0042953,GO:0005524,GO:0043190;gbkey=CDS;gene=lolD;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472015.1;locus_tag=NDY25_00245;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=UUF02560.1;transl_table=11 CP098604.1 Genbank gene 67938 69179 . - . ID=gene-NDY25_00250;Name=NDY25_00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00250 CP098604.1 Protein Homology CDS 67938 69179 . - 0 ID=cds-UUF02561.1;Parent=gene-NDY25_00250;Dbxref=NCBI_GP:UUF02561.1;Name=UUF02561.1;Ontology_term=GO:0042953,GO:0005887;gbkey=CDS;go_component=integral component of plasma membrane|0005887||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902586.1;locus_tag=NDY25_00250;product=lipoprotein-releasing ABC transporter permease subunit;protein_id=UUF02561.1;transl_table=11 CP098604.1 Genbank gene 69185 69655 . - . ID=gene-NDY25_00255;Name=NDY25_00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00255 CP098604.1 Protein Homology CDS 69185 69655 . - 0 ID=cds-UUF02562.1;Parent=gene-NDY25_00255;Dbxref=NCBI_GP:UUF02562.1;Name=UUF02562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156610.1;locus_tag=NDY25_00255;product=hypothetical protein;protein_id=UUF02562.1;transl_table=11 CP098604.1 Genbank gene 69606 69854 . - . ID=gene-NDY25_00260;Name=NDY25_00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00260 CP098604.1 Protein Homology CDS 69606 69854 . - 0 ID=cds-UUF02563.1;Parent=gene-NDY25_00260;Dbxref=NCBI_GP:UUF02563.1;Name=UUF02563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802215.1;locus_tag=NDY25_00260;product=succinate dehydrogenase assembly factor 2;protein_id=UUF02563.1;transl_table=11 CP098604.1 Genbank gene 69964 70746 . - . ID=gene-NDY25_00265;Name=NDY25_00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00265 CP098604.1 Protein Homology CDS 69964 70746 . - 0 ID=cds-UUF02564.1;Parent=gene-NDY25_00265;Dbxref=NCBI_GP:UUF02564.1;Name=UUF02564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037280.1;locus_tag=NDY25_00265;product=succinate dehydrogenase iron-sulfur subunit;protein_id=UUF02564.1;transl_table=11 CP098604.1 Genbank gene 70763 70972 . - . ID=gene-NDY25_00270;Name=NDY25_00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00270 CP098604.1 Protein Homology CDS 70763 70972 . - 0 ID=cds-UUF02565.1;Parent=gene-NDY25_00270;Dbxref=NCBI_GP:UUF02565.1;Name=UUF02565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995654.1;locus_tag=NDY25_00270;product=hypothetical protein;protein_id=UUF02565.1;transl_table=11 CP098604.1 Genbank gene 70976 72766 . - . ID=gene-NDY25_00275;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=NDY25_00275 CP098604.1 Protein Homology CDS 70976 72766 . - 0 ID=cds-UUF02566.1;Parent=gene-NDY25_00275;Dbxref=NCBI_GP:UUF02566.1;Name=UUF02566.1;Ontology_term=GO:0006099,GO:0022900,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851880.1;locus_tag=NDY25_00275;product=succinate dehydrogenase flavoprotein subunit;protein_id=UUF02566.1;transl_table=11 CP098604.1 Genbank gene 72801 73187 . - . ID=gene-NDY25_00280;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=NDY25_00280 CP098604.1 Protein Homology CDS 72801 73187 . - 0 ID=cds-UUF02567.1;Parent=gene-NDY25_00280;Dbxref=NCBI_GP:UUF02567.1;Name=UUF02567.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhD;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995651.1;locus_tag=NDY25_00280;product=succinate dehydrogenase%2C hydrophobic membrane anchor protein;protein_id=UUF02567.1;transl_table=11 CP098604.1 Genbank gene 73184 73576 . - . ID=gene-NDY25_00285;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=NDY25_00285 CP098604.1 Protein Homology CDS 73184 73576 . - 0 ID=cds-UUF02568.1;Parent=gene-NDY25_00285;Dbxref=NCBI_GP:UUF02568.1;Name=UUF02568.1;Ontology_term=GO:0006099,GO:0000104,GO:0045282;gbkey=CDS;gene=sdhC;go_component=plasma membrane succinate dehydrogenase complex|0045282||IEA;go_function=succinate dehydrogenase activity|0000104||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005416132.1;locus_tag=NDY25_00285;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=UUF02568.1;transl_table=11 CP098604.1 Genbank gene 73843 74715 . + . ID=gene-NDY25_00290;Name=NDY25_00290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00290 CP098604.1 Protein Homology CDS 73843 74715 . + 0 ID=cds-UUF02569.1;Parent=gene-NDY25_00290;Dbxref=NCBI_GP:UUF02569.1;Name=UUF02569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300222.1;locus_tag=NDY25_00290;product=folate-binding protein;protein_id=UUF02569.1;transl_table=11 CP098604.1 Genbank gene 74712 75800 . - . ID=gene-NDY25_00295;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=NDY25_00295 CP098604.1 Protein Homology CDS 74712 75800 . - 0 ID=cds-UUF02570.1;Parent=gene-NDY25_00295;Dbxref=NCBI_GP:UUF02570.1;Name=UUF02570.1;Ontology_term=GO:0005524,GO:0140359;gbkey=CDS;gene=ugpC;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174187.1;locus_tag=NDY25_00295;product=sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;protein_id=UUF02570.1;transl_table=11 CP098604.1 Genbank pseudogene 76222 77652 . + . ID=gene-NDY25_00300;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=pseudogene;locus_tag=NDY25_00300;pseudo=true CP098604.1 Protein Homology CDS 76222 77652 . + 0 ID=cds-NDY25_00300;Parent=gene-NDY25_00300;Note=internal stop;Ontology_term=GO:0006098,GO:0004345;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945345.1;locus_tag=NDY25_00300;product=glucose-6-phosphate dehydrogenase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 77649 78656 . + . ID=gene-NDY25_00305;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=NDY25_00305 CP098604.1 Protein Homology CDS 77649 78656 . + 0 ID=cds-UUF02571.1;Parent=gene-NDY25_00305;Dbxref=NCBI_GP:UUF02571.1;Name=UUF02571.1;Ontology_term=GO:0005975,GO:0004340;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802227.1;locus_tag=NDY25_00305;product=glucokinase;protein_id=UUF02571.1;transl_table=11 CP098604.1 Genbank gene 78653 79372 . + . ID=gene-NDY25_00310;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;locus_tag=NDY25_00310 CP098604.1 Protein Homology CDS 78653 79372 . + 0 ID=cds-UUF02572.1;Parent=gene-NDY25_00310;Dbxref=NCBI_GP:UUF02572.1;Name=UUF02572.1;Ontology_term=GO:0006098,GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090237.1;locus_tag=NDY25_00310;product=6-phosphogluconolactonase;protein_id=UUF02572.1;transl_table=11 CP098604.1 Genbank gene 79493 81409 . + . ID=gene-NDY25_00315;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=NDY25_00315 CP098604.1 Protein Homology CDS 79493 81409 . + 0 ID=cds-UUF02573.1;Parent=gene-NDY25_00315;Dbxref=NCBI_GP:UUF02573.1;Name=UUF02573.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472018.1;locus_tag=NDY25_00315;product=phosphogluconate dehydratase;protein_id=UUF02573.1;transl_table=11 CP098604.1 Genbank gene 81461 82120 . + . ID=gene-NDY25_00320;Name=NDY25_00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00320 CP098604.1 Protein Homology CDS 81461 82120 . + 0 ID=cds-UUF02574.1;Parent=gene-NDY25_00320;Dbxref=NCBI_GP:UUF02574.1;Name=UUF02574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482798.1;locus_tag=NDY25_00320;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=UUF02574.1;transl_table=11 CP098604.1 Genbank gene 83195 86281 . - . ID=gene-NDY25_00325;Name=NDY25_00325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00325 CP098604.1 Protein Homology CDS 83195 86281 . - 0 ID=cds-UUF02575.1;Parent=gene-NDY25_00325;Dbxref=NCBI_GP:UUF02575.1;Name=UUF02575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923377.1;locus_tag=NDY25_00325;product=efflux RND transporter permease subunit;protein_id=UUF02575.1;transl_table=11 CP098604.1 Genbank gene 86278 89760 . - . ID=gene-NDY25_00330;Name=NDY25_00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00330 CP098604.1 Protein Homology CDS 86278 89760 . - 0 ID=cds-UUF02576.1;Parent=gene-NDY25_00330;Dbxref=NCBI_GP:UUF02576.1;Name=UUF02576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051310.1;locus_tag=NDY25_00330;product=efflux RND transporter permease subunit;protein_id=UUF02576.1;transl_table=11 CP098604.1 Genbank pseudogene 89838 90929 . - . ID=gene-NDY25_00335;Name=NDY25_00335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00335;pseudo=true CP098604.1 Protein Homology CDS 89838 90929 . - 0 ID=cds-NDY25_00335;Parent=gene-NDY25_00335;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090235.1;locus_tag=NDY25_00335;product=efflux RND transporter periplasmic adaptor subunit;pseudo=true;transl_table=11 CP098604.1 Genbank gene 91259 91531 . + . ID=gene-NDY25_00340;Name=NDY25_00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00340 CP098604.1 Protein Homology CDS 91259 91531 . + 0 ID=cds-UUF02577.1;Parent=gene-NDY25_00340;Dbxref=NCBI_GP:UUF02577.1;Name=UUF02577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904780.1;locus_tag=NDY25_00340;product=cytochrome c;protein_id=UUF02577.1;transl_table=11 CP098604.1 Genbank gene 91540 92001 . + . ID=gene-NDY25_00345;Name=NDY25_00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00345 CP098604.1 Protein Homology CDS 91540 92001 . + 0 ID=cds-UUF02578.1;Parent=gene-NDY25_00345;Dbxref=NCBI_GP:UUF02578.1;Name=UUF02578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576685.1;locus_tag=NDY25_00345;product=cytochrome c;protein_id=UUF02578.1;transl_table=11 CP098604.1 Genbank gene 92107 92182 . + . ID=gene-NDY25_00350;Name=NDY25_00350;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00350 CP098604.1 tRNAscan-SE tRNA 92107 92182 . + . ID=rna-NDY25_00350;Parent=gene-NDY25_00350;anticodon=(pos:92140..92142);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00350;product=tRNA-Ala CP098604.1 tRNAscan-SE exon 92107 92182 . + . ID=exon-NDY25_00350-1;Parent=rna-NDY25_00350;anticodon=(pos:92140..92142);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00350;product=tRNA-Ala CP098604.1 Genbank gene 92229 92304 . + . ID=gene-NDY25_00355;Name=NDY25_00355;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00355 CP098604.1 tRNAscan-SE tRNA 92229 92304 . + . ID=rna-NDY25_00355;Parent=gene-NDY25_00355;anticodon=(pos:92263..92265);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00355;product=tRNA-Glu CP098604.1 tRNAscan-SE exon 92229 92304 . + . ID=exon-NDY25_00355-1;Parent=rna-NDY25_00355;anticodon=(pos:92263..92265);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00355;product=tRNA-Glu CP098604.1 Genbank gene 92485 92560 . + . ID=gene-NDY25_00360;Name=NDY25_00360;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00360 CP098604.1 tRNAscan-SE tRNA 92485 92560 . + . ID=rna-NDY25_00360;Parent=gene-NDY25_00360;anticodon=(pos:92518..92520);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00360;product=tRNA-Ala CP098604.1 tRNAscan-SE exon 92485 92560 . + . ID=exon-NDY25_00360-1;Parent=rna-NDY25_00360;anticodon=(pos:92518..92520);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00360;product=tRNA-Ala CP098604.1 Genbank gene 92609 92684 . + . ID=gene-NDY25_00365;Name=NDY25_00365;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00365 CP098604.1 tRNAscan-SE tRNA 92609 92684 . + . ID=rna-NDY25_00365;Parent=gene-NDY25_00365;anticodon=(pos:92643..92645);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00365;product=tRNA-Glu CP098604.1 tRNAscan-SE exon 92609 92684 . + . ID=exon-NDY25_00365-1;Parent=rna-NDY25_00365;anticodon=(pos:92643..92645);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00365;product=tRNA-Glu CP098604.1 Genbank gene 92764 92940 . - . ID=gene-NDY25_00370;Name=NDY25_00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00370 CP098604.1 Protein Homology CDS 92764 92940 . - 0 ID=cds-UUF02579.1;Parent=gene-NDY25_00370;Dbxref=NCBI_GP:UUF02579.1;Name=UUF02579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482805.1;locus_tag=NDY25_00370;product=hypothetical protein;protein_id=UUF02579.1;transl_table=11 CP098604.1 Genbank gene 93301 93387 . - . ID=gene-NDY25_00375;Name=NDY25_00375;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00375 CP098604.1 tRNAscan-SE tRNA 93301 93387 . - . ID=rna-NDY25_00375;Parent=gene-NDY25_00375;anticodon=(pos:complement(93351..93353));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00375;product=tRNA-Leu CP098604.1 tRNAscan-SE exon 93301 93387 . - . ID=exon-NDY25_00375-1;Parent=rna-NDY25_00375;anticodon=(pos:complement(93351..93353));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00375;product=tRNA-Leu CP098604.1 Genbank gene 93527 93907 . + . ID=gene-NDY25_00380;Name=NDY25_00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00380 CP098604.1 Protein Homology CDS 93527 93907 . + 0 ID=cds-UUF02580.1;Parent=gene-NDY25_00380;Dbxref=NCBI_GP:UUF02580.1;Name=UUF02580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995422.1;locus_tag=NDY25_00380;product=response regulator;protein_id=UUF02580.1;transl_table=11 CP098604.1 Genbank gene 94109 97894 . + . ID=gene-NDY25_00385;Name=NDY25_00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00385 CP098604.1 Protein Homology CDS 94109 97894 . + 0 ID=cds-UUF02581.1;Parent=gene-NDY25_00385;Dbxref=NCBI_GP:UUF02581.1;Name=UUF02581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802259.1;locus_tag=NDY25_00385;product=PAS domain S-box protein;protein_id=UUF02581.1;transl_table=11 CP098604.1 Genbank gene 98501 100867 . - . ID=gene-NDY25_00390;Name=NDY25_00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00390 CP098604.1 Protein Homology CDS 98501 100867 . - 0 ID=cds-UUF02582.1;Parent=gene-NDY25_00390;Dbxref=NCBI_GP:UUF02582.1;Name=UUF02582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090230.1;locus_tag=NDY25_00390;product=RNA-binding transcriptional accessory protein;protein_id=UUF02582.1;transl_table=11 CP098604.1 Genbank gene 100970 101197 . - . ID=gene-NDY25_00395;Name=NDY25_00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00395 CP098604.1 Protein Homology CDS 100970 101197 . - 0 ID=cds-UUF02583.1;Parent=gene-NDY25_00395;Dbxref=NCBI_GP:UUF02583.1;Name=UUF02583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157548.1;locus_tag=NDY25_00395;product=hypothetical protein;protein_id=UUF02583.1;transl_table=11 CP098604.1 Genbank gene 101391 102602 . + . ID=gene-NDY25_00400;Name=NDY25_00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00400 CP098604.1 Protein Homology CDS 101391 102602 . + 0 ID=cds-UUF02584.1;Parent=gene-NDY25_00400;Dbxref=NCBI_GP:UUF02584.1;Name=UUF02584.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347427.1;locus_tag=NDY25_00400;product=FAD-binding oxidoreductase;protein_id=UUF02584.1;transl_table=11 CP098604.1 Genbank gene 102560 103048 . - . ID=gene-NDY25_00405;Name=NDY25_00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00405 CP098604.1 Protein Homology CDS 102560 103048 . - 0 ID=cds-UUF02585.1;Parent=gene-NDY25_00405;Dbxref=NCBI_GP:UUF02585.1;Name=UUF02585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373243.1;locus_tag=NDY25_00405;product=hypothetical protein;protein_id=UUF02585.1;transl_table=11 CP098604.1 Genbank gene 103045 103245 . - . ID=gene-NDY25_00410;Name=NDY25_00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00410 CP098604.1 Protein Homology CDS 103045 103245 . - 0 ID=cds-UUF02586.1;Parent=gene-NDY25_00410;Dbxref=NCBI_GP:UUF02586.1;Name=UUF02586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482814.1;locus_tag=NDY25_00410;product=PspC domain-containing protein;protein_id=UUF02586.1;transl_table=11 CP098604.1 Genbank gene 103360 104436 . - . ID=gene-NDY25_00415;Name=NDY25_00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00415 CP098604.1 Protein Homology CDS 103360 104436 . - 0 ID=cds-UUF02587.1;Parent=gene-NDY25_00415;Dbxref=NCBI_GP:UUF02587.1;Name=UUF02587.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301741.1;locus_tag=NDY25_00415;product=class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC;protein_id=UUF02587.1;transl_table=11 CP098604.1 Genbank gene 104433 105602 . - . ID=gene-NDY25_00420;Name=phaE;gbkey=Gene;gene=phaE;gene_biotype=protein_coding;locus_tag=NDY25_00420 CP098604.1 Protein Homology CDS 104433 105602 . - 0 ID=cds-UUF02588.1;Parent=gene-NDY25_00420;Dbxref=NCBI_GP:UUF02588.1;Name=UUF02588.1;gbkey=CDS;gene=phaE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373234.1;locus_tag=NDY25_00420;product=class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE;protein_id=UUF02588.1;transl_table=11 CP098604.1 Genbank gene 105658 106272 . - . ID=gene-NDY25_00425;Name=NDY25_00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00425 CP098604.1 Protein Homology CDS 105658 106272 . - 0 ID=cds-UUF02589.1;Parent=gene-NDY25_00425;Dbxref=NCBI_GP:UUF02589.1;Name=UUF02589.1;Ontology_term=GO:0008654,GO:0016780,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904412.1;locus_tag=NDY25_00425;product=CDP-alcohol phosphatidyltransferase family protein;protein_id=UUF02589.1;transl_table=11 CP098604.1 Genbank pseudogene 106406 107168 . + . ID=gene-NDY25_00430;Name=NDY25_00430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00430;pseudo=true CP098604.1 Protein Homology CDS 106406 107168 . + 0 ID=cds-NDY25_00430;Parent=gene-NDY25_00430;Note=frameshifted;Ontology_term=GO:0003858;gbkey=CDS;go_function=3-hydroxybutyrate dehydrogenase activity|0003858||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157555.1;locus_tag=NDY25_00430;product=3-hydroxybutyrate dehydrogenase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 107361 107849 . - . ID=gene-NDY25_00435;Name=NDY25_00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00435 CP098604.1 Protein Homology CDS 107361 107849 . - 0 ID=cds-UUF02590.1;Parent=gene-NDY25_00435;Dbxref=NCBI_GP:UUF02590.1;Name=UUF02590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444982.1;locus_tag=NDY25_00435;product=8-oxo-dGTP diphosphatase;protein_id=UUF02590.1;transl_table=11 CP098604.1 Genbank gene 107948 108451 . - . ID=gene-NDY25_00440;Name=NDY25_00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00440 CP098604.1 Protein Homology CDS 107948 108451 . - 0 ID=cds-UUF02591.1;Parent=gene-NDY25_00440;Dbxref=NCBI_GP:UUF02591.1;Name=UUF02591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301746.1;locus_tag=NDY25_00440;product=DUF1249 domain-containing protein;protein_id=UUF02591.1;transl_table=11 CP098604.1 Genbank gene 108656 109477 . - . ID=gene-NDY25_00445;Name=NDY25_00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00445 CP098604.1 Protein Homology CDS 108656 109477 . - 0 ID=cds-UUF02592.1;Parent=gene-NDY25_00445;Dbxref=NCBI_GP:UUF02592.1;Name=UUF02592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037311.1;locus_tag=NDY25_00445;product=kinase/pyrophosphorylase;protein_id=UUF02592.1;transl_table=11 CP098604.1 Genbank pseudogene 109620 112002 . + . ID=gene-NDY25_00450;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=pseudogene;locus_tag=NDY25_00450;pseudo=true CP098604.1 Protein Homology CDS 109620 112002 . + 0 ID=cds-NDY25_00450;Parent=gene-NDY25_00450;Note=frameshifted;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118687.1;locus_tag=NDY25_00450;product=phosphoenolpyruvate synthase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 112002 112973 . + . ID=gene-NDY25_00455;Name=NDY25_00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00455 CP098604.1 Protein Homology CDS 112002 112973 . + 0 ID=cds-UUF02593.1;Parent=gene-NDY25_00455;Dbxref=NCBI_GP:UUF02593.1;Name=UUF02593.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157560.1;locus_tag=NDY25_00455;product=mechanosensitive ion channel;protein_id=UUF02593.1;transl_table=11 CP098604.1 Genbank gene 113166 113750 . - . ID=gene-NDY25_00460;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=NDY25_00460 CP098604.1 Protein Homology CDS 113166 113750 . - 0 ID=cds-UUF02594.1;Parent=gene-NDY25_00460;Dbxref=NCBI_GP:UUF02594.1;Name=UUF02594.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995404.1;locus_tag=NDY25_00460;product=oligoribonuclease;protein_id=UUF02594.1;transl_table=11 CP098604.1 Genbank gene 113821 114318 . - . ID=gene-NDY25_00465;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=NDY25_00465 CP098604.1 Protein Homology CDS 113821 114318 . - 0 ID=cds-UUF04476.1;Parent=gene-NDY25_00465;Dbxref=NCBI_GP:UUF04476.1;Name=UUF04476.1;Ontology_term=GO:0002100,GO:0008251;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450916.1;locus_tag=NDY25_00465;product=tRNA adenosine(34) deaminase TadA;protein_id=UUF04476.1;transl_table=11 CP098604.1 Genbank gene 114333 114800 . - . ID=gene-NDY25_00470;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=NDY25_00470 CP098604.1 Protein Homology CDS 114333 114800 . - 0 ID=cds-UUF04477.1;Parent=gene-NDY25_00470;Dbxref=NCBI_GP:UUF04477.1;Name=UUF04477.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802282.1;locus_tag=NDY25_00470;product=manganese-binding transcriptional regulator MntR;protein_id=UUF04477.1;transl_table=11 CP098604.1 Genbank gene 114946 116292 . + . ID=gene-NDY25_00475;Name=NDY25_00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00475 CP098604.1 Protein Homology CDS 114946 116292 . + 0 ID=cds-UUF02595.1;Parent=gene-NDY25_00475;Dbxref=NCBI_GP:UUF02595.1;Name=UUF02595.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802284.1;locus_tag=NDY25_00475;product=Nramp family divalent metal transporter;protein_id=UUF02595.1;transl_table=11 CP098604.1 Genbank gene 116810 117634 . + . ID=gene-NDY25_00480;Name=NDY25_00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00480 CP098604.1 Protein Homology CDS 116810 117634 . + 0 ID=cds-UUF04478.1;Parent=gene-NDY25_00480;Dbxref=NCBI_GP:UUF04478.1;Name=UUF04478.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347416.1;locus_tag=NDY25_00480;product=alpha/beta hydrolase;protein_id=UUF04478.1;transl_table=11 CP098604.1 Genbank gene 117715 117790 . - . ID=gene-NDY25_00485;Name=NDY25_00485;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_00485 CP098604.1 cmsearch ncRNA 117715 117790 . - . ID=rna-NDY25_00485;Parent=gene-NDY25_00485;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_00485;product=sX9 sRNA CP098604.1 cmsearch exon 117715 117790 . - . ID=exon-NDY25_00485-1;Parent=rna-NDY25_00485;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_00485;product=sX9 sRNA CP098604.1 Genbank pseudogene 117881 118107 . - . ID=gene-NDY25_00490;Name=NDY25_00490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00490;pseudo=true CP098604.1 Protein Homology CDS 117881 118107 . - 0 ID=cds-NDY25_00490;Parent=gene-NDY25_00490;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158234.1;locus_tag=NDY25_00490;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 118338 118496 . - . ID=gene-NDY25_00495;Name=NDY25_00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00495 CP098604.1 Protein Homology CDS 118338 118496 . - 0 ID=cds-UUF02596.1;Parent=gene-NDY25_00495;Dbxref=NCBI_GP:UUF02596.1;Name=UUF02596.1;Ontology_term=GO:0008150,GO:0003674,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577142.1;locus_tag=NDY25_00495;product=XapX domain-containing protein;protein_id=UUF02596.1;transl_table=11 CP098604.1 Genbank gene 118493 118723 . - . ID=gene-NDY25_00500;Name=NDY25_00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00500 CP098604.1 Protein Homology CDS 118493 118723 . - 0 ID=cds-UUF04479.1;Parent=gene-NDY25_00500;Dbxref=NCBI_GP:UUF04479.1;Name=UUF04479.1;Ontology_term=GO:0008150,GO:0003674,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922653.1;locus_tag=NDY25_00500;product=XapX domain-containing protein;protein_id=UUF04479.1;transl_table=11 CP098604.1 Genbank gene 118729 120357 . - . ID=gene-NDY25_00505;Name=NDY25_00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00505 CP098604.1 Protein Homology CDS 118729 120357 . - 0 ID=cds-UUF02597.1;Parent=gene-NDY25_00505;Dbxref=NCBI_GP:UUF02597.1;Name=UUF02597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963472.1;locus_tag=NDY25_00505;product=MFS transporter;protein_id=UUF02597.1;transl_table=11 CP098604.1 Genbank gene 120440 122281 . - . ID=gene-NDY25_00510;Name=NDY25_00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00510 CP098604.1 Protein Homology CDS 120440 122281 . - 0 ID=cds-UUF04480.1;Parent=gene-NDY25_00510;Dbxref=NCBI_GP:UUF04480.1;Name=UUF04480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090280.1;locus_tag=NDY25_00510;product=amidohydrolase;protein_id=UUF04480.1;transl_table=11 CP098604.1 Genbank gene 122407 122844 . - . ID=gene-NDY25_00515;Name=NDY25_00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00515 CP098604.1 Protein Homology CDS 122407 122844 . - 0 ID=cds-UUF02598.1;Parent=gene-NDY25_00515;Dbxref=NCBI_GP:UUF02598.1;Name=UUF02598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161653.1;locus_tag=NDY25_00515;product=DoxX family protein;protein_id=UUF02598.1;transl_table=11 CP098604.1 Genbank gene 122841 123497 . - . ID=gene-NDY25_00520;Name=NDY25_00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00520 CP098604.1 Protein Homology CDS 122841 123497 . - 0 ID=cds-UUF02599.1;Parent=gene-NDY25_00520;Dbxref=NCBI_GP:UUF02599.1;Name=UUF02599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157571.1;locus_tag=NDY25_00520;product=hydrolase;protein_id=UUF02599.1;transl_table=11 CP098604.1 Genbank gene 123494 123874 . - . ID=gene-NDY25_00525;Name=NDY25_00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00525 CP098604.1 Protein Homology CDS 123494 123874 . - 0 ID=cds-UUF04481.1;Parent=gene-NDY25_00525;Dbxref=NCBI_GP:UUF04481.1;Name=UUF04481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373197.1;locus_tag=NDY25_00525;product=helix-turn-helix transcriptional regulator;protein_id=UUF04481.1;transl_table=11 CP098604.1 Genbank pseudogene 124311 127404 . + . ID=gene-NDY25_00530;Name=NDY25_00530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00530;pseudo=true CP098604.1 Protein Homology CDS 124311 127404 . + 0 ID=cds-NDY25_00530;Parent=gene-NDY25_00530;Note=frameshifted;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963462.1;locus_tag=NDY25_00530;product=histidine kinase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 127397 128038 . + . ID=gene-NDY25_00535;Name=NDY25_00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00535 CP098604.1 Protein Homology CDS 127397 128038 . + 0 ID=cds-UUF02600.1;Parent=gene-NDY25_00535;Dbxref=NCBI_GP:UUF02600.1;Name=UUF02600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922658.1;locus_tag=NDY25_00535;product=response regulator transcription factor;protein_id=UUF02600.1;transl_table=11 CP098604.1 Genbank gene 128244 129371 . + . ID=gene-NDY25_00540;Name=NDY25_00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00540 CP098604.1 Protein Homology CDS 128244 129371 . + 0 ID=cds-UUF02601.1;Parent=gene-NDY25_00540;Dbxref=NCBI_GP:UUF02601.1;Name=UUF02601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347407.1;locus_tag=NDY25_00540;product=Cache 3/Cache 2 fusion domain-containing protein;protein_id=UUF02601.1;transl_table=11 CP098604.1 Genbank gene 129416 130042 . + . ID=gene-NDY25_00545;Name=NDY25_00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00545 CP098604.1 Protein Homology CDS 129416 130042 . + 0 ID=cds-UUF02602.1;Parent=gene-NDY25_00545;Dbxref=NCBI_GP:UUF02602.1;Name=UUF02602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157575.1;locus_tag=NDY25_00545;product=hypothetical protein;protein_id=UUF02602.1;transl_table=11 CP098604.1 Genbank gene 130131 131207 . - . ID=gene-NDY25_00550;Name=NDY25_00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00550 CP098604.1 Protein Homology CDS 130131 131207 . - 0 ID=cds-UUF02603.1;Parent=gene-NDY25_00550;Dbxref=NCBI_GP:UUF02603.1;Name=UUF02603.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015431.2;locus_tag=NDY25_00550;product=LysR family transcriptional regulator;protein_id=UUF02603.1;transl_table=11 CP098604.1 Genbank gene 131201 131362 . + . ID=gene-NDY25_00555;Name=NDY25_00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00555 CP098604.1 GeneMarkS-2+ CDS 131201 131362 . + 0 ID=cds-UUF02604.1;Parent=gene-NDY25_00555;Dbxref=NCBI_GP:UUF02604.1;Name=UUF02604.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_00555;product=hypothetical protein;protein_id=UUF02604.1;transl_table=11 CP098604.1 Genbank gene 131405 132211 . + . ID=gene-NDY25_00560;Name=NDY25_00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00560 CP098604.1 Protein Homology CDS 131405 132211 . + 0 ID=cds-UUF02605.1;Parent=gene-NDY25_00560;Dbxref=NCBI_GP:UUF02605.1;Name=UUF02605.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801519.1;locus_tag=NDY25_00560;product=IS5 family transposase;protein_id=UUF02605.1;transl_table=11 CP098604.1 Genbank gene 132263 133407 . + . ID=gene-NDY25_00565;Name=NDY25_00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00565 CP098604.1 Protein Homology CDS 132263 132500 . + 0 ID=cds-UUF02606.1;Parent=gene-NDY25_00565;Dbxref=NCBI_GP:UUF02606.1;Name=UUF02606.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_00565;product=IS3 family transposase;protein_id=UUF02606.1;transl_table=11 CP098604.1 Protein Homology CDS 132500 133407 . + 2 ID=cds-UUF02606.1;Parent=gene-NDY25_00565;Dbxref=NCBI_GP:UUF02606.1;Name=UUF02606.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_00565;product=IS3 family transposase;protein_id=UUF02606.1;transl_table=11 CP098604.1 Genbank pseudogene 133434 134231 . - . ID=gene-NDY25_00570;Name=NDY25_00570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00570;pseudo=true CP098604.1 Protein Homology CDS 133434 134231 . - 0 ID=cds-NDY25_00570;Parent=gene-NDY25_00570;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172067.1;locus_tag=NDY25_00570;product=integrase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 134315 134404 . - . ID=gene-NDY25_00575;Name=NDY25_00575;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00575 CP098604.1 tRNAscan-SE tRNA 134315 134404 . - . ID=rna-NDY25_00575;Parent=gene-NDY25_00575;anticodon=(pos:complement(134368..134370));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00575;product=tRNA-Ser CP098604.1 tRNAscan-SE exon 134315 134404 . - . ID=exon-NDY25_00575-1;Parent=rna-NDY25_00575;anticodon=(pos:complement(134368..134370));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00575;product=tRNA-Ser CP098604.1 Genbank gene 134766 135782 . - . ID=gene-NDY25_00580;Name=NDY25_00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00580 CP098604.1 Protein Homology CDS 134766 135782 . - 0 ID=cds-UUF02607.1;Parent=gene-NDY25_00580;Dbxref=NCBI_GP:UUF02607.1;Name=UUF02607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964080.1;locus_tag=NDY25_00580;product=LysR family transcriptional regulator;protein_id=UUF02607.1;transl_table=11 CP098604.1 Genbank gene 136270 137619 . - . ID=gene-NDY25_00585;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=NDY25_00585 CP098604.1 Protein Homology CDS 136270 137619 . - 0 ID=cds-UUF02608.1;Parent=gene-NDY25_00585;Dbxref=NCBI_GP:UUF02608.1;Name=UUF02608.1;Ontology_term=GO:0006434,GO:0004828,GO:0005737;gbkey=CDS;gene=serS;go_component=cytoplasm|0005737||IEA;go_function=serine-tRNA ligase activity|0004828||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991172.1;locus_tag=NDY25_00585;product=serine--tRNA ligase;protein_id=UUF02608.1;transl_table=11 CP098604.1 Genbank gene 137733 138398 . + . ID=gene-NDY25_00590;Name=NDY25_00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00590 CP098604.1 Protein Homology CDS 137733 138398 . + 0 ID=cds-UUF02609.1;Parent=gene-NDY25_00590;Dbxref=NCBI_GP:UUF02609.1;Name=UUF02609.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089877.1;locus_tag=NDY25_00590;product=energy transducer TonB;protein_id=UUF02609.1;transl_table=11 CP098604.1 Genbank gene 138760 139227 . + . ID=gene-NDY25_00595;Name=NDY25_00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00595 CP098604.1 Protein Homology CDS 138760 139227 . + 0 ID=cds-UUF04482.1;Parent=gene-NDY25_00595;Dbxref=NCBI_GP:UUF04482.1;Name=UUF04482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158182.1;locus_tag=NDY25_00595;product=energy transducer TonB;protein_id=UUF04482.1;transl_table=11 CP098604.1 Genbank gene 139211 140527 . - . ID=gene-NDY25_00600;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=NDY25_00600 CP098604.1 Protein Homology CDS 139211 140527 . - 0 ID=cds-UUF02610.1;Parent=gene-NDY25_00600;Dbxref=NCBI_GP:UUF02610.1;Name=UUF02610.1;Ontology_term=GO:0009423,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451089.1;locus_tag=NDY25_00600;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=UUF02610.1;transl_table=11 CP098604.1 Genbank gene 140650 141849 . - . ID=gene-NDY25_00605;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=NDY25_00605 CP098604.1 Protein Homology CDS 140650 141849 . - 0 ID=cds-UUF02611.1;Parent=gene-NDY25_00605;Dbxref=NCBI_GP:UUF02611.1;Name=UUF02611.1;Ontology_term=GO:0009094,GO:0004664;gbkey=CDS;gene=pheA;go_function=prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300926.1;locus_tag=NDY25_00605;product=prephenate dehydratase;protein_id=UUF02611.1;transl_table=11 CP098604.1 Genbank gene 141916 143001 . - . ID=gene-NDY25_00610;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=NDY25_00610 CP098604.1 Protein Homology CDS 141916 143001 . - 0 ID=cds-UUF02612.1;Parent=gene-NDY25_00610;Dbxref=NCBI_GP:UUF02612.1;Name=UUF02612.1;Ontology_term=GO:0006564,GO:0003824,GO:0004648;gbkey=CDS;gene=serC;go_function=catalytic activity|0003824||IEA,O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300927.1;locus_tag=NDY25_00610;product=3-phosphoserine/phosphohydroxythreonine transaminase;protein_id=UUF02612.1;transl_table=11 CP098604.1 Genbank gene 143181 144149 . + . ID=gene-NDY25_00615;Name=msrP;gbkey=Gene;gene=msrP;gene_biotype=protein_coding;locus_tag=NDY25_00615 CP098604.1 Protein Homology CDS 143181 144149 . + 0 ID=cds-UUF02613.1;Parent=gene-NDY25_00615;Dbxref=NCBI_GP:UUF02613.1;Name=UUF02613.1;Ontology_term=GO:0030091,GO:0016667,GO:0043546;gbkey=CDS;gene=msrP;go_function=oxidoreductase activity%2C acting on a sulfur group of donors|0016667||IEA,molybdopterin cofactor binding|0043546||IEA;go_process=protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914864.1;locus_tag=NDY25_00615;product=protein-methionine-sulfoxide reductase catalytic subunit MsrP;protein_id=UUF02613.1;transl_table=11 CP098604.1 Genbank gene 144291 144947 . + . ID=gene-NDY25_00620;Name=msrQ;gbkey=Gene;gene=msrQ;gene_biotype=protein_coding;locus_tag=NDY25_00620 CP098604.1 Protein Homology CDS 144291 144947 . + 0 ID=cds-UUF02614.1;Parent=gene-NDY25_00620;Dbxref=NCBI_GP:UUF02614.1;Name=UUF02614.1;gbkey=CDS;gene=msrQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036769.1;locus_tag=NDY25_00620;product=protein-methionine-sulfoxide reductase heme-binding subunit MsrQ;protein_id=UUF02614.1;transl_table=11 CP098604.1 Genbank gene 144889 145698 . - . ID=gene-NDY25_00625;Name=NDY25_00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00625 CP098604.1 Protein Homology CDS 144889 145698 . - 0 ID=cds-UUF02615.1;Parent=gene-NDY25_00625;Dbxref=NCBI_GP:UUF02615.1;Name=UUF02615.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904651.1;locus_tag=NDY25_00625;product=FHA domain-containing protein;protein_id=UUF02615.1;transl_table=11 CP098604.1 Genbank gene 145870 146145 . + . ID=gene-NDY25_00630;Name=NDY25_00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00630 CP098604.1 Protein Homology CDS 145870 146145 . + 0 ID=cds-UUF02616.1;Parent=gene-NDY25_00630;Dbxref=NCBI_GP:UUF02616.1;Name=UUF02616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503751.1;locus_tag=NDY25_00630;product=polyhydroxyalkanoic acid system family protein;protein_id=UUF02616.1;transl_table=11 CP098604.1 Genbank gene 146397 146957 . + . ID=gene-NDY25_00635;Name=NDY25_00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00635 CP098604.1 Protein Homology CDS 146397 146957 . + 0 ID=cds-UUF02617.1;Parent=gene-NDY25_00635;Dbxref=NCBI_GP:UUF02617.1;Name=UUF02617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158174.1;locus_tag=NDY25_00635;product=phasin family protein;protein_id=UUF02617.1;transl_table=11 CP098604.1 Genbank pseudogene 147193 148198 . + . ID=gene-NDY25_00640;Name=NDY25_00640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00640;pseudo=true CP098604.1 Protein Homology CDS 147193 148198 . + 0 ID=cds-NDY25_00640;Parent=gene-NDY25_00640;Note=frameshifted;Ontology_term=GO:0009307,GO:0003677,GO:0004519;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347042.1;locus_tag=NDY25_00640;product=restriction endonuclease;pseudo=true;transl_table=11 CP098604.1 Genbank gene 148235 148972 . - . ID=gene-NDY25_00645;Name=hutC;gbkey=Gene;gene=hutC;gene_biotype=protein_coding;locus_tag=NDY25_00645 CP098604.1 Protein Homology CDS 148235 148972 . - 0 ID=cds-UUF02618.1;Parent=gene-NDY25_00645;Dbxref=NCBI_GP:UUF02618.1;Name=UUF02618.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=hutC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451099.1;locus_tag=NDY25_00645;product=histidine utilization repressor;protein_id=UUF02618.1;transl_table=11 CP098604.1 Genbank gene 149013 150383 . - . ID=gene-NDY25_00650;Name=NDY25_00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00650 CP098604.1 Protein Homology CDS 149013 150383 . - 0 ID=cds-UUF02619.1;Parent=gene-NDY25_00650;Dbxref=NCBI_GP:UUF02619.1;Name=UUF02619.1;Ontology_term=GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451100.1;locus_tag=NDY25_00650;product=formimidoylglutamate deiminase;protein_id=UUF02619.1;transl_table=11 CP098604.1 Genbank gene 150444 151649 . + . ID=gene-NDY25_00655;Name=hutI;gbkey=Gene;gene=hutI;gene_biotype=protein_coding;locus_tag=NDY25_00655 CP098604.1 Protein Homology CDS 150444 151649 . + 0 ID=cds-UUF02620.1;Parent=gene-NDY25_00655;Dbxref=NCBI_GP:UUF02620.1;Name=UUF02620.1;Ontology_term=GO:0006548,GO:0050480;gbkey=CDS;gene=hutI;go_function=imidazolonepropionase activity|0050480||IEA;go_process=histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158169.1;locus_tag=NDY25_00655;product=imidazolonepropionase;protein_id=UUF02620.1;transl_table=11 CP098604.1 Genbank gene 151618 153201 . + . ID=gene-NDY25_00660;Name=hutH;gbkey=Gene;gene=hutH;gene_biotype=protein_coding;locus_tag=NDY25_00660 CP098604.1 Protein Homology CDS 151618 153201 . + 0 ID=cds-UUF02621.1;Parent=gene-NDY25_00660;Dbxref=NCBI_GP:UUF02621.1;Name=UUF02621.1;Ontology_term=GO:0006548,GO:0004397;gbkey=CDS;gene=hutH;go_function=histidine ammonia-lyase activity|0004397||IEA;go_process=histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451102.1;locus_tag=NDY25_00660;product=histidine ammonia-lyase;protein_id=UUF02621.1;transl_table=11 CP098604.1 Genbank gene 153275 154135 . + . ID=gene-NDY25_00665;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=NDY25_00665 CP098604.1 Protein Homology CDS 153275 154135 . + 0 ID=cds-UUF02622.1;Parent=gene-NDY25_00665;Dbxref=NCBI_GP:UUF02622.1;Name=UUF02622.1;Ontology_term=GO:0019557,GO:0050129;gbkey=CDS;gene=hutG;go_function=N-formylglutamate deformylase activity|0050129||IEA;go_process=histidine catabolic process to glutamate and formate|0019557||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485831.1;locus_tag=NDY25_00665;product=N-formylglutamate deformylase;protein_id=UUF02622.1;transl_table=11 CP098604.1 Genbank gene 154152 155819 . + . ID=gene-NDY25_00670;Name=NDY25_00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00670 CP098604.1 Protein Homology CDS 154152 155819 . + 0 ID=cds-UUF02623.1;Parent=gene-NDY25_00670;Dbxref=NCBI_GP:UUF02623.1;Name=UUF02623.1;Ontology_term=GO:0016153;gbkey=CDS;go_function=urocanate hydratase activity|0016153||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165198.1;locus_tag=NDY25_00670;product=urocanate hydratase;protein_id=UUF02623.1;transl_table=11 CP098604.1 Genbank gene 156520 157664 . + . ID=gene-NDY25_00675;Name=NDY25_00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00675 CP098604.1 Protein Homology CDS 156520 156757 . + 0 ID=cds-UUF02624.1;Parent=gene-NDY25_00675;Dbxref=NCBI_GP:UUF02624.1;Name=UUF02624.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_00675;product=IS3 family transposase;protein_id=UUF02624.1;transl_table=11 CP098604.1 Protein Homology CDS 156757 157664 . + 2 ID=cds-UUF02624.1;Parent=gene-NDY25_00675;Dbxref=NCBI_GP:UUF02624.1;Name=UUF02624.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_00675;product=IS3 family transposase;protein_id=UUF02624.1;transl_table=11 CP098604.1 Genbank gene 157718 158680 . - . ID=gene-NDY25_00680;Name=NDY25_00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00680 CP098604.1 Protein Homology CDS 157718 158680 . - 0 ID=cds-UUF02625.1;Parent=gene-NDY25_00680;Dbxref=NCBI_GP:UUF02625.1;Name=UUF02625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510746.1;locus_tag=NDY25_00680;product=hypothetical protein;protein_id=UUF02625.1;transl_table=11 CP098604.1 Genbank gene 159020 159745 . + . ID=gene-NDY25_00685;Name=NDY25_00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00685 CP098604.1 Protein Homology CDS 159020 159745 . + 0 ID=cds-UUF02626.1;Parent=gene-NDY25_00685;Dbxref=NCBI_GP:UUF02626.1;Name=UUF02626.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451499.1;locus_tag=NDY25_00685;product=hypothetical protein;protein_id=UUF02626.1;transl_table=11 CP098604.1 Genbank pseudogene 160004 162479 . - . ID=gene-NDY25_00690;Name=NDY25_00690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00690;pseudo=true CP098604.1 Protein Homology CDS 160004 162479 . - 0 ID=cds-NDY25_00690;Parent=gene-NDY25_00690;Note=frameshifted;Ontology_term=GO:0016491,GO:0048038,GO:0016021,GO:0030288;gbkey=CDS;go_component=integral component of membrane|0016021||IEA,outer membrane-bounded periplasmic space|0030288||IEA;go_function=oxidoreductase activity|0016491||IEA,quinone binding|0048038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113395.1;locus_tag=NDY25_00690;product=membrane-bound PQQ-dependent dehydrogenase%2C glucose/quinate/shikimate family;pseudo=true;transl_table=11 CP098604.1 Genbank gene 162677 165388 . - . ID=gene-NDY25_00695;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=NDY25_00695 CP098604.1 Protein Homology CDS 162677 165388 . - 0 ID=cds-UUF02627.1;Parent=gene-NDY25_00695;Dbxref=NCBI_GP:UUF02627.1;Name=UUF02627.1;Ontology_term=GO:0006259,GO:0006265,GO:0003677,GO:0003916,GO:0003918,GO:0005524;gbkey=CDS;gene=gyrA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA metabolic process|0006259||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158164.1;locus_tag=NDY25_00695;product=DNA gyrase subunit A;protein_id=UUF02627.1;transl_table=11 CP098604.1 Genbank gene 165599 166663 . - . ID=gene-NDY25_00700;Name=mtnA;gbkey=Gene;gene=mtnA;gene_biotype=protein_coding;locus_tag=NDY25_00700 CP098604.1 Protein Homology CDS 165599 166663 . - 0 ID=cds-UUF02628.1;Parent=gene-NDY25_00700;Dbxref=NCBI_GP:UUF02628.1;Name=UUF02628.1;Ontology_term=GO:0019509,GO:0046523;gbkey=CDS;gene=mtnA;go_function=S-methyl-5-thioribose-1-phosphate isomerase activity|0046523||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051043.1;locus_tag=NDY25_00700;product=S-methyl-5-thioribose-1-phosphate isomerase;protein_id=UUF02628.1;transl_table=11 CP098604.1 Genbank gene 167562 168248 . - . ID=gene-NDY25_00705;Name=NDY25_00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00705 CP098604.1 Protein Homology CDS 167562 168248 . - 0 ID=cds-UUF02629.1;Parent=gene-NDY25_00705;Dbxref=NCBI_GP:UUF02629.1;Name=UUF02629.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089862.1;locus_tag=NDY25_00705;product=DUF3011 domain-containing protein;protein_id=UUF02629.1;transl_table=11 CP098604.1 Genbank gene 168418 169380 . - . ID=gene-NDY25_00710;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=NDY25_00710 CP098604.1 Protein Homology CDS 168418 169380 . - 0 ID=cds-UUF02630.1;Parent=gene-NDY25_00710;Dbxref=NCBI_GP:UUF02630.1;Name=UUF02630.1;Ontology_term=GO:0006430,GO:0000166,GO:0004824,GO:0005524;gbkey=CDS;gene=epmA;go_function=nucleotide binding|0000166||IEA,lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158162.1;locus_tag=NDY25_00710;product=EF-P lysine aminoacylase EpmA;protein_id=UUF02630.1;transl_table=11 CP098604.1 Genbank gene 169377 171878 . - . ID=gene-NDY25_00715;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=NDY25_00715 CP098604.1 Protein Homology CDS 169377 171878 . - 0 ID=cds-UUF02631.1;Parent=gene-NDY25_00715;Dbxref=NCBI_GP:UUF02631.1;Name=UUF02631.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300671.1;locus_tag=NDY25_00715;product=NAD-dependent DNA ligase LigA;protein_id=UUF02631.1;transl_table=11 CP098604.1 Genbank gene 172072 173196 . + . ID=gene-NDY25_00720;Name=NDY25_00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00720 CP098604.1 Protein Homology CDS 172072 173196 . + 0 ID=cds-UUF02632.1;Parent=gene-NDY25_00720;Dbxref=NCBI_GP:UUF02632.1;Name=UUF02632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159896.1;locus_tag=NDY25_00720;product=pyridoxal phosphate-dependent aminotransferase;protein_id=UUF02632.1;transl_table=11 CP098604.1 Genbank gene 173522 174253 . - . ID=gene-NDY25_00725;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=NDY25_00725 CP098604.1 Protein Homology CDS 173522 174253 . - 0 ID=cds-UUF02633.1;Parent=gene-NDY25_00725;Dbxref=NCBI_GP:UUF02633.1;Name=UUF02633.1;Ontology_term=GO:0000917,GO:0005515;gbkey=CDS;gene=zipA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903841.1;locus_tag=NDY25_00725;product=cell division protein ZipA;protein_id=UUF02633.1;transl_table=11 CP098604.1 Genbank gene 174310 177813 . - . ID=gene-NDY25_00730;Name=smc;gbkey=Gene;gene=smc;gene_biotype=protein_coding;locus_tag=NDY25_00730 CP098604.1 Protein Homology CDS 174310 177813 . - 0 ID=cds-UUF02634.1;Parent=gene-NDY25_00730;Dbxref=NCBI_GP:UUF02634.1;Name=UUF02634.1;Ontology_term=GO:0007059,GO:0030261,GO:0005524;gbkey=CDS;gene=smc;go_function=ATP binding|0005524||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451583.1;locus_tag=NDY25_00730;product=chromosome segregation protein SMC;protein_id=UUF02634.1;transl_table=11 CP098604.1 Genbank gene 178023 178472 . - . ID=gene-NDY25_00735;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=NDY25_00735 CP098604.1 Protein Homology CDS 178023 178472 . - 0 ID=cds-UUF02635.1;Parent=gene-NDY25_00735;Dbxref=NCBI_GP:UUF02635.1;Name=UUF02635.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplI;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379584.1;locus_tag=NDY25_00735;product=50S ribosomal protein L9;protein_id=UUF02635.1;transl_table=11 CP098604.1 Genbank gene 178743 178973 . - . ID=gene-NDY25_00740;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=NDY25_00740 CP098604.1 Protein Homology CDS 178743 178973 . - 0 ID=cds-UUF02636.1;Parent=gene-NDY25_00740;Dbxref=NCBI_GP:UUF02636.1;Name=UUF02636.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804494.1;locus_tag=NDY25_00740;product=30S ribosomal protein S18;protein_id=UUF02636.1;transl_table=11 CP098604.1 Genbank gene 178985 179419 . - . ID=gene-NDY25_00745;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=NDY25_00745 CP098604.1 Protein Homology CDS 178985 179419 . - 0 ID=cds-UUF02637.1;Parent=gene-NDY25_00745;Dbxref=NCBI_GP:UUF02637.1;Name=UUF02637.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991245.1;locus_tag=NDY25_00745;product=30S ribosomal protein S6;protein_id=UUF02637.1;transl_table=11 CP098604.1 Genbank gene 179748 180086 . - . ID=gene-NDY25_00750;Name=NDY25_00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00750 CP098604.1 Protein Homology CDS 179748 180086 . - 0 ID=cds-UUF02638.1;Parent=gene-NDY25_00750;Dbxref=NCBI_GP:UUF02638.1;Name=UUF02638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966300.1;locus_tag=NDY25_00750;product=iron-sulfur cluster assembly accessory protein;protein_id=UUF02638.1;transl_table=11 CP098604.1 Genbank gene 180294 181688 . + . ID=gene-NDY25_00755;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=NDY25_00755 CP098604.1 Protein Homology CDS 180294 181688 . + 0 ID=cds-UUF02639.1;Parent=gene-NDY25_00755;Dbxref=NCBI_GP:UUF02639.1;Name=UUF02639.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237793.1;locus_tag=NDY25_00755;product=asparagine--tRNA ligase;protein_id=UUF02639.1;transl_table=11 CP098604.1 Genbank gene 181806 182111 . + . ID=gene-NDY25_00760;Name=NDY25_00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00760 CP098604.1 Protein Homology CDS 181806 182111 . + 0 ID=cds-UUF02640.1;Parent=gene-NDY25_00760;Dbxref=NCBI_GP:UUF02640.1;Name=UUF02640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158153.1;locus_tag=NDY25_00760;product=hypothetical protein;protein_id=UUF02640.1;transl_table=11 CP098604.1 Genbank gene 182108 182434 . + . ID=gene-NDY25_00765;Name=NDY25_00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00765 CP098604.1 Protein Homology CDS 182108 182434 . + 0 ID=cds-UUF02641.1;Parent=gene-NDY25_00765;Dbxref=NCBI_GP:UUF02641.1;Name=UUF02641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158152.1;locus_tag=NDY25_00765;product=hypothetical protein;protein_id=UUF02641.1;transl_table=11 CP098604.1 Genbank gene 182436 183074 . + . ID=gene-NDY25_00770;Name=NDY25_00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00770 CP098604.1 Protein Homology CDS 182436 183074 . + 0 ID=cds-UUF02642.1;Parent=gene-NDY25_00770;Dbxref=NCBI_GP:UUF02642.1;Name=UUF02642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379580.1;locus_tag=NDY25_00770;product=FMN-binding negative transcriptional regulator;protein_id=UUF02642.1;transl_table=11 CP098604.1 Genbank gene 183166 183828 . + . ID=gene-NDY25_00775;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=NDY25_00775 CP098604.1 Protein Homology CDS 183166 183828 . + 0 ID=cds-UUF02643.1;Parent=gene-NDY25_00775;Dbxref=NCBI_GP:UUF02643.1;Name=UUF02643.1;Ontology_term=GO:0015976,GO:0004089;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902447.1;locus_tag=NDY25_00775;product=carbonate dehydratase;protein_id=UUF02643.1;transl_table=11 CP098604.1 Genbank gene 183910 184440 . + . ID=gene-NDY25_00780;Name=NDY25_00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00780 CP098604.1 Protein Homology CDS 183910 184440 . + 0 ID=cds-UUF02644.1;Parent=gene-NDY25_00780;Dbxref=NCBI_GP:UUF02644.1;Name=UUF02644.1;Ontology_term=GO:0000334,GO:0005506;gbkey=CDS;go_function=3-hydroxyanthranilate 3%2C4-dioxygenase activity|0000334||IEA,iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036739.1;locus_tag=NDY25_00780;product=3-hydroxyanthranilate 3%2C4-dioxygenase;protein_id=UUF02644.1;transl_table=11 CP098604.1 Genbank gene 184659 186800 . + . ID=gene-NDY25_00785;Name=NDY25_00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00785 CP098604.1 Protein Homology CDS 184659 186800 . + 0 ID=cds-UUF04483.1;Parent=gene-NDY25_00785;Dbxref=NCBI_GP:UUF04483.1;Name=UUF04483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113390.1;locus_tag=NDY25_00785;product=FUSC family protein;protein_id=UUF04483.1;transl_table=11 CP098604.1 Genbank gene 186836 188107 . + . ID=gene-NDY25_00790;Name=kynU;gbkey=Gene;gene=kynU;gene_biotype=protein_coding;locus_tag=NDY25_00790 CP098604.1 Protein Homology CDS 186836 188107 . + 0 ID=cds-UUF02645.1;Parent=gene-NDY25_00790;Dbxref=NCBI_GP:UUF02645.1;Name=UUF02645.1;Ontology_term=GO:0019441,GO:0030429;gbkey=CDS;gene=kynU;go_function=kynureninase activity|0030429||IEA;go_process=tryptophan catabolic process to kynurenine|0019441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966269.1;locus_tag=NDY25_00790;product=kynureninase;protein_id=UUF02645.1;transl_table=11 CP098604.1 Genbank gene 188279 189646 . + . ID=gene-NDY25_00795;Name=NDY25_00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00795 CP098604.1 Protein Homology CDS 188279 189646 . + 0 ID=cds-UUF02646.1;Parent=gene-NDY25_00795;Dbxref=NCBI_GP:UUF02646.1;Name=UUF02646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576314.1;locus_tag=NDY25_00795;product=FAD-dependent monooxygenase;protein_id=UUF02646.1;transl_table=11 CP098604.1 Genbank gene 189753 191198 . + . ID=gene-NDY25_00800;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=NDY25_00800 CP098604.1 Protein Homology CDS 189753 191198 . + 0 ID=cds-UUF02647.1;Parent=gene-NDY25_00800;Dbxref=NCBI_GP:UUF02647.1;Name=UUF02647.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008852;gbkey=CDS;gene=sbcB;go_function=3'-5'-exoribonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,exodeoxyribonuclease I activity|0008852||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366550.1;locus_tag=NDY25_00800;product=exodeoxyribonuclease I;protein_id=UUF02647.1;transl_table=11 CP098604.1 Genbank gene 191195 191881 . + . ID=gene-NDY25_00805;Name=NDY25_00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00805 CP098604.1 Protein Homology CDS 191195 191881 . + 0 ID=cds-UUF02648.1;Parent=gene-NDY25_00805;Dbxref=NCBI_GP:UUF02648.1;Name=UUF02648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996685.1;locus_tag=NDY25_00805;product=DUF2461 domain-containing protein;protein_id=UUF02648.1;transl_table=11 CP098604.1 Genbank gene 192006 192572 . + . ID=gene-NDY25_00810;Name=NDY25_00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00810 CP098604.1 Protein Homology CDS 192006 192572 . + 0 ID=cds-UUF02649.1;Parent=gene-NDY25_00810;Dbxref=NCBI_GP:UUF02649.1;Name=UUF02649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804466.1;locus_tag=NDY25_00810;product=DUF2939 domain-containing protein;protein_id=UUF02649.1;transl_table=11 CP098604.1 Genbank gene 192653 193396 . - . ID=gene-NDY25_00815;Name=NDY25_00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00815 CP098604.1 Protein Homology CDS 192653 193396 . - 0 ID=cds-UUF02650.1;Parent=gene-NDY25_00815;Dbxref=NCBI_GP:UUF02650.1;Name=UUF02650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902455.1;locus_tag=NDY25_00815;product=transferase;protein_id=UUF02650.1;transl_table=11 CP098604.1 Genbank gene 193393 194358 . - . ID=gene-NDY25_00820;Name=NDY25_00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00820 CP098604.1 Protein Homology CDS 193393 194358 . - 0 ID=cds-UUF02651.1;Parent=gene-NDY25_00820;Dbxref=NCBI_GP:UUF02651.1;Name=UUF02651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450285.1;locus_tag=NDY25_00820;product=5'-nucleotidase;protein_id=UUF02651.1;transl_table=11 CP098604.1 Genbank gene 194602 195378 . - . ID=gene-NDY25_00825;Name=NDY25_00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00825 CP098604.1 Protein Homology CDS 194602 195378 . - 0 ID=cds-UUF02652.1;Parent=gene-NDY25_00825;Dbxref=NCBI_GP:UUF02652.1;Name=UUF02652.1;Ontology_term=GO:0006741,GO:0019674,GO:0003951;gbkey=CDS;go_function=NAD+ kinase activity|0003951||IEA;go_process=NADP biosynthetic process|0006741||IEA,NAD metabolic process|0019674||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919766.1;locus_tag=NDY25_00825;product=NAD kinase;protein_id=UUF02652.1;transl_table=11 CP098604.1 Genbank gene 195585 197720 . - . ID=gene-NDY25_00830;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=NDY25_00830 CP098604.1 Protein Homology CDS 195585 197720 . - 0 ID=cds-UUF02653.1;Parent=gene-NDY25_00830;Dbxref=NCBI_GP:UUF02653.1;Name=UUF02653.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902459.1;locus_tag=NDY25_00830;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=UUF02653.1;transl_table=11 CP098604.1 Genbank gene 197717 197908 . - . ID=gene-NDY25_00835;Name=NDY25_00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00835 CP098604.1 Protein Homology CDS 197717 197908 . - 0 ID=cds-UUF02654.1;Parent=gene-NDY25_00835;Dbxref=NCBI_GP:UUF02654.1;Name=UUF02654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155866.1;locus_tag=NDY25_00835;product=hypothetical protein;protein_id=UUF02654.1;transl_table=11 CP098604.1 Genbank gene 197887 199500 . - . ID=gene-NDY25_00840;Name=NDY25_00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00840 CP098604.1 Protein Homology CDS 197887 199500 . - 0 ID=cds-UUF02655.1;Parent=gene-NDY25_00840;Dbxref=NCBI_GP:UUF02655.1;Name=UUF02655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160314.1;locus_tag=NDY25_00840;product=ATP-binding cassette domain-containing protein;protein_id=UUF02655.1;transl_table=11 CP098604.1 Genbank gene 199684 200640 . - . ID=gene-NDY25_00845;Name=NDY25_00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00845 CP098604.1 Protein Homology CDS 199684 200640 . - 0 ID=cds-UUF02656.1;Parent=gene-NDY25_00845;Dbxref=NCBI_GP:UUF02656.1;Name=UUF02656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507379.1;locus_tag=NDY25_00845;product=SAM-dependent methyltransferase;protein_id=UUF02656.1;transl_table=11 CP098604.1 Genbank gene 200786 201292 . - . ID=gene-NDY25_00850;Name=NDY25_00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00850 CP098604.1 Protein Homology CDS 200786 201292 . - 0 ID=cds-UUF02657.1;Parent=gene-NDY25_00850;Dbxref=NCBI_GP:UUF02657.1;Name=UUF02657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429248.1;locus_tag=NDY25_00850;product=N-acetyltransferase;protein_id=UUF02657.1;transl_table=11 CP098604.1 Genbank gene 201333 201860 . - . ID=gene-NDY25_00855;Name=NDY25_00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00855 CP098604.1 Protein Homology CDS 201333 201860 . - 0 ID=cds-UUF02658.1;Parent=gene-NDY25_00855;Dbxref=NCBI_GP:UUF02658.1;Name=UUF02658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966252.1;locus_tag=NDY25_00855;product=hypothetical protein;protein_id=UUF02658.1;transl_table=11 CP098604.1 Genbank gene 201857 202348 . - . ID=gene-NDY25_00860;Name=NDY25_00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00860 CP098604.1 Protein Homology CDS 201857 202348 . - 0 ID=cds-UUF02659.1;Parent=gene-NDY25_00860;Dbxref=NCBI_GP:UUF02659.1;Name=UUF02659.1;Ontology_term=GO:0003824,GO:0030151,GO:0030170;gbkey=CDS;go_function=catalytic activity|0003824||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089837.1;locus_tag=NDY25_00860;product=MOSC domain-containing protein;protein_id=UUF02659.1;transl_table=11 CP098604.1 Genbank gene 202372 202947 . + . ID=gene-NDY25_00865;Name=NDY25_00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00865 CP098604.1 Protein Homology CDS 202372 202947 . + 0 ID=cds-UUF02660.1;Parent=gene-NDY25_00865;Dbxref=NCBI_GP:UUF02660.1;Name=UUF02660.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155861.1;locus_tag=NDY25_00865;product=N-acetylmuramoyl-L-alanine amidase;protein_id=UUF02660.1;transl_table=11 CP098604.1 Genbank gene 202957 203910 . - . ID=gene-NDY25_00870;Name=NDY25_00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00870 CP098604.1 Protein Homology CDS 202957 203910 . - 0 ID=cds-UUF02661.1;Parent=gene-NDY25_00870;Dbxref=NCBI_GP:UUF02661.1;Name=UUF02661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429239.1;locus_tag=NDY25_00870;product=DUF1684 domain-containing protein;protein_id=UUF02661.1;transl_table=11 CP098604.1 Genbank gene 204003 204875 . - . ID=gene-NDY25_00875;Name=NDY25_00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00875 CP098604.1 Protein Homology CDS 204003 204875 . - 0 ID=cds-UUF02662.1;Parent=gene-NDY25_00875;Dbxref=NCBI_GP:UUF02662.1;Name=UUF02662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926214.1;locus_tag=NDY25_00875;product=sulfurtransferase;protein_id=UUF02662.1;transl_table=11 CP098604.1 Genbank gene 204872 205669 . - . ID=gene-NDY25_00880;Name=NDY25_00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00880 CP098604.1 Protein Homology CDS 204872 205669 . - 0 ID=cds-UUF02663.1;Parent=gene-NDY25_00880;Dbxref=NCBI_GP:UUF02663.1;Name=UUF02663.1;Ontology_term=GO:0000287,GO:0010945;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,CoA pyrophosphatase activity|0010945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036720.1;locus_tag=NDY25_00880;product=CoA pyrophosphatase;protein_id=UUF02663.1;transl_table=11 CP098604.1 Genbank gene 205795 206493 . - . ID=gene-NDY25_00885;Name=NDY25_00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00885 CP098604.1 Protein Homology CDS 205795 206493 . - 0 ID=cds-UUF02664.1;Parent=gene-NDY25_00885;Dbxref=NCBI_GP:UUF02664.1;Name=UUF02664.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804447.1;locus_tag=NDY25_00885;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=UUF02664.1;transl_table=11 CP098604.1 Genbank gene 206657 207439 . + . ID=gene-NDY25_00890;Name=NDY25_00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00890 CP098604.1 Protein Homology CDS 206657 207439 . + 0 ID=cds-UUF02665.1;Parent=gene-NDY25_00890;Dbxref=NCBI_GP:UUF02665.1;Name=UUF02665.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966234.1;locus_tag=NDY25_00890;product=enoyl-CoA hydratase-related protein;protein_id=UUF02665.1;transl_table=11 CP098604.1 Genbank gene 207450 207830 . + . ID=gene-NDY25_00895;Name=NDY25_00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00895 CP098604.1 Protein Homology CDS 207450 207830 . + 0 ID=cds-UUF02666.1;Parent=gene-NDY25_00895;Dbxref=NCBI_GP:UUF02666.1;Name=UUF02666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502812.1;locus_tag=NDY25_00895;product=hypothetical protein;protein_id=UUF02666.1;transl_table=11 CP098604.1 Genbank gene 207827 208537 . + . ID=gene-NDY25_00900;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=NDY25_00900 CP098604.1 Protein Homology CDS 207827 208537 . + 0 ID=cds-UUF02667.1;Parent=gene-NDY25_00900;Dbxref=NCBI_GP:UUF02667.1;Name=UUF02667.1;Ontology_term=GO:0006281,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502811.1;locus_tag=NDY25_00900;product=endonuclease III;protein_id=UUF02667.1;transl_table=11 CP098604.1 Genbank gene 208780 210348 . - . ID=gene-NDY25_00905;Name=NDY25_00905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00905 CP098604.1 Protein Homology CDS 208780 210348 . - 0 ID=cds-UUF02668.1;Parent=gene-NDY25_00905;Dbxref=NCBI_GP:UUF02668.1;Name=UUF02668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162797.1;locus_tag=NDY25_00905;product=SulP family inorganic anion transporter;protein_id=UUF02668.1;transl_table=11 CP098604.1 Genbank gene 210360 211040 . - . ID=gene-NDY25_00910;Name=NDY25_00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00910 CP098604.1 Protein Homology CDS 210360 211040 . - 0 ID=cds-UUF02669.1;Parent=gene-NDY25_00910;Dbxref=NCBI_GP:UUF02669.1;Name=UUF02669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366497.1;locus_tag=NDY25_00910;product=carbonic anhydrase;protein_id=UUF02669.1;transl_table=11 CP098604.1 Genbank gene 211154 211474 . - . ID=gene-NDY25_00915;Name=NDY25_00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00915 CP098604.1 Protein Homology CDS 211154 211474 . - 0 ID=cds-UUF04484.1;Parent=gene-NDY25_00915;Dbxref=NCBI_GP:UUF04484.1;Name=UUF04484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902475.1;locus_tag=NDY25_00915;product=hypothetical protein;protein_id=UUF04484.1;transl_table=11 CP098604.1 Genbank gene 211814 213064 . + . ID=gene-NDY25_00920;Name=NDY25_00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00920 CP098604.1 Protein Homology CDS 211814 213064 . + 0 ID=cds-UUF02670.1;Parent=gene-NDY25_00920;Dbxref=NCBI_GP:UUF02670.1;Name=UUF02670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036714.1;locus_tag=NDY25_00920;product=OprO/OprP family phosphate-selective porin;protein_id=UUF02670.1;transl_table=11 CP098604.1 Genbank gene 213262 214281 . + . ID=gene-NDY25_00925;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=NDY25_00925 CP098604.1 Protein Homology CDS 213262 214281 . + 0 ID=cds-UUF02671.1;Parent=gene-NDY25_00925;Dbxref=NCBI_GP:UUF02671.1;Name=UUF02671.1;Ontology_term=GO:0035435,GO:0042301,GO:0043190;gbkey=CDS;gene=pstS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=phosphate ion binding|0042301||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408625.1;locus_tag=NDY25_00925;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=UUF02671.1;transl_table=11 CP098604.1 Genbank gene 214470 215564 . + . ID=gene-NDY25_00930;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=NDY25_00930 CP098604.1 Protein Homology CDS 214470 215564 . + 0 ID=cds-UUF02672.1;Parent=gene-NDY25_00930;Dbxref=NCBI_GP:UUF02672.1;Name=UUF02672.1;Ontology_term=GO:0015415,GO:0042301,GO:0030288,GO:0031362,GO:0055052;gbkey=CDS;gene=pstS;go_component=outer membrane-bounded periplasmic space|0030288||IEA,anchored component of external side of plasma membrane|0031362||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA,phosphate ion binding|0042301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966222.1;locus_tag=NDY25_00930;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=UUF02672.1;transl_table=11 CP098604.1 Genbank gene 215677 216651 . + . ID=gene-NDY25_00935;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=NDY25_00935 CP098604.1 Protein Homology CDS 215677 216651 . + 0 ID=cds-UUF02673.1;Parent=gene-NDY25_00935;Dbxref=NCBI_GP:UUF02673.1;Name=UUF02673.1;Ontology_term=GO:0015415,GO:0005887,GO:0055052;gbkey=CDS;gene=pstC;go_component=integral component of plasma membrane|0005887||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572163.1;locus_tag=NDY25_00935;product=phosphate ABC transporter permease subunit PstC;protein_id=UUF02673.1;transl_table=11 CP098604.1 Genbank gene 216651 217514 . + . ID=gene-NDY25_00940;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=NDY25_00940 CP098604.1 Protein Homology CDS 216651 217514 . + 0 ID=cds-UUF02674.1;Parent=gene-NDY25_00940;Dbxref=NCBI_GP:UUF02674.1;Name=UUF02674.1;Ontology_term=GO:0015415,GO:0005887,GO:0055052;gbkey=CDS;gene=pstA;go_component=integral component of plasma membrane|0005887||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237788.1;locus_tag=NDY25_00940;product=phosphate ABC transporter permease PstA;protein_id=UUF02674.1;transl_table=11 CP098604.1 Genbank gene 217537 218367 . + . ID=gene-NDY25_00945;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=NDY25_00945 CP098604.1 Protein Homology CDS 217537 218367 . + 0 ID=cds-UUF02675.1;Parent=gene-NDY25_00945;Dbxref=NCBI_GP:UUF02675.1;Name=UUF02675.1;Ontology_term=GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237787.1;locus_tag=NDY25_00945;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=UUF02675.1;transl_table=11 CP098604.1 Genbank gene 218496 219200 . + . ID=gene-NDY25_00950;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=NDY25_00950 CP098604.1 Protein Homology CDS 218496 219200 . + 0 ID=cds-UUF02676.1;Parent=gene-NDY25_00950;Dbxref=NCBI_GP:UUF02676.1;Name=UUF02676.1;Ontology_term=GO:0051049,GO:0003700;gbkey=CDS;gene=phoU;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transport|0051049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994733.1;locus_tag=NDY25_00950;product=phosphate signaling complex protein PhoU;protein_id=UUF02676.1;transl_table=11 CP098604.1 Genbank gene 219330 219737 . + . ID=gene-NDY25_00955;Name=NDY25_00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00955 CP098604.1 Protein Homology CDS 219330 219737 . + 0 ID=cds-UUF02677.1;Parent=gene-NDY25_00955;Dbxref=NCBI_GP:UUF02677.1;Name=UUF02677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160317.1;locus_tag=NDY25_00955;product=RcnB family protein;protein_id=UUF02677.1;transl_table=11 CP098604.1 Genbank gene 219880 220521 . + . ID=gene-NDY25_00960;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=NDY25_00960 CP098604.1 Protein Homology CDS 219880 220521 . + 0 ID=cds-UUF02678.1;Parent=gene-NDY25_00960;Dbxref=NCBI_GP:UUF02678.1;Name=UUF02678.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=exoribonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572178.1;locus_tag=NDY25_00960;product=ribonuclease T;protein_id=UUF02678.1;transl_table=11 CP098604.1 Genbank gene 220725 223769 . - . ID=gene-NDY25_00965;Name=NDY25_00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00965 CP098604.1 Protein Homology CDS 220725 223769 . - 0 ID=cds-UUF02679.1;Parent=gene-NDY25_00965;Dbxref=NCBI_GP:UUF02679.1;Name=UUF02679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114768.1;locus_tag=NDY25_00965;product=diguanylate cyclase;protein_id=UUF02679.1;transl_table=11 CP098604.1 Genbank gene 224024 224773 . - . ID=gene-NDY25_00970;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=NDY25_00970 CP098604.1 Protein Homology CDS 224024 224773 . - 0 ID=cds-UUF02680.1;Parent=gene-NDY25_00970;Dbxref=NCBI_GP:UUF02680.1;Name=UUF02680.1;Ontology_term=GO:0009451,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804425.1;locus_tag=NDY25_00970;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=UUF02680.1;transl_table=11 CP098604.1 Genbank pseudogene 224988 225074 . - . ID=gene-NDY25_00975;Name=NDY25_00975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_00975;pseudo=true CP098604.1 Protein Homology CDS 224988 225074 . - 0 ID=cds-NDY25_00975;Parent=gene-NDY25_00975;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366469.1;locus_tag=NDY25_00975;product=GFA family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 225249 227807 . - . ID=gene-NDY25_00980;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=NDY25_00980 CP098604.1 Protein Homology CDS 225249 227807 . - 0 ID=cds-UUF02681.1;Parent=gene-NDY25_00980;Dbxref=NCBI_GP:UUF02681.1;Name=UUF02681.1;Ontology_term=GO:0006401,GO:0008997;gbkey=CDS;gene=rnr;go_function=ribonuclease R activity|0008997||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346990.1;locus_tag=NDY25_00980;product=ribonuclease R;protein_id=UUF02681.1;transl_table=11 CP098604.1 Genbank gene 227929 228015 . + . ID=gene-NDY25_00985;Name=NDY25_00985;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_00985 CP098604.1 tRNAscan-SE tRNA 227929 228015 . + . ID=rna-NDY25_00985;Parent=gene-NDY25_00985;anticodon=(pos:227963..227965);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00985;product=tRNA-Leu CP098604.1 tRNAscan-SE exon 227929 228015 . + . ID=exon-NDY25_00985-1;Parent=rna-NDY25_00985;anticodon=(pos:227963..227965);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_00985;product=tRNA-Leu CP098604.1 Genbank gene 228136 229659 . - . ID=gene-NDY25_00990;Name=NDY25_00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00990 CP098604.1 Protein Homology CDS 228136 229659 . - 0 ID=cds-UUF02682.1;Parent=gene-NDY25_00990;Dbxref=NCBI_GP:UUF02682.1;Name=UUF02682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438702.1;locus_tag=NDY25_00990;product=platelet-activating factor acetylhydrolase IB subunit;protein_id=UUF02682.1;transl_table=11 CP098604.1 Genbank gene 230009 231157 . - . ID=gene-NDY25_00995;Name=NDY25_00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00995 CP098604.1 Protein Homology CDS 230009 231157 . - 0 ID=cds-UUF02683.1;Parent=gene-NDY25_00995;Dbxref=NCBI_GP:UUF02683.1;Name=UUF02683.1;Ontology_term=GO:0016627,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410250.1;locus_tag=NDY25_00995;product=acyl-CoA dehydrogenase family protein;protein_id=UUF02683.1;transl_table=11 CP098604.1 Genbank gene 231280 232275 . + . ID=gene-NDY25_01000;Name=NDY25_01000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01000 CP098604.1 Protein Homology CDS 231280 232275 . + 0 ID=cds-UUF02684.1;Parent=gene-NDY25_01000;Dbxref=NCBI_GP:UUF02684.1;Name=UUF02684.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450494.1;locus_tag=NDY25_01000;product=metalloregulator ArsR/SmtB family transcription factor;protein_id=UUF02684.1;transl_table=11 CP098604.1 Genbank gene 232272 233417 . + . ID=gene-NDY25_01005;Name=NDY25_01005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01005 CP098604.1 Protein Homology CDS 232272 233417 . + 0 ID=cds-UUF02685.1;Parent=gene-NDY25_01005;Dbxref=NCBI_GP:UUF02685.1;Name=UUF02685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380164.1;locus_tag=NDY25_01005;product=homocysteine S-methyltransferase family protein;protein_id=UUF02685.1;transl_table=11 CP098604.1 Genbank gene 233572 236325 . + . ID=gene-NDY25_01010;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=NDY25_01010 CP098604.1 Protein Homology CDS 233572 236325 . + 0 ID=cds-UUF02686.1;Parent=gene-NDY25_01010;Dbxref=NCBI_GP:UUF02686.1;Name=UUF02686.1;Ontology_term=GO:0009086,GO:0008705;gbkey=CDS;gene=metH;go_function=methionine synthase activity|0008705||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160303.1;locus_tag=NDY25_01010;product=methionine synthase;protein_id=UUF02686.1;transl_table=11 CP098604.1 Genbank gene 236756 237961 . - . ID=gene-NDY25_01015;Name=NDY25_01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01015 CP098604.1 Protein Homology CDS 236756 237961 . - 0 ID=cds-UUF02687.1;Parent=gene-NDY25_01015;Dbxref=NCBI_GP:UUF02687.1;Name=UUF02687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051002.1;locus_tag=NDY25_01015;product=AGE family epimerase/isomerase;protein_id=UUF02687.1;transl_table=11 CP098604.1 Genbank gene 237958 238944 . - . ID=gene-NDY25_01020;Name=NDY25_01020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01020 CP098604.1 Protein Homology CDS 237958 238944 . - 0 ID=cds-UUF02688.1;Parent=gene-NDY25_01020;Dbxref=NCBI_GP:UUF02688.1;Name=UUF02688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483712.1;locus_tag=NDY25_01020;product=carbohydrate kinase;protein_id=UUF02688.1;transl_table=11 CP098604.1 Genbank gene 238941 240251 . - . ID=gene-NDY25_01025;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=NDY25_01025 CP098604.1 Protein Homology CDS 238941 240251 . - 0 ID=cds-UUF02689.1;Parent=gene-NDY25_01025;Dbxref=NCBI_GP:UUF02689.1;Name=UUF02689.1;Ontology_term=GO:0015756,GO:0015535,GO:0005887;gbkey=CDS;gene=fucP;go_component=integral component of plasma membrane|0005887||IEA;go_function=fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408378.1;locus_tag=NDY25_01025;product=L-fucose:H+ symporter permease;protein_id=UUF02689.1;transl_table=11 CP098604.1 Genbank gene 240265 241395 . - . ID=gene-NDY25_01030;Name=NDY25_01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01030 CP098604.1 Protein Homology CDS 240265 241395 . - 0 ID=cds-UUF02690.1;Parent=gene-NDY25_01030;Dbxref=NCBI_GP:UUF02690.1;Name=UUF02690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451865.1;locus_tag=NDY25_01030;product=LacI family DNA-binding transcriptional regulator;protein_id=UUF02690.1;transl_table=11 CP098604.1 Genbank gene 241615 242451 . - . ID=gene-NDY25_01035;Name=NDY25_01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01035 CP098604.1 Protein Homology CDS 241615 242451 . - 0 ID=cds-UUF02691.1;Parent=gene-NDY25_01035;Dbxref=NCBI_GP:UUF02691.1;Name=UUF02691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483704.1;locus_tag=NDY25_01035;product=transporter;protein_id=UUF02691.1;transl_table=11 CP098604.1 Genbank gene 242701 243456 . - . ID=gene-NDY25_01040;Name=NDY25_01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01040 CP098604.1 Protein Homology CDS 242701 243456 . - 0 ID=cds-UUF02692.1;Parent=gene-NDY25_01040;Dbxref=NCBI_GP:UUF02692.1;Name=UUF02692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463037.1;locus_tag=NDY25_01040;product=DUF2058 family protein;protein_id=UUF02692.1;transl_table=11 CP098604.1 Genbank gene 243457 243693 . - . ID=gene-NDY25_01045;Name=NDY25_01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01045 CP098604.1 Protein Homology CDS 243457 243693 . - 0 ID=cds-UUF02693.1;Parent=gene-NDY25_01045;Dbxref=NCBI_GP:UUF02693.1;Name=UUF02693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036690.1;locus_tag=NDY25_01045;product=SlyX family protein;protein_id=UUF02693.1;transl_table=11 CP098604.1 Genbank gene 243686 245035 . - . ID=gene-NDY25_01050;Name=NDY25_01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01050 CP098604.1 Protein Homology CDS 243686 245035 . - 0 ID=cds-UUF02694.1;Parent=gene-NDY25_01050;Dbxref=NCBI_GP:UUF02694.1;Name=UUF02694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804407.1;locus_tag=NDY25_01050;product=UDP-glucose/GDP-mannose dehydrogenase family protein;protein_id=UUF02694.1;transl_table=11 CP098604.1 Genbank gene 245060 246031 . - . ID=gene-NDY25_01055;Name=NDY25_01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01055 CP098604.1 Protein Homology CDS 245060 246031 . - 0 ID=cds-UUF02695.1;Parent=gene-NDY25_01055;Dbxref=NCBI_GP:UUF02695.1;Name=UUF02695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463036.1;locus_tag=NDY25_01055;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=UUF02695.1;transl_table=11 CP098604.1 Genbank gene 246122 246679 . - . ID=gene-NDY25_01060;Name=NDY25_01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01060 CP098604.1 Protein Homology CDS 246122 246679 . - 0 ID=cds-UUF02696.1;Parent=gene-NDY25_01060;Dbxref=NCBI_GP:UUF02696.1;Name=UUF02696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963377.1;locus_tag=NDY25_01060;product=glutathione peroxidase;protein_id=UUF02696.1;transl_table=11 CP098604.1 Genbank gene 246814 247062 . + . ID=gene-NDY25_01065;Name=NDY25_01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01065 CP098604.1 Protein Homology CDS 246814 247062 . + 0 ID=cds-UUF02697.1;Parent=gene-NDY25_01065;Dbxref=NCBI_GP:UUF02697.1;Name=UUF02697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366438.1;locus_tag=NDY25_01065;product=hypothetical protein;protein_id=UUF02697.1;transl_table=11 CP098604.1 Genbank gene 247065 247427 . + . ID=gene-NDY25_01070;Name=NDY25_01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01070 CP098604.1 Protein Homology CDS 247065 247427 . + 0 ID=cds-UUF02698.1;Parent=gene-NDY25_01070;Dbxref=NCBI_GP:UUF02698.1;Name=UUF02698.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988451.1;locus_tag=NDY25_01070;product=GntR family transcriptional regulator;protein_id=UUF02698.1;transl_table=11 CP098604.1 Genbank gene 247424 248299 . + . ID=gene-NDY25_01075;Name=NDY25_01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01075 CP098604.1 Protein Homology CDS 247424 248299 . + 0 ID=cds-UUF02699.1;Parent=gene-NDY25_01075;Dbxref=NCBI_GP:UUF02699.1;Name=UUF02699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913764.1;locus_tag=NDY25_01075;product=ABC transporter ATP-binding protein;protein_id=UUF02699.1;transl_table=11 CP098604.1 Genbank gene 248296 249261 . + . ID=gene-NDY25_01080;Name=NDY25_01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01080 CP098604.1 Protein Homology CDS 248296 249261 . + 0 ID=cds-UUF02700.1;Parent=gene-NDY25_01080;Dbxref=NCBI_GP:UUF02700.1;Name=UUF02700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036684.1;locus_tag=NDY25_01080;product=ABC transporter permease;protein_id=UUF02700.1;transl_table=11 CP098604.1 Genbank gene 249276 250106 . + . ID=gene-NDY25_01085;Name=NDY25_01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01085 CP098604.1 Protein Homology CDS 249276 250106 . + 0 ID=cds-UUF02701.1;Parent=gene-NDY25_01085;Dbxref=NCBI_GP:UUF02701.1;Name=UUF02701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448702.1;locus_tag=NDY25_01085;product=DUF4097 domain-containing protein;protein_id=UUF02701.1;transl_table=11 CP098604.1 Genbank pseudogene 250139 250670 . + . ID=gene-NDY25_01090;Name=NDY25_01090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01090;pseudo=true CP098604.1 Protein Homology CDS 250139 250670 . + 0 ID=cds-NDY25_01090;Parent=gene-NDY25_01090;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483683.1;locus_tag=NDY25_01090;product=YggN family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 250879 251301 . + . ID=gene-NDY25_01095;Name=NDY25_01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01095 CP098604.1 Protein Homology CDS 250879 251301 . + 0 ID=cds-UUF02702.1;Parent=gene-NDY25_01095;Dbxref=NCBI_GP:UUF02702.1;Name=UUF02702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159043.1;locus_tag=NDY25_01095;product=hypothetical protein;protein_id=UUF02702.1;transl_table=11 CP098604.1 Genbank gene 251429 252835 . - . ID=gene-NDY25_01100;Name=NDY25_01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01100 CP098604.1 Protein Homology CDS 251429 252835 . - 0 ID=cds-UUF02703.1;Parent=gene-NDY25_01100;Dbxref=NCBI_GP:UUF02703.1;Name=UUF02703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483678.1;locus_tag=NDY25_01100;product=class II fumarate hydratase;protein_id=UUF02703.1;transl_table=11 CP098604.1 Genbank gene 253126 254448 . + . ID=gene-NDY25_01105;Name=NDY25_01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01105 CP098604.1 Protein Homology CDS 253126 254448 . + 0 ID=cds-UUF04485.1;Parent=gene-NDY25_01105;Dbxref=NCBI_GP:UUF04485.1;Name=UUF04485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925596.1;locus_tag=NDY25_01105;product=hemolysin family protein;protein_id=UUF04485.1;transl_table=11 CP098604.1 Genbank gene 254485 255852 . + . ID=gene-NDY25_01110;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=NDY25_01110 CP098604.1 Protein Homology CDS 254485 255852 . + 0 ID=cds-UUF02704.1;Parent=gene-NDY25_01110;Dbxref=NCBI_GP:UUF02704.1;Name=UUF02704.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156796.1;locus_tag=NDY25_01110;product=adenylosuccinate lyase;protein_id=UUF02704.1;transl_table=11 CP098604.1 Genbank gene 255931 256536 . + . ID=gene-NDY25_01115;Name=NDY25_01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01115 CP098604.1 Protein Homology CDS 255931 256536 . + 0 ID=cds-UUF02705.1;Parent=gene-NDY25_01115;Dbxref=NCBI_GP:UUF02705.1;Name=UUF02705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507333.1;locus_tag=NDY25_01115;product=DUF3060 domain-containing protein;protein_id=UUF02705.1;transl_table=11 CP098604.1 Genbank gene 256870 258369 . + . ID=gene-NDY25_01120;Name=NDY25_01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01120 CP098604.1 Protein Homology CDS 256870 258369 . + 0 ID=cds-UUF02706.1;Parent=gene-NDY25_01120;Dbxref=NCBI_GP:UUF02706.1;Name=UUF02706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448695.1;locus_tag=NDY25_01120;product=cupin domain-containing protein;protein_id=UUF02706.1;transl_table=11 CP098604.1 Genbank pseudogene 258366 259297 . + . ID=gene-NDY25_01125;Name=NDY25_01125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01125;pseudo=true CP098604.1 Protein Homology CDS 258366 259297 . + 0 ID=cds-NDY25_01125;Parent=gene-NDY25_01125;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571998.1;locus_tag=NDY25_01125;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 259479 262307 . + . ID=gene-NDY25_01130;Name=NDY25_01130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01130 CP098604.1 Protein Homology CDS 259479 262307 . + 0 ID=cds-UUF02707.1;Parent=gene-NDY25_01130;Dbxref=NCBI_GP:UUF02707.1;Name=UUF02707.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976;gbkey=CDS;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507330.1;locus_tag=NDY25_01130;product=2-oxoglutarate dehydrogenase E1 component;protein_id=UUF02707.1;transl_table=11 CP098604.1 Genbank gene 262350 263561 . + . ID=gene-NDY25_01135;Name=sucB;gbkey=Gene;gene=sucB;gene_biotype=protein_coding;locus_tag=NDY25_01135 CP098604.1 Protein Homology CDS 262350 263561 . + 0 ID=cds-UUF02708.1;Parent=gene-NDY25_01135;Dbxref=NCBI_GP:UUF02708.1;Name=UUF02708.1;Ontology_term=GO:0006099,GO:0006554,GO:0004149,GO:0045252;gbkey=CDS;gene=sucB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,lysine catabolic process|0006554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572000.1;locus_tag=NDY25_01135;product=dihydrolipoyllysine-residue succinyltransferase;protein_id=UUF02708.1;transl_table=11 CP098604.1 Genbank gene 263712 265148 . + . ID=gene-NDY25_01140;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=NDY25_01140 CP098604.1 Protein Homology CDS 263712 265148 . + 0 ID=cds-UUF02709.1;Parent=gene-NDY25_01140;Dbxref=NCBI_GP:UUF02709.1;Name=UUF02709.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159046.1;locus_tag=NDY25_01140;product=dihydrolipoyl dehydrogenase;protein_id=UUF02709.1;transl_table=11 CP098604.1 Genbank gene 265364 265957 . + . ID=gene-NDY25_01145;Name=NDY25_01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01145 CP098604.1 Protein Homology CDS 265364 265957 . + 0 ID=cds-UUF02710.1;Parent=gene-NDY25_01145;Dbxref=NCBI_GP:UUF02710.1;Name=UUF02710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366391.1;locus_tag=NDY25_01145;product=TIGR00730 family Rossman fold protein;protein_id=UUF02710.1;transl_table=11 CP098604.1 Genbank gene 266331 266933 . + . ID=gene-NDY25_01150;Name=NDY25_01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01150 CP098604.1 Protein Homology CDS 266331 266933 . + 0 ID=cds-UUF04486.1;Parent=gene-NDY25_01150;Dbxref=NCBI_GP:UUF04486.1;Name=UUF04486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901549.1;locus_tag=NDY25_01150;product=IMPACT family protein;protein_id=UUF04486.1;transl_table=11 CP098604.1 Genbank gene 267090 267362 . - . ID=gene-NDY25_01155;Name=NDY25_01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01155 CP098604.1 Protein Homology CDS 267090 267362 . - 0 ID=cds-UUF02711.1;Parent=gene-NDY25_01155;Dbxref=NCBI_GP:UUF02711.1;Name=UUF02711.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF036772.2;locus_tag=NDY25_01155;product=hypothetical protein;protein_id=UUF02711.1;transl_table=11 CP098604.1 Genbank pseudogene 267581 267991 . - . ID=gene-NDY25_01160;Name=NDY25_01160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01160;pseudo=true CP098604.1 Protein Homology CDS 267581 267991 . - 0 ID=cds-NDY25_01160;Parent=gene-NDY25_01160;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014114.2;locus_tag=NDY25_01160;product=LD-carboxypeptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 268301 270070 . + . ID=gene-NDY25_01165;Name=NDY25_01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01165 CP098604.1 Protein Homology CDS 268301 270070 . + 0 ID=cds-UUF02712.1;Parent=gene-NDY25_01165;Dbxref=NCBI_GP:UUF02712.1;Name=UUF02712.1;Ontology_term=GO:0055085,GO:0005524,GO:0042626,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156786.1;locus_tag=NDY25_01165;product=ABC transporter transmembrane domain-containing protein;protein_id=UUF02712.1;transl_table=11 CP098604.1 Genbank gene 270187 271086 . + . ID=gene-NDY25_01170;Name=NDY25_01170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01170 CP098604.1 Protein Homology CDS 270187 271086 . + 0 ID=cds-UUF02713.1;Parent=gene-NDY25_01170;Dbxref=NCBI_GP:UUF02713.1;Name=UUF02713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964693.1;locus_tag=NDY25_01170;product=hydrogen peroxide-inducible genes activator;protein_id=UUF02713.1;transl_table=11 CP098604.1 Genbank gene 271175 272863 . + . ID=gene-NDY25_01175;Name=NDY25_01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01175 CP098604.1 Protein Homology CDS 271175 272863 . + 0 ID=cds-UUF02714.1;Parent=gene-NDY25_01175;Dbxref=NCBI_GP:UUF02714.1;Name=UUF02714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171987.1;locus_tag=NDY25_01175;product=ABC transporter ATP-binding protein/permease;protein_id=UUF02714.1;transl_table=11 CP098604.1 Genbank gene 272847 273932 . + . ID=gene-NDY25_01180;Name=NDY25_01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01180 CP098604.1 Protein Homology CDS 272847 273932 . + 0 ID=cds-UUF02715.1;Parent=gene-NDY25_01180;Dbxref=NCBI_GP:UUF02715.1;Name=UUF02715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849801.1;locus_tag=NDY25_01180;product=HlyD family efflux transporter periplasmic adaptor subunit;protein_id=UUF02715.1;transl_table=11 CP098604.1 Genbank gene 273929 275332 . + . ID=gene-NDY25_01185;Name=NDY25_01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01185 CP098604.1 Protein Homology CDS 273929 275332 . + 0 ID=cds-UUF02716.1;Parent=gene-NDY25_01185;Dbxref=NCBI_GP:UUF02716.1;Name=UUF02716.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380228.1;locus_tag=NDY25_01185;product=TolC family protein;protein_id=UUF02716.1;transl_table=11 CP098604.1 Genbank gene 275476 275688 . + . ID=gene-NDY25_01190;Name=NDY25_01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01190 CP098604.1 Protein Homology CDS 275476 275688 . + 0 ID=cds-UUF02717.1;Parent=gene-NDY25_01190;Dbxref=NCBI_GP:UUF02717.1;Name=UUF02717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507319.1;locus_tag=NDY25_01190;product=hypothetical protein;protein_id=UUF02717.1;transl_table=11 CP098604.1 Genbank gene 275972 277099 . - . ID=gene-NDY25_01195;Name=NDY25_01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01195 CP098604.1 Protein Homology CDS 275972 277099 . - 0 ID=cds-UUF02718.1;Parent=gene-NDY25_01195;Dbxref=NCBI_GP:UUF02718.1;Name=UUF02718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449463.1;locus_tag=NDY25_01195;product=prephenate dehydrogenase;protein_id=UUF02718.1;transl_table=11 CP098604.1 Genbank gene 277096 278004 . - . ID=gene-NDY25_01200;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=NDY25_01200 CP098604.1 Protein Homology CDS 277096 278004 . - 0 ID=cds-UUF02719.1;Parent=gene-NDY25_01200;Dbxref=NCBI_GP:UUF02719.1;Name=UUF02719.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxY;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804365.1;locus_tag=NDY25_01200;product=pyridoxal kinase;protein_id=UUF02719.1;transl_table=11 CP098604.1 Genbank gene 278269 279399 . - . ID=gene-NDY25_01205;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=NDY25_01205 CP098604.1 Protein Homology CDS 278269 279399 . - 0 ID=cds-UUF02720.1;Parent=gene-NDY25_01205;Dbxref=NCBI_GP:UUF02720.1;Name=UUF02720.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438731.1;locus_tag=NDY25_01205;product=molecular chaperone DnaJ;protein_id=UUF02720.1;transl_table=11 CP098604.1 Genbank gene 279543 281471 . - . ID=gene-NDY25_01210;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=NDY25_01210 CP098604.1 Protein Homology CDS 279543 281471 . - 0 ID=cds-UUF02721.1;Parent=gene-NDY25_01210;Dbxref=NCBI_GP:UUF02721.1;Name=UUF02721.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010484469.1;locus_tag=NDY25_01210;product=molecular chaperone DnaK;protein_id=UUF02721.1;transl_table=11 CP098604.1 Genbank gene 281613 282131 . - . ID=gene-NDY25_01215;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=NDY25_01215 CP098604.1 Protein Homology CDS 281613 282131 . - 0 ID=cds-UUF02722.1;Parent=gene-NDY25_01215;Dbxref=NCBI_GP:UUF02722.1;Name=UUF02722.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483633.1;locus_tag=NDY25_01215;product=nucleotide exchange factor GrpE;protein_id=UUF02722.1;transl_table=11 CP098604.1 Genbank gene 282233 283285 . - . ID=gene-NDY25_01220;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=NDY25_01220 CP098604.1 Protein Homology CDS 282233 283285 . - 0 ID=cds-UUF02723.1;Parent=gene-NDY25_01220;Dbxref=NCBI_GP:UUF02723.1;Name=UUF02723.1;Ontology_term=GO:0009408,GO:0005737;gbkey=CDS;gene=hrcA;go_component=cytoplasm|0005737||IEA;go_process=response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237768.1;locus_tag=NDY25_01220;product=heat-inducible transcriptional repressor HrcA;protein_id=UUF02723.1;transl_table=11 CP098604.1 Genbank gene 283402 285066 . + . ID=gene-NDY25_01225;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=NDY25_01225 CP098604.1 Protein Homology CDS 283402 285066 . + 0 ID=cds-UUF02724.1;Parent=gene-NDY25_01225;Dbxref=NCBI_GP:UUF02724.1;Name=UUF02724.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116147.1;locus_tag=NDY25_01225;product=DNA repair protein RecN;protein_id=UUF02724.1;transl_table=11 CP098604.1 Genbank gene 285177 285587 . - . ID=gene-NDY25_01230;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=NDY25_01230 CP098604.1 Protein Homology CDS 285177 285587 . - 0 ID=cds-UUF04487.1;Parent=gene-NDY25_01230;Dbxref=NCBI_GP:UUF04487.1;Name=UUF04487.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804358.1;locus_tag=NDY25_01230;product=ferric iron uptake transcriptional regulator;protein_id=UUF04487.1;transl_table=11 CP098604.1 Genbank gene 285692 286087 . + . ID=gene-NDY25_01235;Name=bamE;gbkey=Gene;gene=bamE;gene_biotype=protein_coding;locus_tag=NDY25_01235 CP098604.1 Protein Homology CDS 285692 286087 . + 0 ID=cds-UUF02725.1;Parent=gene-NDY25_01235;Dbxref=NCBI_GP:UUF02725.1;Name=UUF02725.1;Ontology_term=GO:0019867;gbkey=CDS;gene=bamE;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449455.1;locus_tag=NDY25_01235;product=outer membrane protein assembly factor BamE;protein_id=UUF02725.1;transl_table=11 CP098604.1 Genbank pseudogene 286381 286638 . - . ID=gene-NDY25_01240;Name=NDY25_01240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01240;pseudo=true CP098604.1 Protein Homology CDS 286381 286638 . - 0 ID=cds-NDY25_01240;Parent=gene-NDY25_01240;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117027.1;locus_tag=NDY25_01240;product=RnfH family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 286642 287073 . - . ID=gene-NDY25_01245;Name=NDY25_01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01245 CP098604.1 Protein Homology CDS 286642 287073 . - 0 ID=cds-UUF02726.1;Parent=gene-NDY25_01245;Dbxref=NCBI_GP:UUF02726.1;Name=UUF02726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901567.1;locus_tag=NDY25_01245;product=type II toxin-antitoxin system RatA family toxin;protein_id=UUF02726.1;transl_table=11 CP098604.1 Genbank gene 287134 287637 . + . ID=gene-NDY25_01250;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=NDY25_01250 CP098604.1 Protein Homology CDS 287134 287637 . + 0 ID=cds-UUF02727.1;Parent=gene-NDY25_01250;Dbxref=NCBI_GP:UUF02727.1;Name=UUF02727.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050971.1;locus_tag=NDY25_01250;product=SsrA-binding protein SmpB;protein_id=UUF02727.1;transl_table=11 CP098604.1 Genbank gene 287770 290220 . - . ID=gene-NDY25_01255;Name=NDY25_01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01255 CP098604.1 Protein Homology CDS 287770 290220 . - 0 ID=cds-UUF02728.1;Parent=gene-NDY25_01255;Dbxref=NCBI_GP:UUF02728.1;Name=UUF02728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163234.1;locus_tag=NDY25_01255;product=S8 family serine peptidase;protein_id=UUF02728.1;transl_table=11 CP098604.1 Genbank gene 290356 290752 . + . ID=gene-NDY25_01260;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=NDY25_01260 CP098604.1 cmsearch tmRNA 290356 290752 . + . ID=rna-NDY25_01260;Parent=gene-NDY25_01260;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_01260;product=transfer-messenger RNA CP098604.1 cmsearch exon 290356 290752 . + . ID=exon-NDY25_01260-1;Parent=rna-NDY25_01260;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_01260;product=transfer-messenger RNA CP098604.1 Genbank pseudogene 290860 291858 . + . ID=gene-NDY25_01265;Name=NDY25_01265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01265;pseudo=true CP098604.1 Protein Homology CDS 290860 291858 . + 0 ID=cds-NDY25_01265;Parent=gene-NDY25_01265;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438743.1;locus_tag=NDY25_01265;product=integrase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 291922 293066 . + . ID=gene-NDY25_01270;Name=NDY25_01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01270 CP098604.1 Protein Homology CDS 291922 292159 . + 0 ID=cds-UUF02729.1;Parent=gene-NDY25_01270;Dbxref=NCBI_GP:UUF02729.1;Name=UUF02729.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_01270;product=IS3 family transposase;protein_id=UUF02729.1;transl_table=11 CP098604.1 Protein Homology CDS 292159 293066 . + 2 ID=cds-UUF02729.1;Parent=gene-NDY25_01270;Dbxref=NCBI_GP:UUF02729.1;Name=UUF02729.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_01270;product=IS3 family transposase;protein_id=UUF02729.1;transl_table=11 CP098604.1 Genbank gene 293781 294572 . + . ID=gene-NDY25_01275;Name=NDY25_01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01275 CP098604.1 GeneMarkS-2+ CDS 293781 294572 . + 0 ID=cds-UUF02730.1;Parent=gene-NDY25_01275;Dbxref=NCBI_GP:UUF02730.1;Name=UUF02730.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_01275;product=hypothetical protein;protein_id=UUF02730.1;transl_table=11 CP098604.1 Genbank gene 294934 295368 . - . ID=gene-NDY25_01280;Name=NDY25_01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01280 CP098604.1 Protein Homology CDS 294934 295368 . - 0 ID=cds-UUF02731.1;Parent=gene-NDY25_01280;Dbxref=NCBI_GP:UUF02731.1;Name=UUF02731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258452.1;locus_tag=NDY25_01280;product=helix-turn-helix domain-containing protein;protein_id=UUF02731.1;transl_table=11 CP098604.1 Genbank gene 295456 295695 . + . ID=gene-NDY25_01285;Name=NDY25_01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01285 CP098604.1 Protein Homology CDS 295456 295695 . + 0 ID=cds-UUF04488.1;Parent=gene-NDY25_01285;Dbxref=NCBI_GP:UUF04488.1;Name=UUF04488.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR04111.1;locus_tag=NDY25_01285;product=DNA-binding protein;protein_id=UUF04488.1;transl_table=11 CP098604.1 Genbank gene 295750 296016 . + . ID=gene-NDY25_01290;Name=NDY25_01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01290 CP098604.1 Protein Homology CDS 295750 296016 . + 0 ID=cds-UUF04489.1;Parent=gene-NDY25_01290;Dbxref=NCBI_GP:UUF04489.1;Name=UUF04489.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016487.2;locus_tag=NDY25_01290;product=hypothetical protein;protein_id=UUF04489.1;transl_table=11 CP098604.1 Genbank gene 296027 296305 . + . ID=gene-NDY25_01295;Name=NDY25_01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01295 CP098604.1 Protein Homology CDS 296027 296305 . + 0 ID=cds-UUF02732.1;Parent=gene-NDY25_01295;Dbxref=NCBI_GP:UUF02732.1;Name=UUF02732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851009.1;locus_tag=NDY25_01295;product=hypothetical protein;protein_id=UUF02732.1;transl_table=11 CP098604.1 Genbank pseudogene 296525 299221 . + . ID=gene-NDY25_01300;Name=NDY25_01300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01300;pseudo=true CP098604.1 Protein Homology CDS 296525 299221 . + 0 ID=cds-NDY25_01300;Parent=gene-NDY25_01300;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258449.1;locus_tag=NDY25_01300;product=toprim domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 299544 299761 . + . ID=gene-NDY25_01305;Name=NDY25_01305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01305;pseudo=true CP098604.1 Protein Homology CDS 299544 299761 . + 0 ID=cds-NDY25_01305;Parent=gene-NDY25_01305;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929523.1;locus_tag=NDY25_01305;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 299790 300044 . + . ID=gene-NDY25_01310;Name=NDY25_01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01310 CP098604.1 Protein Homology CDS 299790 300044 . + 0 ID=cds-UUF02733.1;Parent=gene-NDY25_01310;Dbxref=NCBI_GP:UUF02733.1;Name=UUF02733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091200.1;locus_tag=NDY25_01310;product=hypothetical protein;protein_id=UUF02733.1;transl_table=11 CP098604.1 Genbank gene 300044 300316 . + . ID=gene-NDY25_01315;Name=NDY25_01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01315 CP098604.1 Protein Homology CDS 300044 300316 . + 0 ID=cds-UUF02734.1;Parent=gene-NDY25_01315;Dbxref=NCBI_GP:UUF02734.1;Name=UUF02734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091201.1;locus_tag=NDY25_01315;product=hypothetical protein;protein_id=UUF02734.1;transl_table=11 CP098604.1 Genbank gene 300395 300820 . + . ID=gene-NDY25_01320;Name=NDY25_01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01320 CP098604.1 Protein Homology CDS 300395 300820 . + 0 ID=cds-UUF02735.1;Parent=gene-NDY25_01320;Dbxref=NCBI_GP:UUF02735.1;Name=UUF02735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472864.1;locus_tag=NDY25_01320;product=hypothetical protein;protein_id=UUF02735.1;transl_table=11 CP098604.1 Genbank gene 300813 300995 . + . ID=gene-NDY25_01325;Name=NDY25_01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01325 CP098604.1 Protein Homology CDS 300813 300995 . + 0 ID=cds-UUF02736.1;Parent=gene-NDY25_01325;Dbxref=NCBI_GP:UUF02736.1;Name=UUF02736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471751.1;locus_tag=NDY25_01325;product=hypothetical protein;protein_id=UUF02736.1;transl_table=11 CP098604.1 Genbank gene 300988 301260 . + . ID=gene-NDY25_01330;Name=NDY25_01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01330 CP098604.1 Protein Homology CDS 300988 301260 . + 0 ID=cds-UUF02737.1;Parent=gene-NDY25_01330;Dbxref=NCBI_GP:UUF02737.1;Name=UUF02737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572785.1;locus_tag=NDY25_01330;product=hypothetical protein;protein_id=UUF02737.1;transl_table=11 CP098604.1 Genbank gene 301257 301481 . + . ID=gene-NDY25_01335;Name=NDY25_01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01335 CP098604.1 Protein Homology CDS 301257 301481 . + 0 ID=cds-UUF02738.1;Parent=gene-NDY25_01335;Dbxref=NCBI_GP:UUF02738.1;Name=UUF02738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091205.1;locus_tag=NDY25_01335;product=hypothetical protein;protein_id=UUF02738.1;transl_table=11 CP098604.1 Genbank gene 301747 301956 . + . ID=gene-NDY25_01340;Name=NDY25_01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01340 CP098604.1 Protein Homology CDS 301747 301956 . + 0 ID=cds-UUF02739.1;Parent=gene-NDY25_01340;Dbxref=NCBI_GP:UUF02739.1;Name=UUF02739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167594.1;locus_tag=NDY25_01340;product=hypothetical protein;protein_id=UUF02739.1;transl_table=11 CP098604.1 Genbank gene 301953 302171 . + . ID=gene-NDY25_01345;Name=NDY25_01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01345 CP098604.1 Protein Homology CDS 301953 302171 . + 0 ID=cds-UUF02740.1;Parent=gene-NDY25_01345;Dbxref=NCBI_GP:UUF02740.1;Name=UUF02740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572794.1;locus_tag=NDY25_01345;product=hypothetical protein;protein_id=UUF02740.1;transl_table=11 CP098604.1 Genbank gene 302171 303412 . + . ID=gene-NDY25_01350;Name=NDY25_01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01350 CP098604.1 Protein Homology CDS 302171 303412 . + 0 ID=cds-UUF02741.1;Parent=gene-NDY25_01350;Dbxref=NCBI_GP:UUF02741.1;Name=UUF02741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051722.1;locus_tag=NDY25_01350;product=integrase;protein_id=UUF02741.1;transl_table=11 CP098604.1 Genbank gene 303489 303565 . - . ID=gene-NDY25_01355;Name=NDY25_01355;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_01355 CP098604.1 tRNAscan-SE tRNA 303489 303565 . - . ID=rna-NDY25_01355;Parent=gene-NDY25_01355;anticodon=(pos:complement(303529..303531));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_01355;product=tRNA-Asn CP098604.1 tRNAscan-SE exon 303489 303565 . - . ID=exon-NDY25_01355-1;Parent=rna-NDY25_01355;anticodon=(pos:complement(303529..303531));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_01355;product=tRNA-Asn CP098604.1 Genbank gene 303628 304002 . - . ID=gene-NDY25_01360;Name=NDY25_01360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01360 CP098604.1 Protein Homology CDS 303628 304002 . - 0 ID=cds-UUF04490.1;Parent=gene-NDY25_01360;Dbxref=NCBI_GP:UUF04490.1;Name=UUF04490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019659012.1;locus_tag=NDY25_01360;product=pilus assembly protein PilE;protein_id=UUF04490.1;transl_table=11 CP098604.1 Genbank gene 304312 307530 . - . ID=gene-NDY25_01365;Name=NDY25_01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01365 CP098604.1 Protein Homology CDS 304312 307530 . - 0 ID=cds-UUF02742.1;Parent=gene-NDY25_01365;Dbxref=NCBI_GP:UUF02742.1;Name=UUF02742.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017388.2;locus_tag=NDY25_01365;product=PilC/PilY family type IV pilus protein;protein_id=UUF02742.1;transl_table=11 CP098604.1 Genbank gene 307496 307792 . - . ID=gene-NDY25_01370;Name=NDY25_01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01370 CP098604.1 GeneMarkS-2+ CDS 307496 307792 . - 0 ID=cds-UUF02743.1;Parent=gene-NDY25_01370;Dbxref=NCBI_GP:UUF02743.1;Name=UUF02743.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_01370;product=hypothetical protein;protein_id=UUF02743.1;transl_table=11 CP098604.1 Genbank gene 307802 308332 . - . ID=gene-NDY25_01375;Name=NDY25_01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01375 CP098604.1 Protein Homology CDS 307802 308332 . - 0 ID=cds-UUF02744.1;Parent=gene-NDY25_01375;Dbxref=NCBI_GP:UUF02744.1;Name=UUF02744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005408859.1;locus_tag=NDY25_01375;product=PilX N-terminal domain-containing pilus assembly protein;protein_id=UUF02744.1;transl_table=11 CP098604.1 Genbank pseudogene 308322 309457 . - . ID=gene-NDY25_01380;Name=NDY25_01380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01380;pseudo=true CP098604.1 Protein Homology CDS 308322 309457 . - 0 ID=cds-NDY25_01380;Parent=gene-NDY25_01380;Note=frameshifted;Ontology_term=GO:0043683;gbkey=CDS;go_process=type IV pilus assembly|0043683||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037627.1;locus_tag=NDY25_01380;product=PilW family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 309454 309930 . - . ID=gene-NDY25_01385;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=NDY25_01385 CP098604.1 Protein Homology CDS 309454 309930 . - 0 ID=cds-UUF02745.1;Parent=gene-NDY25_01385;Dbxref=NCBI_GP:UUF02745.1;Name=UUF02745.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037628.1;locus_tag=NDY25_01385;product=type IV pilus modification protein PilV;protein_id=UUF02745.1;transl_table=11 CP098604.1 Genbank gene 309927 310472 . - . ID=gene-NDY25_01390;Name=NDY25_01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01390 CP098604.1 Protein Homology CDS 309927 310472 . - 0 ID=cds-UUF02746.1;Parent=gene-NDY25_01390;Dbxref=NCBI_GP:UUF02746.1;Name=UUF02746.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: protein motif:HMM:NF023444.2;locus_tag=NDY25_01390;product=GspH/FimT family pseudopilin;protein_id=UUF02746.1;transl_table=11 CP098604.1 Genbank gene 310586 311971 . - . ID=gene-NDY25_01395;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=NDY25_01395 CP098604.1 Protein Homology CDS 310586 311971 . - 0 ID=cds-UUF02747.1;Parent=gene-NDY25_01395;Dbxref=NCBI_GP:UUF02747.1;Name=UUF02747.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154671.1;locus_tag=NDY25_01395;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=UUF02747.1;transl_table=11 CP098604.1 Genbank gene 312074 315283 . - . ID=gene-NDY25_01400;Name=NDY25_01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01400 CP098604.1 Protein Homology CDS 312074 315283 . - 0 ID=cds-UUF02748.1;Parent=gene-NDY25_01400;Dbxref=NCBI_GP:UUF02748.1;Name=UUF02748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167812.1;locus_tag=NDY25_01400;product=TonB-dependent receptor;protein_id=UUF02748.1;transl_table=11 CP098604.1 Genbank gene 315844 316443 . - . ID=gene-NDY25_01405;Name=NDY25_01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01405 CP098604.1 Protein Homology CDS 315844 316443 . - 0 ID=cds-UUF02749.1;Parent=gene-NDY25_01405;Dbxref=NCBI_GP:UUF02749.1;Name=UUF02749.1;Ontology_term=GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810180.1;locus_tag=NDY25_01405;product=YhgN family NAAT transporter;protein_id=UUF02749.1;transl_table=11 CP098604.1 Genbank gene 316440 317183 . - . ID=gene-NDY25_01410;Name=NDY25_01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01410 CP098604.1 Protein Homology CDS 316440 317183 . - 0 ID=cds-UUF02750.1;Parent=gene-NDY25_01410;Dbxref=NCBI_GP:UUF02750.1;Name=UUF02750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503773.1;locus_tag=NDY25_01410;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=UUF02750.1;transl_table=11 CP098604.1 Genbank gene 317180 317500 . - . ID=gene-NDY25_01415;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=NDY25_01415 CP098604.1 Protein Homology CDS 317180 317500 . - 0 ID=cds-UUF02751.1;Parent=gene-NDY25_01415;Dbxref=NCBI_GP:UUF02751.1;Name=UUF02751.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485599.1;locus_tag=NDY25_01415;product=Grx4 family monothiol glutaredoxin;protein_id=UUF02751.1;transl_table=11 CP098604.1 Genbank gene 317622 318200 . + . ID=gene-NDY25_01420;Name=NDY25_01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01420 CP098604.1 Protein Homology CDS 317622 318200 . + 0 ID=cds-UUF02752.1;Parent=gene-NDY25_01420;Dbxref=NCBI_GP:UUF02752.1;Name=UUF02752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259727.1;locus_tag=NDY25_01420;product=superoxide dismutase;protein_id=UUF02752.1;transl_table=11 CP098604.1 Genbank gene 318254 319016 . - . ID=gene-NDY25_01425;Name=NDY25_01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01425 CP098604.1 Protein Homology CDS 318697 319016 . - 0 ID=cds-UUF04491.1;Parent=gene-NDY25_01425;Dbxref=NCBI_GP:UUF04491.1;Name=UUF04491.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_01425;product=IS5 family transposase;protein_id=UUF04491.1;transl_table=11 CP098604.1 Protein Homology CDS 318254 318698 . - 1 ID=cds-UUF04491.1;Parent=gene-NDY25_01425;Dbxref=NCBI_GP:UUF04491.1;Name=UUF04491.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_01425;product=IS5 family transposase;protein_id=UUF04491.1;transl_table=11 CP098604.1 Genbank gene 319180 320325 . - . ID=gene-NDY25_01430;Name=NDY25_01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01430 CP098604.1 Protein Homology CDS 319180 320325 . - 0 ID=cds-UUF02753.1;Parent=gene-NDY25_01430;Dbxref=NCBI_GP:UUF02753.1;Name=UUF02753.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450541.1;locus_tag=NDY25_01430;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=UUF02753.1;transl_table=11 CP098604.1 Genbank gene 320322 320825 . - . ID=gene-NDY25_01435;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=NDY25_01435 CP098604.1 Protein Homology CDS 320322 320825 . - 0 ID=cds-UUF02754.1;Parent=gene-NDY25_01435;Dbxref=NCBI_GP:UUF02754.1;Name=UUF02754.1;Ontology_term=GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468225.1;locus_tag=NDY25_01435;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=UUF02754.1;transl_table=11 CP098604.1 Genbank gene 320884 321153 . + . ID=gene-NDY25_01440;Name=NDY25_01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01440 CP098604.1 Protein Homology CDS 320884 321153 . + 0 ID=cds-UUF02755.1;Parent=gene-NDY25_01440;Dbxref=NCBI_GP:UUF02755.1;Name=UUF02755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570984.1;locus_tag=NDY25_01440;product=Trm112 family protein;protein_id=UUF02755.1;transl_table=11 CP098604.1 Genbank gene 321150 322034 . + . ID=gene-NDY25_01445;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=NDY25_01445 CP098604.1 Protein Homology CDS 321150 322034 . + 0 ID=cds-UUF02756.1;Parent=gene-NDY25_01445;Dbxref=NCBI_GP:UUF02756.1;Name=UUF02756.1;Ontology_term=GO:0019363,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=pyridine nucleotide biosynthetic process|0019363||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450544.1;locus_tag=NDY25_01445;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=UUF02756.1;transl_table=11 CP098604.1 Genbank gene 322098 323150 . + . ID=gene-NDY25_01450;Name=NDY25_01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01450 CP098604.1 Protein Homology CDS 322098 323150 . + 0 ID=cds-UUF02757.1;Parent=gene-NDY25_01450;Dbxref=NCBI_GP:UUF02757.1;Name=UUF02757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920230.1;locus_tag=NDY25_01450;product=DUF2272 domain-containing protein;protein_id=UUF02757.1;transl_table=11 CP098604.1 Genbank gene 323662 325776 . - . ID=gene-NDY25_01455;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=NDY25_01455 CP098604.1 Protein Homology CDS 323662 325776 . - 0 ID=cds-UUF02758.1;Parent=gene-NDY25_01455;Dbxref=NCBI_GP:UUF02758.1;Name=UUF02758.1;Ontology_term=GO:0006402,GO:0004654;gbkey=CDS;gene=pnp;go_function=polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259733.1;locus_tag=NDY25_01455;product=polyribonucleotide nucleotidyltransferase;protein_id=UUF02758.1;transl_table=11 CP098604.1 Genbank gene 325945 326205 . - . ID=gene-NDY25_01460;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=NDY25_01460 CP098604.1 Protein Homology CDS 325945 326205 . - 0 ID=cds-UUF02759.1;Parent=gene-NDY25_01460;Dbxref=NCBI_GP:UUF02759.1;Name=UUF02759.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsO;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810194.1;locus_tag=NDY25_01460;product=30S ribosomal protein S15;protein_id=UUF02759.1;transl_table=11 CP098604.1 Genbank gene 326362 327288 . - . ID=gene-NDY25_01465;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=NDY25_01465 CP098604.1 Protein Homology CDS 326362 327288 . - 0 ID=cds-UUF02760.1;Parent=gene-NDY25_01465;Dbxref=NCBI_GP:UUF02760.1;Name=UUF02760.1;Ontology_term=GO:0006400,GO:0004730;gbkey=CDS;gene=truB;go_function=pseudouridylate synthase activity|0004730||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848688.1;locus_tag=NDY25_01465;product=tRNA pseudouridine(55) synthase TruB;protein_id=UUF02760.1;transl_table=11 CP098604.1 Genbank gene 327371 327763 . - . ID=gene-NDY25_01470;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=NDY25_01470 CP098604.1 Protein Homology CDS 327371 327763 . - 0 ID=cds-UUF02761.1;Parent=gene-NDY25_01470;Dbxref=NCBI_GP:UUF02761.1;Name=UUF02761.1;Ontology_term=GO:0006396,GO:0019843;gbkey=CDS;gene=rbfA;go_function=rRNA binding|0019843||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051765.1;locus_tag=NDY25_01470;product=30S ribosome-binding factor RbfA;protein_id=UUF02761.1;transl_table=11 CP098604.1 Genbank gene 327937 330648 . - . ID=gene-NDY25_01475;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=NDY25_01475 CP098604.1 Protein Homology CDS 327937 330648 . - 0 ID=cds-UUF02762.1;Parent=gene-NDY25_01475;Dbxref=NCBI_GP:UUF02762.1;Name=UUF02762.1;Ontology_term=GO:0006413,GO:0003743,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159225.1;locus_tag=NDY25_01475;product=translation initiation factor IF-2;protein_id=UUF02762.1;transl_table=11 CP098604.1 Genbank gene 330744 332255 . - . ID=gene-NDY25_01480;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=NDY25_01480 CP098604.1 Protein Homology CDS 330744 332255 . - 0 ID=cds-UUF02763.1;Parent=gene-NDY25_01480;Dbxref=NCBI_GP:UUF02763.1;Name=UUF02763.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusA;go_process=DNA-templated transcription%2C termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660577.1;locus_tag=NDY25_01480;product=transcription termination factor NusA;protein_id=UUF02763.1;transl_table=11 CP098604.1 Genbank gene 332260 332850 . - . ID=gene-NDY25_01485;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=NDY25_01485 CP098604.1 Protein Homology CDS 332260 332850 . - 0 ID=cds-UUF02764.1;Parent=gene-NDY25_01485;Dbxref=NCBI_GP:UUF02764.1;Name=UUF02764.1;gbkey=CDS;gene=rimP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300413.1;locus_tag=NDY25_01485;product=ribosome maturation factor RimP;protein_id=UUF02764.1;transl_table=11 CP098604.1 Genbank gene 333062 333138 . - . ID=gene-NDY25_01490;Name=NDY25_01490;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_01490 CP098604.1 tRNAscan-SE tRNA 333062 333138 . - . ID=rna-NDY25_01490;Parent=gene-NDY25_01490;anticodon=(pos:complement(333102..333104));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_01490;product=tRNA-Met CP098604.1 tRNAscan-SE exon 333062 333138 . - . ID=exon-NDY25_01490-1;Parent=rna-NDY25_01490;anticodon=(pos:complement(333102..333104));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_01490;product=tRNA-Met CP098604.1 Genbank gene 333342 334802 . - . ID=gene-NDY25_01495;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=NDY25_01495 CP098604.1 Protein Homology CDS 333342 334802 . - 0 ID=cds-UUF02765.1;Parent=gene-NDY25_01495;Dbxref=NCBI_GP:UUF02765.1;Name=UUF02765.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485567.1;locus_tag=NDY25_01495;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=UUF02765.1;transl_table=11 CP098604.1 Genbank gene 334839 336341 . - . ID=gene-NDY25_01500;Name=NDY25_01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01500 CP098604.1 Protein Homology CDS 334839 336341 . - 0 ID=cds-UUF02766.1;Parent=gene-NDY25_01500;Dbxref=NCBI_GP:UUF02766.1;Name=UUF02766.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300411.1;locus_tag=NDY25_01500;product=NADH-quinone oxidoreductase subunit M;protein_id=UUF02766.1;transl_table=11 CP098604.1 Genbank pseudogene 336362 338517 . - . ID=gene-NDY25_01505;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=pseudogene;locus_tag=NDY25_01505;pseudo=true CP098604.1 Protein Homology CDS 336362 338517 . - 0 ID=cds-NDY25_01505;Parent=gene-NDY25_01505;Note=frameshifted;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485563.1;locus_tag=NDY25_01505;product=NADH-quinone oxidoreductase subunit L;pseudo=true;transl_table=11 CP098604.1 Genbank gene 338525 338830 . - . ID=gene-NDY25_01510;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=NDY25_01510 CP098604.1 Protein Homology CDS 338525 338830 . - 0 ID=cds-UUF02767.1;Parent=gene-NDY25_01510;Dbxref=NCBI_GP:UUF02767.1;Name=UUF02767.1;gbkey=CDS;gene=nuoK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450557.1;locus_tag=NDY25_01510;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=UUF02767.1;transl_table=11 CP098604.1 Genbank gene 338827 339489 . - . ID=gene-NDY25_01515;Name=NDY25_01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01515 CP098604.1 Protein Homology CDS 338827 339489 . - 0 ID=cds-UUF04492.1;Parent=gene-NDY25_01515;Dbxref=NCBI_GP:UUF04492.1;Name=UUF04492.1;Ontology_term=GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237526.1;locus_tag=NDY25_01515;product=NADH-quinone oxidoreductase subunit J;protein_id=UUF04492.1;transl_table=11 CP098604.1 Genbank gene 339494 339982 . - . ID=gene-NDY25_01520;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=NDY25_01520 CP098604.1 Protein Homology CDS 339494 339982 . - 0 ID=cds-UUF02768.1;Parent=gene-NDY25_01520;Dbxref=NCBI_GP:UUF02768.1;Name=UUF02768.1;Ontology_term=GO:0016651,GO:0051539;gbkey=CDS;gene=nuoI;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927506.1;locus_tag=NDY25_01520;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=UUF02768.1;transl_table=11 CP098604.1 Genbank gene 339986 341080 . - . ID=gene-NDY25_01525;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=NDY25_01525 CP098604.1 Protein Homology CDS 339986 341080 . - 0 ID=cds-UUF02769.1;Parent=gene-NDY25_01525;Dbxref=NCBI_GP:UUF02769.1;Name=UUF02769.1;Ontology_term=GO:0016020;gbkey=CDS;gene=nuoH;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375869.1;locus_tag=NDY25_01525;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=UUF02769.1;transl_table=11 CP098604.1 Genbank gene 341077 343311 . - . ID=gene-NDY25_01530;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=NDY25_01530 CP098604.1 Protein Homology CDS 341077 343311 . - 0 ID=cds-UUF02770.1;Parent=gene-NDY25_01530;Dbxref=NCBI_GP:UUF02770.1;Name=UUF02770.1;Ontology_term=GO:0006120,GO:0050136;gbkey=CDS;gene=nuoG;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347938.1;locus_tag=NDY25_01530;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=UUF02770.1;transl_table=11 CP098604.1 Genbank gene 343308 344642 . - . ID=gene-NDY25_01535;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=NDY25_01535 CP098604.1 Protein Homology CDS 343308 344642 . - 0 ID=cds-UUF02771.1;Parent=gene-NDY25_01535;Dbxref=NCBI_GP:UUF02771.1;Name=UUF02771.1;Ontology_term=GO:0050136;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (quinone) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503795.1;locus_tag=NDY25_01535;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=UUF02771.1;transl_table=11 CP098604.1 Genbank gene 344646 345173 . - . ID=gene-NDY25_01540;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=NDY25_01540 CP098604.1 Protein Homology CDS 344646 345173 . - 0 ID=cds-UUF02772.1;Parent=gene-NDY25_01540;Dbxref=NCBI_GP:UUF02772.1;Name=UUF02772.1;gbkey=CDS;gene=nuoE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410460.1;locus_tag=NDY25_01540;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=UUF02772.1;transl_table=11 CP098604.1 Genbank gene 345170 346477 . - . ID=gene-NDY25_01545;Name=NDY25_01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01545 CP098604.1 Protein Homology CDS 345170 346477 . - 0 ID=cds-UUF02773.1;Parent=gene-NDY25_01545;Dbxref=NCBI_GP:UUF02773.1;Name=UUF02773.1;Ontology_term=GO:0016651,GO:0048038,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,quinone binding|0048038||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810223.1;locus_tag=NDY25_01545;product=NADH-quinone oxidoreductase subunit D;protein_id=UUF02773.1;transl_table=11 CP098604.1 Genbank gene 346474 347226 . - . ID=gene-NDY25_01550;Name=NDY25_01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01550 CP098604.1 Protein Homology CDS 346474 347226 . - 0 ID=cds-UUF02774.1;Parent=gene-NDY25_01550;Dbxref=NCBI_GP:UUF02774.1;Name=UUF02774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927494.1;locus_tag=NDY25_01550;product=NADH-quinone oxidoreductase subunit C;protein_id=UUF02774.1;transl_table=11 CP098604.1 Genbank gene 347263 347817 . - . ID=gene-NDY25_01555;Name=NDY25_01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01555 CP098604.1 Protein Homology CDS 347263 347817 . - 0 ID=cds-UUF02775.1;Parent=gene-NDY25_01555;Dbxref=NCBI_GP:UUF02775.1;Name=UUF02775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914280.1;locus_tag=NDY25_01555;product=NADH-quinone oxidoreductase subunit B;protein_id=UUF02775.1;transl_table=11 CP098604.1 Genbank gene 347808 348164 . - . ID=gene-NDY25_01560;Name=NDY25_01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01560 CP098604.1 Protein Homology CDS 347808 348164 . - 0 ID=cds-UUF02776.1;Parent=gene-NDY25_01560;Dbxref=NCBI_GP:UUF02776.1;Name=UUF02776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003467430.1;locus_tag=NDY25_01560;product=NADH-quinone oxidoreductase subunit A;protein_id=UUF02776.1;transl_table=11 CP098604.1 Genbank gene 348271 348355 . - . ID=gene-NDY25_01565;Name=NDY25_01565;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_01565 CP098604.1 tRNAscan-SE tRNA 348271 348355 . - . ID=rna-NDY25_01565;Parent=gene-NDY25_01565;anticodon=(pos:complement(348319..348321));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_01565;product=tRNA-Leu CP098604.1 tRNAscan-SE exon 348271 348355 . - . ID=exon-NDY25_01565-1;Parent=rna-NDY25_01565;anticodon=(pos:complement(348319..348321));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_01565;product=tRNA-Leu CP098604.1 Genbank gene 348405 348878 . - . ID=gene-NDY25_01570;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=NDY25_01570 CP098604.1 Protein Homology CDS 348405 348878 . - 0 ID=cds-UUF02777.1;Parent=gene-NDY25_01570;Dbxref=NCBI_GP:UUF02777.1;Name=UUF02777.1;Ontology_term=GO:0043952,GO:0015450,GO:0005887;gbkey=CDS;gene=secG;go_component=integral component of plasma membrane|0005887||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570967.1;locus_tag=NDY25_01570;product=preprotein translocase subunit SecG;protein_id=UUF02777.1;transl_table=11 CP098604.1 Genbank gene 348912 349667 . - . ID=gene-NDY25_01575;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=NDY25_01575 CP098604.1 Protein Homology CDS 348912 349667 . - 0 ID=cds-UUF02778.1;Parent=gene-NDY25_01575;Dbxref=NCBI_GP:UUF02778.1;Name=UUF02778.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156090.1;locus_tag=NDY25_01575;product=triose-phosphate isomerase;protein_id=UUF02778.1;transl_table=11 CP098604.1 Genbank gene 349780 350580 . + . ID=gene-NDY25_01580;Name=NDY25_01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01580 CP098604.1 Protein Homology CDS 349780 350580 . + 0 ID=cds-UUF02779.1;Parent=gene-NDY25_01580;Dbxref=NCBI_GP:UUF02779.1;Name=UUF02779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008570965.1;locus_tag=NDY25_01580;product=SDR family oxidoreductase;protein_id=UUF02779.1;transl_table=11 CP098604.1 Genbank gene 350653 351081 . - . ID=gene-NDY25_01585;Name=NDY25_01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01585 CP098604.1 Protein Homology CDS 350653 351081 . - 0 ID=cds-UUF02780.1;Parent=gene-NDY25_01585;Dbxref=NCBI_GP:UUF02780.1;Name=UUF02780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810241.1;locus_tag=NDY25_01585;product=group 1 truncated hemoglobin;protein_id=UUF02780.1;transl_table=11 CP098604.1 Genbank gene 351081 351956 . - . ID=gene-NDY25_01590;Name=NDY25_01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01590 CP098604.1 Protein Homology CDS 351081 351956 . - 0 ID=cds-UUF02781.1;Parent=gene-NDY25_01590;Dbxref=NCBI_GP:UUF02781.1;Name=UUF02781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156087.1;locus_tag=NDY25_01590;product=DUF3034 family protein;protein_id=UUF02781.1;transl_table=11 CP098604.1 Genbank gene 351953 354337 . - . ID=gene-NDY25_01595;Name=NDY25_01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01595 CP098604.1 Protein Homology CDS 351953 354337 . - 0 ID=cds-UUF02782.1;Parent=gene-NDY25_01595;Dbxref=NCBI_GP:UUF02782.1;Name=UUF02782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450574.1;locus_tag=NDY25_01595;product=EAL domain-containing protein;protein_id=UUF02782.1;transl_table=11 CP098604.1 Genbank gene 354334 355023 . - . ID=gene-NDY25_01600;Name=NDY25_01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01600 CP098604.1 Protein Homology CDS 354334 355023 . - 0 ID=cds-UUF02783.1;Parent=gene-NDY25_01600;Dbxref=NCBI_GP:UUF02783.1;Name=UUF02783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902986.1;locus_tag=NDY25_01600;product=methylamine utilization protein;protein_id=UUF02783.1;transl_table=11 CP098604.1 Genbank gene 355229 356167 . - . ID=gene-NDY25_01605;Name=NDY25_01605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01605 CP098604.1 Protein Homology CDS 355229 356167 . - 0 ID=cds-UUF02784.1;Parent=gene-NDY25_01605;Dbxref=NCBI_GP:UUF02784.1;Name=UUF02784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485523.1;locus_tag=NDY25_01605;product=isopenicillin N synthase family oxygenase;protein_id=UUF02784.1;transl_table=11 CP098604.1 Genbank gene 356292 357641 . - . ID=gene-NDY25_01610;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=NDY25_01610 CP098604.1 Protein Homology CDS 356292 357641 . - 0 ID=cds-UUF02785.1;Parent=gene-NDY25_01610;Dbxref=NCBI_GP:UUF02785.1;Name=UUF02785.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular transferase activity%2C phosphotransferases|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300396.1;locus_tag=NDY25_01610;product=phosphoglucosamine mutase;protein_id=UUF02785.1;transl_table=11 CP098604.1 Genbank gene 357769 358653 . - . ID=gene-NDY25_01615;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=NDY25_01615 CP098604.1 Protein Homology CDS 357769 358653 . - 0 ID=cds-UUF02786.1;Parent=gene-NDY25_01615;Dbxref=NCBI_GP:UUF02786.1;Name=UUF02786.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810266.1;locus_tag=NDY25_01615;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=UUF02786.1;transl_table=11 CP098604.1 Genbank gene 359034 359840 . - . ID=gene-NDY25_01620;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=NDY25_01620 CP098604.1 Protein Homology CDS 359034 359840 . - 0 ID=cds-UUF02787.1;Parent=gene-NDY25_01620;Dbxref=NCBI_GP:UUF02787.1;Name=UUF02787.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156349.1;locus_tag=NDY25_01620;product=tryptophan synthase subunit alpha;protein_id=UUF02787.1;transl_table=11 CP098604.1 Genbank gene 359879 360088 . - . ID=gene-NDY25_01625;Name=NDY25_01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01625 CP098604.1 GeneMarkS-2+ CDS 359879 360088 . - 0 ID=cds-UUF02788.1;Parent=gene-NDY25_01625;Dbxref=NCBI_GP:UUF02788.1;Name=UUF02788.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_01625;product=hypothetical protein;protein_id=UUF02788.1;transl_table=11 CP098604.1 Genbank gene 360088 361305 . - . ID=gene-NDY25_01630;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=NDY25_01630 CP098604.1 Protein Homology CDS 360088 361305 . - 0 ID=cds-UUF02789.1;Parent=gene-NDY25_01630;Dbxref=NCBI_GP:UUF02789.1;Name=UUF02789.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914297.1;locus_tag=NDY25_01630;product=tryptophan synthase subunit beta;protein_id=UUF02789.1;transl_table=11 CP098604.1 Genbank gene 361414 362343 . + . ID=gene-NDY25_01635;Name=NDY25_01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01635 CP098604.1 Protein Homology CDS 361414 362343 . + 0 ID=cds-UUF02790.1;Parent=gene-NDY25_01635;Dbxref=NCBI_GP:UUF02790.1;Name=UUF02790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162800.1;locus_tag=NDY25_01635;product=LysR family transcriptional regulator;protein_id=UUF02790.1;transl_table=11 CP098604.1 Genbank gene 362515 363183 . - . ID=gene-NDY25_01640;Name=NDY25_01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01640 CP098604.1 Protein Homology CDS 362515 363183 . - 0 ID=cds-UUF02791.1;Parent=gene-NDY25_01640;Dbxref=NCBI_GP:UUF02791.1;Name=UUF02791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159966.1;locus_tag=NDY25_01640;product=phosphoribosylanthranilate isomerase;protein_id=UUF02791.1;transl_table=11 CP098604.1 Genbank gene 363180 363953 . - . ID=gene-NDY25_01645;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=NDY25_01645 CP098604.1 Protein Homology CDS 363180 363953 . - 0 ID=cds-UUF02792.1;Parent=gene-NDY25_01645;Dbxref=NCBI_GP:UUF02792.1;Name=UUF02792.1;Ontology_term=GO:0006400,GO:0009982;gbkey=CDS;gene=truA;go_function=pseudouridine synthase activity|0009982||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304909.1;locus_tag=NDY25_01645;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=UUF02792.1;transl_table=11 CP098604.1 Genbank gene 364126 364533 . - . ID=gene-NDY25_01650;Name=NDY25_01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01650 CP098604.1 Protein Homology CDS 364126 364533 . - 0 ID=cds-UUF02793.1;Parent=gene-NDY25_01650;Dbxref=NCBI_GP:UUF02793.1;Name=UUF02793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379378.1;locus_tag=NDY25_01650;product=VOC family protein;protein_id=UUF02793.1;transl_table=11 CP098604.1 Genbank pseudogene 364530 366455 . - . ID=gene-NDY25_01655;Name=NDY25_01655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01655;pseudo=true CP098604.1 Protein Homology CDS 364530 366455 . - 0 ID=cds-NDY25_01655;Parent=gene-NDY25_01655;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810305.1;locus_tag=NDY25_01655;product=ferrous iron transporter B;pseudo=true;transl_table=11 CP098604.1 Genbank gene 366750 367775 . - . ID=gene-NDY25_01660;Name=NDY25_01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01660 CP098604.1 Protein Homology CDS 366750 367775 . - 0 ID=cds-UUF02794.1;Parent=gene-NDY25_01660;Dbxref=NCBI_GP:UUF02794.1;Name=UUF02794.1;Ontology_term=GO:0008652,GO:0004073,GO:0016620,GO:0051287;gbkey=CDS;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NAD binding|0051287||IEA;go_process=cellular amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437949.1;locus_tag=NDY25_01660;product=aspartate-semialdehyde dehydrogenase;protein_id=UUF02794.1;transl_table=11 CP098604.1 Genbank gene 367862 368950 . - . ID=gene-NDY25_01665;Name=NDY25_01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01665 CP098604.1 Protein Homology CDS 367862 368950 . - 0 ID=cds-UUF02795.1;Parent=gene-NDY25_01665;Dbxref=NCBI_GP:UUF02795.1;Name=UUF02795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379384.1;locus_tag=NDY25_01665;product=D-glycerate dehydrogenase;protein_id=UUF02795.1;transl_table=11 CP098604.1 Genbank gene 368943 370046 . - . ID=gene-NDY25_01670;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=NDY25_01670 CP098604.1 Protein Homology CDS 368943 370046 . - 0 ID=cds-UUF02796.1;Parent=gene-NDY25_01670;Dbxref=NCBI_GP:UUF02796.1;Name=UUF02796.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914304.1;locus_tag=NDY25_01670;product=chorismate synthase;protein_id=UUF02796.1;transl_table=11 CP098604.1 Genbank gene 370036 370524 . - . ID=gene-NDY25_01675;Name=NDY25_01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01675 CP098604.1 Protein Homology CDS 370036 370524 . - 0 ID=cds-UUF02797.1;Parent=gene-NDY25_01675;Dbxref=NCBI_GP:UUF02797.1;Name=UUF02797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237518.1;locus_tag=NDY25_01675;product=hypothetical protein;protein_id=UUF02797.1;transl_table=11 CP098604.1 Genbank gene 370514 371440 . - . ID=gene-NDY25_01680;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=NDY25_01680 CP098604.1 Protein Homology CDS 370514 371440 . - 0 ID=cds-UUF02798.1;Parent=gene-NDY25_01680;Dbxref=NCBI_GP:UUF02798.1;Name=UUF02798.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927455.1;locus_tag=NDY25_01680;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=UUF02798.1;transl_table=11 CP098604.1 Genbank gene 371521 372171 . + . ID=gene-NDY25_01685;Name=NDY25_01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01685 CP098604.1 Protein Homology CDS 371521 372171 . + 0 ID=cds-UUF02799.1;Parent=gene-NDY25_01685;Dbxref=NCBI_GP:UUF02799.1;Name=UUF02799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302734.1;locus_tag=NDY25_01685;product=SCO family protein;protein_id=UUF02799.1;transl_table=11 CP098604.1 Genbank gene 372168 373016 . + . ID=gene-NDY25_01690;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=NDY25_01690 CP098604.1 Protein Homology CDS 372168 373016 . + 0 ID=cds-UUF02800.1;Parent=gene-NDY25_01690;Dbxref=NCBI_GP:UUF02800.1;Name=UUF02800.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437944.1;locus_tag=NDY25_01690;product=archaetidylserine decarboxylase;protein_id=UUF02800.1;transl_table=11 CP098604.1 Genbank gene 373517 375100 . - . ID=gene-NDY25_01695;Name=NDY25_01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01695 CP098604.1 Protein Homology CDS 373517 375100 . - 0 ID=cds-UUF02801.1;Parent=gene-NDY25_01695;Dbxref=NCBI_GP:UUF02801.1;Name=UUF02801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914309.1;locus_tag=NDY25_01695;product=transglycosylase SLT domain-containing protein;protein_id=UUF02801.1;transl_table=11 CP098604.1 Genbank gene 375394 376938 . + . ID=gene-NDY25_01700;Name=NDY25_01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01700 CP098604.1 Protein Homology CDS 375394 376938 . + 0 ID=cds-UUF02802.1;Parent=gene-NDY25_01700;Dbxref=NCBI_GP:UUF02802.1;Name=UUF02802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347958.1;locus_tag=NDY25_01700;product=DUF853 domain-containing protein;protein_id=UUF02802.1;transl_table=11 CP098604.1 Genbank gene 376935 377462 . + . ID=gene-NDY25_01705;Name=NDY25_01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01705 CP098604.1 Protein Homology CDS 376935 377462 . + 0 ID=cds-UUF02803.1;Parent=gene-NDY25_01705;Dbxref=NCBI_GP:UUF02803.1;Name=UUF02803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437940.1;locus_tag=NDY25_01705;product=hypothetical protein;protein_id=UUF02803.1;transl_table=11 CP098604.1 Genbank gene 377700 378299 . - . ID=gene-NDY25_01710;Name=nudK;gbkey=Gene;gene=nudK;gene_biotype=protein_coding;locus_tag=NDY25_01710 CP098604.1 Protein Homology CDS 377700 378299 . - 0 ID=cds-UUF02804.1;Parent=gene-NDY25_01710;Dbxref=NCBI_GP:UUF02804.1;Name=UUF02804.1;Ontology_term=GO:0016818,GO:0046872;gbkey=CDS;gene=nudK;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903706.1;locus_tag=NDY25_01710;product=GDP-mannose pyrophosphatase NudK;protein_id=UUF02804.1;transl_table=11 CP098604.1 Genbank gene 378916 380190 . + . ID=gene-NDY25_01715;Name=NDY25_01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01715 CP098604.1 Protein Homology CDS 378916 380190 . + 0 ID=cds-UUF02805.1;Parent=gene-NDY25_01715;Dbxref=NCBI_GP:UUF02805.1;Name=UUF02805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991301.1;locus_tag=NDY25_01715;product=hypothetical protein;protein_id=UUF02805.1;transl_table=11 CP098604.1 Genbank gene 380778 382244 . - . ID=gene-NDY25_01720;Name=NDY25_01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01720 CP098604.1 Protein Homology CDS 380778 382244 . - 0 ID=cds-UUF02806.1;Parent=gene-NDY25_01720;Dbxref=NCBI_GP:UUF02806.1;Name=UUF02806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156366.1;locus_tag=NDY25_01720;product=rhomboid family intramembrane serine protease;protein_id=UUF02806.1;transl_table=11 CP098604.1 Genbank pseudogene 382349 382854 . + . ID=gene-NDY25_01725;Name=greB;gbkey=Gene;gene=greB;gene_biotype=pseudogene;locus_tag=NDY25_01725;pseudo=true CP098604.1 Protein Homology CDS 382349 382854 . + 0 ID=cds-NDY25_01725;Parent=gene-NDY25_01725;Note=frameshifted;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greB;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription%2C elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409076.1;locus_tag=NDY25_01725;product=transcription elongation factor GreB;pseudo=true;transl_table=11 CP098604.1 Genbank gene 382972 384345 . - . ID=gene-NDY25_01730;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=NDY25_01730 CP098604.1 Protein Homology CDS 382972 384345 . - 0 ID=cds-UUF02807.1;Parent=gene-NDY25_01730;Dbxref=NCBI_GP:UUF02807.1;Name=UUF02807.1;Ontology_term=GO:0018339,GO:0008172,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=rimO;go_function=S-methyltransferase activity|0008172||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid|0018339||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037694.1;locus_tag=NDY25_01730;product=30S ribosomal protein S12 methylthiotransferase RimO;protein_id=UUF02807.1;transl_table=11 CP098604.1 Genbank gene 384529 385191 . + . ID=gene-NDY25_01735;Name=NDY25_01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01735 CP098604.1 Protein Homology CDS 384529 385191 . + 0 ID=cds-UUF02808.1;Parent=gene-NDY25_01735;Dbxref=NCBI_GP:UUF02808.1;Name=UUF02808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302061.1;locus_tag=NDY25_01735;product=dienelactone hydrolase family protein;protein_id=UUF02808.1;transl_table=11 CP098604.1 Genbank gene 385188 385640 . + . ID=gene-NDY25_01740;Name=NDY25_01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01740 CP098604.1 Protein Homology CDS 385188 385640 . + 0 ID=cds-UUF02809.1;Parent=gene-NDY25_01740;Dbxref=NCBI_GP:UUF02809.1;Name=UUF02809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037697.1;locus_tag=NDY25_01740;product=HIT family protein;protein_id=UUF02809.1;transl_table=11 CP098604.1 Genbank gene 385668 385835 . + . ID=gene-NDY25_01745;Name=NDY25_01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01745 CP098604.1 Protein Homology CDS 385668 385835 . + 0 ID=cds-UUF02810.1;Parent=gene-NDY25_01745;Dbxref=NCBI_GP:UUF02810.1;Name=UUF02810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994260.1;locus_tag=NDY25_01745;product=DUF5668 domain-containing protein;protein_id=UUF02810.1;transl_table=11 CP098604.1 Genbank pseudogene 386183 386350 . + . ID=gene-NDY25_01750;Name=NDY25_01750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01750;pseudo=true CP098604.1 Protein Homology CDS 386183 386350 . + 0 ID=cds-NDY25_01750;Parent=gene-NDY25_01750;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486896.1;locus_tag=NDY25_01750;product=DUF5668 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 386398 386967 . - . ID=gene-NDY25_01755;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=NDY25_01755 CP098604.1 Protein Homology CDS 386398 386967 . - 0 ID=cds-UUF02811.1;Parent=gene-NDY25_01755;Dbxref=NCBI_GP:UUF02811.1;Name=UUF02811.1;Ontology_term=GO:0009394,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=2'-deoxyribonucleotide metabolic process|0009394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912996.1;locus_tag=NDY25_01755;product=dCTP deaminase;protein_id=UUF02811.1;transl_table=11 CP098604.1 Genbank gene 387064 387915 . - . ID=gene-NDY25_01760;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=NDY25_01760 CP098604.1 Protein Homology CDS 387064 387915 . - 0 ID=cds-UUF02812.1;Parent=gene-NDY25_01760;Dbxref=NCBI_GP:UUF02812.1;Name=UUF02812.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156372.1;locus_tag=NDY25_01760;product=iron-sulfur cluster carrier protein ApbC;protein_id=UUF02812.1;transl_table=11 CP098604.1 Genbank gene 388253 391243 . + . ID=gene-NDY25_01765;Name=NDY25_01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01765 CP098604.1 Protein Homology CDS 388253 391243 . + 0 ID=cds-UUF02813.1;Parent=gene-NDY25_01765;Dbxref=NCBI_GP:UUF02813.1;Name=UUF02813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366729.1;locus_tag=NDY25_01765;product=TonB-dependent receptor;protein_id=UUF02813.1;transl_table=11 CP098604.1 Genbank gene 391619 394693 . + . ID=gene-NDY25_01770;Name=NDY25_01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01770 CP098604.1 Protein Homology CDS 391619 394693 . + 0 ID=cds-UUF02814.1;Parent=gene-NDY25_01770;Dbxref=NCBI_GP:UUF02814.1;Name=UUF02814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090548.1;locus_tag=NDY25_01770;product=TonB-dependent receptor;protein_id=UUF02814.1;transl_table=11 CP098604.1 Genbank gene 394806 396398 . - . ID=gene-NDY25_01775;Name=NDY25_01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01775 CP098604.1 Protein Homology CDS 394806 396398 . - 0 ID=cds-UUF02815.1;Parent=gene-NDY25_01775;Dbxref=NCBI_GP:UUF02815.1;Name=UUF02815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452358.1;locus_tag=NDY25_01775;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=UUF02815.1;transl_table=11 CP098604.1 Genbank gene 396769 398871 . + . ID=gene-NDY25_01780;Name=NDY25_01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01780 CP098604.1 Protein Homology CDS 396769 398871 . + 0 ID=cds-UUF04493.1;Parent=gene-NDY25_01780;Dbxref=NCBI_GP:UUF04493.1;Name=UUF04493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486886.1;locus_tag=NDY25_01780;product=peptidase;protein_id=UUF04493.1;transl_table=11 CP098604.1 Genbank gene 399196 401292 . + . ID=gene-NDY25_01785;Name=NDY25_01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01785 CP098604.1 Protein Homology CDS 399196 401292 . + 0 ID=cds-UUF02816.1;Parent=gene-NDY25_01785;Dbxref=NCBI_GP:UUF02816.1;Name=UUF02816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304384.1;locus_tag=NDY25_01785;product=M13 family metallopeptidase;protein_id=UUF02816.1;transl_table=11 CP098604.1 Genbank gene 401477 403489 . + . ID=gene-NDY25_01790;Name=NDY25_01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01790 CP098604.1 Protein Homology CDS 401477 403489 . + 0 ID=cds-UUF02817.1;Parent=gene-NDY25_01790;Dbxref=NCBI_GP:UUF02817.1;Name=UUF02817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969573.1;locus_tag=NDY25_01790;product=M13 family metallopeptidase;protein_id=UUF02817.1;transl_table=11 CP098604.1 Genbank gene 403719 404405 . - . ID=gene-NDY25_01795;Name=NDY25_01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01795 CP098604.1 Protein Homology CDS 403719 404405 . - 0 ID=cds-UUF02818.1;Parent=gene-NDY25_01795;Dbxref=NCBI_GP:UUF02818.1;Name=UUF02818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169516.1;locus_tag=NDY25_01795;product=rhomboid family intramembrane serine protease;protein_id=UUF02818.1;transl_table=11 CP098604.1 Genbank gene 404446 404853 . - . ID=gene-NDY25_01800;Name=NDY25_01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01800 CP098604.1 Protein Homology CDS 404446 404853 . - 0 ID=cds-UUF02819.1;Parent=gene-NDY25_01800;Dbxref=NCBI_GP:UUF02819.1;Name=UUF02819.1;Ontology_term=GO:0006281,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051802.1;locus_tag=NDY25_01800;product=MGMT family protein;protein_id=UUF02819.1;transl_table=11 CP098604.1 Genbank gene 405129 406499 . - . ID=gene-NDY25_01805;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=protein_coding;locus_tag=NDY25_01805 CP098604.1 Protein Homology CDS 405129 406499 . - 0 ID=cds-UUF02820.1;Parent=gene-NDY25_01805;Dbxref=NCBI_GP:UUF02820.1;Name=UUF02820.1;Ontology_term=GO:0006749,GO:0045454,GO:0004362,GO:0050660,GO:0050661;gbkey=CDS;gene=gorA;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=glutathione metabolic process|0006749||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486876.1;locus_tag=NDY25_01805;product=glutathione-disulfide reductase;protein_id=UUF02820.1;transl_table=11 CP098604.1 Genbank pseudogene 406496 406636 . - . ID=gene-NDY25_01810;Name=NDY25_01810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01810;pseudo=true CP098604.1 Protein Homology CDS 406496 406636 . - 0 ID=cds-NDY25_01810;Parent=gene-NDY25_01810;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848650.1;locus_tag=NDY25_01810;product=amino acid dehydrogenase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 406842 408086 . - . ID=gene-NDY25_01815;Name=NDY25_01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01815 CP098604.1 Protein Homology CDS 406842 408086 . - 0 ID=cds-UUF02821.1;Parent=gene-NDY25_01815;Dbxref=NCBI_GP:UUF02821.1;Name=UUF02821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449969.1;locus_tag=NDY25_01815;product=DUF418 domain-containing protein;protein_id=UUF02821.1;transl_table=11 CP098604.1 Genbank gene 408310 408789 . - . ID=gene-NDY25_01820;Name=NDY25_01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01820 CP098604.1 Protein Homology CDS 408310 408789 . - 0 ID=cds-UUF02822.1;Parent=gene-NDY25_01820;Dbxref=NCBI_GP:UUF02822.1;Name=UUF02822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903985.1;locus_tag=NDY25_01820;product=peptidylprolyl isomerase;protein_id=UUF02822.1;transl_table=11 CP098604.1 Genbank pseudogene 408788 409445 . + . ID=gene-NDY25_01825;Name=NDY25_01825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01825;pseudo=true CP098604.1 Protein Homology CDS 408788 409445 . + 0 ID=cds-NDY25_01825;Parent=gene-NDY25_01825;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970776.1;locus_tag=NDY25_01825;product=C40 family peptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 409555 410304 . + . ID=gene-NDY25_01830;Name=NDY25_01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01830 CP098604.1 Protein Homology CDS 409555 410304 . + 0 ID=cds-UUF02823.1;Parent=gene-NDY25_01830;Dbxref=NCBI_GP:UUF02823.1;Name=UUF02823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437923.1;locus_tag=NDY25_01830;product=C40 family peptidase;protein_id=UUF02823.1;transl_table=11 CP098604.1 Genbank gene 411096 411611 . + . ID=gene-NDY25_01835;Name=NDY25_01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01835 CP098604.1 Protein Homology CDS 411096 411611 . + 0 ID=cds-UUF02824.1;Parent=gene-NDY25_01835;Dbxref=NCBI_GP:UUF02824.1;Name=UUF02824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994290.1;locus_tag=NDY25_01835;product=DUF4956 domain-containing protein;protein_id=UUF02824.1;transl_table=11 CP098604.1 Genbank gene 411748 412527 . + . ID=gene-NDY25_01840;Name=NDY25_01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01840 CP098604.1 Protein Homology CDS 411748 412527 . + 0 ID=cds-UUF02825.1;Parent=gene-NDY25_01840;Dbxref=NCBI_GP:UUF02825.1;Name=UUF02825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994291.1;locus_tag=NDY25_01840;product=polyphosphate polymerase domain-containing protein;protein_id=UUF02825.1;transl_table=11 CP098604.1 Genbank gene 412595 413572 . + . ID=gene-NDY25_01845;Name=NDY25_01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01845 CP098604.1 Protein Homology CDS 412595 413572 . + 0 ID=cds-UUF02826.1;Parent=gene-NDY25_01845;Dbxref=NCBI_GP:UUF02826.1;Name=UUF02826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994292.1;locus_tag=NDY25_01845;product=esterase-like activity of phytase family protein;protein_id=UUF02826.1;transl_table=11 CP098604.1 Genbank gene 413604 414737 . + . ID=gene-NDY25_01850;Name=NDY25_01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01850 CP098604.1 Protein Homology CDS 413604 414737 . + 0 ID=cds-UUF02827.1;Parent=gene-NDY25_01850;Dbxref=NCBI_GP:UUF02827.1;Name=UUF02827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269626.1;locus_tag=NDY25_01850;product=OprO/OprP family phosphate-selective porin;protein_id=UUF02827.1;transl_table=11 CP098604.1 Genbank gene 414768 416126 . + . ID=gene-NDY25_01855;Name=NDY25_01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01855 CP098604.1 Protein Homology CDS 414768 416126 . + 0 ID=cds-UUF02828.1;Parent=gene-NDY25_01855;Dbxref=NCBI_GP:UUF02828.1;Name=UUF02828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437917.1;locus_tag=NDY25_01855;product=sigma-54 dependent transcriptional regulator;protein_id=UUF02828.1;transl_table=11 CP098604.1 Genbank gene 416188 418125 . + . ID=gene-NDY25_01860;Name=NDY25_01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01860 CP098604.1 Protein Homology CDS 416188 418125 . + 0 ID=cds-UUF02829.1;Parent=gene-NDY25_01860;Dbxref=NCBI_GP:UUF02829.1;Name=UUF02829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237496.1;locus_tag=NDY25_01860;product=ATP-binding protein;protein_id=UUF02829.1;transl_table=11 CP098604.1 Genbank gene 418251 418742 . - . ID=gene-NDY25_01865;Name=NDY25_01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01865 CP098604.1 Protein Homology CDS 418251 418742 . - 0 ID=cds-UUF02830.1;Parent=gene-NDY25_01865;Dbxref=NCBI_GP:UUF02830.1;Name=UUF02830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449965.1;locus_tag=NDY25_01865;product=acyl-CoA thioesterase;protein_id=UUF02830.1;transl_table=11 CP098604.1 Genbank gene 418832 419668 . - . ID=gene-NDY25_01870;Name=NDY25_01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01870 CP098604.1 Protein Homology CDS 418832 419668 . - 0 ID=cds-UUF02831.1;Parent=gene-NDY25_01870;Dbxref=NCBI_GP:UUF02831.1;Name=UUF02831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919432.1;locus_tag=NDY25_01870;product=methyltransferase domain-containing protein;protein_id=UUF02831.1;transl_table=11 CP098604.1 Genbank gene 419682 421022 . - . ID=gene-NDY25_01875;Name=NDY25_01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01875 CP098604.1 Protein Homology CDS 419682 421022 . - 0 ID=cds-UUF02832.1;Parent=gene-NDY25_01875;Dbxref=NCBI_GP:UUF02832.1;Name=UUF02832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037726.1;locus_tag=NDY25_01875;product=dicarboxylate/amino acid:cation symporter;protein_id=UUF02832.1;transl_table=11 CP098604.1 Genbank gene 421165 422871 . + . ID=gene-NDY25_01880;Name=NDY25_01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01880 CP098604.1 Protein Homology CDS 421165 422871 . + 0 ID=cds-UUF02833.1;Parent=gene-NDY25_01880;Dbxref=NCBI_GP:UUF02833.1;Name=UUF02833.1;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508281.1;locus_tag=NDY25_01880;product=alkaline phosphatase;protein_id=UUF02833.1;transl_table=11 CP098604.1 Genbank gene 422963 424258 . + . ID=gene-NDY25_01885;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=NDY25_01885 CP098604.1 Protein Homology CDS 422963 424258 . + 0 ID=cds-UUF02834.1;Parent=gene-NDY25_01885;Dbxref=NCBI_GP:UUF02834.1;Name=UUF02834.1;Ontology_term=GO:0006400,GO:0016879;gbkey=CDS;gene=tilS;go_function=ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449961.1;locus_tag=NDY25_01885;product=tRNA lysidine(34) synthetase TilS;protein_id=UUF02834.1;transl_table=11 CP098604.1 Genbank gene 424290 424553 . + . ID=gene-NDY25_01890;Name=NDY25_01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01890 CP098604.1 Protein Homology CDS 424290 424553 . + 0 ID=cds-UUF02835.1;Parent=gene-NDY25_01890;Dbxref=NCBI_GP:UUF02835.1;Name=UUF02835.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037729.1;locus_tag=NDY25_01890;product=exodeoxyribonuclease VII small subunit;protein_id=UUF02835.1;transl_table=11 CP098604.1 Genbank gene 424555 425430 . + . ID=gene-NDY25_01895;Name=NDY25_01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01895 CP098604.1 Protein Homology CDS 424555 425430 . + 0 ID=cds-UUF02836.1;Parent=gene-NDY25_01895;Dbxref=NCBI_GP:UUF02836.1;Name=UUF02836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174296.1;locus_tag=NDY25_01895;product=polyprenyl synthetase family protein;protein_id=UUF02836.1;transl_table=11 CP098604.1 Genbank pseudogene 425863 426961 . + . ID=gene-NDY25_01900;Name=NDY25_01900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_01900;pseudo=true CP098604.1 Protein Homology CDS 425863 426961 . + 0 ID=cds-NDY25_01900;Parent=gene-NDY25_01900;Note=frameshifted%3B internal stop;Ontology_term=GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508287.1;locus_tag=NDY25_01900;product=M35 family metallo-endopeptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 427033 427422 . - . ID=gene-NDY25_01905;Name=NDY25_01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01905 CP098604.1 Protein Homology CDS 427033 427422 . - 0 ID=cds-UUF02837.1;Parent=gene-NDY25_01905;Dbxref=NCBI_GP:UUF02837.1;Name=UUF02837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964777.1;locus_tag=NDY25_01905;product=DUF4870 domain-containing protein;protein_id=UUF02837.1;transl_table=11 CP098604.1 Genbank gene 427566 428933 . - . ID=gene-NDY25_01910;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=NDY25_01910 CP098604.1 Protein Homology CDS 427566 428933 . - 0 ID=cds-UUF02838.1;Parent=gene-NDY25_01910;Dbxref=NCBI_GP:UUF02838.1;Name=UUF02838.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449956.1;locus_tag=NDY25_01910;product=metalloprotease PmbA;protein_id=UUF02838.1;transl_table=11 CP098604.1 Genbank gene 429079 429684 . + . ID=gene-NDY25_01915;Name=NDY25_01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01915 CP098604.1 Protein Homology CDS 429079 429684 . + 0 ID=cds-UUF02839.1;Parent=gene-NDY25_01915;Dbxref=NCBI_GP:UUF02839.1;Name=UUF02839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037735.1;locus_tag=NDY25_01915;product=ribosome-associated protein;protein_id=UUF02839.1;transl_table=11 CP098604.1 Genbank gene 429767 431212 . - . ID=gene-NDY25_01920;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=NDY25_01920 CP098604.1 Protein Homology CDS 429767 431212 . - 0 ID=cds-UUF02840.1;Parent=gene-NDY25_01920;Dbxref=NCBI_GP:UUF02840.1;Name=UUF02840.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972594.1;locus_tag=NDY25_01920;product=metalloprotease TldD;protein_id=UUF02840.1;transl_table=11 CP098604.1 Genbank gene 431312 432079 . + . ID=gene-NDY25_01925;Name=NDY25_01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01925 CP098604.1 Protein Homology CDS 431312 432079 . + 0 ID=cds-UUF02841.1;Parent=gene-NDY25_01925;Dbxref=NCBI_GP:UUF02841.1;Name=UUF02841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449953.1;locus_tag=NDY25_01925;product=DUF6065 family protein;protein_id=UUF02841.1;transl_table=11 CP098604.1 Genbank gene 432293 436216 . - . ID=gene-NDY25_01930;Name=NDY25_01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01930 CP098604.1 Protein Homology CDS 432293 436216 . - 0 ID=cds-UUF02842.1;Parent=gene-NDY25_01930;Dbxref=NCBI_GP:UUF02842.1;Name=UUF02842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449952.1;locus_tag=NDY25_01930;product=TIGR02099 family protein;protein_id=UUF02842.1;transl_table=11 CP098604.1 Genbank gene 436386 437885 . - . ID=gene-NDY25_01935;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=NDY25_01935 CP098604.1 Protein Homology CDS 436386 437885 . - 0 ID=cds-UUF02843.1;Parent=gene-NDY25_01935;Dbxref=NCBI_GP:UUF02843.1;Name=UUF02843.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,ribonuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802933.1;locus_tag=NDY25_01935;product=ribonuclease G;protein_id=UUF02843.1;transl_table=11 CP098604.1 Genbank gene 437885 438457 . - . ID=gene-NDY25_01940;Name=NDY25_01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01940 CP098604.1 Protein Homology CDS 437885 438457 . - 0 ID=cds-UUF02844.1;Parent=gene-NDY25_01940;Dbxref=NCBI_GP:UUF02844.1;Name=UUF02844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117854.1;locus_tag=NDY25_01940;product=Maf-like protein;protein_id=UUF02844.1;transl_table=11 CP098604.1 Genbank gene 438580 439314 . + . ID=gene-NDY25_01945;Name=NDY25_01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01945 CP098604.1 Protein Homology CDS 438580 439314 . + 0 ID=cds-UUF02845.1;Parent=gene-NDY25_01945;Dbxref=NCBI_GP:UUF02845.1;Name=UUF02845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302808.1;locus_tag=NDY25_01945;product=SIMPL domain-containing protein;protein_id=UUF02845.1;transl_table=11 CP098604.1 Genbank gene 439622 440305 . + . ID=gene-NDY25_01950;Name=NDY25_01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01950 CP098604.1 Protein Homology CDS 439622 440305 . + 0 ID=cds-UUF02846.1;Parent=gene-NDY25_01950;Dbxref=NCBI_GP:UUF02846.1;Name=UUF02846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486827.1;locus_tag=NDY25_01950;product=energy transducer TonB;protein_id=UUF02846.1;transl_table=11 CP098604.1 Genbank gene 440557 441027 . - . ID=gene-NDY25_01955;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=NDY25_01955 CP098604.1 Protein Homology CDS 440557 441027 . - 0 ID=cds-UUF02847.1;Parent=gene-NDY25_01955;Dbxref=NCBI_GP:UUF02847.1;Name=UUF02847.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301047.1;locus_tag=NDY25_01955;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=UUF02847.1;transl_table=11 CP098604.1 Genbank gene 441149 442690 . + . ID=gene-NDY25_01960;Name=NDY25_01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01960 CP098604.1 Protein Homology CDS 441149 442690 . + 0 ID=cds-UUF02848.1;Parent=gene-NDY25_01960;Dbxref=NCBI_GP:UUF02848.1;Name=UUF02848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005933077.1;locus_tag=NDY25_01960;product=DUF839 domain-containing protein;protein_id=UUF02848.1;transl_table=11 CP098604.1 Genbank gene 442960 444075 . - . ID=gene-NDY25_01965;Name=NDY25_01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01965 CP098604.1 Protein Homology CDS 442960 444075 . - 0 ID=cds-UUF02849.1;Parent=gene-NDY25_01965;Dbxref=NCBI_GP:UUF02849.1;Name=UUF02849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449945.1;locus_tag=NDY25_01965;product=J domain-containing protein;protein_id=UUF02849.1;transl_table=11 CP098604.1 Genbank gene 444088 444498 . - . ID=gene-NDY25_01970;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=NDY25_01970 CP098604.1 Protein Homology CDS 444088 444498 . - 0 ID=cds-UUF02850.1;Parent=gene-NDY25_01970;Dbxref=NCBI_GP:UUF02850.1;Name=UUF02850.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903759.1;locus_tag=NDY25_01970;product=ribosome silencing factor;protein_id=UUF02850.1;transl_table=11 CP098604.1 Genbank gene 444556 445287 . - . ID=gene-NDY25_01975;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=NDY25_01975 CP098604.1 Protein Homology CDS 444556 445287 . - 0 ID=cds-UUF04494.1;Parent=gene-NDY25_01975;Dbxref=NCBI_GP:UUF04494.1;Name=UUF04494.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113885.1;locus_tag=NDY25_01975;product=nicotinate-nucleotide adenylyltransferase;protein_id=UUF04494.1;transl_table=11 CP098604.1 Genbank gene 445395 446423 . - . ID=gene-NDY25_01980;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=NDY25_01980 CP098604.1 Protein Homology CDS 445395 446423 . - 0 ID=cds-UUF02851.1;Parent=gene-NDY25_01980;Dbxref=NCBI_GP:UUF02851.1;Name=UUF02851.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=holA;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116404.1;locus_tag=NDY25_01980;product=DNA polymerase III subunit delta;protein_id=UUF02851.1;transl_table=11 CP098604.1 Genbank gene 446445 447080 . - . ID=gene-NDY25_01985;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=NDY25_01985 CP098604.1 Protein Homology CDS 446445 447080 . - 0 ID=cds-UUF02852.1;Parent=gene-NDY25_01985;Dbxref=NCBI_GP:UUF02852.1;Name=UUF02852.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037748.1;locus_tag=NDY25_01985;product=LPS assembly lipoprotein LptE;protein_id=UUF02852.1;transl_table=11 CP098604.1 Genbank gene 447366 450008 . - . ID=gene-NDY25_01990;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=NDY25_01990 CP098604.1 Protein Homology CDS 447366 450008 . - 0 ID=cds-UUF02853.1;Parent=gene-NDY25_01990;Dbxref=NCBI_GP:UUF02853.1;Name=UUF02853.1;Ontology_term=GO:0006429,GO:0004823,GO:0005737;gbkey=CDS;gene=leuS;go_component=cytoplasm|0005737||IEA;go_function=leucine-tRNA ligase activity|0004823||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972619.1;locus_tag=NDY25_01990;product=leucine--tRNA ligase;protein_id=UUF02853.1;transl_table=11 CP098604.1 Genbank gene 450081 450692 . - . ID=gene-NDY25_01995;Name=NDY25_01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_01995 CP098604.1 Protein Homology CDS 450081 450692 . - 0 ID=cds-UUF02854.1;Parent=gene-NDY25_01995;Dbxref=NCBI_GP:UUF02854.1;Name=UUF02854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449939.1;locus_tag=NDY25_01995;product=DUF998 domain-containing protein;protein_id=UUF02854.1;transl_table=11 CP098604.1 Genbank gene 450969 451826 . + . ID=gene-NDY25_02000;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=NDY25_02000 CP098604.1 Protein Homology CDS 450969 451826 . + 0 ID=cds-UUF02855.1;Parent=gene-NDY25_02000;Dbxref=NCBI_GP:UUF02855.1;Name=UUF02855.1;Ontology_term=GO:0015036,GO:0005737;gbkey=CDS;gene=trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919399.1;locus_tag=NDY25_02000;product=thioredoxin;protein_id=UUF02855.1;transl_table=11 CP098604.1 Genbank gene 452158 452607 . + . ID=gene-NDY25_02005;Name=NDY25_02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02005 CP098604.1 Protein Homology CDS 452158 452607 . + 0 ID=cds-UUF02856.1;Parent=gene-NDY25_02005;Dbxref=NCBI_GP:UUF02856.1;Name=UUF02856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304338.1;locus_tag=NDY25_02005;product=DUF4442 domain-containing protein;protein_id=UUF02856.1;transl_table=11 CP098604.1 Genbank gene 452779 453018 . + . ID=gene-NDY25_02010;Name=NDY25_02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02010 CP098604.1 Protein Homology CDS 452779 453018 . + 0 ID=cds-UUF02857.1;Parent=gene-NDY25_02010;Dbxref=NCBI_GP:UUF02857.1;Name=UUF02857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051827.1;locus_tag=NDY25_02010;product=DUF378 domain-containing protein;protein_id=UUF02857.1;transl_table=11 CP098604.1 Genbank gene 453210 454115 . + . ID=gene-NDY25_02015;Name=NDY25_02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02015 CP098604.1 Protein Homology CDS 453210 454115 . + 0 ID=cds-UUF02858.1;Parent=gene-NDY25_02015;Dbxref=NCBI_GP:UUF02858.1;Name=UUF02858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377519.1;locus_tag=NDY25_02015;product=peptidylprolyl isomerase;protein_id=UUF02858.1;transl_table=11 CP098604.1 Genbank gene 454179 455066 . - . ID=gene-NDY25_02020;Name=NDY25_02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02020 CP098604.1 Protein Homology CDS 454179 455066 . - 0 ID=cds-UUF02859.1;Parent=gene-NDY25_02020;Dbxref=NCBI_GP:UUF02859.1;Name=UUF02859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969434.1;locus_tag=NDY25_02020;product=DMT family transporter;protein_id=UUF02859.1;transl_table=11 CP098604.1 Genbank gene 455237 456229 . + . ID=gene-NDY25_02025;Name=NDY25_02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02025 CP098604.1 Protein Homology CDS 455237 456229 . + 0 ID=cds-UUF02860.1;Parent=gene-NDY25_02025;Dbxref=NCBI_GP:UUF02860.1;Name=UUF02860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157136.1;locus_tag=NDY25_02025;product=LysR substrate-binding domain-containing protein;protein_id=UUF02860.1;transl_table=11 CP098604.1 Genbank gene 456605 456898 . + . ID=gene-NDY25_02030;Name=NDY25_02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02030 CP098604.1 Protein Homology CDS 456605 456898 . + 0 ID=cds-UUF02861.1;Parent=gene-NDY25_02030;Dbxref=NCBI_GP:UUF02861.1;Name=UUF02861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157132.1;locus_tag=NDY25_02030;product=hypothetical protein;protein_id=UUF02861.1;transl_table=11 CP098604.1 Genbank gene 457122 457928 . - . ID=gene-NDY25_02035;Name=NDY25_02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02035 CP098604.1 Protein Homology CDS 457122 457928 . - 0 ID=cds-UUF02862.1;Parent=gene-NDY25_02035;Dbxref=NCBI_GP:UUF02862.1;Name=UUF02862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912913.1;locus_tag=NDY25_02035;product=DUF4349 domain-containing protein;protein_id=UUF02862.1;transl_table=11 CP098604.1 Genbank gene 457925 458281 . - . ID=gene-NDY25_02040;Name=NDY25_02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02040 CP098604.1 Protein Homology CDS 457925 458281 . - 0 ID=cds-UUF02863.1;Parent=gene-NDY25_02040;Dbxref=NCBI_GP:UUF02863.1;Name=UUF02863.1;Ontology_term=GO:0016846;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377506.1;locus_tag=NDY25_02040;product=GFA family protein;protein_id=UUF02863.1;transl_table=11 CP098604.1 Genbank gene 458380 460185 . + . ID=gene-NDY25_02045;Name=NDY25_02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02045 CP098604.1 Protein Homology CDS 458380 460185 . + 0 ID=cds-UUF02864.1;Parent=gene-NDY25_02045;Dbxref=NCBI_GP:UUF02864.1;Name=UUF02864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366861.1;locus_tag=NDY25_02045;product=DUF885 domain-containing protein;protein_id=UUF02864.1;transl_table=11 CP098604.1 Genbank gene 460578 462410 . - . ID=gene-NDY25_02050;Name=NDY25_02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02050 CP098604.1 Protein Homology CDS 460578 462410 . - 0 ID=cds-UUF02865.1;Parent=gene-NDY25_02050;Dbxref=NCBI_GP:UUF02865.1;Name=UUF02865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802848.1;locus_tag=NDY25_02050;product=ABC transporter ATP-binding protein/permease;protein_id=UUF02865.1;transl_table=11 CP098604.1 Genbank gene 462495 463094 . - . ID=gene-NDY25_02055;Name=NDY25_02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02055 CP098604.1 Protein Homology CDS 462495 463094 . - 0 ID=cds-UUF02866.1;Parent=gene-NDY25_02055;Dbxref=NCBI_GP:UUF02866.1;Name=UUF02866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487596.1;locus_tag=NDY25_02055;product=plasmid pRiA4b ORF-3 family protein;protein_id=UUF02866.1;transl_table=11 CP098604.1 Genbank gene 463339 464604 . - . ID=gene-NDY25_02060;Name=NDY25_02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02060 CP098604.1 Protein Homology CDS 463339 464604 . - 0 ID=cds-UUF02867.1;Parent=gene-NDY25_02060;Dbxref=NCBI_GP:UUF02867.1;Name=UUF02867.1;Ontology_term=GO:0006812,GO:0055085,GO:0015299,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=solute:proton antiporter activity|0015299||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487582.1;locus_tag=NDY25_02060;product=cation:proton antiporter;protein_id=UUF02867.1;transl_table=11 CP098604.1 Genbank gene 464938 466533 . - . ID=gene-NDY25_02065;Name=NDY25_02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02065 CP098604.1 Protein Homology CDS 464938 466533 . - 0 ID=cds-UUF02868.1;Parent=gene-NDY25_02065;Dbxref=NCBI_GP:UUF02868.1;Name=UUF02868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158555.1;locus_tag=NDY25_02065;product=serine hydrolase;protein_id=UUF02868.1;transl_table=11 CP098604.1 Genbank gene 466556 467056 . - . ID=gene-NDY25_02070;Name=rraA;gbkey=Gene;gene=rraA;gene_biotype=protein_coding;locus_tag=NDY25_02070 CP098604.1 Protein Homology CDS 466556 467056 . - 0 ID=cds-UUF02869.1;Parent=gene-NDY25_02070;Dbxref=NCBI_GP:UUF02869.1;Name=UUF02869.1;Ontology_term=GO:0051252,GO:0008428;gbkey=CDS;gene=rraA;go_function=ribonuclease inhibitor activity|0008428||IEA;go_process=regulation of RNA metabolic process|0051252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172501.1;locus_tag=NDY25_02070;product=ribonuclease E activity regulator RraA;protein_id=UUF02869.1;transl_table=11 CP098604.1 Genbank gene 467381 468214 . + . ID=gene-NDY25_02075;Name=NDY25_02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02075 CP098604.1 Protein Homology CDS 467381 468214 . + 0 ID=cds-UUF02870.1;Parent=gene-NDY25_02075;Dbxref=NCBI_GP:UUF02870.1;Name=UUF02870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155814.1;locus_tag=NDY25_02075;product=DUF72 domain-containing protein;protein_id=UUF02870.1;transl_table=11 CP098604.1 Genbank gene 468324 469271 . + . ID=gene-NDY25_02080;Name=NDY25_02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02080 CP098604.1 Protein Homology CDS 468324 469271 . + 0 ID=cds-UUF02871.1;Parent=gene-NDY25_02080;Dbxref=NCBI_GP:UUF02871.1;Name=UUF02871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304048.1;locus_tag=NDY25_02080;product=DMT family transporter;protein_id=UUF02871.1;transl_table=11 CP098604.1 Genbank gene 469382 470452 . - . ID=gene-NDY25_02085;Name=NDY25_02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02085 CP098604.1 Protein Homology CDS 469382 470452 . - 0 ID=cds-UUF02872.1;Parent=gene-NDY25_02085;Dbxref=NCBI_GP:UUF02872.1;Name=UUF02872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005415818.1;locus_tag=NDY25_02085;product=sensor domain-containing diguanylate cyclase;protein_id=UUF02872.1;transl_table=11 CP098604.1 Genbank gene 470578 471300 . - . ID=gene-NDY25_02090;Name=NDY25_02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02090 CP098604.1 Protein Homology CDS 470578 471300 . - 0 ID=cds-UUF02873.1;Parent=gene-NDY25_02090;Dbxref=NCBI_GP:UUF02873.1;Name=UUF02873.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301304.1;locus_tag=NDY25_02090;product=pseudouridine synthase;protein_id=UUF02873.1;transl_table=11 CP098604.1 Genbank gene 471297 473753 . - . ID=gene-NDY25_02095;Name=NDY25_02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02095 CP098604.1 Protein Homology CDS 471297 473753 . - 0 ID=cds-UUF02874.1;Parent=gene-NDY25_02095;Dbxref=NCBI_GP:UUF02874.1;Name=UUF02874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366900.1;locus_tag=NDY25_02095;product=EAL domain-containing protein;protein_id=UUF02874.1;transl_table=11 CP098604.1 Genbank gene 474028 475977 . - . ID=gene-NDY25_02100;Name=NDY25_02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02100 CP098604.1 Protein Homology CDS 474028 475977 . - 0 ID=cds-UUF02875.1;Parent=gene-NDY25_02100;Dbxref=NCBI_GP:UUF02875.1;Name=UUF02875.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159026.1;locus_tag=NDY25_02100;product=DEAD/DEAH box helicase;protein_id=UUF02875.1;transl_table=11 CP098604.1 Genbank gene 476149 476649 . + . ID=gene-NDY25_02105;Name=NDY25_02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02105 CP098604.1 Protein Homology CDS 476149 476649 . + 0 ID=cds-UUF02876.1;Parent=gene-NDY25_02105;Dbxref=NCBI_GP:UUF02876.1;Name=UUF02876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163290.1;locus_tag=NDY25_02105;product=sigma-70 family RNA polymerase sigma factor;protein_id=UUF02876.1;transl_table=11 CP098604.1 Genbank gene 476678 477325 . + . ID=gene-NDY25_02110;Name=NDY25_02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02110 CP098604.1 Protein Homology CDS 476678 477325 . + 0 ID=cds-UUF02877.1;Parent=gene-NDY25_02110;Dbxref=NCBI_GP:UUF02877.1;Name=UUF02877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169196.1;locus_tag=NDY25_02110;product=hypothetical protein;protein_id=UUF02877.1;transl_table=11 CP098604.1 Genbank gene 477481 477723 . + . ID=gene-NDY25_02115;Name=NDY25_02115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02115 CP098604.1 Protein Homology CDS 477481 477723 . + 0 ID=cds-UUF02878.1;Parent=gene-NDY25_02115;Dbxref=NCBI_GP:UUF02878.1;Name=UUF02878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037775.1;locus_tag=NDY25_02115;product=RNA-binding S4 domain-containing protein;protein_id=UUF02878.1;transl_table=11 CP098604.1 Genbank gene 477720 478040 . + . ID=gene-NDY25_02120;Name=NDY25_02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02120 CP098604.1 Protein Homology CDS 477720 478040 . + 0 ID=cds-UUF02879.1;Parent=gene-NDY25_02120;Dbxref=NCBI_GP:UUF02879.1;Name=UUF02879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169195.1;locus_tag=NDY25_02120;product=hypothetical protein;protein_id=UUF02879.1;transl_table=11 CP098604.1 Genbank gene 478322 479500 . - . ID=gene-NDY25_02125;Name=ubiM;gbkey=Gene;gene=ubiM;gene_biotype=protein_coding;locus_tag=NDY25_02125 CP098604.1 Protein Homology CDS 478322 479500 . - 0 ID=cds-UUF02880.1;Parent=gene-NDY25_02125;Dbxref=NCBI_GP:UUF02880.1;Name=UUF02880.1;Ontology_term=GO:0006744,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiM;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437873.1;locus_tag=NDY25_02125;product=5-demethoxyubiquinol-8 5-hydroxylase UbiM;protein_id=UUF02880.1;transl_table=11 CP098604.1 Genbank gene 479675 480076 . - . ID=gene-NDY25_02130;Name=NDY25_02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02130 CP098604.1 Protein Homology CDS 479675 480076 . - 0 ID=cds-UUF02881.1;Parent=gene-NDY25_02130;Dbxref=NCBI_GP:UUF02881.1;Name=UUF02881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005998294.1;locus_tag=NDY25_02130;product=MAPEG family protein;protein_id=UUF02881.1;transl_table=11 CP098604.1 Genbank gene 480102 480644 . - . ID=gene-NDY25_02135;Name=NDY25_02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02135 CP098604.1 Protein Homology CDS 480102 480644 . - 0 ID=cds-UUF02882.1;Parent=gene-NDY25_02135;Dbxref=NCBI_GP:UUF02882.1;Name=UUF02882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155824.1;locus_tag=NDY25_02135;product=DUF4019 domain-containing protein;protein_id=UUF02882.1;transl_table=11 CP098604.1 Genbank gene 480813 481061 . - . ID=gene-NDY25_02140;Name=NDY25_02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02140 CP098604.1 Protein Homology CDS 480813 481061 . - 0 ID=cds-UUF02883.1;Parent=gene-NDY25_02140;Dbxref=NCBI_GP:UUF02883.1;Name=UUF02883.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487551.1;locus_tag=NDY25_02140;product=hypothetical protein;protein_id=UUF02883.1;transl_table=11 CP098604.1 Genbank gene 481128 482315 . - . ID=gene-NDY25_02145;Name=NDY25_02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02145 CP098604.1 Protein Homology CDS 481128 482315 . - 0 ID=cds-UUF02884.1;Parent=gene-NDY25_02145;Dbxref=NCBI_GP:UUF02884.1;Name=UUF02884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366917.1;locus_tag=NDY25_02145;product=hypothetical protein;protein_id=UUF02884.1;transl_table=11 CP098604.1 Genbank pseudogene 482463 483923 . + . ID=gene-NDY25_02150;Name=NDY25_02150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02150;pseudo=true CP098604.1 Protein Homology CDS 482463 483923 . + 0 ID=cds-NDY25_02150;Parent=gene-NDY25_02150;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159023.1;locus_tag=NDY25_02150;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 483887 484468 . + . ID=gene-NDY25_02155;Name=NDY25_02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02155 CP098604.1 Protein Homology CDS 483887 484468 . + 0 ID=cds-UUF04495.1;Parent=gene-NDY25_02155;Dbxref=NCBI_GP:UUF04495.1;Name=UUF04495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452842.1;locus_tag=NDY25_02155;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=UUF04495.1;transl_table=11 CP098604.1 Genbank gene 484505 485806 . + . ID=gene-NDY25_02160;Name=NDY25_02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02160 CP098604.1 Protein Homology CDS 484505 485806 . + 0 ID=cds-UUF02885.1;Parent=gene-NDY25_02160;Dbxref=NCBI_GP:UUF02885.1;Name=UUF02885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155829.1;locus_tag=NDY25_02160;product=ectonucleotide pyrophosphatase/phosphodiesterase;protein_id=UUF02885.1;transl_table=11 CP098604.1 Genbank gene 485850 487193 . + . ID=gene-NDY25_02165;Name=NDY25_02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02165 CP098604.1 Protein Homology CDS 485850 487193 . + 0 ID=cds-UUF02886.1;Parent=gene-NDY25_02165;Dbxref=NCBI_GP:UUF02886.1;Name=UUF02886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463422.1;locus_tag=NDY25_02165;product=chloride channel protein;protein_id=UUF02886.1;transl_table=11 CP098604.1 Genbank gene 487295 487477 . - . ID=gene-NDY25_02170;Name=NDY25_02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02170 CP098604.1 Protein Homology CDS 487295 487477 . - 0 ID=cds-UUF02887.1;Parent=gene-NDY25_02170;Dbxref=NCBI_GP:UUF02887.1;Name=UUF02887.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450150.1;locus_tag=NDY25_02170;product=30S ribosomal protein THX;protein_id=UUF02887.1;transl_table=11 CP098604.1 Genbank gene 487614 488030 . - . ID=gene-NDY25_02175;Name=NDY25_02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02175 CP098604.1 Protein Homology CDS 487614 488030 . - 0 ID=cds-UUF02888.1;Parent=gene-NDY25_02175;Dbxref=NCBI_GP:UUF02888.1;Name=UUF02888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366931.1;locus_tag=NDY25_02175;product=MerC domain-containing protein;protein_id=UUF02888.1;transl_table=11 CP098604.1 Genbank gene 488209 490275 . + . ID=gene-NDY25_02180;Name=NDY25_02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02180 CP098604.1 Protein Homology CDS 488209 490275 . + 0 ID=cds-UUF02889.1;Parent=gene-NDY25_02180;Dbxref=NCBI_GP:UUF02889.1;Name=UUF02889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450152.1;locus_tag=NDY25_02180;product=TonB-dependent receptor;protein_id=UUF02889.1;transl_table=11 CP098604.1 Genbank gene 490620 491042 . + . ID=gene-NDY25_02185;Name=NDY25_02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02185 CP098604.1 Protein Homology CDS 490620 491042 . + 0 ID=cds-UUF02890.1;Parent=gene-NDY25_02185;Dbxref=NCBI_GP:UUF02890.1;Name=UUF02890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037789.1;locus_tag=NDY25_02185;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=UUF02890.1;transl_table=11 CP098604.1 Genbank gene 491039 492262 . + . ID=gene-NDY25_02190;Name=NDY25_02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02190 CP098604.1 Protein Homology CDS 491039 492262 . + 0 ID=cds-UUF02891.1;Parent=gene-NDY25_02190;Dbxref=NCBI_GP:UUF02891.1;Name=UUF02891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450154.1;locus_tag=NDY25_02190;product=MFS transporter;protein_id=UUF02891.1;transl_table=11 CP098604.1 Genbank gene 492460 494835 . + . ID=gene-NDY25_02195;Name=NDY25_02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02195 CP098604.1 Protein Homology CDS 492460 494835 . + 0 ID=cds-UUF02892.1;Parent=gene-NDY25_02195;Dbxref=NCBI_GP:UUF02892.1;Name=UUF02892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348048.1;locus_tag=NDY25_02195;product=TonB-dependent receptor;protein_id=UUF02892.1;transl_table=11 CP098604.1 Genbank gene 495756 497504 . + . ID=gene-NDY25_02200;Name=NDY25_02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02200 CP098604.1 Protein Homology CDS 495756 497504 . + 0 ID=cds-UUF04496.1;Parent=gene-NDY25_02200;Dbxref=NCBI_GP:UUF04496.1;Name=UUF04496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159020.1;locus_tag=NDY25_02200;product=S8 family serine peptidase;protein_id=UUF04496.1;transl_table=11 CP098604.1 Genbank gene 497506 498120 . + . ID=gene-NDY25_02205;Name=NDY25_02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02205 CP098604.1 Protein Homology CDS 497506 498120 . + 0 ID=cds-UUF02893.1;Parent=gene-NDY25_02205;Dbxref=NCBI_GP:UUF02893.1;Name=UUF02893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051860.1;locus_tag=NDY25_02205;product=hypothetical protein;protein_id=UUF02893.1;transl_table=11 CP098604.1 Genbank pseudogene 498222 500039 . + . ID=gene-NDY25_02210;Name=NDY25_02210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02210;pseudo=true CP098604.1 Protein Homology CDS 498222 500039 . + 0 ID=cds-NDY25_02210;Parent=gene-NDY25_02210;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508359.1;locus_tag=NDY25_02210;product=S8 family serine peptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 500041 500634 . + . ID=gene-NDY25_02215;Name=NDY25_02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02215 CP098604.1 Protein Homology CDS 500041 500634 . + 0 ID=cds-UUF02894.1;Parent=gene-NDY25_02215;Dbxref=NCBI_GP:UUF02894.1;Name=UUF02894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571884.1;locus_tag=NDY25_02215;product=hypothetical protein;protein_id=UUF02894.1;transl_table=11 CP098604.1 Genbank gene 500732 501763 . - . ID=gene-NDY25_02220;Name=NDY25_02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02220 CP098604.1 Protein Homology CDS 500732 501763 . - 0 ID=cds-UUF02895.1;Parent=gene-NDY25_02220;Dbxref=NCBI_GP:UUF02895.1;Name=UUF02895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159019.1;locus_tag=NDY25_02220;product=aldo/keto reductase;protein_id=UUF02895.1;transl_table=11 CP098604.1 Genbank gene 501821 503032 . - . ID=gene-NDY25_02225;Name=NDY25_02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02225 CP098604.1 Protein Homology CDS 501821 503032 . - 0 ID=cds-UUF02896.1;Parent=gene-NDY25_02225;Dbxref=NCBI_GP:UUF02896.1;Name=UUF02896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017119002.1;locus_tag=NDY25_02225;product=MFS transporter;protein_id=UUF02896.1;transl_table=11 CP098604.1 Genbank gene 503133 504047 . + . ID=gene-NDY25_02230;Name=NDY25_02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02230 CP098604.1 Protein Homology CDS 503133 504047 . + 0 ID=cds-UUF02897.1;Parent=gene-NDY25_02230;Dbxref=NCBI_GP:UUF02897.1;Name=UUF02897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157161.1;locus_tag=NDY25_02230;product=LysR family transcriptional regulator;protein_id=UUF02897.1;transl_table=11 CP098604.1 Genbank gene 504972 505175 . - . ID=gene-NDY25_02235;Name=NDY25_02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02235 CP098604.1 Protein Homology CDS 504972 505175 . - 0 ID=cds-UUF04497.1;Parent=gene-NDY25_02235;Dbxref=NCBI_GP:UUF04497.1;Name=UUF04497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488570.1;locus_tag=NDY25_02235;product=hypothetical protein;protein_id=UUF04497.1;transl_table=11 CP098604.1 Genbank gene 505436 505729 . - . ID=gene-NDY25_02240;Name=NDY25_02240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02240 CP098604.1 GeneMarkS-2+ CDS 505436 505729 . - 0 ID=cds-UUF02898.1;Parent=gene-NDY25_02240;Dbxref=NCBI_GP:UUF02898.1;Name=UUF02898.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_02240;product=hypothetical protein;protein_id=UUF02898.1;transl_table=11 CP098604.1 Genbank gene 505812 506285 . - . ID=gene-NDY25_02245;Name=NDY25_02245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02245 CP098604.1 Protein Homology CDS 505812 506285 . - 0 ID=cds-UUF02899.1;Parent=gene-NDY25_02245;Dbxref=NCBI_GP:UUF02899.1;Name=UUF02899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157164.1;locus_tag=NDY25_02245;product=cupin domain-containing protein;protein_id=UUF02899.1;transl_table=11 CP098604.1 Genbank gene 506474 507373 . + . ID=gene-NDY25_02250;Name=NDY25_02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02250 CP098604.1 Protein Homology CDS 506474 507373 . + 0 ID=cds-UUF04498.1;Parent=gene-NDY25_02250;Dbxref=NCBI_GP:UUF04498.1;Name=UUF04498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912844.1;locus_tag=NDY25_02250;product=LysR family transcriptional regulator;protein_id=UUF04498.1;transl_table=11 CP098604.1 Genbank pseudogene 507765 508686 . - . ID=gene-NDY25_02255;Name=NDY25_02255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02255;pseudo=true CP098604.1 Protein Homology CDS 507765 508686 . - 0 ID=cds-NDY25_02255;Parent=gene-NDY25_02255;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012509957.1;locus_tag=NDY25_02255;product=IS110 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 509142 510125 . - . ID=gene-NDY25_02260;Name=NDY25_02260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02260 CP098604.1 Protein Homology CDS 509142 510125 . - 0 ID=cds-UUF02900.1;Parent=gene-NDY25_02260;Dbxref=NCBI_GP:UUF02900.1;Name=UUF02900.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437855.1;locus_tag=NDY25_02260;product=aldo/keto reductase;protein_id=UUF02900.1;transl_table=11 CP098604.1 Genbank gene 510369 511061 . - . ID=gene-NDY25_02265;Name=NDY25_02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02265 CP098604.1 Protein Homology CDS 510369 511061 . - 0 ID=cds-UUF02901.1;Parent=gene-NDY25_02265;Dbxref=NCBI_GP:UUF02901.1;Name=UUF02901.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450887.1;locus_tag=NDY25_02265;product=TetR/AcrR family transcriptional regulator;protein_id=UUF02901.1;transl_table=11 CP098604.1 Genbank pseudogene 511054 512558 . - . ID=gene-NDY25_02270;Name=NDY25_02270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02270;pseudo=true CP098604.1 Protein Homology CDS 511054 512558 . - 0 ID=cds-NDY25_02270;Parent=gene-NDY25_02270;Note=frameshifted;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450886.1;locus_tag=NDY25_02270;product=efflux transporter outer membrane subunit;pseudo=true;transl_table=11 CP098604.1 Genbank gene 512560 515703 . - . ID=gene-NDY25_02275;Name=NDY25_02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02275 CP098604.1 Protein Homology CDS 512560 515703 . - 0 ID=cds-UUF02902.1;Parent=gene-NDY25_02275;Dbxref=NCBI_GP:UUF02902.1;Name=UUF02902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348058.1;locus_tag=NDY25_02275;product=efflux RND transporter permease subunit;protein_id=UUF02902.1;transl_table=11 CP098604.1 Genbank gene 515720 516940 . - . ID=gene-NDY25_02280;Name=NDY25_02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02280 CP098604.1 Protein Homology CDS 515720 516940 . - 0 ID=cds-UUF02903.1;Parent=gene-NDY25_02280;Dbxref=NCBI_GP:UUF02903.1;Name=UUF02903.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488557.1;locus_tag=NDY25_02280;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF02903.1;transl_table=11 CP098604.1 Genbank gene 517073 517690 . + . ID=gene-NDY25_02285;Name=NDY25_02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02285 CP098604.1 Protein Homology CDS 517073 517690 . + 0 ID=cds-UUF02904.1;Parent=gene-NDY25_02285;Dbxref=NCBI_GP:UUF02904.1;Name=UUF02904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437850.1;locus_tag=NDY25_02285;product=TetR/AcrR family transcriptional regulator;protein_id=UUF02904.1;transl_table=11 CP098604.1 Genbank gene 518456 518950 . - . ID=gene-NDY25_02290;Name=NDY25_02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02290 CP098604.1 Protein Homology CDS 518456 518950 . - 0 ID=cds-UUF02905.1;Parent=gene-NDY25_02290;Dbxref=NCBI_GP:UUF02905.1;Name=UUF02905.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452534.1;locus_tag=NDY25_02290;product=transcriptional repressor;protein_id=UUF02905.1;transl_table=11 CP098604.1 Genbank gene 518966 520369 . - . ID=gene-NDY25_02295;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=NDY25_02295 CP098604.1 Protein Homology CDS 518966 520369 . - 0 ID=cds-UUF02906.1;Parent=gene-NDY25_02295;Dbxref=NCBI_GP:UUF02906.1;Name=UUF02906.1;Ontology_term=GO:0006424,GO:0004818,GO:0009332;gbkey=CDS;gene=gltX;go_component=glutamate-tRNA ligase complex|0009332||IEA;go_function=glutamate-tRNA ligase activity|0004818||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452532.1;locus_tag=NDY25_02295;product=glutamate--tRNA ligase;protein_id=UUF02906.1;transl_table=11 CP098604.1 Genbank gene 520437 521528 . - . ID=gene-NDY25_02300;Name=NDY25_02300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02300 CP098604.1 Protein Homology CDS 520437 521528 . - 0 ID=cds-UUF02907.1;Parent=gene-NDY25_02300;Dbxref=NCBI_GP:UUF02907.1;Name=UUF02907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090626.1;locus_tag=NDY25_02300;product=DUF3616 domain-containing protein;protein_id=UUF02907.1;transl_table=11 CP098604.1 Genbank gene 521550 522434 . - . ID=gene-NDY25_02305;Name=NDY25_02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02305 CP098604.1 Protein Homology CDS 521550 522434 . - 0 ID=cds-UUF02908.1;Parent=gene-NDY25_02305;Dbxref=NCBI_GP:UUF02908.1;Name=UUF02908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508370.1;locus_tag=NDY25_02305;product=carbon-nitrogen hydrolase family protein;protein_id=UUF02908.1;transl_table=11 CP098604.1 Genbank gene 522493 523095 . - . ID=gene-NDY25_02310;Name=NDY25_02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02310 CP098604.1 Protein Homology CDS 522493 523095 . - 0 ID=cds-UUF02909.1;Parent=gene-NDY25_02310;Dbxref=NCBI_GP:UUF02909.1;Name=UUF02909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452529.1;locus_tag=NDY25_02310;product=GNAT family N-acetyltransferase;protein_id=UUF02909.1;transl_table=11 CP098604.1 Genbank gene 523139 523561 . - . ID=gene-NDY25_02315;Name=NDY25_02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02315 CP098604.1 Protein Homology CDS 523139 523561 . - 0 ID=cds-UUF02910.1;Parent=gene-NDY25_02315;Dbxref=NCBI_GP:UUF02910.1;Name=UUF02910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452528.1;locus_tag=NDY25_02315;product=hypothetical protein;protein_id=UUF02910.1;transl_table=11 CP098604.1 Genbank gene 523569 524888 . - . ID=gene-NDY25_02320;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=NDY25_02320 CP098604.1 Protein Homology CDS 523569 524888 . - 0 ID=cds-UUF02911.1;Parent=gene-NDY25_02320;Dbxref=NCBI_GP:UUF02911.1;Name=UUF02911.1;gbkey=CDS;gene=creD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929861.1;locus_tag=NDY25_02320;product=cell envelope integrity protein CreD;protein_id=UUF02911.1;transl_table=11 CP098604.1 Genbank gene 525758 527206 . - . ID=gene-NDY25_02325;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;locus_tag=NDY25_02325 CP098604.1 Protein Homology CDS 525758 527206 . - 0 ID=cds-UUF02912.1;Parent=gene-NDY25_02325;Dbxref=NCBI_GP:UUF02912.1;Name=UUF02912.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016021;gbkey=CDS;gene=creC;go_component=integral component of membrane|0016021||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090630.1;locus_tag=NDY25_02325;product=two-component system sensor histidine kinase CreC;protein_id=UUF02912.1;transl_table=11 CP098604.1 Genbank gene 527252 527956 . - . ID=gene-NDY25_02330;Name=creB;gbkey=Gene;gene=creB;gene_biotype=protein_coding;locus_tag=NDY25_02330 CP098604.1 Protein Homology CDS 527252 527956 . - 0 ID=cds-UUF02913.1;Parent=gene-NDY25_02330;Dbxref=NCBI_GP:UUF02913.1;Name=UUF02913.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=creB;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902310.1;locus_tag=NDY25_02330;product=two-component system response regulator CreB;protein_id=UUF02913.1;transl_table=11 CP098604.1 Genbank gene 528052 528814 . + . ID=gene-NDY25_02335;Name=NDY25_02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02335 CP098604.1 Protein Homology CDS 528052 528096 . + 0 ID=cds-UUF04499.1;Parent=gene-NDY25_02335;Dbxref=NCBI_GP:UUF04499.1;Name=UUF04499.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_02335;product=IS5 family transposase;protein_id=UUF04499.1;transl_table=11 CP098604.1 Protein Homology CDS 528098 528814 . + 0 ID=cds-UUF04499.1;Parent=gene-NDY25_02335;Dbxref=NCBI_GP:UUF04499.1;Name=UUF04499.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_02335;product=IS5 family transposase;protein_id=UUF04499.1;transl_table=11 CP098604.1 Genbank gene 528854 529762 . + . ID=gene-NDY25_02340;Name=rlmJ;gbkey=Gene;gene=rlmJ;gene_biotype=protein_coding;locus_tag=NDY25_02340 CP098604.1 Protein Homology CDS 528854 529762 . + 0 ID=cds-UUF02914.1;Parent=gene-NDY25_02340;Dbxref=NCBI_GP:UUF02914.1;Name=UUF02914.1;Ontology_term=GO:0070475,GO:0008649;gbkey=CDS;gene=rlmJ;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802763.1;locus_tag=NDY25_02340;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=UUF02914.1;transl_table=11 CP098604.1 Genbank gene 529956 530498 . + . ID=gene-NDY25_02345;Name=NDY25_02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02345 CP098604.1 Protein Homology CDS 529956 530498 . + 0 ID=cds-UUF02915.1;Parent=gene-NDY25_02345;Dbxref=NCBI_GP:UUF02915.1;Name=UUF02915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301140.1;locus_tag=NDY25_02345;product=GNAT family N-acetyltransferase;protein_id=UUF02915.1;transl_table=11 CP098604.1 Genbank gene 531025 534495 . + . ID=gene-NDY25_02350;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=NDY25_02350 CP098604.1 Protein Homology CDS 531025 534495 . + 0 ID=cds-UUF02916.1;Parent=gene-NDY25_02350;Dbxref=NCBI_GP:UUF02916.1;Name=UUF02916.1;Ontology_term=GO:0006281,GO:0003676,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944090.1;locus_tag=NDY25_02350;product=transcription-repair coupling factor;protein_id=UUF02916.1;transl_table=11 CP098604.1 Genbank gene 534699 535328 . - . ID=gene-NDY25_02355;Name=NDY25_02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02355 CP098604.1 GeneMarkS-2+ CDS 534699 535328 . - 0 ID=cds-UUF02917.1;Parent=gene-NDY25_02355;Dbxref=NCBI_GP:UUF02917.1;Name=UUF02917.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_02355;product=hypothetical protein;protein_id=UUF02917.1;transl_table=11 CP098604.1 Genbank pseudogene 539436 539726 . - . ID=gene-NDY25_02360;Name=NDY25_02360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02360;pseudo=true CP098604.1 Protein Homology CDS 539436 539726 . - 0 ID=cds-NDY25_02360;Parent=gene-NDY25_02360;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021508.2;locus_tag=NDY25_02360;product=DUF2235 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 539923 540483 . - . ID=gene-NDY25_02365;Name=NDY25_02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02365 CP098604.1 Protein Homology CDS 539923 540483 . - 0 ID=cds-UUF02918.1;Parent=gene-NDY25_02365;Dbxref=NCBI_GP:UUF02918.1;Name=UUF02918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364006.1;locus_tag=NDY25_02365;product=hypothetical protein;protein_id=UUF02918.1;transl_table=11 CP098604.1 Genbank gene 540629 540796 . - . ID=gene-NDY25_02370;Name=NDY25_02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02370 CP098604.1 GeneMarkS-2+ CDS 540629 540796 . - 0 ID=cds-UUF02919.1;Parent=gene-NDY25_02370;Dbxref=NCBI_GP:UUF02919.1;Name=UUF02919.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_02370;product=hypothetical protein;protein_id=UUF02919.1;transl_table=11 CP098604.1 Genbank gene 540810 541223 . - . ID=gene-NDY25_02375;Name=NDY25_02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02375 CP098604.1 GeneMarkS-2+ CDS 540810 541223 . - 0 ID=cds-UUF02920.1;Parent=gene-NDY25_02375;Dbxref=NCBI_GP:UUF02920.1;Name=UUF02920.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_02375;product=hypothetical protein;protein_id=UUF02920.1;transl_table=11 CP098604.1 Genbank pseudogene 541683 542033 . - . ID=gene-NDY25_02380;Name=NDY25_02380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02380;pseudo=true CP098604.1 Protein Homology CDS 541683 542033 . - 0 ID=cds-NDY25_02380;Parent=gene-NDY25_02380;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913224.1;locus_tag=NDY25_02380;product=type I toxin-antitoxin system SymE family toxin;pseudo=true;transl_table=11 CP098604.1 Genbank gene 542623 542949 . - . ID=gene-NDY25_02385;Name=NDY25_02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02385 CP098604.1 GeneMarkS-2+ CDS 542623 542949 . - 0 ID=cds-UUF02921.1;Parent=gene-NDY25_02385;Dbxref=NCBI_GP:UUF02921.1;Name=UUF02921.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_02385;product=hypothetical protein;protein_id=UUF02921.1;transl_table=11 CP098604.1 Genbank gene 542989 543318 . + . ID=gene-NDY25_02390;Name=NDY25_02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02390 CP098604.1 Protein Homology CDS 542989 543318 . + 0 ID=cds-UUF02922.1;Parent=gene-NDY25_02390;Dbxref=NCBI_GP:UUF02922.1;Name=UUF02922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016905011.1;locus_tag=NDY25_02390;product=STAS domain-containing protein;protein_id=UUF02922.1;transl_table=11 CP098604.1 Genbank gene 543337 545352 . + . ID=gene-NDY25_02395;Name=NDY25_02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02395 CP098604.1 Protein Homology CDS 543337 545352 . + 0 ID=cds-UUF02923.1;Parent=gene-NDY25_02395;Dbxref=NCBI_GP:UUF02923.1;Name=UUF02923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576106.1;locus_tag=NDY25_02395;product=chemotaxis protein CheA;protein_id=UUF02923.1;transl_table=11 CP098604.1 Genbank gene 545421 547577 . + . ID=gene-NDY25_02400;Name=NDY25_02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02400 CP098604.1 Protein Homology CDS 545421 547577 . + 0 ID=cds-UUF02924.1;Parent=gene-NDY25_02400;Dbxref=NCBI_GP:UUF02924.1;Name=UUF02924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971660.1;locus_tag=NDY25_02400;product=methyl-accepting chemotaxis protein;protein_id=UUF02924.1;transl_table=11 CP098604.1 Genbank gene 547588 548106 . + . ID=gene-NDY25_02405;Name=NDY25_02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02405 CP098604.1 Protein Homology CDS 547588 548106 . + 0 ID=cds-UUF02925.1;Parent=gene-NDY25_02405;Dbxref=NCBI_GP:UUF02925.1;Name=UUF02925.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502619.1;locus_tag=NDY25_02405;product=chemotaxis protein CheW;protein_id=UUF02925.1;transl_table=11 CP098604.1 Genbank gene 548135 549418 . + . ID=gene-NDY25_02410;Name=NDY25_02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02410 CP098604.1 Protein Homology CDS 548135 549418 . + 0 ID=cds-UUF02926.1;Parent=gene-NDY25_02410;Dbxref=NCBI_GP:UUF02926.1;Name=UUF02926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375512.1;locus_tag=NDY25_02410;product=EAL domain-containing protein;protein_id=UUF02926.1;transl_table=11 CP098604.1 Genbank gene 549422 550228 . + . ID=gene-NDY25_02415;Name=NDY25_02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02415 CP098604.1 Protein Homology CDS 549422 550228 . + 0 ID=cds-UUF02927.1;Parent=gene-NDY25_02415;Dbxref=NCBI_GP:UUF02927.1;Name=UUF02927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301146.1;locus_tag=NDY25_02415;product=protein-glutamate O-methyltransferase CheR;protein_id=UUF02927.1;transl_table=11 CP098604.1 Genbank gene 550225 551364 . + . ID=gene-NDY25_02420;Name=NDY25_02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02420 CP098604.1 Protein Homology CDS 550225 551364 . + 0 ID=cds-UUF04500.1;Parent=gene-NDY25_02420;Dbxref=NCBI_GP:UUF04500.1;Name=UUF04500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971662.1;locus_tag=NDY25_02420;product=chemotaxis response regulator protein-glutamate methylesterase;protein_id=UUF04500.1;transl_table=11 CP098604.1 Genbank gene 551389 552951 . - . ID=gene-NDY25_02425;Name=NDY25_02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02425 CP098604.1 Protein Homology CDS 551389 552951 . - 0 ID=cds-UUF02928.1;Parent=gene-NDY25_02425;Dbxref=NCBI_GP:UUF02928.1;Name=UUF02928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051886.1;locus_tag=NDY25_02425;product=phospholipase D family protein;protein_id=UUF02928.1;transl_table=11 CP098604.1 Genbank gene 553106 555208 . - . ID=gene-NDY25_02430;Name=NDY25_02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02430 CP098604.1 Protein Homology CDS 553106 555208 . - 0 ID=cds-UUF02929.1;Parent=gene-NDY25_02430;Dbxref=NCBI_GP:UUF02929.1;Name=UUF02929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488112.1;locus_tag=NDY25_02430;product=peptidase;protein_id=UUF02929.1;transl_table=11 CP098604.1 Genbank gene 555433 555750 . - . ID=gene-NDY25_02435;Name=NDY25_02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02435 CP098604.1 Protein Homology CDS 555433 555750 . - 0 ID=cds-UUF02930.1;Parent=gene-NDY25_02435;Dbxref=NCBI_GP:UUF02930.1;Name=UUF02930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157192.1;locus_tag=NDY25_02435;product=hypothetical protein;protein_id=UUF02930.1;transl_table=11 CP098604.1 Genbank gene 555903 556652 . - . ID=gene-NDY25_02440;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=NDY25_02440 CP098604.1 Protein Homology CDS 555903 556652 . - 0 ID=cds-UUF02931.1;Parent=gene-NDY25_02440;Dbxref=NCBI_GP:UUF02931.1;Name=UUF02931.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167506.1;locus_tag=NDY25_02440;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=UUF02931.1;transl_table=11 CP098604.1 Genbank gene 556623 557468 . + . ID=gene-NDY25_02445;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=NDY25_02445 CP098604.1 Protein Homology CDS 556623 557468 . + 0 ID=cds-UUF02932.1;Parent=gene-NDY25_02445;Dbxref=NCBI_GP:UUF02932.1;Name=UUF02932.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453350.1;locus_tag=NDY25_02445;product=deoxyribonuclease V;protein_id=UUF02932.1;transl_table=11 CP098604.1 Genbank gene 557583 558473 . + . ID=gene-NDY25_02450;Name=NDY25_02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02450 CP098604.1 Protein Homology CDS 557583 558473 . + 0 ID=cds-UUF02933.1;Parent=gene-NDY25_02450;Dbxref=NCBI_GP:UUF02933.1;Name=UUF02933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375490.1;locus_tag=NDY25_02450;product=pirin family protein;protein_id=UUF02933.1;transl_table=11 CP098604.1 Genbank gene 558730 559191 . + . ID=gene-NDY25_02455;Name=NDY25_02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02455 CP098604.1 Protein Homology CDS 558730 559191 . + 0 ID=cds-UUF02934.1;Parent=gene-NDY25_02455;Dbxref=NCBI_GP:UUF02934.1;Name=UUF02934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488124.1;locus_tag=NDY25_02455;product=hypothetical protein;protein_id=UUF02934.1;transl_table=11 CP098604.1 Genbank gene 559300 559731 . - . ID=gene-NDY25_02460;Name=NDY25_02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02460 CP098604.1 Protein Homology CDS 559300 559731 . - 0 ID=cds-UUF02935.1;Parent=gene-NDY25_02460;Dbxref=NCBI_GP:UUF02935.1;Name=UUF02935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453353.1;locus_tag=NDY25_02460;product=OsmC family protein;protein_id=UUF02935.1;transl_table=11 CP098604.1 Genbank gene 559765 560625 . - . ID=gene-NDY25_02465;Name=NDY25_02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02465 CP098604.1 Protein Homology CDS 559765 560625 . - 0 ID=cds-UUF02936.1;Parent=gene-NDY25_02465;Dbxref=NCBI_GP:UUF02936.1;Name=UUF02936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157199.1;locus_tag=NDY25_02465;product=pirin family protein;protein_id=UUF02936.1;transl_table=11 CP098604.1 Genbank gene 560880 562952 . + . ID=gene-NDY25_02470;Name=NDY25_02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02470 CP098604.1 Protein Homology CDS 560880 562952 . + 0 ID=cds-UUF02937.1;Parent=gene-NDY25_02470;Dbxref=NCBI_GP:UUF02937.1;Name=UUF02937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802008.1;locus_tag=NDY25_02470;product=carbon starvation protein A;protein_id=UUF02937.1;transl_table=11 CP098604.1 Genbank gene 562952 563176 . + . ID=gene-NDY25_02475;Name=NDY25_02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02475 CP098604.1 Protein Homology CDS 562952 563176 . + 0 ID=cds-UUF02938.1;Parent=gene-NDY25_02475;Dbxref=NCBI_GP:UUF02938.1;Name=UUF02938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508400.1;locus_tag=NDY25_02475;product=CstA-like transporter-associated (seleno)protein;protein_id=UUF02938.1;transl_table=11 CP098604.1 Genbank gene 563817 564521 . - . ID=gene-NDY25_02480;Name=NDY25_02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02480 CP098604.1 Protein Homology CDS 563817 564521 . - 0 ID=cds-UUF04501.1;Parent=gene-NDY25_02480;Dbxref=NCBI_GP:UUF04501.1;Name=UUF04501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174244.1;locus_tag=NDY25_02480;product=HAD family hydrolase;protein_id=UUF04501.1;transl_table=11 CP098604.1 Genbank gene 564763 565527 . + . ID=gene-NDY25_02485;Name=NDY25_02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02485 CP098604.1 Protein Homology CDS 564763 565527 . + 0 ID=cds-UUF02939.1;Parent=gene-NDY25_02485;Dbxref=NCBI_GP:UUF02939.1;Name=UUF02939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472422.1;locus_tag=NDY25_02485;product=ankyrin repeat domain-containing protein;protein_id=UUF02939.1;transl_table=11 CP098604.1 Genbank pseudogene 565564 566759 . + . ID=gene-NDY25_02490;Name=NDY25_02490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02490;pseudo=true CP098604.1 Protein Homology CDS 565564 566759 . + 0 ID=cds-NDY25_02490;Parent=gene-NDY25_02490;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157202.1;locus_tag=NDY25_02490;product=DUF2974 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 566805 568055 . - . ID=gene-NDY25_02495;Name=NDY25_02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02495 CP098604.1 Protein Homology CDS 566805 568055 . - 0 ID=cds-UUF02940.1;Parent=gene-NDY25_02495;Dbxref=NCBI_GP:UUF02940.1;Name=UUF02940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904078.1;locus_tag=NDY25_02495;product=DUF819 family protein;protein_id=UUF02940.1;transl_table=11 CP098604.1 Genbank gene 568288 568503 . - . ID=gene-NDY25_02500;Name=NDY25_02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02500 CP098604.1 Protein Homology CDS 568288 568503 . - 0 ID=cds-UUF02941.1;Parent=gene-NDY25_02500;Dbxref=NCBI_GP:UUF02941.1;Name=UUF02941.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020372752.1;locus_tag=NDY25_02500;product=hypothetical protein;protein_id=UUF02941.1;transl_table=11 CP098604.1 Genbank gene 569026 569634 . - . ID=gene-NDY25_02505;Name=NDY25_02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02505 CP098604.1 Protein Homology CDS 569026 569634 . - 0 ID=cds-UUF02942.1;Parent=gene-NDY25_02505;Dbxref=NCBI_GP:UUF02942.1;Name=UUF02942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572425.1;locus_tag=NDY25_02505;product=nucleotidyltransferase family protein;protein_id=UUF02942.1;transl_table=11 CP098604.1 Genbank gene 570070 571119 . - . ID=gene-NDY25_02510;Name=NDY25_02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02510 CP098604.1 Protein Homology CDS 570070 571119 . - 0 ID=cds-UUF02943.1;Parent=gene-NDY25_02510;Dbxref=NCBI_GP:UUF02943.1;Name=UUF02943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448861.1;locus_tag=NDY25_02510;product=XdhC family protein;protein_id=UUF02943.1;transl_table=11 CP098604.1 Genbank gene 571116 573323 . - . ID=gene-NDY25_02515;Name=NDY25_02515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02515 CP098604.1 Protein Homology CDS 571116 573323 . - 0 ID=cds-UUF02944.1;Parent=gene-NDY25_02515;Dbxref=NCBI_GP:UUF02944.1;Name=UUF02944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488152.1;locus_tag=NDY25_02515;product=xanthine dehydrogenase family protein molybdopterin-binding subunit;protein_id=UUF02944.1;transl_table=11 CP098604.1 Genbank gene 573325 574275 . - . ID=gene-NDY25_02520;Name=NDY25_02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02520 CP098604.1 Protein Homology CDS 573325 574275 . - 0 ID=cds-UUF02945.1;Parent=gene-NDY25_02520;Dbxref=NCBI_GP:UUF02945.1;Name=UUF02945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159004.1;locus_tag=NDY25_02520;product=xanthine dehydrogenase family protein subunit M;protein_id=UUF02945.1;transl_table=11 CP098604.1 Genbank gene 574272 574922 . - . ID=gene-NDY25_02525;Name=paoA;gbkey=Gene;gene=paoA;gene_biotype=protein_coding;locus_tag=NDY25_02525 CP098604.1 Protein Homology CDS 574272 574922 . - 0 ID=cds-UUF02946.1;Parent=gene-NDY25_02525;Dbxref=NCBI_GP:UUF02946.1;Name=UUF02946.1;Ontology_term=GO:0016491,GO:0046872,GO:0051536;gbkey=CDS;gene=paoA;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919229.1;locus_tag=NDY25_02525;product=aldehyde dehydrogenase iron-sulfur subunit;protein_id=UUF02946.1;transl_table=11 CP098604.1 Genbank gene 575371 576855 . + . ID=gene-NDY25_02530;Name=NDY25_02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02530 CP098604.1 Protein Homology CDS 575371 576855 . + 0 ID=cds-UUF02947.1;Parent=gene-NDY25_02530;Dbxref=NCBI_GP:UUF02947.1;Name=UUF02947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448865.1;locus_tag=NDY25_02530;product=sensor domain-containing diguanylate cyclase;protein_id=UUF02947.1;transl_table=11 CP098604.1 Genbank gene 577058 580408 . - . ID=gene-NDY25_02535;Name=NDY25_02535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02535 CP098604.1 Protein Homology CDS 577058 580408 . - 0 ID=cds-UUF04502.1;Parent=gene-NDY25_02535;Dbxref=NCBI_GP:UUF04502.1;Name=UUF04502.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: protein motif:HMM:NF014081.2;locus_tag=NDY25_02535;product=amidohydrolase family protein;protein_id=UUF04502.1;transl_table=11 CP098604.1 Genbank gene 580492 582690 . - . ID=gene-NDY25_02540;Name=NDY25_02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02540 CP098604.1 Protein Homology CDS 580492 582690 . - 0 ID=cds-UUF02948.1;Parent=gene-NDY25_02540;Dbxref=NCBI_GP:UUF02948.1;Name=UUF02948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448867.1;locus_tag=NDY25_02540;product=TonB-dependent receptor;protein_id=UUF02948.1;transl_table=11 CP098604.1 Genbank gene 582992 583516 . - . ID=gene-NDY25_02545;Name=ssb;gbkey=Gene;gene=ssb;gene_biotype=protein_coding;locus_tag=NDY25_02545 CP098604.1 Protein Homology CDS 582992 583516 . - 0 ID=cds-UUF02949.1;Parent=gene-NDY25_02545;Dbxref=NCBI_GP:UUF02949.1;Name=UUF02949.1;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0006351,GO:0003697;gbkey=CDS;gene=ssb;go_function=single-stranded DNA binding|0003697||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,transcription%2C DNA-templated|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157214.1;locus_tag=NDY25_02545;product=single-stranded DNA-binding protein;protein_id=UUF02949.1;transl_table=11 CP098604.1 Genbank gene 583790 584788 . + . ID=gene-NDY25_02550;Name=NDY25_02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02550 CP098604.1 Protein Homology CDS 583790 584788 . + 0 ID=cds-UUF04503.1;Parent=gene-NDY25_02550;Dbxref=NCBI_GP:UUF04503.1;Name=UUF04503.1;Ontology_term=GO:0008299;gbkey=CDS;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966188.1;locus_tag=NDY25_02550;product=polyprenyl synthetase family protein;protein_id=UUF04503.1;transl_table=11 CP098604.1 Genbank gene 584990 586399 . - . ID=gene-NDY25_02555;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=NDY25_02555 CP098604.1 Protein Homology CDS 584990 586399 . - 0 ID=cds-UUF02950.1;Parent=gene-NDY25_02555;Dbxref=NCBI_GP:UUF02950.1;Name=UUF02950.1;Ontology_term=GO:0009252,GO:0008764;gbkey=CDS;gene=murD;go_function=UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508423.1;locus_tag=NDY25_02555;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=UUF02950.1;transl_table=11 CP098604.1 Genbank gene 586380 587735 . - . ID=gene-NDY25_02560;Name=NDY25_02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02560 CP098604.1 Protein Homology CDS 586380 587735 . - 0 ID=cds-UUF02951.1;Parent=gene-NDY25_02560;Dbxref=NCBI_GP:UUF02951.1;Name=UUF02951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369381.1;locus_tag=NDY25_02560;product=endonuclease domain-containing protein;protein_id=UUF02951.1;transl_table=11 CP098604.1 Genbank gene 587732 588190 . - . ID=gene-NDY25_02565;Name=NDY25_02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02565 CP098604.1 Protein Homology CDS 587732 588190 . - 0 ID=cds-UUF02952.1;Parent=gene-NDY25_02565;Dbxref=NCBI_GP:UUF02952.1;Name=UUF02952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502553.1;locus_tag=NDY25_02565;product=hypothetical protein;protein_id=UUF02952.1;transl_table=11 CP098604.1 Genbank gene 588174 590783 . - . ID=gene-NDY25_02570;Name=NDY25_02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02570 CP098604.1 Protein Homology CDS 588174 590783 . - 0 ID=cds-UUF02953.1;Parent=gene-NDY25_02570;Dbxref=NCBI_GP:UUF02953.1;Name=UUF02953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090660.1;locus_tag=NDY25_02570;product=bifunctional aspartate kinase/diaminopimelate decarboxylase;protein_id=UUF02953.1;transl_table=11 CP098604.1 Genbank gene 590966 591844 . + . ID=gene-NDY25_02575;Name=NDY25_02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02575 CP098604.1 Protein Homology CDS 590966 591844 . + 0 ID=cds-UUF02954.1;Parent=gene-NDY25_02575;Dbxref=NCBI_GP:UUF02954.1;Name=UUF02954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375445.1;locus_tag=NDY25_02575;product=PhzF family phenazine biosynthesis protein;protein_id=UUF02954.1;transl_table=11 CP098604.1 Genbank gene 591876 592757 . + . ID=gene-NDY25_02580;Name=NDY25_02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02580 CP098604.1 Protein Homology CDS 591876 592757 . + 0 ID=cds-UUF02955.1;Parent=gene-NDY25_02580;Dbxref=NCBI_GP:UUF02955.1;Name=UUF02955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369373.1;locus_tag=NDY25_02580;product=PhzF family phenazine biosynthesis protein;protein_id=UUF02955.1;transl_table=11 CP098604.1 Genbank gene 592921 593523 . - . ID=gene-NDY25_02585;Name=NDY25_02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02585 CP098604.1 Protein Homology CDS 592921 593523 . - 0 ID=cds-UUF02956.1;Parent=gene-NDY25_02585;Dbxref=NCBI_GP:UUF02956.1;Name=UUF02956.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472432.1;locus_tag=NDY25_02585;product=glycine zipper 2TM domain-containing protein;protein_id=UUF02956.1;transl_table=11 CP098604.1 Genbank gene 593676 594110 . - . ID=gene-NDY25_02590;Name=NDY25_02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02590 CP098604.1 Protein Homology CDS 593676 594110 . - 0 ID=cds-UUF02957.1;Parent=gene-NDY25_02590;Dbxref=NCBI_GP:UUF02957.1;Name=UUF02957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159920.1;locus_tag=NDY25_02590;product=OsmC family protein;protein_id=UUF02957.1;transl_table=11 CP098604.1 Genbank gene 594328 595275 . - . ID=gene-NDY25_02595;Name=NDY25_02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02595 CP098604.1 Protein Homology CDS 594328 595275 . - 0 ID=cds-UUF02958.1;Parent=gene-NDY25_02595;Dbxref=NCBI_GP:UUF02958.1;Name=UUF02958.1;Ontology_term=GO:0006207,GO:0006520,GO:0004070,GO:0016597;gbkey=CDS;go_function=aspartate carbamoyltransferase activity|0004070||IEA,amino acid binding|0016597||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,cellular amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913284.1;locus_tag=NDY25_02595;product=aspartate carbamoyltransferase catalytic subunit;protein_id=UUF02958.1;transl_table=11 CP098604.1 Genbank gene 595292 595759 . - . ID=gene-NDY25_02600;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=NDY25_02600 CP098604.1 Protein Homology CDS 595292 595759 . - 0 ID=cds-UUF02959.1;Parent=gene-NDY25_02600;Dbxref=NCBI_GP:UUF02959.1;Name=UUF02959.1;Ontology_term=GO:0008150,GO:0003674,GO:0005737;gbkey=CDS;gene=ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302529.1;locus_tag=NDY25_02600;product=Holliday junction resolvase RuvX;protein_id=UUF02959.1;transl_table=11 CP098604.1 Genbank gene 595752 596318 . - . ID=gene-NDY25_02605;Name=NDY25_02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02605 CP098604.1 Protein Homology CDS 595752 596318 . - 0 ID=cds-UUF02960.1;Parent=gene-NDY25_02605;Dbxref=NCBI_GP:UUF02960.1;Name=UUF02960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802054.1;locus_tag=NDY25_02605;product=YqgE/AlgH family protein;protein_id=UUF02960.1;transl_table=11 CP098604.1 Genbank gene 596616 597161 . + . ID=gene-NDY25_02610;Name=NDY25_02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02610 CP098604.1 Protein Homology CDS 596616 597161 . + 0 ID=cds-UUF02961.1;Parent=gene-NDY25_02610;Dbxref=NCBI_GP:UUF02961.1;Name=UUF02961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448882.1;locus_tag=NDY25_02610;product=DNA-3-methyladenine glycosylase I;protein_id=UUF02961.1;transl_table=11 CP098604.1 Genbank gene 597299 597973 . - . ID=gene-NDY25_02615;Name=NDY25_02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02615 CP098604.1 Protein Homology CDS 597299 597973 . - 0 ID=cds-UUF04504.1;Parent=gene-NDY25_02615;Dbxref=NCBI_GP:UUF04504.1;Name=UUF04504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851096.1;locus_tag=NDY25_02615;product=YitT family protein;protein_id=UUF04504.1;transl_table=11 CP098604.1 Genbank gene 598274 599404 . - . ID=gene-NDY25_02620;Name=NDY25_02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02620 CP098604.1 Protein Homology CDS 598274 599404 . - 0 ID=cds-UUF02962.1;Parent=gene-NDY25_02620;Dbxref=NCBI_GP:UUF02962.1;Name=UUF02962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489921.1;locus_tag=NDY25_02620;product=PilT/PilU family type 4a pilus ATPase;protein_id=UUF02962.1;transl_table=11 CP098604.1 Genbank gene 599527 600564 . - . ID=gene-NDY25_02625;Name=NDY25_02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02625 CP098604.1 Protein Homology CDS 599527 600564 . - 0 ID=cds-UUF02963.1;Parent=gene-NDY25_02625;Dbxref=NCBI_GP:UUF02963.1;Name=UUF02963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185385.1;locus_tag=NDY25_02625;product=type IV pilus twitching motility protein PilT;protein_id=UUF02963.1;transl_table=11 CP098604.1 Genbank gene 600889 601581 . + . ID=gene-NDY25_02630;Name=NDY25_02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02630 CP098604.1 Protein Homology CDS 600889 601581 . + 0 ID=cds-UUF02964.1;Parent=gene-NDY25_02630;Dbxref=NCBI_GP:UUF02964.1;Name=UUF02964.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157671.1;locus_tag=NDY25_02630;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=UUF02964.1;transl_table=11 CP098604.1 Genbank gene 601629 602483 . + . ID=gene-NDY25_02635;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=NDY25_02635 CP098604.1 Protein Homology CDS 601629 602483 . + 0 ID=cds-UUF02965.1;Parent=gene-NDY25_02635;Dbxref=NCBI_GP:UUF02965.1;Name=UUF02965.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502533.1;locus_tag=NDY25_02635;product=pyrroline-5-carboxylate reductase;protein_id=UUF02965.1;transl_table=11 CP098604.1 Genbank gene 602921 603346 . + . ID=gene-NDY25_02640;Name=NDY25_02640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02640 CP098604.1 Protein Homology CDS 602921 603346 . + 0 ID=cds-UUF02966.1;Parent=gene-NDY25_02640;Dbxref=NCBI_GP:UUF02966.1;Name=UUF02966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502532.1;locus_tag=NDY25_02640;product=HU family DNA-binding protein;protein_id=UUF02966.1;transl_table=11 CP098604.1 Genbank gene 603486 604100 . + . ID=gene-NDY25_02645;Name=NDY25_02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02645 CP098604.1 Protein Homology CDS 603486 604100 . + 0 ID=cds-UUF02967.1;Parent=gene-NDY25_02645;Dbxref=NCBI_GP:UUF02967.1;Name=UUF02967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157674.1;locus_tag=NDY25_02645;product=M23 family metallopeptidase;protein_id=UUF02967.1;transl_table=11 CP098604.1 Genbank gene 604192 604500 . + . ID=gene-NDY25_02650;Name=NDY25_02650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02650 CP098604.1 Protein Homology CDS 604192 604500 . + 0 ID=cds-UUF02968.1;Parent=gene-NDY25_02650;Dbxref=NCBI_GP:UUF02968.1;Name=UUF02968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090669.1;locus_tag=NDY25_02650;product=DUF3861 domain-containing protein;protein_id=UUF02968.1;transl_table=11 CP098604.1 Genbank gene 604721 605107 . + . ID=gene-NDY25_02655;Name=NDY25_02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02655 CP098604.1 Protein Homology CDS 604721 605107 . + 0 ID=cds-UUF04505.1;Parent=gene-NDY25_02655;Dbxref=NCBI_GP:UUF04505.1;Name=UUF04505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448892.1;locus_tag=NDY25_02655;product=hypothetical protein;protein_id=UUF04505.1;transl_table=11 CP098604.1 Genbank gene 605163 605759 . + . ID=gene-NDY25_02660;Name=NDY25_02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02660 CP098604.1 Protein Homology CDS 605163 605759 . + 0 ID=cds-UUF02969.1;Parent=gene-NDY25_02660;Dbxref=NCBI_GP:UUF02969.1;Name=UUF02969.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487749.1;locus_tag=NDY25_02660;product=DUF1439 domain-containing protein;protein_id=UUF02969.1;transl_table=11 CP098604.1 Genbank gene 606029 606496 . - . ID=gene-NDY25_02665;Name=NDY25_02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02665 CP098604.1 Protein Homology CDS 606029 606496 . - 0 ID=cds-UUF02970.1;Parent=gene-NDY25_02665;Dbxref=NCBI_GP:UUF02970.1;Name=UUF02970.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237451.1;locus_tag=NDY25_02665;product=SET domain-containing protein-lysine N-methyltransferase;protein_id=UUF02970.1;transl_table=11 CP098604.1 Genbank gene 606673 607131 . + . ID=gene-NDY25_02670;Name=NDY25_02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02670 CP098604.1 Protein Homology CDS 606673 607131 . + 0 ID=cds-UUF02971.1;Parent=gene-NDY25_02670;Dbxref=NCBI_GP:UUF02971.1;Name=UUF02971.1;Ontology_term=GO:0006355,GO:0016226;gbkey=CDS;go_process=regulation of transcription%2C DNA-templated|0006355||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369303.1;locus_tag=NDY25_02670;product=SUF system Fe-S cluster assembly regulator;protein_id=UUF02971.1;transl_table=11 CP098604.1 Genbank gene 607147 608604 . + . ID=gene-NDY25_02675;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=NDY25_02675 CP098604.1 Protein Homology CDS 607147 608604 . + 0 ID=cds-UUF02972.1;Parent=gene-NDY25_02675;Dbxref=NCBI_GP:UUF02972.1;Name=UUF02972.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902344.1;locus_tag=NDY25_02675;product=Fe-S cluster assembly protein SufB;protein_id=UUF02972.1;transl_table=11 CP098604.1 Genbank gene 608761 609525 . + . ID=gene-NDY25_02680;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=NDY25_02680 CP098604.1 Protein Homology CDS 608761 609525 . + 0 ID=cds-UUF02973.1;Parent=gene-NDY25_02680;Dbxref=NCBI_GP:UUF02973.1;Name=UUF02973.1;Ontology_term=GO:0016226,GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157680.1;locus_tag=NDY25_02680;product=Fe-S cluster assembly ATPase SufC;protein_id=UUF02973.1;transl_table=11 CP098604.1 Genbank gene 609525 610787 . + . ID=gene-NDY25_02685;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=NDY25_02685 CP098604.1 Protein Homology CDS 609525 610787 . + 0 ID=cds-UUF02974.1;Parent=gene-NDY25_02685;Dbxref=NCBI_GP:UUF02974.1;Name=UUF02974.1;Ontology_term=GO:0016226,GO:0005198;gbkey=CDS;gene=sufD;go_function=structural molecule activity|0005198||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090672.1;locus_tag=NDY25_02685;product=Fe-S cluster assembly protein SufD;protein_id=UUF02974.1;transl_table=11 CP098604.1 Genbank gene 610784 612028 . + . ID=gene-NDY25_02690;Name=NDY25_02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02690 CP098604.1 Protein Homology CDS 610784 612028 . + 0 ID=cds-UUF02975.1;Parent=gene-NDY25_02690;Dbxref=NCBI_GP:UUF02975.1;Name=UUF02975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051933.1;locus_tag=NDY25_02690;product=cysteine desulfurase;protein_id=UUF02975.1;transl_table=11 CP098604.1 Genbank gene 612234 612773 . + . ID=gene-NDY25_02695;Name=NDY25_02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02695 CP098604.1 Protein Homology CDS 612234 612773 . + 0 ID=cds-UUF02976.1;Parent=gene-NDY25_02695;Dbxref=NCBI_GP:UUF02976.1;Name=UUF02976.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508447.1;locus_tag=NDY25_02695;product=GNAT family N-acetyltransferase;protein_id=UUF02976.1;transl_table=11 CP098604.1 Genbank gene 612770 613099 . + . ID=gene-NDY25_02700;Name=NDY25_02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02700 CP098604.1 Protein Homology CDS 612770 613099 . + 0 ID=cds-UUF02977.1;Parent=gene-NDY25_02700;Dbxref=NCBI_GP:UUF02977.1;Name=UUF02977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508448.1;locus_tag=NDY25_02700;product=non-heme iron oxygenase ferredoxin subunit;protein_id=UUF02977.1;transl_table=11 CP098604.1 Genbank gene 614015 616333 . + . ID=gene-NDY25_02705;Name=NDY25_02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02705 CP098604.1 Protein Homology CDS 614015 616333 . + 0 ID=cds-UUF02978.1;Parent=gene-NDY25_02705;Dbxref=NCBI_GP:UUF02978.1;Name=UUF02978.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802080.1;locus_tag=NDY25_02705;product=TonB-dependent siderophore receptor;protein_id=UUF02978.1;transl_table=11 CP098604.1 Genbank gene 616382 617068 . + . ID=gene-NDY25_02710;Name=NDY25_02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02710 CP098604.1 Protein Homology CDS 616382 617068 . + 0 ID=cds-UUF02979.1;Parent=gene-NDY25_02710;Dbxref=NCBI_GP:UUF02979.1;Name=UUF02979.1;Ontology_term=GO:0005506,GO:0016706,GO:0031418;gbkey=CDS;go_function=iron ion binding|0005506||IEA,2-oxoglutarate-dependent dioxygenase activity|0016706||IEA,L-ascorbic acid binding|0031418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037901.1;locus_tag=NDY25_02710;product=Fe2+-dependent dioxygenase;protein_id=UUF02979.1;transl_table=11 CP098604.1 Genbank gene 617061 617819 . + . ID=gene-NDY25_02715;Name=NDY25_02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02715 CP098604.1 Protein Homology CDS 617061 617819 . + 0 ID=cds-UUF02980.1;Parent=gene-NDY25_02715;Dbxref=NCBI_GP:UUF02980.1;Name=UUF02980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450674.1;locus_tag=NDY25_02715;product=sel1 repeat family protein;protein_id=UUF02980.1;transl_table=11 CP098604.1 Genbank gene 617827 618465 . + . ID=gene-NDY25_02720;Name=NDY25_02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02720 CP098604.1 Protein Homology CDS 617827 618465 . + 0 ID=cds-UUF02981.1;Parent=gene-NDY25_02720;Dbxref=NCBI_GP:UUF02981.1;Name=UUF02981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487779.1;locus_tag=NDY25_02720;product=PepSY-associated TM helix domain-containing protein;protein_id=UUF02981.1;transl_table=11 CP098604.1 Genbank gene 618487 619002 . + . ID=gene-NDY25_02725;Name=NDY25_02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02725 CP098604.1 Protein Homology CDS 618487 619002 . + 0 ID=cds-UUF02982.1;Parent=gene-NDY25_02725;Dbxref=NCBI_GP:UUF02982.1;Name=UUF02982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163219.1;locus_tag=NDY25_02725;product=DUF2271 domain-containing protein;protein_id=UUF02982.1;transl_table=11 CP098604.1 Genbank gene 619209 619985 . + . ID=gene-NDY25_02730;Name=NDY25_02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02730 CP098604.1 Protein Homology CDS 619209 619985 . + 0 ID=cds-UUF02983.1;Parent=gene-NDY25_02730;Dbxref=NCBI_GP:UUF02983.1;Name=UUF02983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010893120.1;locus_tag=NDY25_02730;product=DUF4198 domain-containing protein;protein_id=UUF02983.1;transl_table=11 CP098604.1 Genbank gene 620053 621027 . + . ID=gene-NDY25_02735;Name=NDY25_02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02735 CP098604.1 Protein Homology CDS 620053 621027 . + 0 ID=cds-UUF02984.1;Parent=gene-NDY25_02735;Dbxref=NCBI_GP:UUF02984.1;Name=UUF02984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157691.1;locus_tag=NDY25_02735;product=FAD:protein FMN transferase;protein_id=UUF02984.1;transl_table=11 CP098604.1 Genbank pseudogene 621024 622755 . + . ID=gene-NDY25_02740;Name=NDY25_02740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02740;pseudo=true CP098604.1 Protein Homology CDS 621024 622755 . + 0 ID=cds-NDY25_02740;Parent=gene-NDY25_02740;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450669.1;locus_tag=NDY25_02740;product=sulfite reductase flavoprotein subunit alpha;pseudo=true;transl_table=11 CP098604.1 Genbank gene 623380 624120 . - . ID=gene-NDY25_02745;Name=NDY25_02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02745 CP098604.1 Protein Homology CDS 623380 624120 . - 0 ID=cds-UUF02985.1;Parent=gene-NDY25_02745;Dbxref=NCBI_GP:UUF02985.1;Name=UUF02985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913329.1;locus_tag=NDY25_02745;product=HutD family protein;protein_id=UUF02985.1;transl_table=11 CP098604.1 Genbank gene 624479 624886 . - . ID=gene-NDY25_02750;Name=NDY25_02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02750 CP098604.1 Protein Homology CDS 624479 624886 . - 0 ID=cds-UUF02986.1;Parent=gene-NDY25_02750;Dbxref=NCBI_GP:UUF02986.1;Name=UUF02986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157693.1;locus_tag=NDY25_02750;product=helix-hairpin-helix domain-containing protein;protein_id=UUF02986.1;transl_table=11 CP098604.1 Genbank gene 625033 626526 . + . ID=gene-NDY25_02755;Name=NDY25_02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02755 CP098604.1 Protein Homology CDS 625033 626526 . + 0 ID=cds-UUF02987.1;Parent=gene-NDY25_02755;Dbxref=NCBI_GP:UUF02987.1;Name=UUF02987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051939.1;locus_tag=NDY25_02755;product=M20 family metallopeptidase;protein_id=UUF02987.1;transl_table=11 CP098604.1 Genbank gene 626756 627028 . + . ID=gene-NDY25_02760;Name=NDY25_02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02760 CP098604.1 Protein Homology CDS 626756 627028 . + 0 ID=cds-UUF02988.1;Parent=gene-NDY25_02760;Dbxref=NCBI_GP:UUF02988.1;Name=UUF02988.1;Ontology_term=GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157695.1;locus_tag=NDY25_02760;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=UUF02988.1;transl_table=11 CP098604.1 Genbank gene 627050 628105 . + . ID=gene-NDY25_02765;Name=NDY25_02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02765 CP098604.1 Protein Homology CDS 627050 628105 . + 0 ID=cds-UUF02989.1;Parent=gene-NDY25_02765;Dbxref=NCBI_GP:UUF02989.1;Name=UUF02989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157696.1;locus_tag=NDY25_02765;product=phosphotransferase;protein_id=UUF02989.1;transl_table=11 CP098604.1 Genbank pseudogene 628102 628810 . + . ID=gene-NDY25_02770;Name=NDY25_02770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_02770;pseudo=true CP098604.1 Protein Homology CDS 628102 628810 . + 0 ID=cds-NDY25_02770;Parent=gene-NDY25_02770;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369254.1;locus_tag=NDY25_02770;product=nucleotidyltransferase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 629002 629765 . + . ID=gene-NDY25_02775;Name=NDY25_02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02775 CP098604.1 Protein Homology CDS 629002 629317 . + 0 ID=cds-UUF04506.1;Parent=gene-NDY25_02775;Dbxref=NCBI_GP:UUF04506.1;Name=UUF04506.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_02775;product=IS5 family transposase;protein_id=UUF04506.1;transl_table=11 CP098604.1 Protein Homology CDS 629317 629765 . + 2 ID=cds-UUF04506.1;Parent=gene-NDY25_02775;Dbxref=NCBI_GP:UUF04506.1;Name=UUF04506.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_02775;product=IS5 family transposase;protein_id=UUF04506.1;transl_table=11 CP098604.1 Genbank gene 630002 631135 . + . ID=gene-NDY25_02780;Name=NDY25_02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02780 CP098604.1 Protein Homology CDS 630002 631135 . + 0 ID=cds-UUF02990.1;Parent=gene-NDY25_02780;Dbxref=NCBI_GP:UUF02990.1;Name=UUF02990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911798.1;locus_tag=NDY25_02780;product=phospholipase A;protein_id=UUF02990.1;transl_table=11 CP098604.1 Genbank gene 631306 632418 . + . ID=gene-NDY25_02785;Name=NDY25_02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02785 CP098604.1 Protein Homology CDS 631306 632418 . + 0 ID=cds-UUF02991.1;Parent=gene-NDY25_02785;Dbxref=NCBI_GP:UUF02991.1;Name=UUF02991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451913.1;locus_tag=NDY25_02785;product=sterol desaturase family protein;protein_id=UUF02991.1;transl_table=11 CP098604.1 Genbank gene 632878 633516 . - . ID=gene-NDY25_02790;Name=NDY25_02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02790 CP098604.1 Protein Homology CDS 632878 633516 . - 0 ID=cds-UUF04507.1;Parent=gene-NDY25_02790;Dbxref=NCBI_GP:UUF04507.1;Name=UUF04507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155731.1;locus_tag=NDY25_02790;product=carbonic anhydrase;protein_id=UUF04507.1;transl_table=11 CP098604.1 Genbank gene 633704 634339 . - . ID=gene-NDY25_02795;Name=NDY25_02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02795 CP098604.1 Protein Homology CDS 633704 634339 . - 0 ID=cds-UUF02992.1;Parent=gene-NDY25_02795;Dbxref=NCBI_GP:UUF02992.1;Name=UUF02992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483541.1;locus_tag=NDY25_02795;product=glutathione S-transferase family protein;protein_id=UUF02992.1;transl_table=11 CP098604.1 Genbank gene 634975 636492 . - . ID=gene-NDY25_02800;Name=NDY25_02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02800 CP098604.1 Protein Homology CDS 634975 636492 . - 0 ID=cds-UUF02993.1;Parent=gene-NDY25_02800;Dbxref=NCBI_GP:UUF02993.1;Name=UUF02993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483539.1;locus_tag=NDY25_02800;product=fumarate hydratase;protein_id=UUF02993.1;transl_table=11 CP098604.1 Genbank gene 636757 638637 . + . ID=gene-NDY25_02805;Name=NDY25_02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02805 CP098604.1 Protein Homology CDS 636757 638637 . + 0 ID=cds-UUF02994.1;Parent=gene-NDY25_02805;Dbxref=NCBI_GP:UUF02994.1;Name=UUF02994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911790.1;locus_tag=NDY25_02805;product=ABC transporter ATP-binding protein/permease;protein_id=UUF02994.1;transl_table=11 CP098604.1 Genbank gene 638868 639647 . + . ID=gene-NDY25_02810;Name=NDY25_02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02810 CP098604.1 Protein Homology CDS 638868 639647 . + 0 ID=cds-UUF02995.1;Parent=gene-NDY25_02810;Dbxref=NCBI_GP:UUF02995.1;Name=UUF02995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966679.1;locus_tag=NDY25_02810;product=ferredoxin--NADP reductase;protein_id=UUF02995.1;transl_table=11 CP098604.1 Genbank gene 639810 640295 . - . ID=gene-NDY25_02815;Name=NDY25_02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02815 CP098604.1 Protein Homology CDS 639810 640295 . - 0 ID=cds-UUF02996.1;Parent=gene-NDY25_02815;Dbxref=NCBI_GP:UUF02996.1;Name=UUF02996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438789.1;locus_tag=NDY25_02815;product=glutathione peroxidase;protein_id=UUF02996.1;transl_table=11 CP098604.1 Genbank gene 640792 642990 . + . ID=gene-NDY25_02820;Name=NDY25_02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02820 CP098604.1 Protein Homology CDS 640792 642990 . + 0 ID=cds-UUF02997.1;Parent=gene-NDY25_02820;Dbxref=NCBI_GP:UUF02997.1;Name=UUF02997.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237816.1;locus_tag=NDY25_02820;product=M3 family metallopeptidase;protein_id=UUF02997.1;transl_table=11 CP098604.1 Genbank gene 643084 643584 . - . ID=gene-NDY25_02825;Name=NDY25_02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02825 CP098604.1 Protein Homology CDS 643084 643584 . - 0 ID=cds-UUF02998.1;Parent=gene-NDY25_02825;Dbxref=NCBI_GP:UUF02998.1;Name=UUF02998.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571407.1;locus_tag=NDY25_02825;product=MarR family transcriptional regulator;protein_id=UUF02998.1;transl_table=11 CP098604.1 Genbank gene 643651 644496 . - . ID=gene-NDY25_02830;Name=NDY25_02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02830 CP098604.1 Protein Homology CDS 643651 644496 . - 0 ID=cds-UUF02999.1;Parent=gene-NDY25_02830;Dbxref=NCBI_GP:UUF02999.1;Name=UUF02999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089774.1;locus_tag=NDY25_02830;product=DUF3298 and DUF4163 domain-containing protein;protein_id=UUF02999.1;transl_table=11 CP098604.1 Genbank gene 644546 644833 . - . ID=gene-NDY25_02835;Name=NDY25_02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02835 CP098604.1 Protein Homology CDS 644546 644833 . - 0 ID=cds-UUF04508.1;Parent=gene-NDY25_02835;Dbxref=NCBI_GP:UUF04508.1;Name=UUF04508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483523.1;locus_tag=NDY25_02835;product=N-acetyltransferase;protein_id=UUF04508.1;transl_table=11 CP098604.1 Genbank gene 645061 645249 . + . ID=gene-NDY25_02840;Name=NDY25_02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02840 CP098604.1 Protein Homology CDS 645061 645249 . + 0 ID=cds-UUF03000.1;Parent=gene-NDY25_02840;Dbxref=NCBI_GP:UUF03000.1;Name=UUF03000.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483521.1;locus_tag=NDY25_02840;product=hypothetical protein;protein_id=UUF03000.1;transl_table=11 CP098604.1 Genbank gene 645397 646005 . - . ID=gene-NDY25_02845;Name=NDY25_02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02845 CP098604.1 Protein Homology CDS 645397 646005 . - 0 ID=cds-UUF03001.1;Parent=gene-NDY25_02845;Dbxref=NCBI_GP:UUF03001.1;Name=UUF03001.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300253.1;locus_tag=NDY25_02845;product=rhomboid family intramembrane serine protease;protein_id=UUF03001.1;transl_table=11 CP098604.1 Genbank gene 646013 647578 . - . ID=gene-NDY25_02850;Name=NDY25_02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02850 CP098604.1 Protein Homology CDS 646013 647578 . - 0 ID=cds-UUF03002.1;Parent=gene-NDY25_02850;Dbxref=NCBI_GP:UUF03002.1;Name=UUF03002.1;Ontology_term=GO:0015833,GO:0015333,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=peptide:proton symporter activity|0015333||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050921.1;locus_tag=NDY25_02850;product=oligopeptide:H+ symporter;protein_id=UUF03002.1;transl_table=11 CP098604.1 Genbank gene 647875 649644 . + . ID=gene-NDY25_02855;Name=NDY25_02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02855 CP098604.1 Protein Homology CDS 647875 649644 . + 0 ID=cds-UUF03003.1;Parent=gene-NDY25_02855;Dbxref=NCBI_GP:UUF03003.1;Name=UUF03003.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160291.1;locus_tag=NDY25_02855;product=M14 family metallopeptidase;protein_id=UUF03003.1;transl_table=11 CP098604.1 Genbank gene 649768 652005 . + . ID=gene-NDY25_02860;Name=NDY25_02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02860 CP098604.1 Protein Homology CDS 649768 652005 . + 0 ID=cds-UUF04509.1;Parent=gene-NDY25_02860;Dbxref=NCBI_GP:UUF04509.1;Name=UUF04509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050919.1;locus_tag=NDY25_02860;product=beta-glucosidase;protein_id=UUF04509.1;transl_table=11 CP098604.1 Genbank gene 652148 652234 . + . ID=gene-NDY25_02865;Name=NDY25_02865;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_02865 CP098604.1 tRNAscan-SE tRNA 652148 652234 . + . ID=rna-NDY25_02865;Parent=gene-NDY25_02865;anticodon=(pos:652182..652184);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_02865;product=tRNA-Leu CP098604.1 tRNAscan-SE exon 652148 652234 . + . ID=exon-NDY25_02865-1;Parent=rna-NDY25_02865;anticodon=(pos:652182..652184);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_02865;product=tRNA-Leu CP098604.1 Genbank gene 652298 652870 . + . ID=gene-NDY25_02870;Name=NDY25_02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02870 CP098604.1 Protein Homology CDS 652298 652870 . + 0 ID=cds-UUF03004.1;Parent=gene-NDY25_02870;Dbxref=NCBI_GP:UUF03004.1;Name=UUF03004.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022551.2;locus_tag=NDY25_02870;product=YggN family protein;protein_id=UUF03004.1;transl_table=11 CP098604.1 Genbank gene 653201 654781 . - . ID=gene-NDY25_02875;Name=NDY25_02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02875 CP098604.1 Protein Homology CDS 653201 654781 . - 0 ID=cds-UUF03005.1;Parent=gene-NDY25_02875;Dbxref=NCBI_GP:UUF03005.1;Name=UUF03005.1;Ontology_term=GO:0006855,GO:0009410,GO:0005887;gbkey=CDS;go_component=integral component of plasma membrane|0005887||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919973.1;locus_tag=NDY25_02875;product=DHA2 family efflux MFS transporter permease subunit;protein_id=UUF03005.1;transl_table=11 CP098604.1 Genbank gene 654788 655981 . - . ID=gene-NDY25_02880;Name=NDY25_02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02880 CP098604.1 Protein Homology CDS 654788 655981 . - 0 ID=cds-UUF03006.1;Parent=gene-NDY25_02880;Dbxref=NCBI_GP:UUF03006.1;Name=UUF03006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168701.1;locus_tag=NDY25_02880;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF03006.1;transl_table=11 CP098604.1 Genbank gene 655992 657479 . - . ID=gene-NDY25_02885;Name=NDY25_02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02885 CP098604.1 Protein Homology CDS 655992 657479 . - 0 ID=cds-UUF04510.1;Parent=gene-NDY25_02885;Dbxref=NCBI_GP:UUF04510.1;Name=UUF04510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155713.1;locus_tag=NDY25_02885;product=AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor;protein_id=UUF04510.1;transl_table=11 CP098604.1 Genbank gene 657503 657943 . - . ID=gene-NDY25_02890;Name=NDY25_02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02890 CP098604.1 Protein Homology CDS 657503 657943 . - 0 ID=cds-UUF03007.1;Parent=gene-NDY25_02890;Dbxref=NCBI_GP:UUF03007.1;Name=UUF03007.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089765.1;locus_tag=NDY25_02890;product=MarR family transcriptional regulator;protein_id=UUF03007.1;transl_table=11 CP098604.1 Genbank gene 658067 658918 . + . ID=gene-NDY25_02895;Name=NDY25_02895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02895 CP098604.1 Protein Homology CDS 658067 658918 . + 0 ID=cds-UUF03008.1;Parent=gene-NDY25_02895;Dbxref=NCBI_GP:UUF03008.1;Name=UUF03008.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463002.1;locus_tag=NDY25_02895;product=helix-turn-helix transcriptional regulator;protein_id=UUF03008.1;transl_table=11 CP098604.1 Genbank gene 658981 661224 . + . ID=gene-NDY25_02900;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=NDY25_02900 CP098604.1 Protein Homology CDS 658981 661224 . + 0 ID=cds-UUF03009.1;Parent=gene-NDY25_02900;Dbxref=NCBI_GP:UUF03009.1;Name=UUF03009.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483492.1;locus_tag=NDY25_02900;product=DNA topoisomerase IV subunit A;protein_id=UUF03009.1;transl_table=11 CP098604.1 Genbank gene 661659 662315 . + . ID=gene-NDY25_02905;Name=NDY25_02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02905 CP098604.1 Protein Homology CDS 661659 662315 . + 0 ID=cds-UUF03010.1;Parent=gene-NDY25_02905;Dbxref=NCBI_GP:UUF03010.1;Name=UUF03010.1;Ontology_term=GO:0010038,GO:0008119;gbkey=CDS;go_function=thiopurine S-methyltransferase activity|0008119||IEA;go_process=response to metal ion|0010038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036586.1;locus_tag=NDY25_02905;product=thiopurine S-methyltransferase;protein_id=UUF03010.1;transl_table=11 CP098604.1 Genbank gene 662597 663082 . - . ID=gene-NDY25_02910;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=NDY25_02910 CP098604.1 Protein Homology CDS 662597 663082 . - 0 ID=cds-UUF03011.1;Parent=gene-NDY25_02910;Dbxref=NCBI_GP:UUF03011.1;Name=UUF03011.1;Ontology_term=GO:0006880,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular sequestering of iron ion|0006880||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911751.1;locus_tag=NDY25_02910;product=bacterioferritin;protein_id=UUF03011.1;transl_table=11 CP098604.1 Genbank gene 663228 665636 . + . ID=gene-NDY25_02915;Name=NDY25_02915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02915 CP098604.1 Protein Homology CDS 663228 665636 . + 0 ID=cds-UUF03012.1;Parent=gene-NDY25_02915;Dbxref=NCBI_GP:UUF03012.1;Name=UUF03012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450829.1;locus_tag=NDY25_02915;product=penicillin acylase family protein;protein_id=UUF03012.1;transl_table=11 CP098604.1 Genbank gene 666096 668237 . + . ID=gene-NDY25_02920;Name=NDY25_02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02920 CP098604.1 Protein Homology CDS 666096 668237 . + 0 ID=cds-UUF03013.1;Parent=gene-NDY25_02920;Dbxref=NCBI_GP:UUF03013.1;Name=UUF03013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925026.1;locus_tag=NDY25_02920;product=TonB-dependent receptor;protein_id=UUF03013.1;transl_table=11 CP098604.1 Genbank gene 668481 669530 . + . ID=gene-NDY25_02925;Name=NDY25_02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02925 CP098604.1 Protein Homology CDS 668481 669530 . + 0 ID=cds-UUF03014.1;Parent=gene-NDY25_02925;Dbxref=NCBI_GP:UUF03014.1;Name=UUF03014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507255.1;locus_tag=NDY25_02925;product=right-handed parallel beta-helix repeat-containing protein;protein_id=UUF03014.1;transl_table=11 CP098604.1 Genbank gene 669588 671282 . - . ID=gene-NDY25_02930;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=NDY25_02930 CP098604.1 Protein Homology CDS 669588 671282 . - 0 ID=cds-UUF03015.1;Parent=gene-NDY25_02930;Dbxref=NCBI_GP:UUF03015.1;Name=UUF03015.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988264.1;locus_tag=NDY25_02930;product=asparagine synthase B;protein_id=UUF03015.1;transl_table=11 CP098604.1 Genbank gene 671641 672513 . + . ID=gene-NDY25_02935;Name=NDY25_02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02935 CP098604.1 Protein Homology CDS 671641 672513 . + 0 ID=cds-UUF03016.1;Parent=gene-NDY25_02935;Dbxref=NCBI_GP:UUF03016.1;Name=UUF03016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944180.1;locus_tag=NDY25_02935;product=sel1 repeat family protein;protein_id=UUF03016.1;transl_table=11 CP098604.1 Genbank gene 672708 673835 . - . ID=gene-NDY25_02940;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=NDY25_02940 CP098604.1 Protein Homology CDS 672708 673835 . - 0 ID=cds-UUF03017.1;Parent=gene-NDY25_02940;Dbxref=NCBI_GP:UUF03017.1;Name=UUF03017.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346903.1;locus_tag=NDY25_02940;product=succinyl-diaminopimelate desuccinylase;protein_id=UUF03017.1;transl_table=11 CP098604.1 Genbank gene 673880 674236 . - . ID=gene-NDY25_02945;Name=NDY25_02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02945 CP098604.1 Protein Homology CDS 673880 674236 . - 0 ID=cds-UUF03018.1;Parent=gene-NDY25_02945;Dbxref=NCBI_GP:UUF03018.1;Name=UUF03018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017912256.1;locus_tag=NDY25_02945;product=arsenate reductase;protein_id=UUF03018.1;transl_table=11 CP098604.1 Genbank gene 674238 674708 . - . ID=gene-NDY25_02950;Name=NDY25_02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02950 CP098604.1 Protein Homology CDS 674238 674708 . - 0 ID=cds-UUF03019.1;Parent=gene-NDY25_02950;Dbxref=NCBI_GP:UUF03019.1;Name=UUF03019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450835.1;locus_tag=NDY25_02950;product=hypothetical protein;protein_id=UUF03019.1;transl_table=11 CP098604.1 Genbank gene 674705 675877 . - . ID=gene-NDY25_02955;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=NDY25_02955 CP098604.1 Protein Homology CDS 674705 675877 . - 0 ID=cds-UUF03020.1;Parent=gene-NDY25_02955;Dbxref=NCBI_GP:UUF03020.1;Name=UUF03020.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576699.1;locus_tag=NDY25_02955;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=UUF03020.1;transl_table=11 CP098604.1 Genbank gene 675894 678503 . - . ID=gene-NDY25_02960;Name=NDY25_02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02960 CP098604.1 Protein Homology CDS 675894 678503 . - 0 ID=cds-UUF03021.1;Parent=gene-NDY25_02960;Dbxref=NCBI_GP:UUF03021.1;Name=UUF03021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810763.1;locus_tag=NDY25_02960;product=[protein-PII] uridylyltransferase;protein_id=UUF03021.1;transl_table=11 CP098604.1 Genbank gene 678500 679276 . - . ID=gene-NDY25_02965;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=NDY25_02965 CP098604.1 Protein Homology CDS 678500 679276 . - 0 ID=cds-UUF03022.1;Parent=gene-NDY25_02965;Dbxref=NCBI_GP:UUF03022.1;Name=UUF03022.1;Ontology_term=GO:0006464;gbkey=CDS;gene=map;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366184.1;locus_tag=NDY25_02965;product=type I methionyl aminopeptidase;protein_id=UUF03022.1;transl_table=11 CP098604.1 Genbank gene 679567 680118 . + . ID=gene-NDY25_02970;Name=NDY25_02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02970 CP098604.1 Protein Homology CDS 679567 680118 . + 0 ID=cds-UUF03023.1;Parent=gene-NDY25_02970;Dbxref=NCBI_GP:UUF03023.1;Name=UUF03023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576696.1;locus_tag=NDY25_02970;product=spore coat U domain-containing protein;protein_id=UUF03023.1;transl_table=11 CP098604.1 Genbank gene 680127 680897 . + . ID=gene-NDY25_02975;Name=NDY25_02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02975 CP098604.1 Protein Homology CDS 680127 680897 . + 0 ID=cds-UUF03024.1;Parent=gene-NDY25_02975;Dbxref=NCBI_GP:UUF03024.1;Name=UUF03024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089755.1;locus_tag=NDY25_02975;product=molecular chaperone;protein_id=UUF03024.1;transl_table=11 CP098604.1 Genbank gene 680914 683265 . + . ID=gene-NDY25_02980;Name=NDY25_02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02980 CP098604.1 Protein Homology CDS 680914 683265 . + 0 ID=cds-UUF03025.1;Parent=gene-NDY25_02980;Dbxref=NCBI_GP:UUF03025.1;Name=UUF03025.1;Ontology_term=GO:0009297,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169461.1;locus_tag=NDY25_02980;product=fimbria/pilus outer membrane usher protein;protein_id=UUF03025.1;transl_table=11 CP098604.1 Genbank gene 683262 684305 . + . ID=gene-NDY25_02985;Name=NDY25_02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02985 CP098604.1 Protein Homology CDS 683262 684305 . + 0 ID=cds-UUF03026.1;Parent=gene-NDY25_02985;Dbxref=NCBI_GP:UUF03026.1;Name=UUF03026.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036570.1;locus_tag=NDY25_02985;product=spore coat U domain-containing protein;protein_id=UUF03026.1;transl_table=11 CP098604.1 Genbank gene 684354 684692 . + . ID=gene-NDY25_02990;Name=NDY25_02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02990 CP098604.1 Protein Homology CDS 684354 684692 . + 0 ID=cds-UUF03027.1;Parent=gene-NDY25_02990;Dbxref=NCBI_GP:UUF03027.1;Name=UUF03027.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849735.1;locus_tag=NDY25_02990;product=hypothetical protein;protein_id=UUF03027.1;transl_table=11 CP098604.1 Genbank gene 684695 685402 . + . ID=gene-NDY25_02995;Name=NDY25_02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_02995 CP098604.1 Protein Homology CDS 684695 685402 . + 0 ID=cds-UUF03028.1;Parent=gene-NDY25_02995;Dbxref=NCBI_GP:UUF03028.1;Name=UUF03028.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160015.1;locus_tag=NDY25_02995;product=fimbria/pilus periplasmic chaperone;protein_id=UUF03028.1;transl_table=11 CP098604.1 Genbank gene 686051 686890 . + . ID=gene-NDY25_03000;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=NDY25_03000 CP098604.1 Protein Homology CDS 686051 686890 . + 0 ID=cds-UUF03029.1;Parent=gene-NDY25_03000;Dbxref=NCBI_GP:UUF03029.1;Name=UUF03029.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsB;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269915.1;locus_tag=NDY25_03000;product=30S ribosomal protein S2;protein_id=UUF03029.1;transl_table=11 CP098604.1 Genbank gene 687061 687939 . + . ID=gene-NDY25_03005;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=NDY25_03005 CP098604.1 Protein Homology CDS 687061 687939 . + 0 ID=cds-UUF03030.1;Parent=gene-NDY25_03005;Dbxref=NCBI_GP:UUF03030.1;Name=UUF03030.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962895.1;locus_tag=NDY25_03005;product=translation elongation factor Ts;protein_id=UUF03030.1;transl_table=11 CP098604.1 Genbank gene 688219 689742 . + . ID=gene-NDY25_03010;Name=NDY25_03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03010 CP098604.1 Protein Homology CDS 688219 689742 . + 0 ID=cds-UUF03031.1;Parent=gene-NDY25_03010;Dbxref=NCBI_GP:UUF03031.1;Name=UUF03031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438815.1;locus_tag=NDY25_03010;product=GGDEF domain-containing protein;protein_id=UUF03031.1;transl_table=11 CP098604.1 Genbank gene 689850 690572 . + . ID=gene-NDY25_03015;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=NDY25_03015 CP098604.1 Protein Homology CDS 689850 690572 . + 0 ID=cds-UUF03032.1;Parent=gene-NDY25_03015;Dbxref=NCBI_GP:UUF03032.1;Name=UUF03032.1;Ontology_term=GO:0015949,GO:0033862;gbkey=CDS;gene=pyrH;go_function=UMP kinase activity|0033862||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366166.1;locus_tag=NDY25_03015;product=UMP kinase;protein_id=UUF03032.1;transl_table=11 CP098604.1 Genbank gene 690770 691327 . + . ID=gene-NDY25_03020;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=NDY25_03020 CP098604.1 Protein Homology CDS 690770 691327 . + 0 ID=cds-UUF03033.1;Parent=gene-NDY25_03020;Dbxref=NCBI_GP:UUF03033.1;Name=UUF03033.1;Ontology_term=GO:0006412,GO:0008135,GO:0005737;gbkey=CDS;gene=frr;go_component=cytoplasm|0005737||IEA;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036562.1;locus_tag=NDY25_03020;product=ribosome recycling factor;protein_id=UUF03033.1;transl_table=11 CP098604.1 Genbank gene 691345 692106 . + . ID=gene-NDY25_03025;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=NDY25_03025 CP098604.1 Protein Homology CDS 691345 692106 . + 0 ID=cds-UUF03034.1;Parent=gene-NDY25_03025;Dbxref=NCBI_GP:UUF03034.1;Name=UUF03034.1;Ontology_term=GO:0009252,GO:0005737;gbkey=CDS;gene=uppS;go_component=cytoplasm|0005737||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346894.1;locus_tag=NDY25_03025;product=polyprenyl diphosphate synthase;protein_id=UUF03034.1;transl_table=11 CP098604.1 Genbank gene 692103 692930 . + . ID=gene-NDY25_03030;Name=NDY25_03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03030 CP098604.1 Protein Homology CDS 692103 692930 . + 0 ID=cds-UUF03035.1;Parent=gene-NDY25_03030;Dbxref=NCBI_GP:UUF03035.1;Name=UUF03035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258695.1;locus_tag=NDY25_03030;product=phosphatidate cytidylyltransferase;protein_id=UUF03035.1;transl_table=11 CP098604.1 Genbank gene 692933 694123 . + . ID=gene-NDY25_03035;Name=NDY25_03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03035 CP098604.1 Protein Homology CDS 692933 694123 . + 0 ID=cds-UUF03036.1;Parent=gene-NDY25_03035;Dbxref=NCBI_GP:UUF03036.1;Name=UUF03036.1;Ontology_term=GO:0008299,GO:0005515,GO:0030604,GO:0046872,GO:0070402;gbkey=CDS;go_function=protein binding|0005515||IEA,1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA,metal ion binding|0046872||IEA,NADPH binding|0070402||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485371.1;locus_tag=NDY25_03035;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=UUF03036.1;transl_table=11 CP098604.1 Genbank gene 694150 695496 . + . ID=gene-NDY25_03040;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=NDY25_03040 CP098604.1 Protein Homology CDS 694150 695496 . + 0 ID=cds-UUF03037.1;Parent=gene-NDY25_03040;Dbxref=NCBI_GP:UUF03037.1;Name=UUF03037.1;Ontology_term=GO:0006508,GO:0004222,GO:0016021;gbkey=CDS;gene=rseP;go_component=integral component of membrane|0016021||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304858.1;locus_tag=NDY25_03040;product=RIP metalloprotease RseP;protein_id=UUF03037.1;transl_table=11 CP098604.1 Genbank gene 695580 697946 . + . ID=gene-NDY25_03045;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=NDY25_03045 CP098604.1 Protein Homology CDS 695580 697946 . + 0 ID=cds-UUF03038.1;Parent=gene-NDY25_03045;Dbxref=NCBI_GP:UUF03038.1;Name=UUF03038.1;Ontology_term=GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117511.1;locus_tag=NDY25_03045;product=outer membrane protein assembly factor BamA;protein_id=UUF03038.1;transl_table=11 CP098604.1 Genbank gene 698026 698217 . - . ID=gene-NDY25_03050;Name=NDY25_03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03050 CP098604.1 Protein Homology CDS 698026 698217 . - 0 ID=cds-UUF03039.1;Parent=gene-NDY25_03050;Dbxref=NCBI_GP:UUF03039.1;Name=UUF03039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159402.1;locus_tag=NDY25_03050;product=hypothetical protein;protein_id=UUF03039.1;transl_table=11 CP098604.1 Genbank gene 698345 699358 . + . ID=gene-NDY25_03055;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=NDY25_03055 CP098604.1 Protein Homology CDS 698345 699358 . + 0 ID=cds-UUF03040.1;Parent=gene-NDY25_03055;Dbxref=NCBI_GP:UUF03040.1;Name=UUF03040.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965614.1;locus_tag=NDY25_03055;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=UUF03040.1;transl_table=11 CP098604.1 Genbank gene 699355 699813 . + . ID=gene-NDY25_03060;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=NDY25_03060 CP098604.1 Protein Homology CDS 699355 699813 . + 0 ID=cds-UUF03041.1;Parent=gene-NDY25_03060;Dbxref=NCBI_GP:UUF03041.1;Name=UUF03041.1;Ontology_term=GO:0006633,GO:0016836;gbkey=CDS;gene=fabZ;go_function=hydro-lyase activity|0016836||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380391.1;locus_tag=NDY25_03060;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=UUF03041.1;transl_table=11 CP098604.1 Genbank gene 699839 700630 . + . ID=gene-NDY25_03065;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=NDY25_03065 CP098604.1 Protein Homology CDS 699839 700630 . + 0 ID=cds-UUF03042.1;Parent=gene-NDY25_03065;Dbxref=NCBI_GP:UUF03042.1;Name=UUF03042.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507232.1;locus_tag=NDY25_03065;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=UUF03042.1;transl_table=11 CP098604.1 Genbank gene 700657 701946 . + . ID=gene-NDY25_03070;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=NDY25_03070 CP098604.1 Protein Homology CDS 700657 701946 . + 0 ID=cds-UUF04511.1;Parent=gene-NDY25_03070;Dbxref=NCBI_GP:UUF04511.1;Name=UUF04511.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452822.1;locus_tag=NDY25_03070;product=lipid-A-disaccharide synthase;protein_id=UUF04511.1;transl_table=11 CP098604.1 Genbank gene 701943 702671 . + . ID=gene-NDY25_03075;Name=NDY25_03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03075 CP098604.1 Protein Homology CDS 701943 702671 . + 0 ID=cds-UUF03043.1;Parent=gene-NDY25_03075;Dbxref=NCBI_GP:UUF03043.1;Name=UUF03043.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507230.1;locus_tag=NDY25_03075;product=ribonuclease HII;protein_id=UUF03043.1;transl_table=11 CP098604.1 Genbank gene 702958 706548 . + . ID=gene-NDY25_03080;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=NDY25_03080 CP098604.1 Protein Homology CDS 702958 706548 . + 0 ID=cds-UUF03044.1;Parent=gene-NDY25_03080;Dbxref=NCBI_GP:UUF03044.1;Name=UUF03044.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902404.1;locus_tag=NDY25_03080;product=DNA polymerase III subunit alpha;protein_id=UUF03044.1;transl_table=11 CP098604.1 Genbank gene 706705 707664 . + . ID=gene-NDY25_03085;Name=NDY25_03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03085 CP098604.1 Protein Homology CDS 706705 707664 . + 0 ID=cds-UUF03045.1;Parent=gene-NDY25_03085;Dbxref=NCBI_GP:UUF03045.1;Name=UUF03045.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578271.1;locus_tag=NDY25_03085;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=UUF03045.1;transl_table=11 CP098604.1 Genbank gene 707738 708493 . + . ID=gene-NDY25_03090;Name=NDY25_03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03090 CP098604.1 Protein Homology CDS 707738 708493 . + 0 ID=cds-UUF03046.1;Parent=gene-NDY25_03090;Dbxref=NCBI_GP:UUF03046.1;Name=UUF03046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849943.1;locus_tag=NDY25_03090;product=tetratricopeptide repeat protein;protein_id=UUF03046.1;transl_table=11 CP098604.1 Genbank gene 708563 709009 . - . ID=gene-NDY25_03095;Name=NDY25_03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03095 CP098604.1 Protein Homology CDS 708563 709009 . - 0 ID=cds-UUF03047.1;Parent=gene-NDY25_03095;Dbxref=NCBI_GP:UUF03047.1;Name=UUF03047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902407.1;locus_tag=NDY25_03095;product=CopD family protein;protein_id=UUF03047.1;transl_table=11 CP098604.1 Genbank gene 709083 709685 . + . ID=gene-NDY25_03100;Name=NDY25_03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03100 CP098604.1 Protein Homology CDS 709083 709685 . + 0 ID=cds-UUF03048.1;Parent=gene-NDY25_03100;Dbxref=NCBI_GP:UUF03048.1;Name=UUF03048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452816.1;locus_tag=NDY25_03100;product=class I SAM-dependent methyltransferase;protein_id=UUF03048.1;transl_table=11 CP098604.1 Genbank gene 710062 711405 . + . ID=gene-NDY25_03105;Name=NDY25_03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03105 CP098604.1 Protein Homology CDS 710062 711405 . + 0 ID=cds-UUF03049.1;Parent=gene-NDY25_03105;Dbxref=NCBI_GP:UUF03049.1;Name=UUF03049.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472356.1;locus_tag=NDY25_03105;product=polyhydroxyalkanoate depolymerase;protein_id=UUF03049.1;transl_table=11 CP098604.1 Genbank gene 712443 713345 . - . ID=gene-NDY25_03110;Name=NDY25_03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03110 CP098604.1 Protein Homology CDS 712443 713345 . - 0 ID=cds-UUF04512.1;Parent=gene-NDY25_03110;Dbxref=NCBI_GP:UUF04512.1;Name=UUF04512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485399.1;locus_tag=NDY25_03110;product=sensor domain-containing protein;protein_id=UUF04512.1;transl_table=11 CP098604.1 Genbank gene 713300 713713 . - . ID=gene-NDY25_03115;Name=NDY25_03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03115 CP098604.1 Protein Homology CDS 713300 713713 . - 0 ID=cds-UUF03050.1;Parent=gene-NDY25_03115;Dbxref=NCBI_GP:UUF03050.1;Name=UUF03050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451072.1;locus_tag=NDY25_03115;product=PadR family transcriptional regulator;protein_id=UUF03050.1;transl_table=11 CP098604.1 Genbank gene 714047 715609 . + . ID=gene-NDY25_03120;Name=NDY25_03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03120 CP098604.1 Protein Homology CDS 714047 715609 . + 0 ID=cds-UUF03051.1;Parent=gene-NDY25_03120;Dbxref=NCBI_GP:UUF03051.1;Name=UUF03051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155674.1;locus_tag=NDY25_03120;product=alginate export family protein;protein_id=UUF03051.1;transl_table=11 CP098604.1 Genbank pseudogene 716143 717065 . + . ID=gene-NDY25_03125;Name=NDY25_03125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03125;pseudo=true CP098604.1 Protein Homology CDS 716143 717065 . + 0 ID=cds-NDY25_03125;Parent=gene-NDY25_03125;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012509957.1;locus_tag=NDY25_03125;product=IS110 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 717685 719052 . - . ID=gene-NDY25_03130;Name=NDY25_03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03130 CP098604.1 Protein Homology CDS 717685 719052 . - 0 ID=cds-UUF03052.1;Parent=gene-NDY25_03130;Dbxref=NCBI_GP:UUF03052.1;Name=UUF03052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450225.1;locus_tag=NDY25_03130;product=hypothetical protein;protein_id=UUF03052.1;transl_table=11 CP098604.1 Genbank gene 719208 719882 . + . ID=gene-NDY25_03135;Name=NDY25_03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03135 CP098604.1 Protein Homology CDS 719208 719882 . + 0 ID=cds-UUF03053.1;Parent=gene-NDY25_03135;Dbxref=NCBI_GP:UUF03053.1;Name=UUF03053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380413.1;locus_tag=NDY25_03135;product=DUF502 domain-containing protein;protein_id=UUF03053.1;transl_table=11 CP098604.1 Genbank gene 719887 720663 . + . ID=gene-NDY25_03140;Name=NDY25_03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03140 CP098604.1 Protein Homology CDS 719887 720663 . + 0 ID=cds-UUF03054.1;Parent=gene-NDY25_03140;Dbxref=NCBI_GP:UUF03054.1;Name=UUF03054.1;Ontology_term=GO:1990397;gbkey=CDS;go_process=queuosine salvage|1990397||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155671.1;locus_tag=NDY25_03140;product=queuosine precursor transporter;protein_id=UUF03054.1;transl_table=11 CP098604.1 Genbank gene 720892 721482 . + . ID=gene-NDY25_03145;Name=NDY25_03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03145 CP098604.1 Protein Homology CDS 720892 721482 . + 0 ID=cds-UUF03055.1;Parent=gene-NDY25_03145;Dbxref=NCBI_GP:UUF03055.1;Name=UUF03055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450222.1;locus_tag=NDY25_03145;product=LysE family translocator;protein_id=UUF03055.1;transl_table=11 CP098604.1 Genbank gene 721448 722311 . - . ID=gene-NDY25_03150;Name=NDY25_03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03150 CP098604.1 Protein Homology CDS 721448 722311 . - 0 ID=cds-UUF03056.1;Parent=gene-NDY25_03150;Dbxref=NCBI_GP:UUF03056.1;Name=UUF03056.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014376.2;locus_tag=NDY25_03150;product=AraC family transcriptional regulator;protein_id=UUF03056.1;transl_table=11 CP098604.1 Genbank pseudogene 722496 724430 . + . ID=gene-NDY25_03155;Name=NDY25_03155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03155;pseudo=true CP098604.1 Protein Homology CDS 722496 724430 . + 0 ID=cds-NDY25_03155;Parent=gene-NDY25_03155;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346878.1;locus_tag=NDY25_03155;product=DUF885 family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 724451 725413 . - . ID=gene-NDY25_03160;Name=mmuM;gbkey=Gene;gene=mmuM;gene_biotype=protein_coding;locus_tag=NDY25_03160 CP098604.1 Protein Homology CDS 724451 725413 . - 0 ID=cds-UUF03057.1;Parent=gene-NDY25_03160;Dbxref=NCBI_GP:UUF03057.1;Name=UUF03057.1;Ontology_term=GO:0009086,GO:0047150;gbkey=CDS;gene=mmuM;go_function=betaine-homocysteine S-methyltransferase activity|0047150||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155669.1;locus_tag=NDY25_03160;product=homocysteine S-methyltransferase;protein_id=UUF03057.1;transl_table=11 CP098604.1 Genbank gene 725410 726807 . - . ID=gene-NDY25_03165;Name=mmuP;gbkey=Gene;gene=mmuP;gene_biotype=protein_coding;locus_tag=NDY25_03165 CP098604.1 Protein Homology CDS 725410 726807 . - 0 ID=cds-UUF03058.1;Parent=gene-NDY25_03165;Dbxref=NCBI_GP:UUF03058.1;Name=UUF03058.1;Ontology_term=GO:0055085;gbkey=CDS;gene=mmuP;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965585.1;locus_tag=NDY25_03165;product=S-methylmethionine permease;protein_id=UUF03058.1;transl_table=11 CP098604.1 Genbank gene 727218 727607 . + . ID=gene-NDY25_03170;Name=NDY25_03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03170 CP098604.1 Protein Homology CDS 727218 727607 . + 0 ID=cds-UUF03059.1;Parent=gene-NDY25_03170;Dbxref=NCBI_GP:UUF03059.1;Name=UUF03059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159538.1;locus_tag=NDY25_03170;product=VOC family protein;protein_id=UUF03059.1;transl_table=11 CP098604.1 Genbank gene 727815 728708 . + . ID=gene-NDY25_03175;Name=NDY25_03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03175 CP098604.1 Protein Homology CDS 727815 728708 . + 0 ID=cds-UUF03060.1;Parent=gene-NDY25_03175;Dbxref=NCBI_GP:UUF03060.1;Name=UUF03060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904110.1;locus_tag=NDY25_03175;product=ABC transporter ATP-binding protein;protein_id=UUF03060.1;transl_table=11 CP098604.1 Genbank gene 728721 732311 . + . ID=gene-NDY25_03180;Name=NDY25_03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03180 CP098604.1 Protein Homology CDS 728721 732311 . + 0 ID=cds-UUF03061.1;Parent=gene-NDY25_03180;Dbxref=NCBI_GP:UUF03061.1;Name=UUF03061.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450215.1;locus_tag=NDY25_03180;product=ABC transporter permease subunit;protein_id=UUF03061.1;transl_table=11 CP098604.1 Genbank gene 732417 732866 . + . ID=gene-NDY25_03185;Name=NDY25_03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03185 CP098604.1 Protein Homology CDS 732417 732866 . + 0 ID=cds-UUF03062.1;Parent=gene-NDY25_03185;Dbxref=NCBI_GP:UUF03062.1;Name=UUF03062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237831.1;locus_tag=NDY25_03185;product=DUF2147 domain-containing protein;protein_id=UUF03062.1;transl_table=11 CP098604.1 Genbank gene 733122 735212 . + . ID=gene-NDY25_03190;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=NDY25_03190 CP098604.1 Protein Homology CDS 733122 735212 . + 0 ID=cds-UUF03063.1;Parent=gene-NDY25_03190;Dbxref=NCBI_GP:UUF03063.1;Name=UUF03063.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304414.1;locus_tag=NDY25_03190;product=methionine--tRNA ligase;protein_id=UUF03063.1;transl_table=11 CP098604.1 Genbank gene 735661 736251 . + . ID=gene-NDY25_03195;Name=NDY25_03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03195 CP098604.1 Protein Homology CDS 735661 736251 . + 0 ID=cds-UUF03064.1;Parent=gene-NDY25_03195;Dbxref=NCBI_GP:UUF03064.1;Name=UUF03064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462990.1;locus_tag=NDY25_03195;product=HAD-IB family hydrolase;protein_id=UUF03064.1;transl_table=11 CP098604.1 Genbank gene 736253 736684 . + . ID=gene-NDY25_03200;Name=rnfB;gbkey=Gene;gene=rnfB;gene_biotype=protein_coding;locus_tag=NDY25_03200 CP098604.1 Protein Homology CDS 736253 736684 . + 0 ID=cds-UUF03065.1;Parent=gene-NDY25_03200;Dbxref=NCBI_GP:UUF03065.1;Name=UUF03065.1;gbkey=CDS;gene=rnfB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450211.1;locus_tag=NDY25_03200;product=Rnf electron transport complex subunit RnfB;protein_id=UUF03065.1;transl_table=11 CP098604.1 Genbank gene 736802 737587 . + . ID=gene-NDY25_03205;Name=NDY25_03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03205 CP098604.1 Protein Homology CDS 736802 737587 . + 0 ID=cds-UUF03066.1;Parent=gene-NDY25_03205;Dbxref=NCBI_GP:UUF03066.1;Name=UUF03066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304522.1;locus_tag=NDY25_03205;product=hypothetical protein;protein_id=UUF03066.1;transl_table=11 CP098604.1 Genbank gene 737673 738041 . + . ID=gene-NDY25_03210;Name=NDY25_03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03210 CP098604.1 Protein Homology CDS 737673 738041 . + 0 ID=cds-UUF03067.1;Parent=gene-NDY25_03210;Dbxref=NCBI_GP:UUF03067.1;Name=UUF03067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366091.1;locus_tag=NDY25_03210;product=DUF4345 domain-containing protein;protein_id=UUF03067.1;transl_table=11 CP098604.1 Genbank gene 738100 738663 . + . ID=gene-NDY25_03215;Name=NDY25_03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03215 CP098604.1 Protein Homology CDS 738100 738663 . + 0 ID=cds-UUF03068.1;Parent=gene-NDY25_03215;Dbxref=NCBI_GP:UUF03068.1;Name=UUF03068.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993590.1;locus_tag=NDY25_03215;product=sigma-70 family RNA polymerase sigma factor;protein_id=UUF03068.1;transl_table=11 CP098604.1 Genbank pseudogene 738660 739497 . + . ID=gene-NDY25_03220;Name=NDY25_03220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03220;pseudo=true CP098604.1 Protein Homology CDS 738660 739497 . + 0 ID=cds-NDY25_03220;Parent=gene-NDY25_03220;Note=frameshifted;Ontology_term=GO:0005886,GO:0016021;gbkey=CDS;go_component=plasma membrane|0005886||IEA,integral component of membrane|0016021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485441.1;locus_tag=NDY25_03220;product=anti-sigma factor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 739721 740719 . + . ID=gene-NDY25_03225;Name=NDY25_03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03225 CP098604.1 Protein Homology CDS 739721 740719 . + 0 ID=cds-UUF03069.1;Parent=gene-NDY25_03225;Dbxref=NCBI_GP:UUF03069.1;Name=UUF03069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166055.1;locus_tag=NDY25_03225;product=acyl-CoA desaturase;protein_id=UUF03069.1;transl_table=11 CP098604.1 Genbank gene 740716 741966 . + . ID=gene-NDY25_03230;Name=NDY25_03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03230 CP098604.1 Protein Homology CDS 740716 741966 . + 0 ID=cds-UUF03070.1;Parent=gene-NDY25_03230;Dbxref=NCBI_GP:UUF03070.1;Name=UUF03070.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155653.1;locus_tag=NDY25_03230;product=FAD-dependent oxidoreductase;protein_id=UUF03070.1;transl_table=11 CP098604.1 Genbank gene 741966 742844 . + . ID=gene-NDY25_03235;Name=NDY25_03235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03235 CP098604.1 Protein Homology CDS 741966 742844 . + 0 ID=cds-UUF03071.1;Parent=gene-NDY25_03235;Dbxref=NCBI_GP:UUF03071.1;Name=UUF03071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485446.1;locus_tag=NDY25_03235;product=DUF1365 domain-containing protein;protein_id=UUF03071.1;transl_table=11 CP098604.1 Genbank gene 742841 744136 . + . ID=gene-NDY25_03240;Name=NDY25_03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03240 CP098604.1 Protein Homology CDS 742841 744136 . + 0 ID=cds-UUF03072.1;Parent=gene-NDY25_03240;Dbxref=NCBI_GP:UUF03072.1;Name=UUF03072.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380444.1;locus_tag=NDY25_03240;product=cyclopropane-fatty-acyl-phospholipid synthase family protein;protein_id=UUF03072.1;transl_table=11 CP098604.1 Genbank gene 744133 744678 . + . ID=gene-NDY25_03245;Name=NDY25_03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03245 CP098604.1 Protein Homology CDS 744133 744678 . + 0 ID=cds-UUF03073.1;Parent=gene-NDY25_03245;Dbxref=NCBI_GP:UUF03073.1;Name=UUF03073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451779.1;locus_tag=NDY25_03245;product=DUF2878 domain-containing protein;protein_id=UUF03073.1;transl_table=11 CP098604.1 Genbank gene 744675 745457 . + . ID=gene-NDY25_03250;Name=NDY25_03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03250 CP098604.1 Protein Homology CDS 744675 745457 . + 0 ID=cds-UUF03074.1;Parent=gene-NDY25_03250;Dbxref=NCBI_GP:UUF03074.1;Name=UUF03074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967316.1;locus_tag=NDY25_03250;product=DUF1295 domain-containing protein;protein_id=UUF03074.1;transl_table=11 CP098604.1 Genbank gene 745475 746545 . + . ID=gene-NDY25_03255;Name=NDY25_03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03255 CP098604.1 Protein Homology CDS 745475 746545 . + 0 ID=cds-UUF03075.1;Parent=gene-NDY25_03255;Dbxref=NCBI_GP:UUF03075.1;Name=UUF03075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924864.1;locus_tag=NDY25_03255;product=cyclopropane-fatty-acyl-phospholipid synthase family protein;protein_id=UUF03075.1;transl_table=11 CP098604.1 Genbank gene 746791 747138 . - . ID=gene-NDY25_03260;Name=NDY25_03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03260 CP098604.1 Protein Homology CDS 746791 747138 . - 0 ID=cds-UUF03076.1;Parent=gene-NDY25_03260;Dbxref=NCBI_GP:UUF03076.1;Name=UUF03076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578235.1;locus_tag=NDY25_03260;product=RidA family protein;protein_id=UUF03076.1;transl_table=11 CP098604.1 Genbank gene 747149 747856 . - . ID=gene-NDY25_03265;Name=NDY25_03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03265 CP098604.1 Protein Homology CDS 747149 747856 . - 0 ID=cds-UUF03077.1;Parent=gene-NDY25_03265;Dbxref=NCBI_GP:UUF03077.1;Name=UUF03077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967322.1;locus_tag=NDY25_03265;product=DUF998 domain-containing protein;protein_id=UUF03077.1;transl_table=11 CP098604.1 Genbank gene 748115 750679 . + . ID=gene-NDY25_03270;Name=mprF;gbkey=Gene;gene=mprF;gene_biotype=protein_coding;locus_tag=NDY25_03270 CP098604.1 Protein Homology CDS 748115 750679 . + 0 ID=cds-UUF03078.1;Parent=gene-NDY25_03270;Dbxref=NCBI_GP:UUF03078.1;Name=UUF03078.1;gbkey=CDS;gene=mprF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485461.1;locus_tag=NDY25_03270;product=bifunctional lysylphosphatidylglycerol flippase/synthetase MprF;protein_id=UUF03078.1;transl_table=11 CP098604.1 Genbank gene 750893 752266 . - . ID=gene-NDY25_03275;Name=NDY25_03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03275 CP098604.1 Protein Homology CDS 750893 752266 . - 0 ID=cds-UUF03079.1;Parent=gene-NDY25_03275;Dbxref=NCBI_GP:UUF03079.1;Name=UUF03079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485462.1;locus_tag=NDY25_03275;product=virulence factor family protein;protein_id=UUF03079.1;transl_table=11 CP098604.1 Genbank gene 752338 752520 . - . ID=gene-NDY25_03280;Name=NDY25_03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03280 CP098604.1 Protein Homology CDS 752338 752520 . - 0 ID=cds-UUF03080.1;Parent=gene-NDY25_03280;Dbxref=NCBI_GP:UUF03080.1;Name=UUF03080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507194.1;locus_tag=NDY25_03280;product=oxidoreductase-like domain-containing protein;protein_id=UUF03080.1;transl_table=11 CP098604.1 Genbank gene 752583 753188 . - . ID=gene-NDY25_03285;Name=NDY25_03285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03285 CP098604.1 Protein Homology CDS 752583 753188 . - 0 ID=cds-UUF03081.1;Parent=gene-NDY25_03285;Dbxref=NCBI_GP:UUF03081.1;Name=UUF03081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974397.1;locus_tag=NDY25_03285;product=hypothetical protein;protein_id=UUF03081.1;transl_table=11 CP098604.1 Genbank gene 753224 753826 . - . ID=gene-NDY25_03290;Name=thpR;gbkey=Gene;gene=thpR;gene_biotype=protein_coding;locus_tag=NDY25_03290 CP098604.1 Protein Homology CDS 753224 753826 . - 0 ID=cds-UUF03082.1;Parent=gene-NDY25_03290;Dbxref=NCBI_GP:UUF03082.1;Name=UUF03082.1;Ontology_term=GO:0008033,GO:0008664;gbkey=CDS;gene=thpR;go_function=2'-5'-RNA ligase activity|0008664||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408284.1;locus_tag=NDY25_03290;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=UUF03082.1;transl_table=11 CP098604.1 Genbank gene 754095 754550 . - . ID=gene-NDY25_03295;Name=NDY25_03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03295 CP098604.1 Protein Homology CDS 754095 754550 . - 0 ID=cds-UUF03083.1;Parent=gene-NDY25_03295;Dbxref=NCBI_GP:UUF03083.1;Name=UUF03083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303138.1;locus_tag=NDY25_03295;product=PA2169 family four-helix-bundle protein;protein_id=UUF03083.1;transl_table=11 CP098604.1 Genbank gene 754778 754948 . - . ID=gene-NDY25_03300;Name=NDY25_03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03300 CP098604.1 Protein Homology CDS 754778 754948 . - 0 ID=cds-UUF03084.1;Parent=gene-NDY25_03300;Dbxref=NCBI_GP:UUF03084.1;Name=UUF03084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155640.1;locus_tag=NDY25_03300;product=hypothetical protein;protein_id=UUF03084.1;transl_table=11 CP098604.1 Genbank gene 755098 756303 . - . ID=gene-NDY25_03305;Name=NDY25_03305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03305 CP098604.1 Protein Homology CDS 755098 756303 . - 0 ID=cds-UUF03085.1;Parent=gene-NDY25_03305;Dbxref=NCBI_GP:UUF03085.1;Name=UUF03085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366048.1;locus_tag=NDY25_03305;product=MFS transporter;protein_id=UUF03085.1;transl_table=11 CP098604.1 Genbank gene 756525 757643 . + . ID=gene-NDY25_03310;Name=NDY25_03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03310 CP098604.1 Protein Homology CDS 756525 757643 . + 0 ID=cds-UUF03086.1;Parent=gene-NDY25_03310;Dbxref=NCBI_GP:UUF03086.1;Name=UUF03086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450490.1;locus_tag=NDY25_03310;product=alkene reductase;protein_id=UUF03086.1;transl_table=11 CP098604.1 Genbank gene 758049 759071 . + . ID=gene-NDY25_03315;Name=NDY25_03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03315 CP098604.1 Protein Homology CDS 758049 759071 . + 0 ID=cds-UUF03087.1;Parent=gene-NDY25_03315;Dbxref=NCBI_GP:UUF03087.1;Name=UUF03087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904451.1;locus_tag=NDY25_03315;product=L%2CD-transpeptidase;protein_id=UUF03087.1;transl_table=11 CP098604.1 Genbank gene 759277 760068 . + . ID=gene-NDY25_03320;Name=NDY25_03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03320 CP098604.1 Protein Homology CDS 759277 760068 . + 0 ID=cds-UUF03088.1;Parent=gene-NDY25_03320;Dbxref=NCBI_GP:UUF03088.1;Name=UUF03088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904452.1;locus_tag=NDY25_03320;product=hypothetical protein;protein_id=UUF03088.1;transl_table=11 CP098604.1 Genbank gene 760186 760521 . - . ID=gene-NDY25_03325;Name=NDY25_03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03325 CP098604.1 Protein Homology CDS 760186 760521 . - 0 ID=cds-UUF03089.1;Parent=gene-NDY25_03325;Dbxref=NCBI_GP:UUF03089.1;Name=UUF03089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489493.1;locus_tag=NDY25_03325;product=zinc ribbon domain-containing protein YjdM;protein_id=UUF03089.1;transl_table=11 CP098604.1 Genbank gene 760619 761707 . + . ID=gene-NDY25_03330;Name=NDY25_03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03330 CP098604.1 Protein Homology CDS 760619 761707 . + 0 ID=cds-UUF03090.1;Parent=gene-NDY25_03330;Dbxref=NCBI_GP:UUF03090.1;Name=UUF03090.1;Ontology_term=GO:0006812,GO:0008324,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cation transmembrane transporter activity|0008324||IEA,efflux transmembrane transporter activity|0015562||IEA;go_process=cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974393.1;locus_tag=NDY25_03330;product=cation diffusion facilitator family transporter;protein_id=UUF03090.1;transl_table=11 CP098604.1 Genbank gene 761998 762471 . + . ID=gene-NDY25_03335;Name=NDY25_03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03335 CP098604.1 Protein Homology CDS 761998 762471 . + 0 ID=cds-UUF03091.1;Parent=gene-NDY25_03335;Dbxref=NCBI_GP:UUF03091.1;Name=UUF03091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578221.1;locus_tag=NDY25_03335;product=peptidylprolyl isomerase;protein_id=UUF03091.1;transl_table=11 CP098604.1 Genbank gene 762596 763951 . + . ID=gene-NDY25_03340;Name=NDY25_03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03340 CP098604.1 Protein Homology CDS 762596 763951 . + 0 ID=cds-UUF03092.1;Parent=gene-NDY25_03340;Dbxref=NCBI_GP:UUF03092.1;Name=UUF03092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449531.1;locus_tag=NDY25_03340;product=Hsp70 family protein;protein_id=UUF03092.1;transl_table=11 CP098604.1 Genbank gene 764184 764369 . + . ID=gene-NDY25_03345;Name=NDY25_03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03345 CP098604.1 Protein Homology CDS 764184 764369 . + 0 ID=cds-UUF03093.1;Parent=gene-NDY25_03345;Dbxref=NCBI_GP:UUF03093.1;Name=UUF03093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155632.1;locus_tag=NDY25_03345;product=hypothetical protein;protein_id=UUF03093.1;transl_table=11 CP098604.1 Genbank gene 764444 765328 . - . ID=gene-NDY25_03350;Name=NDY25_03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03350 CP098604.1 Protein Homology CDS 764444 765328 . - 0 ID=cds-UUF03094.1;Parent=gene-NDY25_03350;Dbxref=NCBI_GP:UUF03094.1;Name=UUF03094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507182.1;locus_tag=NDY25_03350;product=DUF4097 domain-containing protein;protein_id=UUF03094.1;transl_table=11 CP098604.1 Genbank gene 765340 765867 . - . ID=gene-NDY25_03355;Name=NDY25_03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03355 CP098604.1 Protein Homology CDS 765340 765867 . - 0 ID=cds-UUF03095.1;Parent=gene-NDY25_03355;Dbxref=NCBI_GP:UUF03095.1;Name=UUF03095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303190.1;locus_tag=NDY25_03355;product=hypothetical protein;protein_id=UUF03095.1;transl_table=11 CP098604.1 Genbank gene 765864 766451 . - . ID=gene-NDY25_03360;Name=NDY25_03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03360 CP098604.1 Protein Homology CDS 765864 766451 . - 0 ID=cds-UUF03096.1;Parent=gene-NDY25_03360;Dbxref=NCBI_GP:UUF03096.1;Name=UUF03096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036499.1;locus_tag=NDY25_03360;product=sigma-70 family RNA polymerase sigma factor;protein_id=UUF03096.1;transl_table=11 CP098604.1 Genbank gene 766639 766887 . + . ID=gene-NDY25_03365;Name=NDY25_03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03365 CP098604.1 Protein Homology CDS 766639 766887 . + 0 ID=cds-UUF03097.1;Parent=gene-NDY25_03365;Dbxref=NCBI_GP:UUF03097.1;Name=UUF03097.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904105.1;locus_tag=NDY25_03365;product=hypothetical protein;protein_id=UUF03097.1;transl_table=11 CP098604.1 Genbank gene 766960 767553 . + . ID=gene-NDY25_03370;Name=NDY25_03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03370 CP098604.1 Protein Homology CDS 766960 767553 . + 0 ID=cds-UUF03098.1;Parent=gene-NDY25_03370;Dbxref=NCBI_GP:UUF03098.1;Name=UUF03098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997098.1;locus_tag=NDY25_03370;product=mechanosensitive ion channel family protein;protein_id=UUF03098.1;transl_table=11 CP098604.1 Genbank gene 767570 767836 . - . ID=gene-NDY25_03375;Name=NDY25_03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03375 CP098604.1 Protein Homology CDS 767570 767836 . - 0 ID=cds-UUF03099.1;Parent=gene-NDY25_03375;Dbxref=NCBI_GP:UUF03099.1;Name=UUF03099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452846.1;locus_tag=NDY25_03375;product=DksA/TraR family C4-type zinc finger protein;protein_id=UUF03099.1;transl_table=11 CP098604.1 Genbank gene 767968 768222 . + . ID=gene-NDY25_03380;Name=NDY25_03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03380 CP098604.1 Protein Homology CDS 767968 768222 . + 0 ID=cds-UUF03100.1;Parent=gene-NDY25_03380;Dbxref=NCBI_GP:UUF03100.1;Name=UUF03100.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990927.1;locus_tag=NDY25_03380;product=DUF2789 domain-containing protein;protein_id=UUF03100.1;transl_table=11 CP098604.1 Genbank gene 768419 768592 . - . ID=gene-NDY25_03385;Name=NDY25_03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03385 CP098604.1 Protein Homology CDS 768419 768592 . - 0 ID=cds-UUF03101.1;Parent=gene-NDY25_03385;Dbxref=NCBI_GP:UUF03101.1;Name=UUF03101.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182774.1;locus_tag=NDY25_03385;product=DUF1328 domain-containing protein;protein_id=UUF03101.1;transl_table=11 CP098604.1 Genbank gene 768769 769296 . + . ID=gene-NDY25_03390;Name=NDY25_03390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03390 CP098604.1 Protein Homology CDS 768769 769296 . + 0 ID=cds-UUF03102.1;Parent=gene-NDY25_03390;Dbxref=NCBI_GP:UUF03102.1;Name=UUF03102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113015.1;locus_tag=NDY25_03390;product=M48 family metallopeptidase;protein_id=UUF03102.1;transl_table=11 CP098604.1 Genbank gene 769332 770600 . + . ID=gene-NDY25_03395;Name=NDY25_03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03395 CP098604.1 Protein Homology CDS 769332 770600 . + 0 ID=cds-UUF03103.1;Parent=gene-NDY25_03395;Dbxref=NCBI_GP:UUF03103.1;Name=UUF03103.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449856.1;locus_tag=NDY25_03395;product=2OG-Fe(II) oxygenase;protein_id=UUF03103.1;transl_table=11 CP098604.1 Genbank gene 770757 771857 . + . ID=gene-NDY25_03400;Name=NDY25_03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03400 CP098604.1 Protein Homology CDS 770757 771857 . + 0 ID=cds-UUF03104.1;Parent=gene-NDY25_03400;Dbxref=NCBI_GP:UUF03104.1;Name=UUF03104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155625.1;locus_tag=NDY25_03400;product=Glu/Leu/Phe/Val dehydrogenase;protein_id=UUF03104.1;transl_table=11 CP098604.1 Genbank gene 771901 774750 . - . ID=gene-NDY25_03405;Name=NDY25_03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03405 CP098604.1 Protein Homology CDS 771901 774750 . - 0 ID=cds-UUF03105.1;Parent=gene-NDY25_03405;Dbxref=NCBI_GP:UUF03105.1;Name=UUF03105.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911624.1;locus_tag=NDY25_03405;product=S8 family serine peptidase;protein_id=UUF03105.1;transl_table=11 CP098604.1 Genbank gene 774924 776099 . + . ID=gene-NDY25_03410;Name=NDY25_03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03410 CP098604.1 Protein Homology CDS 774924 776099 . + 0 ID=cds-UUF03106.1;Parent=gene-NDY25_03410;Dbxref=NCBI_GP:UUF03106.1;Name=UUF03106.1;Ontology_term=GO:0006631,GO:0003985;gbkey=CDS;go_function=acetyl-CoA C-acetyltransferase activity|0003985||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911622.1;locus_tag=NDY25_03410;product=acetyl-CoA C-acyltransferase;protein_id=UUF03106.1;transl_table=11 CP098604.1 Genbank gene 776222 776563 . + . ID=gene-NDY25_03415;Name=NDY25_03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03415 CP098604.1 Protein Homology CDS 776222 776563 . + 0 ID=cds-UUF04513.1;Parent=gene-NDY25_03415;Dbxref=NCBI_GP:UUF04513.1;Name=UUF04513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269920.1;locus_tag=NDY25_03415;product=hypothetical protein;protein_id=UUF04513.1;transl_table=11 CP098604.1 Genbank gene 776821 777147 . + . ID=gene-NDY25_03420;Name=NDY25_03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03420 CP098604.1 Protein Homology CDS 776821 777147 . + 0 ID=cds-UUF03107.1;Parent=gene-NDY25_03420;Dbxref=NCBI_GP:UUF03107.1;Name=UUF03107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921547.1;locus_tag=NDY25_03420;product=hypothetical protein;protein_id=UUF03107.1;transl_table=11 CP098604.1 Genbank gene 777405 779114 . + . ID=gene-NDY25_03425;Name=NDY25_03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03425 CP098604.1 Protein Homology CDS 777405 779114 . + 0 ID=cds-UUF03108.1;Parent=gene-NDY25_03425;Dbxref=NCBI_GP:UUF03108.1;Name=UUF03108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166007.1;locus_tag=NDY25_03425;product=GGDEF domain-containing protein;protein_id=UUF03108.1;transl_table=11 CP098604.1 Genbank gene 779211 779786 . + . ID=gene-NDY25_03430;Name=NDY25_03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03430 CP098604.1 Protein Homology CDS 779211 779786 . + 0 ID=cds-UUF03109.1;Parent=gene-NDY25_03430;Dbxref=NCBI_GP:UUF03109.1;Name=UUF03109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967362.1;locus_tag=NDY25_03430;product=polymer-forming cytoskeletal protein;protein_id=UUF03109.1;transl_table=11 CP098604.1 Genbank gene 779783 780148 . + . ID=gene-NDY25_03435;Name=NDY25_03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03435 CP098604.1 Protein Homology CDS 779783 780148 . + 0 ID=cds-UUF03110.1;Parent=gene-NDY25_03435;Dbxref=NCBI_GP:UUF03110.1;Name=UUF03110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302272.1;locus_tag=NDY25_03435;product=hypothetical protein;protein_id=UUF03110.1;transl_table=11 CP098604.1 Genbank gene 780503 781513 . + . ID=gene-NDY25_03440;Name=NDY25_03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03440 CP098604.1 Protein Homology CDS 780503 781513 . + 0 ID=cds-UUF03111.1;Parent=gene-NDY25_03440;Dbxref=NCBI_GP:UUF03111.1;Name=UUF03111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089699.1;locus_tag=NDY25_03440;product=ligase-associated DNA damage response exonuclease;protein_id=UUF03111.1;transl_table=11 CP098604.1 Genbank gene 781510 781743 . + . ID=gene-NDY25_03445;Name=NDY25_03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03445 CP098604.1 Protein Homology CDS 781510 781743 . + 0 ID=cds-UUF03112.1;Parent=gene-NDY25_03445;Dbxref=NCBI_GP:UUF03112.1;Name=UUF03112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155619.1;locus_tag=NDY25_03445;product=hypothetical protein;protein_id=UUF03112.1;transl_table=11 CP098604.1 Genbank gene 781740 783344 . + . ID=gene-NDY25_03450;Name=NDY25_03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03450 CP098604.1 Protein Homology CDS 781740 783344 . + 0 ID=cds-UUF03113.1;Parent=gene-NDY25_03450;Dbxref=NCBI_GP:UUF03113.1;Name=UUF03113.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0003910,GO:0005524;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA ligase (ATP) activity|0003910||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300442.1;locus_tag=NDY25_03450;product=ATP-dependent DNA ligase;protein_id=UUF03113.1;transl_table=11 CP098604.1 Genbank gene 783341 785836 . + . ID=gene-NDY25_03455;Name=NDY25_03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03455 CP098604.1 Protein Homology CDS 783341 785836 . + 0 ID=cds-UUF03114.1;Parent=gene-NDY25_03455;Dbxref=NCBI_GP:UUF03114.1;Name=UUF03114.1;Ontology_term=GO:0003676,GO:0016818;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155617.1;locus_tag=NDY25_03455;product=ligase-associated DNA damage response DEXH box helicase;protein_id=UUF03114.1;transl_table=11 CP098604.1 Genbank gene 785826 786470 . + . ID=gene-NDY25_03460;Name=pdeM;gbkey=Gene;gene=pdeM;gene_biotype=protein_coding;locus_tag=NDY25_03460 CP098604.1 Protein Homology CDS 785826 786470 . + 0 ID=cds-UUF03115.1;Parent=gene-NDY25_03460;Dbxref=NCBI_GP:UUF03115.1;Name=UUF03115.1;Ontology_term=GO:0016787;gbkey=CDS;gene=pdeM;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924783.1;locus_tag=NDY25_03460;product=ligase-associated DNA damage response endonuclease PdeM;protein_id=UUF03115.1;transl_table=11 CP098604.1 Genbank gene 786557 787852 . - . ID=gene-NDY25_03465;Name=NDY25_03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03465 CP098604.1 Protein Homology CDS 786557 787852 . - 0 ID=cds-UUF03116.1;Parent=gene-NDY25_03465;Dbxref=NCBI_GP:UUF03116.1;Name=UUF03116.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903729.1;locus_tag=NDY25_03465;product=FAD-dependent monooxygenase;protein_id=UUF03116.1;transl_table=11 CP098604.1 Genbank gene 787949 788155 . - . ID=gene-NDY25_03470;Name=NDY25_03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03470 CP098604.1 Protein Homology CDS 787949 788155 . - 0 ID=cds-UUF03117.1;Parent=gene-NDY25_03470;Dbxref=NCBI_GP:UUF03117.1;Name=UUF03117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488188.1;locus_tag=NDY25_03470;product=cold-shock protein;protein_id=UUF03117.1;transl_table=11 CP098604.1 Genbank gene 788243 788995 . - . ID=gene-NDY25_03475;Name=NDY25_03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03475 CP098604.1 Protein Homology CDS 788243 788995 . - 0 ID=cds-UUF03118.1;Parent=gene-NDY25_03475;Dbxref=NCBI_GP:UUF03118.1;Name=UUF03118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408258.1;locus_tag=NDY25_03475;product=S-methyl-5'-thioinosine phosphorylase;protein_id=UUF03118.1;transl_table=11 CP098604.1 Genbank gene 789082 789636 . - . ID=gene-NDY25_03480;Name=NDY25_03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03480 CP098604.1 Protein Homology CDS 789082 789636 . - 0 ID=cds-UUF03119.1;Parent=gene-NDY25_03480;Dbxref=NCBI_GP:UUF03119.1;Name=UUF03119.1;Ontology_term=GO:0009116;gbkey=CDS;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449878.1;locus_tag=NDY25_03480;product=hypoxanthine-guanine phosphoribosyltransferase;protein_id=UUF03119.1;transl_table=11 CP098604.1 Genbank gene 789636 790640 . - . ID=gene-NDY25_03485;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=NDY25_03485 CP098604.1 Protein Homology CDS 789636 790640 . - 0 ID=cds-UUF03120.1;Parent=gene-NDY25_03485;Dbxref=NCBI_GP:UUF03120.1;Name=UUF03120.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303533.1;locus_tag=NDY25_03485;product=beta-N-acetylhexosaminidase;protein_id=UUF03120.1;transl_table=11 CP098604.1 Genbank gene 790897 792462 . - . ID=gene-NDY25_03490;Name=NDY25_03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03490 CP098604.1 Protein Homology CDS 790897 792462 . - 0 ID=cds-UUF03121.1;Parent=gene-NDY25_03490;Dbxref=NCBI_GP:UUF03121.1;Name=UUF03121.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449880.1;locus_tag=NDY25_03490;product=cryptochrome/photolyase family protein;protein_id=UUF03121.1;transl_table=11 CP098604.1 Genbank gene 792467 793477 . - . ID=gene-NDY25_03495;Name=NDY25_03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03495 CP098604.1 Protein Homology CDS 792467 793477 . - 0 ID=cds-UUF03122.1;Parent=gene-NDY25_03495;Dbxref=NCBI_GP:UUF03122.1;Name=UUF03122.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810371.1;locus_tag=NDY25_03495;product=FAD-dependent oxidoreductase;protein_id=UUF03122.1;transl_table=11 CP098604.1 Genbank gene 793517 794200 . - . ID=gene-NDY25_03500;Name=NDY25_03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03500 CP098604.1 Protein Homology CDS 793517 794200 . - 0 ID=cds-UUF03123.1;Parent=gene-NDY25_03500;Dbxref=NCBI_GP:UUF03123.1;Name=UUF03123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155610.1;locus_tag=NDY25_03500;product=DsbA family oxidoreductase;protein_id=UUF03123.1;transl_table=11 CP098604.1 Genbank gene 794316 794840 . - . ID=gene-NDY25_03505;Name=NDY25_03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03505 CP098604.1 Protein Homology CDS 794316 794840 . - 0 ID=cds-UUF03124.1;Parent=gene-NDY25_03505;Dbxref=NCBI_GP:UUF03124.1;Name=UUF03124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449883.1;locus_tag=NDY25_03505;product=CYTH domain-containing protein;protein_id=UUF03124.1;transl_table=11 CP098604.1 Genbank gene 794936 795583 . + . ID=gene-NDY25_03510;Name=NDY25_03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03510 CP098604.1 Protein Homology CDS 794936 795583 . + 0 ID=cds-UUF03125.1;Parent=gene-NDY25_03510;Dbxref=NCBI_GP:UUF03125.1;Name=UUF03125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449884.1;locus_tag=NDY25_03510;product=hypothetical protein;protein_id=UUF03125.1;transl_table=11 CP098604.1 Genbank gene 795654 796988 . - . ID=gene-NDY25_03515;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=NDY25_03515 CP098604.1 Protein Homology CDS 795654 796988 . - 0 ID=cds-UUF03126.1;Parent=gene-NDY25_03515;Dbxref=NCBI_GP:UUF03126.1;Name=UUF03126.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010380519.1;locus_tag=NDY25_03515;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=UUF03126.1;transl_table=11 CP098604.1 Genbank gene 797146 797868 . + . ID=gene-NDY25_03520;Name=NDY25_03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03520 CP098604.1 Protein Homology CDS 797146 797868 . + 0 ID=cds-UUF03127.1;Parent=gene-NDY25_03520;Dbxref=NCBI_GP:UUF03127.1;Name=UUF03127.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258605.1;locus_tag=NDY25_03520;product=response regulator;protein_id=UUF03127.1;transl_table=11 CP098604.1 Genbank gene 798021 798743 . - . ID=gene-NDY25_03525;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=NDY25_03525 CP098604.1 Protein Homology CDS 798021 798743 . - 0 ID=cds-UUF03128.1;Parent=gene-NDY25_03525;Dbxref=NCBI_GP:UUF03128.1;Name=UUF03128.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300430.1;locus_tag=NDY25_03525;product=DNA repair protein RecO;protein_id=UUF03128.1;transl_table=11 CP098604.1 Genbank gene 798771 799670 . - . ID=gene-NDY25_03530;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=NDY25_03530 CP098604.1 Protein Homology CDS 798771 799670 . - 0 ID=cds-UUF03129.1;Parent=gene-NDY25_03530;Dbxref=NCBI_GP:UUF03129.1;Name=UUF03129.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921522.1;locus_tag=NDY25_03530;product=GTPase Era;protein_id=UUF03129.1;transl_table=11 CP098604.1 Genbank gene 799667 800347 . - . ID=gene-NDY25_03535;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=NDY25_03535 CP098604.1 Protein Homology CDS 799667 800347 . - 0 ID=cds-UUF03130.1;Parent=gene-NDY25_03535;Dbxref=NCBI_GP:UUF03130.1;Name=UUF03130.1;Ontology_term=GO:0006396,GO:0004525;gbkey=CDS;gene=rnc;go_function=ribonuclease III activity|0004525||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118163.1;locus_tag=NDY25_03535;product=ribonuclease III;protein_id=UUF03130.1;transl_table=11 CP098604.1 Genbank gene 800337 800744 . - . ID=gene-NDY25_03540;Name=NDY25_03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03540 CP098604.1 Protein Homology CDS 800337 800744 . - 0 ID=cds-UUF03131.1;Parent=gene-NDY25_03540;Dbxref=NCBI_GP:UUF03131.1;Name=UUF03131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050845.1;locus_tag=NDY25_03540;product=DUF4845 domain-containing protein;protein_id=UUF03131.1;transl_table=11 CP098604.1 Genbank gene 800745 801545 . - . ID=gene-NDY25_03545;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=NDY25_03545 CP098604.1 Protein Homology CDS 800745 801545 . - 0 ID=cds-UUF03132.1;Parent=gene-NDY25_03545;Dbxref=NCBI_GP:UUF03132.1;Name=UUF03132.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155604.1;locus_tag=NDY25_03545;product=signal peptidase I;protein_id=UUF03132.1;transl_table=11 CP098604.1 Genbank gene 801650 803440 . - . ID=gene-NDY25_03550;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=NDY25_03550 CP098604.1 Protein Homology CDS 801650 803440 . - 0 ID=cds-UUF04514.1;Parent=gene-NDY25_03550;Dbxref=NCBI_GP:UUF04514.1;Name=UUF04514.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300425.1;locus_tag=NDY25_03550;product=translation elongation factor 4;protein_id=UUF04514.1;transl_table=11 CP098604.1 Genbank gene 803628 805214 . - . ID=gene-NDY25_03555;Name=NDY25_03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03555 CP098604.1 Protein Homology CDS 803628 805214 . - 0 ID=cds-UUF03133.1;Parent=gene-NDY25_03555;Dbxref=NCBI_GP:UUF03133.1;Name=UUF03133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160027.1;locus_tag=NDY25_03555;product=DegQ family serine endoprotease;protein_id=UUF03133.1;transl_table=11 CP098604.1 Genbank gene 805325 806206 . - . ID=gene-NDY25_03560;Name=NDY25_03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03560 CP098604.1 Protein Homology CDS 805325 806206 . - 0 ID=cds-UUF03134.1;Parent=gene-NDY25_03560;Dbxref=NCBI_GP:UUF03134.1;Name=UUF03134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159519.1;locus_tag=NDY25_03560;product=sigma-E factor negative regulatory protein;protein_id=UUF03134.1;transl_table=11 CP098604.1 Genbank gene 806203 806823 . - . ID=gene-NDY25_03565;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=NDY25_03565 CP098604.1 Protein Homology CDS 806203 806823 . - 0 ID=cds-UUF04515.1;Parent=gene-NDY25_03565;Dbxref=NCBI_GP:UUF04515.1;Name=UUF04515.1;Ontology_term=GO:0006352,GO:0006979,GO:0016987,GO:0005737;gbkey=CDS;gene=rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962205.1;locus_tag=NDY25_03565;product=RNA polymerase sigma factor RpoE;protein_id=UUF04515.1;transl_table=11 CP098604.1 Genbank gene 807059 809140 . + . ID=gene-NDY25_03570;Name=NDY25_03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03570 CP098604.1 Protein Homology CDS 807059 809140 . + 0 ID=cds-UUF03135.1;Parent=gene-NDY25_03570;Dbxref=NCBI_GP:UUF03135.1;Name=UUF03135.1;Ontology_term=GO:0006631,GO:0070403;gbkey=CDS;go_function=NAD+ binding|0070403||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931134.1;locus_tag=NDY25_03570;product=3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein;protein_id=UUF03135.1;transl_table=11 CP098604.1 Genbank gene 809311 812163 . - . ID=gene-NDY25_03575;Name=NDY25_03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03575 CP098604.1 Protein Homology CDS 809311 812163 . - 0 ID=cds-UUF03136.1;Parent=gene-NDY25_03575;Dbxref=NCBI_GP:UUF03136.1;Name=UUF03136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161181.1;locus_tag=NDY25_03575;product=TonB-dependent receptor;protein_id=UUF03136.1;transl_table=11 CP098604.1 Genbank gene 812564 814135 . - . ID=gene-NDY25_03580;Name=NDY25_03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03580 CP098604.1 Protein Homology CDS 812564 814135 . - 0 ID=cds-UUF03137.1;Parent=gene-NDY25_03580;Dbxref=NCBI_GP:UUF03137.1;Name=UUF03137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167063.1;locus_tag=NDY25_03580;product=sulfotransferase;protein_id=UUF03137.1;transl_table=11 CP098604.1 Genbank pseudogene 814176 814586 . - . ID=gene-NDY25_03585;Name=NDY25_03585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03585;pseudo=true CP098604.1 Protein Homology CDS 814176 814586 . - 0 ID=cds-NDY25_03585;Parent=gene-NDY25_03585;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155596.1;locus_tag=NDY25_03585;product=type VI secretion protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 814795 816297 . + . ID=gene-NDY25_03590;Name=NDY25_03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03590 CP098604.1 Protein Homology CDS 814795 816297 . + 0 ID=cds-UUF03138.1;Parent=gene-NDY25_03590;Dbxref=NCBI_GP:UUF03138.1;Name=UUF03138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155595.1;locus_tag=NDY25_03590;product=sulfotransferase;protein_id=UUF03138.1;transl_table=11 CP098604.1 Genbank gene 816310 817593 . - . ID=gene-NDY25_03595;Name=NDY25_03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03595 CP098604.1 Protein Homology CDS 816310 817593 . - 0 ID=cds-UUF03139.1;Parent=gene-NDY25_03595;Dbxref=NCBI_GP:UUF03139.1;Name=UUF03139.1;Ontology_term=GO:0018193;gbkey=CDS;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155594.1;locus_tag=NDY25_03595;product=aspartyl/asparaginyl beta-hydroxylase domain-containing protein;protein_id=UUF03139.1;transl_table=11 CP098604.1 Genbank gene 817763 818728 . - . ID=gene-NDY25_03600;Name=NDY25_03600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03600 CP098604.1 Protein Homology CDS 817763 818728 . - 0 ID=cds-UUF03140.1;Parent=gene-NDY25_03600;Dbxref=NCBI_GP:UUF03140.1;Name=UUF03140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449900.1;locus_tag=NDY25_03600;product=cation diffusion facilitator family transporter;protein_id=UUF03140.1;transl_table=11 CP098604.1 Genbank gene 819527 820429 . - . ID=gene-NDY25_03605;Name=mmsB;gbkey=Gene;gene=mmsB;gene_biotype=protein_coding;locus_tag=NDY25_03605 CP098604.1 Protein Homology CDS 819527 820429 . - 0 ID=cds-UUF04516.1;Parent=gene-NDY25_03605;Dbxref=NCBI_GP:UUF04516.1;Name=UUF04516.1;Ontology_term=GO:0006574,GO:0008442;gbkey=CDS;gene=mmsB;go_function=3-hydroxyisobutyrate dehydrogenase activity|0008442||IEA;go_process=valine catabolic process|0006574||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118158.1;locus_tag=NDY25_03605;product=3-hydroxyisobutyrate dehydrogenase;protein_id=UUF04516.1;transl_table=11 CP098604.1 Genbank gene 820586 821788 . - . ID=gene-NDY25_03610;Name=NDY25_03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03610 CP098604.1 Protein Homology CDS 820586 821788 . - 0 ID=cds-UUF03141.1;Parent=gene-NDY25_03610;Dbxref=NCBI_GP:UUF03141.1;Name=UUF03141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155591.1;locus_tag=NDY25_03610;product=enoyl-CoA hydratase/isomerase family protein;protein_id=UUF03141.1;transl_table=11 CP098604.1 Genbank gene 821773 822570 . - . ID=gene-NDY25_03615;Name=NDY25_03615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03615 CP098604.1 Protein Homology CDS 821773 822570 . - 0 ID=cds-UUF03142.1;Parent=gene-NDY25_03615;Dbxref=NCBI_GP:UUF03142.1;Name=UUF03142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903185.1;locus_tag=NDY25_03615;product=enoyl-CoA hydratase;protein_id=UUF03142.1;transl_table=11 CP098604.1 Genbank gene 822567 823748 . - . ID=gene-NDY25_03620;Name=NDY25_03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03620 CP098604.1 Protein Homology CDS 822567 823748 . - 0 ID=cds-UUF03143.1;Parent=gene-NDY25_03620;Dbxref=NCBI_GP:UUF03143.1;Name=UUF03143.1;Ontology_term=GO:0016627,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303549.1;locus_tag=NDY25_03620;product=acyl-CoA dehydrogenase family protein;protein_id=UUF03143.1;transl_table=11 CP098604.1 Genbank gene 823759 825264 . - . ID=gene-NDY25_03625;Name=NDY25_03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03625 CP098604.1 Protein Homology CDS 823759 825264 . - 0 ID=cds-UUF03144.1;Parent=gene-NDY25_03625;Dbxref=NCBI_GP:UUF03144.1;Name=UUF03144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155588.1;locus_tag=NDY25_03625;product=CoA-acylating methylmalonate-semialdehyde dehydrogenase;protein_id=UUF03144.1;transl_table=11 CP098604.1 Genbank gene 825389 826774 . + . ID=gene-NDY25_03630;Name=NDY25_03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03630 CP098604.1 Protein Homology CDS 825389 826774 . + 0 ID=cds-UUF03145.1;Parent=gene-NDY25_03630;Dbxref=NCBI_GP:UUF03145.1;Name=UUF03145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911544.1;locus_tag=NDY25_03630;product=short-chain fatty acyl-CoA regulator family protein;protein_id=UUF03145.1;transl_table=11 CP098604.1 Genbank gene 827150 829837 . + . ID=gene-NDY25_03635;Name=NDY25_03635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03635 CP098604.1 Protein Homology CDS 827150 829837 . + 0 ID=cds-UUF03146.1;Parent=gene-NDY25_03635;Dbxref=NCBI_GP:UUF03146.1;Name=UUF03146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488248.1;locus_tag=NDY25_03635;product=TonB-dependent receptor;protein_id=UUF03146.1;transl_table=11 CP098604.1 Genbank gene 829997 831208 . + . ID=gene-NDY25_03640;Name=NDY25_03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03640 CP098604.1 Protein Homology CDS 829997 831208 . + 0 ID=cds-UUF03147.1;Parent=gene-NDY25_03640;Dbxref=NCBI_GP:UUF03147.1;Name=UUF03147.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036451.1;locus_tag=NDY25_03640;product=arabinogalactan endo-1%2C4-beta-galactosidase;protein_id=UUF03147.1;transl_table=11 CP098604.1 Genbank gene 831205 833772 . + . ID=gene-NDY25_03645;Name=NDY25_03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03645 CP098604.1 Protein Homology CDS 831205 833772 . + 0 ID=cds-UUF03148.1;Parent=gene-NDY25_03645;Dbxref=NCBI_GP:UUF03148.1;Name=UUF03148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118153.1;locus_tag=NDY25_03645;product=DUF4982 domain-containing protein;protein_id=UUF03148.1;transl_table=11 CP098604.1 Genbank pseudogene 834032 835958 . - . ID=gene-NDY25_03650;Name=NDY25_03650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03650;pseudo=true CP098604.1 Protein Homology CDS 834032 835958 . - 0 ID=cds-NDY25_03650;Parent=gene-NDY25_03650;Note=frameshifted;Ontology_term=GO:0005975,GO:0004560;gbkey=CDS;go_function=alpha-L-fucosidase activity|0004560||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449168.1;locus_tag=NDY25_03650;product=alpha-L-fucosidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 836284 837408 . - . ID=gene-NDY25_03655;Name=NDY25_03655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03655 CP098604.1 Protein Homology CDS 836284 837408 . - 0 ID=cds-UUF03149.1;Parent=gene-NDY25_03655;Dbxref=NCBI_GP:UUF03149.1;Name=UUF03149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036410.1;locus_tag=NDY25_03655;product=pyridoxal phosphate-dependent aminotransferase;protein_id=UUF03149.1;transl_table=11 CP098604.1 Genbank gene 837420 837848 . - . ID=gene-NDY25_03660;Name=NDY25_03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03660 CP098604.1 Protein Homology CDS 837420 837848 . - 0 ID=cds-UUF03150.1;Parent=gene-NDY25_03660;Dbxref=NCBI_GP:UUF03150.1;Name=UUF03150.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.2;locus_tag=NDY25_03660;product=SDR family oxidoreductase;protein_id=UUF03150.1;transl_table=11 CP098604.1 Genbank gene 837862 838134 . - . ID=gene-NDY25_03665;Name=NDY25_03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03665 CP098604.1 GeneMarkS-2+ CDS 837862 838134 . - 0 ID=cds-UUF03151.1;Parent=gene-NDY25_03665;Dbxref=NCBI_GP:UUF03151.1;Name=UUF03151.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_03665;product=hypothetical protein;protein_id=UUF03151.1;transl_table=11 CP098604.1 Genbank gene 838207 839394 . - . ID=gene-NDY25_03670;Name=NDY25_03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03670 CP098604.1 Protein Homology CDS 838207 839394 . - 0 ID=cds-UUF03152.1;Parent=gene-NDY25_03670;Dbxref=NCBI_GP:UUF03152.1;Name=UUF03152.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012488.2;locus_tag=NDY25_03670;product=aminotransferase class V-fold PLP-dependent enzyme;protein_id=UUF03152.1;transl_table=11 CP098604.1 Genbank gene 839489 840943 . - . ID=gene-NDY25_03675;Name=NDY25_03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03675 CP098604.1 Protein Homology CDS 839489 840943 . - 0 ID=cds-UUF03153.1;Parent=gene-NDY25_03675;Dbxref=NCBI_GP:UUF03153.1;Name=UUF03153.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036407.1;locus_tag=NDY25_03675;product=FAD-dependent monooxygenase;protein_id=UUF03153.1;transl_table=11 CP098604.1 Genbank gene 841032 841727 . - . ID=gene-NDY25_03680;Name=NDY25_03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03680 CP098604.1 Protein Homology CDS 841032 841727 . - 0 ID=cds-UUF04517.1;Parent=gene-NDY25_03680;Dbxref=NCBI_GP:UUF04517.1;Name=UUF04517.1;Ontology_term=GO:0019441,GO:0004833,GO:0020037;gbkey=CDS;go_function=tryptophan 2%2C3-dioxygenase activity|0004833||IEA,heme binding|0020037||IEA;go_process=tryptophan catabolic process to kynurenine|0019441||IEA;inference=COORDINATES: protein motif:HMM:NF015272.2;locus_tag=NDY25_03680;product=tryptophan 2%2C3-dioxygenase family protein;protein_id=UUF04517.1;transl_table=11 CP098604.1 Genbank pseudogene 841835 842140 . - . ID=gene-NDY25_03685;Name=NDY25_03685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03685;pseudo=true CP098604.1 Protein Homology CDS 841835 842140 . - 0 ID=cds-NDY25_03685;Parent=gene-NDY25_03685;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0019441,GO:0004833,GO:0020037;gbkey=CDS;go_function=tryptophan 2%2C3-dioxygenase activity|0004833||IEA,heme binding|0020037||IEA;go_process=tryptophan catabolic process to kynurenine|0019441||IEA;inference=COORDINATES: protein motif:HMM:NF015272.2;locus_tag=NDY25_03685;product=tryptophan 2%2C3-dioxygenase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 842212 842742 . - . ID=gene-NDY25_03690;Name=NDY25_03690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03690 CP098604.1 Protein Homology CDS 842212 842742 . - 0 ID=cds-UUF03154.1;Parent=gene-NDY25_03690;Dbxref=NCBI_GP:UUF03154.1;Name=UUF03154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036405.1;locus_tag=NDY25_03690;product=VOC family protein;protein_id=UUF03154.1;transl_table=11 CP098604.1 Genbank gene 843935 846556 . + . ID=gene-NDY25_03695;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=NDY25_03695 CP098604.1 Protein Homology CDS 843935 846556 . + 0 ID=cds-UUF03155.1;Parent=gene-NDY25_03695;Dbxref=NCBI_GP:UUF03155.1;Name=UUF03155.1;Ontology_term=GO:0006298,GO:0005524;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089665.1;locus_tag=NDY25_03695;product=DNA mismatch repair protein MutS;protein_id=UUF03155.1;transl_table=11 CP098604.1 Genbank gene 846877 847491 . + . ID=gene-NDY25_03700;Name=NDY25_03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03700 CP098604.1 Protein Homology CDS 846877 847491 . + 0 ID=cds-UUF03156.1;Parent=gene-NDY25_03700;Dbxref=NCBI_GP:UUF03156.1;Name=UUF03156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571130.1;locus_tag=NDY25_03700;product=DUF937 domain-containing protein;protein_id=UUF03156.1;transl_table=11 CP098604.1 Genbank gene 847864 850110 . + . ID=gene-NDY25_03705;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=NDY25_03705 CP098604.1 Protein Homology CDS 847864 850110 . + 0 ID=cds-UUF03157.1;Parent=gene-NDY25_03705;Dbxref=NCBI_GP:UUF03157.1;Name=UUF03157.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507078.1;locus_tag=NDY25_03705;product=catalase/peroxidase HPI;protein_id=UUF03157.1;transl_table=11 CP098604.1 Genbank gene 850416 850823 . - . ID=gene-NDY25_03710;Name=NDY25_03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03710 CP098604.1 Protein Homology CDS 850416 850823 . - 0 ID=cds-UUF03158.1;Parent=gene-NDY25_03710;Dbxref=NCBI_GP:UUF03158.1;Name=UUF03158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571127.1;locus_tag=NDY25_03710;product=RNA-binding S4 domain-containing protein;protein_id=UUF03158.1;transl_table=11 CP098604.1 Genbank gene 851144 852619 . + . ID=gene-NDY25_03715;Name=NDY25_03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03715 CP098604.1 Protein Homology CDS 851144 852619 . + 0 ID=cds-UUF03159.1;Parent=gene-NDY25_03715;Dbxref=NCBI_GP:UUF03159.1;Name=UUF03159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449160.1;locus_tag=NDY25_03715;product=MATE family efflux transporter;protein_id=UUF03159.1;transl_table=11 CP098604.1 Genbank gene 852781 853188 . - . ID=gene-NDY25_03720;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=NDY25_03720 CP098604.1 Protein Homology CDS 852781 853188 . - 0 ID=cds-UUF03160.1;Parent=gene-NDY25_03720;Dbxref=NCBI_GP:UUF03160.1;Name=UUF03160.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470862.1;locus_tag=NDY25_03720;product=50S ribosomal protein L19;protein_id=UUF03160.1;transl_table=11 CP098604.1 Genbank gene 853336 854106 . - . ID=gene-NDY25_03725;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=NDY25_03725 CP098604.1 Protein Homology CDS 853336 854106 . - 0 ID=cds-UUF03161.1;Parent=gene-NDY25_03725;Dbxref=NCBI_GP:UUF03161.1;Name=UUF03161.1;Ontology_term=GO:0008033,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N(1))-methyltransferase activity|0052906||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449158.1;locus_tag=NDY25_03725;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=UUF03161.1;transl_table=11 CP098604.1 Genbank gene 854186 854698 . - . ID=gene-NDY25_03730;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=NDY25_03730 CP098604.1 Protein Homology CDS 854186 854698 . - 0 ID=cds-UUF03162.1;Parent=gene-NDY25_03730;Dbxref=NCBI_GP:UUF03162.1;Name=UUF03162.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0003723;gbkey=CDS;gene=rimM;go_function=RNA binding|0003723||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407909.1;locus_tag=NDY25_03730;product=ribosome maturation factor RimM;protein_id=UUF03162.1;transl_table=11 CP098604.1 Genbank gene 854740 855000 . - . ID=gene-NDY25_03735;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=NDY25_03735 CP098604.1 Protein Homology CDS 854740 855000 . - 0 ID=cds-UUF03163.1;Parent=gene-NDY25_03735;Dbxref=NCBI_GP:UUF03163.1;Name=UUF03163.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036396.1;locus_tag=NDY25_03735;product=30S ribosomal protein S16;protein_id=UUF03163.1;transl_table=11 CP098604.1 Genbank gene 855111 855908 . - . ID=gene-NDY25_03740;Name=NDY25_03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03740 CP098604.1 Protein Homology CDS 855111 855908 . - 0 ID=cds-UUF03164.1;Parent=gene-NDY25_03740;Dbxref=NCBI_GP:UUF03164.1;Name=UUF03164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159695.1;locus_tag=NDY25_03740;product=aminotransferase class IV family protein;protein_id=UUF03164.1;transl_table=11 CP098604.1 Genbank gene 855899 856897 . - . ID=gene-NDY25_03745;Name=NDY25_03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03745 CP098604.1 Protein Homology CDS 855899 856897 . - 0 ID=cds-UUF03165.1;Parent=gene-NDY25_03745;Dbxref=NCBI_GP:UUF03165.1;Name=UUF03165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089656.1;locus_tag=NDY25_03745;product=nitronate monooxygenase;protein_id=UUF03165.1;transl_table=11 CP098604.1 Genbank gene 856998 857828 . - . ID=gene-NDY25_03750;Name=NDY25_03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03750 CP098604.1 Protein Homology CDS 856998 857828 . - 0 ID=cds-UUF03166.1;Parent=gene-NDY25_03750;Dbxref=NCBI_GP:UUF03166.1;Name=UUF03166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507069.1;locus_tag=NDY25_03750;product=DUF2314 domain-containing protein;protein_id=UUF03166.1;transl_table=11 CP098604.1 Genbank pseudogene 858337 859259 . + . ID=gene-NDY25_03755;Name=NDY25_03755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03755;pseudo=true CP098604.1 Protein Homology CDS 858337 859259 . + 0 ID=cds-NDY25_03755;Parent=gene-NDY25_03755;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012509957.1;locus_tag=NDY25_03755;product=IS110 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 859566 860942 . - . ID=gene-NDY25_03760;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=NDY25_03760 CP098604.1 Protein Homology CDS 859566 860942 . - 0 ID=cds-UUF03167.1;Parent=gene-NDY25_03760;Dbxref=NCBI_GP:UUF03167.1;Name=UUF03167.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407905.1;locus_tag=NDY25_03760;product=signal recognition particle protein;protein_id=UUF03167.1;transl_table=11 CP098604.1 Genbank gene 861135 861926 . + . ID=gene-NDY25_03765;Name=ccsA;gbkey=Gene;gene=ccsA;gene_biotype=protein_coding;locus_tag=NDY25_03765 CP098604.1 Protein Homology CDS 861135 861926 . + 0 ID=cds-UUF03168.1;Parent=gene-NDY25_03765;Dbxref=NCBI_GP:UUF03168.1;Name=UUF03168.1;Ontology_term=GO:0017004,GO:0020037;gbkey=CDS;gene=ccsA;go_function=heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484236.1;locus_tag=NDY25_03765;product=cytochrome c biogenesis protein CcsA;protein_id=UUF03168.1;transl_table=11 CP098604.1 Genbank pseudogene 861979 863033 . - . ID=gene-NDY25_03770;Name=NDY25_03770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03770;pseudo=true CP098604.1 Protein Homology CDS 861979 863033 . - 0 ID=cds-NDY25_03770;Parent=gene-NDY25_03770;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932146.1;locus_tag=NDY25_03770;product=galactose mutarotase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 863312 864882 . + . ID=gene-NDY25_03775;Name=NDY25_03775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03775;pseudo=true CP098604.1 Protein Homology CDS 863312 864882 . + 0 ID=cds-NDY25_03775;Parent=gene-NDY25_03775;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304880.1;locus_tag=NDY25_03775;product=alpha-N-arabinofuranosidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 865138 866109 . - . ID=gene-NDY25_03780;Name=NDY25_03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03780 CP098604.1 Protein Homology CDS 865138 866109 . - 0 ID=cds-UUF03169.1;Parent=gene-NDY25_03780;Dbxref=NCBI_GP:UUF03169.1;Name=UUF03169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450605.1;locus_tag=NDY25_03780;product=LysR family transcriptional regulator;protein_id=UUF03169.1;transl_table=11 CP098604.1 Genbank gene 866246 866521 . + . ID=gene-NDY25_03785;Name=NDY25_03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03785 CP098604.1 Protein Homology CDS 866246 866521 . + 0 ID=cds-UUF03170.1;Parent=gene-NDY25_03785;Dbxref=NCBI_GP:UUF03170.1;Name=UUF03170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036386.1;locus_tag=NDY25_03785;product=DUF2798 domain-containing protein;protein_id=UUF03170.1;transl_table=11 CP098604.1 Genbank gene 866736 868085 . + . ID=gene-NDY25_03790;Name=NDY25_03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03790 CP098604.1 Protein Homology CDS 866736 868085 . + 0 ID=cds-UUF03171.1;Parent=gene-NDY25_03790;Dbxref=NCBI_GP:UUF03171.1;Name=UUF03171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472390.1;locus_tag=NDY25_03790;product=glycoside hydrolase family 16 protein;protein_id=UUF03171.1;transl_table=11 CP098604.1 Genbank gene 868117 868485 . - . ID=gene-NDY25_03795;Name=NDY25_03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03795 CP098604.1 Protein Homology CDS 868117 868485 . - 0 ID=cds-UUF03172.1;Parent=gene-NDY25_03795;Dbxref=NCBI_GP:UUF03172.1;Name=UUF03172.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159693.1;locus_tag=NDY25_03795;product=response regulator;protein_id=UUF03172.1;transl_table=11 CP098604.1 Genbank pseudogene 868478 869559 . - . ID=gene-NDY25_03800;Name=NDY25_03800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_03800;pseudo=true CP098604.1 Protein Homology CDS 868478 869559 . - 0 ID=cds-NDY25_03800;Parent=gene-NDY25_03800;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507059.1;locus_tag=NDY25_03800;product=ATP-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 869518 869748 . + . ID=gene-NDY25_03805;Name=NDY25_03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03805 CP098604.1 GeneMarkS-2+ CDS 869518 869748 . + 0 ID=cds-UUF04761.1;Parent=gene-NDY25_03805;Dbxref=NCBI_GP:UUF04761.1;Name=UUF04761.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_03805;product=hypothetical protein;protein_id=UUF04761.1;transl_table=11 CP098604.1 Genbank gene 869797 872961 . + . ID=gene-NDY25_03810;Name=NDY25_03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03810 CP098604.1 Protein Homology CDS 869797 872961 . + 0 ID=cds-UUF03173.1;Parent=gene-NDY25_03810;Dbxref=NCBI_GP:UUF03173.1;Name=UUF03173.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923564.1;locus_tag=NDY25_03810;product=response regulator;protein_id=UUF03173.1;transl_table=11 CP098604.1 Genbank gene 872934 873782 . + . ID=gene-NDY25_03815;Name=NDY25_03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03815 CP098604.1 Protein Homology CDS 872934 873782 . + 0 ID=cds-UUF03174.1;Parent=gene-NDY25_03815;Dbxref=NCBI_GP:UUF03174.1;Name=UUF03174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113037.1;locus_tag=NDY25_03815;product=protein-glutamate O-methyltransferase CheR;protein_id=UUF03174.1;transl_table=11 CP098604.1 Genbank gene 873779 874363 . + . ID=gene-NDY25_03820;Name=NDY25_03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03820 CP098604.1 Protein Homology CDS 873779 874363 . + 0 ID=cds-UUF03175.1;Parent=gene-NDY25_03820;Dbxref=NCBI_GP:UUF03175.1;Name=UUF03175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184160.1;locus_tag=NDY25_03820;product=chemotaxis protein CheB;protein_id=UUF03175.1;transl_table=11 CP098604.1 Genbank gene 874360 875490 . + . ID=gene-NDY25_03825;Name=NDY25_03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03825 CP098604.1 Protein Homology CDS 874360 875490 . + 0 ID=cds-UUF03176.1;Parent=gene-NDY25_03825;Dbxref=NCBI_GP:UUF03176.1;Name=UUF03176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484256.1;locus_tag=NDY25_03825;product=hybrid sensor histidine kinase/response regulator;protein_id=UUF03176.1;transl_table=11 CP098604.1 Genbank gene 875865 876224 . + . ID=gene-NDY25_03830;Name=NDY25_03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03830 CP098604.1 Protein Homology CDS 875865 876224 . + 0 ID=cds-UUF03177.1;Parent=gene-NDY25_03830;Dbxref=NCBI_GP:UUF03177.1;Name=UUF03177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365870.1;locus_tag=NDY25_03830;product=DUF1428 domain-containing protein;protein_id=UUF03177.1;transl_table=11 CP098604.1 Genbank gene 876378 876521 . - . ID=gene-NDY25_03835;Name=NDY25_03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03835 CP098604.1 GeneMarkS-2+ CDS 876378 876521 . - 0 ID=cds-UUF03178.1;Parent=gene-NDY25_03835;Dbxref=NCBI_GP:UUF03178.1;Name=UUF03178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_03835;product=hypothetical protein;protein_id=UUF03178.1;transl_table=11 CP098604.1 Genbank gene 876518 878152 . - . ID=gene-NDY25_03840;Name=NDY25_03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03840 CP098604.1 Protein Homology CDS 876518 878152 . - 0 ID=cds-UUF03179.1;Parent=gene-NDY25_03840;Dbxref=NCBI_GP:UUF03179.1;Name=UUF03179.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017142.2;locus_tag=NDY25_03840;product=hypothetical protein;protein_id=UUF03179.1;transl_table=11 CP098604.1 Genbank pseudogene 878564 879000 . + . ID=gene-NDY25_03845;Name=trxC;gbkey=Gene;gene=trxC;gene_biotype=pseudogene;locus_tag=NDY25_03845;pseudo=true CP098604.1 Protein Homology CDS 878564 879000 . + 0 ID=cds-NDY25_03845;Parent=gene-NDY25_03845;Note=frameshifted;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxC;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050813.1;locus_tag=NDY25_03845;product=thioredoxin TrxC;pseudo=true;transl_table=11 CP098604.1 Genbank gene 879119 881488 . - . ID=gene-NDY25_03850;Name=NDY25_03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03850 CP098604.1 Protein Homology CDS 879119 881488 . - 0 ID=cds-UUF03180.1;Parent=gene-NDY25_03850;Dbxref=NCBI_GP:UUF03180.1;Name=UUF03180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157997.1;locus_tag=NDY25_03850;product=TonB-dependent receptor;protein_id=UUF03180.1;transl_table=11 CP098604.1 Genbank gene 881570 881645 . + . ID=gene-NDY25_03855;Name=NDY25_03855;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_03855 CP098604.1 cmsearch ncRNA 881570 881645 . + . ID=rna-NDY25_03855;Parent=gene-NDY25_03855;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_03855;product=sX9 sRNA CP098604.1 cmsearch exon 881570 881645 . + . ID=exon-NDY25_03855-1;Parent=rna-NDY25_03855;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_03855;product=sX9 sRNA CP098604.1 Genbank gene 881978 883936 . - . ID=gene-NDY25_03860;Name=NDY25_03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03860 CP098604.1 Protein Homology CDS 881978 883936 . - 0 ID=cds-UUF03181.1;Parent=gene-NDY25_03860;Dbxref=NCBI_GP:UUF03181.1;Name=UUF03181.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967494.1;locus_tag=NDY25_03860;product=response regulator;protein_id=UUF03181.1;transl_table=11 CP098604.1 Genbank gene 883926 884801 . - . ID=gene-NDY25_03865;Name=NDY25_03865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03865 CP098604.1 Protein Homology CDS 883926 884801 . - 0 ID=cds-UUF03182.1;Parent=gene-NDY25_03865;Dbxref=NCBI_GP:UUF03182.1;Name=UUF03182.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901510.1;locus_tag=NDY25_03865;product=ATP-binding protein;protein_id=UUF03182.1;transl_table=11 CP098604.1 Genbank gene 884798 885808 . - . ID=gene-NDY25_03870;Name=NDY25_03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03870 CP098604.1 Protein Homology CDS 884798 885808 . - 0 ID=cds-UUF03183.1;Parent=gene-NDY25_03870;Dbxref=NCBI_GP:UUF03183.1;Name=UUF03183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928771.1;locus_tag=NDY25_03870;product=ATP-binding protein;protein_id=UUF03183.1;transl_table=11 CP098604.1 Genbank gene 885799 886194 . - . ID=gene-NDY25_03875;Name=NDY25_03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03875 CP098604.1 Protein Homology CDS 885799 886194 . - 0 ID=cds-UUF03184.1;Parent=gene-NDY25_03875;Dbxref=NCBI_GP:UUF03184.1;Name=UUF03184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484271.1;locus_tag=NDY25_03875;product=anti-sigma regulatory factor;protein_id=UUF03184.1;transl_table=11 CP098604.1 Genbank gene 886191 886553 . - . ID=gene-NDY25_03880;Name=NDY25_03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03880 CP098604.1 Protein Homology CDS 886191 886553 . - 0 ID=cds-UUF03185.1;Parent=gene-NDY25_03880;Dbxref=NCBI_GP:UUF03185.1;Name=UUF03185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365855.1;locus_tag=NDY25_03880;product=STAS domain-containing protein;protein_id=UUF03185.1;transl_table=11 CP098604.1 Genbank gene 886555 887397 . - . ID=gene-NDY25_03885;Name=NDY25_03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03885 CP098604.1 Protein Homology CDS 886555 887397 . - 0 ID=cds-UUF03186.1;Parent=gene-NDY25_03885;Dbxref=NCBI_GP:UUF03186.1;Name=UUF03186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117497.1;locus_tag=NDY25_03885;product=STAS domain-containing protein;protein_id=UUF03186.1;transl_table=11 CP098604.1 Genbank gene 887834 888934 . + . ID=gene-NDY25_03890;Name=NDY25_03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03890 CP098604.1 Protein Homology CDS 887834 888934 . + 0 ID=cds-UUF03187.1;Parent=gene-NDY25_03890;Dbxref=NCBI_GP:UUF03187.1;Name=UUF03187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507046.1;locus_tag=NDY25_03890;product=NADH:flavin oxidoreductase/NADH oxidase;protein_id=UUF03187.1;transl_table=11 CP098604.1 Genbank gene 890058 892382 . - . ID=gene-NDY25_03895;Name=NDY25_03895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03895 CP098604.1 Protein Homology CDS 890058 892382 . - 0 ID=cds-UUF03188.1;Parent=gene-NDY25_03895;Dbxref=NCBI_GP:UUF03188.1;Name=UUF03188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304704.1;locus_tag=NDY25_03895;product=hypothetical protein;protein_id=UUF03188.1;transl_table=11 CP098604.1 Genbank gene 892407 894278 . - . ID=gene-NDY25_03900;Name=NDY25_03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03900 CP098604.1 Protein Homology CDS 892407 894278 . - 0 ID=cds-UUF03189.1;Parent=gene-NDY25_03900;Dbxref=NCBI_GP:UUF03189.1;Name=UUF03189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928780.1;locus_tag=NDY25_03900;product=ATP-binding protein;protein_id=UUF03189.1;transl_table=11 CP098604.1 Genbank gene 894496 895851 . - . ID=gene-NDY25_03905;Name=NDY25_03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03905 CP098604.1 Protein Homology CDS 894496 895851 . - 0 ID=cds-UUF04518.1;Parent=gene-NDY25_03905;Dbxref=NCBI_GP:UUF04518.1;Name=UUF04518.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156588.1;locus_tag=NDY25_03905;product=helix-turn-helix transcriptional regulator;protein_id=UUF04518.1;transl_table=11 CP098604.1 Genbank gene 896773 897558 . + . ID=gene-NDY25_03910;Name=NDY25_03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03910 CP098604.1 Protein Homology CDS 896773 897558 . + 0 ID=cds-UUF04519.1;Parent=gene-NDY25_03910;Dbxref=NCBI_GP:UUF04519.1;Name=UUF04519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989930.1;locus_tag=NDY25_03910;product=response regulator transcription factor;protein_id=UUF04519.1;transl_table=11 CP098604.1 Genbank gene 897681 898067 . - . ID=gene-NDY25_03915;Name=NDY25_03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03915 CP098604.1 Protein Homology CDS 897681 898067 . - 0 ID=cds-UUF03190.1;Parent=gene-NDY25_03915;Dbxref=NCBI_GP:UUF03190.1;Name=UUF03190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365837.1;locus_tag=NDY25_03915;product=DUF805 domain-containing protein;protein_id=UUF03190.1;transl_table=11 CP098604.1 Genbank gene 898335 899726 . - . ID=gene-NDY25_03920;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=NDY25_03920 CP098604.1 Protein Homology CDS 898335 899726 . - 0 ID=cds-UUF03191.1;Parent=gene-NDY25_03920;Dbxref=NCBI_GP:UUF03191.1;Name=UUF03191.1;Ontology_term=GO:0006281,GO:0005524;gbkey=CDS;gene=radA;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484290.1;locus_tag=NDY25_03920;product=DNA repair protein RadA;protein_id=UUF03191.1;transl_table=11 CP098604.1 Genbank gene 900057 901937 . - . ID=gene-NDY25_03925;Name=NDY25_03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03925 CP098604.1 Protein Homology CDS 900057 901937 . - 0 ID=cds-UUF03192.1;Parent=gene-NDY25_03925;Dbxref=NCBI_GP:UUF03192.1;Name=UUF03192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346766.1;locus_tag=NDY25_03925;product=tetratricopeptide repeat protein;protein_id=UUF03192.1;transl_table=11 CP098604.1 Genbank gene 902108 902443 . - . ID=gene-NDY25_03930;Name=cyoD;gbkey=Gene;gene=cyoD;gene_biotype=protein_coding;locus_tag=NDY25_03930 CP098604.1 Protein Homology CDS 902108 902443 . - 0 ID=cds-UUF03193.1;Parent=gene-NDY25_03930;Dbxref=NCBI_GP:UUF03193.1;Name=UUF03193.1;Ontology_term=GO:0015990,GO:0009486,GO:0016021;gbkey=CDS;gene=cyoD;go_component=integral component of membrane|0016021||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156584.1;locus_tag=NDY25_03930;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=UUF03193.1;transl_table=11 CP098604.1 Genbank gene 902443 903072 . - . ID=gene-NDY25_03935;Name=cyoC;gbkey=Gene;gene=cyoC;gene_biotype=protein_coding;locus_tag=NDY25_03935 CP098604.1 Protein Homology CDS 902443 903072 . - 0 ID=cds-UUF03194.1;Parent=gene-NDY25_03935;Dbxref=NCBI_GP:UUF03194.1;Name=UUF03194.1;Ontology_term=GO:0015990,GO:0009486,GO:0016021;gbkey=CDS;gene=cyoC;go_component=integral component of membrane|0016021||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851535.1;locus_tag=NDY25_03935;product=cytochrome o ubiquinol oxidase subunit III;protein_id=UUF03194.1;transl_table=11 CP098604.1 Genbank gene 903069 905069 . - . ID=gene-NDY25_03940;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=NDY25_03940 CP098604.1 Protein Homology CDS 903069 905069 . - 0 ID=cds-UUF03195.1;Parent=gene-NDY25_03940;Dbxref=NCBI_GP:UUF03195.1;Name=UUF03195.1;Ontology_term=GO:0015990,GO:0009486,GO:0016021;gbkey=CDS;gene=cyoB;go_component=integral component of membrane|0016021||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472398.1;locus_tag=NDY25_03940;product=cytochrome o ubiquinol oxidase subunit I;protein_id=UUF03195.1;transl_table=11 CP098604.1 Genbank gene 905069 906019 . - . ID=gene-NDY25_03945;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=NDY25_03945 CP098604.1 Protein Homology CDS 905069 906019 . - 0 ID=cds-UUF03196.1;Parent=gene-NDY25_03945;Dbxref=NCBI_GP:UUF03196.1;Name=UUF03196.1;Ontology_term=GO:0015990,GO:0009486,GO:0016021;gbkey=CDS;gene=cyoA;go_component=integral component of membrane|0016021||IEA;go_function=cytochrome bo3 ubiquinol oxidase activity|0009486||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300511.1;locus_tag=NDY25_03945;product=ubiquinol oxidase subunit II;protein_id=UUF03196.1;transl_table=11 CP098604.1 Genbank gene 906383 906458 . - . ID=gene-NDY25_03950;Name=NDY25_03950;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_03950 CP098604.1 tRNAscan-SE tRNA 906383 906458 . - . ID=rna-NDY25_03950;Parent=gene-NDY25_03950;anticodon=(pos:complement(906423..906425));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_03950;product=tRNA-Thr CP098604.1 tRNAscan-SE exon 906383 906458 . - . ID=exon-NDY25_03950-1;Parent=rna-NDY25_03950;anticodon=(pos:complement(906423..906425));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_03950;product=tRNA-Thr CP098604.1 Genbank gene 906642 907592 . - . ID=gene-NDY25_03955;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=NDY25_03955 CP098604.1 Protein Homology CDS 906642 907592 . - 0 ID=cds-UUF03197.1;Parent=gene-NDY25_03955;Dbxref=NCBI_GP:UUF03197.1;Name=UUF03197.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156582.1;locus_tag=NDY25_03955;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=UUF03197.1;transl_table=11 CP098604.1 Genbank gene 907672 908184 . - . ID=gene-NDY25_03960;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=NDY25_03960 CP098604.1 Protein Homology CDS 907672 908184 . - 0 ID=cds-UUF03198.1;Parent=gene-NDY25_03960;Dbxref=NCBI_GP:UUF03198.1;Name=UUF03198.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005887;gbkey=CDS;gene=lspA;go_component=integral component of plasma membrane|0005887||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450190.1;locus_tag=NDY25_03960;product=signal peptidase II;protein_id=UUF03198.1;transl_table=11 CP098604.1 Genbank gene 908521 911352 . - . ID=gene-NDY25_03965;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=NDY25_03965 CP098604.1 Protein Homology CDS 908521 911352 . - 0 ID=cds-UUF03199.1;Parent=gene-NDY25_03965;Dbxref=NCBI_GP:UUF03199.1;Name=UUF03199.1;Ontology_term=GO:0006428,GO:0004822,GO:0005737;gbkey=CDS;gene=ileS;go_component=cytoplasm|0005737||IEA;go_function=isoleucine-tRNA ligase activity|0004822||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928804.1;locus_tag=NDY25_03965;product=isoleucine--tRNA ligase;protein_id=UUF03199.1;transl_table=11 CP098604.1 Genbank gene 911359 912393 . - . ID=gene-NDY25_03970;Name=NDY25_03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_03970 CP098604.1 Protein Homology CDS 911359 912393 . - 0 ID=cds-UUF03200.1;Parent=gene-NDY25_03970;Dbxref=NCBI_GP:UUF03200.1;Name=UUF03200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165409.1;locus_tag=NDY25_03970;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=UUF03200.1;transl_table=11 CP098604.1 Genbank gene 912601 914193 . - . ID=gene-NDY25_03975;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=NDY25_03975 CP098604.1 Protein Homology CDS 912601 914193 . - 0 ID=cds-UUF04520.1;Parent=gene-NDY25_03975;Dbxref=NCBI_GP:UUF04520.1;Name=UUF04520.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158642.1;locus_tag=NDY25_03975;product=murein biosynthesis integral membrane protein MurJ;protein_id=UUF04520.1;transl_table=11 CP098604.1 Genbank gene 914310 914579 . + . ID=gene-NDY25_03980;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=NDY25_03980 CP098604.1 Protein Homology CDS 914310 914579 . + 0 ID=cds-UUF03201.1;Parent=gene-NDY25_03980;Dbxref=NCBI_GP:UUF03201.1;Name=UUF03201.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsT;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184515.1;locus_tag=NDY25_03980;product=30S ribosomal protein S20;protein_id=UUF03201.1;transl_table=11 CP098604.1 Genbank gene 914671 915723 . - . ID=gene-NDY25_03985;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;locus_tag=NDY25_03985 CP098604.1 Protein Homology CDS 914671 915723 . - 0 ID=cds-UUF03202.1;Parent=gene-NDY25_03985;Dbxref=NCBI_GP:UUF03202.1;Name=UUF03202.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=obgE;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036350.1;locus_tag=NDY25_03985;product=GTPase ObgE;protein_id=UUF03202.1;transl_table=11 CP098604.1 Genbank gene 915974 916234 . - . ID=gene-NDY25_03990;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=NDY25_03990 CP098604.1 Protein Homology CDS 915974 916234 . - 0 ID=cds-UUF03203.1;Parent=gene-NDY25_03990;Dbxref=NCBI_GP:UUF03203.1;Name=UUF03203.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013534652.1;locus_tag=NDY25_03990;product=50S ribosomal protein L27;protein_id=UUF03203.1;transl_table=11 CP098604.1 Genbank gene 916247 916567 . - . ID=gene-NDY25_03995;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=NDY25_03995 CP098604.1 Protein Homology CDS 916247 916567 . - 0 ID=cds-UUF03204.1;Parent=gene-NDY25_03995;Dbxref=NCBI_GP:UUF03204.1;Name=UUF03204.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplU;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484328.1;locus_tag=NDY25_03995;product=50S ribosomal protein L21;protein_id=UUF03204.1;transl_table=11 CP098604.1 Genbank gene 916894 919860 . + . ID=gene-NDY25_04000;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=NDY25_04000 CP098604.1 Protein Homology CDS 916894 919860 . + 0 ID=cds-UUF03205.1;Parent=gene-NDY25_04000;Dbxref=NCBI_GP:UUF03205.1;Name=UUF03205.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504280.1;locus_tag=NDY25_04000;product=excinuclease ABC subunit UvrA;protein_id=UUF03205.1;transl_table=11 CP098604.1 Genbank gene 919860 920267 . + . ID=gene-NDY25_04005;Name=NDY25_04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04005 CP098604.1 Protein Homology CDS 919860 920267 . + 0 ID=cds-UUF03206.1;Parent=gene-NDY25_04005;Dbxref=NCBI_GP:UUF03206.1;Name=UUF03206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017912417.1;locus_tag=NDY25_04005;product=acyl-CoA thioesterase;protein_id=UUF03206.1;transl_table=11 CP098604.1 Genbank gene 920534 920962 . - . ID=gene-NDY25_04010;Name=NDY25_04010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04010 CP098604.1 Protein Homology CDS 920534 920962 . - 0 ID=cds-UUF04521.1;Parent=gene-NDY25_04010;Dbxref=NCBI_GP:UUF04521.1;Name=UUF04521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089634.1;locus_tag=NDY25_04010;product=copper chaperone PCu(A)C;protein_id=UUF04521.1;transl_table=11 CP098604.1 Genbank gene 921028 921798 . + . ID=gene-NDY25_04015;Name=NDY25_04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04015 CP098604.1 Protein Homology CDS 921028 921798 . + 0 ID=cds-UUF03207.1;Parent=gene-NDY25_04015;Dbxref=NCBI_GP:UUF03207.1;Name=UUF03207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156572.1;locus_tag=NDY25_04015;product=enoyl-CoA hydratase/isomerase family protein;protein_id=UUF03207.1;transl_table=11 CP098604.1 Genbank gene 921872 922777 . + . ID=gene-NDY25_04020;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=NDY25_04020 CP098604.1 Protein Homology CDS 921872 922777 . + 0 ID=cds-UUF03208.1;Parent=gene-NDY25_04020;Dbxref=NCBI_GP:UUF03208.1;Name=UUF03208.1;Ontology_term=GO:0006637,GO:0047617;gbkey=CDS;gene=tesB;go_function=acyl-CoA hydrolase activity|0047617||IEA;go_process=acyl-CoA metabolic process|0006637||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850289.1;locus_tag=NDY25_04020;product=acyl-CoA thioesterase II;protein_id=UUF03208.1;transl_table=11 CP098604.1 Genbank gene 922935 923438 . + . ID=gene-NDY25_04025;Name=NDY25_04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04025 CP098604.1 Protein Homology CDS 922935 923438 . + 0 ID=cds-UUF03209.1;Parent=gene-NDY25_04025;Dbxref=NCBI_GP:UUF03209.1;Name=UUF03209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156570.1;locus_tag=NDY25_04025;product=DUF2007 domain-containing protein;protein_id=UUF03209.1;transl_table=11 CP098604.1 Genbank pseudogene 923535 924726 . + . ID=gene-NDY25_04030;Name=NDY25_04030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04030;pseudo=true CP098604.1 Protein Homology CDS 923535 924726 . + 0 ID=cds-NDY25_04030;Parent=gene-NDY25_04030;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156569.1;locus_tag=NDY25_04030;product=sigma-70 family RNA polymerase sigma factor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 924918 925514 . - . ID=gene-NDY25_04035;Name=NDY25_04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04035 CP098604.1 Protein Homology CDS 924918 925514 . - 0 ID=cds-UUF03210.1;Parent=gene-NDY25_04035;Dbxref=NCBI_GP:UUF03210.1;Name=UUF03210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036342.1;locus_tag=NDY25_04035;product=EF-hand domain-containing protein;protein_id=UUF03210.1;transl_table=11 CP098604.1 Genbank gene 925555 926469 . + . ID=gene-NDY25_04040;Name=NDY25_04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04040 CP098604.1 Protein Homology CDS 925555 926469 . + 0 ID=cds-UUF04522.1;Parent=gene-NDY25_04040;Dbxref=NCBI_GP:UUF04522.1;Name=UUF04522.1;Ontology_term=GO:0016598,GO:0004057,GO:0008914;gbkey=CDS;go_function=arginyltransferase activity|0004057||IEA,leucyltransferase activity|0008914||IEA;go_process=protein arginylation|0016598||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944959.1;locus_tag=NDY25_04040;product=arginyltransferase;protein_id=UUF04522.1;transl_table=11 CP098604.1 Genbank gene 926522 927748 . + . ID=gene-NDY25_04045;Name=NDY25_04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04045 CP098604.1 Protein Homology CDS 926522 927748 . + 0 ID=cds-UUF03211.1;Parent=gene-NDY25_04045;Dbxref=NCBI_GP:UUF03211.1;Name=UUF03211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258384.1;locus_tag=NDY25_04045;product=endonuclease/exonuclease/phosphatase family protein;protein_id=UUF03211.1;transl_table=11 CP098604.1 Genbank gene 928006 928620 . + . ID=gene-NDY25_04050;Name=NDY25_04050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04050 CP098604.1 Protein Homology CDS 928006 928620 . + 0 ID=cds-UUF03212.1;Parent=gene-NDY25_04050;Dbxref=NCBI_GP:UUF03212.1;Name=UUF03212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346740.1;locus_tag=NDY25_04050;product=hypothetical protein;protein_id=UUF03212.1;transl_table=11 CP098604.1 Genbank gene 928645 929694 . + . ID=gene-NDY25_04055;Name=NDY25_04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04055 CP098604.1 Protein Homology CDS 928645 929694 . + 0 ID=cds-UUF03213.1;Parent=gene-NDY25_04055;Dbxref=NCBI_GP:UUF03213.1;Name=UUF03213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036338.1;locus_tag=NDY25_04055;product=hypothetical protein;protein_id=UUF03213.1;transl_table=11 CP098604.1 Genbank gene 929827 931029 . - . ID=gene-NDY25_04060;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=NDY25_04060 CP098604.1 Protein Homology CDS 929827 931029 . - 0 ID=cds-UUF03214.1;Parent=gene-NDY25_04060;Dbxref=NCBI_GP:UUF03214.1;Name=UUF03214.1;Ontology_term=GO:0009152,GO:0000287,GO:0004644,GO:0005524;gbkey=CDS;gene=purT;go_function=magnesium ion binding|0000287||IEA,phosphoribosylglycinamide formyltransferase activity|0004644||IEA,ATP binding|0005524||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472403.1;locus_tag=NDY25_04060;product=formate-dependent phosphoribosylglycinamide formyltransferase;protein_id=UUF03214.1;transl_table=11 CP098604.1 Genbank gene 931156 932022 . + . ID=gene-NDY25_04065;Name=NDY25_04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04065 CP098604.1 Protein Homology CDS 931156 932022 . + 0 ID=cds-UUF03215.1;Parent=gene-NDY25_04065;Dbxref=NCBI_GP:UUF03215.1;Name=UUF03215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507017.1;locus_tag=NDY25_04065;product=SPFH domain-containing protein;protein_id=UUF03215.1;transl_table=11 CP098604.1 Genbank gene 932032 932316 . + . ID=gene-NDY25_04070;Name=NDY25_04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04070 CP098604.1 Protein Homology CDS 932032 932316 . + 0 ID=cds-UUF03216.1;Parent=gene-NDY25_04070;Dbxref=NCBI_GP:UUF03216.1;Name=UUF03216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156562.1;locus_tag=NDY25_04070;product=hypothetical protein;protein_id=UUF03216.1;transl_table=11 CP098604.1 Genbank gene 932313 932492 . + . ID=gene-NDY25_04075;Name=NDY25_04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04075 CP098604.1 Protein Homology CDS 932313 932492 . + 0 ID=cds-UUF03217.1;Parent=gene-NDY25_04075;Dbxref=NCBI_GP:UUF03217.1;Name=UUF03217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036334.1;locus_tag=NDY25_04075;product=Arc family DNA binding domain-containing protein;protein_id=UUF03217.1;transl_table=11 CP098604.1 Genbank gene 932489 932668 . + . ID=gene-NDY25_04080;Name=NDY25_04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04080 CP098604.1 Protein Homology CDS 932489 932668 . + 0 ID=cds-UUF03218.1;Parent=gene-NDY25_04080;Dbxref=NCBI_GP:UUF03218.1;Name=UUF03218.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036333.1;locus_tag=NDY25_04080;product=DUF4177 domain-containing protein;protein_id=UUF03218.1;transl_table=11 CP098604.1 Genbank gene 932841 933641 . + . ID=gene-NDY25_04085;Name=NDY25_04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04085 CP098604.1 Protein Homology CDS 932841 933641 . + 0 ID=cds-UUF03219.1;Parent=gene-NDY25_04085;Dbxref=NCBI_GP:UUF03219.1;Name=UUF03219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450017.1;locus_tag=NDY25_04085;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=UUF03219.1;transl_table=11 CP098604.1 Genbank gene 933717 934391 . - . ID=gene-NDY25_04090;Name=NDY25_04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04090 CP098604.1 Protein Homology CDS 933717 934391 . - 0 ID=cds-UUF03220.1;Parent=gene-NDY25_04090;Dbxref=NCBI_GP:UUF03220.1;Name=UUF03220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574704.1;locus_tag=NDY25_04090;product=DNA-3-methyladenine glycosylase;protein_id=UUF03220.1;transl_table=11 CP098604.1 Genbank gene 934394 934780 . - . ID=gene-NDY25_04095;Name=NDY25_04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04095 CP098604.1 Protein Homology CDS 934394 934780 . - 0 ID=cds-UUF03221.1;Parent=gene-NDY25_04095;Dbxref=NCBI_GP:UUF03221.1;Name=UUF03221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574702.1;locus_tag=NDY25_04095;product=DUF423 domain-containing protein;protein_id=UUF03221.1;transl_table=11 CP098604.1 Genbank gene 934862 936031 . - . ID=gene-NDY25_04100;Name=NDY25_04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04100 CP098604.1 Protein Homology CDS 934862 936031 . - 0 ID=cds-UUF03222.1;Parent=gene-NDY25_04100;Dbxref=NCBI_GP:UUF03222.1;Name=UUF03222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117313.1;locus_tag=NDY25_04100;product=SRPBCC family protein;protein_id=UUF03222.1;transl_table=11 CP098604.1 Genbank gene 936433 937074 . - . ID=gene-NDY25_04105;Name=NDY25_04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04105 CP098604.1 Protein Homology CDS 936433 937074 . - 0 ID=cds-UUF03223.1;Parent=gene-NDY25_04105;Dbxref=NCBI_GP:UUF03223.1;Name=UUF03223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807809.1;locus_tag=NDY25_04105;product=response regulator transcription factor;protein_id=UUF03223.1;transl_table=11 CP098604.1 Genbank gene 937075 938271 . - . ID=gene-NDY25_04110;Name=NDY25_04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04110 CP098604.1 Protein Homology CDS 937075 938271 . - 0 ID=cds-UUF03224.1;Parent=gene-NDY25_04110;Dbxref=NCBI_GP:UUF03224.1;Name=UUF03224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901692.1;locus_tag=NDY25_04110;product=sensor histidine kinase;protein_id=UUF03224.1;transl_table=11 CP098604.1 Genbank gene 938491 939090 . + . ID=gene-NDY25_04115;Name=NDY25_04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04115 CP098604.1 Protein Homology CDS 938491 939090 . + 0 ID=cds-UUF03225.1;Parent=gene-NDY25_04115;Dbxref=NCBI_GP:UUF03225.1;Name=UUF03225.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156556.1;locus_tag=NDY25_04115;product=GNAT family N-acetyltransferase;protein_id=UUF03225.1;transl_table=11 CP098604.1 Genbank gene 939094 939840 . + . ID=gene-NDY25_04120;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=NDY25_04120 CP098604.1 Protein Homology CDS 939094 939840 . + 0 ID=cds-UUF03226.1;Parent=gene-NDY25_04120;Dbxref=NCBI_GP:UUF03226.1;Name=UUF03226.1;Ontology_term=GO:0000918,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973818.1;locus_tag=NDY25_04120;product=septum site-determining protein MinC;protein_id=UUF03226.1;transl_table=11 CP098604.1 Genbank gene 939877 940686 . + . ID=gene-NDY25_04125;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=NDY25_04125 CP098604.1 Protein Homology CDS 939877 940686 . + 0 ID=cds-UUF03227.1;Parent=gene-NDY25_04125;Dbxref=NCBI_GP:UUF03227.1;Name=UUF03227.1;Ontology_term=GO:0000918,GO:0016887;gbkey=CDS;gene=minD;go_function=ATP hydrolysis activity|0016887||IEA;go_process=division septum site selection|0000918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006424120.1;locus_tag=NDY25_04125;product=septum site-determining protein MinD;protein_id=UUF03227.1;transl_table=11 CP098604.1 Genbank gene 940689 940946 . + . ID=gene-NDY25_04130;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=NDY25_04130 CP098604.1 Protein Homology CDS 940689 940946 . + 0 ID=cds-UUF03228.1;Parent=gene-NDY25_04130;Dbxref=NCBI_GP:UUF03228.1;Name=UUF03228.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036323.1;locus_tag=NDY25_04130;product=cell division topological specificity factor MinE;protein_id=UUF03228.1;transl_table=11 CP098604.1 Genbank gene 941090 941581 . + . ID=gene-NDY25_04135;Name=NDY25_04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04135 CP098604.1 Protein Homology CDS 941090 941581 . + 0 ID=cds-UUF04523.1;Parent=gene-NDY25_04135;Dbxref=NCBI_GP:UUF04523.1;Name=UUF04523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807800.1;locus_tag=NDY25_04135;product=hypothetical protein;protein_id=UUF04523.1;transl_table=11 CP098604.1 Genbank gene 941751 943049 . - . ID=gene-NDY25_04140;Name=NDY25_04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04140 CP098604.1 Protein Homology CDS 941751 943049 . - 0 ID=cds-UUF03229.1;Parent=gene-NDY25_04140;Dbxref=NCBI_GP:UUF03229.1;Name=UUF03229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450027.1;locus_tag=NDY25_04140;product=HAMP domain-containing histidine kinase;protein_id=UUF03229.1;transl_table=11 CP098604.1 Genbank gene 943042 943758 . - . ID=gene-NDY25_04145;Name=NDY25_04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04145 CP098604.1 Protein Homology CDS 943042 943758 . - 0 ID=cds-UUF03230.1;Parent=gene-NDY25_04145;Dbxref=NCBI_GP:UUF03230.1;Name=UUF03230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450028.1;locus_tag=NDY25_04145;product=response regulator transcription factor;protein_id=UUF03230.1;transl_table=11 CP098604.1 Genbank gene 943895 945628 . + . ID=gene-NDY25_04150;Name=NDY25_04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04150 CP098604.1 Protein Homology CDS 943895 945628 . + 0 ID=cds-UUF03231.1;Parent=gene-NDY25_04150;Dbxref=NCBI_GP:UUF03231.1;Name=UUF03231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930293.1;locus_tag=NDY25_04150;product=glycosyltransferase family 39 protein;protein_id=UUF03231.1;transl_table=11 CP098604.1 Genbank gene 945727 946491 . + . ID=gene-NDY25_04155;Name=NDY25_04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04155 CP098604.1 Protein Homology CDS 945727 946491 . + 0 ID=cds-UUF03232.1;Parent=gene-NDY25_04155;Dbxref=NCBI_GP:UUF03232.1;Name=UUF03232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089620.1;locus_tag=NDY25_04155;product=phosphatase PAP2 family protein;protein_id=UUF03232.1;transl_table=11 CP098604.1 Genbank gene 946488 948143 . + . ID=gene-NDY25_04160;Name=NDY25_04160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04160 CP098604.1 Protein Homology CDS 946488 948143 . + 0 ID=cds-UUF03233.1;Parent=gene-NDY25_04160;Dbxref=NCBI_GP:UUF03233.1;Name=UUF03233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036317.1;locus_tag=NDY25_04160;product=phosphoethanolamine transferase;protein_id=UUF03233.1;transl_table=11 CP098604.1 Genbank gene 948958 950982 . + . ID=gene-NDY25_04165;Name=NDY25_04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04165 CP098604.1 Protein Homology CDS 948958 950982 . + 0 ID=cds-UUF03234.1;Parent=gene-NDY25_04165;Dbxref=NCBI_GP:UUF03234.1;Name=UUF03234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452790.1;locus_tag=NDY25_04165;product=M2 family metallopeptidase;protein_id=UUF03234.1;transl_table=11 CP098604.1 Genbank gene 951114 953048 . + . ID=gene-NDY25_04170;Name=NDY25_04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04170 CP098604.1 Protein Homology CDS 951114 953048 . + 0 ID=cds-UUF03235.1;Parent=gene-NDY25_04170;Dbxref=NCBI_GP:UUF03235.1;Name=UUF03235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452791.1;locus_tag=NDY25_04170;product=hypothetical protein;protein_id=UUF03235.1;transl_table=11 CP098604.1 Genbank gene 953283 953684 . - . ID=gene-NDY25_04175;Name=NDY25_04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04175 CP098604.1 Protein Homology CDS 953283 953684 . - 0 ID=cds-UUF03236.1;Parent=gene-NDY25_04175;Dbxref=NCBI_GP:UUF03236.1;Name=UUF03236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452792.1;locus_tag=NDY25_04175;product=hypothetical protein;protein_id=UUF03236.1;transl_table=11 CP098604.1 Genbank gene 953701 954954 . - . ID=gene-NDY25_04180;Name=NDY25_04180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04180 CP098604.1 Protein Homology CDS 953701 954954 . - 0 ID=cds-UUF03237.1;Parent=gene-NDY25_04180;Dbxref=NCBI_GP:UUF03237.1;Name=UUF03237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164622.1;locus_tag=NDY25_04180;product=multidrug effflux MFS transporter;protein_id=UUF03237.1;transl_table=11 CP098604.1 cmsearch riboswitch 955222 955336 . + . ID=id-CP098604.1:955222..955336;Dbxref=RFAM:RF00504;Note=glycine riboswitch;bound_moiety=glycine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 955426 958299 . + . ID=gene-NDY25_04185;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=NDY25_04185 CP098604.1 Protein Homology CDS 955426 958299 . + 0 ID=cds-UUF03238.1;Parent=gene-NDY25_04185;Dbxref=NCBI_GP:UUF03238.1;Name=UUF03238.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172050.1;locus_tag=NDY25_04185;product=aminomethyl-transferring glycine dehydrogenase;protein_id=UUF03238.1;transl_table=11 CP098604.1 Genbank gene 958622 960250 . + . ID=gene-NDY25_04190;Name=NDY25_04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04190 CP098604.1 Protein Homology CDS 958622 960250 . + 0 ID=cds-UUF03239.1;Parent=gene-NDY25_04190;Dbxref=NCBI_GP:UUF03239.1;Name=UUF03239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448823.1;locus_tag=NDY25_04190;product=carboxylesterase family protein;protein_id=UUF03239.1;transl_table=11 CP098604.1 Genbank gene 960311 961165 . + . ID=gene-NDY25_04195;Name=NDY25_04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04195 CP098604.1 Protein Homology CDS 960311 961165 . + 0 ID=cds-UUF03240.1;Parent=gene-NDY25_04195;Dbxref=NCBI_GP:UUF03240.1;Name=UUF03240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050780.1;locus_tag=NDY25_04195;product=aldo/keto reductase;protein_id=UUF03240.1;transl_table=11 CP098604.1 Genbank gene 961411 961484 . + . ID=gene-NDY25_04200;Name=NDY25_04200;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_04200 CP098604.1 cmsearch ncRNA 961411 961484 . + . ID=rna-NDY25_04200;Parent=gene-NDY25_04200;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_04200;product=sX9 sRNA CP098604.1 cmsearch exon 961411 961484 . + . ID=exon-NDY25_04200-1;Parent=rna-NDY25_04200;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_04200;product=sX9 sRNA CP098604.1 Genbank gene 961511 963619 . + . ID=gene-NDY25_04205;Name=NDY25_04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04205 CP098604.1 Protein Homology CDS 961511 963619 . + 0 ID=cds-UUF03241.1;Parent=gene-NDY25_04205;Dbxref=NCBI_GP:UUF03241.1;Name=UUF03241.1;Ontology_term=GO:0004096,GO:0020037;gbkey=CDS;go_function=catalase activity|0004096||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154698.1;locus_tag=NDY25_04205;product=catalase;protein_id=UUF03241.1;transl_table=11 CP098604.1 Genbank gene 964317 965051 . - . ID=gene-NDY25_04210;Name=NDY25_04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04210 CP098604.1 Protein Homology CDS 964317 965051 . - 0 ID=cds-UUF03242.1;Parent=gene-NDY25_04210;Dbxref=NCBI_GP:UUF03242.1;Name=UUF03242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371630.1;locus_tag=NDY25_04210;product=AraC family transcriptional regulator;protein_id=UUF03242.1;transl_table=11 CP098604.1 Genbank gene 965184 965666 . - . ID=gene-NDY25_04215;Name=NDY25_04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04215 CP098604.1 Protein Homology CDS 965184 965666 . - 0 ID=cds-UUF03243.1;Parent=gene-NDY25_04215;Dbxref=NCBI_GP:UUF03243.1;Name=UUF03243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346711.1;locus_tag=NDY25_04215;product=hypothetical protein;protein_id=UUF03243.1;transl_table=11 CP098604.1 Genbank gene 965988 968108 . - . ID=gene-NDY25_04220;Name=NDY25_04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04220 CP098604.1 Protein Homology CDS 965988 968108 . - 0 ID=cds-UUF03244.1;Parent=gene-NDY25_04220;Dbxref=NCBI_GP:UUF03244.1;Name=UUF03244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169463.1;locus_tag=NDY25_04220;product=S9 family peptidase;protein_id=UUF03244.1;transl_table=11 CP098604.1 Genbank gene 968475 969317 . - . ID=gene-NDY25_04225;Name=NDY25_04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04225 CP098604.1 Protein Homology CDS 968475 969317 . - 0 ID=cds-UUF04524.1;Parent=gene-NDY25_04225;Dbxref=NCBI_GP:UUF04524.1;Name=UUF04524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158565.1;locus_tag=NDY25_04225;product=transporter;protein_id=UUF04524.1;transl_table=11 CP098604.1 Genbank gene 969866 971836 . - . ID=gene-NDY25_04230;Name=NDY25_04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04230 CP098604.1 Protein Homology CDS 969866 971836 . - 0 ID=cds-UUF03245.1;Parent=gene-NDY25_04230;Dbxref=NCBI_GP:UUF03245.1;Name=UUF03245.1;Ontology_term=GO:0006857,GO:0035673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=oligopeptide transmembrane transporter activity|0035673||IEA;go_process=oligopeptide transport|0006857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346708.1;locus_tag=NDY25_04230;product=oligopeptide transporter%2C OPT family;protein_id=UUF03245.1;transl_table=11 CP098604.1 Genbank gene 972094 972726 . + . ID=gene-NDY25_04235;Name=NDY25_04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04235 CP098604.1 Protein Homology CDS 972094 972726 . + 0 ID=cds-UUF03246.1;Parent=gene-NDY25_04235;Dbxref=NCBI_GP:UUF03246.1;Name=UUF03246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375779.1;locus_tag=NDY25_04235;product=DUF3757 domain-containing protein;protein_id=UUF03246.1;transl_table=11 CP098604.1 Genbank gene 972764 973582 . - . ID=gene-NDY25_04240;Name=NDY25_04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04240 CP098604.1 Protein Homology CDS 972764 973582 . - 0 ID=cds-UUF03247.1;Parent=gene-NDY25_04240;Dbxref=NCBI_GP:UUF03247.1;Name=UUF03247.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814392.1;locus_tag=NDY25_04240;product=HDOD domain-containing protein;protein_id=UUF03247.1;transl_table=11 CP098604.1 Genbank pseudogene 973930 977189 . - . ID=gene-NDY25_04245;Name=NDY25_04245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04245;pseudo=true CP098604.1 Protein Homology CDS 973930 977189 . - 0 ID=cds-NDY25_04245;Parent=gene-NDY25_04245;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445640.1;locus_tag=NDY25_04245;product=error-prone DNA polymerase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 977356 978774 . - . ID=gene-NDY25_04250;Name=NDY25_04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04250 CP098604.1 Protein Homology CDS 977356 978774 . - 0 ID=cds-UUF03248.1;Parent=gene-NDY25_04250;Dbxref=NCBI_GP:UUF03248.1;Name=UUF03248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502328.1;locus_tag=NDY25_04250;product=DNA polymerase Y family protein;protein_id=UUF03248.1;transl_table=11 CP098604.1 Genbank gene 978784 979437 . - . ID=gene-NDY25_04255;Name=imuA;gbkey=Gene;gene=imuA;gene_biotype=protein_coding;locus_tag=NDY25_04255 CP098604.1 Protein Homology CDS 978784 979437 . - 0 ID=cds-UUF03249.1;Parent=gene-NDY25_04255;Dbxref=NCBI_GP:UUF03249.1;Name=UUF03249.1;Ontology_term=GO:0009432,GO:0051782;gbkey=CDS;gene=imuA;go_process=SOS response|0009432||IEA,negative regulation of cell division|0051782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116014.1;locus_tag=NDY25_04255;product=translesion DNA synthesis-associated protein ImuA;protein_id=UUF03249.1;transl_table=11 CP098604.1 Genbank gene 979439 980056 . - . ID=gene-NDY25_04260;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=NDY25_04260 CP098604.1 Protein Homology CDS 979439 980056 . - 0 ID=cds-UUF03250.1;Parent=gene-NDY25_04260;Dbxref=NCBI_GP:UUF03250.1;Name=UUF03250.1;Ontology_term=GO:0006282,GO:0006355,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=regulation of DNA repair|0006282||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971824.1;locus_tag=NDY25_04260;product=transcriptional repressor LexA;protein_id=UUF03250.1;transl_table=11 CP098604.1 Genbank gene 980215 980436 . + . ID=gene-NDY25_04265;Name=NDY25_04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04265 CP098604.1 Protein Homology CDS 980215 980436 . + 0 ID=cds-UUF03251.1;Parent=gene-NDY25_04265;Dbxref=NCBI_GP:UUF03251.1;Name=UUF03251.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302153.1;locus_tag=NDY25_04265;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=UUF03251.1;transl_table=11 CP098604.1 Genbank gene 980445 980870 . + . ID=gene-NDY25_04270;Name=NDY25_04270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04270 CP098604.1 Protein Homology CDS 980445 980870 . + 0 ID=cds-UUF04525.1;Parent=gene-NDY25_04270;Dbxref=NCBI_GP:UUF04525.1;Name=UUF04525.1;Ontology_term=GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157899.1;locus_tag=NDY25_04270;product=type II toxin-antitoxin system death-on-curing family toxin;protein_id=UUF04525.1;transl_table=11 CP098604.1 Genbank gene 981111 982415 . - . ID=gene-NDY25_04275;Name=NDY25_04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04275 CP098604.1 Protein Homology CDS 981111 982415 . - 0 ID=cds-UUF03252.1;Parent=gene-NDY25_04275;Dbxref=NCBI_GP:UUF03252.1;Name=UUF03252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922134.1;locus_tag=NDY25_04275;product=endonuclease;protein_id=UUF03252.1;transl_table=11 CP098604.1 Genbank gene 982525 983865 . - . ID=gene-NDY25_04280;Name=NDY25_04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04280 CP098604.1 Protein Homology CDS 982525 983865 . - 0 ID=cds-UUF04526.1;Parent=gene-NDY25_04280;Dbxref=NCBI_GP:UUF04526.1;Name=UUF04526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450809.1;locus_tag=NDY25_04280;product=histidine-type phosphatase;protein_id=UUF04526.1;transl_table=11 CP098604.1 Genbank gene 984180 987077 . - . ID=gene-NDY25_04285;Name=NDY25_04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04285 CP098604.1 Protein Homology CDS 984180 987077 . - 0 ID=cds-UUF03253.1;Parent=gene-NDY25_04285;Dbxref=NCBI_GP:UUF03253.1;Name=UUF03253.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341328.1;locus_tag=NDY25_04285;product=TonB-dependent receptor;protein_id=UUF03253.1;transl_table=11 CP098604.1 Genbank pseudogene 987275 988289 . - . ID=gene-NDY25_04290;Name=NDY25_04290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04290;pseudo=true CP098604.1 Protein Homology CDS 987275 988289 . - 0 ID=cds-NDY25_04290;Parent=gene-NDY25_04290;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450811.1;locus_tag=NDY25_04290;product=FecR domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 988355 988879 . - . ID=gene-NDY25_04295;Name=NDY25_04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04295 CP098604.1 Protein Homology CDS 988355 988879 . - 0 ID=cds-UUF03254.1;Parent=gene-NDY25_04295;Dbxref=NCBI_GP:UUF03254.1;Name=UUF03254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156343.1;locus_tag=NDY25_04295;product=RNA polymerase sigma factor;protein_id=UUF03254.1;transl_table=11 CP098604.1 Genbank gene 989171 989749 . + . ID=gene-NDY25_04300;Name=NDY25_04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04300 CP098604.1 Protein Homology CDS 989171 989749 . + 0 ID=cds-UUF03255.1;Parent=gene-NDY25_04300;Dbxref=NCBI_GP:UUF03255.1;Name=UUF03255.1;Ontology_term=GO:0016491,GO:0046872;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920580.1;locus_tag=NDY25_04300;product=2Fe-2S iron-sulfur cluster-binding protein;protein_id=UUF03255.1;transl_table=11 CP098604.1 Genbank gene 989722 990807 . + . ID=gene-NDY25_04305;Name=NDY25_04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04305 CP098604.1 Protein Homology CDS 989722 990807 . + 0 ID=cds-UUF03256.1;Parent=gene-NDY25_04305;Dbxref=NCBI_GP:UUF03256.1;Name=UUF03256.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997505.1;locus_tag=NDY25_04305;product=xanthine dehydrogenase family protein subunit M;protein_id=UUF03256.1;transl_table=11 CP098604.1 Genbank gene 990804 993101 . + . ID=gene-NDY25_04310;Name=NDY25_04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04310 CP098604.1 Protein Homology CDS 990804 993101 . + 0 ID=cds-UUF03257.1;Parent=gene-NDY25_04310;Dbxref=NCBI_GP:UUF03257.1;Name=UUF03257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490087.1;locus_tag=NDY25_04310;product=xanthine dehydrogenase family protein molybdopterin-binding subunit;protein_id=UUF03257.1;transl_table=11 CP098604.1 Genbank gene 993201 993851 . - . ID=gene-NDY25_04315;Name=NDY25_04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04315 CP098604.1 Protein Homology CDS 993201 993851 . - 0 ID=cds-UUF03258.1;Parent=gene-NDY25_04315;Dbxref=NCBI_GP:UUF03258.1;Name=UUF03258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506964.1;locus_tag=NDY25_04315;product=TetR/AcrR family transcriptional regulator;protein_id=UUF03258.1;transl_table=11 CP098604.1 Genbank gene 993984 995057 . + . ID=gene-NDY25_04320;Name=NDY25_04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04320 CP098604.1 Protein Homology CDS 993984 995057 . + 0 ID=cds-UUF03259.1;Parent=gene-NDY25_04320;Dbxref=NCBI_GP:UUF03259.1;Name=UUF03259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997509.1;locus_tag=NDY25_04320;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=UUF03259.1;transl_table=11 CP098604.1 Genbank gene 995140 997425 . + . ID=gene-NDY25_04325;Name=NDY25_04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04325 CP098604.1 Protein Homology CDS 995140 997425 . + 0 ID=cds-UUF03260.1;Parent=gene-NDY25_04325;Dbxref=NCBI_GP:UUF03260.1;Name=UUF03260.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017916167.1;locus_tag=NDY25_04325;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=UUF03260.1;transl_table=11 CP098604.1 Genbank gene 997811 1000177 . - . ID=gene-NDY25_04330;Name=NDY25_04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04330 CP098604.1 GeneMarkS-2+ CDS 997811 1000177 . - 0 ID=cds-UUF03261.1;Parent=gene-NDY25_04330;Dbxref=NCBI_GP:UUF03261.1;Name=UUF03261.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04330;product=hypothetical protein;protein_id=UUF03261.1;transl_table=11 CP098604.1 Genbank gene 1000298 1003732 . - . ID=gene-NDY25_04335;Name=NDY25_04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04335 CP098604.1 GeneMarkS-2+ CDS 1000298 1003732 . - 0 ID=cds-UUF03262.1;Parent=gene-NDY25_04335;Dbxref=NCBI_GP:UUF03262.1;Name=UUF03262.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04335;product=hypothetical protein;protein_id=UUF03262.1;transl_table=11 CP098604.1 Genbank gene 1004492 1007068 . - . ID=gene-NDY25_04340;Name=NDY25_04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04340 CP098604.1 Protein Homology CDS 1004492 1007068 . - 0 ID=cds-UUF03263.1;Parent=gene-NDY25_04340;Dbxref=NCBI_GP:UUF03263.1;Name=UUF03263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452219.1;locus_tag=NDY25_04340;product=excinuclease ABC subunit UvrA;protein_id=UUF03263.1;transl_table=11 CP098604.1 Genbank gene 1007778 1008416 . - . ID=gene-NDY25_04345;Name=NDY25_04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04345 CP098604.1 Protein Homology CDS 1007778 1008416 . - 0 ID=cds-UUF03264.1;Parent=gene-NDY25_04345;Dbxref=NCBI_GP:UUF03264.1;Name=UUF03264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346691.1;locus_tag=NDY25_04345;product=HD domain-containing protein;protein_id=UUF03264.1;transl_table=11 CP098604.1 Genbank gene 1008563 1009309 . + . ID=gene-NDY25_04350;Name=NDY25_04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04350 CP098604.1 Protein Homology CDS 1008563 1009309 . + 0 ID=cds-UUF03265.1;Parent=gene-NDY25_04350;Dbxref=NCBI_GP:UUF03265.1;Name=UUF03265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172503.1;locus_tag=NDY25_04350;product=EAL domain-containing protein;protein_id=UUF03265.1;transl_table=11 CP098604.1 Genbank gene 1009518 1009823 . - . ID=gene-NDY25_04355;Name=NDY25_04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04355 CP098604.1 Protein Homology CDS 1009518 1009823 . - 0 ID=cds-UUF03266.1;Parent=gene-NDY25_04355;Dbxref=NCBI_GP:UUF03266.1;Name=UUF03266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490091.1;locus_tag=NDY25_04355;product=UBP-type zinc finger domain-containing protein;protein_id=UUF03266.1;transl_table=11 CP098604.1 Genbank gene 1009820 1011529 . - . ID=gene-NDY25_04360;Name=NDY25_04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04360 CP098604.1 Protein Homology CDS 1009820 1011529 . - 0 ID=cds-UUF03267.1;Parent=gene-NDY25_04360;Dbxref=NCBI_GP:UUF03267.1;Name=UUF03267.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159705.1;locus_tag=NDY25_04360;product=FAD-dependent oxidoreductase;protein_id=UUF03267.1;transl_table=11 CP098604.1 Genbank gene 1011743 1012372 . - . ID=gene-NDY25_04365;Name=NDY25_04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04365 CP098604.1 Protein Homology CDS 1011743 1012372 . - 0 ID=cds-UUF03268.1;Parent=gene-NDY25_04365;Dbxref=NCBI_GP:UUF03268.1;Name=UUF03268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990935.1;locus_tag=NDY25_04365;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=UUF03268.1;transl_table=11 CP098604.1 Genbank gene 1012546 1014900 . + . ID=gene-NDY25_04370;Name=NDY25_04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04370 CP098604.1 Protein Homology CDS 1012546 1014900 . + 0 ID=cds-UUF03269.1;Parent=gene-NDY25_04370;Dbxref=NCBI_GP:UUF03269.1;Name=UUF03269.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449277.1;locus_tag=NDY25_04370;product=GH92 family glycosyl hydrolase;protein_id=UUF03269.1;transl_table=11 CP098604.1 Genbank gene 1014902 1015609 . - . ID=gene-NDY25_04375;Name=NDY25_04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04375 CP098604.1 Protein Homology CDS 1014902 1015609 . - 0 ID=cds-UUF03270.1;Parent=gene-NDY25_04375;Dbxref=NCBI_GP:UUF03270.1;Name=UUF03270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449279.1;locus_tag=NDY25_04375;product=DUF429 domain-containing protein;protein_id=UUF03270.1;transl_table=11 CP098604.1 Genbank gene 1015793 1016695 . + . ID=gene-NDY25_04380;Name=NDY25_04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04380 CP098604.1 Protein Homology CDS 1015793 1016695 . + 0 ID=cds-UUF03271.1;Parent=gene-NDY25_04380;Dbxref=NCBI_GP:UUF03271.1;Name=UUF03271.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506951.1;locus_tag=NDY25_04380;product=SDR family oxidoreductase;protein_id=UUF03271.1;transl_table=11 CP098604.1 Genbank gene 1017002 1018462 . - . ID=gene-NDY25_04385;Name=NDY25_04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04385 CP098604.1 Protein Homology CDS 1017002 1018462 . - 0 ID=cds-UUF03272.1;Parent=gene-NDY25_04385;Dbxref=NCBI_GP:UUF03272.1;Name=UUF03272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368472.1;locus_tag=NDY25_04385;product=glycosyl hydrolase;protein_id=UUF03272.1;transl_table=11 CP098604.1 Genbank gene 1018943 1019818 . - . ID=gene-NDY25_04390;Name=NDY25_04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04390 CP098604.1 Protein Homology CDS 1018943 1019818 . - 0 ID=cds-UUF03273.1;Parent=gene-NDY25_04390;Dbxref=NCBI_GP:UUF03273.1;Name=UUF03273.1;Ontology_term=GO:0052855;gbkey=CDS;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811336.1;locus_tag=NDY25_04390;product=NAD(P)H-hydrate dehydratase;protein_id=UUF03273.1;transl_table=11 CP098604.1 Genbank gene 1019818 1020597 . - . ID=gene-NDY25_04395;Name=NDY25_04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04395 CP098604.1 Protein Homology CDS 1019818 1020597 . - 0 ID=cds-UUF04527.1;Parent=gene-NDY25_04395;Dbxref=NCBI_GP:UUF04527.1;Name=UUF04527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490632.1;locus_tag=NDY25_04395;product=histidine phosphatase family protein;protein_id=UUF04527.1;transl_table=11 CP098604.1 Genbank gene 1020769 1021398 . + . ID=gene-NDY25_04400;Name=NDY25_04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04400 CP098604.1 Protein Homology CDS 1020769 1021398 . + 0 ID=cds-UUF03274.1;Parent=gene-NDY25_04400;Dbxref=NCBI_GP:UUF03274.1;Name=UUF03274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903342.1;locus_tag=NDY25_04400;product=TetR/AcrR family transcriptional regulator;protein_id=UUF03274.1;transl_table=11 CP098604.1 Genbank gene 1021463 1022212 . - . ID=gene-NDY25_04405;Name=NDY25_04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04405 CP098604.1 Protein Homology CDS 1021463 1022212 . - 0 ID=cds-UUF03275.1;Parent=gene-NDY25_04405;Dbxref=NCBI_GP:UUF03275.1;Name=UUF03275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449287.1;locus_tag=NDY25_04405;product=hypothetical protein;protein_id=UUF03275.1;transl_table=11 CP098604.1 Genbank gene 1022337 1023026 . - . ID=gene-NDY25_04410;Name=NDY25_04410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04410 CP098604.1 Protein Homology CDS 1022337 1023026 . - 0 ID=cds-UUF03276.1;Parent=gene-NDY25_04410;Dbxref=NCBI_GP:UUF03276.1;Name=UUF03276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269951.1;locus_tag=NDY25_04410;product=hypothetical protein;protein_id=UUF03276.1;transl_table=11 CP098604.1 Genbank gene 1023562 1024902 . + . ID=gene-NDY25_04415;Name=NDY25_04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04415 CP098604.1 Protein Homology CDS 1023562 1024902 . + 0 ID=cds-UUF03277.1;Parent=gene-NDY25_04415;Dbxref=NCBI_GP:UUF03277.1;Name=UUF03277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439010.1;locus_tag=NDY25_04415;product=nucleoside hydrolase;protein_id=UUF03277.1;transl_table=11 CP098604.1 Genbank pseudogene 1024965 1025330 . + . ID=gene-NDY25_04420;Name=NDY25_04420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04420;pseudo=true CP098604.1 Protein Homology CDS 1024965 1025330 . + 0 ID=cds-NDY25_04420;Parent=gene-NDY25_04420;Note=incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802850.1;locus_tag=NDY25_04420;product=transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1025351 1025536 . - . ID=gene-NDY25_04425;Name=NDY25_04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04425 CP098604.1 GeneMarkS-2+ CDS 1025351 1025536 . - 0 ID=cds-UUF03278.1;Parent=gene-NDY25_04425;Dbxref=NCBI_GP:UUF03278.1;Name=UUF03278.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04425;product=hypothetical protein;protein_id=UUF03278.1;transl_table=11 CP098604.1 Genbank gene 1025601 1026416 . + . ID=gene-NDY25_04430;Name=NDY25_04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04430 CP098604.1 Protein Homology CDS 1025601 1026416 . + 0 ID=cds-UUF03279.1;Parent=gene-NDY25_04430;Dbxref=NCBI_GP:UUF03279.1;Name=UUF03279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157176.1;locus_tag=NDY25_04430;product=C1 family peptidase;protein_id=UUF03279.1;transl_table=11 CP098604.1 Genbank gene 1027029 1027667 . + . ID=gene-NDY25_04435;Name=NDY25_04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04435 CP098604.1 Protein Homology CDS 1027029 1027667 . + 0 ID=cds-UUF03280.1;Parent=gene-NDY25_04435;Dbxref=NCBI_GP:UUF03280.1;Name=UUF03280.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026241.2;locus_tag=NDY25_04435;product=type III secretion system effector protein;protein_id=UUF03280.1;transl_table=11 CP098604.1 Genbank gene 1027862 1028131 . - . ID=gene-NDY25_04440;Name=NDY25_04440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04440 CP098604.1 Protein Homology CDS 1027862 1028131 . - 0 ID=cds-UUF03281.1;Parent=gene-NDY25_04440;Dbxref=NCBI_GP:UUF03281.1;Name=UUF03281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269953.1;locus_tag=NDY25_04440;product=hypothetical protein;protein_id=UUF03281.1;transl_table=11 CP098604.1 Genbank gene 1028128 1028424 . - . ID=gene-NDY25_04445;Name=NDY25_04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04445 CP098604.1 Protein Homology CDS 1028128 1028424 . - 0 ID=cds-UUF03282.1;Parent=gene-NDY25_04445;Dbxref=NCBI_GP:UUF03282.1;Name=UUF03282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269954.1;locus_tag=NDY25_04445;product=hypothetical protein;protein_id=UUF03282.1;transl_table=11 CP098604.1 Genbank gene 1028840 1030057 . - . ID=gene-NDY25_04450;Name=NDY25_04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04450 CP098604.1 Protein Homology CDS 1028840 1030057 . - 0 ID=cds-UUF03283.1;Parent=gene-NDY25_04450;Dbxref=NCBI_GP:UUF03283.1;Name=UUF03283.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF024754.2;locus_tag=NDY25_04450;product=UvrD-helicase domain-containing protein;protein_id=UUF03283.1;transl_table=11 CP098604.1 Genbank gene 1030021 1030917 . - . ID=gene-NDY25_04455;Name=NDY25_04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04455 CP098604.1 GeneMarkS-2+ CDS 1030021 1030917 . - 0 ID=cds-UUF03284.1;Parent=gene-NDY25_04455;Dbxref=NCBI_GP:UUF03284.1;Name=UUF03284.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04455;product=hypothetical protein;protein_id=UUF03284.1;transl_table=11 CP098604.1 Genbank gene 1031309 1031746 . - . ID=gene-NDY25_04460;Name=NDY25_04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04460 CP098604.1 GeneMarkS-2+ CDS 1031309 1031746 . - 0 ID=cds-UUF03285.1;Parent=gene-NDY25_04460;Dbxref=NCBI_GP:UUF03285.1;Name=UUF03285.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04460;product=hypothetical protein;protein_id=UUF03285.1;transl_table=11 CP098604.1 Genbank gene 1031743 1032408 . - . ID=gene-NDY25_04465;Name=NDY25_04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04465 CP098604.1 GeneMarkS-2+ CDS 1031743 1032408 . - 0 ID=cds-UUF03286.1;Parent=gene-NDY25_04465;Dbxref=NCBI_GP:UUF03286.1;Name=UUF03286.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04465;product=hypothetical protein;protein_id=UUF03286.1;transl_table=11 CP098604.1 Genbank gene 1032568 1035024 . - . ID=gene-NDY25_04470;Name=NDY25_04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04470 CP098604.1 Protein Homology CDS 1032568 1035024 . - 0 ID=cds-UUF03287.1;Parent=gene-NDY25_04470;Dbxref=NCBI_GP:UUF03287.1;Name=UUF03287.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013704.2;locus_tag=NDY25_04470;product=site-specific DNA-methyltransferase;protein_id=UUF03287.1;transl_table=11 CP098604.1 Genbank gene 1035021 1035347 . - . ID=gene-NDY25_04475;Name=NDY25_04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04475 CP098604.1 GeneMarkS-2+ CDS 1035021 1035347 . - 0 ID=cds-UUF03288.1;Parent=gene-NDY25_04475;Dbxref=NCBI_GP:UUF03288.1;Name=UUF03288.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04475;product=hypothetical protein;protein_id=UUF03288.1;transl_table=11 CP098604.1 Genbank gene 1035359 1038316 . - . ID=gene-NDY25_04480;Name=NDY25_04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04480 CP098604.1 Protein Homology CDS 1035359 1038316 . - 0 ID=cds-UUF03289.1;Parent=gene-NDY25_04480;Dbxref=NCBI_GP:UUF03289.1;Name=UUF03289.1;Ontology_term=GO:0003677,GO:0005524,GO:0016787;gbkey=CDS;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036267.1;locus_tag=NDY25_04480;product=DEAD/DEAH box helicase family protein;protein_id=UUF03289.1;transl_table=11 CP098604.1 Genbank gene 1038310 1039072 . - . ID=gene-NDY25_04485;Name=NDY25_04485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04485 CP098604.1 Protein Homology CDS 1038753 1039072 . - 0 ID=cds-UUF04528.1;Parent=gene-NDY25_04485;Dbxref=NCBI_GP:UUF04528.1;Name=UUF04528.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_04485;product=IS5 family transposase;protein_id=UUF04528.1;transl_table=11 CP098604.1 Protein Homology CDS 1038310 1038754 . - 1 ID=cds-UUF04528.1;Parent=gene-NDY25_04485;Dbxref=NCBI_GP:UUF04528.1;Name=UUF04528.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_04485;product=IS5 family transposase;protein_id=UUF04528.1;transl_table=11 CP098604.1 Genbank gene 1039322 1039630 . - . ID=gene-NDY25_04490;Name=NDY25_04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04490 CP098604.1 Protein Homology CDS 1039322 1039630 . - 0 ID=cds-UUF03290.1;Parent=gene-NDY25_04490;Dbxref=NCBI_GP:UUF03290.1;Name=UUF03290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303839.1;locus_tag=NDY25_04490;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=UUF03290.1;transl_table=11 CP098604.1 Genbank gene 1039637 1039900 . - . ID=gene-NDY25_04495;Name=NDY25_04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04495 CP098604.1 Protein Homology CDS 1039637 1039900 . - 0 ID=cds-UUF03291.1;Parent=gene-NDY25_04495;Dbxref=NCBI_GP:UUF03291.1;Name=UUF03291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479855.1;locus_tag=NDY25_04495;product=hypothetical protein;protein_id=UUF03291.1;transl_table=11 CP098604.1 Genbank pseudogene 1040003 1041661 . + . ID=gene-NDY25_04500;Name=hsdR;gbkey=Gene;gene=hsdR;gene_biotype=pseudogene;locus_tag=NDY25_04500;pseudo=true CP098604.1 Protein Homology CDS 1040003 1041661 . + 0 ID=cds-NDY25_04500;Parent=gene-NDY25_04500;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;gene=hsdR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930478.1;locus_tag=NDY25_04500;product=type I restriction-modification system endonuclease;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1041748 1042950 . + . ID=gene-NDY25_04505;Name=NDY25_04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04505 CP098604.1 Protein Homology CDS 1041748 1042950 . + 0 ID=cds-UUF03292.1;Parent=gene-NDY25_04505;Dbxref=NCBI_GP:UUF03292.1;Name=UUF03292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376182.1;locus_tag=NDY25_04505;product=Fic family protein;protein_id=UUF03292.1;transl_table=11 CP098604.1 Genbank gene 1043046 1044190 . + . ID=gene-NDY25_04510;Name=NDY25_04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04510 CP098604.1 Protein Homology CDS 1043046 1043283 . + 0 ID=cds-UUF03293.1;Parent=gene-NDY25_04510;Dbxref=NCBI_GP:UUF03293.1;Name=UUF03293.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_04510;product=IS3 family transposase;protein_id=UUF03293.1;transl_table=11 CP098604.1 Protein Homology CDS 1043283 1044190 . + 2 ID=cds-UUF03293.1;Parent=gene-NDY25_04510;Dbxref=NCBI_GP:UUF03293.1;Name=UUF03293.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_04510;product=IS3 family transposase;protein_id=UUF03293.1;transl_table=11 CP098604.1 Genbank gene 1044187 1045722 . + . ID=gene-NDY25_04515;Name=NDY25_04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04515 CP098604.1 Protein Homology CDS 1044187 1045722 . + 0 ID=cds-UUF03294.1;Parent=gene-NDY25_04515;Dbxref=NCBI_GP:UUF03294.1;Name=UUF03294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502302.1;locus_tag=NDY25_04515;product=SAM-dependent methyltransferase;protein_id=UUF03294.1;transl_table=11 CP098604.1 Genbank gene 1045739 1046281 . + . ID=gene-NDY25_04520;Name=NDY25_04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04520 CP098604.1 Protein Homology CDS 1045739 1046281 . + 0 ID=cds-UUF03295.1;Parent=gene-NDY25_04520;Dbxref=NCBI_GP:UUF03295.1;Name=UUF03295.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013579.2;locus_tag=NDY25_04520;product=hypothetical protein;protein_id=UUF03295.1;transl_table=11 CP098604.1 Genbank gene 1046332 1047054 . + . ID=gene-NDY25_04525;Name=NDY25_04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04525 CP098604.1 Protein Homology CDS 1046332 1047054 . + 0 ID=cds-UUF03296.1;Parent=gene-NDY25_04525;Dbxref=NCBI_GP:UUF03296.1;Name=UUF03296.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: protein motif:HMM:NF013579.2;locus_tag=NDY25_04525;product=restriction endonuclease subunit S;protein_id=UUF03296.1;transl_table=11 CP098604.1 Genbank gene 1047096 1048898 . + . ID=gene-NDY25_04530;Name=NDY25_04530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04530 CP098604.1 Protein Homology CDS 1047096 1048898 . + 0 ID=cds-UUF03297.1;Parent=gene-NDY25_04530;Dbxref=NCBI_GP:UUF03297.1;Name=UUF03297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574150.1;locus_tag=NDY25_04530;product=DUF262 domain-containing protein;protein_id=UUF03297.1;transl_table=11 CP098604.1 Genbank pseudogene 1048964 1049258 . - . ID=gene-NDY25_04535;Name=NDY25_04535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04535;pseudo=true CP098604.1 Protein Homology CDS 1048964 1049258 . - 0 ID=cds-NDY25_04535;Parent=gene-NDY25_04535;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154815.1;locus_tag=NDY25_04535;product=MarR family transcriptional regulator;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 1049304 1049780 . - . ID=gene-NDY25_04540;Name=NDY25_04540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04540;pseudo=true CP098604.1 Protein Homology CDS 1049304 1049780 . - 0 ID=cds-NDY25_04540;Parent=gene-NDY25_04540;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089567.1;locus_tag=NDY25_04540;product=TetR/AcrR family transcriptional regulator;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 1049782 1050336 . + . ID=gene-NDY25_04545;Name=bdcA;gbkey=Gene;gene=bdcA;gene_biotype=pseudogene;locus_tag=NDY25_04545;pseudo=true CP098604.1 Protein Homology CDS 1049782 1050336 . + 0 ID=cds-NDY25_04545;Parent=gene-NDY25_04545;Note=incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0016491;gbkey=CDS;gene=bdcA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154930.1;locus_tag=NDY25_04545;product=SDR family oxidoreductase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1050383 1050679 . - . ID=gene-NDY25_04550;Name=NDY25_04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04550 CP098604.1 Protein Homology CDS 1050383 1050679 . - 0 ID=cds-UUF03298.1;Parent=gene-NDY25_04550;Dbxref=NCBI_GP:UUF03298.1;Name=UUF03298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017909631.1;locus_tag=NDY25_04550;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=UUF03298.1;transl_table=11 CP098604.1 Genbank gene 1050681 1050965 . - . ID=gene-NDY25_04555;Name=NDY25_04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04555 CP098604.1 Protein Homology CDS 1050681 1050965 . - 0 ID=cds-UUF03299.1;Parent=gene-NDY25_04555;Dbxref=NCBI_GP:UUF03299.1;Name=UUF03299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017909630.1;locus_tag=NDY25_04555;product=CopG family transcriptional regulator;protein_id=UUF03299.1;transl_table=11 CP098604.1 Genbank gene 1051296 1053959 . - . ID=gene-NDY25_04560;Name=NDY25_04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04560 CP098604.1 Protein Homology CDS 1051296 1053959 . - 0 ID=cds-UUF03300.1;Parent=gene-NDY25_04560;Dbxref=NCBI_GP:UUF03300.1;Name=UUF03300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439021.1;locus_tag=NDY25_04560;product=M1 family metallopeptidase;protein_id=UUF03300.1;transl_table=11 CP098604.1 Genbank gene 1054134 1055426 . - . ID=gene-NDY25_04565;Name=NDY25_04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04565 CP098604.1 Protein Homology CDS 1054134 1055426 . - 0 ID=cds-UUF03301.1;Parent=gene-NDY25_04565;Dbxref=NCBI_GP:UUF03301.1;Name=UUF03301.1;Ontology_term=GO:0006164,GO:0004019,GO:0005525;gbkey=CDS;go_function=adenylosuccinate synthase activity|0004019||IEA,GTP binding|0005525||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903917.1;locus_tag=NDY25_04565;product=adenylosuccinate synthase;protein_id=UUF03301.1;transl_table=11 CP098604.1 Genbank gene 1055854 1056054 . - . ID=gene-NDY25_04570;Name=NDY25_04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04570 CP098604.1 Protein Homology CDS 1055854 1056054 . - 0 ID=cds-UUF03302.1;Parent=gene-NDY25_04570;Dbxref=NCBI_GP:UUF03302.1;Name=UUF03302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155761.1;locus_tag=NDY25_04570;product=DUF2065 family protein;protein_id=UUF03302.1;transl_table=11 CP098604.1 Genbank gene 1056318 1057181 . - . ID=gene-NDY25_04575;Name=NDY25_04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04575 CP098604.1 Protein Homology CDS 1056318 1057181 . - 0 ID=cds-UUF03303.1;Parent=gene-NDY25_04575;Dbxref=NCBI_GP:UUF03303.1;Name=UUF03303.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449475.1;locus_tag=NDY25_04575;product=protease modulator HflC;protein_id=UUF03303.1;transl_table=11 CP098604.1 Genbank gene 1057178 1058320 . - . ID=gene-NDY25_04580;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=NDY25_04580 CP098604.1 Protein Homology CDS 1057178 1058320 . - 0 ID=cds-UUF03304.1;Parent=gene-NDY25_04580;Dbxref=NCBI_GP:UUF03304.1;Name=UUF03304.1;Ontology_term=GO:0045861,GO:0003674,GO:0030288;gbkey=CDS;gene=hflK;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=molecular_function|0003674||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019186090.1;locus_tag=NDY25_04580;product=FtsH protease activity modulator HflK;protein_id=UUF03304.1;transl_table=11 CP098604.1 Genbank gene 1058717 1059103 . - . ID=gene-NDY25_04585;Name=pilH;gbkey=Gene;gene=pilH;gene_biotype=protein_coding;locus_tag=NDY25_04585 CP098604.1 Protein Homology CDS 1058717 1059103 . - 0 ID=cds-UUF03305.1;Parent=gene-NDY25_04585;Dbxref=NCBI_GP:UUF03305.1;Name=UUF03305.1;gbkey=CDS;gene=pilH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036249.1;locus_tag=NDY25_04585;product=twitching motility response regulator PilH;protein_id=UUF03305.1;transl_table=11 CP098604.1 Genbank gene 1059527 1060423 . - . ID=gene-NDY25_04590;Name=NDY25_04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04590 CP098604.1 Protein Homology CDS 1059527 1060423 . - 0 ID=cds-UUF03306.1;Parent=gene-NDY25_04590;Dbxref=NCBI_GP:UUF03306.1;Name=UUF03306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113063.1;locus_tag=NDY25_04590;product=DnaJ domain-containing protein;protein_id=UUF03306.1;transl_table=11 CP098604.1 Genbank gene 1060564 1061040 . - . ID=gene-NDY25_04595;Name=NDY25_04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04595 CP098604.1 Protein Homology CDS 1060564 1061040 . - 0 ID=cds-UUF03307.1;Parent=gene-NDY25_04595;Dbxref=NCBI_GP:UUF03307.1;Name=UUF03307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155766.1;locus_tag=NDY25_04595;product=Hsp20/alpha crystallin family protein;protein_id=UUF03307.1;transl_table=11 CP098604.1 Genbank gene 1061200 1061682 . + . ID=gene-NDY25_04600;Name=NDY25_04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04600 CP098604.1 Protein Homology CDS 1061200 1061682 . + 0 ID=cds-UUF03308.1;Parent=gene-NDY25_04600;Dbxref=NCBI_GP:UUF03308.1;Name=UUF03308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155767.1;locus_tag=NDY25_04600;product=peroxiredoxin;protein_id=UUF03308.1;transl_table=11 CP098604.1 Genbank gene 1061725 1062285 . + . ID=gene-NDY25_04605;Name=NDY25_04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04605 CP098604.1 Protein Homology CDS 1061725 1062285 . + 0 ID=cds-UUF03309.1;Parent=gene-NDY25_04605;Dbxref=NCBI_GP:UUF03309.1;Name=UUF03309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996162.1;locus_tag=NDY25_04605;product=ferritin-like domain-containing protein;protein_id=UUF03309.1;transl_table=11 CP098604.1 Genbank gene 1062849 1065272 . - . ID=gene-NDY25_04610;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=NDY25_04610 CP098604.1 Protein Homology CDS 1062849 1065272 . - 0 ID=cds-UUF04529.1;Parent=gene-NDY25_04610;Dbxref=NCBI_GP:UUF04529.1;Name=UUF04529.1;Ontology_term=GO:0009252,GO:0003824,GO:0009274;gbkey=CDS;gene=pbpC;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849843.1;locus_tag=NDY25_04610;product=penicillin-binding protein 1C;protein_id=UUF04529.1;transl_table=11 CP098604.1 Genbank gene 1065377 1066153 . - . ID=gene-NDY25_04615;Name=NDY25_04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04615 CP098604.1 Protein Homology CDS 1065377 1066153 . - 0 ID=cds-UUF03310.1;Parent=gene-NDY25_04615;Dbxref=NCBI_GP:UUF03310.1;Name=UUF03310.1;Ontology_term=GO:0071586,GO:0004222,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=CAAX-box protein processing|0071586||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451902.1;locus_tag=NDY25_04615;product=CPBP family glutamic-type intramembrane protease;protein_id=UUF03310.1;transl_table=11 CP098604.1 Genbank gene 1066303 1067250 . - . ID=gene-NDY25_04620;Name=NDY25_04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04620 CP098604.1 Protein Homology CDS 1066303 1067250 . - 0 ID=cds-UUF03311.1;Parent=gene-NDY25_04620;Dbxref=NCBI_GP:UUF03311.1;Name=UUF03311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944837.1;locus_tag=NDY25_04620;product=glycerophosphodiester phosphodiesterase family protein;protein_id=UUF03311.1;transl_table=11 CP098604.1 Genbank gene 1067414 1070107 . - . ID=gene-NDY25_04625;Name=NDY25_04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04625 CP098604.1 Protein Homology CDS 1067414 1070107 . - 0 ID=cds-UUF04530.1;Parent=gene-NDY25_04625;Dbxref=NCBI_GP:UUF04530.1;Name=UUF04530.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451899.1;locus_tag=NDY25_04625;product=TonB-dependent receptor;protein_id=UUF04530.1;transl_table=11 CP098604.1 Genbank gene 1070316 1070513 . - . ID=gene-NDY25_04630;Name=NDY25_04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04630 CP098604.1 GeneMarkS-2+ CDS 1070316 1070513 . - 0 ID=cds-UUF03312.1;Parent=gene-NDY25_04630;Dbxref=NCBI_GP:UUF03312.1;Name=UUF03312.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04630;product=hypothetical protein;protein_id=UUF03312.1;transl_table=11 CP098604.1 Genbank gene 1070787 1071254 . - . ID=gene-NDY25_04635;Name=NDY25_04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04635 CP098604.1 Protein Homology CDS 1070787 1071254 . - 0 ID=cds-UUF04531.1;Parent=gene-NDY25_04635;Dbxref=NCBI_GP:UUF04531.1;Name=UUF04531.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913955.1;locus_tag=NDY25_04635;product=transposase;protein_id=UUF04531.1;transl_table=11 CP098604.1 Genbank gene 1071408 1076309 . - . ID=gene-NDY25_04640;Name=NDY25_04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04640 CP098604.1 Protein Homology CDS 1071408 1076309 . - 0 ID=cds-UUF03313.1;Parent=gene-NDY25_04640;Dbxref=NCBI_GP:UUF03313.1;Name=UUF03313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571584.1;locus_tag=NDY25_04640;product=alpha-2-macroglobulin family protein;protein_id=UUF03313.1;transl_table=11 CP098604.1 Genbank gene 1077210 1078181 . - . ID=gene-NDY25_04645;Name=NDY25_04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04645 CP098604.1 Protein Homology CDS 1077210 1078181 . - 0 ID=cds-UUF04532.1;Parent=gene-NDY25_04645;Dbxref=NCBI_GP:UUF04532.1;Name=UUF04532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089556.1;locus_tag=NDY25_04645;product=nucleoside hydrolase;protein_id=UUF04532.1;transl_table=11 CP098604.1 Genbank gene 1078288 1080504 . - . ID=gene-NDY25_04650;Name=NDY25_04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04650 CP098604.1 Protein Homology CDS 1078288 1080504 . - 0 ID=cds-UUF03314.1;Parent=gene-NDY25_04650;Dbxref=NCBI_GP:UUF03314.1;Name=UUF03314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305008.1;locus_tag=NDY25_04650;product=TonB-dependent receptor;protein_id=UUF03314.1;transl_table=11 CP098604.1 Genbank gene 1080826 1082025 . - . ID=gene-NDY25_04655;Name=prpF;gbkey=Gene;gene=prpF;gene_biotype=protein_coding;locus_tag=NDY25_04655 CP098604.1 Protein Homology CDS 1080826 1082025 . - 0 ID=cds-UUF03315.1;Parent=gene-NDY25_04655;Dbxref=NCBI_GP:UUF03315.1;Name=UUF03315.1;Ontology_term=GO:0019629;gbkey=CDS;gene=prpF;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379007.1;locus_tag=NDY25_04655;product=2-methylaconitate cis-trans isomerase PrpF;protein_id=UUF03315.1;transl_table=11 CP098604.1 Genbank gene 1082090 1084732 . - . ID=gene-NDY25_04660;Name=acnD;gbkey=Gene;gene=acnD;gene_biotype=protein_coding;locus_tag=NDY25_04660 CP098604.1 Protein Homology CDS 1082090 1084732 . - 0 ID=cds-UUF03316.1;Parent=gene-NDY25_04660;Dbxref=NCBI_GP:UUF03316.1;Name=UUF03316.1;Ontology_term=GO:0019629,GO:0047456;gbkey=CDS;gene=acnD;go_function=2-methylisocitrate dehydratase activity|0047456||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814297.1;locus_tag=NDY25_04660;product=Fe/S-dependent 2-methylisocitrate dehydratase AcnD;protein_id=UUF03316.1;transl_table=11 CP098604.1 Genbank gene 1084940 1086094 . - . ID=gene-NDY25_04665;Name=prpC;gbkey=Gene;gene=prpC;gene_biotype=protein_coding;locus_tag=NDY25_04665 CP098604.1 Protein Homology CDS 1084940 1086094 . - 0 ID=cds-UUF03317.1;Parent=gene-NDY25_04665;Dbxref=NCBI_GP:UUF03317.1;Name=UUF03317.1;Ontology_term=GO:0050440;gbkey=CDS;gene=prpC;go_function=2-methylcitrate synthase activity|0050440||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448400.1;locus_tag=NDY25_04665;product=2-methylcitrate synthase;protein_id=UUF03317.1;transl_table=11 CP098604.1 Genbank gene 1086170 1087018 . - . ID=gene-NDY25_04670;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=NDY25_04670 CP098604.1 Protein Homology CDS 1086170 1087018 . - 0 ID=cds-UUF04533.1;Parent=gene-NDY25_04670;Dbxref=NCBI_GP:UUF04533.1;Name=UUF04533.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017916027.1;locus_tag=NDY25_04670;product=methylisocitrate lyase;protein_id=UUF04533.1;transl_table=11 CP098604.1 Genbank gene 1087193 1088812 . + . ID=gene-NDY25_04675;Name=prpR;gbkey=Gene;gene=prpR;gene_biotype=protein_coding;locus_tag=NDY25_04675 CP098604.1 Protein Homology CDS 1087193 1088812 . + 0 ID=cds-UUF03318.1;Parent=gene-NDY25_04675;Dbxref=NCBI_GP:UUF03318.1;Name=UUF03318.1;gbkey=CDS;gene=prpR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849832.1;locus_tag=NDY25_04675;product=propionate catabolism operon regulatory protein PrpR;protein_id=UUF03318.1;transl_table=11 CP098604.1 Genbank gene 1089055 1089381 . - . ID=gene-NDY25_04680;Name=NDY25_04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04680 CP098604.1 Protein Homology CDS 1089055 1089381 . - 0 ID=cds-UUF03319.1;Parent=gene-NDY25_04680;Dbxref=NCBI_GP:UUF03319.1;Name=UUF03319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089549.1;locus_tag=NDY25_04680;product=hypothetical protein;protein_id=UUF03319.1;transl_table=11 CP098604.1 Genbank gene 1089567 1089818 . + . ID=gene-NDY25_04685;Name=NDY25_04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04685 CP098604.1 Protein Homology CDS 1089567 1089818 . + 0 ID=cds-UUF03320.1;Parent=gene-NDY25_04685;Dbxref=NCBI_GP:UUF03320.1;Name=UUF03320.1;Ontology_term=GO:0008219;gbkey=CDS;go_process=cell death|0008219||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368416.1;locus_tag=NDY25_04685;product=type II toxin-antitoxin system prevent-host-death family antitoxin;protein_id=UUF03320.1;transl_table=11 CP098604.1 Genbank gene 1089815 1090072 . + . ID=gene-NDY25_04690;Name=NDY25_04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04690 CP098604.1 Protein Homology CDS 1089815 1090072 . + 0 ID=cds-UUF03321.1;Parent=gene-NDY25_04690;Dbxref=NCBI_GP:UUF03321.1;Name=UUF03321.1;Ontology_term=GO:0008219;gbkey=CDS;go_process=cell death|0008219||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118010.1;locus_tag=NDY25_04690;product=Txe/YoeB family addiction module toxin;protein_id=UUF03321.1;transl_table=11 CP098604.1 Genbank gene 1090269 1090343 . - . ID=gene-NDY25_04695;Name=NDY25_04695;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_04695 CP098604.1 tRNAscan-SE tRNA 1090269 1090343 . - . ID=rna-NDY25_04695;Parent=gene-NDY25_04695;anticodon=(pos:complement(1090309..1090311));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04695;product=tRNA-Val CP098604.1 tRNAscan-SE exon 1090269 1090343 . - . ID=exon-NDY25_04695-1;Parent=rna-NDY25_04695;anticodon=(pos:complement(1090309..1090311));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04695;product=tRNA-Val CP098604.1 Genbank gene 1090579 1090932 . - . ID=gene-NDY25_04700;Name=NDY25_04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04700 CP098604.1 Protein Homology CDS 1090579 1090932 . - 0 ID=cds-UUF03322.1;Parent=gene-NDY25_04700;Dbxref=NCBI_GP:UUF03322.1;Name=UUF03322.1;Ontology_term=GO:0035438;gbkey=CDS;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155784.1;locus_tag=NDY25_04700;product=PilZ domain-containing protein;protein_id=UUF03322.1;transl_table=11 CP098604.1 Genbank gene 1090929 1091888 . - . ID=gene-NDY25_04705;Name=NDY25_04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04705 CP098604.1 Protein Homology CDS 1090929 1091888 . - 0 ID=cds-UUF03323.1;Parent=gene-NDY25_04705;Dbxref=NCBI_GP:UUF03323.1;Name=UUF03323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969013.1;locus_tag=NDY25_04705;product=DNA polymerase III subunit delta';protein_id=UUF03323.1;transl_table=11 CP098604.1 Genbank gene 1091885 1092946 . - . ID=gene-NDY25_04710;Name=mltG;gbkey=Gene;gene=mltG;gene_biotype=protein_coding;locus_tag=NDY25_04710 CP098604.1 Protein Homology CDS 1091885 1092946 . - 0 ID=cds-UUF03324.1;Parent=gene-NDY25_04710;Dbxref=NCBI_GP:UUF03324.1;Name=UUF03324.1;Ontology_term=GO:0009252,GO:0071555,GO:0008932;gbkey=CDS;gene=mltG;go_function=lytic endotransglycosylase activity|0008932||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995238.1;locus_tag=NDY25_04710;product=endolytic transglycosylase MltG;protein_id=UUF03324.1;transl_table=11 CP098604.1 Genbank gene 1093019 1094374 . - . ID=gene-NDY25_04715;Name=NDY25_04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04715 CP098604.1 Protein Homology CDS 1093019 1094374 . - 0 ID=cds-UUF03325.1;Parent=gene-NDY25_04715;Dbxref=NCBI_GP:UUF03325.1;Name=UUF03325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160233.1;locus_tag=NDY25_04715;product=aminodeoxychorismate synthase component I;protein_id=UUF03325.1;transl_table=11 CP098604.1 Genbank gene 1094545 1095780 . - . ID=gene-NDY25_04720;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=NDY25_04720 CP098604.1 Protein Homology CDS 1094545 1095780 . - 0 ID=cds-UUF03326.1;Parent=gene-NDY25_04720;Dbxref=NCBI_GP:UUF03326.1;Name=UUF03326.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302031.1;locus_tag=NDY25_04720;product=beta-ketoacyl-ACP synthase II;protein_id=UUF03326.1;transl_table=11 CP098604.1 Genbank gene 1095921 1096160 . - . ID=gene-NDY25_04725;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=NDY25_04725 CP098604.1 Protein Homology CDS 1095921 1096160 . - 0 ID=cds-UUF03327.1;Parent=gene-NDY25_04725;Dbxref=NCBI_GP:UUF03327.1;Name=UUF03327.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013535667.1;locus_tag=NDY25_04725;product=acyl carrier protein;protein_id=UUF03327.1;transl_table=11 CP098604.1 Genbank gene 1096317 1097060 . - . ID=gene-NDY25_04730;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=NDY25_04730 CP098604.1 Protein Homology CDS 1096317 1097060 . - 0 ID=cds-UUF03328.1;Parent=gene-NDY25_04730;Dbxref=NCBI_GP:UUF03328.1;Name=UUF03328.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814323.1;locus_tag=NDY25_04730;product=3-oxoacyl-ACP reductase FabG;protein_id=UUF03328.1;transl_table=11 CP098604.1 Genbank gene 1097148 1098092 . - . ID=gene-NDY25_04735;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=NDY25_04735 CP098604.1 Protein Homology CDS 1097148 1098092 . - 0 ID=cds-UUF03329.1;Parent=gene-NDY25_04735;Dbxref=NCBI_GP:UUF03329.1;Name=UUF03329.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304127.1;locus_tag=NDY25_04735;product=ACP S-malonyltransferase;protein_id=UUF03329.1;transl_table=11 CP098604.1 Genbank gene 1098197 1098979 . - . ID=gene-NDY25_04740;Name=NDY25_04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04740 CP098604.1 Protein Homology CDS 1098197 1098979 . - 0 ID=cds-UUF03330.1;Parent=gene-NDY25_04740;Dbxref=NCBI_GP:UUF03330.1;Name=UUF03330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902517.1;locus_tag=NDY25_04740;product=serine/threonine protein phosphatase;protein_id=UUF03330.1;transl_table=11 CP098604.1 Genbank gene 1099041 1100018 . - . ID=gene-NDY25_04745;Name=NDY25_04745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04745 CP098604.1 Protein Homology CDS 1099041 1100018 . - 0 ID=cds-UUF03331.1;Parent=gene-NDY25_04745;Dbxref=NCBI_GP:UUF03331.1;Name=UUF03331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502254.1;locus_tag=NDY25_04745;product=ketoacyl-ACP synthase III;protein_id=UUF03331.1;transl_table=11 CP098604.1 Genbank gene 1100107 1100301 . - . ID=gene-NDY25_04750;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=NDY25_04750 CP098604.1 Protein Homology CDS 1100107 1100301 . - 0 ID=cds-UUF03332.1;Parent=gene-NDY25_04750;Dbxref=NCBI_GP:UUF03332.1;Name=UUF03332.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmF;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302036.1;locus_tag=NDY25_04750;product=50S ribosomal protein L32;protein_id=UUF03332.1;transl_table=11 CP098604.1 Genbank gene 1100399 1100908 . - . ID=gene-NDY25_04755;Name=NDY25_04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04755 CP098604.1 Protein Homology CDS 1100399 1100908 . - 0 ID=cds-UUF04534.1;Parent=gene-NDY25_04755;Dbxref=NCBI_GP:UUF04534.1;Name=UUF04534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814328.1;locus_tag=NDY25_04755;product=YceD family protein;protein_id=UUF04534.1;transl_table=11 CP098604.1 Genbank gene 1101017 1101592 . + . ID=gene-NDY25_04760;Name=NDY25_04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04760 CP098604.1 Protein Homology CDS 1101017 1101592 . + 0 ID=cds-UUF03333.1;Parent=gene-NDY25_04760;Dbxref=NCBI_GP:UUF03333.1;Name=UUF03333.1;Ontology_term=GO:0000917,GO:0030428;gbkey=CDS;go_component=cell septum|0030428||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159643.1;locus_tag=NDY25_04760;product=Maf family nucleotide pyrophosphatase;protein_id=UUF03333.1;transl_table=11 CP098604.1 Genbank gene 1101695 1103410 . - . ID=gene-NDY25_04765;Name=NDY25_04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04765 CP098604.1 Protein Homology CDS 1101695 1103410 . - 0 ID=cds-UUF03334.1;Parent=gene-NDY25_04765;Dbxref=NCBI_GP:UUF03334.1;Name=UUF03334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448419.1;locus_tag=NDY25_04765;product=hypothetical protein;protein_id=UUF03334.1;transl_table=11 CP098604.1 Genbank gene 1103519 1105369 . - . ID=gene-NDY25_04770;Name=NDY25_04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04770 CP098604.1 Protein Homology CDS 1103519 1105369 . - 0 ID=cds-UUF03335.1;Parent=gene-NDY25_04770;Dbxref=NCBI_GP:UUF03335.1;Name=UUF03335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448420.1;locus_tag=NDY25_04770;product=glycosyltransferase family 39 protein;protein_id=UUF03335.1;transl_table=11 CP098604.1 Genbank gene 1105406 1106359 . + . ID=gene-NDY25_04775;Name=NDY25_04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04775 CP098604.1 Protein Homology CDS 1105406 1106359 . + 0 ID=cds-UUF03336.1;Parent=gene-NDY25_04775;Dbxref=NCBI_GP:UUF03336.1;Name=UUF03336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502249.1;locus_tag=NDY25_04775;product=AAA family ATPase;protein_id=UUF03336.1;transl_table=11 CP098604.1 Genbank gene 1106365 1107321 . + . ID=gene-NDY25_04780;Name=NDY25_04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04780 CP098604.1 Protein Homology CDS 1106365 1107321 . + 0 ID=cds-UUF03337.1;Parent=gene-NDY25_04780;Dbxref=NCBI_GP:UUF03337.1;Name=UUF03337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850007.1;locus_tag=NDY25_04780;product=DUF58 domain-containing protein;protein_id=UUF03337.1;transl_table=11 CP098604.1 Genbank pseudogene 1107314 1109263 . + . ID=gene-NDY25_04785;Name=NDY25_04785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04785;pseudo=true CP098604.1 Protein Homology CDS 1107314 1109263 . + 0 ID=cds-NDY25_04785;Parent=gene-NDY25_04785;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346625.1;locus_tag=NDY25_04785;product=DUF3488 and transglutaminase-like domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1109287 1109799 . + . ID=gene-NDY25_04790;Name=NDY25_04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04790 CP098604.1 Protein Homology CDS 1109287 1109799 . + 0 ID=cds-UUF04535.1;Parent=gene-NDY25_04790;Dbxref=NCBI_GP:UUF04535.1;Name=UUF04535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017355152.1;locus_tag=NDY25_04790;product=Slp family lipoprotein;protein_id=UUF04535.1;transl_table=11 CP098604.1 Genbank gene 1109923 1110273 . - . ID=gene-NDY25_04795;Name=NDY25_04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04795 CP098604.1 Protein Homology CDS 1109923 1110273 . - 0 ID=cds-UUF03338.1;Parent=gene-NDY25_04795;Dbxref=NCBI_GP:UUF03338.1;Name=UUF03338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155799.1;locus_tag=NDY25_04795;product=histidine triad nucleotide-binding protein;protein_id=UUF03338.1;transl_table=11 CP098604.1 Genbank gene 1110379 1110972 . - . ID=gene-NDY25_04800;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=NDY25_04800 CP098604.1 Protein Homology CDS 1110379 1110972 . - 0 ID=cds-UUF03339.1;Parent=gene-NDY25_04800;Dbxref=NCBI_GP:UUF03339.1;Name=UUF03339.1;Ontology_term=GO:0006281,GO:0006310;gbkey=CDS;gene=recR;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483843.1;locus_tag=NDY25_04800;product=recombination mediator RecR;protein_id=UUF03339.1;transl_table=11 CP098604.1 Genbank gene 1111069 1111389 . - . ID=gene-NDY25_04805;Name=NDY25_04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04805 CP098604.1 Protein Homology CDS 1111069 1111389 . - 0 ID=cds-UUF03340.1;Parent=gene-NDY25_04805;Dbxref=NCBI_GP:UUF03340.1;Name=UUF03340.1;Ontology_term=GO:0008150,GO:0003677,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346622.1;locus_tag=NDY25_04805;product=YbaB/EbfC family nucleoid-associated protein;protein_id=UUF03340.1;transl_table=11 CP098604.1 Genbank gene 1111396 1113456 . - . ID=gene-NDY25_04810;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=NDY25_04810 CP098604.1 Protein Homology CDS 1111396 1113456 . - 0 ID=cds-UUF03341.1;Parent=gene-NDY25_04810;Dbxref=NCBI_GP:UUF03341.1;Name=UUF03341.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155800.1;locus_tag=NDY25_04810;product=DNA polymerase III subunit gamma/tau;protein_id=UUF03341.1;transl_table=11 CP098604.1 Genbank gene 1113690 1113782 . + . ID=gene-NDY25_04815;Name=NDY25_04815;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_04815 CP098604.1 tRNAscan-SE tRNA 1113690 1113782 . + . ID=rna-NDY25_04815;Parent=gene-NDY25_04815;anticodon=(pos:1113724..1113726);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04815;product=tRNA-Ser CP098604.1 tRNAscan-SE exon 1113690 1113782 . + . ID=exon-NDY25_04815-1;Parent=rna-NDY25_04815;anticodon=(pos:1113724..1113726);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04815;product=tRNA-Ser CP098604.1 Genbank gene 1113869 1115350 . + . ID=gene-NDY25_04820;Name=NDY25_04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04820 CP098604.1 Protein Homology CDS 1113869 1115350 . + 0 ID=cds-UUF03342.1;Parent=gene-NDY25_04820;Dbxref=NCBI_GP:UUF03342.1;Name=UUF03342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346620.1;locus_tag=NDY25_04820;product=site-specific integrase;protein_id=UUF03342.1;transl_table=11 CP098604.1 Genbank gene 1116053 1116535 . - . ID=gene-NDY25_04825;Name=NDY25_04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04825 CP098604.1 GeneMarkS-2+ CDS 1116053 1116535 . - 0 ID=cds-UUF03343.1;Parent=gene-NDY25_04825;Dbxref=NCBI_GP:UUF03343.1;Name=UUF03343.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04825;product=hypothetical protein;protein_id=UUF03343.1;transl_table=11 CP098604.1 Genbank gene 1116912 1117064 . - . ID=gene-NDY25_04830;Name=NDY25_04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04830 CP098604.1 GeneMarkS-2+ CDS 1116912 1117064 . - 0 ID=cds-UUF03344.1;Parent=gene-NDY25_04830;Dbxref=NCBI_GP:UUF03344.1;Name=UUF03344.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04830;product=hypothetical protein;protein_id=UUF03344.1;transl_table=11 CP098604.1 Genbank gene 1117088 1119661 . - . ID=gene-NDY25_04835;Name=NDY25_04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04835 CP098604.1 Protein Homology CDS 1117088 1119661 . - 0 ID=cds-UUF04536.1;Parent=gene-NDY25_04835;Dbxref=NCBI_GP:UUF04536.1;Name=UUF04536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444433.1;locus_tag=NDY25_04835;product=type IV secretion protein Rhs;protein_id=UUF04536.1;transl_table=11 CP098604.1 Genbank gene 1119895 1121002 . - . ID=gene-NDY25_04840;Name=NDY25_04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04840 CP098604.1 Protein Homology CDS 1120746 1121002 . - 0 ID=cds-UUF03345.1;Parent=gene-NDY25_04840;Dbxref=NCBI_GP:UUF03345.1;Name=UUF03345.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_04840;product=IS3 family transposase;protein_id=UUF03345.1;transl_table=11 CP098604.1 Protein Homology CDS 1119895 1120747 . - 1 ID=cds-UUF03345.1;Parent=gene-NDY25_04840;Dbxref=NCBI_GP:UUF03345.1;Name=UUF03345.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_04840;product=IS3 family transposase;protein_id=UUF03345.1;transl_table=11 CP098604.1 Genbank pseudogene 1121124 1121411 . + . ID=gene-NDY25_04845;Name=NDY25_04845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04845;pseudo=true CP098604.1 Protein Homology CDS 1121124 1121411 . + 0 ID=cds-NDY25_04845;Parent=gene-NDY25_04845;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024676.2;locus_tag=NDY25_04845;product=WYL domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1121851 1122189 . - . ID=gene-NDY25_04850;Name=NDY25_04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04850 CP098604.1 Protein Homology CDS 1121851 1122189 . - 0 ID=cds-UUF03346.1;Parent=gene-NDY25_04850;Dbxref=NCBI_GP:UUF03346.1;Name=UUF03346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346599.1;locus_tag=NDY25_04850;product=helix-turn-helix domain-containing protein;protein_id=UUF03346.1;transl_table=11 CP098604.1 Genbank pseudogene 1122301 1123061 . + . ID=gene-NDY25_04855;Name=NDY25_04855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04855;pseudo=true CP098604.1 Protein Homology CDS 1122301 1123061 . + 0 ID=cds-NDY25_04855;Parent=gene-NDY25_04855;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363214.1;locus_tag=NDY25_04855;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1123107 1123418 . + . ID=gene-NDY25_04860;Name=NDY25_04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04860 CP098604.1 Protein Homology CDS 1123107 1123418 . + 0 ID=cds-UUF03347.1;Parent=gene-NDY25_04860;Dbxref=NCBI_GP:UUF03347.1;Name=UUF03347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438629.1;locus_tag=NDY25_04860;product=hypothetical protein;protein_id=UUF03347.1;transl_table=11 CP098604.1 Genbank pseudogene 1123415 1123794 . + . ID=gene-NDY25_04865;Name=NDY25_04865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04865;pseudo=true CP098604.1 Protein Homology CDS 1123415 1123794 . + 0 ID=cds-NDY25_04865;Parent=gene-NDY25_04865;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154975.1;locus_tag=NDY25_04865;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1123971 1124867 . + . ID=gene-NDY25_04870;Name=NDY25_04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04870 CP098604.1 Protein Homology CDS 1123971 1124867 . + 0 ID=cds-UUF03348.1;Parent=gene-NDY25_04870;Dbxref=NCBI_GP:UUF03348.1;Name=UUF03348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167401.1;locus_tag=NDY25_04870;product=hypothetical protein;protein_id=UUF03348.1;transl_table=11 CP098604.1 Genbank gene 1124892 1125620 . + . ID=gene-NDY25_04875;Name=NDY25_04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04875 CP098604.1 GeneMarkS-2+ CDS 1124892 1125620 . + 0 ID=cds-UUF03349.1;Parent=gene-NDY25_04875;Dbxref=NCBI_GP:UUF03349.1;Name=UUF03349.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04875;product=hypothetical protein;protein_id=UUF03349.1;transl_table=11 CP098604.1 Genbank gene 1125912 1126409 . + . ID=gene-NDY25_04880;Name=NDY25_04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04880 CP098604.1 GeneMarkS-2+ CDS 1125912 1126409 . + 0 ID=cds-UUF03350.1;Parent=gene-NDY25_04880;Dbxref=NCBI_GP:UUF03350.1;Name=UUF03350.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04880;product=hypothetical protein;protein_id=UUF03350.1;transl_table=11 CP098604.1 Genbank gene 1126430 1127065 . + . ID=gene-NDY25_04885;Name=NDY25_04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04885 CP098604.1 Protein Homology CDS 1126430 1127065 . + 0 ID=cds-UUF03351.1;Parent=gene-NDY25_04885;Dbxref=NCBI_GP:UUF03351.1;Name=UUF03351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155024.1;locus_tag=NDY25_04885;product=hypothetical protein;protein_id=UUF03351.1;transl_table=11 CP098604.1 Genbank gene 1127302 1127898 . - . ID=gene-NDY25_04890;Name=NDY25_04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04890 CP098604.1 Protein Homology CDS 1127302 1127898 . - 0 ID=cds-UUF03352.1;Parent=gene-NDY25_04890;Dbxref=NCBI_GP:UUF03352.1;Name=UUF03352.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020387.2;locus_tag=NDY25_04890;product=RES domain-containing protein;protein_id=UUF03352.1;transl_table=11 CP098604.1 Genbank gene 1128359 1128736 . - . ID=gene-NDY25_04895;Name=NDY25_04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04895 CP098604.1 GeneMarkS-2+ CDS 1128359 1128736 . - 0 ID=cds-UUF03353.1;Parent=gene-NDY25_04895;Dbxref=NCBI_GP:UUF03353.1;Name=UUF03353.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_04895;product=hypothetical protein;protein_id=UUF03353.1;transl_table=11 CP098604.1 Genbank pseudogene 1128893 1129299 . - . ID=gene-NDY25_04900;Name=NDY25_04900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_04900;pseudo=true CP098604.1 Protein Homology CDS 1128893 1129299 . - 0 ID=cds-NDY25_04900;Parent=gene-NDY25_04900;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371012.1;locus_tag=NDY25_04900;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1129679 1129775 . + . ID=gene-NDY25_04905;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=NDY25_04905 CP098604.1 cmsearch SRP_RNA 1129679 1129775 . + . ID=rna-NDY25_04905;Parent=gene-NDY25_04905;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_04905;product=signal recognition particle sRNA small type CP098604.1 cmsearch exon 1129679 1129775 . + . ID=exon-NDY25_04905-1;Parent=rna-NDY25_04905;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_04905;product=signal recognition particle sRNA small type CP098604.1 Genbank gene 1129851 1130300 . - . ID=gene-NDY25_04910;Name=NDY25_04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04910 CP098604.1 Protein Homology CDS 1129851 1130300 . - 0 ID=cds-UUF03354.1;Parent=gene-NDY25_04910;Dbxref=NCBI_GP:UUF03354.1;Name=UUF03354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502242.1;locus_tag=NDY25_04910;product=molybdenum cofactor biosynthesis protein MoaE;protein_id=UUF03354.1;transl_table=11 CP098604.1 Genbank gene 1130297 1130542 . - . ID=gene-NDY25_04915;Name=NDY25_04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04915 CP098604.1 Protein Homology CDS 1130297 1130542 . - 0 ID=cds-UUF03355.1;Parent=gene-NDY25_04915;Dbxref=NCBI_GP:UUF03355.1;Name=UUF03355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257909.1;locus_tag=NDY25_04915;product=MoaD/ThiS family protein;protein_id=UUF03355.1;transl_table=11 CP098604.1 Genbank gene 1130539 1131036 . - . ID=gene-NDY25_04920;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=NDY25_04920 CP098604.1 Protein Homology CDS 1130539 1131036 . - 0 ID=cds-UUF03356.1;Parent=gene-NDY25_04920;Dbxref=NCBI_GP:UUF03356.1;Name=UUF03356.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaC;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159642.1;locus_tag=NDY25_04920;product=cyclic pyranopterin monophosphate synthase MoaC;protein_id=UUF03356.1;transl_table=11 CP098604.1 Genbank gene 1131113 1132147 . - . ID=gene-NDY25_04925;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=NDY25_04925 CP098604.1 Protein Homology CDS 1131113 1132147 . - 0 ID=cds-UUF03357.1;Parent=gene-NDY25_04925;Dbxref=NCBI_GP:UUF03357.1;Name=UUF03357.1;Ontology_term=GO:0006777,GO:0051539;gbkey=CDS;gene=moaA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814367.1;locus_tag=NDY25_04925;product=GTP 3'%2C8-cyclase MoaA;protein_id=UUF03357.1;transl_table=11 CP098604.1 Genbank gene 1132147 1132896 . - . ID=gene-NDY25_04930;Name=NDY25_04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04930 CP098604.1 Protein Homology CDS 1132147 1132896 . - 0 ID=cds-UUF03358.1;Parent=gene-NDY25_04930;Dbxref=NCBI_GP:UUF03358.1;Name=UUF03358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158132.1;locus_tag=NDY25_04930;product=MBL fold metallo-hydrolase;protein_id=UUF03358.1;transl_table=11 CP098604.1 Genbank gene 1132896 1133645 . - . ID=gene-NDY25_04935;Name=NDY25_04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04935 CP098604.1 Protein Homology CDS 1132896 1133645 . - 0 ID=cds-UUF03359.1;Parent=gene-NDY25_04935;Dbxref=NCBI_GP:UUF03359.1;Name=UUF03359.1;Ontology_term=GO:0016773;gbkey=CDS;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305198.1;locus_tag=NDY25_04935;product=3-deoxy-D-manno-octulosonic acid kinase;protein_id=UUF03359.1;transl_table=11 CP098604.1 Genbank gene 1133666 1134715 . + . ID=gene-NDY25_04940;Name=NDY25_04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04940 CP098604.1 Protein Homology CDS 1133666 1134715 . + 0 ID=cds-UUF03360.1;Parent=gene-NDY25_04940;Dbxref=NCBI_GP:UUF03360.1;Name=UUF03360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050699.1;locus_tag=NDY25_04940;product=glycosyltransferase family 9 protein;protein_id=UUF03360.1;transl_table=11 CP098604.1 Genbank gene 1134821 1135225 . - . ID=gene-NDY25_04945;Name=NDY25_04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04945 CP098604.1 Protein Homology CDS 1134821 1135225 . - 0 ID=cds-UUF03361.1;Parent=gene-NDY25_04945;Dbxref=NCBI_GP:UUF03361.1;Name=UUF03361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158129.1;locus_tag=NDY25_04945;product=DUF6165 family protein;protein_id=UUF03361.1;transl_table=11 CP098604.1 Genbank gene 1135325 1135413 . - . ID=gene-NDY25_04950;Name=NDY25_04950;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_04950 CP098604.1 tRNAscan-SE tRNA 1135325 1135413 . - . ID=rna-NDY25_04950;Parent=gene-NDY25_04950;anticodon=(pos:complement(1135377..1135379));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04950;product=tRNA-Ser CP098604.1 tRNAscan-SE exon 1135325 1135413 . - . ID=exon-NDY25_04950-1;Parent=rna-NDY25_04950;anticodon=(pos:complement(1135377..1135379));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04950;product=tRNA-Ser CP098604.1 Genbank gene 1135611 1136315 . + . ID=gene-NDY25_04955;Name=NDY25_04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04955 CP098604.1 Protein Homology CDS 1135611 1136315 . + 0 ID=cds-UUF03362.1;Parent=gene-NDY25_04955;Dbxref=NCBI_GP:UUF03362.1;Name=UUF03362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483822.1;locus_tag=NDY25_04955;product=protein phosphatase 2C domain-containing protein;protein_id=UUF03362.1;transl_table=11 CP098604.1 Genbank gene 1136312 1137046 . - . ID=gene-NDY25_04960;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=NDY25_04960 CP098604.1 Protein Homology CDS 1136312 1137046 . - 0 ID=cds-UUF03363.1;Parent=gene-NDY25_04960;Dbxref=NCBI_GP:UUF03363.1;Name=UUF03363.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158127.1;locus_tag=NDY25_04960;product=DNA polymerase III subunit epsilon;protein_id=UUF03363.1;transl_table=11 CP098604.1 Genbank gene 1137059 1137511 . - . ID=gene-NDY25_04965;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=NDY25_04965 CP098604.1 Protein Homology CDS 1137059 1137511 . - 0 ID=cds-UUF03364.1;Parent=gene-NDY25_04965;Dbxref=NCBI_GP:UUF03364.1;Name=UUF03364.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450176.1;locus_tag=NDY25_04965;product=ribonuclease HI;protein_id=UUF03364.1;transl_table=11 CP098604.1 Genbank gene 1137543 1138199 . - . ID=gene-NDY25_04970;Name=NDY25_04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04970 CP098604.1 Protein Homology CDS 1137543 1138199 . - 0 ID=cds-UUF03365.1;Parent=gene-NDY25_04970;Dbxref=NCBI_GP:UUF03365.1;Name=UUF03365.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346590.1;locus_tag=NDY25_04970;product=hypothetical protein;protein_id=UUF03365.1;transl_table=11 CP098604.1 Genbank gene 1138212 1138979 . + . ID=gene-NDY25_04975;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=NDY25_04975 CP098604.1 Protein Homology CDS 1138212 1138979 . + 0 ID=cds-UUF03366.1;Parent=gene-NDY25_04975;Dbxref=NCBI_GP:UUF03366.1;Name=UUF03366.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902543.1;locus_tag=NDY25_04975;product=hydroxyacylglutathione hydrolase;protein_id=UUF03366.1;transl_table=11 CP098604.1 Genbank gene 1138976 1140154 . + . ID=gene-NDY25_04980;Name=NDY25_04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04980 CP098604.1 Protein Homology CDS 1138976 1140154 . + 0 ID=cds-UUF03367.1;Parent=gene-NDY25_04980;Dbxref=NCBI_GP:UUF03367.1;Name=UUF03367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112895.1;locus_tag=NDY25_04980;product=transglycosylase SLT domain-containing protein;protein_id=UUF03367.1;transl_table=11 CP098604.1 Genbank gene 1140601 1142571 . - . ID=gene-NDY25_04985;Name=NDY25_04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_04985 CP098604.1 Protein Homology CDS 1140601 1142571 . - 0 ID=cds-UUF03368.1;Parent=gene-NDY25_04985;Dbxref=NCBI_GP:UUF03368.1;Name=UUF03368.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920425.1;locus_tag=NDY25_04985;product=peptidyl-prolyl cis-trans isomerase;protein_id=UUF03368.1;transl_table=11 CP098604.1 Genbank gene 1142737 1142813 . - . ID=gene-NDY25_04990;Name=NDY25_04990;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_04990 CP098604.1 tRNAscan-SE tRNA 1142737 1142813 . - . ID=rna-NDY25_04990;Parent=gene-NDY25_04990;anticodon=(pos:complement(1142777..1142779));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04990;product=tRNA-Asp CP098604.1 tRNAscan-SE exon 1142737 1142813 . - . ID=exon-NDY25_04990-1;Parent=rna-NDY25_04990;anticodon=(pos:complement(1142777..1142779));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04990;product=tRNA-Asp CP098604.1 Genbank gene 1142908 1142984 . - . ID=gene-NDY25_04995;Name=NDY25_04995;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_04995 CP098604.1 tRNAscan-SE tRNA 1142908 1142984 . - . ID=rna-NDY25_04995;Parent=gene-NDY25_04995;anticodon=(pos:complement(1142948..1142950));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04995;product=tRNA-Asp CP098604.1 tRNAscan-SE exon 1142908 1142984 . - . ID=exon-NDY25_04995-1;Parent=rna-NDY25_04995;anticodon=(pos:complement(1142948..1142950));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_04995;product=tRNA-Asp CP098604.1 Genbank gene 1143013 1143087 . - . ID=gene-NDY25_05000;Name=NDY25_05000;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05000 CP098604.1 tRNAscan-SE tRNA 1143013 1143087 . - . ID=rna-NDY25_05000;Parent=gene-NDY25_05000;anticodon=(pos:complement(1143053..1143055));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05000;product=tRNA-Val CP098604.1 tRNAscan-SE exon 1143013 1143087 . - . ID=exon-NDY25_05000-1;Parent=rna-NDY25_05000;anticodon=(pos:complement(1143053..1143055));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05000;product=tRNA-Val CP098604.1 Genbank gene 1143099 1143371 . - . ID=gene-NDY25_05005;Name=NDY25_05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05005 CP098604.1 Protein Homology CDS 1143099 1143371 . - 0 ID=cds-UUF03369.1;Parent=gene-NDY25_05005;Dbxref=NCBI_GP:UUF03369.1;Name=UUF03369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904732.1;locus_tag=NDY25_05005;product=HU family DNA-binding protein;protein_id=UUF03369.1;transl_table=11 CP098604.1 Genbank gene 1143586 1146057 . - . ID=gene-NDY25_05010;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=NDY25_05010 CP098604.1 Protein Homology CDS 1143586 1146057 . - 0 ID=cds-UUF03370.1;Parent=gene-NDY25_05010;Dbxref=NCBI_GP:UUF03370.1;Name=UUF03370.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451748.1;locus_tag=NDY25_05010;product=endopeptidase La;protein_id=UUF03370.1;transl_table=11 CP098604.1 Genbank gene 1146202 1147488 . - . ID=gene-NDY25_05015;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=NDY25_05015 CP098604.1 Protein Homology CDS 1146202 1147488 . - 0 ID=cds-UUF03371.1;Parent=gene-NDY25_05015;Dbxref=NCBI_GP:UUF03371.1;Name=UUF03371.1;Ontology_term=GO:0005524,GO:0016887,GO:0046983;gbkey=CDS;gene=clpX;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451747.1;locus_tag=NDY25_05015;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=UUF03371.1;transl_table=11 CP098604.1 Genbank gene 1147613 1148239 . - . ID=gene-NDY25_05020;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=NDY25_05020 CP098604.1 Protein Homology CDS 1147613 1148239 . - 0 ID=cds-UUF03372.1;Parent=gene-NDY25_05020;Dbxref=NCBI_GP:UUF03372.1;Name=UUF03372.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806026.1;locus_tag=NDY25_05020;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=UUF03372.1;transl_table=11 CP098604.1 Genbank gene 1148363 1149658 . - . ID=gene-NDY25_05025;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=NDY25_05025 CP098604.1 Protein Homology CDS 1148363 1149658 . - 0 ID=cds-UUF03373.1;Parent=gene-NDY25_05025;Dbxref=NCBI_GP:UUF03373.1;Name=UUF03373.1;Ontology_term=GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process='de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019659529.1;locus_tag=NDY25_05025;product=trigger factor;protein_id=UUF03373.1;transl_table=11 CP098604.1 Genbank gene 1149862 1149946 . - . ID=gene-NDY25_05030;Name=NDY25_05030;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05030 CP098604.1 tRNAscan-SE tRNA 1149862 1149946 . - . ID=rna-NDY25_05030;Parent=gene-NDY25_05030;anticodon=(pos:complement(1149910..1149912));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05030;product=tRNA-Leu CP098604.1 tRNAscan-SE exon 1149862 1149946 . - . ID=exon-NDY25_05030-1;Parent=rna-NDY25_05030;anticodon=(pos:complement(1149910..1149912));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05030;product=tRNA-Leu CP098604.1 Genbank gene 1150214 1151509 . + . ID=gene-NDY25_05035;Name=NDY25_05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05035 CP098604.1 Protein Homology CDS 1150214 1151509 . + 0 ID=cds-UUF03374.1;Parent=gene-NDY25_05035;Dbxref=NCBI_GP:UUF03374.1;Name=UUF03374.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451744.1;locus_tag=NDY25_05035;product=ATP-binding protein;protein_id=UUF03374.1;transl_table=11 CP098604.1 Genbank gene 1151514 1151960 . - . ID=gene-NDY25_05040;Name=NDY25_05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05040 CP098604.1 Protein Homology CDS 1151514 1151960 . - 0 ID=cds-UUF03375.1;Parent=gene-NDY25_05040;Dbxref=NCBI_GP:UUF03375.1;Name=UUF03375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451743.1;locus_tag=NDY25_05040;product=hypothetical protein;protein_id=UUF03375.1;transl_table=11 CP098604.1 Genbank gene 1152200 1152275 . - . ID=gene-NDY25_05045;Name=NDY25_05045;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05045 CP098604.1 tRNAscan-SE tRNA 1152200 1152275 . - . ID=rna-NDY25_05045;Parent=gene-NDY25_05045;anticodon=(pos:complement(1152240..1152242));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05045;product=tRNA-Lys CP098604.1 tRNAscan-SE exon 1152200 1152275 . - . ID=exon-NDY25_05045-1;Parent=rna-NDY25_05045;anticodon=(pos:complement(1152240..1152242));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05045;product=tRNA-Lys CP098604.1 Genbank gene 1152360 1152436 . - . ID=gene-NDY25_05050;Name=NDY25_05050;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05050 CP098604.1 tRNAscan-SE tRNA 1152360 1152436 . - . ID=rna-NDY25_05050;Parent=gene-NDY25_05050;anticodon=(pos:complement(1152400..1152402));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05050;product=tRNA-His CP098604.1 tRNAscan-SE exon 1152360 1152436 . - . ID=exon-NDY25_05050-1;Parent=rna-NDY25_05050;anticodon=(pos:complement(1152400..1152402));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05050;product=tRNA-His CP098604.1 Genbank gene 1152469 1152545 . - . ID=gene-NDY25_05055;Name=NDY25_05055;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05055 CP098604.1 tRNAscan-SE tRNA 1152469 1152545 . - . ID=rna-NDY25_05055;Parent=gene-NDY25_05055;anticodon=(pos:complement(1152509..1152511));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05055;product=tRNA-Arg CP098604.1 tRNAscan-SE exon 1152469 1152545 . - . ID=exon-NDY25_05055-1;Parent=rna-NDY25_05055;anticodon=(pos:complement(1152509..1152511));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05055;product=tRNA-Arg CP098604.1 Genbank gene 1152588 1152664 . - . ID=gene-NDY25_05060;Name=NDY25_05060;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05060 CP098604.1 tRNAscan-SE tRNA 1152588 1152664 . - . ID=rna-NDY25_05060;Parent=gene-NDY25_05060;anticodon=(pos:complement(1152628..1152630));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05060;product=tRNA-Pro CP098604.1 tRNAscan-SE exon 1152588 1152664 . - . ID=exon-NDY25_05060-1;Parent=rna-NDY25_05060;anticodon=(pos:complement(1152628..1152630));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05060;product=tRNA-Pro CP098604.1 Genbank gene 1152817 1153578 . + . ID=gene-NDY25_05065;Name=NDY25_05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05065 CP098604.1 Protein Homology CDS 1152817 1153578 . + 0 ID=cds-UUF03376.1;Parent=gene-NDY25_05065;Dbxref=NCBI_GP:UUF03376.1;Name=UUF03376.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024221.2;locus_tag=NDY25_05065;product=Bax inhibitor-1/YccA family protein;protein_id=UUF03376.1;transl_table=11 CP098604.1 Genbank gene 1153694 1154701 . - . ID=gene-NDY25_05070;Name=NDY25_05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05070 CP098604.1 Protein Homology CDS 1153694 1154701 . - 0 ID=cds-UUF03377.1;Parent=gene-NDY25_05070;Dbxref=NCBI_GP:UUF03377.1;Name=UUF03377.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852046.1;locus_tag=NDY25_05070;product=isocitrate dehydrogenase;protein_id=UUF03377.1;transl_table=11 CP098604.1 Genbank gene 1154961 1155356 . - . ID=gene-NDY25_05075;Name=NDY25_05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05075 CP098604.1 Protein Homology CDS 1154961 1155356 . - 0 ID=cds-UUF03378.1;Parent=gene-NDY25_05075;Dbxref=NCBI_GP:UUF03378.1;Name=UUF03378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483760.1;locus_tag=NDY25_05075;product=carboxymuconolactone decarboxylase family protein;protein_id=UUF03378.1;transl_table=11 CP098604.1 Genbank gene 1155353 1155661 . - . ID=gene-NDY25_05080;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=NDY25_05080 CP098604.1 Protein Homology CDS 1155353 1155661 . - 0 ID=cds-UUF03379.1;Parent=gene-NDY25_05080;Dbxref=NCBI_GP:UUF03379.1;Name=UUF03379.1;Ontology_term=GO:0015036;gbkey=CDS;gene=grxC;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927845.1;locus_tag=NDY25_05080;product=glutaredoxin 3;protein_id=UUF03379.1;transl_table=11 CP098604.1 Genbank gene 1155810 1157456 . + . ID=gene-NDY25_05085;Name=NDY25_05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05085 CP098604.1 Protein Homology CDS 1155810 1157456 . + 0 ID=cds-UUF03380.1;Parent=gene-NDY25_05085;Dbxref=NCBI_GP:UUF03380.1;Name=UUF03380.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483755.1;locus_tag=NDY25_05085;product=M48 family metalloprotease;protein_id=UUF03380.1;transl_table=11 CP098604.1 Genbank gene 1157652 1158341 . + . ID=gene-NDY25_05090;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=NDY25_05090 CP098604.1 Protein Homology CDS 1157652 1158341 . + 0 ID=cds-UUF03381.1;Parent=gene-NDY25_05090;Dbxref=NCBI_GP:UUF03381.1;Name=UUF03381.1;Ontology_term=GO:0000160,GO:0006355,GO:0006796,GO:0000156,GO:0003700;gbkey=CDS;gene=phoB;go_function=phosphorelay response regulator activity|0000156||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of transcription%2C DNA-templated|0006355||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013535715.1;locus_tag=NDY25_05090;product=phosphate regulon transcriptional regulator PhoB;protein_id=UUF03381.1;transl_table=11 CP098604.1 Genbank gene 1158421 1159749 . + . ID=gene-NDY25_05095;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=NDY25_05095 CP098604.1 Protein Homology CDS 1158421 1159749 . + 0 ID=cds-UUF03382.1;Parent=gene-NDY25_05095;Dbxref=NCBI_GP:UUF03382.1;Name=UUF03382.1;Ontology_term=GO:0000160,GO:0006796,GO:0000155;gbkey=CDS;gene=phoR;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158112.1;locus_tag=NDY25_05095;product=phosphate regulon sensor histidine kinase PhoR;protein_id=UUF03382.1;transl_table=11 CP098604.1 Genbank gene 1159871 1161973 . + . ID=gene-NDY25_05100;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=NDY25_05100 CP098604.1 Protein Homology CDS 1159871 1161973 . + 0 ID=cds-UUF04537.1;Parent=gene-NDY25_05100;Dbxref=NCBI_GP:UUF04537.1;Name=UUF04537.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506857.1;locus_tag=NDY25_05100;product=polyphosphate kinase 1;protein_id=UUF04537.1;transl_table=11 CP098604.1 Genbank gene 1162139 1163665 . + . ID=gene-NDY25_05105;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=NDY25_05105 CP098604.1 Protein Homology CDS 1162139 1163665 . + 0 ID=cds-UUF03383.1;Parent=gene-NDY25_05105;Dbxref=NCBI_GP:UUF03383.1;Name=UUF03383.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036174.1;locus_tag=NDY25_05105;product=exopolyphosphatase;protein_id=UUF03383.1;transl_table=11 CP098604.1 Genbank gene 1163882 1165018 . + . ID=gene-NDY25_05110;Name=NDY25_05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05110 CP098604.1 Protein Homology CDS 1163882 1165018 . + 0 ID=cds-UUF04538.1;Parent=gene-NDY25_05110;Dbxref=NCBI_GP:UUF04538.1;Name=UUF04538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922250.1;locus_tag=NDY25_05110;product=glycosyltransferase family 1 protein;protein_id=UUF04538.1;transl_table=11 CP098604.1 Genbank gene 1164999 1165541 . + . ID=gene-NDY25_05115;Name=NDY25_05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05115 CP098604.1 Protein Homology CDS 1164999 1165541 . + 0 ID=cds-UUF03384.1;Parent=gene-NDY25_05115;Dbxref=NCBI_GP:UUF03384.1;Name=UUF03384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409295.1;locus_tag=NDY25_05115;product=phosphatase PAP2 family protein;protein_id=UUF03384.1;transl_table=11 CP098604.1 Genbank gene 1165866 1166609 . + . ID=gene-NDY25_05120;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=NDY25_05120 CP098604.1 Protein Homology CDS 1165866 1166609 . + 0 ID=cds-UUF03385.1;Parent=gene-NDY25_05120;Dbxref=NCBI_GP:UUF03385.1;Name=UUF03385.1;Ontology_term=GO:0009245,GO:0008758;gbkey=CDS;gene=lpxH;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439087.1;locus_tag=NDY25_05120;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=UUF03385.1;transl_table=11 CP098604.1 Genbank gene 1166641 1167060 . - . ID=gene-NDY25_05125;Name=NDY25_05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05125 CP098604.1 Protein Homology CDS 1166641 1167060 . - 0 ID=cds-UUF03386.1;Parent=gene-NDY25_05125;Dbxref=NCBI_GP:UUF03386.1;Name=UUF03386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571624.1;locus_tag=NDY25_05125;product=hypothetical protein;protein_id=UUF03386.1;transl_table=11 CP098604.1 Genbank gene 1167197 1168450 . - . ID=gene-NDY25_05130;Name=NDY25_05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05130 CP098604.1 Protein Homology CDS 1167197 1168450 . - 0 ID=cds-UUF03387.1;Parent=gene-NDY25_05130;Dbxref=NCBI_GP:UUF03387.1;Name=UUF03387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506851.1;locus_tag=NDY25_05130;product=zinc-dependent metalloprotease;protein_id=UUF03387.1;transl_table=11 CP098604.1 Genbank gene 1168638 1169441 . - . ID=gene-NDY25_05135;Name=NDY25_05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05135 CP098604.1 Protein Homology CDS 1168638 1169441 . - 0 ID=cds-UUF04539.1;Parent=gene-NDY25_05135;Dbxref=NCBI_GP:UUF04539.1;Name=UUF04539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806608.1;locus_tag=NDY25_05135;product=ferritin-like domain-containing protein;protein_id=UUF04539.1;transl_table=11 CP098604.1 Genbank gene 1169503 1170969 . - . ID=gene-NDY25_05140;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=NDY25_05140 CP098604.1 Protein Homology CDS 1169503 1170969 . - 0 ID=cds-UUF03388.1;Parent=gene-NDY25_05140;Dbxref=NCBI_GP:UUF03388.1;Name=UUF03388.1;Ontology_term=GO:0009152,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806604.1;locus_tag=NDY25_05140;product=amidophosphoribosyltransferase;protein_id=UUF03388.1;transl_table=11 CP098604.1 Genbank gene 1171000 1171746 . - . ID=gene-NDY25_05145;Name=NDY25_05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05145 CP098604.1 Protein Homology CDS 1171000 1171746 . - 0 ID=cds-UUF03389.1;Parent=gene-NDY25_05145;Dbxref=NCBI_GP:UUF03389.1;Name=UUF03389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301875.1;locus_tag=NDY25_05145;product=CvpA family protein;protein_id=UUF03389.1;transl_table=11 CP098604.1 Genbank gene 1171977 1173044 . - . ID=gene-NDY25_05150;Name=NDY25_05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05150 CP098604.1 Protein Homology CDS 1171977 1173044 . - 0 ID=cds-UUF03390.1;Parent=gene-NDY25_05150;Dbxref=NCBI_GP:UUF03390.1;Name=UUF03390.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301876.1;locus_tag=NDY25_05150;product=SPOR domain-containing protein;protein_id=UUF03390.1;transl_table=11 CP098604.1 Genbank gene 1173104 1174396 . - . ID=gene-NDY25_05155;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=NDY25_05155 CP098604.1 Protein Homology CDS 1173104 1174396 . - 0 ID=cds-UUF03391.1;Parent=gene-NDY25_05155;Dbxref=NCBI_GP:UUF03391.1;Name=UUF03391.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449396.1;locus_tag=NDY25_05155;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=UUF03391.1;transl_table=11 CP098604.1 Genbank gene 1174533 1175099 . - . ID=gene-NDY25_05160;Name=NDY25_05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05160 CP098604.1 Protein Homology CDS 1174533 1175099 . - 0 ID=cds-UUF03392.1;Parent=gene-NDY25_05160;Dbxref=NCBI_GP:UUF03392.1;Name=UUF03392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036163.1;locus_tag=NDY25_05160;product=hypothetical protein;protein_id=UUF03392.1;transl_table=11 CP098604.1 Genbank gene 1175130 1175774 . - . ID=gene-NDY25_05165;Name=NDY25_05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05165 CP098604.1 Protein Homology CDS 1175130 1175774 . - 0 ID=cds-UUF03393.1;Parent=gene-NDY25_05165;Dbxref=NCBI_GP:UUF03393.1;Name=UUF03393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017910762.1;locus_tag=NDY25_05165;product=histidine phosphatase family protein;protein_id=UUF03393.1;transl_table=11 CP098604.1 Genbank gene 1175866 1177950 . - . ID=gene-NDY25_05170;Name=NDY25_05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05170 CP098604.1 Protein Homology CDS 1175866 1177950 . - 0 ID=cds-UUF04540.1;Parent=gene-NDY25_05170;Dbxref=NCBI_GP:UUF04540.1;Name=UUF04540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156243.1;locus_tag=NDY25_05170;product=S46 family peptidase;protein_id=UUF04540.1;transl_table=11 CP098604.1 Genbank gene 1178193 1180274 . - . ID=gene-NDY25_05175;Name=NDY25_05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05175 CP098604.1 Protein Homology CDS 1178193 1180274 . - 0 ID=cds-UUF03394.1;Parent=gene-NDY25_05175;Dbxref=NCBI_GP:UUF03394.1;Name=UUF03394.1;Ontology_term=GO:0004629;gbkey=CDS;go_function=phospholipase C activity|0004629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506843.1;locus_tag=NDY25_05175;product=phospholipase C%2C phosphocholine-specific;protein_id=UUF03394.1;transl_table=11 CP098604.1 Genbank gene 1180380 1182815 . + . ID=gene-NDY25_05180;Name=NDY25_05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05180 CP098604.1 Protein Homology CDS 1180380 1182815 . + 0 ID=cds-UUF03395.1;Parent=gene-NDY25_05180;Dbxref=NCBI_GP:UUF03395.1;Name=UUF03395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158532.1;locus_tag=NDY25_05180;product=TonB-dependent receptor;protein_id=UUF03395.1;transl_table=11 CP098604.1 Genbank gene 1183085 1184119 . + . ID=gene-NDY25_05185;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=NDY25_05185 CP098604.1 Protein Homology CDS 1183085 1184119 . + 0 ID=cds-UUF03396.1;Parent=gene-NDY25_05185;Dbxref=NCBI_GP:UUF03396.1;Name=UUF03396.1;Ontology_term=GO:0006567,GO:0008743;gbkey=CDS;gene=tdh;go_function=L-threonine 3-dehydrogenase activity|0008743||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164734.1;locus_tag=NDY25_05185;product=L-threonine 3-dehydrogenase;protein_id=UUF03396.1;transl_table=11 CP098604.1 Genbank gene 1184740 1185456 . - . ID=gene-NDY25_05190;Name=NDY25_05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05190 CP098604.1 Protein Homology CDS 1184740 1185456 . - 0 ID=cds-UUF03397.1;Parent=gene-NDY25_05190;Dbxref=NCBI_GP:UUF03397.1;Name=UUF03397.1;Ontology_term=GO:0015288;gbkey=CDS;go_function=porin activity|0015288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159554.1;locus_tag=NDY25_05190;product=TorF family putative porin;protein_id=UUF03397.1;transl_table=11 CP098604.1 Genbank gene 1185754 1186785 . - . ID=gene-NDY25_05195;Name=NDY25_05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05195 CP098604.1 Protein Homology CDS 1185754 1186785 . - 0 ID=cds-UUF04541.1;Parent=gene-NDY25_05195;Dbxref=NCBI_GP:UUF04541.1;Name=UUF04541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902217.1;locus_tag=NDY25_05195;product=sulfate/molybdate ABC transporter ATP-binding protein;protein_id=UUF04541.1;transl_table=11 CP098604.1 Genbank gene 1186793 1187746 . - . ID=gene-NDY25_05200;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=NDY25_05200 CP098604.1 Protein Homology CDS 1186793 1187746 . - 0 ID=cds-UUF03398.1;Parent=gene-NDY25_05200;Dbxref=NCBI_GP:UUF03398.1;Name=UUF03398.1;Ontology_term=GO:0008272,GO:0015419,GO:0005887,GO:0055052;gbkey=CDS;gene=cysW;go_component=integral component of plasma membrane|0005887||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158531.1;locus_tag=NDY25_05200;product=sulfate ABC transporter permease subunit CysW;protein_id=UUF03398.1;transl_table=11 CP098604.1 Genbank gene 1187743 1188603 . - . ID=gene-NDY25_05205;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=NDY25_05205 CP098604.1 Protein Homology CDS 1187743 1188603 . - 0 ID=cds-UUF03399.1;Parent=gene-NDY25_05205;Dbxref=NCBI_GP:UUF03399.1;Name=UUF03399.1;Ontology_term=GO:0008272,GO:0015419,GO:0005887,GO:0055052;gbkey=CDS;gene=cysT;go_component=integral component of plasma membrane|0005887||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transport|0008272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036155.1;locus_tag=NDY25_05205;product=sulfate ABC transporter permease subunit CysT;protein_id=UUF03399.1;transl_table=11 CP098604.1 Genbank gene 1188607 1189707 . - . ID=gene-NDY25_05210;Name=NDY25_05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05210 CP098604.1 Protein Homology CDS 1188607 1189707 . - 0 ID=cds-UUF03400.1;Parent=gene-NDY25_05210;Dbxref=NCBI_GP:UUF03400.1;Name=UUF03400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089499.1;locus_tag=NDY25_05210;product=sulfate ABC transporter substrate-binding protein;protein_id=UUF03400.1;transl_table=11 CP098604.1 Genbank gene 1189798 1191006 . + . ID=gene-NDY25_05215;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=NDY25_05215 CP098604.1 Protein Homology CDS 1189798 1191006 . + 0 ID=cds-UUF03401.1;Parent=gene-NDY25_05215;Dbxref=NCBI_GP:UUF03401.1;Name=UUF03401.1;Ontology_term=GO:0006567,GO:0008890;gbkey=CDS;gene=kbl;go_function=glycine C-acetyltransferase activity|0008890||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814591.1;locus_tag=NDY25_05215;product=glycine C-acetyltransferase;protein_id=UUF03401.1;transl_table=11 CP098604.1 Genbank gene 1191006 1191395 . + . ID=gene-NDY25_05220;Name=NDY25_05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05220 CP098604.1 Protein Homology CDS 1191006 1191395 . + 0 ID=cds-UUF03402.1;Parent=gene-NDY25_05220;Dbxref=NCBI_GP:UUF03402.1;Name=UUF03402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368604.1;locus_tag=NDY25_05220;product=HNH endonuclease;protein_id=UUF03402.1;transl_table=11 CP098604.1 Genbank gene 1191349 1192200 . - . ID=gene-NDY25_05225;Name=NDY25_05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05225 CP098604.1 Protein Homology CDS 1191349 1192200 . - 0 ID=cds-UUF03403.1;Parent=gene-NDY25_05225;Dbxref=NCBI_GP:UUF03403.1;Name=UUF03403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156232.1;locus_tag=NDY25_05225;product=rRNA pseudouridine synthase;protein_id=UUF03403.1;transl_table=11 CP098604.1 Genbank gene 1192220 1192738 . - . ID=gene-NDY25_05230;Name=NDY25_05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05230 CP098604.1 Protein Homology CDS 1192220 1192738 . - 0 ID=cds-UUF03404.1;Parent=gene-NDY25_05230;Dbxref=NCBI_GP:UUF03404.1;Name=UUF03404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156231.1;locus_tag=NDY25_05230;product=hypothetical protein;protein_id=UUF03404.1;transl_table=11 CP098604.1 Genbank gene 1192929 1194026 . - . ID=gene-NDY25_05235;Name=NDY25_05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05235 CP098604.1 Protein Homology CDS 1192929 1194026 . - 0 ID=cds-UUF04542.1;Parent=gene-NDY25_05235;Dbxref=NCBI_GP:UUF04542.1;Name=UUF04542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171142.1;locus_tag=NDY25_05235;product=OmpA family protein;protein_id=UUF04542.1;transl_table=11 CP098604.1 Genbank gene 1194438 1195460 . + . ID=gene-NDY25_05240;Name=NDY25_05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05240 CP098604.1 Protein Homology CDS 1194438 1195460 . + 0 ID=cds-UUF03405.1;Parent=gene-NDY25_05240;Dbxref=NCBI_GP:UUF03405.1;Name=UUF03405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005998400.1;locus_tag=NDY25_05240;product=zinc-binding alcohol dehydrogenase family protein;protein_id=UUF03405.1;transl_table=11 CP098604.1 Genbank gene 1195620 1197659 . + . ID=gene-NDY25_05245;Name=NDY25_05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05245 CP098604.1 Protein Homology CDS 1195620 1197659 . + 0 ID=cds-UUF03406.1;Parent=gene-NDY25_05245;Dbxref=NCBI_GP:UUF03406.1;Name=UUF03406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300705.1;locus_tag=NDY25_05245;product=NADPH-dependent 2%2C4-dienoyl-CoA reductase;protein_id=UUF03406.1;transl_table=11 CP098604.1 Genbank gene 1197846 1197923 . - . ID=gene-NDY25_05250;Name=NDY25_05250;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_05250 CP098604.1 cmsearch ncRNA 1197846 1197923 . - . ID=rna-NDY25_05250;Parent=gene-NDY25_05250;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_05250;product=sX9 sRNA CP098604.1 cmsearch exon 1197846 1197923 . - . ID=exon-NDY25_05250-1;Parent=rna-NDY25_05250;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_05250;product=sX9 sRNA CP098604.1 Genbank gene 1198114 1199424 . + . ID=gene-NDY25_05255;Name=NDY25_05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05255 CP098604.1 Protein Homology CDS 1198114 1199424 . + 0 ID=cds-UUF04543.1;Parent=gene-NDY25_05255;Dbxref=NCBI_GP:UUF04543.1;Name=UUF04543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904175.1;locus_tag=NDY25_05255;product=MFS transporter;protein_id=UUF04543.1;transl_table=11 CP098604.1 Genbank gene 1200239 1200700 . + . ID=gene-NDY25_05260;Name=NDY25_05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05260 CP098604.1 Protein Homology CDS 1200239 1200700 . + 0 ID=cds-UUF03407.1;Parent=gene-NDY25_05260;Dbxref=NCBI_GP:UUF03407.1;Name=UUF03407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470606.1;locus_tag=NDY25_05260;product=cell wall hydrolase;protein_id=UUF03407.1;transl_table=11 CP098604.1 Genbank gene 1200767 1201381 . + . ID=gene-NDY25_05265;Name=NDY25_05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05265 CP098604.1 Protein Homology CDS 1200767 1201381 . + 0 ID=cds-UUF03408.1;Parent=gene-NDY25_05265;Dbxref=NCBI_GP:UUF03408.1;Name=UUF03408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486641.1;locus_tag=NDY25_05265;product=glutathione binding-like protein;protein_id=UUF03408.1;transl_table=11 CP098604.1 Genbank gene 1201555 1202541 . - . ID=gene-NDY25_05270;Name=NDY25_05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05270 CP098604.1 Protein Homology CDS 1201555 1202541 . - 0 ID=cds-UUF03409.1;Parent=gene-NDY25_05270;Dbxref=NCBI_GP:UUF03409.1;Name=UUF03409.1;Ontology_term=GO:0006108,GO:0016615;gbkey=CDS;go_function=malate dehydrogenase activity|0016615||IEA;go_process=malate metabolic process|0006108||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439107.1;locus_tag=NDY25_05270;product=malate dehydrogenase;protein_id=UUF03409.1;transl_table=11 CP098604.1 Genbank gene 1202658 1203152 . - . ID=gene-NDY25_05275;Name=NDY25_05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05275 CP098604.1 Protein Homology CDS 1202658 1203152 . - 0 ID=cds-UUF03410.1;Parent=gene-NDY25_05275;Dbxref=NCBI_GP:UUF03410.1;Name=UUF03410.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993409.1;locus_tag=NDY25_05275;product=peptidylprolyl isomerase;protein_id=UUF03410.1;transl_table=11 CP098604.1 Genbank gene 1203371 1205200 . + . ID=gene-NDY25_05280;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=NDY25_05280 CP098604.1 Protein Homology CDS 1203371 1205200 . + 0 ID=cds-UUF03411.1;Parent=gene-NDY25_05280;Dbxref=NCBI_GP:UUF03411.1;Name=UUF03411.1;Ontology_term=GO:0006412,GO:0006950,GO:0005525;gbkey=CDS;gene=typA;go_function=GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904579.1;locus_tag=NDY25_05280;product=translational GTPase TypA;protein_id=UUF03411.1;transl_table=11 CP098604.1 Genbank gene 1205273 1205692 . + . ID=gene-NDY25_05285;Name=NDY25_05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05285 CP098604.1 Protein Homology CDS 1205273 1205692 . + 0 ID=cds-UUF04544.1;Parent=gene-NDY25_05285;Dbxref=NCBI_GP:UUF04544.1;Name=UUF04544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161510.1;locus_tag=NDY25_05285;product=DUF2127 domain-containing protein;protein_id=UUF04544.1;transl_table=11 CP098604.1 Genbank gene 1205802 1207418 . + . ID=gene-NDY25_05290;Name=NDY25_05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05290 CP098604.1 Protein Homology CDS 1205802 1207418 . + 0 ID=cds-UUF04545.1;Parent=gene-NDY25_05290;Dbxref=NCBI_GP:UUF04545.1;Name=UUF04545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450653.1;locus_tag=NDY25_05290;product=amidase;protein_id=UUF04545.1;transl_table=11 CP098604.1 Genbank gene 1207408 1208535 . - . ID=gene-NDY25_05295;Name=NDY25_05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05295 CP098604.1 Protein Homology CDS 1207408 1208535 . - 0 ID=cds-UUF03412.1;Parent=gene-NDY25_05295;Dbxref=NCBI_GP:UUF03412.1;Name=UUF03412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156225.1;locus_tag=NDY25_05295;product=mechanosensitive ion channel family protein;protein_id=UUF03412.1;transl_table=11 CP098604.1 Genbank gene 1208622 1210013 . - . ID=gene-NDY25_05300;Name=NDY25_05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05300 CP098604.1 Protein Homology CDS 1208622 1210013 . - 0 ID=cds-UUF03413.1;Parent=gene-NDY25_05300;Dbxref=NCBI_GP:UUF03413.1;Name=UUF03413.1;Ontology_term=GO:0009423,GO:0003849;gbkey=CDS;go_function=3-deoxy-7-phosphoheptulonate synthase activity|0003849||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450651.1;locus_tag=NDY25_05300;product=3-deoxy-7-phosphoheptulonate synthase class II;protein_id=UUF03413.1;transl_table=11 CP098604.1 Genbank gene 1210062 1210580 . - . ID=gene-NDY25_05305;Name=NDY25_05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05305 CP098604.1 Protein Homology CDS 1210062 1210580 . - 0 ID=cds-UUF03414.1;Parent=gene-NDY25_05305;Dbxref=NCBI_GP:UUF03414.1;Name=UUF03414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036135.1;locus_tag=NDY25_05305;product=disulfide bond formation protein B;protein_id=UUF03414.1;transl_table=11 CP098604.1 Genbank gene 1210893 1211276 . - . ID=gene-NDY25_05310;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=NDY25_05310 CP098604.1 Protein Homology CDS 1210893 1211276 . - 0 ID=cds-UUF03415.1;Parent=gene-NDY25_05310;Dbxref=NCBI_GP:UUF03415.1;Name=UUF03415.1;Ontology_term=GO:0006412,GO:0003735,GO:0005762,GO:0022625;gbkey=CDS;gene=rplQ;go_component=mitochondrial large ribosomal subunit|0005762||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340456.1;locus_tag=NDY25_05310;product=50S ribosomal protein L17;protein_id=UUF03415.1;transl_table=11 CP098604.1 Genbank gene 1211458 1212456 . - . ID=gene-NDY25_05315;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=NDY25_05315 CP098604.1 Protein Homology CDS 1211458 1212456 . - 0 ID=cds-UUF03416.1;Parent=gene-NDY25_05315;Dbxref=NCBI_GP:UUF03416.1;Name=UUF03416.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899,GO:0046983;gbkey=CDS;gene=rpoA;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA,protein dimerization activity|0046983||IEA;go_process=transcription%2C DNA-templated|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020852431.1;locus_tag=NDY25_05315;product=DNA-directed RNA polymerase subunit alpha;protein_id=UUF03416.1;transl_table=11 CP098604.1 Genbank gene 1212510 1213136 . - . ID=gene-NDY25_05320;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=NDY25_05320 CP098604.1 Protein Homology CDS 1212510 1213136 . - 0 ID=cds-UUF03417.1;Parent=gene-NDY25_05320;Dbxref=NCBI_GP:UUF03417.1;Name=UUF03417.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145446.1;locus_tag=NDY25_05320;product=30S ribosomal protein S4;protein_id=UUF03417.1;transl_table=11 CP098604.1 Genbank gene 1213151 1213543 . - . ID=gene-NDY25_05325;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=NDY25_05325 CP098604.1 Protein Homology CDS 1213151 1213543 . - 0 ID=cds-UUF03418.1;Parent=gene-NDY25_05325;Dbxref=NCBI_GP:UUF03418.1;Name=UUF03418.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_004996786.1;locus_tag=NDY25_05325;product=30S ribosomal protein S11;protein_id=UUF03418.1;transl_table=11 CP098604.1 Genbank gene 1213554 1213910 . - . ID=gene-NDY25_05330;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=NDY25_05330 CP098604.1 Protein Homology CDS 1213554 1213910 . - 0 ID=cds-UUF03419.1;Parent=gene-NDY25_05330;Dbxref=NCBI_GP:UUF03419.1;Name=UUF03419.1;Ontology_term=GO:0006412,GO:0003735,GO:0022627;gbkey=CDS;gene=rpsM;go_component=cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004154500.1;locus_tag=NDY25_05330;product=30S ribosomal protein S13;protein_id=UUF03419.1;transl_table=11 CP098604.1 Genbank gene 1214245 1215612 . - . ID=gene-NDY25_05335;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=NDY25_05335 CP098604.1 Protein Homology CDS 1214245 1215612 . - 0 ID=cds-UUF03420.1;Parent=gene-NDY25_05335;Dbxref=NCBI_GP:UUF03420.1;Name=UUF03420.1;Ontology_term=GO:0043952,GO:0015450,GO:0005887;gbkey=CDS;gene=secY;go_component=integral component of plasma membrane|0005887||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486674.1;locus_tag=NDY25_05335;product=preprotein translocase subunit SecY;protein_id=UUF03420.1;transl_table=11 CP098604.1 Genbank gene 1215620 1216063 . - . ID=gene-NDY25_05340;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=NDY25_05340 CP098604.1 Protein Homology CDS 1215620 1216063 . - 0 ID=cds-UUF03421.1;Parent=gene-NDY25_05340;Dbxref=NCBI_GP:UUF03421.1;Name=UUF03421.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplO;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486676.1;locus_tag=NDY25_05340;product=50S ribosomal protein L15;protein_id=UUF03421.1;transl_table=11 CP098604.1 Genbank gene 1216068 1216259 . - . ID=gene-NDY25_05345;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=NDY25_05345 CP098604.1 Protein Homology CDS 1216068 1216259 . - 0 ID=cds-UUF03422.1;Parent=gene-NDY25_05345;Dbxref=NCBI_GP:UUF03422.1;Name=UUF03422.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmD;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486678.1;locus_tag=NDY25_05345;product=50S ribosomal protein L30;protein_id=UUF03422.1;transl_table=11 CP098604.1 Genbank gene 1216252 1216794 . - . ID=gene-NDY25_05350;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=NDY25_05350 CP098604.1 Protein Homology CDS 1216252 1216794 . - 0 ID=cds-UUF03423.1;Parent=gene-NDY25_05350;Dbxref=NCBI_GP:UUF03423.1;Name=UUF03423.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsE;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145411.1;locus_tag=NDY25_05350;product=30S ribosomal protein S5;protein_id=UUF03423.1;transl_table=11 CP098604.1 Genbank gene 1216954 1217313 . - . ID=gene-NDY25_05355;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=NDY25_05355 CP098604.1 Protein Homology CDS 1216954 1217313 . - 0 ID=cds-UUF03424.1;Parent=gene-NDY25_05355;Dbxref=NCBI_GP:UUF03424.1;Name=UUF03424.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplR;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811659.1;locus_tag=NDY25_05355;product=50S ribosomal protein L18;protein_id=UUF03424.1;transl_table=11 CP098604.1 Genbank gene 1217405 1217932 . - . ID=gene-NDY25_05360;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=NDY25_05360 CP098604.1 Protein Homology CDS 1217405 1217932 . - 0 ID=cds-UUF03425.1;Parent=gene-NDY25_05360;Dbxref=NCBI_GP:UUF03425.1;Name=UUF03425.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0022625;gbkey=CDS;gene=rplF;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450642.1;locus_tag=NDY25_05360;product=50S ribosomal protein L6;protein_id=UUF03425.1;transl_table=11 CP098604.1 Genbank gene 1217948 1218346 . - . ID=gene-NDY25_05365;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=NDY25_05365 CP098604.1 Protein Homology CDS 1217948 1218346 . - 0 ID=cds-UUF03426.1;Parent=gene-NDY25_05365;Dbxref=NCBI_GP:UUF03426.1;Name=UUF03426.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932726.1;locus_tag=NDY25_05365;product=30S ribosomal protein S8;protein_id=UUF03426.1;transl_table=11 CP098604.1 Genbank gene 1218551 1218856 . - . ID=gene-NDY25_05370;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=NDY25_05370 CP098604.1 Protein Homology CDS 1218551 1218856 . - 0 ID=cds-UUF03427.1;Parent=gene-NDY25_05370;Dbxref=NCBI_GP:UUF03427.1;Name=UUF03427.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917137.1;locus_tag=NDY25_05370;product=30S ribosomal protein S14;protein_id=UUF03427.1;transl_table=11 CP098604.1 Genbank gene 1218875 1219417 . - . ID=gene-NDY25_05375;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=NDY25_05375 CP098604.1 Protein Homology CDS 1218875 1219417 . - 0 ID=cds-UUF03428.1;Parent=gene-NDY25_05375;Dbxref=NCBI_GP:UUF03428.1;Name=UUF03428.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486694.1;locus_tag=NDY25_05375;product=50S ribosomal protein L5;protein_id=UUF03428.1;transl_table=11 CP098604.1 Genbank gene 1219429 1219746 . - . ID=gene-NDY25_05380;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=NDY25_05380 CP098604.1 Protein Homology CDS 1219429 1219746 . - 0 ID=cds-UUF03429.1;Parent=gene-NDY25_05380;Dbxref=NCBI_GP:UUF03429.1;Name=UUF03429.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplX;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260025.1;locus_tag=NDY25_05380;product=50S ribosomal protein L24;protein_id=UUF03429.1;transl_table=11 CP098604.1 Genbank gene 1219762 1220130 . - . ID=gene-NDY25_05385;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=NDY25_05385 CP098604.1 Protein Homology CDS 1219762 1220130 . - 0 ID=cds-UUF03430.1;Parent=gene-NDY25_05385;Dbxref=NCBI_GP:UUF03430.1;Name=UUF03430.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplN;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=NDY25_05385;product=50S ribosomal protein L14;protein_id=UUF03430.1;transl_table=11 CP098604.1 Genbank gene 1220145 1220414 . - . ID=gene-NDY25_05390;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=NDY25_05390 CP098604.1 Protein Homology CDS 1220145 1220414 . - 0 ID=cds-UUF03431.1;Parent=gene-NDY25_05390;Dbxref=NCBI_GP:UUF03431.1;Name=UUF03431.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993374.1;locus_tag=NDY25_05390;product=30S ribosomal protein S17;protein_id=UUF03431.1;transl_table=11 CP098604.1 Genbank gene 1220426 1220611 . - . ID=gene-NDY25_05395;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=NDY25_05395 CP098604.1 Protein Homology CDS 1220426 1220611 . - 0 ID=cds-UUF03432.1;Parent=gene-NDY25_05395;Dbxref=NCBI_GP:UUF03432.1;Name=UUF03432.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmC;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050639.1;locus_tag=NDY25_05395;product=50S ribosomal protein L29;protein_id=UUF03432.1;transl_table=11 CP098604.1 Genbank gene 1220611 1221024 . - . ID=gene-NDY25_05400;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=NDY25_05400 CP098604.1 Protein Homology CDS 1220611 1221024 . - 0 ID=cds-UUF03433.1;Parent=gene-NDY25_05400;Dbxref=NCBI_GP:UUF03433.1;Name=UUF03433.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplP;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003479591.1;locus_tag=NDY25_05400;product=50S ribosomal protein L16;protein_id=UUF03433.1;transl_table=11 CP098604.1 Genbank gene 1221030 1221764 . - . ID=gene-NDY25_05405;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=NDY25_05405 CP098604.1 Protein Homology CDS 1221030 1221764 . - 0 ID=cds-UUF03434.1;Parent=gene-NDY25_05405;Dbxref=NCBI_GP:UUF03434.1;Name=UUF03434.1;Ontology_term=GO:0006412,GO:0003735,GO:0000312,GO:0022627;gbkey=CDS;gene=rpsC;go_component=plastid small ribosomal subunit|0000312||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811684.1;locus_tag=NDY25_05405;product=30S ribosomal protein S3;protein_id=UUF03434.1;transl_table=11 CP098604.1 Genbank gene 1221782 1222117 . - . ID=gene-NDY25_05410;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=NDY25_05410 CP098604.1 Protein Homology CDS 1221782 1222117 . - 0 ID=cds-UUF03435.1;Parent=gene-NDY25_05410;Dbxref=NCBI_GP:UUF03435.1;Name=UUF03435.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplV;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486710.1;locus_tag=NDY25_05410;product=50S ribosomal protein L22;protein_id=UUF03435.1;transl_table=11 CP098604.1 Genbank gene 1222130 1222399 . - . ID=gene-NDY25_05415;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=NDY25_05415 CP098604.1 Protein Homology CDS 1222130 1222399 . - 0 ID=cds-UUF03436.1;Parent=gene-NDY25_05415;Dbxref=NCBI_GP:UUF03436.1;Name=UUF03436.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsS;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341594.1;locus_tag=NDY25_05415;product=30S ribosomal protein S19;protein_id=UUF03436.1;transl_table=11 CP098604.1 Genbank gene 1222406 1223233 . - . ID=gene-NDY25_05420;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=NDY25_05420 CP098604.1 Protein Homology CDS 1222406 1223233 . - 0 ID=cds-UUF03437.1;Parent=gene-NDY25_05420;Dbxref=NCBI_GP:UUF03437.1;Name=UUF03437.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplB;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009607340.1;locus_tag=NDY25_05420;product=50S ribosomal protein L2;protein_id=UUF03437.1;transl_table=11 CP098604.1 Genbank gene 1223244 1223543 . - . ID=gene-NDY25_05425;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=NDY25_05425 CP098604.1 Protein Homology CDS 1223244 1223543 . - 0 ID=cds-UUF03438.1;Parent=gene-NDY25_05425;Dbxref=NCBI_GP:UUF03438.1;Name=UUF03438.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplW;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004145338.1;locus_tag=NDY25_05425;product=50S ribosomal protein L23;protein_id=UUF03438.1;transl_table=11 CP098604.1 Genbank gene 1223540 1224145 . - . ID=gene-NDY25_05430;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=NDY25_05430 CP098604.1 Protein Homology CDS 1223540 1224145 . - 0 ID=cds-UUF03439.1;Parent=gene-NDY25_05430;Dbxref=NCBI_GP:UUF03439.1;Name=UUF03439.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371054.1;locus_tag=NDY25_05430;product=50S ribosomal protein L4;protein_id=UUF03439.1;transl_table=11 CP098604.1 Genbank gene 1224158 1224808 . - . ID=gene-NDY25_05435;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=NDY25_05435 CP098604.1 Protein Homology CDS 1224158 1224808 . - 0 ID=cds-UUF03440.1;Parent=gene-NDY25_05435;Dbxref=NCBI_GP:UUF03440.1;Name=UUF03440.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036123.1;locus_tag=NDY25_05435;product=50S ribosomal protein L3;protein_id=UUF03440.1;transl_table=11 CP098604.1 Genbank gene 1224820 1225131 . - . ID=gene-NDY25_05440;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=NDY25_05440 CP098604.1 Protein Homology CDS 1224820 1225131 . - 0 ID=cds-UUF03441.1;Parent=gene-NDY25_05440;Dbxref=NCBI_GP:UUF03441.1;Name=UUF03441.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160477.1;locus_tag=NDY25_05440;product=30S ribosomal protein S10;protein_id=UUF03441.1;transl_table=11 CP098604.1 Genbank gene 1225597 1226787 . - . ID=gene-NDY25_05445;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=NDY25_05445 CP098604.1 Protein Homology CDS 1225597 1226787 . - 0 ID=cds-UUF03442.1;Parent=gene-NDY25_05445;Dbxref=NCBI_GP:UUF03442.1;Name=UUF03442.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=NDY25_05445;product=elongation factor Tu;protein_id=UUF03442.1;transl_table=11 CP098604.1 Genbank gene 1226838 1228955 . - . ID=gene-NDY25_05450;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=NDY25_05450 CP098604.1 Protein Homology CDS 1226838 1228955 . - 0 ID=cds-UUF03443.1;Parent=gene-NDY25_05450;Dbxref=NCBI_GP:UUF03443.1;Name=UUF03443.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156211.1;locus_tag=NDY25_05450;product=elongation factor G;protein_id=UUF03443.1;transl_table=11 CP098604.1 Genbank gene 1229096 1229563 . - . ID=gene-NDY25_05455;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=NDY25_05455 CP098604.1 Protein Homology CDS 1229096 1229563 . - 0 ID=cds-UUF03444.1;Parent=gene-NDY25_05455;Dbxref=NCBI_GP:UUF03444.1;Name=UUF03444.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsG;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450629.1;locus_tag=NDY25_05455;product=30S ribosomal protein S7;protein_id=UUF03444.1;transl_table=11 CP098604.1 Genbank gene 1229576 1229950 . - . ID=gene-NDY25_05460;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=NDY25_05460 CP098604.1 Protein Homology CDS 1229576 1229950 . - 0 ID=cds-UUF03445.1;Parent=gene-NDY25_05460;Dbxref=NCBI_GP:UUF03445.1;Name=UUF03445.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsL;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003469157.1;locus_tag=NDY25_05460;product=30S ribosomal protein S12;protein_id=UUF03445.1;transl_table=11 CP098604.1 Genbank gene 1230173 1234390 . - . ID=gene-NDY25_05465;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=NDY25_05465 CP098604.1 Protein Homology CDS 1230173 1234390 . - 0 ID=cds-UUF03446.1;Parent=gene-NDY25_05465;Dbxref=NCBI_GP:UUF03446.1;Name=UUF03446.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoC;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=transcription%2C DNA-templated|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036119.1;locus_tag=NDY25_05465;product=DNA-directed RNA polymerase subunit beta';protein_id=UUF03446.1;transl_table=11 CP098604.1 Genbank gene 1234491 1238642 . - . ID=gene-NDY25_05470;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=NDY25_05470 CP098604.1 Protein Homology CDS 1234491 1238642 . - 0 ID=cds-UUF03447.1;Parent=gene-NDY25_05470;Dbxref=NCBI_GP:UUF03447.1;Name=UUF03447.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoB;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=transcription%2C DNA-templated|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930752.1;locus_tag=NDY25_05470;product=DNA-directed RNA polymerase subunit beta;protein_id=UUF03447.1;transl_table=11 CP098604.1 Genbank gene 1238937 1239302 . - . ID=gene-NDY25_05475;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=NDY25_05475 CP098604.1 Protein Homology CDS 1238937 1239302 . - 0 ID=cds-UUF03448.1;Parent=gene-NDY25_05475;Dbxref=NCBI_GP:UUF03448.1;Name=UUF03448.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplL;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574194.1;locus_tag=NDY25_05475;product=50S ribosomal protein L7/L12;protein_id=UUF03448.1;transl_table=11 CP098604.1 Genbank gene 1239357 1239890 . - . ID=gene-NDY25_05480;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=NDY25_05480 CP098604.1 Protein Homology CDS 1239357 1239890 . - 0 ID=cds-UUF03449.1;Parent=gene-NDY25_05480;Dbxref=NCBI_GP:UUF03449.1;Name=UUF03449.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036116.1;locus_tag=NDY25_05480;product=50S ribosomal protein L10;protein_id=UUF03449.1;transl_table=11 CP098604.1 Genbank gene 1240440 1241138 . - . ID=gene-NDY25_05485;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=NDY25_05485 CP098604.1 Protein Homology CDS 1240440 1241138 . - 0 ID=cds-UUF03450.1;Parent=gene-NDY25_05485;Dbxref=NCBI_GP:UUF03450.1;Name=UUF03450.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplA;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341341.1;locus_tag=NDY25_05485;product=50S ribosomal protein L1;protein_id=UUF03450.1;transl_table=11 CP098604.1 Genbank gene 1241142 1241570 . - . ID=gene-NDY25_05490;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=NDY25_05490 CP098604.1 Protein Homology CDS 1241142 1241570 . - 0 ID=cds-UUF03451.1;Parent=gene-NDY25_05490;Dbxref=NCBI_GP:UUF03451.1;Name=UUF03451.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplK;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993334.1;locus_tag=NDY25_05490;product=50S ribosomal protein L11;protein_id=UUF03451.1;transl_table=11 CP098604.1 Genbank gene 1241769 1242326 . - . ID=gene-NDY25_05495;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=NDY25_05495 CP098604.1 Protein Homology CDS 1241769 1242326 . - 0 ID=cds-UUF03452.1;Parent=gene-NDY25_05495;Dbxref=NCBI_GP:UUF03452.1;Name=UUF03452.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusG;go_process=DNA-templated transcription%2C termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162956.1;locus_tag=NDY25_05495;product=transcription termination/antitermination protein NusG;protein_id=UUF03452.1;transl_table=11 CP098604.1 Genbank gene 1242340 1242750 . - . ID=gene-NDY25_05500;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=NDY25_05500 CP098604.1 Protein Homology CDS 1242340 1242750 . - 0 ID=cds-UUF03453.1;Parent=gene-NDY25_05500;Dbxref=NCBI_GP:UUF03453.1;Name=UUF03453.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993330.1;locus_tag=NDY25_05500;product=preprotein translocase subunit SecE;protein_id=UUF03453.1;transl_table=11 CP098604.1 Genbank gene 1242800 1242875 . - . ID=gene-NDY25_05505;Name=NDY25_05505;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05505 CP098604.1 tRNAscan-SE tRNA 1242800 1242875 . - . ID=rna-NDY25_05505;Parent=gene-NDY25_05505;anticodon=(pos:complement(1242840..1242842));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05505;product=tRNA-Trp CP098604.1 tRNAscan-SE exon 1242800 1242875 . - . ID=exon-NDY25_05505-1;Parent=rna-NDY25_05505;anticodon=(pos:complement(1242840..1242842));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05505;product=tRNA-Trp CP098604.1 Genbank gene 1242982 1244172 . - . ID=gene-NDY25_05510;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=NDY25_05510 CP098604.1 Protein Homology CDS 1242982 1244172 . - 0 ID=cds-UUF03454.1;Parent=gene-NDY25_05510;Dbxref=NCBI_GP:UUF03454.1;Name=UUF03454.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486726.1;locus_tag=NDY25_05510;product=elongation factor Tu;protein_id=UUF03454.1;transl_table=11 CP098604.1 Genbank gene 1244219 1244294 . - . ID=gene-NDY25_05515;Name=NDY25_05515;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05515 CP098604.1 tRNAscan-SE tRNA 1244219 1244294 . - . ID=rna-NDY25_05515;Parent=gene-NDY25_05515;anticodon=(pos:complement(1244259..1244261));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05515;product=tRNA-Thr CP098604.1 tRNAscan-SE exon 1244219 1244294 . - . ID=exon-NDY25_05515-1;Parent=rna-NDY25_05515;anticodon=(pos:complement(1244259..1244261));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05515;product=tRNA-Thr CP098604.1 Genbank gene 1244328 1244401 . - . ID=gene-NDY25_05520;Name=NDY25_05520;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05520 CP098604.1 tRNAscan-SE tRNA 1244328 1244401 . - . ID=rna-NDY25_05520;Parent=gene-NDY25_05520;anticodon=(pos:complement(1244367..1244369));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05520;product=tRNA-Gly CP098604.1 tRNAscan-SE exon 1244328 1244401 . - . ID=exon-NDY25_05520-1;Parent=rna-NDY25_05520;anticodon=(pos:complement(1244367..1244369));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05520;product=tRNA-Gly CP098604.1 Genbank gene 1244431 1244516 . - . ID=gene-NDY25_05525;Name=NDY25_05525;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05525 CP098604.1 tRNAscan-SE tRNA 1244431 1244516 . - . ID=rna-NDY25_05525;Parent=gene-NDY25_05525;anticodon=(pos:complement(1244480..1244482));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05525;product=tRNA-Tyr CP098604.1 tRNAscan-SE exon 1244431 1244516 . - . ID=exon-NDY25_05525-1;Parent=rna-NDY25_05525;anticodon=(pos:complement(1244480..1244482));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05525;product=tRNA-Tyr CP098604.1 Genbank gene 1244670 1245761 . - . ID=gene-NDY25_05530;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=NDY25_05530 CP098604.1 Protein Homology CDS 1244670 1245761 . - 0 ID=cds-UUF03455.1;Parent=gene-NDY25_05530;Dbxref=NCBI_GP:UUF03455.1;Name=UUF03455.1;Ontology_term=GO:0005525;gbkey=CDS;gene=ychF;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811726.1;locus_tag=NDY25_05530;product=redox-regulated ATPase YchF;protein_id=UUF03455.1;transl_table=11 CP098604.1 Genbank gene 1245836 1246420 . - . ID=gene-NDY25_05535;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=NDY25_05535 CP098604.1 Protein Homology CDS 1245836 1246420 . - 0 ID=cds-UUF03456.1;Parent=gene-NDY25_05535;Dbxref=NCBI_GP:UUF03456.1;Name=UUF03456.1;Ontology_term=GO:0006412,GO:0004045;gbkey=CDS;gene=pth;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968854.1;locus_tag=NDY25_05535;product=aminoacyl-tRNA hydrolase;protein_id=UUF03456.1;transl_table=11 CP098604.1 Genbank gene 1246472 1247107 . - . ID=gene-NDY25_05540;Name=NDY25_05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05540 CP098604.1 Protein Homology CDS 1246472 1247107 . - 0 ID=cds-UUF03457.1;Parent=gene-NDY25_05540;Dbxref=NCBI_GP:UUF03457.1;Name=UUF03457.1;Ontology_term=GO:0006412,GO:0003735,GO:0008097;gbkey=CDS;go_function=structural constituent of ribosome|0003735||IEA,5S rRNA binding|0008097||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486759.1;locus_tag=NDY25_05540;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=UUF03457.1;transl_table=11 CP098604.1 Genbank gene 1247217 1248176 . - . ID=gene-NDY25_05545;Name=NDY25_05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05545 CP098604.1 Protein Homology CDS 1247217 1248176 . - 0 ID=cds-UUF03458.1;Parent=gene-NDY25_05545;Dbxref=NCBI_GP:UUF03458.1;Name=UUF03458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486761.1;locus_tag=NDY25_05545;product=ribose-phosphate diphosphokinase;protein_id=UUF03458.1;transl_table=11 CP098604.1 Genbank gene 1248334 1248410 . - . ID=gene-NDY25_05550;Name=NDY25_05550;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_05550 CP098604.1 tRNAscan-SE tRNA 1248334 1248410 . - . ID=rna-NDY25_05550;Parent=gene-NDY25_05550;anticodon=(pos:complement(1248374..1248376));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05550;product=tRNA-Gln CP098604.1 tRNAscan-SE exon 1248334 1248410 . - . ID=exon-NDY25_05550-1;Parent=rna-NDY25_05550;anticodon=(pos:complement(1248374..1248376));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_05550;product=tRNA-Gln CP098604.1 Genbank gene 1248414 1249301 . - . ID=gene-NDY25_05555;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=NDY25_05555 CP098604.1 Protein Homology CDS 1248414 1249301 . - 0 ID=cds-UUF03459.1;Parent=gene-NDY25_05555;Dbxref=NCBI_GP:UUF03459.1;Name=UUF03459.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036107.1;locus_tag=NDY25_05555;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=UUF03459.1;transl_table=11 CP098604.1 Genbank gene 1249283 1249939 . - . ID=gene-NDY25_05560;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=NDY25_05560 CP098604.1 Protein Homology CDS 1249283 1249939 . - 0 ID=cds-UUF03460.1;Parent=gene-NDY25_05560;Dbxref=NCBI_GP:UUF03460.1;Name=UUF03460.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolB;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172004.1;locus_tag=NDY25_05560;product=lipoprotein insertase outer membrane protein LolB;protein_id=UUF03460.1;transl_table=11 CP098604.1 Genbank gene 1249936 1251624 . - . ID=gene-NDY25_05565;Name=NDY25_05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05565 CP098604.1 Protein Homology CDS 1249936 1251624 . - 0 ID=cds-UUF03461.1;Parent=gene-NDY25_05565;Dbxref=NCBI_GP:UUF03461.1;Name=UUF03461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972526.1;locus_tag=NDY25_05565;product=tetratricopeptide repeat protein;protein_id=UUF03461.1;transl_table=11 CP098604.1 Genbank gene 1251690 1252988 . + . ID=gene-NDY25_05570;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=NDY25_05570 CP098604.1 Protein Homology CDS 1251690 1252988 . + 0 ID=cds-UUF03462.1;Parent=gene-NDY25_05570;Dbxref=NCBI_GP:UUF03462.1;Name=UUF03462.1;Ontology_term=GO:0006779,GO:0008883,GO:0005737;gbkey=CDS;gene=hemA;go_component=cytoplasm|0005737||IEA;go_function=glutamyl-tRNA reductase activity|0008883||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450610.1;locus_tag=NDY25_05570;product=glutamyl-tRNA reductase;protein_id=UUF03462.1;transl_table=11 CP098604.1 Genbank gene 1252966 1254051 . + . ID=gene-NDY25_05575;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=NDY25_05575 CP098604.1 Protein Homology CDS 1252966 1254051 . + 0 ID=cds-UUF03463.1;Parent=gene-NDY25_05575;Dbxref=NCBI_GP:UUF03463.1;Name=UUF03463.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300176.1;locus_tag=NDY25_05575;product=peptide chain release factor 1;protein_id=UUF03463.1;transl_table=11 CP098604.1 Genbank gene 1254048 1255754 . + . ID=gene-NDY25_05580;Name=NDY25_05580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05580 CP098604.1 Protein Homology CDS 1254048 1255754 . + 0 ID=cds-UUF03464.1;Parent=gene-NDY25_05580;Dbxref=NCBI_GP:UUF03464.1;Name=UUF03464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118468.1;locus_tag=NDY25_05580;product=tetratricopeptide repeat protein;protein_id=UUF03464.1;transl_table=11 CP098604.1 Genbank gene 1256329 1256847 . + . ID=gene-NDY25_05585;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;locus_tag=NDY25_05585 CP098604.1 Protein Homology CDS 1256329 1256847 . + 0 ID=cds-UUF03465.1;Parent=gene-NDY25_05585;Dbxref=NCBI_GP:UUF03465.1;Name=UUF03465.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaB;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346528.1;locus_tag=NDY25_05585;product=molybdenum cofactor biosynthesis protein B;protein_id=UUF03465.1;transl_table=11 CP098604.1 Genbank gene 1256879 1257661 . + . ID=gene-NDY25_05590;Name=ppk2;gbkey=Gene;gene=ppk2;gene_biotype=protein_coding;locus_tag=NDY25_05590 CP098604.1 Protein Homology CDS 1256879 1257661 . + 0 ID=cds-UUF03466.1;Parent=gene-NDY25_05590;Dbxref=NCBI_GP:UUF03466.1;Name=UUF03466.1;Ontology_term=GO:0006793,GO:0008976,GO:0005575;gbkey=CDS;gene=ppk2;go_component=cellular_component|0005575||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=phosphorus metabolic process|0006793||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965859.1;locus_tag=NDY25_05590;product=polyphosphate kinase 2;protein_id=UUF03466.1;transl_table=11 CP098604.1 Genbank gene 1257643 1258875 . - . ID=gene-NDY25_05595;Name=NDY25_05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05595 CP098604.1 Protein Homology CDS 1257643 1258875 . - 0 ID=cds-UUF03467.1;Parent=gene-NDY25_05595;Dbxref=NCBI_GP:UUF03467.1;Name=UUF03467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925993.1;locus_tag=NDY25_05595;product=hypothetical protein;protein_id=UUF03467.1;transl_table=11 CP098604.1 Genbank gene 1258961 1259227 . - . ID=gene-NDY25_05600;Name=NDY25_05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05600 CP098604.1 Protein Homology CDS 1258961 1259227 . - 0 ID=cds-UUF03468.1;Parent=gene-NDY25_05600;Dbxref=NCBI_GP:UUF03468.1;Name=UUF03468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112879.1;locus_tag=NDY25_05600;product=acylphosphatase;protein_id=UUF03468.1;transl_table=11 CP098604.1 Genbank gene 1259227 1259838 . - . ID=gene-NDY25_05605;Name=NDY25_05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05605 CP098604.1 Protein Homology CDS 1259227 1259838 . - 0 ID=cds-UUF03469.1;Parent=gene-NDY25_05605;Dbxref=NCBI_GP:UUF03469.1;Name=UUF03469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346527.1;locus_tag=NDY25_05605;product=TlpA family protein disulfide reductase;protein_id=UUF03469.1;transl_table=11 CP098604.1 Genbank gene 1259835 1261112 . - . ID=gene-NDY25_05610;Name=NDY25_05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05610 CP098604.1 Protein Homology CDS 1259835 1261112 . - 0 ID=cds-UUF03470.1;Parent=gene-NDY25_05610;Dbxref=NCBI_GP:UUF03470.1;Name=UUF03470.1;Ontology_term=GO:0008150,GO:0003674,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036096.1;locus_tag=NDY25_05610;product=YihY family inner membrane protein;protein_id=UUF03470.1;transl_table=11 CP098604.1 Genbank gene 1261224 1261820 . + . ID=gene-NDY25_05615;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=NDY25_05615 CP098604.1 Protein Homology CDS 1261224 1261820 . + 0 ID=cds-UUF03471.1;Parent=gene-NDY25_05615;Dbxref=NCBI_GP:UUF03471.1;Name=UUF03471.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367335.1;locus_tag=NDY25_05615;product=NAD(P)H:quinone oxidoreductase;protein_id=UUF03471.1;transl_table=11 CP098604.1 Genbank gene 1261817 1262161 . + . ID=gene-NDY25_05620;Name=NDY25_05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05620 CP098604.1 Protein Homology CDS 1261817 1262161 . + 0 ID=cds-UUF03472.1;Parent=gene-NDY25_05620;Dbxref=NCBI_GP:UUF03472.1;Name=UUF03472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156951.1;locus_tag=NDY25_05620;product=DUF2069 domain-containing protein;protein_id=UUF03472.1;transl_table=11 CP098604.1 Genbank gene 1262317 1262802 . + . ID=gene-NDY25_05625;Name=NDY25_05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05625 CP098604.1 Protein Homology CDS 1262317 1262802 . + 0 ID=cds-UUF03473.1;Parent=gene-NDY25_05625;Dbxref=NCBI_GP:UUF03473.1;Name=UUF03473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488754.1;locus_tag=NDY25_05625;product=asparaginase domain-containing protein;protein_id=UUF03473.1;transl_table=11 CP098604.1 Genbank gene 1262807 1263280 . + . ID=gene-NDY25_05630;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=NDY25_05630 CP098604.1 Protein Homology CDS 1262807 1263280 . + 0 ID=cds-UUF03474.1;Parent=gene-NDY25_05630;Dbxref=NCBI_GP:UUF03474.1;Name=UUF03474.1;Ontology_term=GO:0043039,GO:0002161;gbkey=CDS;gene=ybaK;go_function=aminoacyl-tRNA editing activity|0002161||IEA;go_process=tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988832.1;locus_tag=NDY25_05630;product=Cys-tRNA(Pro) deacylase;protein_id=UUF03474.1;transl_table=11 CP098604.1 Genbank gene 1263490 1265187 . - . ID=gene-NDY25_05635;Name=NDY25_05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05635 CP098604.1 Protein Homology CDS 1263490 1265187 . - 0 ID=cds-UUF03475.1;Parent=gene-NDY25_05635;Dbxref=NCBI_GP:UUF03475.1;Name=UUF03475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112882.1;locus_tag=NDY25_05635;product=S8 family serine peptidase;protein_id=UUF03475.1;transl_table=11 CP098604.1 Genbank gene 1265521 1266930 . - . ID=gene-NDY25_05640;Name=NDY25_05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05640 CP098604.1 Protein Homology CDS 1265521 1266930 . - 0 ID=cds-UUF03476.1;Parent=gene-NDY25_05640;Dbxref=NCBI_GP:UUF03476.1;Name=UUF03476.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900706.1;locus_tag=NDY25_05640;product=S8 family serine peptidase;protein_id=UUF03476.1;transl_table=11 CP098604.1 Genbank gene 1267187 1268932 . - . ID=gene-NDY25_05645;Name=NDY25_05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05645 CP098604.1 Protein Homology CDS 1267187 1268932 . - 0 ID=cds-UUF03477.1;Parent=gene-NDY25_05645;Dbxref=NCBI_GP:UUF03477.1;Name=UUF03477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972507.1;locus_tag=NDY25_05645;product=S8 family serine peptidase;protein_id=UUF03477.1;transl_table=11 CP098604.1 Genbank gene 1269241 1270326 . - . ID=gene-NDY25_05650;Name=NDY25_05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05650 CP098604.1 Protein Homology CDS 1269241 1270326 . - 0 ID=cds-UUF03478.1;Parent=gene-NDY25_05650;Dbxref=NCBI_GP:UUF03478.1;Name=UUF03478.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036086.1;locus_tag=NDY25_05650;product=branched-chain amino acid aminotransferase;protein_id=UUF03478.1;transl_table=11 CP098604.1 Genbank gene 1270391 1270945 . - . ID=gene-NDY25_05655;Name=sufT;gbkey=Gene;gene=sufT;gene_biotype=protein_coding;locus_tag=NDY25_05655 CP098604.1 Protein Homology CDS 1270391 1270945 . - 0 ID=cds-UUF03479.1;Parent=gene-NDY25_05655;Dbxref=NCBI_GP:UUF03479.1;Name=UUF03479.1;Ontology_term=GO:0016226,GO:0003674;gbkey=CDS;gene=sufT;go_function=molecular_function|0003674||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488784.1;locus_tag=NDY25_05655;product=putative Fe-S cluster assembly protein SufT;protein_id=UUF03479.1;transl_table=11 CP098604.1 Genbank gene 1271141 1271560 . + . ID=gene-NDY25_05660;Name=NDY25_05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05660 CP098604.1 Protein Homology CDS 1271141 1271560 . + 0 ID=cds-UUF03480.1;Parent=gene-NDY25_05660;Dbxref=NCBI_GP:UUF03480.1;Name=UUF03480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156959.1;locus_tag=NDY25_05660;product=hypothetical protein;protein_id=UUF03480.1;transl_table=11 CP098604.1 Genbank gene 1271806 1272369 . + . ID=gene-NDY25_05665;Name=NDY25_05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05665 CP098604.1 Protein Homology CDS 1271806 1272369 . + 0 ID=cds-UUF03481.1;Parent=gene-NDY25_05665;Dbxref=NCBI_GP:UUF03481.1;Name=UUF03481.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156960.1;locus_tag=NDY25_05665;product=RNA polymerase sigma factor;protein_id=UUF03481.1;transl_table=11 CP098604.1 Genbank gene 1272366 1272710 . + . ID=gene-NDY25_05670;Name=NDY25_05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05670 CP098604.1 Protein Homology CDS 1272366 1272710 . + 0 ID=cds-UUF03482.1;Parent=gene-NDY25_05670;Dbxref=NCBI_GP:UUF03482.1;Name=UUF03482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008578132.1;locus_tag=NDY25_05670;product=hypothetical protein;protein_id=UUF03482.1;transl_table=11 CP098604.1 Genbank gene 1272716 1273210 . + . ID=gene-NDY25_05675;Name=NDY25_05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05675 CP098604.1 Protein Homology CDS 1272716 1273210 . + 0 ID=cds-UUF03483.1;Parent=gene-NDY25_05675;Dbxref=NCBI_GP:UUF03483.1;Name=UUF03483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156962.1;locus_tag=NDY25_05675;product=DUF3106 domain-containing protein;protein_id=UUF03483.1;transl_table=11 CP098604.1 Genbank gene 1273337 1273936 . - . ID=gene-NDY25_05680;Name=NDY25_05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05680 CP098604.1 Protein Homology CDS 1273337 1273936 . - 0 ID=cds-UUF03484.1;Parent=gene-NDY25_05680;Dbxref=NCBI_GP:UUF03484.1;Name=UUF03484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915547.1;locus_tag=NDY25_05680;product=TetR/AcrR family transcriptional regulator;protein_id=UUF03484.1;transl_table=11 CP098604.1 Genbank gene 1274067 1274933 . + . ID=gene-NDY25_05685;Name=NDY25_05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05685 CP098604.1 Protein Homology CDS 1274067 1274933 . + 0 ID=cds-UUF03485.1;Parent=gene-NDY25_05685;Dbxref=NCBI_GP:UUF03485.1;Name=UUF03485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451763.1;locus_tag=NDY25_05685;product=lysophospholipase;protein_id=UUF03485.1;transl_table=11 CP098604.1 Genbank gene 1275120 1277483 . - . ID=gene-NDY25_05690;Name=NDY25_05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05690 CP098604.1 Protein Homology CDS 1275120 1277483 . - 0 ID=cds-UUF03486.1;Parent=gene-NDY25_05690;Dbxref=NCBI_GP:UUF03486.1;Name=UUF03486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915543.1;locus_tag=NDY25_05690;product=DUF1631 domain-containing protein;protein_id=UUF03486.1;transl_table=11 CP098604.1 Genbank gene 1277845 1278420 . + . ID=gene-NDY25_05695;Name=NDY25_05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05695 CP098604.1 Protein Homology CDS 1277845 1278420 . + 0 ID=cds-UUF03487.1;Parent=gene-NDY25_05695;Dbxref=NCBI_GP:UUF03487.1;Name=UUF03487.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915539.1;locus_tag=NDY25_05695;product=nitroreductase;protein_id=UUF03487.1;transl_table=11 CP098604.1 Genbank gene 1278408 1279403 . + . ID=gene-NDY25_05700;Name=NDY25_05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05700 CP098604.1 Protein Homology CDS 1278408 1279403 . + 0 ID=cds-UUF04546.1;Parent=gene-NDY25_05700;Dbxref=NCBI_GP:UUF04546.1;Name=UUF04546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451766.1;locus_tag=NDY25_05700;product=exodeoxyribonuclease IX;protein_id=UUF04546.1;transl_table=11 CP098604.1 Genbank gene 1279400 1279951 . + . ID=gene-NDY25_05705;Name=NDY25_05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05705 CP098604.1 Protein Homology CDS 1279400 1279951 . + 0 ID=cds-UUF03488.1;Parent=gene-NDY25_05705;Dbxref=NCBI_GP:UUF03488.1;Name=UUF03488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472542.1;locus_tag=NDY25_05705;product=NUDIX hydrolase;protein_id=UUF03488.1;transl_table=11 CP098604.1 Genbank gene 1279944 1280750 . + . ID=gene-NDY25_05710;Name=NDY25_05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05710 CP098604.1 Protein Homology CDS 1279944 1280750 . + 0 ID=cds-UUF03489.1;Parent=gene-NDY25_05710;Dbxref=NCBI_GP:UUF03489.1;Name=UUF03489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451768.1;locus_tag=NDY25_05710;product=N-formylglutamate amidohydrolase;protein_id=UUF03489.1;transl_table=11 CP098604.1 Genbank gene 1280909 1281850 . - . ID=gene-NDY25_05715;Name=pip;gbkey=Gene;gene=pip;gene_biotype=protein_coding;locus_tag=NDY25_05715 CP098604.1 Protein Homology CDS 1280909 1281850 . - 0 ID=cds-UUF03490.1;Parent=gene-NDY25_05715;Dbxref=NCBI_GP:UUF03490.1;Name=UUF03490.1;Ontology_term=GO:0030163,GO:0004177;gbkey=CDS;gene=pip;go_function=aminopeptidase activity|0004177||IEA;go_process=protein catabolic process|0030163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156969.1;locus_tag=NDY25_05715;product=prolyl aminopeptidase;protein_id=UUF03490.1;transl_table=11 CP098604.1 Genbank gene 1282082 1282933 . - . ID=gene-NDY25_05720;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=NDY25_05720 CP098604.1 Protein Homology CDS 1282082 1282933 . - 0 ID=cds-UUF03491.1;Parent=gene-NDY25_05720;Dbxref=NCBI_GP:UUF03491.1;Name=UUF03491.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036071.1;locus_tag=NDY25_05720;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=UUF03491.1;transl_table=11 CP098604.1 Genbank gene 1283135 1283698 . + . ID=gene-NDY25_05725;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=NDY25_05725 CP098604.1 Protein Homology CDS 1283135 1283698 . + 0 ID=cds-UUF03492.1;Parent=gene-NDY25_05725;Dbxref=NCBI_GP:UUF03492.1;Name=UUF03492.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=alkylhydroperoxide reductase activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114658.1;locus_tag=NDY25_05725;product=alkyl hydroperoxide reductase subunit C;protein_id=UUF03492.1;transl_table=11 CP098604.1 Genbank gene 1283917 1285509 . + . ID=gene-NDY25_05730;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=NDY25_05730 CP098604.1 Protein Homology CDS 1283917 1285509 . + 0 ID=cds-UUF03493.1;Parent=gene-NDY25_05730;Dbxref=NCBI_GP:UUF03493.1;Name=UUF03493.1;Ontology_term=GO:0006805,GO:0009398,GO:0016668;gbkey=CDS;gene=ahpF;go_function=oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD(P) as acceptor|0016668||IEA;go_process=xenobiotic metabolic process|0006805||IEA,FMN biosynthetic process|0009398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488827.1;locus_tag=NDY25_05730;product=alkyl hydroperoxide reductase subunit F;protein_id=UUF03493.1;transl_table=11 CP098604.1 Genbank pseudogene 1285600 1286540 . + . ID=gene-NDY25_05735;Name=NDY25_05735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_05735;pseudo=true CP098604.1 Protein Homology CDS 1285600 1286540 . + 0 ID=cds-NDY25_05735;Parent=gene-NDY25_05735;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811807.1;locus_tag=NDY25_05735;product=LysR substrate-binding domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1286951 1287418 . + . ID=gene-NDY25_05740;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=NDY25_05740 CP098604.1 Protein Homology CDS 1286951 1287418 . + 0 ID=cds-UUF03494.1;Parent=gene-NDY25_05740;Dbxref=NCBI_GP:UUF03494.1;Name=UUF03494.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=rnk;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription%2C elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300210.1;locus_tag=NDY25_05740;product=nucleoside diphosphate kinase regulator;protein_id=UUF03494.1;transl_table=11 CP098604.1 Genbank gene 1287486 1288454 . + . ID=gene-NDY25_05745;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=NDY25_05745 CP098604.1 Protein Homology CDS 1287486 1288454 . + 0 ID=cds-UUF03495.1;Parent=gene-NDY25_05745;Dbxref=NCBI_GP:UUF03495.1;Name=UUF03495.1;Ontology_term=GO:0006098,GO:0004801;gbkey=CDS;gene=tal;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089458.1;locus_tag=NDY25_05745;product=transaldolase;protein_id=UUF03495.1;transl_table=11 CP098604.1 Genbank pseudogene 1288612 1289180 . + . ID=gene-NDY25_05750;Name=NDY25_05750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_05750;pseudo=true CP098604.1 Protein Homology CDS 1288612 1289180 . + 0 ID=cds-NDY25_05750;Parent=gene-NDY25_05750;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156974.1;locus_tag=NDY25_05750;product=glutamine amidotransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1289443 1290093 . - . ID=gene-NDY25_05755;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=NDY25_05755 CP098604.1 Protein Homology CDS 1289443 1290093 . - 0 ID=cds-UUF03496.1;Parent=gene-NDY25_05755;Dbxref=NCBI_GP:UUF03496.1;Name=UUF03496.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089456.1;locus_tag=NDY25_05755;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=UUF03496.1;transl_table=11 CP098604.1 Genbank gene 1290177 1290692 . - . ID=gene-NDY25_05760;Name=NDY25_05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05760 CP098604.1 Protein Homology CDS 1290177 1290692 . - 0 ID=cds-UUF03497.1;Parent=gene-NDY25_05760;Dbxref=NCBI_GP:UUF03497.1;Name=UUF03497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451408.1;locus_tag=NDY25_05760;product=SgcJ/EcaC family oxidoreductase;protein_id=UUF03497.1;transl_table=11 CP098604.1 Genbank gene 1290817 1291524 . + . ID=gene-NDY25_05765;Name=NDY25_05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05765 CP098604.1 Protein Homology CDS 1290817 1291524 . + 0 ID=cds-UUF03498.1;Parent=gene-NDY25_05765;Dbxref=NCBI_GP:UUF03498.1;Name=UUF03498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994157.1;locus_tag=NDY25_05765;product=response regulator transcription factor;protein_id=UUF03498.1;transl_table=11 CP098604.1 Genbank gene 1291521 1293431 . + . ID=gene-NDY25_05770;Name=NDY25_05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05770 CP098604.1 Protein Homology CDS 1291521 1293431 . + 0 ID=cds-UUF03499.1;Parent=gene-NDY25_05770;Dbxref=NCBI_GP:UUF03499.1;Name=UUF03499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900734.1;locus_tag=NDY25_05770;product=ATP-binding protein;protein_id=UUF03499.1;transl_table=11 CP098604.1 Genbank gene 1293428 1293892 . + . ID=gene-NDY25_05775;Name=NDY25_05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05775 CP098604.1 Protein Homology CDS 1293428 1293892 . + 0 ID=cds-UUF03500.1;Parent=gene-NDY25_05775;Dbxref=NCBI_GP:UUF03500.1;Name=UUF03500.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367413.1;locus_tag=NDY25_05775;product=response regulator;protein_id=UUF03500.1;transl_table=11 CP098604.1 Genbank pseudogene 1293973 1294038 . + . ID=gene-NDY25_05780;Name=NDY25_05780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_05780;pseudo=true CP098604.1 Protein Homology CDS 1293973 1294038 . + 0 ID=cds-NDY25_05780;Parent=gene-NDY25_05780;Note=internal stop%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367413.1;locus_tag=NDY25_05780;product=response regulator;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1294398 1294628 . - . ID=gene-NDY25_05785;Name=NDY25_05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05785 CP098604.1 Protein Homology CDS 1294398 1294628 . - 0 ID=cds-UUF03501.1;Parent=gene-NDY25_05785;Dbxref=NCBI_GP:UUF03501.1;Name=UUF03501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237927.1;locus_tag=NDY25_05785;product=DUF2007 domain-containing protein;protein_id=UUF03501.1;transl_table=11 CP098604.1 Genbank gene 1294631 1295272 . - . ID=gene-NDY25_05790;Name=NDY25_05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05790 CP098604.1 Protein Homology CDS 1294631 1295272 . - 0 ID=cds-UUF03502.1;Parent=gene-NDY25_05790;Dbxref=NCBI_GP:UUF03502.1;Name=UUF03502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449567.1;locus_tag=NDY25_05790;product=glutathione S-transferase family protein;protein_id=UUF03502.1;transl_table=11 CP098604.1 Genbank gene 1295518 1297257 . + . ID=gene-NDY25_05795;Name=NDY25_05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05795 CP098604.1 Protein Homology CDS 1295518 1297257 . + 0 ID=cds-UUF03503.1;Parent=gene-NDY25_05795;Dbxref=NCBI_GP:UUF03503.1;Name=UUF03503.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449568.1;locus_tag=NDY25_05795;product=glutamine--tRNA ligase/YqeY domain fusion protein;protein_id=UUF03503.1;transl_table=11 CP098604.1 Genbank gene 1297485 1298414 . + . ID=gene-NDY25_05800;Name=NDY25_05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05800 CP098604.1 Protein Homology CDS 1297485 1298414 . + 0 ID=cds-UUF03504.1;Parent=gene-NDY25_05800;Dbxref=NCBI_GP:UUF03504.1;Name=UUF03504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965281.1;locus_tag=NDY25_05800;product=DMT family transporter;protein_id=UUF03504.1;transl_table=11 CP098604.1 Genbank gene 1298475 1298726 . + . ID=gene-NDY25_05805;Name=NDY25_05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05805 CP098604.1 GeneMarkS-2+ CDS 1298475 1298726 . + 0 ID=cds-UUF03505.1;Parent=gene-NDY25_05805;Dbxref=NCBI_GP:UUF03505.1;Name=UUF03505.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_05805;product=hypothetical protein;protein_id=UUF03505.1;transl_table=11 CP098604.1 Genbank gene 1298902 1299318 . + . ID=gene-NDY25_05810;Name=NDY25_05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05810 CP098604.1 Protein Homology CDS 1298902 1299318 . + 0 ID=cds-UUF03506.1;Parent=gene-NDY25_05810;Dbxref=NCBI_GP:UUF03506.1;Name=UUF03506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112744.1;locus_tag=NDY25_05810;product=hypothetical protein;protein_id=UUF03506.1;transl_table=11 CP098604.1 Genbank gene 1299318 1299878 . + . ID=gene-NDY25_05815;Name=NDY25_05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05815 CP098604.1 Protein Homology CDS 1299318 1299878 . + 0 ID=cds-UUF03507.1;Parent=gene-NDY25_05815;Dbxref=NCBI_GP:UUF03507.1;Name=UUF03507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572602.1;locus_tag=NDY25_05815;product=nucleoside deaminase;protein_id=UUF03507.1;transl_table=11 CP098604.1 Genbank gene 1299915 1300958 . + . ID=gene-NDY25_05820;Name=rlmM;gbkey=Gene;gene=rlmM;gene_biotype=protein_coding;locus_tag=NDY25_05820 CP098604.1 Protein Homology CDS 1299915 1300958 . + 0 ID=cds-UUF03508.1;Parent=gene-NDY25_05820;Dbxref=NCBI_GP:UUF03508.1;Name=UUF03508.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmM;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260144.1;locus_tag=NDY25_05820;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;protein_id=UUF03508.1;transl_table=11 CP098604.1 Genbank gene 1301229 1302338 . - . ID=gene-NDY25_05825;Name=NDY25_05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05825 CP098604.1 Protein Homology CDS 1301229 1302338 . - 0 ID=cds-UUF03509.1;Parent=gene-NDY25_05825;Dbxref=NCBI_GP:UUF03509.1;Name=UUF03509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300569.1;locus_tag=NDY25_05825;product=Gfo/Idh/MocA family oxidoreductase;protein_id=UUF03509.1;transl_table=11 CP098604.1 Genbank gene 1302602 1303504 . + . ID=gene-NDY25_05830;Name=NDY25_05830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05830 CP098604.1 Protein Homology CDS 1302602 1303504 . + 0 ID=cds-UUF03510.1;Parent=gene-NDY25_05830;Dbxref=NCBI_GP:UUF03510.1;Name=UUF03510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811823.1;locus_tag=NDY25_05830;product=SMP-30/gluconolactonase/LRE family protein;protein_id=UUF03510.1;transl_table=11 CP098604.1 Genbank gene 1303587 1304309 . + . ID=gene-NDY25_05835;Name=NDY25_05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05835 CP098604.1 Protein Homology CDS 1303587 1304309 . + 0 ID=cds-UUF03511.1;Parent=gene-NDY25_05835;Dbxref=NCBI_GP:UUF03511.1;Name=UUF03511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449576.1;locus_tag=NDY25_05835;product=hypothetical protein;protein_id=UUF03511.1;transl_table=11 CP098604.1 Genbank gene 1304454 1304852 . + . ID=gene-NDY25_05840;Name=NDY25_05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05840 CP098604.1 Protein Homology CDS 1304454 1304852 . + 0 ID=cds-UUF03512.1;Parent=gene-NDY25_05840;Dbxref=NCBI_GP:UUF03512.1;Name=UUF03512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449577.1;locus_tag=NDY25_05840;product=EF-hand domain-containing protein;protein_id=UUF03512.1;transl_table=11 CP098604.1 Genbank gene 1305457 1305930 . + . ID=gene-NDY25_05845;Name=NDY25_05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05845 CP098604.1 Protein Homology CDS 1305457 1305930 . + 0 ID=cds-UUF03513.1;Parent=gene-NDY25_05845;Dbxref=NCBI_GP:UUF03513.1;Name=UUF03513.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157297.1;locus_tag=NDY25_05845;product=MarR family transcriptional regulator;protein_id=UUF03513.1;transl_table=11 CP098604.1 Genbank gene 1305965 1306792 . + . ID=gene-NDY25_05850;Name=NDY25_05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05850 CP098604.1 Protein Homology CDS 1305965 1306792 . + 0 ID=cds-UUF03514.1;Parent=gene-NDY25_05850;Dbxref=NCBI_GP:UUF03514.1;Name=UUF03514.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572593.1;locus_tag=NDY25_05850;product=p-hydroxycinnamoyl CoA hydratase/lyase;protein_id=UUF03514.1;transl_table=11 CP098604.1 Genbank gene 1306876 1308345 . + . ID=gene-NDY25_05855;Name=NDY25_05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05855 CP098604.1 Protein Homology CDS 1306876 1308345 . + 0 ID=cds-UUF03515.1;Parent=gene-NDY25_05855;Dbxref=NCBI_GP:UUF03515.1;Name=UUF03515.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014077148.1;locus_tag=NDY25_05855;product=aldehyde dehydrogenase;protein_id=UUF03515.1;transl_table=11 CP098604.1 Genbank gene 1308493 1309971 . + . ID=gene-NDY25_05860;Name=NDY25_05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05860 CP098604.1 Protein Homology CDS 1308493 1309971 . + 0 ID=cds-UUF03516.1;Parent=gene-NDY25_05860;Dbxref=NCBI_GP:UUF03516.1;Name=UUF03516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036043.1;locus_tag=NDY25_05860;product=AMP-binding protein;protein_id=UUF03516.1;transl_table=11 CP098604.1 Genbank gene 1310167 1311168 . - . ID=gene-NDY25_05865;Name=NDY25_05865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05865 CP098604.1 Protein Homology CDS 1310167 1311168 . - 0 ID=cds-UUF03517.1;Parent=gene-NDY25_05865;Dbxref=NCBI_GP:UUF03517.1;Name=UUF03517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970087.1;locus_tag=NDY25_05865;product=LysR substrate-binding domain-containing protein;protein_id=UUF03517.1;transl_table=11 CP098604.1 Genbank gene 1311235 1311594 . - . ID=gene-NDY25_05870;Name=NDY25_05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05870 CP098604.1 Protein Homology CDS 1311235 1311594 . - 0 ID=cds-UUF03518.1;Parent=gene-NDY25_05870;Dbxref=NCBI_GP:UUF03518.1;Name=UUF03518.1;Note=extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols%3B part of the bacterial aromatic compound degradation pathway;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157300.1;locus_tag=NDY25_05870;product=protocatechuate 3%2C4-dioxygenase;protein_id=UUF03518.1;transl_table=11 CP098604.1 Genbank gene 1311605 1312501 . - . ID=gene-NDY25_05875;Name=NDY25_05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05875 CP098604.1 Protein Homology CDS 1311605 1312501 . - 0 ID=cds-UUF03519.1;Parent=gene-NDY25_05875;Dbxref=NCBI_GP:UUF03519.1;Name=UUF03519.1;Ontology_term=GO:0006725,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=cellular aromatic compound metabolic process|0006725||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157301.1;locus_tag=NDY25_05875;product=gallate dioxygenase;protein_id=UUF03519.1;transl_table=11 CP098604.1 Genbank gene 1312737 1313411 . + . ID=gene-NDY25_05880;Name=NDY25_05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05880 CP098604.1 Protein Homology CDS 1312737 1313411 . + 0 ID=cds-UUF03520.1;Parent=gene-NDY25_05880;Dbxref=NCBI_GP:UUF03520.1;Name=UUF03520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157302.1;locus_tag=NDY25_05880;product=GntR family transcriptional regulator;protein_id=UUF03520.1;transl_table=11 CP098604.1 Genbank gene 1313587 1314534 . - . ID=gene-NDY25_05885;Name=NDY25_05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05885 CP098604.1 Protein Homology CDS 1313587 1314534 . - 0 ID=cds-UUF03521.1;Parent=gene-NDY25_05885;Dbxref=NCBI_GP:UUF03521.1;Name=UUF03521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449027.1;locus_tag=NDY25_05885;product=transporter;protein_id=UUF03521.1;transl_table=11 CP098604.1 Genbank gene 1314730 1315161 . - . ID=gene-NDY25_05890;Name=NDY25_05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05890 CP098604.1 Protein Homology CDS 1314730 1315161 . - 0 ID=cds-UUF03522.1;Parent=gene-NDY25_05890;Dbxref=NCBI_GP:UUF03522.1;Name=UUF03522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036037.1;locus_tag=NDY25_05890;product=nuclear transport factor 2 family protein;protein_id=UUF03522.1;transl_table=11 CP098604.1 Genbank gene 1315266 1315985 . - . ID=gene-NDY25_05895;Name=NDY25_05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05895 CP098604.1 Protein Homology CDS 1315266 1315985 . - 0 ID=cds-UUF03523.1;Parent=gene-NDY25_05895;Dbxref=NCBI_GP:UUF03523.1;Name=UUF03523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506745.1;locus_tag=NDY25_05895;product=alpha/beta hydrolase;protein_id=UUF03523.1;transl_table=11 CP098604.1 Genbank gene 1316088 1317269 . - . ID=gene-NDY25_05900;Name=NDY25_05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05900 CP098604.1 Protein Homology CDS 1316088 1317269 . - 0 ID=cds-UUF03524.1;Parent=gene-NDY25_05900;Dbxref=NCBI_GP:UUF03524.1;Name=UUF03524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157306.1;locus_tag=NDY25_05900;product=UbiH/UbiF family hydroxylase;protein_id=UUF03524.1;transl_table=11 CP098604.1 Genbank gene 1317266 1318474 . - . ID=gene-NDY25_05905;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=NDY25_05905 CP098604.1 Protein Homology CDS 1317266 1318474 . - 0 ID=cds-UUF03525.1;Parent=gene-NDY25_05905;Dbxref=NCBI_GP:UUF03525.1;Name=UUF03525.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171680.1;locus_tag=NDY25_05905;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=UUF03525.1;transl_table=11 CP098604.1 Genbank gene 1318604 1319182 . + . ID=gene-NDY25_05910;Name=NDY25_05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05910 CP098604.1 Protein Homology CDS 1318604 1319182 . + 0 ID=cds-UUF03526.1;Parent=gene-NDY25_05910;Dbxref=NCBI_GP:UUF03526.1;Name=UUF03526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381619.1;locus_tag=NDY25_05910;product=hypothetical protein;protein_id=UUF03526.1;transl_table=11 CP098604.1 Genbank gene 1319184 1319741 . + . ID=gene-NDY25_05915;Name=NDY25_05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05915 CP098604.1 Protein Homology CDS 1319184 1319741 . + 0 ID=cds-UUF03527.1;Parent=gene-NDY25_05915;Dbxref=NCBI_GP:UUF03527.1;Name=UUF03527.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;go_function=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502064.1;locus_tag=NDY25_05915;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=UUF03527.1;transl_table=11 CP098604.1 Genbank gene 1319779 1320687 . + . ID=gene-NDY25_05920;Name=NDY25_05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05920 CP098604.1 Protein Homology CDS 1319779 1320687 . + 0 ID=cds-UUF03528.1;Parent=gene-NDY25_05920;Dbxref=NCBI_GP:UUF03528.1;Name=UUF03528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900762.1;locus_tag=NDY25_05920;product=histone deacetylase family protein;protein_id=UUF03528.1;transl_table=11 CP098604.1 Genbank pseudogene 1320803 1323244 . + . ID=gene-NDY25_05925;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=pseudogene;locus_tag=NDY25_05925;pseudo=true CP098604.1 Protein Homology CDS 1320803 1323244 . + 0 ID=cds-NDY25_05925;Parent=gene-NDY25_05925;Note=internal stop;gbkey=CDS;gene=lptD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157311.1;locus_tag=NDY25_05925;product=LPS-assembly protein LptD;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1323241 1324641 . + . ID=gene-NDY25_05930;Name=NDY25_05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05930 CP098604.1 Protein Homology CDS 1323241 1324641 . + 0 ID=cds-UUF03529.1;Parent=gene-NDY25_05930;Dbxref=NCBI_GP:UUF03529.1;Name=UUF03529.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157312.1;locus_tag=NDY25_05930;product=peptidylprolyl isomerase;protein_id=UUF03529.1;transl_table=11 CP098604.1 Genbank gene 1324646 1325614 . + . ID=gene-NDY25_05935;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=NDY25_05935 CP098604.1 Protein Homology CDS 1324646 1325614 . + 0 ID=cds-UUF03530.1;Parent=gene-NDY25_05935;Dbxref=NCBI_GP:UUF03530.1;Name=UUF03530.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900765.1;locus_tag=NDY25_05935;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=UUF03530.1;transl_table=11 CP098604.1 Genbank gene 1325720 1326508 . + . ID=gene-NDY25_05940;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=NDY25_05940 CP098604.1 Protein Homology CDS 1325720 1326508 . + 0 ID=cds-UUF03531.1;Parent=gene-NDY25_05940;Dbxref=NCBI_GP:UUF03531.1;Name=UUF03531.1;Ontology_term=GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260168.1;locus_tag=NDY25_05940;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=UUF03531.1;transl_table=11 CP098604.1 Genbank gene 1326545 1326928 . + . ID=gene-NDY25_05945;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=NDY25_05945 CP098604.1 Protein Homology CDS 1326545 1326928 . + 0 ID=cds-UUF03532.1;Parent=gene-NDY25_05945;Dbxref=NCBI_GP:UUF03532.1;Name=UUF03532.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451488.1;locus_tag=NDY25_05945;product=Co2+/Mg2+ efflux protein ApaG;protein_id=UUF03532.1;transl_table=11 CP098604.1 Genbank gene 1326957 1327913 . + . ID=gene-NDY25_05950;Name=NDY25_05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05950 CP098604.1 Protein Homology CDS 1326957 1327913 . + 0 ID=cds-UUF03533.1;Parent=gene-NDY25_05950;Dbxref=NCBI_GP:UUF03533.1;Name=UUF03533.1;Ontology_term=GO:0008803;gbkey=CDS;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451487.1;locus_tag=NDY25_05950;product=symmetrical bis(5'-nucleosyl)-tetraphosphatase;protein_id=UUF03533.1;transl_table=11 CP098604.1 Genbank gene 1328514 1329077 . + . ID=gene-NDY25_05955;Name=msuE;gbkey=Gene;gene=msuE;gene_biotype=protein_coding;locus_tag=NDY25_05955 CP098604.1 Protein Homology CDS 1328514 1329077 . + 0 ID=cds-UUF03534.1;Parent=gene-NDY25_05955;Dbxref=NCBI_GP:UUF03534.1;Name=UUF03534.1;Ontology_term=GO:0016491;gbkey=CDS;gene=msuE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850163.1;locus_tag=NDY25_05955;product=FMN reductase;protein_id=UUF03534.1;transl_table=11 CP098604.1 Genbank gene 1329343 1330506 . + . ID=gene-NDY25_05960;Name=ssuD;gbkey=Gene;gene=ssuD;gene_biotype=protein_coding;locus_tag=NDY25_05960 CP098604.1 Protein Homology CDS 1329343 1330506 . + 0 ID=cds-UUF03535.1;Parent=gene-NDY25_05960;Dbxref=NCBI_GP:UUF03535.1;Name=UUF03535.1;Ontology_term=GO:0006790,GO:0008726,GO:0010181;gbkey=CDS;gene=ssuD;go_function=alkanesulfonate monooxygenase activity|0008726||IEA,FMN binding|0010181||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965783.1;locus_tag=NDY25_05960;product=FMNH2-dependent alkanesulfonate monooxygenase;protein_id=UUF03535.1;transl_table=11 CP098604.1 Genbank gene 1330518 1331522 . + . ID=gene-NDY25_05965;Name=NDY25_05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05965 CP098604.1 Protein Homology CDS 1330518 1331522 . + 0 ID=cds-UUF03536.1;Parent=gene-NDY25_05965;Dbxref=NCBI_GP:UUF03536.1;Name=UUF03536.1;Ontology_term=GO:0042918,GO:0005488,GO:0042626,GO:0009897,GO:0030288,GO:0043190;gbkey=CDS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=binding|0005488||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=alkanesulfonate transport|0042918||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451484.1;locus_tag=NDY25_05965;product=aliphatic sulfonate ABC transporter substrate-binding protein;protein_id=UUF03536.1;transl_table=11 CP098604.1 Genbank gene 1331531 1332385 . + . ID=gene-NDY25_05970;Name=NDY25_05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05970 CP098604.1 Protein Homology CDS 1331531 1332385 . + 0 ID=cds-UUF03537.1;Parent=gene-NDY25_05970;Dbxref=NCBI_GP:UUF03537.1;Name=UUF03537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972134.1;locus_tag=NDY25_05970;product=ABC transporter permease;protein_id=UUF03537.1;transl_table=11 CP098604.1 Genbank gene 1332382 1333140 . + . ID=gene-NDY25_05975;Name=NDY25_05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05975 CP098604.1 Protein Homology CDS 1332382 1333140 . + 0 ID=cds-UUF03538.1;Parent=gene-NDY25_05975;Dbxref=NCBI_GP:UUF03538.1;Name=UUF03538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850166.1;locus_tag=NDY25_05975;product=ABC transporter ATP-binding protein;protein_id=UUF03538.1;transl_table=11 CP098604.1 Genbank gene 1333409 1334596 . + . ID=gene-NDY25_05980;Name=NDY25_05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05980 CP098604.1 Protein Homology CDS 1333409 1334596 . + 0 ID=cds-UUF03539.1;Parent=gene-NDY25_05980;Dbxref=NCBI_GP:UUF03539.1;Name=UUF03539.1;Ontology_term=GO:0016627,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972130.1;locus_tag=NDY25_05980;product=acyl-CoA dehydrogenase family protein;protein_id=UUF03539.1;transl_table=11 CP098604.1 Genbank gene 1334761 1335255 . - . ID=gene-NDY25_05985;Name=NDY25_05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05985 CP098604.1 Protein Homology CDS 1334761 1335255 . - 0 ID=cds-UUF03540.1;Parent=gene-NDY25_05985;Dbxref=NCBI_GP:UUF03540.1;Name=UUF03540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157316.1;locus_tag=NDY25_05985;product=dihydrofolate reductase;protein_id=UUF03540.1;transl_table=11 CP098604.1 Genbank gene 1335300 1336094 . - . ID=gene-NDY25_05990;Name=NDY25_05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_05990 CP098604.1 Protein Homology CDS 1335300 1336094 . - 0 ID=cds-UUF03541.1;Parent=gene-NDY25_05990;Dbxref=NCBI_GP:UUF03541.1;Name=UUF03541.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260172.1;locus_tag=NDY25_05990;product=thymidylate synthase;protein_id=UUF03541.1;transl_table=11 CP098604.1 Genbank gene 1336091 1336981 . - . ID=gene-NDY25_05995;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=NDY25_05995 CP098604.1 Protein Homology CDS 1336091 1336981 . - 0 ID=cds-UUF03542.1;Parent=gene-NDY25_05995;Dbxref=NCBI_GP:UUF03542.1;Name=UUF03542.1;Ontology_term=GO:0009249,GO:0008961,GO:0016021;gbkey=CDS;gene=lgt;go_component=integral component of membrane|0016021||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451478.1;locus_tag=NDY25_05995;product=prolipoprotein diacylglyceryl transferase;protein_id=UUF03542.1;transl_table=11 CP098604.1 Genbank gene 1337036 1337527 . - . ID=gene-NDY25_06000;Name=NDY25_06000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06000 CP098604.1 Protein Homology CDS 1337036 1337527 . - 0 ID=cds-UUF03543.1;Parent=gene-NDY25_06000;Dbxref=NCBI_GP:UUF03543.1;Name=UUF03543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972126.1;locus_tag=NDY25_06000;product=TPM domain-containing protein;protein_id=UUF03543.1;transl_table=11 CP098604.1 Genbank gene 1337527 1338414 . - . ID=gene-NDY25_06005;Name=NDY25_06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06005 CP098604.1 Protein Homology CDS 1337527 1338414 . - 0 ID=cds-UUF03544.1;Parent=gene-NDY25_06005;Dbxref=NCBI_GP:UUF03544.1;Name=UUF03544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114597.1;locus_tag=NDY25_06005;product=TPM domain-containing protein;protein_id=UUF03544.1;transl_table=11 CP098604.1 Genbank gene 1338709 1339341 . - . ID=gene-NDY25_06010;Name=NDY25_06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06010 CP098604.1 Protein Homology CDS 1338709 1339341 . - 0 ID=cds-UUF03545.1;Parent=gene-NDY25_06010;Dbxref=NCBI_GP:UUF03545.1;Name=UUF03545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381647.1;locus_tag=NDY25_06010;product=LemA family protein;protein_id=UUF03545.1;transl_table=11 CP098604.1 Genbank gene 1339683 1340063 . - . ID=gene-NDY25_06015;Name=NDY25_06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06015 CP098604.1 Protein Homology CDS 1339683 1340063 . - 0 ID=cds-UUF03546.1;Parent=gene-NDY25_06015;Dbxref=NCBI_GP:UUF03546.1;Name=UUF03546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573596.1;locus_tag=NDY25_06015;product=diacylglycerol kinase;protein_id=UUF03546.1;transl_table=11 CP098604.1 Genbank gene 1340382 1341083 . + . ID=gene-NDY25_06020;Name=NDY25_06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06020 CP098604.1 Protein Homology CDS 1340382 1341083 . + 0 ID=cds-UUF03547.1;Parent=gene-NDY25_06020;Dbxref=NCBI_GP:UUF03547.1;Name=UUF03547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157323.1;locus_tag=NDY25_06020;product=SGNH/GDSL hydrolase family protein;protein_id=UUF03547.1;transl_table=11 CP098604.1 Genbank gene 1341115 1342386 . - . ID=gene-NDY25_06025;Name=NDY25_06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06025 CP098604.1 Protein Homology CDS 1341115 1342386 . - 0 ID=cds-UUF03548.1;Parent=gene-NDY25_06025;Dbxref=NCBI_GP:UUF03548.1;Name=UUF03548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900779.1;locus_tag=NDY25_06025;product=HAMP domain-containing histidine kinase;protein_id=UUF03548.1;transl_table=11 CP098604.1 Genbank gene 1342528 1343241 . - . ID=gene-NDY25_06030;Name=NDY25_06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06030 CP098604.1 Protein Homology CDS 1342528 1343241 . - 0 ID=cds-UUF03549.1;Parent=gene-NDY25_06030;Dbxref=NCBI_GP:UUF03549.1;Name=UUF03549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019661106.1;locus_tag=NDY25_06030;product=response regulator transcription factor;protein_id=UUF03549.1;transl_table=11 CP098604.1 Genbank gene 1343333 1344001 . - . ID=gene-NDY25_06035;Name=NDY25_06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06035 CP098604.1 Protein Homology CDS 1343333 1344001 . - 0 ID=cds-UUF03550.1;Parent=gene-NDY25_06035;Dbxref=NCBI_GP:UUF03550.1;Name=UUF03550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005910775.1;locus_tag=NDY25_06035;product=arylesterase;protein_id=UUF03550.1;transl_table=11 CP098604.1 Genbank gene 1344111 1344710 . + . ID=gene-NDY25_06040;Name=NDY25_06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06040 CP098604.1 Protein Homology CDS 1344111 1344710 . + 0 ID=cds-UUF04547.1;Parent=gene-NDY25_06040;Dbxref=NCBI_GP:UUF04547.1;Name=UUF04547.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811879.1;locus_tag=NDY25_06040;product=ATP-binding cassette domain-containing protein;protein_id=UUF04547.1;transl_table=11 CP098604.1 Genbank gene 1344707 1347190 . + . ID=gene-NDY25_06045;Name=NDY25_06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06045 CP098604.1 Protein Homology CDS 1344707 1347190 . + 0 ID=cds-UUF03551.1;Parent=gene-NDY25_06045;Dbxref=NCBI_GP:UUF03551.1;Name=UUF03551.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485158.1;locus_tag=NDY25_06045;product=FtsX-like permease family protein;protein_id=UUF03551.1;transl_table=11 CP098604.1 Genbank gene 1347436 1348353 . + . ID=gene-NDY25_06050;Name=NDY25_06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06050 CP098604.1 Protein Homology CDS 1347436 1348353 . + 0 ID=cds-UUF03552.1;Parent=gene-NDY25_06050;Dbxref=NCBI_GP:UUF03552.1;Name=UUF03552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462887.1;locus_tag=NDY25_06050;product=TauD/TfdA family dioxygenase;protein_id=UUF03552.1;transl_table=11 CP098604.1 Genbank gene 1348439 1349488 . + . ID=gene-NDY25_06055;Name=NDY25_06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06055 CP098604.1 Protein Homology CDS 1348439 1349488 . + 0 ID=cds-UUF03553.1;Parent=gene-NDY25_06055;Dbxref=NCBI_GP:UUF03553.1;Name=UUF03553.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346464.1;locus_tag=NDY25_06055;product=ABC transporter substrate-binding protein;protein_id=UUF03553.1;transl_table=11 CP098604.1 Genbank gene 1349492 1350331 . + . ID=gene-NDY25_06060;Name=NDY25_06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06060 CP098604.1 Protein Homology CDS 1349492 1350331 . + 0 ID=cds-UUF03554.1;Parent=gene-NDY25_06060;Dbxref=NCBI_GP:UUF03554.1;Name=UUF03554.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269992.1;locus_tag=NDY25_06060;product=ABC transporter ATP-binding protein;protein_id=UUF03554.1;transl_table=11 CP098604.1 Genbank gene 1350328 1351212 . + . ID=gene-NDY25_06065;Name=NDY25_06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06065 CP098604.1 Protein Homology CDS 1350328 1351212 . + 0 ID=cds-UUF03555.1;Parent=gene-NDY25_06065;Dbxref=NCBI_GP:UUF03555.1;Name=UUF03555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160361.1;locus_tag=NDY25_06065;product=ABC transporter permease;protein_id=UUF03555.1;transl_table=11 CP098604.1 Genbank gene 1351297 1351650 . + . ID=gene-NDY25_06070;Name=NDY25_06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06070 CP098604.1 Protein Homology CDS 1351297 1351650 . + 0 ID=cds-UUF03556.1;Parent=gene-NDY25_06070;Dbxref=NCBI_GP:UUF03556.1;Name=UUF03556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303348.1;locus_tag=NDY25_06070;product=DMT family protein;protein_id=UUF03556.1;transl_table=11 CP098604.1 Genbank gene 1351745 1352668 . - . ID=gene-NDY25_06075;Name=NDY25_06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06075 CP098604.1 Protein Homology CDS 1351745 1352668 . - 0 ID=cds-UUF03557.1;Parent=gene-NDY25_06075;Dbxref=NCBI_GP:UUF03557.1;Name=UUF03557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162230.1;locus_tag=NDY25_06075;product=hypothetical protein;protein_id=UUF03557.1;transl_table=11 CP098604.1 Genbank gene 1352698 1353330 . - . ID=gene-NDY25_06080;Name=NDY25_06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06080 CP098604.1 Protein Homology CDS 1352698 1353330 . - 0 ID=cds-UUF03558.1;Parent=gene-NDY25_06080;Dbxref=NCBI_GP:UUF03558.1;Name=UUF03558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930913.1;locus_tag=NDY25_06080;product=Hemin transport protein;protein_id=UUF03558.1;transl_table=11 CP098604.1 Genbank gene 1353336 1355567 . - . ID=gene-NDY25_06085;Name=NDY25_06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06085 CP098604.1 Protein Homology CDS 1353336 1355567 . - 0 ID=cds-UUF03559.1;Parent=gene-NDY25_06085;Dbxref=NCBI_GP:UUF03559.1;Name=UUF03559.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171678.1;locus_tag=NDY25_06085;product=TonB-dependent hemoglobin/transferrin/lactoferrin family receptor;protein_id=UUF03559.1;transl_table=11 CP098604.1 Genbank gene 1355842 1356081 . - . ID=gene-NDY25_06090;Name=NDY25_06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06090 CP098604.1 Protein Homology CDS 1355842 1356081 . - 0 ID=cds-UUF04548.1;Parent=gene-NDY25_06090;Dbxref=NCBI_GP:UUF04548.1;Name=UUF04548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269995.1;locus_tag=NDY25_06090;product=hemin uptake protein HemP;protein_id=UUF04548.1;transl_table=11 CP098604.1 Genbank gene 1356273 1357241 . - . ID=gene-NDY25_06095;Name=NDY25_06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06095 CP098604.1 Protein Homology CDS 1356273 1357241 . - 0 ID=cds-UUF03560.1;Parent=gene-NDY25_06095;Dbxref=NCBI_GP:UUF03560.1;Name=UUF03560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930920.1;locus_tag=NDY25_06095;product=aldo/keto reductase;protein_id=UUF03560.1;transl_table=11 CP098604.1 Genbank gene 1357963 1359261 . + . ID=gene-NDY25_06100;Name=NDY25_06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06100 CP098604.1 Protein Homology CDS 1357963 1359261 . + 0 ID=cds-UUF03561.1;Parent=gene-NDY25_06100;Dbxref=NCBI_GP:UUF03561.1;Name=UUF03561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304462.1;locus_tag=NDY25_06100;product=NupC/NupG family nucleoside CNT transporter;protein_id=UUF03561.1;transl_table=11 CP098604.1 Genbank gene 1359340 1360296 . + . ID=gene-NDY25_06105;Name=NDY25_06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06105 CP098604.1 Protein Homology CDS 1359340 1360296 . + 0 ID=cds-UUF03562.1;Parent=gene-NDY25_06105;Dbxref=NCBI_GP:UUF03562.1;Name=UUF03562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451422.1;locus_tag=NDY25_06105;product=ribokinase;protein_id=UUF03562.1;transl_table=11 CP098604.1 Genbank gene 1360896 1361894 . + . ID=gene-NDY25_06110;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=NDY25_06110 CP098604.1 Protein Homology CDS 1360896 1361894 . + 0 ID=cds-UUF03563.1;Parent=gene-NDY25_06110;Dbxref=NCBI_GP:UUF03563.1;Name=UUF03563.1;Ontology_term=GO:0008033,GO:0003824,GO:0016491,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=catalytic activity|0003824||IEA,oxidoreductase activity|0016491||IEA,tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050554.1;locus_tag=NDY25_06110;product=tRNA dihydrouridine synthase DusB;protein_id=UUF03563.1;transl_table=11 CP098604.1 Genbank gene 1361935 1362762 . + . ID=gene-NDY25_06115;Name=NDY25_06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06115 CP098604.1 Protein Homology CDS 1361935 1362762 . + 0 ID=cds-UUF03564.1;Parent=gene-NDY25_06115;Dbxref=NCBI_GP:UUF03564.1;Name=UUF03564.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485197.1;locus_tag=NDY25_06115;product=methyltransferase domain-containing protein;protein_id=UUF03564.1;transl_table=11 CP098604.1 Genbank gene 1362793 1363881 . - . ID=gene-NDY25_06120;Name=NDY25_06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06120 CP098604.1 Protein Homology CDS 1362793 1363881 . - 0 ID=cds-UUF03565.1;Parent=gene-NDY25_06120;Dbxref=NCBI_GP:UUF03565.1;Name=UUF03565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448525.1;locus_tag=NDY25_06120;product=metal-dependent hydrolase;protein_id=UUF03565.1;transl_table=11 CP098604.1 Genbank gene 1364116 1365327 . + . ID=gene-NDY25_06125;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=NDY25_06125 CP098604.1 Protein Homology CDS 1364116 1365327 . + 0 ID=cds-UUF03566.1;Parent=gene-NDY25_06125;Dbxref=NCBI_GP:UUF03566.1;Name=UUF03566.1;Ontology_term=GO:0006556,GO:0004478;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004083625.1;locus_tag=NDY25_06125;product=methionine adenosyltransferase;protein_id=UUF03566.1;transl_table=11 CP098604.1 Genbank gene 1366633 1368012 . - . ID=gene-NDY25_06130;Name=NDY25_06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06130 CP098604.1 Protein Homology CDS 1366633 1368012 . - 0 ID=cds-UUF03567.1;Parent=gene-NDY25_06130;Dbxref=NCBI_GP:UUF03567.1;Name=UUF03567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450147.1;locus_tag=NDY25_06130;product=histidine-type phosphatase;protein_id=UUF03567.1;transl_table=11 CP098604.1 Genbank pseudogene 1368411 1369675 . - . ID=gene-NDY25_06135;Name=NDY25_06135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06135;pseudo=true CP098604.1 Protein Homology CDS 1368411 1369675 . - 0 ID=cds-NDY25_06135;Parent=gene-NDY25_06135;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173984.1;locus_tag=NDY25_06135;product=OmpA family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1370631 1372595 . - . ID=gene-NDY25_06140;Name=NDY25_06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06140 CP098604.1 Protein Homology CDS 1370631 1372595 . - 0 ID=cds-UUF04549.1;Parent=gene-NDY25_06140;Dbxref=NCBI_GP:UUF04549.1;Name=UUF04549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450145.1;locus_tag=NDY25_06140;product=alpha/beta hydrolase;protein_id=UUF04549.1;transl_table=11 CP098604.1 Genbank gene 1372673 1373710 . - . ID=gene-NDY25_06145;Name=NDY25_06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06145 CP098604.1 Protein Homology CDS 1372673 1373710 . - 0 ID=cds-UUF03568.1;Parent=gene-NDY25_06145;Dbxref=NCBI_GP:UUF03568.1;Name=UUF03568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921039.1;locus_tag=NDY25_06145;product=DUF4105 domain-containing protein;protein_id=UUF03568.1;transl_table=11 CP098604.1 Genbank gene 1373707 1374279 . - . ID=gene-NDY25_06150;Name=NDY25_06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06150 CP098604.1 Protein Homology CDS 1373707 1374279 . - 0 ID=cds-UUF03569.1;Parent=gene-NDY25_06150;Dbxref=NCBI_GP:UUF03569.1;Name=UUF03569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485218.1;locus_tag=NDY25_06150;product=TetR/AcrR family transcriptional regulator;protein_id=UUF03569.1;transl_table=11 CP098604.1 Genbank gene 1374425 1377139 . - . ID=gene-NDY25_06155;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=NDY25_06155 CP098604.1 Protein Homology CDS 1374425 1377139 . - 0 ID=cds-UUF03570.1;Parent=gene-NDY25_06155;Dbxref=NCBI_GP:UUF03570.1;Name=UUF03570.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155365.1;locus_tag=NDY25_06155;product=phosphoenolpyruvate carboxylase;protein_id=UUF03570.1;transl_table=11 CP098604.1 Genbank pseudogene 1377575 1380064 . - . ID=gene-NDY25_06160;Name=NDY25_06160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06160;pseudo=true CP098604.1 Protein Homology CDS 1377575 1380064 . - 0 ID=cds-NDY25_06160;Parent=gene-NDY25_06160;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155366.1;locus_tag=NDY25_06160;product=prolyl oligopeptidase family serine peptidase;pseudo=true;transl_table=11 CP098604.1 cmsearch riboswitch 1380192 1380305 . + . ID=id-CP098604.1:1380192..1380305;Dbxref=RFAM:RF01057;Note=S-adenosyl-L-homocysteine riboswitch;bound_moiety=S-adenosyl-L-homocysteine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 1380337 1381779 . + . ID=gene-NDY25_06165;Name=ahcY;gbkey=Gene;gene=ahcY;gene_biotype=protein_coding;locus_tag=NDY25_06165 CP098604.1 Protein Homology CDS 1380337 1381779 . + 0 ID=cds-UUF03571.1;Parent=gene-NDY25_06165;Dbxref=NCBI_GP:UUF03571.1;Name=UUF03571.1;Ontology_term=GO:0006730,GO:0004013;gbkey=CDS;gene=ahcY;go_function=adenosylhomocysteinase activity|0004013||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035988.1;locus_tag=NDY25_06165;product=adenosylhomocysteinase;protein_id=UUF03571.1;transl_table=11 CP098604.1 Genbank gene 1381836 1382570 . + . ID=gene-NDY25_06170;Name=NDY25_06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06170 CP098604.1 Protein Homology CDS 1381836 1382570 . + 0 ID=cds-UUF03572.1;Parent=gene-NDY25_06170;Dbxref=NCBI_GP:UUF03572.1;Name=UUF03572.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016488.2;locus_tag=NDY25_06170;product=hypothetical protein;protein_id=UUF03572.1;transl_table=11 CP098604.1 Genbank gene 1382573 1382812 . + . ID=gene-NDY25_06175;Name=NDY25_06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06175 CP098604.1 GeneMarkS-2+ CDS 1382573 1382812 . + 0 ID=cds-UUF03573.1;Parent=gene-NDY25_06175;Dbxref=NCBI_GP:UUF03573.1;Name=UUF03573.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_06175;product=hypothetical protein;protein_id=UUF03573.1;transl_table=11 CP098604.1 Genbank gene 1382995 1383549 . - . ID=gene-NDY25_06180;Name=NDY25_06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06180 CP098604.1 Protein Homology CDS 1382995 1383549 . - 0 ID=cds-UUF03574.1;Parent=gene-NDY25_06180;Dbxref=NCBI_GP:UUF03574.1;Name=UUF03574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158826.1;locus_tag=NDY25_06180;product=DUF3228 family protein;protein_id=UUF03574.1;transl_table=11 CP098604.1 Genbank gene 1383608 1384153 . - . ID=gene-NDY25_06185;Name=NDY25_06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06185 CP098604.1 Protein Homology CDS 1383608 1384153 . - 0 ID=cds-UUF03575.1;Parent=gene-NDY25_06185;Dbxref=NCBI_GP:UUF03575.1;Name=UUF03575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260209.1;locus_tag=NDY25_06185;product=DUF2058 domain-containing protein;protein_id=UUF03575.1;transl_table=11 CP098604.1 Genbank gene 1384782 1386452 . + . ID=gene-NDY25_06190;Name=NDY25_06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06190 CP098604.1 Protein Homology CDS 1384782 1386452 . + 0 ID=cds-UUF03576.1;Parent=gene-NDY25_06190;Dbxref=NCBI_GP:UUF03576.1;Name=UUF03576.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012521.2;locus_tag=NDY25_06190;product=histidine phosphatase family protein;protein_id=UUF03576.1;transl_table=11 CP098604.1 Genbank gene 1386601 1387536 . - . ID=gene-NDY25_06195;Name=NDY25_06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06195 CP098604.1 Protein Homology CDS 1386601 1387536 . - 0 ID=cds-UUF03577.1;Parent=gene-NDY25_06195;Dbxref=NCBI_GP:UUF03577.1;Name=UUF03577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485244.1;locus_tag=NDY25_06195;product=Gfo/Idh/MocA family oxidoreductase;protein_id=UUF03577.1;transl_table=11 CP098604.1 Genbank pseudogene 1387701 1387882 . + . ID=gene-NDY25_06200;Name=NDY25_06200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06200;pseudo=true CP098604.1 Protein Homology CDS 1387701 1387882 . + 0 ID=cds-NDY25_06200;Parent=gene-NDY25_06200;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450129.1;locus_tag=NDY25_06200;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1388023 1389000 . - . ID=gene-NDY25_06205;Name=NDY25_06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06205 CP098604.1 Protein Homology CDS 1388023 1389000 . - 0 ID=cds-UUF03578.1;Parent=gene-NDY25_06205;Dbxref=NCBI_GP:UUF03578.1;Name=UUF03578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812340.1;locus_tag=NDY25_06205;product=NAD(P)H-quinone oxidoreductase;protein_id=UUF03578.1;transl_table=11 CP098604.1 Genbank gene 1389142 1389378 . - . ID=gene-NDY25_06210;Name=NDY25_06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06210 CP098604.1 Protein Homology CDS 1389142 1389378 . - 0 ID=cds-UUF03579.1;Parent=gene-NDY25_06210;Dbxref=NCBI_GP:UUF03579.1;Name=UUF03579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812342.1;locus_tag=NDY25_06210;product=hypothetical protein;protein_id=UUF03579.1;transl_table=11 CP098604.1 Genbank gene 1389592 1390419 . + . ID=gene-NDY25_06215;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=NDY25_06215 CP098604.1 Protein Homology CDS 1389592 1390419 . + 0 ID=cds-UUF03580.1;Parent=gene-NDY25_06215;Dbxref=NCBI_GP:UUF03580.1;Name=UUF03580.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155379.1;locus_tag=NDY25_06215;product=methylenetetrahydrofolate reductase [NAD(P)H];protein_id=UUF03580.1;transl_table=11 CP098604.1 Genbank gene 1390561 1391220 . + . ID=gene-NDY25_06220;Name=NDY25_06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06220 CP098604.1 Protein Homology CDS 1390561 1391220 . + 0 ID=cds-UUF04550.1;Parent=gene-NDY25_06220;Dbxref=NCBI_GP:UUF04550.1;Name=UUF04550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118326.1;locus_tag=NDY25_06220;product=hypothetical protein;protein_id=UUF04550.1;transl_table=11 CP098604.1 Genbank gene 1391474 1391992 . - . ID=gene-NDY25_06225;Name=NDY25_06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06225 CP098604.1 Protein Homology CDS 1391474 1391992 . - 0 ID=cds-UUF03581.1;Parent=gene-NDY25_06225;Dbxref=NCBI_GP:UUF03581.1;Name=UUF03581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902195.1;locus_tag=NDY25_06225;product=AAA family ATPase;protein_id=UUF03581.1;transl_table=11 CP098604.1 Genbank gene 1391989 1392936 . - . ID=gene-NDY25_06230;Name=NDY25_06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06230 CP098604.1 Protein Homology CDS 1391989 1392936 . - 0 ID=cds-UUF03582.1;Parent=gene-NDY25_06230;Dbxref=NCBI_GP:UUF03582.1;Name=UUF03582.1;Ontology_term=GO:0008413;gbkey=CDS;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005910877.1;locus_tag=NDY25_06230;product=Nudix family hydrolase;protein_id=UUF03582.1;transl_table=11 CP098604.1 Genbank gene 1393085 1393450 . - . ID=gene-NDY25_06235;Name=NDY25_06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06235 CP098604.1 Protein Homology CDS 1393085 1393450 . - 0 ID=cds-UUF03583.1;Parent=gene-NDY25_06235;Dbxref=NCBI_GP:UUF03583.1;Name=UUF03583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448960.1;locus_tag=NDY25_06235;product=glyoxalase;protein_id=UUF03583.1;transl_table=11 CP098604.1 Genbank gene 1393652 1396390 . - . ID=gene-NDY25_06240;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=NDY25_06240 CP098604.1 Protein Homology CDS 1393652 1396390 . - 0 ID=cds-UUF03584.1;Parent=gene-NDY25_06240;Dbxref=NCBI_GP:UUF03584.1;Name=UUF03584.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112773.1;locus_tag=NDY25_06240;product=preprotein translocase subunit SecA;protein_id=UUF03584.1;transl_table=11 CP098604.1 Genbank gene 1396546 1397490 . - . ID=gene-NDY25_06245;Name=NDY25_06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06245 CP098604.1 Protein Homology CDS 1396546 1397490 . - 0 ID=cds-UUF03585.1;Parent=gene-NDY25_06245;Dbxref=NCBI_GP:UUF03585.1;Name=UUF03585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158828.1;locus_tag=NDY25_06245;product=M23 family metallopeptidase;protein_id=UUF03585.1;transl_table=11 CP098604.1 Genbank gene 1397491 1397937 . + . ID=gene-NDY25_06250;Name=NDY25_06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06250 CP098604.1 Protein Homology CDS 1397491 1397937 . + 0 ID=cds-UUF03586.1;Parent=gene-NDY25_06250;Dbxref=NCBI_GP:UUF03586.1;Name=UUF03586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571812.1;locus_tag=NDY25_06250;product=DUF721 domain-containing protein;protein_id=UUF03586.1;transl_table=11 CP098604.1 Genbank gene 1398124 1399035 . - . ID=gene-NDY25_06255;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=NDY25_06255 CP098604.1 Protein Homology CDS 1398124 1399035 . - 0 ID=cds-UUF03587.1;Parent=gene-NDY25_06255;Dbxref=NCBI_GP:UUF03587.1;Name=UUF03587.1;Ontology_term=GO:0009245,GO:0008759;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|0008759||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237961.1;locus_tag=NDY25_06255;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=UUF03587.1;transl_table=11 CP098604.1 Genbank gene 1399271 1400509 . - . ID=gene-NDY25_06260;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=NDY25_06260 CP098604.1 Protein Homology CDS 1399271 1400509 . - 0 ID=cds-UUF03588.1;Parent=gene-NDY25_06260;Dbxref=NCBI_GP:UUF03588.1;Name=UUF03588.1;Ontology_term=GO:0000910,GO:0003924;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017170527.1;locus_tag=NDY25_06260;product=cell division protein FtsZ;protein_id=UUF03588.1;transl_table=11 CP098604.1 Genbank gene 1400800 1402035 . - . ID=gene-NDY25_06265;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=NDY25_06265 CP098604.1 Protein Homology CDS 1400800 1402035 . - 0 ID=cds-UUF03589.1;Parent=gene-NDY25_06265;Dbxref=NCBI_GP:UUF03589.1;Name=UUF03589.1;Ontology_term=GO:0043093,GO:0005515,GO:0005524;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019398559.1;locus_tag=NDY25_06265;product=cell division protein FtsA;protein_id=UUF03589.1;transl_table=11 CP098604.1 Genbank gene 1402032 1402868 . - . ID=gene-NDY25_06270;Name=NDY25_06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06270 CP098604.1 Protein Homology CDS 1402032 1402868 . - 0 ID=cds-UUF03590.1;Parent=gene-NDY25_06270;Dbxref=NCBI_GP:UUF03590.1;Name=UUF03590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448954.1;locus_tag=NDY25_06270;product=cell division protein FtsQ/DivIB;protein_id=UUF03590.1;transl_table=11 CP098604.1 Genbank gene 1402981 1403937 . - . ID=gene-NDY25_06275;Name=NDY25_06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06275 CP098604.1 Protein Homology CDS 1402981 1403937 . - 0 ID=cds-UUF03591.1;Parent=gene-NDY25_06275;Dbxref=NCBI_GP:UUF03591.1;Name=UUF03591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485275.1;locus_tag=NDY25_06275;product=D-alanine--D-alanine ligase;protein_id=UUF03591.1;transl_table=11 CP098604.1 Genbank gene 1403934 1405367 . - . ID=gene-NDY25_06280;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=NDY25_06280 CP098604.1 Protein Homology CDS 1403934 1405367 . - 0 ID=cds-UUF03592.1;Parent=gene-NDY25_06280;Dbxref=NCBI_GP:UUF03592.1;Name=UUF03592.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165008.1;locus_tag=NDY25_06280;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=UUF03592.1;transl_table=11 CP098604.1 Genbank gene 1405364 1406581 . - . ID=gene-NDY25_06285;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=NDY25_06285 CP098604.1 Protein Homology CDS 1405364 1406581 . - 0 ID=cds-UUF04551.1;Parent=gene-NDY25_06285;Dbxref=NCBI_GP:UUF04551.1;Name=UUF04551.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452810.1;locus_tag=NDY25_06285;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=UUF04551.1;transl_table=11 CP098604.1 Genbank gene 1406641 1408017 . - . ID=gene-NDY25_06290;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=NDY25_06290 CP098604.1 Protein Homology CDS 1406641 1408017 . - 0 ID=cds-UUF03593.1;Parent=gene-NDY25_06290;Dbxref=NCBI_GP:UUF03593.1;Name=UUF03593.1;Ontology_term=GO:0009252,GO:0051301,GO:0003674,GO:0016021;gbkey=CDS;gene=ftsW;go_component=integral component of membrane|0016021||IEA;go_function=molecular_function|0003674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155392.1;locus_tag=NDY25_06290;product=putative lipid II flippase FtsW;protein_id=UUF03593.1;transl_table=11 CP098604.1 Genbank gene 1408017 1409102 . - . ID=gene-NDY25_06295;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=NDY25_06295 CP098604.1 Protein Homology CDS 1408017 1409102 . - 0 ID=cds-UUF03594.1;Parent=gene-NDY25_06295;Dbxref=NCBI_GP:UUF03594.1;Name=UUF03594.1;Ontology_term=GO:0009252,GO:0008963;gbkey=CDS;gene=mraY;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452808.1;locus_tag=NDY25_06295;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=UUF03594.1;transl_table=11 CP098604.1 Genbank gene 1409092 1410585 . - . ID=gene-NDY25_06300;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=NDY25_06300 CP098604.1 Protein Homology CDS 1409092 1410585 . - 0 ID=cds-UUF03595.1;Parent=gene-NDY25_06300;Dbxref=NCBI_GP:UUF03595.1;Name=UUF03595.1;Ontology_term=GO:0009252,GO:0047480;gbkey=CDS;gene=murF;go_function=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485287.1;locus_tag=NDY25_06300;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=UUF03595.1;transl_table=11 CP098604.1 Genbank gene 1410582 1412057 . - . ID=gene-NDY25_06305;Name=NDY25_06305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06305 CP098604.1 Protein Homology CDS 1410582 1412057 . - 0 ID=cds-UUF04552.1;Parent=gene-NDY25_06305;Dbxref=NCBI_GP:UUF04552.1;Name=UUF04552.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991588.1;locus_tag=NDY25_06305;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=UUF04552.1;transl_table=11 CP098604.1 Genbank gene 1412066 1413934 . - . ID=gene-NDY25_06310;Name=NDY25_06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06310 CP098604.1 Protein Homology CDS 1412066 1413934 . - 0 ID=cds-UUF03596.1;Parent=gene-NDY25_06310;Dbxref=NCBI_GP:UUF03596.1;Name=UUF03596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381784.1;locus_tag=NDY25_06310;product=penicillin-binding protein 2;protein_id=UUF03596.1;transl_table=11 CP098604.1 Genbank gene 1414143 1414406 . - . ID=gene-NDY25_06315;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=NDY25_06315 CP098604.1 Protein Homology CDS 1414143 1414406 . - 0 ID=cds-UUF03597.1;Parent=gene-NDY25_06315;Dbxref=NCBI_GP:UUF03597.1;Name=UUF03597.1;Ontology_term=GO:0000910,GO:0016021;gbkey=CDS;gene=ftsL;go_component=integral component of membrane|0016021||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344441.1;locus_tag=NDY25_06315;product=cell division protein FtsL;protein_id=UUF03597.1;transl_table=11 CP098604.1 Genbank gene 1414403 1415461 . - . ID=gene-NDY25_06320;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=NDY25_06320 CP098604.1 Protein Homology CDS 1414403 1415461 . - 0 ID=cds-UUF04553.1;Parent=gene-NDY25_06320;Dbxref=NCBI_GP:UUF04553.1;Name=UUF04553.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903086.1;locus_tag=NDY25_06320;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=UUF04553.1;transl_table=11 CP098604.1 Genbank gene 1415476 1415931 . - . ID=gene-NDY25_06325;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=NDY25_06325 CP098604.1 Protein Homology CDS 1415476 1415931 . - 0 ID=cds-UUF03598.1;Parent=gene-NDY25_06325;Dbxref=NCBI_GP:UUF03598.1;Name=UUF03598.1;Ontology_term=GO:0051302,GO:0043565;gbkey=CDS;gene=mraZ;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of cell division|0051302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367651.1;locus_tag=NDY25_06325;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=UUF03598.1;transl_table=11 CP098604.1 Genbank gene 1416246 1417013 . + . ID=gene-NDY25_06330;Name=NDY25_06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06330 CP098604.1 Protein Homology CDS 1416246 1417013 . + 0 ID=cds-UUF03599.1;Parent=gene-NDY25_06330;Dbxref=NCBI_GP:UUF03599.1;Name=UUF03599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035954.1;locus_tag=NDY25_06330;product=NRDE family protein;protein_id=UUF03599.1;transl_table=11 CP098604.1 Genbank gene 1417064 1417315 . + . ID=gene-NDY25_06335;Name=NDY25_06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06335 CP098604.1 Protein Homology CDS 1417064 1417315 . + 0 ID=cds-UUF03600.1;Parent=gene-NDY25_06335;Dbxref=NCBI_GP:UUF03600.1;Name=UUF03600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988736.1;locus_tag=NDY25_06335;product=type II toxin-antitoxin system CcdA family antitoxin;protein_id=UUF03600.1;transl_table=11 CP098604.1 Genbank pseudogene 1417312 1417628 . + . ID=gene-NDY25_06340;Name=NDY25_06340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06340;pseudo=true CP098604.1 Protein Homology CDS 1417312 1417628 . + 0 ID=cds-NDY25_06340;Parent=gene-NDY25_06340;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367656.1;locus_tag=NDY25_06340;product=CcdB family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1418011 1418360 . - . ID=gene-NDY25_06345;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=NDY25_06345 CP098604.1 cmsearch RNase_P_RNA 1418011 1418360 . - . ID=rna-NDY25_06345;Parent=gene-NDY25_06345;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06345;product=RNase P RNA component class A CP098604.1 cmsearch exon 1418011 1418360 . - . ID=exon-NDY25_06345-1;Parent=rna-NDY25_06345;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06345;product=RNase P RNA component class A CP098604.1 Genbank gene 1418507 1419328 . - . ID=gene-NDY25_06350;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=NDY25_06350 CP098604.1 Protein Homology CDS 1418507 1419328 . - 0 ID=cds-UUF03601.1;Parent=gene-NDY25_06350;Dbxref=NCBI_GP:UUF03601.1;Name=UUF03601.1;Ontology_term=GO:0000451,GO:0008649,GO:0008757;gbkey=CDS;gene=rsmI;go_function=rRNA methyltransferase activity|0008649||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=rRNA 2'-O-methylation|0000451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035951.1;locus_tag=NDY25_06350;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=UUF03601.1;transl_table=11 CP098604.1 Genbank gene 1419411 1421141 . + . ID=gene-NDY25_06355;Name=NDY25_06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06355 CP098604.1 Protein Homology CDS 1419411 1421141 . + 0 ID=cds-UUF03602.1;Parent=gene-NDY25_06355;Dbxref=NCBI_GP:UUF03602.1;Name=UUF03602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812401.1;locus_tag=NDY25_06355;product=penicillin-binding protein activator;protein_id=UUF03602.1;transl_table=11 CP098604.1 Genbank gene 1421146 1421514 . + . ID=gene-NDY25_06360;Name=NDY25_06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06360 CP098604.1 Protein Homology CDS 1421146 1421514 . + 0 ID=cds-UUF03603.1;Parent=gene-NDY25_06360;Dbxref=NCBI_GP:UUF03603.1;Name=UUF03603.1;Ontology_term=GO:0003676,GO:0004518;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571510.1;locus_tag=NDY25_06360;product=YraN family protein;protein_id=UUF03603.1;transl_table=11 CP098604.1 Genbank gene 1421531 1422070 . + . ID=gene-NDY25_06365;Name=NDY25_06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06365 CP098604.1 Protein Homology CDS 1421531 1422070 . + 0 ID=cds-UUF03604.1;Parent=gene-NDY25_06365;Dbxref=NCBI_GP:UUF03604.1;Name=UUF03604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005910944.1;locus_tag=NDY25_06365;product=metal-dependent hydrolase;protein_id=UUF03604.1;transl_table=11 CP098604.1 Genbank gene 1422067 1423455 . + . ID=gene-NDY25_06370;Name=NDY25_06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06370 CP098604.1 Protein Homology CDS 1422067 1423455 . + 0 ID=cds-UUF03605.1;Parent=gene-NDY25_06370;Dbxref=NCBI_GP:UUF03605.1;Name=UUF03605.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903093.1;locus_tag=NDY25_06370;product=FAD-binding protein;protein_id=UUF03605.1;transl_table=11 CP098604.1 Genbank gene 1423637 1425607 . - . ID=gene-NDY25_06375;Name=NDY25_06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06375 CP098604.1 Protein Homology CDS 1423637 1425607 . - 0 ID=cds-UUF03606.1;Parent=gene-NDY25_06375;Dbxref=NCBI_GP:UUF03606.1;Name=UUF03606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903094.1;locus_tag=NDY25_06375;product=S9 family peptidase;protein_id=UUF03606.1;transl_table=11 CP098604.1 Genbank gene 1425899 1426615 . - . ID=gene-NDY25_06380;Name=NDY25_06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06380 CP098604.1 Protein Homology CDS 1425899 1426615 . - 0 ID=cds-UUF03607.1;Parent=gene-NDY25_06380;Dbxref=NCBI_GP:UUF03607.1;Name=UUF03607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158836.1;locus_tag=NDY25_06380;product=response regulator transcription factor;protein_id=UUF03607.1;transl_table=11 CP098604.1 Genbank gene 1426605 1429265 . - . ID=gene-NDY25_06385;Name=NDY25_06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06385 CP098604.1 Protein Homology CDS 1426605 1429265 . - 0 ID=cds-UUF03608.1;Parent=gene-NDY25_06385;Dbxref=NCBI_GP:UUF03608.1;Name=UUF03608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849531.1;locus_tag=NDY25_06385;product=sensor histidine kinase KdpD;protein_id=UUF03608.1;transl_table=11 CP098604.1 Genbank gene 1429342 1429995 . - . ID=gene-NDY25_06390;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=NDY25_06390 CP098604.1 Protein Homology CDS 1429342 1429995 . - 0 ID=cds-UUF03609.1;Parent=gene-NDY25_06390;Dbxref=NCBI_GP:UUF03609.1;Name=UUF03609.1;Ontology_term=GO:0006813,GO:0008556,GO:0016021;gbkey=CDS;gene=kdpC;go_component=integral component of membrane|0016021||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299903.1;locus_tag=NDY25_06390;product=potassium-transporting ATPase subunit KdpC;protein_id=UUF03609.1;transl_table=11 CP098604.1 Genbank gene 1429999 1432047 . - . ID=gene-NDY25_06395;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=NDY25_06395 CP098604.1 Protein Homology CDS 1429999 1432047 . - 0 ID=cds-UUF03610.1;Parent=gene-NDY25_06395;Dbxref=NCBI_GP:UUF03610.1;Name=UUF03610.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpB;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903098.1;locus_tag=NDY25_06395;product=potassium-transporting ATPase subunit KdpB;protein_id=UUF03610.1;transl_table=11 CP098604.1 Genbank gene 1432060 1433874 . - . ID=gene-NDY25_06400;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=NDY25_06400 CP098604.1 Protein Homology CDS 1432060 1433874 . - 0 ID=cds-UUF03611.1;Parent=gene-NDY25_06400;Dbxref=NCBI_GP:UUF03611.1;Name=UUF03611.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490514.1;locus_tag=NDY25_06400;product=potassium-transporting ATPase subunit KdpA;protein_id=UUF03611.1;transl_table=11 CP098604.1 Genbank gene 1433890 1433982 . - . ID=gene-NDY25_06405;Name=NDY25_06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06405 CP098604.1 Protein Homology CDS 1433890 1433982 . - 0 ID=cds-UUF03612.1;Parent=gene-NDY25_06405;Dbxref=NCBI_GP:UUF03612.1;Name=UUF03612.1;Ontology_term=GO:0043462,GO:0008556,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=regulation of ATP-dependent activity|0043462||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452907.1;locus_tag=NDY25_06405;product=potassium-transporting ATPase subunit F;protein_id=UUF03612.1;transl_table=11 CP098604.1 Genbank gene 1434894 1436474 . - . ID=gene-NDY25_06410;Name=NDY25_06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06410 CP098604.1 Protein Homology CDS 1434894 1436474 . - 0 ID=cds-UUF03613.1;Parent=gene-NDY25_06410;Dbxref=NCBI_GP:UUF03613.1;Name=UUF03613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171772.1;locus_tag=NDY25_06410;product=X-Pro dipeptidyl-peptidase;protein_id=UUF03613.1;transl_table=11 CP098604.1 Genbank gene 1436948 1437922 . - . ID=gene-NDY25_06415;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=NDY25_06415 CP098604.1 Protein Homology CDS 1436948 1437922 . - 0 ID=cds-UUF03614.1;Parent=gene-NDY25_06415;Dbxref=NCBI_GP:UUF03614.1;Name=UUF03614.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925283.1;locus_tag=NDY25_06415;product=thiamine-phosphate kinase;protein_id=UUF03614.1;transl_table=11 CP098604.1 Genbank gene 1438033 1438512 . - . ID=gene-NDY25_06420;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=NDY25_06420 CP098604.1 Protein Homology CDS 1438033 1438512 . - 0 ID=cds-UUF03615.1;Parent=gene-NDY25_06420;Dbxref=NCBI_GP:UUF03615.1;Name=UUF03615.1;Ontology_term=GO:0006355;gbkey=CDS;gene=nusB;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035937.1;locus_tag=NDY25_06420;product=transcription antitermination factor NusB;protein_id=UUF03615.1;transl_table=11 CP098604.1 Genbank gene 1438509 1438973 . - . ID=gene-NDY25_06425;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=NDY25_06425 CP098604.1 Protein Homology CDS 1438509 1438973 . - 0 ID=cds-UUF03616.1;Parent=gene-NDY25_06425;Dbxref=NCBI_GP:UUF03616.1;Name=UUF03616.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409394.1;locus_tag=NDY25_06425;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=UUF03616.1;transl_table=11 CP098604.1 Genbank gene 1439152 1439227 . + . ID=gene-NDY25_06430;Name=NDY25_06430;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_06430 CP098604.1 cmsearch ncRNA 1439152 1439227 . + . ID=rna-NDY25_06430;Parent=gene-NDY25_06430;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06430;product=sX9 sRNA CP098604.1 cmsearch exon 1439152 1439227 . + . ID=exon-NDY25_06430-1;Parent=rna-NDY25_06430;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06430;product=sX9 sRNA CP098604.1 Genbank gene 1439232 1440371 . - . ID=gene-NDY25_06435;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=NDY25_06435 CP098604.1 Protein Homology CDS 1439232 1440371 . - 0 ID=cds-UUF03617.1;Parent=gene-NDY25_06435;Dbxref=NCBI_GP:UUF03617.1;Name=UUF03617.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089378.1;locus_tag=NDY25_06435;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=UUF03617.1;transl_table=11 CP098604.1 Genbank gene 1440368 1440970 . - . ID=gene-NDY25_06440;Name=NDY25_06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06440 CP098604.1 Protein Homology CDS 1440368 1440970 . - 0 ID=cds-UUF03618.1;Parent=gene-NDY25_06440;Dbxref=NCBI_GP:UUF03618.1;Name=UUF03618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576782.1;locus_tag=NDY25_06440;product=riboflavin synthase;protein_id=UUF03618.1;transl_table=11 CP098604.1 cmsearch riboswitch 1441133 1441311 . - . ID=id-CP098604.1:1441133..1441311;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 1441529 1442152 . + . ID=gene-NDY25_06445;Name=NDY25_06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06445 CP098604.1 Protein Homology CDS 1441529 1442152 . + 0 ID=cds-UUF03619.1;Parent=gene-NDY25_06445;Dbxref=NCBI_GP:UUF03619.1;Name=UUF03619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035933.1;locus_tag=NDY25_06445;product=hypothetical protein;protein_id=UUF03619.1;transl_table=11 CP098604.1 Genbank gene 1443072 1444166 . - . ID=gene-NDY25_06450;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=NDY25_06450 CP098604.1 Protein Homology CDS 1443072 1444166 . - 0 ID=cds-UUF03620.1;Parent=gene-NDY25_06450;Dbxref=NCBI_GP:UUF03620.1;Name=UUF03620.1;Ontology_term=GO:0008703,GO:0008835;gbkey=CDS;gene=ribD;go_function=5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453214.1;locus_tag=NDY25_06450;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=UUF03620.1;transl_table=11 CP098604.1 Genbank gene 1444163 1444648 . - . ID=gene-NDY25_06455;Name=NDY25_06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06455 CP098604.1 Protein Homology CDS 1444163 1444648 . - 0 ID=cds-UUF03621.1;Parent=gene-NDY25_06455;Dbxref=NCBI_GP:UUF03621.1;Name=UUF03621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453215.1;locus_tag=NDY25_06455;product=GNAT family N-acetyltransferase;protein_id=UUF03621.1;transl_table=11 CP098604.1 Genbank gene 1444645 1445163 . - . ID=gene-NDY25_06460;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=NDY25_06460 CP098604.1 Protein Homology CDS 1444645 1445163 . - 0 ID=cds-UUF04554.1;Parent=gene-NDY25_06460;Dbxref=NCBI_GP:UUF04554.1;Name=UUF04554.1;Ontology_term=GO:0006355,GO:0140110;gbkey=CDS;gene=nrdR;go_function=transcription regulator activity|0140110||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453216.1;locus_tag=NDY25_06460;product=transcriptional regulator NrdR;protein_id=UUF04554.1;transl_table=11 CP098604.1 Genbank gene 1445270 1446538 . - . ID=gene-NDY25_06465;Name=NDY25_06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06465 CP098604.1 Protein Homology CDS 1445270 1446538 . - 0 ID=cds-UUF03622.1;Parent=gene-NDY25_06465;Dbxref=NCBI_GP:UUF03622.1;Name=UUF03622.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260263.1;locus_tag=NDY25_06465;product=serine hydroxymethyltransferase;protein_id=UUF03622.1;transl_table=11 CP098604.1 Genbank gene 1446735 1447238 . - . ID=gene-NDY25_06470;Name=NDY25_06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06470 CP098604.1 Protein Homology CDS 1446735 1447238 . - 0 ID=cds-UUF03623.1;Parent=gene-NDY25_06470;Dbxref=NCBI_GP:UUF03623.1;Name=UUF03623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156712.1;locus_tag=NDY25_06470;product=RcnB family protein;protein_id=UUF03623.1;transl_table=11 CP098604.1 Genbank gene 1447463 1449124 . + . ID=gene-NDY25_06475;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=NDY25_06475 CP098604.1 Protein Homology CDS 1447463 1449124 . + 0 ID=cds-UUF03624.1;Parent=gene-NDY25_06475;Dbxref=NCBI_GP:UUF03624.1;Name=UUF03624.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346396.1;locus_tag=NDY25_06475;product=energy-dependent translational throttle protein EttA;protein_id=UUF03624.1;transl_table=11 CP098604.1 Genbank gene 1449301 1449816 . - . ID=gene-NDY25_06480;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=NDY25_06480 CP098604.1 Protein Homology CDS 1449301 1449816 . - 0 ID=cds-UUF03625.1;Parent=gene-NDY25_06480;Dbxref=NCBI_GP:UUF03625.1;Name=UUF03625.1;Ontology_term=GO:0006464,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303679.1;locus_tag=NDY25_06480;product=peptide deformylase;protein_id=UUF03625.1;transl_table=11 CP098604.1 Genbank gene 1450471 1450884 . + . ID=gene-NDY25_06485;Name=NDY25_06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06485 CP098604.1 Protein Homology CDS 1450471 1450884 . + 0 ID=cds-UUF03626.1;Parent=gene-NDY25_06485;Dbxref=NCBI_GP:UUF03626.1;Name=UUF03626.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091040.1;locus_tag=NDY25_06485;product=hypothetical protein;protein_id=UUF03626.1;transl_table=11 CP098604.1 Genbank gene 1450877 1452535 . + . ID=gene-NDY25_06490;Name=NDY25_06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06490 CP098604.1 Protein Homology CDS 1450877 1452535 . + 0 ID=cds-UUF03627.1;Parent=gene-NDY25_06490;Dbxref=NCBI_GP:UUF03627.1;Name=UUF03627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381866.1;locus_tag=NDY25_06490;product=serine protease;protein_id=UUF03627.1;transl_table=11 CP098604.1 Genbank gene 1452597 1453778 . - . ID=gene-NDY25_06495;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=NDY25_06495 CP098604.1 Protein Homology CDS 1452597 1453778 . - 0 ID=cds-UUF03628.1;Parent=gene-NDY25_06495;Dbxref=NCBI_GP:UUF03628.1;Name=UUF03628.1;Ontology_term=GO:0019358,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=nicotinate nucleotide salvage|0019358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367736.1;locus_tag=NDY25_06495;product=nicotinate phosphoribosyltransferase;protein_id=UUF03628.1;transl_table=11 CP098604.1 Genbank gene 1453951 1454919 . - . ID=gene-NDY25_06500;Name=NDY25_06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06500 CP098604.1 Protein Homology CDS 1453951 1454919 . - 0 ID=cds-UUF03629.1;Parent=gene-NDY25_06500;Dbxref=NCBI_GP:UUF03629.1;Name=UUF03629.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490750.1;locus_tag=NDY25_06500;product=glycosidase-like protein;protein_id=UUF03629.1;transl_table=11 CP098604.1 Genbank gene 1454901 1456205 . - . ID=gene-NDY25_06505;Name=NDY25_06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06505 CP098604.1 Protein Homology CDS 1454901 1456205 . - 0 ID=cds-UUF03630.1;Parent=gene-NDY25_06505;Dbxref=NCBI_GP:UUF03630.1;Name=UUF03630.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165465.1;locus_tag=NDY25_06505;product=hypothetical protein;protein_id=UUF03630.1;transl_table=11 CP098604.1 Genbank gene 1456255 1458162 . - . ID=gene-NDY25_06510;Name=NDY25_06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06510 CP098604.1 Protein Homology CDS 1456255 1458162 . - 0 ID=cds-UUF03631.1;Parent=gene-NDY25_06510;Dbxref=NCBI_GP:UUF03631.1;Name=UUF03631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367740.1;locus_tag=NDY25_06510;product=glycosyltransferase;protein_id=UUF03631.1;transl_table=11 CP098604.1 Genbank gene 1458175 1459089 . - . ID=gene-NDY25_06515;Name=NDY25_06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06515 CP098604.1 Protein Homology CDS 1458175 1459089 . - 0 ID=cds-UUF04555.1;Parent=gene-NDY25_06515;Dbxref=NCBI_GP:UUF04555.1;Name=UUF04555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003475856.1;locus_tag=NDY25_06515;product=hypothetical protein;protein_id=UUF04555.1;transl_table=11 CP098604.1 Genbank gene 1459340 1460179 . - . ID=gene-NDY25_06520;Name=NDY25_06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06520 CP098604.1 Protein Homology CDS 1459340 1460179 . - 0 ID=cds-UUF03632.1;Parent=gene-NDY25_06520;Dbxref=NCBI_GP:UUF03632.1;Name=UUF03632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174042.1;locus_tag=NDY25_06520;product=glycosyltransferase family 2 protein;protein_id=UUF03632.1;transl_table=11 CP098604.1 Genbank gene 1460575 1461732 . + . ID=gene-NDY25_06525;Name=NDY25_06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06525 CP098604.1 Protein Homology CDS 1460575 1461732 . + 0 ID=cds-UUF03633.1;Parent=gene-NDY25_06525;Dbxref=NCBI_GP:UUF03633.1;Name=UUF03633.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300523.1;locus_tag=NDY25_06525;product=aminoglycoside phosphotransferase family protein;protein_id=UUF03633.1;transl_table=11 CP098604.1 Genbank gene 1461765 1463933 . + . ID=gene-NDY25_06530;Name=NDY25_06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06530 CP098604.1 Protein Homology CDS 1461765 1463933 . + 0 ID=cds-UUF03634.1;Parent=gene-NDY25_06530;Dbxref=NCBI_GP:UUF03634.1;Name=UUF03634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429142.1;locus_tag=NDY25_06530;product=TonB-dependent receptor;protein_id=UUF03634.1;transl_table=11 CP098604.1 Genbank gene 1464169 1464744 . + . ID=gene-NDY25_06535;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=NDY25_06535 CP098604.1 Protein Homology CDS 1464169 1464744 . + 0 ID=cds-UUF03635.1;Parent=gene-NDY25_06535;Dbxref=NCBI_GP:UUF03635.1;Name=UUF03635.1;Ontology_term=GO:0015890,GO:0015663,GO:0016021;gbkey=CDS;gene=pnuC;go_component=integral component of membrane|0016021||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450724.1;locus_tag=NDY25_06535;product=nicotinamide riboside transporter PnuC;protein_id=UUF03635.1;transl_table=11 CP098604.1 Genbank gene 1464850 1465578 . + . ID=gene-NDY25_06540;Name=NDY25_06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06540 CP098604.1 Protein Homology CDS 1464850 1465578 . + 0 ID=cds-UUF03636.1;Parent=gene-NDY25_06540;Dbxref=NCBI_GP:UUF03636.1;Name=UUF03636.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450725.1;locus_tag=NDY25_06540;product=UTRA domain-containing protein;protein_id=UUF03636.1;transl_table=11 CP098604.1 Genbank gene 1465988 1466079 . - . ID=gene-NDY25_06545;Name=NDY25_06545;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_06545 CP098604.1 cmsearch ncRNA 1465988 1466079 . - . ID=rna-NDY25_06545;Parent=gene-NDY25_06545;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06545;product=sX9 sRNA CP098604.1 cmsearch exon 1465988 1466079 . - . ID=exon-NDY25_06545-1;Parent=rna-NDY25_06545;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06545;product=sX9 sRNA CP098604.1 Genbank gene 1466139 1466978 . - . ID=gene-NDY25_06550;Name=NDY25_06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06550 CP098604.1 Protein Homology CDS 1466139 1466978 . - 0 ID=cds-UUF03637.1;Parent=gene-NDY25_06550;Dbxref=NCBI_GP:UUF03637.1;Name=UUF03637.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901897.1;locus_tag=NDY25_06550;product=glycosyltransferase;protein_id=UUF03637.1;transl_table=11 CP098604.1 Genbank gene 1466975 1469299 . - . ID=gene-NDY25_06555;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=NDY25_06555 CP098604.1 Protein Homology CDS 1466975 1469299 . - 0 ID=cds-UUF03638.1;Parent=gene-NDY25_06555;Dbxref=NCBI_GP:UUF03638.1;Name=UUF03638.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367762.1;locus_tag=NDY25_06555;product=type II secretion system secretin GspD;protein_id=UUF03638.1;transl_table=11 CP098604.1 Genbank gene 1469296 1470078 . - . ID=gene-NDY25_06560;Name=NDY25_06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06560 CP098604.1 Protein Homology CDS 1469296 1470078 . - 0 ID=cds-UUF03639.1;Parent=gene-NDY25_06560;Dbxref=NCBI_GP:UUF03639.1;Name=UUF03639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035909.1;locus_tag=NDY25_06560;product=general secretion pathway protein GspN;protein_id=UUF03639.1;transl_table=11 CP098604.1 Genbank gene 1470068 1470721 . - . ID=gene-NDY25_06565;Name=gspM;gbkey=Gene;gene=gspM;gene_biotype=protein_coding;locus_tag=NDY25_06565 CP098604.1 Protein Homology CDS 1470068 1470721 . - 0 ID=cds-UUF03640.1;Parent=gene-NDY25_06565;Dbxref=NCBI_GP:UUF03640.1;Name=UUF03640.1;gbkey=CDS;gene=gspM;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114570.1;locus_tag=NDY25_06565;product=type II secretion system protein GspM;protein_id=UUF03640.1;transl_table=11 CP098604.1 Genbank gene 1470705 1471826 . - . ID=gene-NDY25_06570;Name=NDY25_06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06570 CP098604.1 Protein Homology CDS 1470705 1471826 . - 0 ID=cds-UUF03641.1;Parent=gene-NDY25_06570;Dbxref=NCBI_GP:UUF03641.1;Name=UUF03641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504586.1;locus_tag=NDY25_06570;product=PilN domain-containing protein;protein_id=UUF03641.1;transl_table=11 CP098604.1 Genbank gene 1471823 1472674 . - . ID=gene-NDY25_06575;Name=NDY25_06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06575 CP098604.1 Protein Homology CDS 1471823 1472674 . - 0 ID=cds-UUF03642.1;Parent=gene-NDY25_06575;Dbxref=NCBI_GP:UUF03642.1;Name=UUF03642.1;Ontology_term=GO:0009306,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158144.1;locus_tag=NDY25_06575;product=type II secretion system protein GspK;protein_id=UUF03642.1;transl_table=11 CP098604.1 Genbank gene 1472671 1473306 . - . ID=gene-NDY25_06580;Name=NDY25_06580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06580 CP098604.1 Protein Homology CDS 1472671 1473306 . - 0 ID=cds-UUF03643.1;Parent=gene-NDY25_06580;Dbxref=NCBI_GP:UUF03643.1;Name=UUF03643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446065.1;locus_tag=NDY25_06580;product=type II secretion system protein J;protein_id=UUF03643.1;transl_table=11 CP098604.1 Genbank gene 1473303 1473719 . - . ID=gene-NDY25_06585;Name=NDY25_06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06585 CP098604.1 Protein Homology CDS 1473303 1473719 . - 0 ID=cds-UUF03644.1;Parent=gene-NDY25_06585;Dbxref=NCBI_GP:UUF03644.1;Name=UUF03644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450111.1;locus_tag=NDY25_06585;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=UUF03644.1;transl_table=11 CP098604.1 Genbank gene 1473716 1474225 . - . ID=gene-NDY25_06590;Name=NDY25_06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06590 CP098604.1 Protein Homology CDS 1473716 1474225 . - 0 ID=cds-UUF03645.1;Parent=gene-NDY25_06590;Dbxref=NCBI_GP:UUF03645.1;Name=UUF03645.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920744.1;locus_tag=NDY25_06590;product=GspH/FimT family pseudopilin;protein_id=UUF03645.1;transl_table=11 CP098604.1 Genbank gene 1474236 1474667 . - . ID=gene-NDY25_06595;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=NDY25_06595 CP098604.1 Protein Homology CDS 1474236 1474667 . - 0 ID=cds-UUF03646.1;Parent=gene-NDY25_06595;Dbxref=NCBI_GP:UUF03646.1;Name=UUF03646.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490502.1;locus_tag=NDY25_06595;product=type II secretion system major pseudopilin GspG;protein_id=UUF03646.1;transl_table=11 CP098604.1 Genbank gene 1474791 1476008 . - . ID=gene-NDY25_06600;Name=NDY25_06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06600 CP098604.1 Protein Homology CDS 1474791 1476008 . - 0 ID=cds-UUF03647.1;Parent=gene-NDY25_06600;Dbxref=NCBI_GP:UUF03647.1;Name=UUF03647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504592.1;locus_tag=NDY25_06600;product=type II secretion system F family protein;protein_id=UUF03647.1;transl_table=11 CP098604.1 Genbank gene 1476184 1477911 . - . ID=gene-NDY25_06605;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=NDY25_06605 CP098604.1 Protein Homology CDS 1476184 1477911 . - 0 ID=cds-UUF03648.1;Parent=gene-NDY25_06605;Dbxref=NCBI_GP:UUF03648.1;Name=UUF03648.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237945.1;locus_tag=NDY25_06605;product=type II secretion system ATPase GspE;protein_id=UUF03648.1;transl_table=11 CP098604.1 Genbank pseudogene 1478041 1479920 . - . ID=gene-NDY25_06610;Name=NDY25_06610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06610;pseudo=true CP098604.1 Protein Homology CDS 1478041 1479920 . - 0 ID=cds-NDY25_06610;Parent=gene-NDY25_06610;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920748.1;locus_tag=NDY25_06610;product=S8 family serine peptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1480149 1486709 . - . ID=gene-NDY25_06615;Name=NDY25_06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06615 CP098604.1 Protein Homology CDS 1480149 1486709 . - 0 ID=cds-UUF03649.1;Parent=gene-NDY25_06615;Dbxref=NCBI_GP:UUF03649.1;Name=UUF03649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113272.1;locus_tag=NDY25_06615;product=hypothetical protein;protein_id=UUF03649.1;transl_table=11 CP098604.1 Genbank gene 1487254 1489137 . - . ID=gene-NDY25_06620;Name=NDY25_06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06620 CP098604.1 Protein Homology CDS 1487254 1489137 . - 0 ID=cds-UUF03650.1;Parent=gene-NDY25_06620;Dbxref=NCBI_GP:UUF03650.1;Name=UUF03650.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172353.1;locus_tag=NDY25_06620;product=S8 family serine peptidase;protein_id=UUF03650.1;transl_table=11 CP098604.1 Genbank gene 1489230 1493093 . - . ID=gene-NDY25_06625;Name=NDY25_06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06625 CP098604.1 Protein Homology CDS 1489230 1493093 . - 0 ID=cds-UUF03651.1;Parent=gene-NDY25_06625;Dbxref=NCBI_GP:UUF03651.1;Name=UUF03651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902878.1;locus_tag=NDY25_06625;product=YadA-like family protein;protein_id=UUF03651.1;transl_table=11 CP098604.1 Genbank gene 1492995 1493228 . + . ID=gene-NDY25_06630;Name=NDY25_06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06630 CP098604.1 GeneMarkS-2+ CDS 1492995 1493228 . + 0 ID=cds-UUF04762.1;Parent=gene-NDY25_06630;Dbxref=NCBI_GP:UUF04762.1;Name=UUF04762.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_06630;product=hypothetical protein;protein_id=UUF04762.1;transl_table=11 CP098604.1 Genbank gene 1493958 1498004 . - . ID=gene-NDY25_06635;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=purI;locus_tag=NDY25_06635 CP098604.1 Protein Homology CDS 1493958 1498004 . - 0 ID=cds-UUF03652.1;Parent=gene-NDY25_06635;Dbxref=NCBI_GP:UUF03652.1;Name=UUF03652.1;Ontology_term=GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367790.1;locus_tag=NDY25_06635;product=phosphoribosylformylglycinamidine synthase;protein_id=UUF03652.1;transl_table=11 CP098604.1 Genbank gene 1498223 1499020 . - . ID=gene-NDY25_06640;Name=NDY25_06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06640 CP098604.1 Protein Homology CDS 1498223 1499020 . - 0 ID=cds-UUF03653.1;Parent=gene-NDY25_06640;Dbxref=NCBI_GP:UUF03653.1;Name=UUF03653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490215.1;locus_tag=NDY25_06640;product=DsbC family protein;protein_id=UUF03653.1;transl_table=11 CP098604.1 Genbank gene 1499225 1500196 . - . ID=gene-NDY25_06645;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=NDY25_06645 CP098604.1 Protein Homology CDS 1499225 1500196 . - 0 ID=cds-UUF03654.1;Parent=gene-NDY25_06645;Dbxref=NCBI_GP:UUF03654.1;Name=UUF03654.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932805.1;locus_tag=NDY25_06645;product=site-specific tyrosine recombinase XerD;protein_id=UUF03654.1;transl_table=11 CP098604.1 Genbank gene 1500456 1500923 . + . ID=gene-NDY25_06650;Name=NDY25_06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06650 CP098604.1 Protein Homology CDS 1500456 1500923 . + 0 ID=cds-UUF04556.1;Parent=gene-NDY25_06650;Dbxref=NCBI_GP:UUF04556.1;Name=UUF04556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303262.1;locus_tag=NDY25_06650;product=RDD family protein;protein_id=UUF04556.1;transl_table=11 CP098604.1 Genbank gene 1501125 1502231 . - . ID=gene-NDY25_06655;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=NDY25_06655 CP098604.1 Protein Homology CDS 1501125 1502231 . - 0 ID=cds-UUF03655.1;Parent=gene-NDY25_06655;Dbxref=NCBI_GP:UUF03655.1;Name=UUF03655.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptG;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964177.1;locus_tag=NDY25_06655;product=LPS export ABC transporter permease LptG;protein_id=UUF03655.1;transl_table=11 CP098604.1 Genbank gene 1502228 1503310 . - . ID=gene-NDY25_06660;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=NDY25_06660 CP098604.1 Protein Homology CDS 1502228 1503310 . - 0 ID=cds-UUF03656.1;Parent=gene-NDY25_06660;Dbxref=NCBI_GP:UUF03656.1;Name=UUF03656.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptF;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052356.1;locus_tag=NDY25_06660;product=LPS export ABC transporter permease LptF;protein_id=UUF03656.1;transl_table=11 CP098604.1 Genbank gene 1503418 1504902 . + . ID=gene-NDY25_06665;Name=NDY25_06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06665 CP098604.1 Protein Homology CDS 1503418 1504902 . + 0 ID=cds-UUF03657.1;Parent=gene-NDY25_06665;Dbxref=NCBI_GP:UUF03657.1;Name=UUF03657.1;Ontology_term=GO:0019538,GO:0070006;gbkey=CDS;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017911113.1;locus_tag=NDY25_06665;product=leucyl aminopeptidase;protein_id=UUF03657.1;transl_table=11 CP098604.1 Genbank gene 1505024 1505449 . + . ID=gene-NDY25_06670;Name=NDY25_06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06670 CP098604.1 Protein Homology CDS 1505024 1505449 . + 0 ID=cds-UUF03658.1;Parent=gene-NDY25_06670;Dbxref=NCBI_GP:UUF03658.1;Name=UUF03658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902887.1;locus_tag=NDY25_06670;product=DNA polymerase III subunit chi;protein_id=UUF03658.1;transl_table=11 CP098604.1 Genbank gene 1505554 1508619 . + . ID=gene-NDY25_06675;Name=NDY25_06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06675 CP098604.1 Protein Homology CDS 1505554 1508619 . + 0 ID=cds-UUF03659.1;Parent=gene-NDY25_06675;Dbxref=NCBI_GP:UUF03659.1;Name=UUF03659.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159789.1;locus_tag=NDY25_06675;product=valine--tRNA ligase;protein_id=UUF03659.1;transl_table=11 CP098604.1 Genbank pseudogene 1509580 1509769 . - . ID=gene-NDY25_06680;Name=NDY25_06680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06680;pseudo=true CP098604.1 Protein Homology CDS 1509580 1509769 . - 0 ID=cds-NDY25_06680;Parent=gene-NDY25_06680;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159791.1;locus_tag=NDY25_06680;product=pectate lyase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1509941 1511083 . - . ID=gene-NDY25_06685;Name=NDY25_06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06685 CP098604.1 Protein Homology CDS 1509941 1511083 . - 0 ID=cds-UUF03660.1;Parent=gene-NDY25_06685;Dbxref=NCBI_GP:UUF03660.1;Name=UUF03660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035887.1;locus_tag=NDY25_06685;product=pectate lyase;protein_id=UUF03660.1;transl_table=11 CP098604.1 Genbank gene 1511334 1512467 . - . ID=gene-NDY25_06690;Name=NDY25_06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06690 CP098604.1 Protein Homology CDS 1511334 1512467 . - 0 ID=cds-UUF03661.1;Parent=gene-NDY25_06690;Dbxref=NCBI_GP:UUF03661.1;Name=UUF03661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159791.1;locus_tag=NDY25_06690;product=pectate lyase;protein_id=UUF03661.1;transl_table=11 CP098604.1 Genbank gene 1512920 1513135 . - . ID=gene-NDY25_06695;Name=NDY25_06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06695 CP098604.1 GeneMarkS-2+ CDS 1512920 1513135 . - 0 ID=cds-UUF03662.1;Parent=gene-NDY25_06695;Dbxref=NCBI_GP:UUF03662.1;Name=UUF03662.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_06695;product=hypothetical protein;protein_id=UUF03662.1;transl_table=11 CP098604.1 Genbank gene 1513252 1513734 . - . ID=gene-NDY25_06700;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=NDY25_06700 CP098604.1 Protein Homology CDS 1513252 1513734 . - 0 ID=cds-UUF03663.1;Parent=gene-NDY25_06700;Dbxref=NCBI_GP:UUF03663.1;Name=UUF03663.1;Ontology_term=GO:0006464,GO:0042254,GO:0008999;gbkey=CDS;gene=rimI;go_function=ribosomal protein S5-alanine N-acetyltransferase activity|0008999||IEA;go_process=cellular protein modification process|0006464||IEA,ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019768432.1;locus_tag=NDY25_06700;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=UUF03663.1;transl_table=11 CP098604.1 Genbank gene 1513731 1514183 . - . ID=gene-NDY25_06705;Name=NDY25_06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06705 CP098604.1 Protein Homology CDS 1513731 1514183 . - 0 ID=cds-UUF04557.1;Parent=gene-NDY25_06705;Dbxref=NCBI_GP:UUF04557.1;Name=UUF04557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167047.1;locus_tag=NDY25_06705;product=alanine acetyltransferase;protein_id=UUF04557.1;transl_table=11 CP098604.1 Genbank gene 1514235 1515008 . - . ID=gene-NDY25_06710;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=NDY25_06710 CP098604.1 Protein Homology CDS 1514235 1515008 . - 0 ID=cds-UUF03664.1;Parent=gene-NDY25_06710;Dbxref=NCBI_GP:UUF03664.1;Name=UUF03664.1;Ontology_term=GO:0008654,GO:0003882;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-serine O-phosphatidyltransferase activity|0003882||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991773.1;locus_tag=NDY25_06710;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=UUF03664.1;transl_table=11 CP098604.1 Genbank gene 1515142 1515546 . + . ID=gene-NDY25_06715;Name=NDY25_06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06715 CP098604.1 Protein Homology CDS 1515142 1515546 . + 0 ID=cds-UUF03665.1;Parent=gene-NDY25_06715;Dbxref=NCBI_GP:UUF03665.1;Name=UUF03665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157648.1;locus_tag=NDY25_06715;product=DUF4124 domain-containing protein;protein_id=UUF03665.1;transl_table=11 CP098604.1 Genbank gene 1515551 1515629 . - . ID=gene-NDY25_06720;Name=NDY25_06720;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_06720 CP098604.1 cmsearch ncRNA 1515551 1515629 . - . ID=rna-NDY25_06720;Parent=gene-NDY25_06720;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06720;product=sX9 sRNA CP098604.1 cmsearch exon 1515551 1515629 . - . ID=exon-NDY25_06720-1;Parent=rna-NDY25_06720;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06720;product=sX9 sRNA CP098604.1 Genbank gene 1515942 1517636 . + . ID=gene-NDY25_06725;Name=NDY25_06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06725 CP098604.1 Protein Homology CDS 1515942 1517636 . + 0 ID=cds-UUF03666.1;Parent=gene-NDY25_06725;Dbxref=NCBI_GP:UUF03666.1;Name=UUF03666.1;Ontology_term=GO:0006418,GO:0006433,GO:0000166,GO:0002161,GO:0004812,GO:0004827,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA editing activity|0002161||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA,prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902894.1;locus_tag=NDY25_06725;product=proline--tRNA ligase;protein_id=UUF03666.1;transl_table=11 CP098604.1 Genbank gene 1517781 1518245 . + . ID=gene-NDY25_06730;Name=NDY25_06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06730 CP098604.1 Protein Homology CDS 1517781 1518245 . + 0 ID=cds-UUF03667.1;Parent=gene-NDY25_06730;Dbxref=NCBI_GP:UUF03667.1;Name=UUF03667.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970417.1;locus_tag=NDY25_06730;product=H-NS histone family protein;protein_id=UUF03667.1;transl_table=11 CP098604.1 Genbank gene 1518305 1519564 . - . ID=gene-NDY25_06735;Name=NDY25_06735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06735 CP098604.1 Protein Homology CDS 1518305 1519564 . - 0 ID=cds-UUF03668.1;Parent=gene-NDY25_06735;Dbxref=NCBI_GP:UUF03668.1;Name=UUF03668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506577.1;locus_tag=NDY25_06735;product=threonine/serine exporter family protein;protein_id=UUF03668.1;transl_table=11 CP098604.1 Genbank gene 1519768 1520880 . + . ID=gene-NDY25_06740;Name=NDY25_06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06740 CP098604.1 Protein Homology CDS 1519768 1520880 . + 0 ID=cds-UUF03669.1;Parent=gene-NDY25_06740;Dbxref=NCBI_GP:UUF03669.1;Name=UUF03669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813964.1;locus_tag=NDY25_06740;product=ABC transporter permease;protein_id=UUF03669.1;transl_table=11 CP098604.1 Genbank gene 1520974 1521810 . + . ID=gene-NDY25_06745;Name=NDY25_06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06745 CP098604.1 Protein Homology CDS 1520974 1521810 . + 0 ID=cds-UUF03670.1;Parent=gene-NDY25_06745;Dbxref=NCBI_GP:UUF03670.1;Name=UUF03670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969506.1;locus_tag=NDY25_06745;product=ABC transporter ATP-binding protein;protein_id=UUF03670.1;transl_table=11 CP098604.1 Genbank gene 1521813 1522739 . + . ID=gene-NDY25_06750;Name=NDY25_06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06750 CP098604.1 Protein Homology CDS 1521813 1522739 . + 0 ID=cds-UUF03671.1;Parent=gene-NDY25_06750;Dbxref=NCBI_GP:UUF03671.1;Name=UUF03671.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903957.1;locus_tag=NDY25_06750;product=MCE family protein;protein_id=UUF03671.1;transl_table=11 CP098604.1 Genbank gene 1522736 1523380 . + . ID=gene-NDY25_06755;Name=NDY25_06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06755 CP098604.1 Protein Homology CDS 1522736 1523380 . + 0 ID=cds-UUF03672.1;Parent=gene-NDY25_06755;Dbxref=NCBI_GP:UUF03672.1;Name=UUF03672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257687.1;locus_tag=NDY25_06755;product=ABC-type transport auxiliary lipoprotein family protein;protein_id=UUF03672.1;transl_table=11 CP098604.1 Genbank gene 1523403 1523479 . - . ID=gene-NDY25_06760;Name=NDY25_06760;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_06760 CP098604.1 cmsearch ncRNA 1523403 1523479 . - . ID=rna-NDY25_06760;Parent=gene-NDY25_06760;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06760;product=sX9 sRNA CP098604.1 cmsearch exon 1523403 1523479 . - . ID=exon-NDY25_06760-1;Parent=rna-NDY25_06760;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_06760;product=sX9 sRNA CP098604.1 Genbank gene 1524010 1524618 . - . ID=gene-NDY25_06765;Name=NDY25_06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06765 CP098604.1 Protein Homology CDS 1524010 1524618 . - 0 ID=cds-UUF03673.1;Parent=gene-NDY25_06765;Dbxref=NCBI_GP:UUF03673.1;Name=UUF03673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576968.1;locus_tag=NDY25_06765;product=alpha-ketoglutarate-dependent dioxygenase AlkB;protein_id=UUF03673.1;transl_table=11 CP098604.1 Genbank gene 1524745 1526394 . + . ID=gene-NDY25_06770;Name=NDY25_06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06770 CP098604.1 Protein Homology CDS 1524745 1526394 . + 0 ID=cds-UUF03674.1;Parent=gene-NDY25_06770;Dbxref=NCBI_GP:UUF03674.1;Name=UUF03674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348604.1;locus_tag=NDY25_06770;product=electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=UUF03674.1;transl_table=11 CP098604.1 Genbank gene 1526504 1529239 . + . ID=gene-NDY25_06775;Name=NDY25_06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06775 CP098604.1 Protein Homology CDS 1526504 1529239 . + 0 ID=cds-UUF04558.1;Parent=gene-NDY25_06775;Dbxref=NCBI_GP:UUF04558.1;Name=UUF04558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117099.1;locus_tag=NDY25_06775;product=polysaccharide biosynthesis protein;protein_id=UUF04558.1;transl_table=11 CP098604.1 Genbank gene 1529263 1529901 . - . ID=gene-NDY25_06780;Name=NDY25_06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06780 CP098604.1 Protein Homology CDS 1529263 1529901 . - 0 ID=cds-UUF03675.1;Parent=gene-NDY25_06780;Dbxref=NCBI_GP:UUF03675.1;Name=UUF03675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365618.1;locus_tag=NDY25_06780;product=CoA transferase subunit B;protein_id=UUF03675.1;transl_table=11 CP098604.1 Genbank gene 1529901 1530632 . - . ID=gene-NDY25_06785;Name=NDY25_06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06785 CP098604.1 Protein Homology CDS 1529901 1530632 . - 0 ID=cds-UUF03676.1;Parent=gene-NDY25_06785;Dbxref=NCBI_GP:UUF03676.1;Name=UUF03676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484175.1;locus_tag=NDY25_06785;product=CoA transferase subunit A;protein_id=UUF03676.1;transl_table=11 CP098604.1 Genbank gene 1530767 1532113 . + . ID=gene-NDY25_06790;Name=NDY25_06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06790 CP098604.1 Protein Homology CDS 1530767 1532113 . + 0 ID=cds-UUF03677.1;Parent=gene-NDY25_06790;Dbxref=NCBI_GP:UUF03677.1;Name=UUF03677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303601.1;locus_tag=NDY25_06790;product=phosphomannomutase;protein_id=UUF03677.1;transl_table=11 CP098604.1 Genbank gene 1532141 1533562 . + . ID=gene-NDY25_06795;Name=NDY25_06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06795 CP098604.1 Protein Homology CDS 1532141 1533562 . + 0 ID=cds-UUF04559.1;Parent=gene-NDY25_06795;Dbxref=NCBI_GP:UUF04559.1;Name=UUF04559.1;Ontology_term=GO:0009103,GO:0004476,GO:0008905;gbkey=CDS;go_function=mannose-6-phosphate isomerase activity|0004476||IEA,mannose-phosphate guanylyltransferase activity|0008905||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903949.1;locus_tag=NDY25_06795;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=UUF04559.1;transl_table=11 CP098604.1 Genbank gene 1533684 1534592 . - . ID=gene-NDY25_06800;Name=rfbD;gbkey=Gene;gene=rfbD;gene_biotype=protein_coding;locus_tag=NDY25_06800 CP098604.1 Protein Homology CDS 1533684 1534592 . - 0 ID=cds-UUF03678.1;Parent=gene-NDY25_06800;Dbxref=NCBI_GP:UUF03678.1;Name=UUF03678.1;Ontology_term=GO:0009243,GO:0019305,GO:0008831;gbkey=CDS;gene=rfbD;go_function=dTDP-4-dehydrorhamnose reductase activity|0008831||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446096.1;locus_tag=NDY25_06800;product=dTDP-4-dehydrorhamnose reductase;protein_id=UUF03678.1;transl_table=11 CP098604.1 Genbank gene 1534589 1535146 . - . ID=gene-NDY25_06805;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=NDY25_06805 CP098604.1 Protein Homology CDS 1534589 1535146 . - 0 ID=cds-UUF03679.1;Parent=gene-NDY25_06805;Dbxref=NCBI_GP:UUF03679.1;Name=UUF03679.1;Ontology_term=GO:0009243,GO:0019305,GO:0008830;gbkey=CDS;gene=rfbC;go_function=dTDP-4-dehydrorhamnose 3%2C5-epimerase activity|0008830||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377788.1;locus_tag=NDY25_06805;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=UUF03679.1;transl_table=11 CP098604.1 Genbank gene 1535143 1536030 . - . ID=gene-NDY25_06810;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=NDY25_06810 CP098604.1 Protein Homology CDS 1535143 1536030 . - 0 ID=cds-UUF03680.1;Parent=gene-NDY25_06810;Dbxref=NCBI_GP:UUF03680.1;Name=UUF03680.1;Ontology_term=GO:0009243,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903936.1;locus_tag=NDY25_06810;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=UUF03680.1;transl_table=11 CP098604.1 Genbank gene 1536084 1537139 . - . ID=gene-NDY25_06815;Name=rfbB;gbkey=Gene;gene=rfbB;gene_biotype=protein_coding;locus_tag=NDY25_06815 CP098604.1 Protein Homology CDS 1536084 1537139 . - 0 ID=cds-UUF03681.1;Parent=gene-NDY25_06815;Dbxref=NCBI_GP:UUF03681.1;Name=UUF03681.1;Ontology_term=GO:0009243,GO:0019305,GO:0008460;gbkey=CDS;gene=rfbB;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407612.1;locus_tag=NDY25_06815;product=dTDP-glucose 4%2C6-dehydratase;protein_id=UUF03681.1;transl_table=11 CP098604.1 Genbank gene 1537364 1538110 . + . ID=gene-NDY25_06820;Name=NDY25_06820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06820 CP098604.1 Protein Homology CDS 1537364 1538110 . + 0 ID=cds-UUF03682.1;Parent=gene-NDY25_06820;Dbxref=NCBI_GP:UUF03682.1;Name=UUF03682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182580.1;locus_tag=NDY25_06820;product=electron transfer flavoprotein subunit beta/FixA family protein;protein_id=UUF03682.1;transl_table=11 CP098604.1 Genbank gene 1538110 1539054 . + . ID=gene-NDY25_06825;Name=NDY25_06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06825 CP098604.1 Protein Homology CDS 1538110 1539054 . + 0 ID=cds-UUF03683.1;Parent=gene-NDY25_06825;Dbxref=NCBI_GP:UUF03683.1;Name=UUF03683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158256.1;locus_tag=NDY25_06825;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=UUF03683.1;transl_table=11 CP098604.1 Genbank gene 1539262 1539960 . + . ID=gene-NDY25_06830;Name=NDY25_06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06830 CP098604.1 Protein Homology CDS 1539262 1539960 . + 0 ID=cds-UUF03684.1;Parent=gene-NDY25_06830;Dbxref=NCBI_GP:UUF03684.1;Name=UUF03684.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920793.1;locus_tag=NDY25_06830;product=NAD-dependent epimerase/dehydratase family protein;protein_id=UUF03684.1;transl_table=11 CP098604.1 Genbank gene 1539950 1540900 . + . ID=gene-NDY25_06835;Name=NDY25_06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06835 CP098604.1 Protein Homology CDS 1539950 1540900 . + 0 ID=cds-UUF03685.1;Parent=gene-NDY25_06835;Dbxref=NCBI_GP:UUF03685.1;Name=UUF03685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814001.1;locus_tag=NDY25_06835;product=glycosyltransferase family 2 protein;protein_id=UUF03685.1;transl_table=11 CP098604.1 Genbank gene 1540897 1541313 . + . ID=gene-NDY25_06840;Name=NDY25_06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06840 CP098604.1 Protein Homology CDS 1540897 1541313 . + 0 ID=cds-UUF03686.1;Parent=gene-NDY25_06840;Dbxref=NCBI_GP:UUF03686.1;Name=UUF03686.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016060.2;locus_tag=NDY25_06840;product=GtrA family protein;protein_id=UUF03686.1;transl_table=11 CP098604.1 Genbank gene 1541991 1543541 . + . ID=gene-NDY25_06845;Name=NDY25_06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06845 CP098604.1 GeneMarkS-2+ CDS 1541991 1543541 . + 0 ID=cds-UUF03687.1;Parent=gene-NDY25_06845;Dbxref=NCBI_GP:UUF03687.1;Name=UUF03687.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_06845;product=hypothetical protein;protein_id=UUF03687.1;transl_table=11 CP098604.1 Genbank gene 1543699 1544145 . + . ID=gene-NDY25_06850;Name=NDY25_06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06850 CP098604.1 GeneMarkS-2+ CDS 1543699 1544145 . + 0 ID=cds-UUF03688.1;Parent=gene-NDY25_06850;Dbxref=NCBI_GP:UUF03688.1;Name=UUF03688.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_06850;product=hypothetical protein;protein_id=UUF03688.1;transl_table=11 CP098604.1 Genbank gene 1544436 1545377 . - . ID=gene-NDY25_06855;Name=NDY25_06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06855 CP098604.1 Protein Homology CDS 1544436 1545377 . - 0 ID=cds-UUF03689.1;Parent=gene-NDY25_06855;Dbxref=NCBI_GP:UUF03689.1;Name=UUF03689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439286.1;locus_tag=NDY25_06855;product=GDP-mannose 4%2C6-dehydratase;protein_id=UUF03689.1;transl_table=11 CP098604.1 Genbank gene 1545361 1546395 . - . ID=gene-NDY25_06860;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=NDY25_06860 CP098604.1 Protein Homology CDS 1545361 1546395 . - 0 ID=cds-UUF03690.1;Parent=gene-NDY25_06860;Dbxref=NCBI_GP:UUF03690.1;Name=UUF03690.1;Ontology_term=GO:0000271,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019042067.1;locus_tag=NDY25_06860;product=GDP-mannose 4%2C6-dehydratase;protein_id=UUF03690.1;transl_table=11 CP098604.1 Genbank gene 1546471 1547115 . - . ID=gene-NDY25_06865;Name=NDY25_06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06865 CP098604.1 Protein Homology CDS 1546471 1547115 . - 0 ID=cds-UUF03691.1;Parent=gene-NDY25_06865;Dbxref=NCBI_GP:UUF03691.1;Name=UUF03691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449656.1;locus_tag=NDY25_06865;product=glycosyltransferase;protein_id=UUF03691.1;transl_table=11 CP098604.1 Genbank gene 1547112 1548863 . - . ID=gene-NDY25_06870;Name=NDY25_06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06870 CP098604.1 Protein Homology CDS 1547112 1548863 . - 0 ID=cds-UUF04560.1;Parent=gene-NDY25_06870;Dbxref=NCBI_GP:UUF04560.1;Name=UUF04560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814022.1;locus_tag=NDY25_06870;product=glycosyltransferase;protein_id=UUF04560.1;transl_table=11 CP098604.1 Genbank gene 1548884 1549945 . - . ID=gene-NDY25_06875;Name=NDY25_06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06875 CP098604.1 Protein Homology CDS 1548884 1549945 . - 0 ID=cds-UUF03692.1;Parent=gene-NDY25_06875;Dbxref=NCBI_GP:UUF03692.1;Name=UUF03692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439290.1;locus_tag=NDY25_06875;product=glycosyltransferase;protein_id=UUF03692.1;transl_table=11 CP098604.1 Genbank gene 1549997 1552390 . - . ID=gene-NDY25_06880;Name=NDY25_06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06880 CP098604.1 Protein Homology CDS 1549997 1552390 . - 0 ID=cds-UUF03693.1;Parent=gene-NDY25_06880;Dbxref=NCBI_GP:UUF03693.1;Name=UUF03693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814026.1;locus_tag=NDY25_06880;product=methyltransferase domain-containing protein;protein_id=UUF03693.1;transl_table=11 CP098604.1 Genbank gene 1552431 1553717 . - . ID=gene-NDY25_06885;Name=NDY25_06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06885 CP098604.1 Protein Homology CDS 1552431 1553717 . - 0 ID=cds-UUF03694.1;Parent=gene-NDY25_06885;Dbxref=NCBI_GP:UUF03694.1;Name=UUF03694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991814.1;locus_tag=NDY25_06885;product=ABC transporter ATP-binding protein;protein_id=UUF03694.1;transl_table=11 CP098604.1 Genbank gene 1553714 1554499 . - . ID=gene-NDY25_06890;Name=NDY25_06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06890 CP098604.1 Protein Homology CDS 1553714 1554499 . - 0 ID=cds-UUF04561.1;Parent=gene-NDY25_06890;Dbxref=NCBI_GP:UUF04561.1;Name=UUF04561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814028.1;locus_tag=NDY25_06890;product=ABC transporter permease;protein_id=UUF04561.1;transl_table=11 CP098604.1 Genbank gene 1554599 1555981 . - . ID=gene-NDY25_06895;Name=NDY25_06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06895 CP098604.1 Protein Homology CDS 1554599 1555981 . - 0 ID=cds-UUF03695.1;Parent=gene-NDY25_06895;Dbxref=NCBI_GP:UUF03695.1;Name=UUF03695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814029.1;locus_tag=NDY25_06895;product=glycosyltransferase family 4 protein;protein_id=UUF03695.1;transl_table=11 CP098604.1 Genbank pseudogene 1555978 1557176 . - . ID=gene-NDY25_06900;Name=NDY25_06900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_06900;pseudo=true CP098604.1 Protein Homology CDS 1555978 1557176 . - 0 ID=cds-NDY25_06900;Parent=gene-NDY25_06900;Note=frameshifted;Ontology_term=GO:0019346,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449649.1;locus_tag=NDY25_06900;product=cystathionine gamma-synthase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1557266 1558636 . - . ID=gene-NDY25_06905;Name=NDY25_06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06905 CP098604.1 Protein Homology CDS 1557266 1558636 . - 0 ID=cds-UUF03696.1;Parent=gene-NDY25_06905;Dbxref=NCBI_GP:UUF03696.1;Name=UUF03696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157251.1;locus_tag=NDY25_06905;product=pyridoxal-phosphate dependent enzyme;protein_id=UUF03696.1;transl_table=11 CP098604.1 Genbank gene 1558855 1559073 . - . ID=gene-NDY25_06910;Name=NDY25_06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06910 CP098604.1 Protein Homology CDS 1558855 1559073 . - 0 ID=cds-UUF03697.1;Parent=gene-NDY25_06910;Dbxref=NCBI_GP:UUF03697.1;Name=UUF03697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237985.1;locus_tag=NDY25_06910;product=YdcH family protein;protein_id=UUF03697.1;transl_table=11 CP098604.1 Genbank gene 1559410 1560300 . - . ID=gene-NDY25_06915;Name=NDY25_06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06915 CP098604.1 Protein Homology CDS 1559410 1560300 . - 0 ID=cds-UUF03698.1;Parent=gene-NDY25_06915;Dbxref=NCBI_GP:UUF03698.1;Name=UUF03698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161845.1;locus_tag=NDY25_06915;product=hypothetical protein;protein_id=UUF03698.1;transl_table=11 CP098604.1 Genbank gene 1560297 1560596 . - . ID=gene-NDY25_06920;Name=NDY25_06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06920 CP098604.1 Protein Homology CDS 1560297 1560596 . - 0 ID=cds-UUF04562.1;Parent=gene-NDY25_06920;Dbxref=NCBI_GP:UUF04562.1;Name=UUF04562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851454.1;locus_tag=NDY25_06920;product=DUF4398 domain-containing protein;protein_id=UUF04562.1;transl_table=11 CP098604.1 Genbank gene 1560779 1561912 . + . ID=gene-NDY25_06925;Name=NDY25_06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06925 CP098604.1 Protein Homology CDS 1560779 1561912 . + 0 ID=cds-UUF03699.1;Parent=gene-NDY25_06925;Dbxref=NCBI_GP:UUF03699.1;Name=UUF03699.1;Ontology_term=GO:0043107,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=type IV pilus-dependent motility|0043107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914752.1;locus_tag=NDY25_06925;product=PilT/PilU family type 4a pilus ATPase;protein_id=UUF03699.1;transl_table=11 CP098604.1 Genbank gene 1562433 1563095 . - . ID=gene-NDY25_06930;Name=maiA;gbkey=Gene;gene=maiA;gene_biotype=protein_coding;locus_tag=NDY25_06930 CP098604.1 Protein Homology CDS 1562433 1563095 . - 0 ID=cds-UUF03700.1;Parent=gene-NDY25_06930;Dbxref=NCBI_GP:UUF03700.1;Name=UUF03700.1;Ontology_term=GO:0006559,GO:0006572,GO:0016034;gbkey=CDS;gene=maiA;go_function=maleylacetoacetate isomerase activity|0016034||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301779.1;locus_tag=NDY25_06930;product=maleylacetoacetate isomerase;protein_id=UUF03700.1;transl_table=11 CP098604.1 Genbank gene 1563151 1564209 . - . ID=gene-NDY25_06935;Name=NDY25_06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06935 CP098604.1 Protein Homology CDS 1563151 1564209 . - 0 ID=cds-UUF04563.1;Parent=gene-NDY25_06935;Dbxref=NCBI_GP:UUF04563.1;Name=UUF04563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160204.1;locus_tag=NDY25_06935;product=fumarylacetoacetate hydrolase family protein;protein_id=UUF04563.1;transl_table=11 CP098604.1 Genbank gene 1564518 1565906 . + . ID=gene-NDY25_06940;Name=NDY25_06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06940 CP098604.1 Protein Homology CDS 1564518 1565906 . + 0 ID=cds-UUF03701.1;Parent=gene-NDY25_06940;Dbxref=NCBI_GP:UUF03701.1;Name=UUF03701.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446112.1;locus_tag=NDY25_06940;product=DEAD/DEAH box helicase;protein_id=UUF03701.1;transl_table=11 CP098604.1 Genbank gene 1566094 1568379 . - . ID=gene-NDY25_06945;Name=NDY25_06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06945 CP098604.1 Protein Homology CDS 1566094 1568379 . - 0 ID=cds-UUF03702.1;Parent=gene-NDY25_06945;Dbxref=NCBI_GP:UUF03702.1;Name=UUF03702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849431.1;locus_tag=NDY25_06945;product=M28 family peptidase;protein_id=UUF03702.1;transl_table=11 CP098604.1 Genbank gene 1568491 1571124 . - . ID=gene-NDY25_06950;Name=NDY25_06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06950 CP098604.1 Protein Homology CDS 1568491 1571124 . - 0 ID=cds-UUF03703.1;Parent=gene-NDY25_06950;Dbxref=NCBI_GP:UUF03703.1;Name=UUF03703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849432.1;locus_tag=NDY25_06950;product=TonB-dependent receptor;protein_id=UUF03703.1;transl_table=11 CP098604.1 Genbank gene 1571390 1571743 . + . ID=gene-NDY25_06955;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=NDY25_06955 CP098604.1 Protein Homology CDS 1571390 1571743 . + 0 ID=cds-UUF03704.1;Parent=gene-NDY25_06955;Dbxref=NCBI_GP:UUF03704.1;Name=UUF03704.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900974.1;locus_tag=NDY25_06955;product=6-carboxytetrahydropterin synthase QueD;protein_id=UUF03704.1;transl_table=11 CP098604.1 Genbank gene 1571937 1572299 . + . ID=gene-NDY25_06960;Name=NDY25_06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06960 CP098604.1 Protein Homology CDS 1571937 1572299 . + 0 ID=cds-UUF03705.1;Parent=gene-NDY25_06960;Dbxref=NCBI_GP:UUF03705.1;Name=UUF03705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158777.1;locus_tag=NDY25_06960;product=phasin family protein;protein_id=UUF03705.1;transl_table=11 CP098604.1 Genbank gene 1572499 1573002 . - . ID=gene-NDY25_06965;Name=NDY25_06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06965 CP098604.1 Protein Homology CDS 1572499 1573002 . - 0 ID=cds-UUF03706.1;Parent=gene-NDY25_06965;Dbxref=NCBI_GP:UUF03706.1;Name=UUF03706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003153636.1;locus_tag=NDY25_06965;product=PIN domain-containing protein;protein_id=UUF03706.1;transl_table=11 CP098604.1 Genbank gene 1573071 1573538 . - . ID=gene-NDY25_06970;Name=NDY25_06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06970 CP098604.1 Protein Homology CDS 1573071 1573538 . - 0 ID=cds-UUF03707.1;Parent=gene-NDY25_06970;Dbxref=NCBI_GP:UUF03707.1;Name=UUF03707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003050245.1;locus_tag=NDY25_06970;product=helix-turn-helix domain-containing protein;protein_id=UUF03707.1;transl_table=11 CP098604.1 Genbank gene 1573677 1574351 . - . ID=gene-NDY25_06975;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=NDY25_06975 CP098604.1 Protein Homology CDS 1573677 1574351 . - 0 ID=cds-UUF03708.1;Parent=gene-NDY25_06975;Dbxref=NCBI_GP:UUF03708.1;Name=UUF03708.1;Ontology_term=GO:0009102,GO:0004141;gbkey=CDS;gene=bioD;go_function=dethiobiotin synthase activity|0004141||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157245.1;locus_tag=NDY25_06975;product=dethiobiotin synthase;protein_id=UUF03708.1;transl_table=11 CP098604.1 Genbank gene 1574470 1574952 . + . ID=gene-NDY25_06980;Name=NDY25_06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06980 CP098604.1 Protein Homology CDS 1574470 1574952 . + 0 ID=cds-UUF03709.1;Parent=gene-NDY25_06980;Dbxref=NCBI_GP:UUF03709.1;Name=UUF03709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506539.1;locus_tag=NDY25_06980;product=GAF domain-containing protein;protein_id=UUF03709.1;transl_table=11 CP098604.1 Genbank gene 1574949 1575341 . + . ID=gene-NDY25_06985;Name=NDY25_06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06985 CP098604.1 Protein Homology CDS 1574949 1575341 . + 0 ID=cds-UUF03710.1;Parent=gene-NDY25_06985;Dbxref=NCBI_GP:UUF03710.1;Name=UUF03710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926569.1;locus_tag=NDY25_06985;product=TfoX/Sxy family protein;protein_id=UUF03710.1;transl_table=11 CP098604.1 Genbank gene 1575454 1576404 . - . ID=gene-NDY25_06990;Name=NDY25_06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06990 CP098604.1 Protein Homology CDS 1575454 1576404 . - 0 ID=cds-UUF03711.1;Parent=gene-NDY25_06990;Dbxref=NCBI_GP:UUF03711.1;Name=UUF03711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472726.1;locus_tag=NDY25_06990;product=alpha/beta hydrolase-fold protein;protein_id=UUF03711.1;transl_table=11 CP098604.1 Genbank gene 1576461 1578704 . - . ID=gene-NDY25_06995;Name=NDY25_06995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_06995 CP098604.1 Protein Homology CDS 1576461 1578704 . - 0 ID=cds-UUF04564.1;Parent=gene-NDY25_06995;Dbxref=NCBI_GP:UUF04564.1;Name=UUF04564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926575.1;locus_tag=NDY25_06995;product=TonB-dependent siderophore receptor;protein_id=UUF04564.1;transl_table=11 CP098604.1 Genbank gene 1578910 1579560 . - . ID=gene-NDY25_07000;Name=NDY25_07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07000 CP098604.1 Protein Homology CDS 1578910 1579560 . - 0 ID=cds-UUF03712.1;Parent=gene-NDY25_07000;Dbxref=NCBI_GP:UUF03712.1;Name=UUF03712.1;Ontology_term=GO:0005975,GO:0008967;gbkey=CDS;go_function=phosphoglycolate phosphatase activity|0008967||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348635.1;locus_tag=NDY25_07000;product=phosphoglycolate phosphatase;protein_id=UUF03712.1;transl_table=11 CP098604.1 Genbank gene 1579744 1580823 . - . ID=gene-NDY25_07005;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=NDY25_07005 CP098604.1 Protein Homology CDS 1579744 1580823 . - 0 ID=cds-UUF03713.1;Parent=gene-NDY25_07005;Dbxref=NCBI_GP:UUF03713.1;Name=UUF03713.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157240.1;locus_tag=NDY25_07005;product=DNA polymerase IV;protein_id=UUF03713.1;transl_table=11 CP098604.1 Genbank gene 1581029 1581544 . + . ID=gene-NDY25_07010;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=NDY25_07010 CP098604.1 Protein Homology CDS 1581029 1581544 . + 0 ID=cds-UUF03714.1;Parent=gene-NDY25_07010;Dbxref=NCBI_GP:UUF03714.1;Name=UUF03714.1;Ontology_term=GO:0019171;gbkey=CDS;gene=fabA;go_function=3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035827.1;locus_tag=NDY25_07010;product=3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA;protein_id=UUF03714.1;transl_table=11 CP098604.1 Genbank gene 1581544 1582752 . + . ID=gene-NDY25_07015;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;locus_tag=NDY25_07015 CP098604.1 Protein Homology CDS 1581544 1582752 . + 0 ID=cds-UUF03715.1;Parent=gene-NDY25_07015;Dbxref=NCBI_GP:UUF03715.1;Name=UUF03715.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabB;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237990.1;locus_tag=NDY25_07015;product=beta-ketoacyl-ACP synthase I;protein_id=UUF03715.1;transl_table=11 CP098604.1 Genbank gene 1583030 1583485 . + . ID=gene-NDY25_07020;Name=NDY25_07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07020 CP098604.1 Protein Homology CDS 1583030 1583485 . + 0 ID=cds-UUF03716.1;Parent=gene-NDY25_07020;Dbxref=NCBI_GP:UUF03716.1;Name=UUF03716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814066.1;locus_tag=NDY25_07020;product=endonuclease;protein_id=UUF03716.1;transl_table=11 CP098604.1 Genbank gene 1583656 1585680 . - . ID=gene-NDY25_07025;Name=NDY25_07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07025 CP098604.1 Protein Homology CDS 1583656 1585680 . - 0 ID=cds-UUF03717.1;Parent=gene-NDY25_07025;Dbxref=NCBI_GP:UUF03717.1;Name=UUF03717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304766.1;locus_tag=NDY25_07025;product=M3 family metallopeptidase;protein_id=UUF03717.1;transl_table=11 CP098604.1 Genbank gene 1585797 1586900 . - . ID=gene-NDY25_07030;Name=NDY25_07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07030 CP098604.1 Protein Homology CDS 1585797 1586900 . - 0 ID=cds-UUF03718.1;Parent=gene-NDY25_07030;Dbxref=NCBI_GP:UUF03718.1;Name=UUF03718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304765.1;locus_tag=NDY25_07030;product=PLP-dependent cysteine synthase family protein;protein_id=UUF03718.1;transl_table=11 CP098604.1 Genbank gene 1587034 1587435 . + . ID=gene-NDY25_07035;Name=NDY25_07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07035 CP098604.1 Protein Homology CDS 1587034 1587435 . + 0 ID=cds-UUF03719.1;Parent=gene-NDY25_07035;Dbxref=NCBI_GP:UUF03719.1;Name=UUF03719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377717.1;locus_tag=NDY25_07035;product=CopL family metal-binding regulatory protein;protein_id=UUF03719.1;transl_table=11 CP098604.1 Genbank gene 1587518 1589353 . + . ID=gene-NDY25_07040;Name=NDY25_07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07040 CP098604.1 Protein Homology CDS 1587518 1589353 . + 0 ID=cds-UUF04565.1;Parent=gene-NDY25_07040;Dbxref=NCBI_GP:UUF04565.1;Name=UUF04565.1;Ontology_term=GO:0006825,GO:0005375,GO:0005507;gbkey=CDS;go_function=copper ion transmembrane transporter activity|0005375||IEA,copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091111.1;locus_tag=NDY25_07040;product=copper resistance system multicopper oxidase;protein_id=UUF04565.1;transl_table=11 CP098604.1 Genbank gene 1589350 1590690 . + . ID=gene-NDY25_07045;Name=NDY25_07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07045 CP098604.1 Protein Homology CDS 1589350 1590690 . + 0 ID=cds-UUF03720.1;Parent=gene-NDY25_07045;Dbxref=NCBI_GP:UUF03720.1;Name=UUF03720.1;Ontology_term=GO:0006878,GO:0005507,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=copper ion binding|0005507||IEA;go_process=cellular copper ion homeostasis|0006878||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450446.1;locus_tag=NDY25_07045;product=copper resistance protein B;protein_id=UUF03720.1;transl_table=11 CP098604.1 Genbank gene 1590912 1591436 . + . ID=gene-NDY25_07050;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=NDY25_07050 CP098604.1 Protein Homology CDS 1590912 1591436 . + 0 ID=cds-UUF03721.1;Parent=gene-NDY25_07050;Dbxref=NCBI_GP:UUF03721.1;Name=UUF03721.1;Ontology_term=GO:0005975,GO:0051596,GO:0004462;gbkey=CDS;gene=gloA;go_function=lactoylglutathione lyase activity|0004462||IEA;go_process=carbohydrate metabolic process|0005975||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849953.1;locus_tag=NDY25_07050;product=lactoylglutathione lyase;protein_id=UUF03721.1;transl_table=11 CP098604.1 Genbank gene 1591609 1592751 . - . ID=gene-NDY25_07055;Name=NDY25_07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07055 CP098604.1 Protein Homology CDS 1591609 1592751 . - 0 ID=cds-UUF03722.1;Parent=gene-NDY25_07055;Dbxref=NCBI_GP:UUF03722.1;Name=UUF03722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173703.1;locus_tag=NDY25_07055;product=hypothetical protein;protein_id=UUF03722.1;transl_table=11 CP098604.1 Genbank gene 1592981 1593454 . - . ID=gene-NDY25_07060;Name=NDY25_07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07060 CP098604.1 Protein Homology CDS 1592981 1593454 . - 0 ID=cds-UUF03723.1;Parent=gene-NDY25_07060;Dbxref=NCBI_GP:UUF03723.1;Name=UUF03723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506523.1;locus_tag=NDY25_07060;product=hypothetical protein;protein_id=UUF03723.1;transl_table=11 CP098604.1 Genbank gene 1594191 1595198 . + . ID=gene-NDY25_07065;Name=NDY25_07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07065 CP098604.1 GeneMarkS-2+ CDS 1594191 1595198 . + 0 ID=cds-UUF03724.1;Parent=gene-NDY25_07065;Dbxref=NCBI_GP:UUF03724.1;Name=UUF03724.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07065;product=hypothetical protein;protein_id=UUF03724.1;transl_table=11 CP098604.1 Genbank gene 1595168 1596358 . + . ID=gene-NDY25_07070;Name=NDY25_07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07070 CP098604.1 GeneMarkS-2+ CDS 1595168 1596358 . + 0 ID=cds-UUF03725.1;Parent=gene-NDY25_07070;Dbxref=NCBI_GP:UUF03725.1;Name=UUF03725.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07070;product=hypothetical protein;protein_id=UUF03725.1;transl_table=11 CP098604.1 Genbank gene 1596650 1598479 . - . ID=gene-NDY25_07075;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=NDY25_07075 CP098604.1 Protein Homology CDS 1596650 1598479 . - 0 ID=cds-UUF03726.1;Parent=gene-NDY25_07075;Dbxref=NCBI_GP:UUF03726.1;Name=UUF03726.1;Ontology_term=GO:0006040,GO:0009252,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159863.1;locus_tag=NDY25_07075;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=UUF03726.1;transl_table=11 CP098604.1 Genbank gene 1598684 1599955 . + . ID=gene-NDY25_07080;Name=NDY25_07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07080 CP098604.1 Protein Homology CDS 1598684 1599955 . + 0 ID=cds-UUF03727.1;Parent=gene-NDY25_07080;Dbxref=NCBI_GP:UUF03727.1;Name=UUF03727.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157227.1;locus_tag=NDY25_07080;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF03727.1;transl_table=11 CP098604.1 Genbank gene 1600037 1600756 . + . ID=gene-NDY25_07085;Name=NDY25_07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07085 CP098604.1 Protein Homology CDS 1600037 1600756 . + 0 ID=cds-UUF03728.1;Parent=gene-NDY25_07085;Dbxref=NCBI_GP:UUF03728.1;Name=UUF03728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157226.1;locus_tag=NDY25_07085;product=ABC transporter ATP-binding protein;protein_id=UUF03728.1;transl_table=11 CP098604.1 Genbank gene 1600769 1602067 . + . ID=gene-NDY25_07090;Name=NDY25_07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07090 CP098604.1 Protein Homology CDS 1600769 1602067 . + 0 ID=cds-UUF03729.1;Parent=gene-NDY25_07090;Dbxref=NCBI_GP:UUF03729.1;Name=UUF03729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439307.1;locus_tag=NDY25_07090;product=ABC transporter permease;protein_id=UUF03729.1;transl_table=11 CP098604.1 Genbank gene 1602131 1603339 . + . ID=gene-NDY25_07095;Name=NDY25_07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07095 CP098604.1 Protein Homology CDS 1602131 1603339 . + 0 ID=cds-UUF03730.1;Parent=gene-NDY25_07095;Dbxref=NCBI_GP:UUF03730.1;Name=UUF03730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171469.1;locus_tag=NDY25_07095;product=ABC transporter permease;protein_id=UUF03730.1;transl_table=11 CP098604.1 Genbank pseudogene 1603747 1605088 . + . ID=gene-NDY25_07100;Name=NDY25_07100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_07100;pseudo=true CP098604.1 Protein Homology CDS 1603747 1605088 . + 0 ID=cds-NDY25_07100;Parent=gene-NDY25_07100;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901003.1;locus_tag=NDY25_07100;product=sigma-54 dependent transcriptional regulator;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1605097 1606449 . + . ID=gene-NDY25_07105;Name=NDY25_07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07105 CP098604.1 Protein Homology CDS 1605097 1606449 . + 0 ID=cds-UUF03731.1;Parent=gene-NDY25_07105;Dbxref=NCBI_GP:UUF03731.1;Name=UUF03731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450433.1;locus_tag=NDY25_07105;product=HAMP domain-containing histidine kinase;protein_id=UUF03731.1;transl_table=11 CP098604.1 Genbank gene 1606490 1607455 . - . ID=gene-NDY25_07110;Name=NDY25_07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07110 CP098604.1 Protein Homology CDS 1606490 1607455 . - 0 ID=cds-UUF03732.1;Parent=gene-NDY25_07110;Dbxref=NCBI_GP:UUF03732.1;Name=UUF03732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450432.1;locus_tag=NDY25_07110;product=right-handed parallel beta-helix repeat-containing protein;protein_id=UUF03732.1;transl_table=11 CP098604.1 Genbank gene 1607562 1608926 . - . ID=gene-NDY25_07115;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=NDY25_07115 CP098604.1 Protein Homology CDS 1607562 1608926 . - 0 ID=cds-UUF03733.1;Parent=gene-NDY25_07115;Dbxref=NCBI_GP:UUF03733.1;Name=UUF03733.1;Ontology_term=GO:0009103,GO:0009252,GO:0003977,GO:0019134,GO:0005737;gbkey=CDS;gene=glmU;go_component=cytoplasm|0005737||IEA;go_function=UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407581.1;locus_tag=NDY25_07115;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=UUF03733.1;transl_table=11 CP098604.1 Genbank gene 1609071 1609454 . + . ID=gene-NDY25_07120;Name=NDY25_07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07120 CP098604.1 Protein Homology CDS 1609071 1609454 . + 0 ID=cds-UUF03734.1;Parent=gene-NDY25_07120;Dbxref=NCBI_GP:UUF03734.1;Name=UUF03734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484015.1;locus_tag=NDY25_07120;product=GtrA family protein;protein_id=UUF03734.1;transl_table=11 CP098604.1 Genbank gene 1609643 1610212 . - . ID=gene-NDY25_07125;Name=NDY25_07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07125 CP098604.1 Protein Homology CDS 1609643 1610212 . - 0 ID=cds-UUF03735.1;Parent=gene-NDY25_07125;Dbxref=NCBI_GP:UUF03735.1;Name=UUF03735.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450429.1;locus_tag=NDY25_07125;product=chorismate mutase;protein_id=UUF03735.1;transl_table=11 CP098604.1 Genbank gene 1610446 1610868 . - . ID=gene-NDY25_07130;Name=NDY25_07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07130 CP098604.1 Protein Homology CDS 1610446 1610868 . - 0 ID=cds-UUF03736.1;Parent=gene-NDY25_07130;Dbxref=NCBI_GP:UUF03736.1;Name=UUF03736.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407577.1;locus_tag=NDY25_07130;product=F0F1 ATP synthase subunit epsilon;protein_id=UUF03736.1;transl_table=11 CP098604.1 Genbank gene 1611041 1612447 . - . ID=gene-NDY25_07135;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=NDY25_07135 CP098604.1 Protein Homology CDS 1611041 1612447 . - 0 ID=cds-UUF03737.1;Parent=gene-NDY25_07135;Dbxref=NCBI_GP:UUF03737.1;Name=UUF03737.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpD;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504697.1;locus_tag=NDY25_07135;product=F0F1 ATP synthase subunit beta;protein_id=UUF03737.1;transl_table=11 CP098604.1 Genbank gene 1612570 1613433 . - . ID=gene-NDY25_07140;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=NDY25_07140 CP098604.1 Protein Homology CDS 1612570 1613433 . - 0 ID=cds-UUF03738.1;Parent=gene-NDY25_07140;Dbxref=NCBI_GP:UUF03738.1;Name=UUF03738.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371995.1;locus_tag=NDY25_07140;product=F0F1 ATP synthase subunit gamma;protein_id=UUF03738.1;transl_table=11 CP098604.1 Genbank gene 1613547 1615094 . - . ID=gene-NDY25_07145;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=NDY25_07145 CP098604.1 Protein Homology CDS 1613547 1615094 . - 0 ID=cds-UUF03739.1;Parent=gene-NDY25_07145;Dbxref=NCBI_GP:UUF03739.1;Name=UUF03739.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpA;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161761.1;locus_tag=NDY25_07145;product=F0F1 ATP synthase subunit alpha;protein_id=UUF03739.1;transl_table=11 CP098604.1 Genbank gene 1615142 1615669 . - . ID=gene-NDY25_07150;Name=NDY25_07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07150 CP098604.1 Protein Homology CDS 1615142 1615669 . - 0 ID=cds-UUF03740.1;Parent=gene-NDY25_07150;Dbxref=NCBI_GP:UUF03740.1;Name=UUF03740.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304550.1;locus_tag=NDY25_07150;product=F0F1 ATP synthase subunit delta;protein_id=UUF03740.1;transl_table=11 CP098604.1 Genbank gene 1615673 1616143 . - . ID=gene-NDY25_07155;Name=NDY25_07155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07155 CP098604.1 Protein Homology CDS 1615673 1616143 . - 0 ID=cds-UUF03741.1;Parent=gene-NDY25_07155;Dbxref=NCBI_GP:UUF03741.1;Name=UUF03741.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901014.1;locus_tag=NDY25_07155;product=F0F1 ATP synthase subunit B;protein_id=UUF03741.1;transl_table=11 CP098604.1 Genbank gene 1616257 1616559 . - . ID=gene-NDY25_07160;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=NDY25_07160 CP098604.1 Protein Homology CDS 1616257 1616559 . - 0 ID=cds-UUF03742.1;Parent=gene-NDY25_07160;Dbxref=NCBI_GP:UUF03742.1;Name=UUF03742.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814105.1;locus_tag=NDY25_07160;product=F0F1 ATP synthase subunit C;protein_id=UUF03742.1;transl_table=11 CP098604.1 Genbank gene 1616632 1617432 . - . ID=gene-NDY25_07165;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=NDY25_07165 CP098604.1 Protein Homology CDS 1616632 1617432 . - 0 ID=cds-UUF03743.1;Parent=gene-NDY25_07165;Dbxref=NCBI_GP:UUF03743.1;Name=UUF03743.1;Ontology_term=GO:0015986,GO:0015078,GO:0045263;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex%2C coupling factor F(o)|0045263||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814108.1;locus_tag=NDY25_07165;product=F0F1 ATP synthase subunit A;protein_id=UUF03743.1;transl_table=11 CP098604.1 Genbank gene 1617458 1617823 . - . ID=gene-NDY25_07170;Name=NDY25_07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07170 CP098604.1 Protein Homology CDS 1617458 1617823 . - 0 ID=cds-UUF03744.1;Parent=gene-NDY25_07170;Dbxref=NCBI_GP:UUF03744.1;Name=UUF03744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155241.1;locus_tag=NDY25_07170;product=hypothetical protein;protein_id=UUF03744.1;transl_table=11 CP098604.1 Genbank gene 1618350 1619162 . + . ID=gene-NDY25_07175;Name=NDY25_07175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07175 CP098604.1 Protein Homology CDS 1618350 1619162 . + 0 ID=cds-UUF03745.1;Parent=gene-NDY25_07175;Dbxref=NCBI_GP:UUF03745.1;Name=UUF03745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171127.1;locus_tag=NDY25_07175;product=hypothetical protein;protein_id=UUF03745.1;transl_table=11 CP098604.1 Genbank gene 1619240 1619938 . - . ID=gene-NDY25_07180;Name=NDY25_07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07180 CP098604.1 GeneMarkS-2+ CDS 1619240 1619938 . - 0 ID=cds-UUF03746.1;Parent=gene-NDY25_07180;Dbxref=NCBI_GP:UUF03746.1;Name=UUF03746.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07180;product=hypothetical protein;protein_id=UUF03746.1;transl_table=11 CP098604.1 Genbank gene 1620064 1621896 . - . ID=gene-NDY25_07185;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=NDY25_07185 CP098604.1 Protein Homology CDS 1620064 1621896 . - 0 ID=cds-UUF03747.1;Parent=gene-NDY25_07185;Dbxref=NCBI_GP:UUF03747.1;Name=UUF03747.1;Ontology_term=GO:0006096,GO:0045454,GO:0051068,GO:0004148;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA;go_process=glycolytic process|0006096||IEA,cell redox homeostasis|0045454||IEA,dihydrolipoamide metabolic process|0051068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114723.1;locus_tag=NDY25_07185;product=dihydrolipoyl dehydrogenase;protein_id=UUF03747.1;transl_table=11 CP098604.1 Genbank gene 1621913 1622563 . - . ID=gene-NDY25_07190;Name=NDY25_07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07190 CP098604.1 Protein Homology CDS 1621913 1622563 . - 0 ID=cds-UUF03748.1;Parent=gene-NDY25_07190;Dbxref=NCBI_GP:UUF03748.1;Name=UUF03748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237994.1;locus_tag=NDY25_07190;product=hypothetical protein;protein_id=UUF03748.1;transl_table=11 CP098604.1 Genbank gene 1622560 1624338 . - . ID=gene-NDY25_07195;Name=NDY25_07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07195 CP098604.1 Protein Homology CDS 1622560 1624338 . - 0 ID=cds-UUF03749.1;Parent=gene-NDY25_07195;Dbxref=NCBI_GP:UUF03749.1;Name=UUF03749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974307.1;locus_tag=NDY25_07195;product=dihydrolipoyllysine-residue acetyltransferase;protein_id=UUF03749.1;transl_table=11 CP098604.1 Genbank gene 1624467 1625201 . - . ID=gene-NDY25_07200;Name=NDY25_07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07200 CP098604.1 Protein Homology CDS 1624467 1625201 . - 0 ID=cds-UUF04566.1;Parent=gene-NDY25_07200;Dbxref=NCBI_GP:UUF04566.1;Name=UUF04566.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483964.1;locus_tag=NDY25_07200;product=YggN family protein;protein_id=UUF04566.1;transl_table=11 CP098604.1 Genbank gene 1625477 1626037 . - . ID=gene-NDY25_07205;Name=NDY25_07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07205 CP098604.1 Protein Homology CDS 1625477 1626037 . - 0 ID=cds-UUF03750.1;Parent=gene-NDY25_07205;Dbxref=NCBI_GP:UUF03750.1;Name=UUF03750.1;Ontology_term=GO:0006285,GO:0033958;gbkey=CDS;go_function=DNA-deoxyinosine glycosylase activity|0033958||IEA;go_process=base-excision repair%2C AP site formation|0006285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450415.1;locus_tag=NDY25_07205;product=DNA-deoxyinosine glycosylase;protein_id=UUF03750.1;transl_table=11 CP098604.1 Genbank gene 1626179 1626850 . + . ID=gene-NDY25_07210;Name=NDY25_07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07210 CP098604.1 Protein Homology CDS 1626179 1626850 . + 0 ID=cds-UUF03751.1;Parent=gene-NDY25_07210;Dbxref=NCBI_GP:UUF03751.1;Name=UUF03751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974312.1;locus_tag=NDY25_07210;product=outer membrane beta-barrel protein;protein_id=UUF03751.1;transl_table=11 CP098604.1 Genbank gene 1627598 1628026 . + . ID=gene-NDY25_07215;Name=NDY25_07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07215 CP098604.1 GeneMarkS-2+ CDS 1627598 1628026 . + 0 ID=cds-UUF03752.1;Parent=gene-NDY25_07215;Dbxref=NCBI_GP:UUF03752.1;Name=UUF03752.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07215;product=hypothetical protein;protein_id=UUF03752.1;transl_table=11 CP098604.1 Genbank gene 1628393 1628950 . - . ID=gene-NDY25_07220;Name=NDY25_07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07220 CP098604.1 Protein Homology CDS 1628393 1628950 . - 0 ID=cds-UUF03753.1;Parent=gene-NDY25_07220;Dbxref=NCBI_GP:UUF03753.1;Name=UUF03753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450413.1;locus_tag=NDY25_07220;product=DUF1453 domain-containing protein;protein_id=UUF03753.1;transl_table=11 CP098604.1 Genbank gene 1629113 1629916 . - . ID=gene-NDY25_07225;Name=NDY25_07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07225 CP098604.1 Protein Homology CDS 1629113 1629916 . - 0 ID=cds-UUF03754.1;Parent=gene-NDY25_07225;Dbxref=NCBI_GP:UUF03754.1;Name=UUF03754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157466.1;locus_tag=NDY25_07225;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=UUF03754.1;transl_table=11 CP098604.1 Genbank gene 1630053 1630748 . - . ID=gene-NDY25_07230;Name=NDY25_07230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07230 CP098604.1 Protein Homology CDS 1630053 1630748 . - 0 ID=cds-UUF03755.1;Parent=gene-NDY25_07230;Dbxref=NCBI_GP:UUF03755.1;Name=UUF03755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489185.1;locus_tag=NDY25_07230;product=ABC transporter permease;protein_id=UUF03755.1;transl_table=11 CP098604.1 Genbank gene 1630745 1631752 . - . ID=gene-NDY25_07235;Name=NDY25_07235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07235 CP098604.1 Protein Homology CDS 1630745 1631752 . - 0 ID=cds-UUF03756.1;Parent=gene-NDY25_07235;Dbxref=NCBI_GP:UUF03756.1;Name=UUF03756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038713.1;locus_tag=NDY25_07235;product=methionine ABC transporter ATP-binding protein;protein_id=UUF03756.1;transl_table=11 CP098604.1 Genbank gene 1631915 1632811 . - . ID=gene-NDY25_07240;Name=NDY25_07240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07240 CP098604.1 Protein Homology CDS 1631915 1632811 . - 0 ID=cds-UUF03757.1;Parent=gene-NDY25_07240;Dbxref=NCBI_GP:UUF03757.1;Name=UUF03757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348672.1;locus_tag=NDY25_07240;product=DMT family transporter;protein_id=UUF03757.1;transl_table=11 CP098604.1 Genbank gene 1632919 1633404 . + . ID=gene-NDY25_07245;Name=NDY25_07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07245 CP098604.1 Protein Homology CDS 1632919 1633404 . + 0 ID=cds-UUF03758.1;Parent=gene-NDY25_07245;Dbxref=NCBI_GP:UUF03758.1;Name=UUF03758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300350.1;locus_tag=NDY25_07245;product=YajQ family cyclic di-GMP-binding protein;protein_id=UUF03758.1;transl_table=11 CP098604.1 Genbank gene 1633541 1634533 . + . ID=gene-NDY25_07250;Name=NDY25_07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07250 CP098604.1 Protein Homology CDS 1633541 1634533 . + 0 ID=cds-UUF04567.1;Parent=gene-NDY25_07250;Dbxref=NCBI_GP:UUF04567.1;Name=UUF04567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257602.1;locus_tag=NDY25_07250;product=alpha/beta fold hydrolase;protein_id=UUF04567.1;transl_table=11 CP098604.1 Genbank gene 1634659 1635465 . + . ID=gene-NDY25_07255;Name=NDY25_07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07255 CP098604.1 Protein Homology CDS 1634659 1635465 . + 0 ID=cds-UUF03759.1;Parent=gene-NDY25_07255;Dbxref=NCBI_GP:UUF03759.1;Name=UUF03759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450405.1;locus_tag=NDY25_07255;product=SDR family oxidoreductase;protein_id=UUF03759.1;transl_table=11 CP098604.1 Genbank gene 1635613 1636326 . - . ID=gene-NDY25_07260;Name=NDY25_07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07260 CP098604.1 Protein Homology CDS 1635613 1636326 . - 0 ID=cds-UUF03760.1;Parent=gene-NDY25_07260;Dbxref=NCBI_GP:UUF03760.1;Name=UUF03760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171645.1;locus_tag=NDY25_07260;product=rRNA pseudouridine synthase;protein_id=UUF03760.1;transl_table=11 CP098604.1 Genbank gene 1636323 1637390 . - . ID=gene-NDY25_07265;Name=NDY25_07265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07265 CP098604.1 Protein Homology CDS 1636323 1637390 . - 0 ID=cds-UUF03761.1;Parent=gene-NDY25_07265;Dbxref=NCBI_GP:UUF03761.1;Name=UUF03761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300358.1;locus_tag=NDY25_07265;product=class I SAM-dependent methyltransferase;protein_id=UUF03761.1;transl_table=11 CP098604.1 Genbank gene 1638000 1638218 . + . ID=gene-NDY25_07270;Name=NDY25_07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07270 CP098604.1 Protein Homology CDS 1638000 1638218 . + 0 ID=cds-UUF04568.1;Parent=gene-NDY25_07270;Dbxref=NCBI_GP:UUF04568.1;Name=UUF04568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002814144.1;locus_tag=NDY25_07270;product=hypothetical protein;protein_id=UUF04568.1;transl_table=11 CP098604.1 Genbank gene 1638320 1639657 . - . ID=gene-NDY25_07275;Name=NDY25_07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07275 CP098604.1 Protein Homology CDS 1638320 1639657 . - 0 ID=cds-UUF03762.1;Parent=gene-NDY25_07275;Dbxref=NCBI_GP:UUF03762.1;Name=UUF03762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922022.1;locus_tag=NDY25_07275;product=sorbosone dehydrogenase family protein;protein_id=UUF03762.1;transl_table=11 CP098604.1 Genbank gene 1639747 1640055 . - . ID=gene-NDY25_07280;Name=NDY25_07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07280 CP098604.1 Protein Homology CDS 1639747 1640055 . - 0 ID=cds-UUF03763.1;Parent=gene-NDY25_07280;Dbxref=NCBI_GP:UUF03763.1;Name=UUF03763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911254.1;locus_tag=NDY25_07280;product=DUF3247 family protein;protein_id=UUF03763.1;transl_table=11 CP098604.1 Genbank gene 1640181 1642214 . - . ID=gene-NDY25_07285;Name=NDY25_07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07285 CP098604.1 Protein Homology CDS 1640181 1642214 . - 0 ID=cds-UUF03764.1;Parent=gene-NDY25_07285;Dbxref=NCBI_GP:UUF03764.1;Name=UUF03764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157452.1;locus_tag=NDY25_07285;product=ATP-binding protein;protein_id=UUF03764.1;transl_table=11 CP098604.1 Genbank gene 1642322 1642612 . - . ID=gene-NDY25_07290;Name=NDY25_07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07290 CP098604.1 Protein Homology CDS 1642322 1642612 . - 0 ID=cds-UUF03765.1;Parent=gene-NDY25_07290;Dbxref=NCBI_GP:UUF03765.1;Name=UUF03765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164608.1;locus_tag=NDY25_07290;product=hypothetical protein;protein_id=UUF03765.1;transl_table=11 CP098604.1 Genbank gene 1642599 1643045 . - . ID=gene-NDY25_07295;Name=NDY25_07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07295 CP098604.1 Protein Homology CDS 1642599 1643045 . - 0 ID=cds-UUF03766.1;Parent=gene-NDY25_07295;Dbxref=NCBI_GP:UUF03766.1;Name=UUF03766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372107.1;locus_tag=NDY25_07295;product=hypothetical protein;protein_id=UUF03766.1;transl_table=11 CP098604.1 Genbank gene 1643294 1643869 . + . ID=gene-NDY25_07300;Name=NDY25_07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07300 CP098604.1 Protein Homology CDS 1643294 1643869 . + 0 ID=cds-UUF03767.1;Parent=gene-NDY25_07300;Dbxref=NCBI_GP:UUF03767.1;Name=UUF03767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992142.1;locus_tag=NDY25_07300;product=DUF3016 domain-containing protein;protein_id=UUF03767.1;transl_table=11 CP098604.1 Genbank gene 1644021 1645121 . - . ID=gene-NDY25_07305;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=NDY25_07305 CP098604.1 Protein Homology CDS 1644021 1645121 . - 0 ID=cds-UUF03768.1;Parent=gene-NDY25_07305;Dbxref=NCBI_GP:UUF03768.1;Name=UUF03768.1;Ontology_term=GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472761.1;locus_tag=NDY25_07305;product=alanine racemase;protein_id=UUF03768.1;transl_table=11 CP098604.1 Genbank gene 1645121 1646410 . - . ID=gene-NDY25_07310;Name=NDY25_07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07310 CP098604.1 Protein Homology CDS 1645121 1646410 . - 0 ID=cds-UUF03769.1;Parent=gene-NDY25_07310;Dbxref=NCBI_GP:UUF03769.1;Name=UUF03769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963042.1;locus_tag=NDY25_07310;product=D-amino acid dehydrogenase;protein_id=UUF03769.1;transl_table=11 CP098604.1 Genbank gene 1646560 1647039 . + . ID=gene-NDY25_07315;Name=NDY25_07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07315 CP098604.1 Protein Homology CDS 1646560 1647039 . + 0 ID=cds-UUF03770.1;Parent=gene-NDY25_07315;Dbxref=NCBI_GP:UUF03770.1;Name=UUF03770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166392.1;locus_tag=NDY25_07315;product=Lrp/AsnC ligand binding domain-containing protein;protein_id=UUF03770.1;transl_table=11 CP098604.1 Genbank gene 1647153 1647584 . - . ID=gene-NDY25_07320;Name=NDY25_07320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07320 CP098604.1 Protein Homology CDS 1647153 1647584 . - 0 ID=cds-UUF03771.1;Parent=gene-NDY25_07320;Dbxref=NCBI_GP:UUF03771.1;Name=UUF03771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157446.1;locus_tag=NDY25_07320;product=hypothetical protein;protein_id=UUF03771.1;transl_table=11 CP098604.1 Genbank gene 1647964 1648428 . + . ID=gene-NDY25_07325;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=NDY25_07325 CP098604.1 Protein Homology CDS 1647964 1648428 . + 0 ID=cds-UUF03772.1;Parent=gene-NDY25_07325;Dbxref=NCBI_GP:UUF03772.1;Name=UUF03772.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489131.1;locus_tag=NDY25_07325;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=UUF03772.1;transl_table=11 CP098604.1 Genbank gene 1648528 1648599 . + . ID=gene-NDY25_07330;Name=NDY25_07330;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_07330 CP098604.1 cmsearch ncRNA 1648528 1648599 . + . ID=rna-NDY25_07330;Parent=gene-NDY25_07330;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_07330;product=sX9 sRNA CP098604.1 cmsearch exon 1648528 1648599 . + . ID=exon-NDY25_07330-1;Parent=rna-NDY25_07330;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_07330;product=sX9 sRNA CP098604.1 Genbank gene 1648652 1648867 . + . ID=gene-NDY25_07335;Name=NDY25_07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07335 CP098604.1 GeneMarkS-2+ CDS 1648652 1648867 . + 0 ID=cds-UUF03773.1;Parent=gene-NDY25_07335;Dbxref=NCBI_GP:UUF03773.1;Name=UUF03773.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07335;product=hypothetical protein;protein_id=UUF03773.1;transl_table=11 CP098604.1 Genbank gene 1649029 1649883 . + . ID=gene-NDY25_07340;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=NDY25_07340 CP098604.1 Protein Homology CDS 1649029 1649883 . + 0 ID=cds-UUF03774.1;Parent=gene-NDY25_07340;Dbxref=NCBI_GP:UUF03774.1;Name=UUF03774.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303316.1;locus_tag=NDY25_07340;product=flagellar motor stator protein MotA;protein_id=UUF03774.1;transl_table=11 CP098604.1 Genbank gene 1649894 1651108 . + . ID=gene-NDY25_07345;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=NDY25_07345 CP098604.1 Protein Homology CDS 1649894 1651108 . + 0 ID=cds-UUF03775.1;Parent=gene-NDY25_07345;Dbxref=NCBI_GP:UUF03775.1;Name=UUF03775.1;gbkey=CDS;gene=motB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452581.1;locus_tag=NDY25_07345;product=flagellar motor protein MotB;protein_id=UUF03775.1;transl_table=11 CP098604.1 Genbank gene 1652115 1652399 . + . ID=gene-NDY25_07350;Name=NDY25_07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07350 CP098604.1 Protein Homology CDS 1652115 1652399 . + 0 ID=cds-UUF04569.1;Parent=gene-NDY25_07350;Dbxref=NCBI_GP:UUF04569.1;Name=UUF04569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238009.1;locus_tag=NDY25_07350;product=DUF4031 domain-containing protein;protein_id=UUF04569.1;transl_table=11 CP098604.1 Genbank gene 1652810 1653361 . - . ID=gene-NDY25_07355;Name=NDY25_07355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07355 CP098604.1 Protein Homology CDS 1652810 1653361 . - 0 ID=cds-UUF03776.1;Parent=gene-NDY25_07355;Dbxref=NCBI_GP:UUF03776.1;Name=UUF03776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452585.1;locus_tag=NDY25_07355;product=hypothetical protein;protein_id=UUF03776.1;transl_table=11 CP098604.1 Genbank gene 1653526 1653792 . + . ID=gene-NDY25_07360;Name=NDY25_07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07360 CP098604.1 Protein Homology CDS 1653526 1653792 . + 0 ID=cds-UUF03777.1;Parent=gene-NDY25_07360;Dbxref=NCBI_GP:UUF03777.1;Name=UUF03777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038741.1;locus_tag=NDY25_07360;product=DUF3297 family protein;protein_id=UUF03777.1;transl_table=11 CP098604.1 Genbank gene 1654406 1655167 . - . ID=gene-NDY25_07365;Name=NDY25_07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07365 CP098604.1 Protein Homology CDS 1654406 1655167 . - 0 ID=cds-UUF03778.1;Parent=gene-NDY25_07365;Dbxref=NCBI_GP:UUF03778.1;Name=UUF03778.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157438.1;locus_tag=NDY25_07365;product=ABC transporter permease;protein_id=UUF03778.1;transl_table=11 CP098604.1 Genbank gene 1655164 1656108 . - . ID=gene-NDY25_07370;Name=NDY25_07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07370 CP098604.1 Protein Homology CDS 1655164 1656108 . - 0 ID=cds-UUF03779.1;Parent=gene-NDY25_07370;Dbxref=NCBI_GP:UUF03779.1;Name=UUF03779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448573.1;locus_tag=NDY25_07370;product=ABC transporter ATP-binding protein;protein_id=UUF03779.1;transl_table=11 CP098604.1 Genbank gene 1656408 1658045 . - . ID=gene-NDY25_07375;Name=NDY25_07375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07375 CP098604.1 Protein Homology CDS 1656408 1658045 . - 0 ID=cds-UUF03780.1;Parent=gene-NDY25_07375;Dbxref=NCBI_GP:UUF03780.1;Name=UUF03780.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385;gbkey=CDS;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504747.1;locus_tag=NDY25_07375;product=Na+/H+ antiporter;protein_id=UUF03780.1;transl_table=11 CP098604.1 Genbank gene 1658383 1659030 . - . ID=gene-NDY25_07380;Name=NDY25_07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07380 CP098604.1 GeneMarkS-2+ CDS 1658383 1659030 . - 0 ID=cds-UUF03781.1;Parent=gene-NDY25_07380;Dbxref=NCBI_GP:UUF03781.1;Name=UUF03781.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07380;product=hypothetical protein;protein_id=UUF03781.1;transl_table=11 CP098604.1 Genbank gene 1659427 1659984 . + . ID=gene-NDY25_07385;Name=NDY25_07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07385 CP098604.1 Protein Homology CDS 1659427 1659984 . + 0 ID=cds-UUF03782.1;Parent=gene-NDY25_07385;Dbxref=NCBI_GP:UUF03782.1;Name=UUF03782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489588.1;locus_tag=NDY25_07385;product=fasciclin domain-containing protein;protein_id=UUF03782.1;transl_table=11 CP098604.1 Genbank gene 1660357 1661796 . - . ID=gene-NDY25_07390;Name=NDY25_07390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07390 CP098604.1 Protein Homology CDS 1660357 1661796 . - 0 ID=cds-UUF03783.1;Parent=gene-NDY25_07390;Dbxref=NCBI_GP:UUF03783.1;Name=UUF03783.1;Note=This protein belongs to the uracil DNA glycosylase superfamily%2C members of which act in excision repair of DNA. However%2C it belongs more specifically to UdgX branch%2C whose founding member was found to bind uracil in DNA (where it does not belong)%2C without cleaving it%2C appears to promote DNA repair by a pathway involving RecA%2C rather than base excision.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448568.1;locus_tag=NDY25_07390;product=UdgX family uracil-DNA binding protein;protein_id=UUF03783.1;transl_table=11 CP098604.1 Genbank gene 1662327 1663571 . - . ID=gene-NDY25_07395;Name=NDY25_07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07395 CP098604.1 Protein Homology CDS 1662327 1663571 . - 0 ID=cds-UUF03784.1;Parent=gene-NDY25_07395;Dbxref=NCBI_GP:UUF03784.1;Name=UUF03784.1;Ontology_term=GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167194.1;locus_tag=NDY25_07395;product=putative DNA modification/repair radical SAM protein;protein_id=UUF03784.1;transl_table=11 CP098604.1 Genbank gene 1663889 1664707 . - . ID=gene-NDY25_07400;Name=NDY25_07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07400 CP098604.1 Protein Homology CDS 1663889 1664707 . - 0 ID=cds-UUF03785.1;Parent=gene-NDY25_07400;Dbxref=NCBI_GP:UUF03785.1;Name=UUF03785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489595.1;locus_tag=NDY25_07400;product=dioxygenase;protein_id=UUF03785.1;transl_table=11 CP098604.1 Genbank gene 1664740 1665150 . - . ID=gene-NDY25_07405;Name=NDY25_07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07405 CP098604.1 Protein Homology CDS 1664740 1665150 . - 0 ID=cds-UUF03786.1;Parent=gene-NDY25_07405;Dbxref=NCBI_GP:UUF03786.1;Name=UUF03786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157431.1;locus_tag=NDY25_07405;product=DoxX family protein;protein_id=UUF03786.1;transl_table=11 CP098604.1 Genbank gene 1665257 1666192 . + . ID=gene-NDY25_07410;Name=NDY25_07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07410 CP098604.1 Protein Homology CDS 1665257 1666192 . + 0 ID=cds-UUF03787.1;Parent=gene-NDY25_07410;Dbxref=NCBI_GP:UUF03787.1;Name=UUF03787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038750.1;locus_tag=NDY25_07410;product=LysR family transcriptional regulator;protein_id=UUF03787.1;transl_table=11 CP098604.1 Genbank gene 1666247 1666816 . + . ID=gene-NDY25_07415;Name=NDY25_07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07415 CP098604.1 Protein Homology CDS 1666247 1666816 . + 0 ID=cds-UUF03788.1;Parent=gene-NDY25_07415;Dbxref=NCBI_GP:UUF03788.1;Name=UUF03788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270027.1;locus_tag=NDY25_07415;product=flavodoxin family protein;protein_id=UUF03788.1;transl_table=11 CP098604.1 Genbank gene 1667040 1668035 . + . ID=gene-NDY25_07420;Name=NDY25_07420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07420 CP098604.1 Protein Homology CDS 1667040 1668035 . + 0 ID=cds-UUF03789.1;Parent=gene-NDY25_07420;Dbxref=NCBI_GP:UUF03789.1;Name=UUF03789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972965.1;locus_tag=NDY25_07420;product=aldo/keto reductase;protein_id=UUF03789.1;transl_table=11 CP098604.1 Genbank gene 1668151 1668846 . + . ID=gene-NDY25_07425;Name=NDY25_07425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07425 CP098604.1 Protein Homology CDS 1668151 1668846 . + 0 ID=cds-UUF03790.1;Parent=gene-NDY25_07425;Dbxref=NCBI_GP:UUF03790.1;Name=UUF03790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573318.1;locus_tag=NDY25_07425;product=glycosyltransferase;protein_id=UUF03790.1;transl_table=11 CP098604.1 Genbank gene 1668994 1671063 . + . ID=gene-NDY25_07430;Name=NDY25_07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07430 CP098604.1 Protein Homology CDS 1668994 1671063 . + 0 ID=cds-UUF04570.1;Parent=gene-NDY25_07430;Dbxref=NCBI_GP:UUF04570.1;Name=UUF04570.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167581.1;locus_tag=NDY25_07430;product=M13 family metallopeptidase;protein_id=UUF04570.1;transl_table=11 CP098604.1 Genbank gene 1671201 1672130 . - . ID=gene-NDY25_07435;Name=NDY25_07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07435 CP098604.1 Protein Homology CDS 1671201 1672130 . - 0 ID=cds-UUF03791.1;Parent=gene-NDY25_07435;Dbxref=NCBI_GP:UUF03791.1;Name=UUF03791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448559.1;locus_tag=NDY25_07435;product=oxygenase MpaB family protein;protein_id=UUF03791.1;transl_table=11 CP098604.1 Genbank gene 1672539 1673138 . + . ID=gene-NDY25_07440;Name=NDY25_07440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07440 CP098604.1 Protein Homology CDS 1672539 1673138 . + 0 ID=cds-UUF03792.1;Parent=gene-NDY25_07440;Dbxref=NCBI_GP:UUF03792.1;Name=UUF03792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118539.1;locus_tag=NDY25_07440;product=hypothetical protein;protein_id=UUF03792.1;transl_table=11 CP098604.1 Genbank gene 1673662 1675257 . - . ID=gene-NDY25_07445;Name=NDY25_07445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07445 CP098604.1 Protein Homology CDS 1673662 1675257 . - 0 ID=cds-UUF03793.1;Parent=gene-NDY25_07445;Dbxref=NCBI_GP:UUF03793.1;Name=UUF03793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803093.1;locus_tag=NDY25_07445;product=APC family permease;protein_id=UUF03793.1;transl_table=11 CP098604.1 Genbank gene 1675364 1675735 . - . ID=gene-NDY25_07450;Name=NDY25_07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07450 CP098604.1 Protein Homology CDS 1675364 1675735 . - 0 ID=cds-UUF03794.1;Parent=gene-NDY25_07450;Dbxref=NCBI_GP:UUF03794.1;Name=UUF03794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157422.1;locus_tag=NDY25_07450;product=hypothetical protein;protein_id=UUF03794.1;transl_table=11 CP098604.1 Genbank gene 1675772 1676548 . - . ID=gene-NDY25_07455;Name=NDY25_07455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07455 CP098604.1 Protein Homology CDS 1675772 1676548 . - 0 ID=cds-UUF03795.1;Parent=gene-NDY25_07455;Dbxref=NCBI_GP:UUF03795.1;Name=UUF03795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038759.1;locus_tag=NDY25_07455;product=LytTR family DNA-binding domain-containing protein;protein_id=UUF03795.1;transl_table=11 CP098604.1 Genbank gene 1676545 1677840 . - . ID=gene-NDY25_07460;Name=NDY25_07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07460 CP098604.1 Protein Homology CDS 1676545 1677840 . - 0 ID=cds-UUF03796.1;Parent=gene-NDY25_07460;Dbxref=NCBI_GP:UUF03796.1;Name=UUF03796.1;Ontology_term=GO:0000160,GO:0000155,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439357.1;locus_tag=NDY25_07460;product=histidine kinase;protein_id=UUF03796.1;transl_table=11 CP098604.1 Genbank gene 1678160 1679374 . + . ID=gene-NDY25_07465;Name=NDY25_07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07465 CP098604.1 Protein Homology CDS 1678160 1679374 . + 0 ID=cds-UUF03797.1;Parent=gene-NDY25_07465;Dbxref=NCBI_GP:UUF03797.1;Name=UUF03797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301250.1;locus_tag=NDY25_07465;product=FAD-binding oxidoreductase;protein_id=UUF03797.1;transl_table=11 CP098604.1 Genbank gene 1679397 1679603 . - . ID=gene-NDY25_07470;Name=NDY25_07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07470 CP098604.1 Protein Homology CDS 1679397 1679603 . - 0 ID=cds-UUF04571.1;Parent=gene-NDY25_07470;Dbxref=NCBI_GP:UUF04571.1;Name=UUF04571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900917.1;locus_tag=NDY25_07470;product=hypothetical protein;protein_id=UUF04571.1;transl_table=11 CP098604.1 Genbank gene 1679639 1679714 . + . ID=gene-NDY25_07475;Name=NDY25_07475;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_07475 CP098604.1 cmsearch ncRNA 1679639 1679714 . + . ID=rna-NDY25_07475;Parent=gene-NDY25_07475;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_07475;product=sX9 sRNA CP098604.1 cmsearch exon 1679639 1679714 . + . ID=exon-NDY25_07475-1;Parent=rna-NDY25_07475;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_07475;product=sX9 sRNA CP098604.1 Genbank gene 1680072 1680578 . + . ID=gene-NDY25_07480;Name=NDY25_07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07480 CP098604.1 Protein Homology CDS 1680072 1680578 . + 0 ID=cds-UUF03798.1;Parent=gene-NDY25_07480;Dbxref=NCBI_GP:UUF03798.1;Name=UUF03798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803088.1;locus_tag=NDY25_07480;product=ferritin-like domain-containing protein;protein_id=UUF03798.1;transl_table=11 CP098604.1 Genbank gene 1680716 1681615 . + . ID=gene-NDY25_07485;Name=NDY25_07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07485 CP098604.1 Protein Homology CDS 1680716 1681615 . + 0 ID=cds-UUF03799.1;Parent=gene-NDY25_07485;Dbxref=NCBI_GP:UUF03799.1;Name=UUF03799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803085.1;locus_tag=NDY25_07485;product=manganese catalase family protein;protein_id=UUF03799.1;transl_table=11 CP098604.1 Genbank gene 1682143 1682715 . - . ID=gene-NDY25_07490;Name=NDY25_07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07490 CP098604.1 Protein Homology CDS 1682143 1682715 . - 0 ID=cds-UUF03800.1;Parent=gene-NDY25_07490;Dbxref=NCBI_GP:UUF03800.1;Name=UUF03800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911287.1;locus_tag=NDY25_07490;product=hypothetical protein;protein_id=UUF03800.1;transl_table=11 CP098604.1 Genbank gene 1682992 1686534 . - . ID=gene-NDY25_07495;Name=NDY25_07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07495 CP098604.1 Protein Homology CDS 1682992 1686534 . - 0 ID=cds-UUF04572.1;Parent=gene-NDY25_07495;Dbxref=NCBI_GP:UUF04572.1;Name=UUF04572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988120.1;locus_tag=NDY25_07495;product=PAS domain-containing protein;protein_id=UUF04572.1;transl_table=11 CP098604.1 Genbank gene 1686741 1687124 . + . ID=gene-NDY25_07500;Name=NDY25_07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07500 CP098604.1 Protein Homology CDS 1686741 1687124 . + 0 ID=cds-UUF03801.1;Parent=gene-NDY25_07500;Dbxref=NCBI_GP:UUF03801.1;Name=UUF03801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038770.1;locus_tag=NDY25_07500;product=response regulator;protein_id=UUF03801.1;transl_table=11 CP098604.1 Genbank gene 1687157 1687384 . - . ID=gene-NDY25_07505;Name=NDY25_07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07505 CP098604.1 Protein Homology CDS 1687157 1687384 . - 0 ID=cds-UUF03802.1;Parent=gene-NDY25_07505;Dbxref=NCBI_GP:UUF03802.1;Name=UUF03802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238017.1;locus_tag=NDY25_07505;product=hypothetical protein;protein_id=UUF03802.1;transl_table=11 CP098604.1 Genbank gene 1687384 1688664 . - . ID=gene-NDY25_07510;Name=NDY25_07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07510 CP098604.1 Protein Homology CDS 1687384 1688664 . - 0 ID=cds-UUF03803.1;Parent=gene-NDY25_07510;Dbxref=NCBI_GP:UUF03803.1;Name=UUF03803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117241.1;locus_tag=NDY25_07510;product=sigma-54 dependent transcriptional regulator;protein_id=UUF03803.1;transl_table=11 CP098604.1 Genbank gene 1689230 1689415 . - . ID=gene-NDY25_07515;Name=NDY25_07515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07515 CP098604.1 Protein Homology CDS 1689230 1689415 . - 0 ID=cds-UUF03804.1;Parent=gene-NDY25_07515;Dbxref=NCBI_GP:UUF03804.1;Name=UUF03804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803068.1;locus_tag=NDY25_07515;product=hypothetical protein;protein_id=UUF03804.1;transl_table=11 CP098604.1 Genbank gene 1689557 1690198 . - . ID=gene-NDY25_07520;Name=NDY25_07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07520 CP098604.1 Protein Homology CDS 1689557 1690198 . - 0 ID=cds-UUF03805.1;Parent=gene-NDY25_07520;Dbxref=NCBI_GP:UUF03805.1;Name=UUF03805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379736.1;locus_tag=NDY25_07520;product=hypothetical protein;protein_id=UUF03805.1;transl_table=11 CP098604.1 Genbank gene 1690419 1691285 . + . ID=gene-NDY25_07525;Name=NDY25_07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07525 CP098604.1 Protein Homology CDS 1690419 1691285 . + 0 ID=cds-UUF03806.1;Parent=gene-NDY25_07525;Dbxref=NCBI_GP:UUF03806.1;Name=UUF03806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463646.1;locus_tag=NDY25_07525;product=SDR family oxidoreductase;protein_id=UUF03806.1;transl_table=11 CP098604.1 Genbank gene 1692359 1693516 . + . ID=gene-NDY25_07530;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=NDY25_07530 CP098604.1 Protein Homology CDS 1692359 1693516 . + 0 ID=cds-UUF03807.1;Parent=gene-NDY25_07530;Dbxref=NCBI_GP:UUF03807.1;Name=UUF03807.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577700.1;locus_tag=NDY25_07530;product=UDP-glucose 4-epimerase GalE;protein_id=UUF03807.1;transl_table=11 CP098604.1 Genbank gene 1693556 1694740 . + . ID=gene-NDY25_07535;Name=NDY25_07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07535 CP098604.1 Protein Homology CDS 1693556 1694740 . + 0 ID=cds-UUF03808.1;Parent=gene-NDY25_07535;Dbxref=NCBI_GP:UUF03808.1;Name=UUF03808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118546.1;locus_tag=NDY25_07535;product=glycosyltransferase family 1 protein;protein_id=UUF03808.1;transl_table=11 CP098604.1 Genbank gene 1694737 1695924 . + . ID=gene-NDY25_07540;Name=glf;gbkey=Gene;gene=glf;gene_biotype=protein_coding;locus_tag=NDY25_07540 CP098604.1 Protein Homology CDS 1694737 1695924 . + 0 ID=cds-UUF04573.1;Parent=gene-NDY25_07540;Dbxref=NCBI_GP:UUF04573.1;Name=UUF04573.1;Ontology_term=GO:0009273,GO:0008767;gbkey=CDS;gene=glf;go_function=UDP-galactopyranose mutase activity|0008767||IEA;go_process=peptidoglycan-based cell wall biogenesis|0009273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452919.1;locus_tag=NDY25_07540;product=UDP-galactopyranose mutase;protein_id=UUF04573.1;transl_table=11 CP098604.1 Genbank gene 1696016 1697167 . + . ID=gene-NDY25_07545;Name=NDY25_07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07545 CP098604.1 Protein Homology CDS 1696016 1697167 . + 0 ID=cds-UUF03809.1;Parent=gene-NDY25_07545;Dbxref=NCBI_GP:UUF03809.1;Name=UUF03809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439377.1;locus_tag=NDY25_07545;product=beta-glucosidase;protein_id=UUF03809.1;transl_table=11 CP098604.1 Genbank gene 1697194 1698945 . + . ID=gene-NDY25_07550;Name=NDY25_07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07550 CP098604.1 Protein Homology CDS 1697194 1698945 . + 0 ID=cds-UUF04574.1;Parent=gene-NDY25_07550;Dbxref=NCBI_GP:UUF04574.1;Name=UUF04574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900932.1;locus_tag=NDY25_07550;product=ABC transporter ATP-binding protein/permease;protein_id=UUF04574.1;transl_table=11 CP098604.1 Genbank gene 1699672 1700316 . - . ID=gene-NDY25_07555;Name=NDY25_07555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07555 CP098604.1 Protein Homology CDS 1699672 1700316 . - 0 ID=cds-UUF03810.1;Parent=gene-NDY25_07555;Dbxref=NCBI_GP:UUF03810.1;Name=UUF03810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159347.1;locus_tag=NDY25_07555;product=DUF4142 domain-containing protein;protein_id=UUF03810.1;transl_table=11 CP098604.1 Genbank gene 1700577 1701740 . + . ID=gene-NDY25_07560;Name=NDY25_07560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07560 CP098604.1 Protein Homology CDS 1700577 1701740 . + 0 ID=cds-UUF03811.1;Parent=gene-NDY25_07560;Dbxref=NCBI_GP:UUF03811.1;Name=UUF03811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849560.1;locus_tag=NDY25_07560;product=glutathione-dependent formaldehyde dehydrogenase;protein_id=UUF03811.1;transl_table=11 CP098604.1 Genbank gene 1701819 1701986 . - . ID=gene-NDY25_07565;Name=NDY25_07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07565 CP098604.1 Protein Homology CDS 1701819 1701986 . - 0 ID=cds-UUF03812.1;Parent=gene-NDY25_07565;Dbxref=NCBI_GP:UUF03812.1;Name=UUF03812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157401.1;locus_tag=NDY25_07565;product=hypothetical protein;protein_id=UUF03812.1;transl_table=11 CP098604.1 Genbank gene 1702310 1702561 . + . ID=gene-NDY25_07570;Name=NDY25_07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07570 CP098604.1 Protein Homology CDS 1702310 1702561 . + 0 ID=cds-UUF03813.1;Parent=gene-NDY25_07570;Dbxref=NCBI_GP:UUF03813.1;Name=UUF03813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804067.1;locus_tag=NDY25_07570;product=YkgJ family cysteine cluster protein;protein_id=UUF03813.1;transl_table=11 CP098604.1 Genbank gene 1702571 1702840 . + . ID=gene-NDY25_07575;Name=NDY25_07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07575 CP098604.1 Protein Homology CDS 1702571 1702840 . + 0 ID=cds-UUF03814.1;Parent=gene-NDY25_07575;Dbxref=NCBI_GP:UUF03814.1;Name=UUF03814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804065.1;locus_tag=NDY25_07575;product=hypothetical protein;protein_id=UUF03814.1;transl_table=11 CP098604.1 Genbank gene 1703018 1703230 . - . ID=gene-NDY25_07580;Name=NDY25_07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07580 CP098604.1 Protein Homology CDS 1703018 1703230 . - 0 ID=cds-UUF03815.1;Parent=gene-NDY25_07580;Dbxref=NCBI_GP:UUF03815.1;Name=UUF03815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577678.1;locus_tag=NDY25_07580;product=hypothetical protein;protein_id=UUF03815.1;transl_table=11 CP098604.1 Genbank gene 1703509 1704420 . - . ID=gene-NDY25_07585;Name=NDY25_07585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07585 CP098604.1 Protein Homology CDS 1703509 1704420 . - 0 ID=cds-UUF03816.1;Parent=gene-NDY25_07585;Dbxref=NCBI_GP:UUF03816.1;Name=UUF03816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449498.1;locus_tag=NDY25_07585;product=LysR family transcriptional regulator;protein_id=UUF03816.1;transl_table=11 CP098604.1 Genbank gene 1704524 1705723 . + . ID=gene-NDY25_07590;Name=NDY25_07590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07590 CP098604.1 Protein Homology CDS 1704524 1705723 . + 0 ID=cds-UUF03817.1;Parent=gene-NDY25_07590;Dbxref=NCBI_GP:UUF03817.1;Name=UUF03817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449497.1;locus_tag=NDY25_07590;product=MFS transporter;protein_id=UUF03817.1;transl_table=11 CP098604.1 Genbank gene 1706070 1706807 . + . ID=gene-NDY25_07595;Name=NDY25_07595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07595 CP098604.1 Protein Homology CDS 1706070 1706807 . + 0 ID=cds-UUF03818.1;Parent=gene-NDY25_07595;Dbxref=NCBI_GP:UUF03818.1;Name=UUF03818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301270.1;locus_tag=NDY25_07595;product=DUF3348 domain-containing protein;protein_id=UUF03818.1;transl_table=11 CP098604.1 Genbank gene 1706818 1709499 . + . ID=gene-NDY25_07600;Name=NDY25_07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07600 CP098604.1 Protein Homology CDS 1706818 1709499 . + 0 ID=cds-UUF03819.1;Parent=gene-NDY25_07600;Dbxref=NCBI_GP:UUF03819.1;Name=UUF03819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449495.1;locus_tag=NDY25_07600;product=DUF802 domain-containing protein;protein_id=UUF03819.1;transl_table=11 CP098604.1 Genbank gene 1709496 1710170 . + . ID=gene-NDY25_07605;Name=NDY25_07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07605 CP098604.1 Protein Homology CDS 1709496 1710170 . + 0 ID=cds-UUF03820.1;Parent=gene-NDY25_07605;Dbxref=NCBI_GP:UUF03820.1;Name=UUF03820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449494.1;locus_tag=NDY25_07605;product=OmpA family protein;protein_id=UUF03820.1;transl_table=11 CP098604.1 Genbank gene 1710167 1710820 . + . ID=gene-NDY25_07610;Name=NDY25_07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07610 CP098604.1 Protein Homology CDS 1710167 1710820 . + 0 ID=cds-UUF03821.1;Parent=gene-NDY25_07610;Dbxref=NCBI_GP:UUF03821.1;Name=UUF03821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160409.1;locus_tag=NDY25_07610;product=DUF2894 domain-containing protein;protein_id=UUF03821.1;transl_table=11 CP098604.1 Genbank gene 1710849 1712999 . - . ID=gene-NDY25_07615;Name=NDY25_07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07615 CP098604.1 Protein Homology CDS 1710849 1712999 . - 0 ID=cds-UUF03822.1;Parent=gene-NDY25_07615;Dbxref=NCBI_GP:UUF03822.1;Name=UUF03822.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379725.1;locus_tag=NDY25_07615;product=TonB-dependent siderophore receptor;protein_id=UUF03822.1;transl_table=11 CP098604.1 Genbank gene 1713086 1714354 . - . ID=gene-NDY25_07620;Name=NDY25_07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07620 CP098604.1 Protein Homology CDS 1713086 1714354 . - 0 ID=cds-UUF03823.1;Parent=gene-NDY25_07620;Dbxref=NCBI_GP:UUF03823.1;Name=UUF03823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911318.1;locus_tag=NDY25_07620;product=DUF3526 domain-containing protein;protein_id=UUF03823.1;transl_table=11 CP098604.1 Genbank gene 1714354 1715790 . - . ID=gene-NDY25_07625;Name=NDY25_07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07625 CP098604.1 Protein Homology CDS 1714354 1715790 . - 0 ID=cds-UUF03824.1;Parent=gene-NDY25_07625;Dbxref=NCBI_GP:UUF03824.1;Name=UUF03824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900947.1;locus_tag=NDY25_07625;product=DUF3526 domain-containing protein;protein_id=UUF03824.1;transl_table=11 CP098604.1 Genbank gene 1715801 1716541 . - . ID=gene-NDY25_07630;Name=NDY25_07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07630 CP098604.1 Protein Homology CDS 1715801 1716541 . - 0 ID=cds-UUF03825.1;Parent=gene-NDY25_07630;Dbxref=NCBI_GP:UUF03825.1;Name=UUF03825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449703.1;locus_tag=NDY25_07630;product=ATP-binding cassette domain-containing protein;protein_id=UUF03825.1;transl_table=11 CP098604.1 Genbank gene 1716644 1718503 . + . ID=gene-NDY25_07635;Name=NDY25_07635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07635 CP098604.1 Protein Homology CDS 1716644 1718503 . + 0 ID=cds-UUF03826.1;Parent=gene-NDY25_07635;Dbxref=NCBI_GP:UUF03826.1;Name=UUF03826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091180.1;locus_tag=NDY25_07635;product=M14 family metallopeptidase;protein_id=UUF03826.1;transl_table=11 CP098604.1 Genbank gene 1718574 1719518 . - . ID=gene-NDY25_07640;Name=NDY25_07640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07640 CP098604.1 Protein Homology CDS 1718574 1719518 . - 0 ID=cds-UUF03827.1;Parent=gene-NDY25_07640;Dbxref=NCBI_GP:UUF03827.1;Name=UUF03827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171643.1;locus_tag=NDY25_07640;product=LysR substrate-binding domain-containing protein;protein_id=UUF03827.1;transl_table=11 CP098604.1 Genbank gene 1719628 1720029 . + . ID=gene-NDY25_07645;Name=NDY25_07645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07645 CP098604.1 Protein Homology CDS 1719628 1720029 . + 0 ID=cds-UUF03828.1;Parent=gene-NDY25_07645;Dbxref=NCBI_GP:UUF03828.1;Name=UUF03828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449700.1;locus_tag=NDY25_07645;product=Rid family hydrolase;protein_id=UUF03828.1;transl_table=11 CP098604.1 Genbank gene 1720535 1721719 . + . ID=gene-NDY25_07650;Name=NDY25_07650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07650 CP098604.1 Protein Homology CDS 1720535 1721719 . + 0 ID=cds-UUF04575.1;Parent=gene-NDY25_07650;Dbxref=NCBI_GP:UUF04575.1;Name=UUF04575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931964.1;locus_tag=NDY25_07650;product=hypothetical protein;protein_id=UUF04575.1;transl_table=11 CP098604.1 Genbank gene 1721730 1722158 . + . ID=gene-NDY25_07655;Name=NDY25_07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07655 CP098604.1 Protein Homology CDS 1721730 1722158 . + 0 ID=cds-UUF03829.1;Parent=gene-NDY25_07655;Dbxref=NCBI_GP:UUF03829.1;Name=UUF03829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343040.1;locus_tag=NDY25_07655;product=substrate-binding domain-containing protein;protein_id=UUF03829.1;transl_table=11 CP098604.1 Genbank gene 1722185 1723270 . + . ID=gene-NDY25_07660;Name=NDY25_07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07660 CP098604.1 Protein Homology CDS 1722185 1723270 . + 0 ID=cds-UUF03830.1;Parent=gene-NDY25_07660;Dbxref=NCBI_GP:UUF03830.1;Name=UUF03830.1;Ontology_term=GO:0007165,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: protein motif:HMM:NF012876.2;locus_tag=NDY25_07660;product=HAMP domain-containing protein;protein_id=UUF03830.1;transl_table=11 CP098604.1 Genbank gene 1723414 1724382 . + . ID=gene-NDY25_07665;Name=NDY25_07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07665 CP098604.1 Protein Homology CDS 1723414 1724382 . + 0 ID=cds-UUF04576.1;Parent=gene-NDY25_07665;Dbxref=NCBI_GP:UUF04576.1;Name=UUF04576.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041744100.1;locus_tag=NDY25_07665;product=methyl-accepting chemotaxis protein;protein_id=UUF04576.1;transl_table=11 CP098604.1 Genbank gene 1724649 1724945 . + . ID=gene-NDY25_07670;Name=NDY25_07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07670 CP098604.1 GeneMarkS-2+ CDS 1724649 1724945 . + 0 ID=cds-UUF03831.1;Parent=gene-NDY25_07670;Dbxref=NCBI_GP:UUF03831.1;Name=UUF03831.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07670;product=hypothetical protein;protein_id=UUF03831.1;transl_table=11 CP098604.1 Genbank gene 1724966 1725703 . + . ID=gene-NDY25_07675;Name=NDY25_07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07675 CP098604.1 Protein Homology CDS 1724966 1725703 . + 0 ID=cds-UUF03832.1;Parent=gene-NDY25_07675;Dbxref=NCBI_GP:UUF03832.1;Name=UUF03832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449698.1;locus_tag=NDY25_07675;product=DNA/RNA non-specific endonuclease;protein_id=UUF03832.1;transl_table=11 CP098604.1 Genbank gene 1725823 1726053 . - . ID=gene-NDY25_07680;Name=NDY25_07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07680 CP098604.1 Protein Homology CDS 1725823 1726053 . - 0 ID=cds-UUF03833.1;Parent=gene-NDY25_07680;Dbxref=NCBI_GP:UUF03833.1;Name=UUF03833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365337.1;locus_tag=NDY25_07680;product=DUF1653 domain-containing protein;protein_id=UUF03833.1;transl_table=11 CP098604.1 Genbank gene 1726584 1726829 . + . ID=gene-NDY25_07685;Name=NDY25_07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07685 CP098604.1 Protein Homology CDS 1726584 1726829 . + 0 ID=cds-UUF04577.1;Parent=gene-NDY25_07685;Dbxref=NCBI_GP:UUF04577.1;Name=UUF04577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157380.1;locus_tag=NDY25_07685;product=hypothetical protein;protein_id=UUF04577.1;transl_table=11 CP098604.1 Genbank pseudogene 1726785 1728260 . - . ID=gene-NDY25_07690;Name=NDY25_07690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_07690;pseudo=true CP098604.1 Protein Homology CDS 1726785 1728260 . - 0 ID=cds-NDY25_07690;Parent=gene-NDY25_07690;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449695.1;locus_tag=NDY25_07690;product=SulP family inorganic anion transporter;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1728638 1729414 . - . ID=gene-NDY25_07695;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=NDY25_07695 CP098604.1 Protein Homology CDS 1728638 1729414 . - 0 ID=cds-UUF03834.1;Parent=gene-NDY25_07695;Dbxref=NCBI_GP:UUF03834.1;Name=UUF03834.1;Ontology_term=GO:0006464;gbkey=CDS;gene=map;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157376.1;locus_tag=NDY25_07695;product=type I methionyl aminopeptidase;protein_id=UUF03834.1;transl_table=11 CP098604.1 Genbank gene 1729411 1729623 . - . ID=gene-NDY25_07700;Name=NDY25_07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07700 CP098604.1 Protein Homology CDS 1729411 1729623 . - 0 ID=cds-UUF03835.1;Parent=gene-NDY25_07700;Dbxref=NCBI_GP:UUF03835.1;Name=UUF03835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091192.1;locus_tag=NDY25_07700;product=ParD-like family protein;protein_id=UUF03835.1;transl_table=11 CP098604.1 Genbank gene 1729896 1730966 . + . ID=gene-NDY25_07705;Name=NDY25_07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07705 CP098604.1 Protein Homology CDS 1729896 1730966 . + 0 ID=cds-UUF03836.1;Parent=gene-NDY25_07705;Dbxref=NCBI_GP:UUF03836.1;Name=UUF03836.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449684.1;locus_tag=NDY25_07705;product=acyltransferase;protein_id=UUF03836.1;transl_table=11 CP098604.1 Genbank gene 1731062 1732024 . - . ID=gene-NDY25_07710;Name=NDY25_07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07710 CP098604.1 Protein Homology CDS 1731062 1732024 . - 0 ID=cds-UUF03837.1;Parent=gene-NDY25_07710;Dbxref=NCBI_GP:UUF03837.1;Name=UUF03837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449683.1;locus_tag=NDY25_07710;product=DJ-1/PfpI family protein;protein_id=UUF03837.1;transl_table=11 CP098604.1 Genbank gene 1732091 1733203 . - . ID=gene-NDY25_07715;Name=NDY25_07715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07715 CP098604.1 Protein Homology CDS 1732091 1733203 . - 0 ID=cds-UUF03838.1;Parent=gene-NDY25_07715;Dbxref=NCBI_GP:UUF03838.1;Name=UUF03838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449682.1;locus_tag=NDY25_07715;product=DJ-1/PfpI family protein;protein_id=UUF03838.1;transl_table=11 CP098604.1 Genbank gene 1733352 1734563 . - . ID=gene-NDY25_07720;Name=NDY25_07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07720 CP098604.1 Protein Homology CDS 1733352 1734563 . - 0 ID=cds-UUF03839.1;Parent=gene-NDY25_07720;Dbxref=NCBI_GP:UUF03839.1;Name=UUF03839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994784.1;locus_tag=NDY25_07720;product=MFS transporter;protein_id=UUF03839.1;transl_table=11 CP098604.1 Genbank gene 1734784 1735395 . + . ID=gene-NDY25_07725;Name=NDY25_07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07725 CP098604.1 Protein Homology CDS 1734784 1735395 . + 0 ID=cds-UUF03840.1;Parent=gene-NDY25_07725;Dbxref=NCBI_GP:UUF03840.1;Name=UUF03840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449680.1;locus_tag=NDY25_07725;product=TetR/AcrR family transcriptional regulator;protein_id=UUF03840.1;transl_table=11 CP098604.1 Genbank gene 1735592 1736500 . - . ID=gene-NDY25_07730;Name=NDY25_07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07730 CP098604.1 Protein Homology CDS 1735592 1736500 . - 0 ID=cds-UUF03841.1;Parent=gene-NDY25_07730;Dbxref=NCBI_GP:UUF03841.1;Name=UUF03841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006384676.1;locus_tag=NDY25_07730;product=LysR family transcriptional regulator;protein_id=UUF03841.1;transl_table=11 CP098604.1 Genbank gene 1736611 1737714 . + . ID=gene-NDY25_07735;Name=NDY25_07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07735 CP098604.1 Protein Homology CDS 1736611 1737714 . + 0 ID=cds-UUF03842.1;Parent=gene-NDY25_07735;Dbxref=NCBI_GP:UUF03842.1;Name=UUF03842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449678.1;locus_tag=NDY25_07735;product=alkene reductase;protein_id=UUF03842.1;transl_table=11 CP098604.1 Genbank gene 1737970 1739113 . - . ID=gene-NDY25_07740;Name=NDY25_07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07740 CP098604.1 Protein Homology CDS 1738872 1739113 . - 0 ID=cds-UUF03843.1;Parent=gene-NDY25_07740;Dbxref=NCBI_GP:UUF03843.1;Name=UUF03843.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_07740;product=IS3 family transposase;protein_id=UUF03843.1;transl_table=11 CP098604.1 Protein Homology CDS 1737970 1738873 . - 1 ID=cds-UUF03843.1;Parent=gene-NDY25_07740;Dbxref=NCBI_GP:UUF03843.1;Name=UUF03843.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_07740;product=IS3 family transposase;protein_id=UUF03843.1;transl_table=11 CP098604.1 Genbank gene 1739182 1739979 . - . ID=gene-NDY25_07745;Name=NDY25_07745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07745 CP098604.1 Protein Homology CDS 1739182 1739979 . - 0 ID=cds-UUF03844.1;Parent=gene-NDY25_07745;Dbxref=NCBI_GP:UUF03844.1;Name=UUF03844.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: protein motif:HMM:NF013594.2;locus_tag=NDY25_07745;product=M48 family metalloprotease;protein_id=UUF03844.1;transl_table=11 CP098604.1 Genbank gene 1739976 1740437 . - . ID=gene-NDY25_07750;Name=NDY25_07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07750 CP098604.1 Protein Homology CDS 1739976 1740437 . - 0 ID=cds-UUF03845.1;Parent=gene-NDY25_07750;Dbxref=NCBI_GP:UUF03845.1;Name=UUF03845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450103.1;locus_tag=NDY25_07750;product=hypothetical protein;protein_id=UUF03845.1;transl_table=11 CP098604.1 Genbank gene 1740791 1741393 . - . ID=gene-NDY25_07755;Name=NDY25_07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07755 CP098604.1 Protein Homology CDS 1740791 1741393 . - 0 ID=cds-UUF03846.1;Parent=gene-NDY25_07755;Dbxref=NCBI_GP:UUF03846.1;Name=UUF03846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450104.1;locus_tag=NDY25_07755;product=hypothetical protein;protein_id=UUF03846.1;transl_table=11 CP098604.1 Genbank gene 1741649 1742719 . + . ID=gene-NDY25_07760;Name=NDY25_07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07760 CP098604.1 Protein Homology CDS 1741649 1742719 . + 0 ID=cds-UUF04578.1;Parent=gene-NDY25_07760;Dbxref=NCBI_GP:UUF04578.1;Name=UUF04578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347479.1;locus_tag=NDY25_07760;product=avirulence protein;protein_id=UUF04578.1;transl_table=11 CP098604.1 Genbank gene 1742772 1743338 . - . ID=gene-NDY25_07765;Name=NDY25_07765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07765 CP098604.1 Protein Homology CDS 1742772 1743338 . - 0 ID=cds-UUF03847.1;Parent=gene-NDY25_07765;Dbxref=NCBI_GP:UUF03847.1;Name=UUF03847.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036809.1;locus_tag=NDY25_07765;product=recombinase family protein;protein_id=UUF03847.1;transl_table=11 CP098604.1 Genbank gene 1743520 1743771 . + . ID=gene-NDY25_07770;Name=NDY25_07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07770 CP098604.1 Protein Homology CDS 1743520 1743771 . + 0 ID=cds-UUF03848.1;Parent=gene-NDY25_07770;Dbxref=NCBI_GP:UUF03848.1;Name=UUF03848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1;locus_tag=NDY25_07770;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=UUF03848.1;transl_table=11 CP098604.1 Genbank gene 1743768 1744163 . + . ID=gene-NDY25_07775;Name=NDY25_07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07775 CP098604.1 Protein Homology CDS 1743768 1744163 . + 0 ID=cds-UUF03849.1;Parent=gene-NDY25_07775;Dbxref=NCBI_GP:UUF03849.1;Name=UUF03849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=NDY25_07775;product=type II toxin-antitoxin system VapC family toxin;protein_id=UUF03849.1;transl_table=11 CP098604.1 Genbank pseudogene 1744362 1744685 . + . ID=gene-NDY25_07780;Name=NDY25_07780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_07780;pseudo=true CP098604.1 Protein Homology CDS 1744362 1744685 . + 0 ID=cds-NDY25_07780;Parent=gene-NDY25_07780;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=NDY25_07780;product=transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1744722 1744865 . - . ID=gene-NDY25_07785;Name=NDY25_07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07785 CP098604.1 Protein Homology CDS 1744722 1744865 . - 0 ID=cds-UUF03850.1;Parent=gene-NDY25_07785;Dbxref=NCBI_GP:UUF03850.1;Name=UUF03850.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033894.1;locus_tag=NDY25_07785;product=EexN family lipoprotein;protein_id=UUF03850.1;transl_table=11 CP098604.1 Genbank gene 1744868 1745302 . - . ID=gene-NDY25_07790;Name=NDY25_07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07790 CP098604.1 GeneMarkS-2+ CDS 1744868 1745302 . - 0 ID=cds-UUF03851.1;Parent=gene-NDY25_07790;Dbxref=NCBI_GP:UUF03851.1;Name=UUF03851.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07790;product=hypothetical protein;protein_id=UUF03851.1;transl_table=11 CP098604.1 Genbank gene 1745312 1746022 . - . ID=gene-NDY25_07795;Name=virB5;gbkey=Gene;gene=virB5;gene_biotype=protein_coding;locus_tag=NDY25_07795 CP098604.1 Protein Homology CDS 1745312 1746022 . - 0 ID=cds-UUF03852.1;Parent=gene-NDY25_07795;Dbxref=NCBI_GP:UUF03852.1;Name=UUF03852.1;Ontology_term=GO:0043684;gbkey=CDS;gene=virB5;go_component=type IV secretion system complex|0043684||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449365.1;locus_tag=NDY25_07795;product=P-type DNA transfer protein VirB5;protein_id=UUF03852.1;transl_table=11 CP098604.1 Genbank gene 1746235 1746507 . - . ID=gene-NDY25_07800;Name=NDY25_07800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07800 CP098604.1 Protein Homology CDS 1746235 1746507 . - 0 ID=cds-UUF03853.1;Parent=gene-NDY25_07800;Dbxref=NCBI_GP:UUF03853.1;Name=UUF03853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449364.1;locus_tag=NDY25_07800;product=hypothetical protein;protein_id=UUF03853.1;transl_table=11 CP098604.1 Genbank gene 1746514 1746801 . - . ID=gene-NDY25_07805;Name=NDY25_07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07805 CP098604.1 GeneMarkS-2+ CDS 1746514 1746801 . - 0 ID=cds-UUF03854.1;Parent=gene-NDY25_07805;Dbxref=NCBI_GP:UUF03854.1;Name=UUF03854.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_07805;product=hypothetical protein;protein_id=UUF03854.1;transl_table=11 CP098604.1 Genbank gene 1746967 1747730 . - . ID=gene-NDY25_07810;Name=NDY25_07810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07810 CP098604.1 Protein Homology CDS 1747415 1747730 . - 0 ID=cds-UUF04579.1;Parent=gene-NDY25_07810;Dbxref=NCBI_GP:UUF04579.1;Name=UUF04579.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_07810;product=IS5 family transposase;protein_id=UUF04579.1;transl_table=11 CP098604.1 Protein Homology CDS 1746967 1747415 . - 2 ID=cds-UUF04579.1;Parent=gene-NDY25_07810;Dbxref=NCBI_GP:UUF04579.1;Name=UUF04579.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_07810;product=IS5 family transposase;protein_id=UUF04579.1;transl_table=11 CP098604.1 Genbank pseudogene 1748950 1749907 . - . ID=gene-NDY25_07815;Name=NDY25_07815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_07815;pseudo=true CP098604.1 Protein Homology CDS 1748950 1749907 . - 0 ID=cds-NDY25_07815;Parent=gene-NDY25_07815;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257128.1;locus_tag=NDY25_07815;product=IS5 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1750037 1751017 . + . ID=gene-NDY25_07820;Name=NDY25_07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07820 CP098604.1 Protein Homology CDS 1750037 1751017 . + 0 ID=cds-UUF03855.1;Parent=gene-NDY25_07820;Dbxref=NCBI_GP:UUF03855.1;Name=UUF03855.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_07820;product=IS5 family transposase;protein_id=UUF03855.1;transl_table=11 CP098604.1 Genbank gene 1751133 1752209 . - . ID=gene-NDY25_07825;Name=NDY25_07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07825 CP098604.1 Protein Homology CDS 1751133 1752209 . - 0 ID=cds-UUF03856.1;Parent=gene-NDY25_07825;Dbxref=NCBI_GP:UUF03856.1;Name=UUF03856.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453179.1;locus_tag=NDY25_07825;product=site-specific integrase;protein_id=UUF03856.1;transl_table=11 CP098604.1 Genbank gene 1752295 1752370 . - . ID=gene-NDY25_07830;Name=NDY25_07830;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_07830 CP098604.1 tRNAscan-SE tRNA 1752295 1752370 . - . ID=rna-NDY25_07830;Parent=gene-NDY25_07830;anticodon=(pos:complement(1752335..1752337));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_07830;product=tRNA-Ile CP098604.1 tRNAscan-SE exon 1752295 1752370 . - . ID=exon-NDY25_07830-1;Parent=rna-NDY25_07830;anticodon=(pos:complement(1752335..1752337));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_07830;product=tRNA-Ile CP098604.1 Genbank gene 1752651 1752974 . - . ID=gene-NDY25_07835;Name=NDY25_07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07835 CP098604.1 Protein Homology CDS 1752651 1752974 . - 0 ID=cds-UUF03857.1;Parent=gene-NDY25_07835;Dbxref=NCBI_GP:UUF03857.1;Name=UUF03857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376816.1;locus_tag=NDY25_07835;product=hypothetical protein;protein_id=UUF03857.1;transl_table=11 CP098604.1 Genbank gene 1753149 1755026 . - . ID=gene-NDY25_07840;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=NDY25_07840 CP098604.1 Protein Homology CDS 1753149 1755026 . - 0 ID=cds-UUF03858.1;Parent=gene-NDY25_07840;Dbxref=NCBI_GP:UUF03858.1;Name=UUF03858.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157069.1;locus_tag=NDY25_07840;product=RNA polymerase sigma factor RpoD;protein_id=UUF03858.1;transl_table=11 CP098604.1 Genbank gene 1755132 1755572 . - . ID=gene-NDY25_07845;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=NDY25_07845 CP098604.1 Protein Homology CDS 1755132 1755572 . - 0 ID=cds-UUF03859.1;Parent=gene-NDY25_07845;Dbxref=NCBI_GP:UUF03859.1;Name=UUF03859.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453176.1;locus_tag=NDY25_07845;product=D-aminoacyl-tRNA deacylase;protein_id=UUF03859.1;transl_table=11 CP098604.1 Genbank gene 1755571 1756587 . + . ID=gene-NDY25_07850;Name=NDY25_07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07850 CP098604.1 Protein Homology CDS 1755571 1756587 . + 0 ID=cds-UUF03860.1;Parent=gene-NDY25_07850;Dbxref=NCBI_GP:UUF03860.1;Name=UUF03860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348771.1;locus_tag=NDY25_07850;product=lauroyl acyltransferase;protein_id=UUF03860.1;transl_table=11 CP098604.1 Genbank gene 1756829 1757350 . - . ID=gene-NDY25_07855;Name=NDY25_07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07855 CP098604.1 Protein Homology CDS 1756829 1757350 . - 0 ID=cds-UUF03861.1;Parent=gene-NDY25_07855;Dbxref=NCBI_GP:UUF03861.1;Name=UUF03861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484403.1;locus_tag=NDY25_07855;product=GNAT family N-acetyltransferase;protein_id=UUF03861.1;transl_table=11 CP098604.1 Genbank gene 1757596 1758729 . + . ID=gene-NDY25_07860;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=NDY25_07860 CP098604.1 Protein Homology CDS 1757596 1758729 . + 0 ID=cds-UUF03862.1;Parent=gene-NDY25_07860;Dbxref=NCBI_GP:UUF03862.1;Name=UUF03862.1;gbkey=CDS;gene=ribA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162247.1;locus_tag=NDY25_07860;product=GTP cyclohydrolase II RibA;protein_id=UUF03862.1;transl_table=11 CP098604.1 Genbank gene 1758869 1759345 . + . ID=gene-NDY25_07865;Name=NDY25_07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07865 CP098604.1 Protein Homology CDS 1758869 1759345 . + 0 ID=cds-UUF03863.1;Parent=gene-NDY25_07865;Dbxref=NCBI_GP:UUF03863.1;Name=UUF03863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091212.1;locus_tag=NDY25_07865;product=PH domain-containing protein;protein_id=UUF03863.1;transl_table=11 CP098604.1 Genbank gene 1759342 1760847 . + . ID=gene-NDY25_07870;Name=NDY25_07870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07870 CP098604.1 Protein Homology CDS 1759342 1760847 . + 0 ID=cds-UUF03864.1;Parent=gene-NDY25_07870;Dbxref=NCBI_GP:UUF03864.1;Name=UUF03864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157062.1;locus_tag=NDY25_07870;product=PH domain-containing protein;protein_id=UUF03864.1;transl_table=11 CP098604.1 Genbank gene 1760959 1762017 . - . ID=gene-NDY25_07875;Name=NDY25_07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07875 CP098604.1 Protein Homology CDS 1760959 1762017 . - 0 ID=cds-UUF03865.1;Parent=gene-NDY25_07875;Dbxref=NCBI_GP:UUF03865.1;Name=UUF03865.1;Ontology_term=GO:0047355,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=CDP-glycerol glycerophosphotransferase activity|0047355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157061.1;locus_tag=NDY25_07875;product=CDP-glycerol glycerophosphotransferase family protein;protein_id=UUF03865.1;transl_table=11 CP098604.1 Genbank gene 1762018 1762842 . + . ID=gene-NDY25_07880;Name=NDY25_07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07880 CP098604.1 Protein Homology CDS 1762018 1762842 . + 0 ID=cds-UUF03866.1;Parent=gene-NDY25_07880;Dbxref=NCBI_GP:UUF03866.1;Name=UUF03866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115138.1;locus_tag=NDY25_07880;product=glycosyltransferase family 2 protein;protein_id=UUF03866.1;transl_table=11 CP098604.1 Genbank gene 1762827 1764098 . - . ID=gene-NDY25_07885;Name=NDY25_07885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07885 CP098604.1 Protein Homology CDS 1762827 1764098 . - 0 ID=cds-UUF03867.1;Parent=gene-NDY25_07885;Dbxref=NCBI_GP:UUF03867.1;Name=UUF03867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453167.1;locus_tag=NDY25_07885;product=O-antigen ligase family protein;protein_id=UUF03867.1;transl_table=11 CP098604.1 Genbank gene 1764251 1765972 . - . ID=gene-NDY25_07890;Name=NDY25_07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07890 CP098604.1 Protein Homology CDS 1764251 1765972 . - 0 ID=cds-UUF03868.1;Parent=gene-NDY25_07890;Dbxref=NCBI_GP:UUF03868.1;Name=UUF03868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091215.1;locus_tag=NDY25_07890;product=glycosyltransferase family 39 protein;protein_id=UUF03868.1;transl_table=11 CP098604.1 Genbank gene 1766020 1767330 . - . ID=gene-NDY25_07895;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=NDY25_07895 CP098604.1 Protein Homology CDS 1766020 1767330 . - 0 ID=cds-UUF03869.1;Parent=gene-NDY25_07895;Dbxref=NCBI_GP:UUF03869.1;Name=UUF03869.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of transcription%2C DNA-templated|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849283.1;locus_tag=NDY25_07895;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=UUF03869.1;transl_table=11 CP098604.1 Genbank gene 1767330 1768253 . - . ID=gene-NDY25_07900;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=NDY25_07900 CP098604.1 Protein Homology CDS 1767330 1768253 . - 0 ID=cds-UUF03870.1;Parent=gene-NDY25_07900;Dbxref=NCBI_GP:UUF03870.1;Name=UUF03870.1;Ontology_term=GO:0006431,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921922.1;locus_tag=NDY25_07900;product=methionyl-tRNA formyltransferase;protein_id=UUF03870.1;transl_table=11 CP098604.1 Genbank gene 1768356 1768868 . - . ID=gene-NDY25_07905;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=NDY25_07905 CP098604.1 Protein Homology CDS 1768356 1768868 . - 0 ID=cds-UUF03871.1;Parent=gene-NDY25_07905;Dbxref=NCBI_GP:UUF03871.1;Name=UUF03871.1;Ontology_term=GO:0006464,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911379.1;locus_tag=NDY25_07905;product=peptide deformylase;protein_id=UUF03871.1;transl_table=11 CP098604.1 Genbank gene 1769001 1770137 . + . ID=gene-NDY25_07910;Name=NDY25_07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07910 CP098604.1 Protein Homology CDS 1769001 1770137 . + 0 ID=cds-UUF03872.1;Parent=gene-NDY25_07910;Dbxref=NCBI_GP:UUF03872.1;Name=UUF03872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927359.1;locus_tag=NDY25_07910;product=LysM peptidoglycan-binding domain-containing protein;protein_id=UUF03872.1;transl_table=11 CP098604.1 Genbank gene 1770212 1771348 . + . ID=gene-NDY25_07915;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=NDY25_07915 CP098604.1 Protein Homology CDS 1770212 1771348 . + 0 ID=cds-UUF03873.1;Parent=gene-NDY25_07915;Dbxref=NCBI_GP:UUF03873.1;Name=UUF03873.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091219.1;locus_tag=NDY25_07915;product=DNA-processing protein DprA;protein_id=UUF03873.1;transl_table=11 CP098604.1 Genbank gene 1771392 1771865 . + . ID=gene-NDY25_07920;Name=NDY25_07920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07920 CP098604.1 Protein Homology CDS 1771392 1771865 . + 0 ID=cds-UUF03874.1;Parent=gene-NDY25_07920;Dbxref=NCBI_GP:UUF03874.1;Name=UUF03874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159357.1;locus_tag=NDY25_07920;product=DUF494 family protein;protein_id=UUF03874.1;transl_table=11 CP098604.1 Genbank gene 1771906 1772631 . + . ID=gene-NDY25_07925;Name=NDY25_07925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07925 CP098604.1 Protein Homology CDS 1771906 1772631 . + 0 ID=cds-UUF03875.1;Parent=gene-NDY25_07925;Dbxref=NCBI_GP:UUF03875.1;Name=UUF03875.1;Ontology_term=GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348786.1;locus_tag=NDY25_07925;product=pilin;protein_id=UUF03875.1;transl_table=11 CP098604.1 Genbank gene 1772692 1773924 . + . ID=gene-NDY25_07930;Name=NDY25_07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07930 CP098604.1 Protein Homology CDS 1772692 1773924 . + 0 ID=cds-UUF03876.1;Parent=gene-NDY25_07930;Dbxref=NCBI_GP:UUF03876.1;Name=UUF03876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112322.1;locus_tag=NDY25_07930;product=RDD family protein;protein_id=UUF03876.1;transl_table=11 CP098604.1 Genbank gene 1774107 1776599 . + . ID=gene-NDY25_07935;Name=NDY25_07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07935 CP098604.1 Protein Homology CDS 1774107 1776599 . + 0 ID=cds-UUF03877.1;Parent=gene-NDY25_07935;Dbxref=NCBI_GP:UUF03877.1;Name=UUF03877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911395.1;locus_tag=NDY25_07935;product=DNA topoisomerase I;protein_id=UUF03877.1;transl_table=11 CP098604.1 Genbank pseudogene 1776608 1777182 . + . ID=gene-NDY25_07940;Name=NDY25_07940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_07940;pseudo=true CP098604.1 Protein Homology CDS 1776608 1777182 . + 0 ID=cds-NDY25_07940;Parent=gene-NDY25_07940;Note=frameshifted;Ontology_term=GO:0003725;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA;inference=COORDINATES: protein motif:HMM:NF013468.2;locus_tag=NDY25_07940;product=Sua5/YciO/YrdC/YwlC family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1777400 1778194 . + . ID=gene-NDY25_07945;Name=NDY25_07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07945 CP098604.1 Protein Homology CDS 1777400 1778194 . + 0 ID=cds-UUF03878.1;Parent=gene-NDY25_07945;Dbxref=NCBI_GP:UUF03878.1;Name=UUF03878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572028.1;locus_tag=NDY25_07945;product=DUF4124 domain-containing protein;protein_id=UUF03878.1;transl_table=11 CP098604.1 Genbank pseudogene 1778191 1778857 . + . ID=gene-NDY25_07950;Name=NDY25_07950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_07950;pseudo=true CP098604.1 Protein Homology CDS 1778191 1778857 . + 0 ID=cds-NDY25_07950;Parent=gene-NDY25_07950;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114533.1;locus_tag=NDY25_07950;product=DUF4124 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1779030 1779806 . - . ID=gene-NDY25_07955;Name=NDY25_07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07955 CP098604.1 Protein Homology CDS 1779030 1779806 . - 0 ID=cds-UUF03879.1;Parent=gene-NDY25_07955;Dbxref=NCBI_GP:UUF03879.1;Name=UUF03879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903673.1;locus_tag=NDY25_07955;product=SDR family oxidoreductase;protein_id=UUF03879.1;transl_table=11 CP098604.1 Genbank gene 1779913 1780128 . + . ID=gene-NDY25_07960;Name=NDY25_07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07960 CP098604.1 Protein Homology CDS 1779913 1780128 . + 0 ID=cds-UUF03880.1;Parent=gene-NDY25_07960;Dbxref=NCBI_GP:UUF03880.1;Name=UUF03880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157045.1;locus_tag=NDY25_07960;product=hypothetical protein;protein_id=UUF03880.1;transl_table=11 CP098604.1 Genbank gene 1780272 1782170 . - . ID=gene-NDY25_07965;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=NDY25_07965 CP098604.1 Protein Homology CDS 1780272 1782170 . - 0 ID=cds-UUF03881.1;Parent=gene-NDY25_07965;Dbxref=NCBI_GP:UUF03881.1;Name=UUF03881.1;Ontology_term=GO:0006465,GO:0006508,GO:0008233,GO:0016021;gbkey=CDS;gene=sppA;go_component=integral component of membrane|0016021||IEA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300058.1;locus_tag=NDY25_07965;product=signal peptide peptidase SppA;protein_id=UUF03881.1;transl_table=11 CP098604.1 Genbank gene 1782255 1783631 . - . ID=gene-NDY25_07970;Name=NDY25_07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07970 CP098604.1 Protein Homology CDS 1782255 1783631 . - 0 ID=cds-UUF03882.1;Parent=gene-NDY25_07970;Dbxref=NCBI_GP:UUF03882.1;Name=UUF03882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091226.1;locus_tag=NDY25_07970;product=MATE family efflux transporter;protein_id=UUF03882.1;transl_table=11 CP098604.1 Genbank gene 1783805 1784437 . - . ID=gene-NDY25_07975;Name=NDY25_07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07975 CP098604.1 Protein Homology CDS 1783805 1784437 . - 0 ID=cds-UUF03883.1;Parent=gene-NDY25_07975;Dbxref=NCBI_GP:UUF03883.1;Name=UUF03883.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463666.1;locus_tag=NDY25_07975;product=DUF3106 domain-containing protein;protein_id=UUF03883.1;transl_table=11 CP098604.1 Genbank gene 1784424 1785461 . - . ID=gene-NDY25_07980;Name=NDY25_07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07980 CP098604.1 Protein Homology CDS 1784424 1785461 . - 0 ID=cds-UUF03884.1;Parent=gene-NDY25_07980;Dbxref=NCBI_GP:UUF03884.1;Name=UUF03884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038846.1;locus_tag=NDY25_07980;product=hypothetical protein;protein_id=UUF03884.1;transl_table=11 CP098604.1 Genbank gene 1785932 1788154 . + . ID=gene-NDY25_07985;Name=NDY25_07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07985 CP098604.1 Protein Homology CDS 1785932 1788154 . + 0 ID=cds-UUF03885.1;Parent=gene-NDY25_07985;Dbxref=NCBI_GP:UUF03885.1;Name=UUF03885.1;Ontology_term=GO:0006260,GO:0032508,GO:0003678;gbkey=CDS;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA,DNA duplex unwinding|0032508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167545.1;locus_tag=NDY25_07985;product=primosomal protein N';protein_id=UUF03885.1;transl_table=11 CP098604.1 Genbank gene 1788197 1788960 . + . ID=gene-NDY25_07990;Name=NDY25_07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07990 CP098604.1 Protein Homology CDS 1788197 1788512 . + 0 ID=cds-UUF04580.1;Parent=gene-NDY25_07990;Dbxref=NCBI_GP:UUF04580.1;Name=UUF04580.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_07990;product=IS5 family transposase;protein_id=UUF04580.1;transl_table=11 CP098604.1 Protein Homology CDS 1788512 1788960 . + 2 ID=cds-UUF04580.1;Parent=gene-NDY25_07990;Dbxref=NCBI_GP:UUF04580.1;Name=UUF04580.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_07990;product=IS5 family transposase;protein_id=UUF04580.1;transl_table=11 CP098604.1 Genbank gene 1789358 1790014 . - . ID=gene-NDY25_07995;Name=NDY25_07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_07995 CP098604.1 Protein Homology CDS 1789358 1790014 . - 0 ID=cds-UUF03886.1;Parent=gene-NDY25_07995;Dbxref=NCBI_GP:UUF03886.1;Name=UUF03886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453146.1;locus_tag=NDY25_07995;product=glutathione S-transferase;protein_id=UUF03886.1;transl_table=11 CP098604.1 Genbank gene 1790017 1790847 . - . ID=gene-NDY25_08000;Name=NDY25_08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08000 CP098604.1 Protein Homology CDS 1790017 1790847 . - 0 ID=cds-UUF03887.1;Parent=gene-NDY25_08000;Dbxref=NCBI_GP:UUF03887.1;Name=UUF03887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453145.1;locus_tag=NDY25_08000;product=NYN domain-containing protein;protein_id=UUF03887.1;transl_table=11 CP098604.1 Genbank gene 1790844 1791374 . - . ID=gene-NDY25_08005;Name=NDY25_08005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08005 CP098604.1 Protein Homology CDS 1790844 1791374 . - 0 ID=cds-UUF03888.1;Parent=gene-NDY25_08005;Dbxref=NCBI_GP:UUF03888.1;Name=UUF03888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506374.1;locus_tag=NDY25_08005;product=hypothetical protein;protein_id=UUF03888.1;transl_table=11 CP098604.1 Genbank gene 1791493 1792785 . + . ID=gene-NDY25_08010;Name=NDY25_08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08010 CP098604.1 Protein Homology CDS 1791493 1792785 . + 0 ID=cds-UUF03889.1;Parent=gene-NDY25_08010;Dbxref=NCBI_GP:UUF03889.1;Name=UUF03889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157036.1;locus_tag=NDY25_08010;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=UUF03889.1;transl_table=11 CP098604.1 Genbank gene 1792838 1793452 . + . ID=gene-NDY25_08015;Name=NDY25_08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08015 CP098604.1 Protein Homology CDS 1792838 1793452 . + 0 ID=cds-UUF03890.1;Parent=gene-NDY25_08015;Dbxref=NCBI_GP:UUF03890.1;Name=UUF03890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971319.1;locus_tag=NDY25_08015;product=trimeric intracellular cation channel family protein;protein_id=UUF03890.1;transl_table=11 CP098604.1 Genbank gene 1793598 1794473 . - . ID=gene-NDY25_08020;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=NDY25_08020 CP098604.1 Protein Homology CDS 1793598 1794473 . - 0 ID=cds-UUF03891.1;Parent=gene-NDY25_08020;Dbxref=NCBI_GP:UUF03891.1;Name=UUF03891.1;Ontology_term=GO:0006352,GO:0016987;gbkey=CDS;gene=rpoH;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803651.1;locus_tag=NDY25_08020;product=RNA polymerase sigma factor RpoH;protein_id=UUF03891.1;transl_table=11 CP098604.1 Genbank gene 1794671 1795396 . - . ID=gene-NDY25_08025;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=NDY25_08025 CP098604.1 Protein Homology CDS 1794671 1795396 . - 0 ID=cds-UUF04581.1;Parent=gene-NDY25_08025;Dbxref=NCBI_GP:UUF04581.1;Name=UUF04581.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506372.1;locus_tag=NDY25_08025;product=uracil-DNA glycosylase;protein_id=UUF04581.1;transl_table=11 CP098604.1 Genbank gene 1795411 1796253 . - . ID=gene-NDY25_08030;Name=NDY25_08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08030 CP098604.1 Protein Homology CDS 1795411 1796253 . - 0 ID=cds-UUF03892.1;Parent=gene-NDY25_08030;Dbxref=NCBI_GP:UUF03892.1;Name=UUF03892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903686.1;locus_tag=NDY25_08030;product=response regulator;protein_id=UUF03892.1;transl_table=11 CP098604.1 Genbank gene 1796262 1797212 . - . ID=gene-NDY25_08035;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=NDY25_08035 CP098604.1 Protein Homology CDS 1796262 1797212 . - 0 ID=cds-UUF03893.1;Parent=gene-NDY25_08035;Dbxref=NCBI_GP:UUF03893.1;Name=UUF03893.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484495.1;locus_tag=NDY25_08035;product=permease-like cell division protein FtsX;protein_id=UUF03893.1;transl_table=11 CP098604.1 Genbank gene 1797209 1797895 . - . ID=gene-NDY25_08040;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=NDY25_08040 CP098604.1 Protein Homology CDS 1797209 1797895 . - 0 ID=cds-UUF03894.1;Parent=gene-NDY25_08040;Dbxref=NCBI_GP:UUF03894.1;Name=UUF03894.1;Ontology_term=GO:0000910,GO:0006810,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA,transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484499.1;locus_tag=NDY25_08040;product=cell division ATP-binding protein FtsE;protein_id=UUF03894.1;transl_table=11 CP098604.1 Genbank gene 1797971 1799707 . - . ID=gene-NDY25_08045;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=NDY25_08045 CP098604.1 Protein Homology CDS 1797971 1799707 . - 0 ID=cds-UUF03895.1;Parent=gene-NDY25_08045;Dbxref=NCBI_GP:UUF03895.1;Name=UUF03895.1;gbkey=CDS;gene=rhlB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157031.1;locus_tag=NDY25_08045;product=ATP-dependent RNA helicase RhlB;protein_id=UUF03895.1;transl_table=11 CP098604.1 Genbank gene 1799906 1800247 . + . ID=gene-NDY25_08050;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=NDY25_08050 CP098604.1 Protein Homology CDS 1799906 1800247 . + 0 ID=cds-UUF03896.1;Parent=gene-NDY25_08050;Dbxref=NCBI_GP:UUF03896.1;Name=UUF03896.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159364.1;locus_tag=NDY25_08050;product=thioredoxin TrxA;protein_id=UUF03896.1;transl_table=11 CP098604.1 Genbank gene 1800468 1802381 . + . ID=gene-NDY25_08055;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=NDY25_08055 CP098604.1 Protein Homology CDS 1800468 1802381 . + 0 ID=cds-UUF03897.1;Parent=gene-NDY25_08055;Dbxref=NCBI_GP:UUF03897.1;Name=UUF03897.1;Ontology_term=GO:0006353,GO:0004386,GO:0008186;gbkey=CDS;gene=rho;go_function=helicase activity|0004386||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription%2C termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171708.1;locus_tag=NDY25_08055;product=transcription termination factor Rho;protein_id=UUF03897.1;transl_table=11 CP098604.1 Genbank gene 1803087 1803971 . - . ID=gene-NDY25_08060;Name=NDY25_08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08060 CP098604.1 Protein Homology CDS 1803087 1803971 . - 0 ID=cds-UUF03898.1;Parent=gene-NDY25_08060;Dbxref=NCBI_GP:UUF03898.1;Name=UUF03898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171707.1;locus_tag=NDY25_08060;product=hypothetical protein;protein_id=UUF03898.1;transl_table=11 CP098604.1 Genbank gene 1804152 1805453 . - . ID=gene-NDY25_08065;Name=NDY25_08065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08065 CP098604.1 Protein Homology CDS 1804152 1805453 . - 0 ID=cds-UUF03899.1;Parent=gene-NDY25_08065;Dbxref=NCBI_GP:UUF03899.1;Name=UUF03899.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012264.2;locus_tag=NDY25_08065;product=cytochrome c;protein_id=UUF03899.1;transl_table=11 CP098604.1 Genbank gene 1805464 1806039 . - . ID=gene-NDY25_08070;Name=NDY25_08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08070 CP098604.1 Protein Homology CDS 1805464 1806039 . - 0 ID=cds-UUF03900.1;Parent=gene-NDY25_08070;Dbxref=NCBI_GP:UUF03900.1;Name=UUF03900.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014667.2;locus_tag=NDY25_08070;product=SCO family protein;protein_id=UUF03900.1;transl_table=11 CP098604.1 Genbank gene 1806036 1806665 . - . ID=gene-NDY25_08075;Name=NDY25_08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08075 CP098604.1 Protein Homology CDS 1806036 1806665 . - 0 ID=cds-UUF03901.1;Parent=gene-NDY25_08075;Dbxref=NCBI_GP:UUF03901.1;Name=UUF03901.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014667.2;locus_tag=NDY25_08075;product=SCO family protein;protein_id=UUF03901.1;transl_table=11 CP098604.1 Genbank gene 1806666 1808600 . - . ID=gene-NDY25_08080;Name=NDY25_08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08080 CP098604.1 GeneMarkS-2+ CDS 1806666 1808600 . - 0 ID=cds-UUF03902.1;Parent=gene-NDY25_08080;Dbxref=NCBI_GP:UUF03902.1;Name=UUF03902.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_08080;product=hypothetical protein;protein_id=UUF03902.1;transl_table=11 CP098604.1 Genbank gene 1808600 1815313 . - . ID=gene-NDY25_08085;Name=NDY25_08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08085 CP098604.1 GeneMarkS-2+ CDS 1808600 1815313 . - 0 ID=cds-UUF03903.1;Parent=gene-NDY25_08085;Dbxref=NCBI_GP:UUF03903.1;Name=UUF03903.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_08085;product=hypothetical protein;protein_id=UUF03903.1;transl_table=11 CP098604.1 Genbank gene 1815764 1817503 . - . ID=gene-NDY25_08090;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=NDY25_08090 CP098604.1 Protein Homology CDS 1815764 1817503 . - 0 ID=cds-UUF03904.1;Parent=gene-NDY25_08090;Dbxref=NCBI_GP:UUF03904.1;Name=UUF03904.1;Ontology_term=GO:0006006,GO:0008772,GO:0016791;gbkey=CDS;gene=aceK;go_function=[isocitrate dehydrogenase (NADP+)] kinase activity|0008772||IEA,phosphatase activity|0016791||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160169.1;locus_tag=NDY25_08090;product=bifunctional isocitrate dehydrogenase kinase/phosphatase;protein_id=UUF03904.1;transl_table=11 CP098604.1 Genbank gene 1818061 1818645 . + . ID=gene-NDY25_08095;Name=NDY25_08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08095 CP098604.1 Protein Homology CDS 1818061 1818645 . + 0 ID=cds-UUF03905.1;Parent=gene-NDY25_08095;Dbxref=NCBI_GP:UUF03905.1;Name=UUF03905.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012422.2;locus_tag=NDY25_08095;product=response regulator transcription factor;protein_id=UUF03905.1;transl_table=11 CP098604.1 Genbank gene 1818642 1820267 . - . ID=gene-NDY25_08100;Name=NDY25_08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08100 CP098604.1 Protein Homology CDS 1818642 1820267 . - 0 ID=cds-UUF03906.1;Parent=gene-NDY25_08100;Dbxref=NCBI_GP:UUF03906.1;Name=UUF03906.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012862.2;locus_tag=NDY25_08100;product=caspase family protein;protein_id=UUF03906.1;transl_table=11 CP098604.1 Genbank gene 1820628 1822859 . - . ID=gene-NDY25_08105;Name=NDY25_08105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08105 CP098604.1 Protein Homology CDS 1820628 1822859 . - 0 ID=cds-UUF03907.1;Parent=gene-NDY25_08105;Dbxref=NCBI_GP:UUF03907.1;Name=UUF03907.1;Ontology_term=GO:0006099,GO:0004450;gbkey=CDS;go_function=isocitrate dehydrogenase (NADP+) activity|0004450||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157024.1;locus_tag=NDY25_08105;product=NADP-dependent isocitrate dehydrogenase;protein_id=UUF03907.1;transl_table=11 CP098604.1 Genbank gene 1823291 1823845 . - . ID=gene-NDY25_08110;Name=NDY25_08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08110 CP098604.1 Protein Homology CDS 1823291 1823845 . - 0 ID=cds-UUF03908.1;Parent=gene-NDY25_08110;Dbxref=NCBI_GP:UUF03908.1;Name=UUF03908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157023.1;locus_tag=NDY25_08110;product=hypothetical protein;protein_id=UUF03908.1;transl_table=11 CP098604.1 Genbank gene 1823936 1824229 . - . ID=gene-NDY25_08115;Name=NDY25_08115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08115 CP098604.1 Protein Homology CDS 1823936 1824229 . - 0 ID=cds-UUF03909.1;Parent=gene-NDY25_08115;Dbxref=NCBI_GP:UUF03909.1;Name=UUF03909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923039.1;locus_tag=NDY25_08115;product=LysM peptidoglycan-binding domain-containing protein;protein_id=UUF03909.1;transl_table=11 CP098604.1 Genbank gene 1824333 1825148 . - . ID=gene-NDY25_08120;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=NDY25_08120 CP098604.1 Protein Homology CDS 1824333 1825148 . - 0 ID=cds-UUF03910.1;Parent=gene-NDY25_08120;Dbxref=NCBI_GP:UUF03910.1;Name=UUF03910.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171998.1;locus_tag=NDY25_08120;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=UUF03910.1;transl_table=11 CP098604.1 Genbank gene 1825314 1826630 . - . ID=gene-NDY25_08125;Name=NDY25_08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08125 CP098604.1 Protein Homology CDS 1825314 1826630 . - 0 ID=cds-UUF03911.1;Parent=gene-NDY25_08125;Dbxref=NCBI_GP:UUF03911.1;Name=UUF03911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304562.1;locus_tag=NDY25_08125;product=M20 family metallopeptidase;protein_id=UUF03911.1;transl_table=11 CP098604.1 Genbank gene 1826887 1828128 . + . ID=gene-NDY25_08130;Name=NDY25_08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08130 CP098604.1 Protein Homology CDS 1826887 1828128 . + 0 ID=cds-UUF03912.1;Parent=gene-NDY25_08130;Dbxref=NCBI_GP:UUF03912.1;Name=UUF03912.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849343.1;locus_tag=NDY25_08130;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF03912.1;transl_table=11 CP098604.1 Genbank gene 1828222 1831470 . + . ID=gene-NDY25_08135;Name=NDY25_08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08135 CP098604.1 Protein Homology CDS 1828222 1831470 . + 0 ID=cds-UUF03913.1;Parent=gene-NDY25_08135;Dbxref=NCBI_GP:UUF03913.1;Name=UUF03913.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238036.1;locus_tag=NDY25_08135;product=efflux RND transporter permease subunit;protein_id=UUF03913.1;transl_table=11 CP098604.1 Genbank gene 1831601 1834741 . + . ID=gene-NDY25_08140;Name=NDY25_08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08140 CP098604.1 Protein Homology CDS 1831601 1834741 . + 0 ID=cds-UUF03914.1;Parent=gene-NDY25_08140;Dbxref=NCBI_GP:UUF03914.1;Name=UUF03914.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171705.1;locus_tag=NDY25_08140;product=efflux RND transporter permease subunit;protein_id=UUF03914.1;transl_table=11 CP098604.1 Genbank gene 1836025 1837392 . - . ID=gene-NDY25_08145;Name=NDY25_08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08145 CP098604.1 Protein Homology CDS 1836025 1837392 . - 0 ID=cds-UUF03915.1;Parent=gene-NDY25_08145;Dbxref=NCBI_GP:UUF03915.1;Name=UUF03915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007973536.1;locus_tag=NDY25_08145;product=VOC family protein;protein_id=UUF03915.1;transl_table=11 CP098604.1 Genbank gene 1837725 1838345 . - . ID=gene-NDY25_08150;Name=NDY25_08150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08150 CP098604.1 Protein Homology CDS 1837725 1838345 . - 0 ID=cds-UUF04582.1;Parent=gene-NDY25_08150;Dbxref=NCBI_GP:UUF04582.1;Name=UUF04582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112508.1;locus_tag=NDY25_08150;product=hypothetical protein;protein_id=UUF04582.1;transl_table=11 CP098604.1 Genbank gene 1838516 1839103 . - . ID=gene-NDY25_08155;Name=NDY25_08155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08155 CP098604.1 Protein Homology CDS 1838516 1839103 . - 0 ID=cds-UUF03916.1;Parent=gene-NDY25_08155;Dbxref=NCBI_GP:UUF03916.1;Name=UUF03916.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157015.1;locus_tag=NDY25_08155;product=hypothetical protein;protein_id=UUF03916.1;transl_table=11 CP098604.1 Genbank gene 1839212 1839970 . - . ID=gene-NDY25_08160;Name=NDY25_08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08160 CP098604.1 Protein Homology CDS 1839212 1839970 . - 0 ID=cds-UUF03917.1;Parent=gene-NDY25_08160;Dbxref=NCBI_GP:UUF03917.1;Name=UUF03917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903158.1;locus_tag=NDY25_08160;product=HAD family hydrolase;protein_id=UUF03917.1;transl_table=11 CP098604.1 Genbank gene 1840008 1840412 . - . ID=gene-NDY25_08165;Name=NDY25_08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08165 CP098604.1 Protein Homology CDS 1840008 1840412 . - 0 ID=cds-UUF04583.1;Parent=gene-NDY25_08165;Dbxref=NCBI_GP:UUF04583.1;Name=UUF04583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157013.1;locus_tag=NDY25_08165;product=EF-hand domain-containing protein;protein_id=UUF04583.1;transl_table=11 CP098604.1 Genbank gene 1840685 1841044 . - . ID=gene-NDY25_08170;Name=NDY25_08170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08170 CP098604.1 Protein Homology CDS 1840685 1841044 . - 0 ID=cds-UUF03918.1;Parent=gene-NDY25_08170;Dbxref=NCBI_GP:UUF03918.1;Name=UUF03918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157012.1;locus_tag=NDY25_08170;product=EF-hand domain-containing protein;protein_id=UUF03918.1;transl_table=11 CP098604.1 Genbank gene 1841270 1841647 . - . ID=gene-NDY25_08175;Name=NDY25_08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08175 CP098604.1 Protein Homology CDS 1841270 1841647 . - 0 ID=cds-UUF03919.1;Parent=gene-NDY25_08175;Dbxref=NCBI_GP:UUF03919.1;Name=UUF03919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911463.1;locus_tag=NDY25_08175;product=hypothetical protein;protein_id=UUF03919.1;transl_table=11 CP098604.1 Genbank gene 1841785 1841982 . - . ID=gene-NDY25_08180;Name=NDY25_08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08180 CP098604.1 Protein Homology CDS 1841785 1841982 . - 0 ID=cds-UUF03920.1;Parent=gene-NDY25_08180;Dbxref=NCBI_GP:UUF03920.1;Name=UUF03920.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903162.1;locus_tag=NDY25_08180;product=CPXCG motif-containing cysteine-rich protein;protein_id=UUF03920.1;transl_table=11 CP098604.1 Genbank gene 1842133 1842837 . - . ID=gene-NDY25_08185;Name=NDY25_08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08185 CP098604.1 Protein Homology CDS 1842133 1842837 . - 0 ID=cds-UUF03921.1;Parent=gene-NDY25_08185;Dbxref=NCBI_GP:UUF03921.1;Name=UUF03921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038882.1;locus_tag=NDY25_08185;product=M15 family metallopeptidase;protein_id=UUF03921.1;transl_table=11 CP098604.1 Genbank gene 1843158 1845128 . - . ID=gene-NDY25_08190;Name=NDY25_08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08190 CP098604.1 Protein Homology CDS 1843158 1845128 . - 0 ID=cds-UUF03922.1;Parent=gene-NDY25_08190;Dbxref=NCBI_GP:UUF03922.1;Name=UUF03922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003480679.1;locus_tag=NDY25_08190;product=peptidoglycan-binding protein;protein_id=UUF03922.1;transl_table=11 CP098604.1 Genbank gene 1845282 1846058 . - . ID=gene-NDY25_08195;Name=NDY25_08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08195 CP098604.1 Protein Homology CDS 1845282 1846058 . - 0 ID=cds-UUF03923.1;Parent=gene-NDY25_08195;Dbxref=NCBI_GP:UUF03923.1;Name=UUF03923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340166.1;locus_tag=NDY25_08195;product=hypothetical protein;protein_id=UUF03923.1;transl_table=11 CP098604.1 Genbank gene 1846431 1847348 . - . ID=gene-NDY25_08200;Name=NDY25_08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08200 CP098604.1 Protein Homology CDS 1846431 1847348 . - 0 ID=cds-UUF03924.1;Parent=gene-NDY25_08200;Dbxref=NCBI_GP:UUF03924.1;Name=UUF03924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439427.1;locus_tag=NDY25_08200;product=hypothetical protein;protein_id=UUF03924.1;transl_table=11 CP098604.1 Genbank gene 1847522 1848325 . - . ID=gene-NDY25_08205;Name=NDY25_08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08205 CP098604.1 Protein Homology CDS 1847522 1848325 . - 0 ID=cds-UUF03925.1;Parent=gene-NDY25_08205;Dbxref=NCBI_GP:UUF03925.1;Name=UUF03925.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449381.1;locus_tag=NDY25_08205;product=N-acetylmuramoyl-L-alanine amidase;protein_id=UUF03925.1;transl_table=11 CP098604.1 Genbank gene 1848591 1850003 . + . ID=gene-NDY25_08210;Name=NDY25_08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08210 CP098604.1 Protein Homology CDS 1848591 1850003 . + 0 ID=cds-UUF03926.1;Parent=gene-NDY25_08210;Dbxref=NCBI_GP:UUF03926.1;Name=UUF03926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091256.1;locus_tag=NDY25_08210;product=SH3 domain-containing protein;protein_id=UUF03926.1;transl_table=11 CP098604.1 Genbank gene 1850000 1851097 . + . ID=gene-NDY25_08215;Name=NDY25_08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08215 CP098604.1 Protein Homology CDS 1850000 1851097 . + 0 ID=cds-UUF03927.1;Parent=gene-NDY25_08215;Dbxref=NCBI_GP:UUF03927.1;Name=UUF03927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005987897.1;locus_tag=NDY25_08215;product=dipeptide epimerase;protein_id=UUF03927.1;transl_table=11 CP098604.1 Genbank gene 1851659 1852435 . + . ID=gene-NDY25_08220;Name=NDY25_08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08220 CP098604.1 Protein Homology CDS 1851659 1852435 . + 0 ID=cds-UUF03928.1;Parent=gene-NDY25_08220;Dbxref=NCBI_GP:UUF03928.1;Name=UUF03928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450816.1;locus_tag=NDY25_08220;product=hypothetical protein;protein_id=UUF03928.1;transl_table=11 CP098604.1 Genbank gene 1852432 1853739 . + . ID=gene-NDY25_08225;Name=NDY25_08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08225 CP098604.1 Protein Homology CDS 1852432 1853739 . + 0 ID=cds-UUF03929.1;Parent=gene-NDY25_08225;Dbxref=NCBI_GP:UUF03929.1;Name=UUF03929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159375.1;locus_tag=NDY25_08225;product=APC family permease;protein_id=UUF03929.1;transl_table=11 CP098604.1 Genbank gene 1853827 1854324 . + . ID=gene-NDY25_08230;Name=NDY25_08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08230 CP098604.1 Protein Homology CDS 1853827 1854324 . + 0 ID=cds-UUF03930.1;Parent=gene-NDY25_08230;Dbxref=NCBI_GP:UUF03930.1;Name=UUF03930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159376.1;locus_tag=NDY25_08230;product=hypothetical protein;protein_id=UUF03930.1;transl_table=11 CP098604.1 Genbank gene 1854506 1854838 . + . ID=gene-NDY25_08235;Name=NDY25_08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08235 CP098604.1 Protein Homology CDS 1854506 1854838 . + 0 ID=cds-UUF03931.1;Parent=gene-NDY25_08235;Dbxref=NCBI_GP:UUF03931.1;Name=UUF03931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452391.1;locus_tag=NDY25_08235;product=hypothetical protein;protein_id=UUF03931.1;transl_table=11 CP098604.1 Genbank gene 1854892 1855329 . - . ID=gene-NDY25_08240;Name=NDY25_08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08240 CP098604.1 Protein Homology CDS 1854892 1855329 . - 0 ID=cds-UUF03932.1;Parent=gene-NDY25_08240;Dbxref=NCBI_GP:UUF03932.1;Name=UUF03932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452390.1;locus_tag=NDY25_08240;product=hypothetical protein;protein_id=UUF03932.1;transl_table=11 CP098604.1 Genbank gene 1855501 1856679 . + . ID=gene-NDY25_08245;Name=NDY25_08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08245 CP098604.1 Protein Homology CDS 1855501 1856679 . + 0 ID=cds-UUF03933.1;Parent=gene-NDY25_08245;Dbxref=NCBI_GP:UUF03933.1;Name=UUF03933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484599.1;locus_tag=NDY25_08245;product=PQQ-dependent sugar dehydrogenase;protein_id=UUF03933.1;transl_table=11 CP098604.1 Genbank gene 1856945 1857708 . + . ID=gene-NDY25_08250;Name=NDY25_08250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08250 CP098604.1 Protein Homology CDS 1856945 1857260 . + 0 ID=cds-UUF04584.1;Parent=gene-NDY25_08250;Dbxref=NCBI_GP:UUF04584.1;Name=UUF04584.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_08250;product=IS5 family transposase;protein_id=UUF04584.1;transl_table=11 CP098604.1 Protein Homology CDS 1857260 1857708 . + 2 ID=cds-UUF04584.1;Parent=gene-NDY25_08250;Dbxref=NCBI_GP:UUF04584.1;Name=UUF04584.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_08250;product=IS5 family transposase;protein_id=UUF04584.1;transl_table=11 CP098604.1 Genbank gene 1857779 1859950 . - . ID=gene-NDY25_08255;Name=NDY25_08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08255 CP098604.1 Protein Homology CDS 1857779 1859950 . - 0 ID=cds-UUF03934.1;Parent=gene-NDY25_08255;Dbxref=NCBI_GP:UUF03934.1;Name=UUF03934.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452388.1;locus_tag=NDY25_08255;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=UUF03934.1;transl_table=11 CP098604.1 Genbank gene 1860208 1860585 . - . ID=gene-NDY25_08260;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=NDY25_08260 CP098604.1 Protein Homology CDS 1860208 1860585 . - 0 ID=cds-UUF03935.1;Parent=gene-NDY25_08260;Dbxref=NCBI_GP:UUF03935.1;Name=UUF03935.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452387.1;locus_tag=NDY25_08260;product=dihydroneopterin aldolase;protein_id=UUF03935.1;transl_table=11 CP098604.1 Genbank gene 1860672 1861736 . - . ID=gene-NDY25_08265;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=NDY25_08265 CP098604.1 Protein Homology CDS 1860672 1861736 . - 0 ID=cds-UUF03936.1;Parent=gene-NDY25_08265;Dbxref=NCBI_GP:UUF03936.1;Name=UUF03936.1;Ontology_term=GO:0006400;gbkey=CDS;gene=tsaD;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038897.1;locus_tag=NDY25_08265;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=UUF03936.1;transl_table=11 CP098604.1 Genbank gene 1862031 1862246 . + . ID=gene-NDY25_08270;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=NDY25_08270 CP098604.1 Protein Homology CDS 1862031 1862246 . + 0 ID=cds-UUF03937.1;Parent=gene-NDY25_08270;Dbxref=NCBI_GP:UUF03937.1;Name=UUF03937.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsU;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011235429.1;locus_tag=NDY25_08270;product=30S ribosomal protein S21;protein_id=UUF03937.1;transl_table=11 CP098604.1 Genbank gene 1862382 1862828 . + . ID=gene-NDY25_08275;Name=NDY25_08275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08275 CP098604.1 Protein Homology CDS 1862382 1862828 . + 0 ID=cds-UUF03938.1;Parent=gene-NDY25_08275;Dbxref=NCBI_GP:UUF03938.1;Name=UUF03938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038898.1;locus_tag=NDY25_08275;product=GatB/YqeY domain-containing protein;protein_id=UUF03938.1;transl_table=11 CP098604.1 Genbank gene 1863039 1864025 . + . ID=gene-NDY25_08280;Name=NDY25_08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08280 CP098604.1 Protein Homology CDS 1863039 1864025 . + 0 ID=cds-UUF04585.1;Parent=gene-NDY25_08280;Dbxref=NCBI_GP:UUF04585.1;Name=UUF04585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038899.1;locus_tag=NDY25_08280;product=YihY/virulence factor BrkB family protein;protein_id=UUF04585.1;transl_table=11 CP098604.1 Genbank pseudogene 1864154 1865906 . + . ID=gene-NDY25_08285;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=pseudogene;locus_tag=NDY25_08285;pseudo=true CP098604.1 Protein Homology CDS 1864154 1865906 . + 0 ID=cds-NDY25_08285;Parent=gene-NDY25_08285;Note=frameshifted;Ontology_term=GO:0006269,GO:0003896;gbkey=CDS;gene=dnaG;go_function=DNA primase activity|0003896||IEA;go_process=DNA replication%2C synthesis of RNA primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506325.1;locus_tag=NDY25_08285;product=DNA primase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1866018 1867019 . + . ID=gene-NDY25_08290;Name=NDY25_08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08290 CP098604.1 Protein Homology CDS 1866018 1867019 . + 0 ID=cds-UUF03939.1;Parent=gene-NDY25_08290;Dbxref=NCBI_GP:UUF03939.1;Name=UUF03939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449729.1;locus_tag=NDY25_08290;product=bile acid:sodium symporter;protein_id=UUF03939.1;transl_table=11 CP098604.1 Genbank gene 1867288 1868868 . + . ID=gene-NDY25_08295;Name=NDY25_08295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08295 CP098604.1 Protein Homology CDS 1867288 1868868 . + 0 ID=cds-UUF03940.1;Parent=gene-NDY25_08295;Dbxref=NCBI_GP:UUF03940.1;Name=UUF03940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174430.1;locus_tag=NDY25_08295;product=thioredoxin family protein;protein_id=UUF03940.1;transl_table=11 CP098604.1 Genbank gene 1869072 1869968 . - . ID=gene-NDY25_08300;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=NDY25_08300 CP098604.1 Protein Homology CDS 1869072 1869968 . - 0 ID=cds-UUF03941.1;Parent=gene-NDY25_08300;Dbxref=NCBI_GP:UUF03941.1;Name=UUF03941.1;Ontology_term=GO:0006783,GO:0008495;gbkey=CDS;gene=cyoE;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme biosynthetic process|0006783||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966545.1;locus_tag=NDY25_08300;product=heme o synthase;protein_id=UUF03941.1;transl_table=11 CP098604.1 Genbank gene 1869971 1871134 . - . ID=gene-NDY25_08305;Name=NDY25_08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08305 CP098604.1 Protein Homology CDS 1869971 1871134 . - 0 ID=cds-UUF03942.1;Parent=gene-NDY25_08305;Dbxref=NCBI_GP:UUF03942.1;Name=UUF03942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238044.1;locus_tag=NDY25_08305;product=COX15/CtaA family protein;protein_id=UUF03942.1;transl_table=11 CP098604.1 Genbank gene 1871145 1871720 . - . ID=gene-NDY25_08310;Name=NDY25_08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08310 CP098604.1 Protein Homology CDS 1871145 1871720 . - 0 ID=cds-UUF03943.1;Parent=gene-NDY25_08310;Dbxref=NCBI_GP:UUF03943.1;Name=UUF03943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303937.1;locus_tag=NDY25_08310;product=hypothetical protein;protein_id=UUF03943.1;transl_table=11 CP098604.1 Genbank gene 1871748 1872473 . - . ID=gene-NDY25_08315;Name=NDY25_08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08315 CP098604.1 Protein Homology CDS 1871748 1872473 . - 0 ID=cds-UUF03944.1;Parent=gene-NDY25_08315;Dbxref=NCBI_GP:UUF03944.1;Name=UUF03944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172044.1;locus_tag=NDY25_08315;product=SURF1 family protein;protein_id=UUF03944.1;transl_table=11 CP098604.1 Genbank gene 1872534 1872752 . + . ID=gene-NDY25_08320;Name=NDY25_08320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08320 CP098604.1 Protein Homology CDS 1872534 1872752 . + 0 ID=cds-UUF03945.1;Parent=gene-NDY25_08320;Dbxref=NCBI_GP:UUF03945.1;Name=UUF03945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157720.1;locus_tag=NDY25_08320;product=twin transmembrane helix small protein;protein_id=UUF03945.1;transl_table=11 CP098604.1 Genbank gene 1872829 1873704 . - . ID=gene-NDY25_08325;Name=NDY25_08325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08325 CP098604.1 Protein Homology CDS 1872829 1873704 . - 0 ID=cds-UUF03946.1;Parent=gene-NDY25_08325;Dbxref=NCBI_GP:UUF03946.1;Name=UUF03946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501710.1;locus_tag=NDY25_08325;product=cytochrome c oxidase subunit 3;protein_id=UUF03946.1;transl_table=11 CP098604.1 Genbank gene 1873744 1874340 . - . ID=gene-NDY25_08330;Name=NDY25_08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08330 CP098604.1 Protein Homology CDS 1873744 1874340 . - 0 ID=cds-UUF03947.1;Parent=gene-NDY25_08330;Dbxref=NCBI_GP:UUF03947.1;Name=UUF03947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163727.1;locus_tag=NDY25_08330;product=cytochrome c oxidase assembly protein;protein_id=UUF03947.1;transl_table=11 CP098604.1 Genbank gene 1874337 1874510 . - . ID=gene-NDY25_08335;Name=NDY25_08335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08335 CP098604.1 Protein Homology CDS 1874337 1874510 . - 0 ID=cds-UUF03948.1;Parent=gene-NDY25_08335;Dbxref=NCBI_GP:UUF03948.1;Name=UUF03948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484652.1;locus_tag=NDY25_08335;product=hypothetical protein;protein_id=UUF03948.1;transl_table=11 CP098604.1 Genbank gene 1874491 1876095 . - . ID=gene-NDY25_08340;Name=ctaD;gbkey=Gene;gene=ctaD;gene_biotype=protein_coding;locus_tag=NDY25_08340 CP098604.1 Protein Homology CDS 1874491 1876095 . - 0 ID=cds-UUF03949.1;Parent=gene-NDY25_08340;Dbxref=NCBI_GP:UUF03949.1;Name=UUF03949.1;Ontology_term=GO:0004129;gbkey=CDS;gene=ctaD;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501708.1;locus_tag=NDY25_08340;product=cytochrome c oxidase subunit I;protein_id=UUF03949.1;transl_table=11 CP098604.1 Genbank gene 1876135 1877088 . - . ID=gene-NDY25_08345;Name=coxB;gbkey=Gene;gene=coxB;gene_biotype=protein_coding;locus_tag=NDY25_08345 CP098604.1 Protein Homology CDS 1876135 1877088 . - 0 ID=cds-UUF03950.1;Parent=gene-NDY25_08345;Dbxref=NCBI_GP:UUF03950.1;Name=UUF03950.1;Ontology_term=GO:0004129;gbkey=CDS;gene=coxB;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157718.1;locus_tag=NDY25_08345;product=cytochrome c oxidase subunit II;protein_id=UUF03950.1;transl_table=11 CP098604.1 Genbank gene 1877105 1877581 . - . ID=gene-NDY25_08350;Name=NDY25_08350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08350 CP098604.1 Protein Homology CDS 1877105 1877581 . - 0 ID=cds-UUF04586.1;Parent=gene-NDY25_08350;Dbxref=NCBI_GP:UUF04586.1;Name=UUF04586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484655.1;locus_tag=NDY25_08350;product=DUF2244 domain-containing protein;protein_id=UUF04586.1;transl_table=11 CP098604.1 Genbank gene 1877860 1881060 . + . ID=gene-NDY25_08355;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=NDY25_08355 CP098604.1 Protein Homology CDS 1877860 1881060 . + 0 ID=cds-UUF03951.1;Parent=gene-NDY25_08355;Dbxref=NCBI_GP:UUF03951.1;Name=UUF03951.1;Ontology_term=GO:0006355,GO:0010133,GO:0003700,GO:0003842,GO:0004657,GO:0016620;gbkey=CDS;gene=putA;go_function=DNA-binding transcription factor activity|0003700||IEA,1-pyrroline-5-carboxylate dehydrogenase activity|0003842||IEA,proline dehydrogenase activity|0004657||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA,proline catabolic process to glutamate|0010133||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301724.1;locus_tag=NDY25_08355;product=bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA;protein_id=UUF03951.1;transl_table=11 CP098604.1 Genbank gene 1881605 1881719 . - . ID=gene-NDY25_08360;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=NDY25_08360 CP098604.1 cmsearch rRNA 1881605 1881719 . - . ID=rna-NDY25_08360;Parent=gene-NDY25_08360;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08360;product=5S ribosomal RNA CP098604.1 cmsearch exon 1881605 1881719 . - . ID=exon-NDY25_08360-1;Parent=rna-NDY25_08360;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08360;product=5S ribosomal RNA CP098604.1 Genbank gene 1881893 1884775 . - . ID=gene-NDY25_08365;Name=NDY25_08365;gbkey=Gene;gene_biotype=rRNA;locus_tag=NDY25_08365 CP098604.1 cmsearch rRNA 1881893 1884775 . - . ID=rna-NDY25_08365;Parent=gene-NDY25_08365;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08365;product=23S ribosomal RNA CP098604.1 cmsearch exon 1881893 1884775 . - . ID=exon-NDY25_08365-1;Parent=rna-NDY25_08365;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08365;product=23S ribosomal RNA CP098604.1 Genbank gene 1885003 1885079 . - . ID=gene-NDY25_08370;Name=NDY25_08370;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_08370 CP098604.1 tRNAscan-SE tRNA 1885003 1885079 . - . ID=rna-NDY25_08370;Parent=gene-NDY25_08370;anticodon=(pos:complement(1885043..1885045));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_08370;product=tRNA-Ile CP098604.1 tRNAscan-SE exon 1885003 1885079 . - . ID=exon-NDY25_08370-1;Parent=rna-NDY25_08370;anticodon=(pos:complement(1885043..1885045));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_08370;product=tRNA-Ile CP098604.1 Genbank gene 1885099 1885174 . - . ID=gene-NDY25_08375;Name=NDY25_08375;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_08375 CP098604.1 tRNAscan-SE tRNA 1885099 1885174 . - . ID=rna-NDY25_08375;Parent=gene-NDY25_08375;anticodon=(pos:complement(1885139..1885141));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_08375;product=tRNA-Ala CP098604.1 tRNAscan-SE exon 1885099 1885174 . - . ID=exon-NDY25_08375-1;Parent=rna-NDY25_08375;anticodon=(pos:complement(1885139..1885141));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_08375;product=tRNA-Ala CP098604.1 Genbank gene 1885267 1886813 . - . ID=gene-NDY25_08380;Name=NDY25_08380;gbkey=Gene;gene_biotype=rRNA;locus_tag=NDY25_08380 CP098604.1 cmsearch rRNA 1885267 1886813 . - . ID=rna-NDY25_08380;Parent=gene-NDY25_08380;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08380;product=16S ribosomal RNA CP098604.1 cmsearch exon 1885267 1886813 . - . ID=exon-NDY25_08380-1;Parent=rna-NDY25_08380;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08380;product=16S ribosomal RNA CP098604.1 Genbank gene 1887538 1888749 . - . ID=gene-NDY25_08385;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=NDY25_08385 CP098604.1 Protein Homology CDS 1887538 1888749 . - 0 ID=cds-UUF03952.1;Parent=gene-NDY25_08385;Dbxref=NCBI_GP:UUF03952.1;Name=UUF03952.1;Ontology_term=GO:0006437,GO:0004831,GO:0005737;gbkey=CDS;gene=tyrS;go_component=cytoplasm|0005737||IEA;go_function=tyrosine-tRNA ligase activity|0004831||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407458.1;locus_tag=NDY25_08385;product=tyrosine--tRNA ligase;protein_id=UUF03952.1;transl_table=11 CP098604.1 Genbank gene 1888920 1890338 . + . ID=gene-NDY25_08390;Name=NDY25_08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08390 CP098604.1 Protein Homology CDS 1888920 1890338 . + 0 ID=cds-UUF03953.1;Parent=gene-NDY25_08390;Dbxref=NCBI_GP:UUF03953.1;Name=UUF03953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115461.1;locus_tag=NDY25_08390;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=UUF03953.1;transl_table=11 CP098604.1 Genbank gene 1890413 1891555 . + . ID=gene-NDY25_08395;Name=NDY25_08395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08395 CP098604.1 Protein Homology CDS 1890413 1891555 . + 0 ID=cds-UUF03954.1;Parent=gene-NDY25_08395;Dbxref=NCBI_GP:UUF03954.1;Name=UUF03954.1;Ontology_term=GO:0006040,GO:0009254,GO:0005524,GO:0016773;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=amino sugar metabolic process|0006040||IEA,peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348848.1;locus_tag=NDY25_08395;product=anhydro-N-acetylmuramic acid kinase;protein_id=UUF03954.1;transl_table=11 CP098604.1 Genbank gene 1891816 1892043 . - . ID=gene-NDY25_08400;Name=NDY25_08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08400 CP098604.1 Protein Homology CDS 1891816 1892043 . - 0 ID=cds-UUF03955.1;Parent=gene-NDY25_08400;Dbxref=NCBI_GP:UUF03955.1;Name=UUF03955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489057.1;locus_tag=NDY25_08400;product=hypothetical protein;protein_id=UUF03955.1;transl_table=11 CP098604.1 Genbank gene 1892115 1893482 . - . ID=gene-NDY25_08405;Name=NDY25_08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08405 CP098604.1 Protein Homology CDS 1892115 1893482 . - 0 ID=cds-UUF03956.1;Parent=gene-NDY25_08405;Dbxref=NCBI_GP:UUF03956.1;Name=UUF03956.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010486871.1;locus_tag=NDY25_08405;product=MFS transporter;protein_id=UUF03956.1;transl_table=11 CP098604.1 Genbank gene 1893479 1894279 . - . ID=gene-NDY25_08410;Name=NDY25_08410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08410 CP098604.1 Protein Homology CDS 1893479 1894279 . - 0 ID=cds-UUF03957.1;Parent=gene-NDY25_08410;Dbxref=NCBI_GP:UUF03957.1;Name=UUF03957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930855.1;locus_tag=NDY25_08410;product=exodeoxyribonuclease III;protein_id=UUF03957.1;transl_table=11 CP098604.1 Genbank gene 1894400 1895059 . + . ID=gene-NDY25_08415;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=NDY25_08415 CP098604.1 Protein Homology CDS 1894400 1895059 . + 0 ID=cds-UUF03958.1;Parent=gene-NDY25_08415;Dbxref=NCBI_GP:UUF03958.1;Name=UUF03958.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374714.1;locus_tag=NDY25_08415;product=orotate phosphoribosyltransferase;protein_id=UUF03958.1;transl_table=11 CP098604.1 Genbank gene 1895082 1895762 . + . ID=gene-NDY25_08420;Name=NDY25_08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08420 CP098604.1 Protein Homology CDS 1895082 1895762 . + 0 ID=cds-UUF03959.1;Parent=gene-NDY25_08420;Dbxref=NCBI_GP:UUF03959.1;Name=UUF03959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173549.1;locus_tag=NDY25_08420;product=hypothetical protein;protein_id=UUF03959.1;transl_table=11 CP098604.1 Genbank gene 1895878 1896675 . + . ID=gene-NDY25_08425;Name=NDY25_08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08425 CP098604.1 Protein Homology CDS 1895878 1896675 . + 0 ID=cds-UUF03960.1;Parent=gene-NDY25_08425;Dbxref=NCBI_GP:UUF03960.1;Name=UUF03960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914407.1;locus_tag=NDY25_08425;product=AAA family ATPase;protein_id=UUF03960.1;transl_table=11 CP098604.1 Genbank gene 1896675 1897604 . + . ID=gene-NDY25_08430;Name=NDY25_08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08430 CP098604.1 Protein Homology CDS 1896675 1897604 . + 0 ID=cds-UUF03961.1;Parent=gene-NDY25_08430;Dbxref=NCBI_GP:UUF03961.1;Name=UUF03961.1;Ontology_term=GO:0000910,GO:0007059,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cytokinesis|0000910||IEA,chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163137.1;locus_tag=NDY25_08430;product=ParB/RepB/Spo0J family partition protein;protein_id=UUF03961.1;transl_table=11 CP098604.1 Genbank gene 1897639 1897947 . + . ID=gene-NDY25_08435;Name=NDY25_08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08435 CP098604.1 Protein Homology CDS 1897639 1897947 . + 0 ID=cds-UUF03962.1;Parent=gene-NDY25_08435;Dbxref=NCBI_GP:UUF03962.1;Name=UUF03962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901959.1;locus_tag=NDY25_08435;product=helix-hairpin-helix domain-containing protein;protein_id=UUF03962.1;transl_table=11 CP098604.1 Genbank gene 1898047 1899012 . + . ID=gene-NDY25_08440;Name=NDY25_08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08440 CP098604.1 Protein Homology CDS 1898047 1899012 . + 0 ID=cds-UUF03963.1;Parent=gene-NDY25_08440;Dbxref=NCBI_GP:UUF03963.1;Name=UUF03963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169566.1;locus_tag=NDY25_08440;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=UUF03963.1;transl_table=11 CP098604.1 Genbank gene 1899147 1899869 . + . ID=gene-NDY25_08445;Name=NDY25_08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08445 CP098604.1 Protein Homology CDS 1899147 1899869 . + 0 ID=cds-UUF03964.1;Parent=gene-NDY25_08445;Dbxref=NCBI_GP:UUF03964.1;Name=UUF03964.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038929.1;locus_tag=NDY25_08445;product=glycosyltransferase family 2 protein;protein_id=UUF03964.1;transl_table=11 CP098604.1 Genbank gene 1899869 1900210 . + . ID=gene-NDY25_08450;Name=NDY25_08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08450 CP098604.1 Protein Homology CDS 1899869 1900210 . + 0 ID=cds-UUF03965.1;Parent=gene-NDY25_08450;Dbxref=NCBI_GP:UUF03965.1;Name=UUF03965.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156759.1;locus_tag=NDY25_08450;product=lipid-A-disaccharide synthase N-terminal domain-containing protein;protein_id=UUF03965.1;transl_table=11 CP098604.1 Genbank gene 1900469 1901002 . + . ID=gene-NDY25_08455;Name=NDY25_08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08455 CP098604.1 Protein Homology CDS 1900469 1901002 . + 0 ID=cds-UUF03966.1;Parent=gene-NDY25_08455;Dbxref=NCBI_GP:UUF03966.1;Name=UUF03966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448979.1;locus_tag=NDY25_08455;product=hypothetical protein;protein_id=UUF03966.1;transl_table=11 CP098604.1 Genbank gene 1901104 1903452 . - . ID=gene-NDY25_08460;Name=NDY25_08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08460 CP098604.1 Protein Homology CDS 1901104 1903452 . - 0 ID=cds-UUF03967.1;Parent=gene-NDY25_08460;Dbxref=NCBI_GP:UUF03967.1;Name=UUF03967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161151.1;locus_tag=NDY25_08460;product=phosphomannomutase/phosphoglucomutase;protein_id=UUF03967.1;transl_table=11 CP098604.1 Genbank gene 1903465 1903932 . - . ID=gene-NDY25_08465;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=NDY25_08465 CP098604.1 Protein Homology CDS 1903465 1903932 . - 0 ID=cds-UUF03968.1;Parent=gene-NDY25_08465;Dbxref=NCBI_GP:UUF03968.1;Name=UUF03968.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091285.1;locus_tag=NDY25_08465;product=dUTP diphosphatase;protein_id=UUF03968.1;transl_table=11 CP098604.1 Genbank gene 1903929 1905188 . - . ID=gene-NDY25_08470;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=NDY25_08470 CP098604.1 Protein Homology CDS 1903929 1905188 . - 0 ID=cds-UUF03969.1;Parent=gene-NDY25_08470;Dbxref=NCBI_GP:UUF03969.1;Name=UUF03969.1;Ontology_term=GO:0015937,GO:0015939,GO:0004632,GO:0004633;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate metabolic process|0015939||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964144.1;locus_tag=NDY25_08470;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=UUF03969.1;transl_table=11 CP098604.1 Genbank gene 1905249 1905962 . + . ID=gene-NDY25_08475;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=NDY25_08475 CP098604.1 Protein Homology CDS 1905249 1905962 . + 0 ID=cds-UUF04587.1;Parent=gene-NDY25_08475;Dbxref=NCBI_GP:UUF04587.1;Name=UUF04587.1;Ontology_term=GO:0006281,GO:0003677;gbkey=CDS;gene=radC;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300786.1;locus_tag=NDY25_08475;product=DNA repair protein RadC;protein_id=UUF04587.1;transl_table=11 CP098604.1 Genbank gene 1906049 1907737 . + . ID=gene-NDY25_08480;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=NDY25_08480 CP098604.1 Protein Homology CDS 1906049 1907737 . + 0 ID=cds-UUF03970.1;Parent=gene-NDY25_08480;Dbxref=NCBI_GP:UUF03970.1;Name=UUF03970.1;Ontology_term=GO:0006420,GO:0004814,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300787.1;locus_tag=NDY25_08480;product=arginine--tRNA ligase;protein_id=UUF03970.1;transl_table=11 CP098604.1 Genbank gene 1907783 1908682 . + . ID=gene-NDY25_08485;Name=NDY25_08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08485 CP098604.1 Protein Homology CDS 1907783 1908682 . + 0 ID=cds-UUF03971.1;Parent=gene-NDY25_08485;Dbxref=NCBI_GP:UUF03971.1;Name=UUF03971.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091287.1;locus_tag=NDY25_08485;product=SPOR domain-containing protein;protein_id=UUF03971.1;transl_table=11 CP098604.1 Genbank gene 1908845 1909603 . + . ID=gene-NDY25_08490;Name=NDY25_08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08490 CP098604.1 Protein Homology CDS 1908845 1909603 . + 0 ID=cds-UUF03972.1;Parent=gene-NDY25_08490;Dbxref=NCBI_GP:UUF03972.1;Name=UUF03972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995556.1;locus_tag=NDY25_08490;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=UUF03972.1;transl_table=11 CP098604.1 Genbank pseudogene 1909916 1912116 . + . ID=gene-NDY25_08495;Name=NDY25_08495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_08495;pseudo=true CP098604.1 Protein Homology CDS 1909916 1912116 . + 0 ID=cds-NDY25_08495;Parent=gene-NDY25_08495;Note=frameshifted;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012801.2;locus_tag=NDY25_08495;product=TonB-dependent receptor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1912106 1912717 . + . ID=gene-NDY25_08500;Name=NDY25_08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08500 CP098604.1 Protein Homology CDS 1912106 1912717 . + 0 ID=cds-UUF03973.1;Parent=gene-NDY25_08500;Dbxref=NCBI_GP:UUF03973.1;Name=UUF03973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014037493.1;locus_tag=NDY25_08500;product=alkyl hydroperoxide reductase;protein_id=UUF03973.1;transl_table=11 CP098604.1 Genbank pseudogene 1912808 1913881 . - . ID=gene-NDY25_08505;Name=NDY25_08505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_08505;pseudo=true CP098604.1 Protein Homology CDS 1912808 1913881 . - 0 ID=cds-NDY25_08505;Parent=gene-NDY25_08505;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504972.1;locus_tag=NDY25_08505;product=acyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1914158 1915495 . - . ID=gene-NDY25_08510;Name=NDY25_08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08510 CP098604.1 Protein Homology CDS 1914158 1915495 . - 0 ID=cds-UUF03974.1;Parent=gene-NDY25_08510;Dbxref=NCBI_GP:UUF03974.1;Name=UUF03974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922461.1;locus_tag=NDY25_08510;product=glycosyltransferase;protein_id=UUF03974.1;transl_table=11 CP098604.1 Genbank gene 1915488 1919471 . - . ID=gene-NDY25_08515;Name=NDY25_08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08515 CP098604.1 Protein Homology CDS 1915488 1919471 . - 0 ID=cds-UUF03975.1;Parent=gene-NDY25_08515;Dbxref=NCBI_GP:UUF03975.1;Name=UUF03975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238053.1;locus_tag=NDY25_08515;product=non-ribosomal peptide synthetase;protein_id=UUF03975.1;transl_table=11 CP098604.1 Genbank gene 1920427 1922313 . - . ID=gene-NDY25_08520;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=NDY25_08520 CP098604.1 Protein Homology CDS 1920427 1922313 . - 0 ID=cds-UUF03976.1;Parent=gene-NDY25_08520;Dbxref=NCBI_GP:UUF03976.1;Name=UUF03976.1;Ontology_term=GO:0008295,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038943.1;locus_tag=NDY25_08520;product=arginine decarboxylase;protein_id=UUF03976.1;transl_table=11 CP098604.1 Genbank gene 1922548 1923405 . + . ID=gene-NDY25_08525;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=NDY25_08525 CP098604.1 Protein Homology CDS 1922548 1923405 . + 0 ID=cds-UUF03977.1;Parent=gene-NDY25_08525;Dbxref=NCBI_GP:UUF03977.1;Name=UUF03977.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305070.1;locus_tag=NDY25_08525;product=polyamine aminopropyltransferase;protein_id=UUF03977.1;transl_table=11 CP098604.1 Genbank gene 1923637 1924248 . - . ID=gene-NDY25_08530;Name=NDY25_08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08530 CP098604.1 Protein Homology CDS 1923637 1924248 . - 0 ID=cds-UUF03978.1;Parent=gene-NDY25_08530;Dbxref=NCBI_GP:UUF03978.1;Name=UUF03978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305069.1;locus_tag=NDY25_08530;product=PH domain-containing protein;protein_id=UUF03978.1;transl_table=11 CP098604.1 Genbank gene 1924446 1925255 . - . ID=gene-NDY25_08535;Name=NDY25_08535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08535 CP098604.1 Protein Homology CDS 1924446 1925255 . - 0 ID=cds-UUF03979.1;Parent=gene-NDY25_08535;Dbxref=NCBI_GP:UUF03979.1;Name=UUF03979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914384.1;locus_tag=NDY25_08535;product=porin family protein;protein_id=UUF03979.1;transl_table=11 CP098604.1 Genbank gene 1925819 1926502 . + . ID=gene-NDY25_08540;Name=NDY25_08540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08540 CP098604.1 Protein Homology CDS 1925819 1926502 . + 0 ID=cds-UUF03980.1;Parent=gene-NDY25_08540;Dbxref=NCBI_GP:UUF03980.1;Name=UUF03980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448994.1;locus_tag=NDY25_08540;product=kinase;protein_id=UUF03980.1;transl_table=11 CP098604.1 Genbank gene 1926844 1928817 . - . ID=gene-NDY25_08545;Name=NDY25_08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08545 CP098604.1 Protein Homology CDS 1926844 1928817 . - 0 ID=cds-UUF03981.1;Parent=gene-NDY25_08545;Dbxref=NCBI_GP:UUF03981.1;Name=UUF03981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471473.1;locus_tag=NDY25_08545;product=beta-N-acetylglucosaminidase domain-containing protein;protein_id=UUF03981.1;transl_table=11 CP098604.1 Genbank gene 1929188 1929526 . - . ID=gene-NDY25_08550;Name=NDY25_08550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08550 CP098604.1 Protein Homology CDS 1929188 1929526 . - 0 ID=cds-UUF03982.1;Parent=gene-NDY25_08550;Dbxref=NCBI_GP:UUF03982.1;Name=UUF03982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003414756.1;locus_tag=NDY25_08550;product=P-II family nitrogen regulator;protein_id=UUF03982.1;transl_table=11 CP098604.1 Genbank gene 1929716 1929994 . + . ID=gene-NDY25_08555;Name=NDY25_08555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08555 CP098604.1 Protein Homology CDS 1929716 1929994 . + 0 ID=cds-UUF03983.1;Parent=gene-NDY25_08555;Dbxref=NCBI_GP:UUF03983.1;Name=UUF03983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156738.1;locus_tag=NDY25_08555;product=accessory factor UbiK family protein;protein_id=UUF03983.1;transl_table=11 CP098604.1 Genbank gene 1930011 1931531 . + . ID=gene-NDY25_08560;Name=NDY25_08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08560 CP098604.1 Protein Homology CDS 1930011 1931531 . + 0 ID=cds-UUF03984.1;Parent=gene-NDY25_08560;Dbxref=NCBI_GP:UUF03984.1;Name=UUF03984.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989245.1;locus_tag=NDY25_08560;product=YifB family Mg chelatase-like AAA ATPase;protein_id=UUF03984.1;transl_table=11 CP098604.1 Genbank gene 1931621 1932130 . + . ID=gene-NDY25_08565;Name=NDY25_08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08565 CP098604.1 Protein Homology CDS 1931621 1932130 . + 0 ID=cds-UUF03985.1;Parent=gene-NDY25_08565;Dbxref=NCBI_GP:UUF03985.1;Name=UUF03985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091298.1;locus_tag=NDY25_08565;product=lipocalin family protein;protein_id=UUF03985.1;transl_table=11 CP098604.1 Genbank gene 1932629 1932805 . - . ID=gene-NDY25_08570;Name=NDY25_08570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08570 CP098604.1 Protein Homology CDS 1932629 1932805 . - 0 ID=cds-UUF03986.1;Parent=gene-NDY25_08570;Dbxref=NCBI_GP:UUF03986.1;Name=UUF03986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374782.1;locus_tag=NDY25_08570;product=hypothetical protein;protein_id=UUF03986.1;transl_table=11 CP098604.1 Genbank gene 1933190 1934752 . + . ID=gene-NDY25_08575;Name=NDY25_08575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08575 CP098604.1 Protein Homology CDS 1933190 1934752 . + 0 ID=cds-UUF03987.1;Parent=gene-NDY25_08575;Dbxref=NCBI_GP:UUF03987.1;Name=UUF03987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449001.1;locus_tag=NDY25_08575;product=EAL domain-containing protein;protein_id=UUF03987.1;transl_table=11 CP098604.1 Genbank gene 1935004 1936128 . - . ID=gene-NDY25_08580;Name=NDY25_08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08580 CP098604.1 Protein Homology CDS 1935004 1936128 . - 0 ID=cds-UUF03988.1;Parent=gene-NDY25_08580;Dbxref=NCBI_GP:UUF03988.1;Name=UUF03988.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348875.1;locus_tag=NDY25_08580;product=acyl-CoA desaturase;protein_id=UUF03988.1;transl_table=11 CP098604.1 Genbank gene 1936138 1937214 . - . ID=gene-NDY25_08585;Name=NDY25_08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08585 CP098604.1 Protein Homology CDS 1936138 1937214 . - 0 ID=cds-UUF03989.1;Parent=gene-NDY25_08585;Dbxref=NCBI_GP:UUF03989.1;Name=UUF03989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974569.1;locus_tag=NDY25_08585;product=ferredoxin reductase;protein_id=UUF03989.1;transl_table=11 CP098604.1 Genbank gene 1937308 1937955 . + . ID=gene-NDY25_08590;Name=fabR;gbkey=Gene;gene=fabR;gene_biotype=protein_coding;locus_tag=NDY25_08590 CP098604.1 Protein Homology CDS 1937308 1937955 . + 0 ID=cds-UUF03990.1;Parent=gene-NDY25_08590;Dbxref=NCBI_GP:UUF03990.1;Name=UUF03990.1;Ontology_term=GO:0003677;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374793.1;locus_tag=NDY25_08590;product=HTH-type transcriptional repressor FabR;protein_id=UUF03990.1;transl_table=11 CP098604.1 Genbank gene 1938623 1939444 . + . ID=gene-NDY25_08595;Name=NDY25_08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08595 CP098604.1 Protein Homology CDS 1938623 1939444 . + 0 ID=cds-UUF03991.1;Parent=gene-NDY25_08595;Dbxref=NCBI_GP:UUF03991.1;Name=UUF03991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902664.1;locus_tag=NDY25_08595;product=hypothetical protein;protein_id=UUF03991.1;transl_table=11 CP098604.1 Genbank gene 1939576 1940442 . - . ID=gene-NDY25_08600;Name=NDY25_08600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08600 CP098604.1 Protein Homology CDS 1939576 1940442 . - 0 ID=cds-UUF03992.1;Parent=gene-NDY25_08600;Dbxref=NCBI_GP:UUF03992.1;Name=UUF03992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038960.1;locus_tag=NDY25_08600;product=alpha/beta fold hydrolase;protein_id=UUF03992.1;transl_table=11 CP098604.1 Genbank gene 1940442 1941527 . - . ID=gene-NDY25_08605;Name=NDY25_08605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08605 CP098604.1 Protein Homology CDS 1940442 1941527 . - 0 ID=cds-UUF03993.1;Parent=gene-NDY25_08605;Dbxref=NCBI_GP:UUF03993.1;Name=UUF03993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052641.1;locus_tag=NDY25_08605;product=DUF3182 family protein;protein_id=UUF03993.1;transl_table=11 CP098604.1 Genbank gene 1942178 1942459 . + . ID=gene-NDY25_08610;Name=NDY25_08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08610 CP098604.1 Protein Homology CDS 1942178 1942459 . + 0 ID=cds-UUF03994.1;Parent=gene-NDY25_08610;Dbxref=NCBI_GP:UUF03994.1;Name=UUF03994.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486531.1;locus_tag=NDY25_08610;product=hypothetical protein;protein_id=UUF03994.1;transl_table=11 CP098604.1 Genbank gene 1942503 1942769 . + . ID=gene-NDY25_08615;Name=NDY25_08615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08615 CP098604.1 Protein Homology CDS 1942503 1942769 . + 0 ID=cds-UUF03995.1;Parent=gene-NDY25_08615;Dbxref=NCBI_GP:UUF03995.1;Name=UUF03995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850754.1;locus_tag=NDY25_08615;product=hypothetical protein;protein_id=UUF03995.1;transl_table=11 CP098604.1 Genbank gene 1942869 1943462 . + . ID=gene-NDY25_08620;Name=NDY25_08620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08620 CP098604.1 Protein Homology CDS 1942869 1943462 . + 0 ID=cds-UUF03996.1;Parent=gene-NDY25_08620;Dbxref=NCBI_GP:UUF03996.1;Name=UUF03996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158206.1;locus_tag=NDY25_08620;product=DUF4142 domain-containing protein;protein_id=UUF03996.1;transl_table=11 CP098604.1 Genbank gene 1943652 1944539 . + . ID=gene-NDY25_08625;Name=NDY25_08625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08625 CP098604.1 Protein Homology CDS 1943652 1944539 . + 0 ID=cds-UUF03997.1;Parent=gene-NDY25_08625;Dbxref=NCBI_GP:UUF03997.1;Name=UUF03997.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159091.1;locus_tag=NDY25_08625;product=TIGR01777 family oxidoreductase;protein_id=UUF03997.1;transl_table=11 CP098604.1 Genbank gene 1944691 1945356 . + . ID=gene-NDY25_08630;Name=NDY25_08630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08630 CP098604.1 Protein Homology CDS 1944691 1945356 . + 0 ID=cds-UUF03998.1;Parent=gene-NDY25_08630;Dbxref=NCBI_GP:UUF03998.1;Name=UUF03998.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091309.1;locus_tag=NDY25_08630;product=response regulator transcription factor;protein_id=UUF03998.1;transl_table=11 CP098604.1 Genbank pseudogene 1945353 1946554 . + . ID=gene-NDY25_08635;Name=NDY25_08635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_08635;pseudo=true CP098604.1 Protein Homology CDS 1945353 1946554 . + 0 ID=cds-NDY25_08635;Parent=gene-NDY25_08635;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450947.1;locus_tag=NDY25_08635;product=ATP-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1946655 1946945 . + . ID=gene-NDY25_08640;Name=NDY25_08640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08640 CP098604.1 Protein Homology CDS 1946655 1946945 . + 0 ID=cds-UUF03999.1;Parent=gene-NDY25_08640;Dbxref=NCBI_GP:UUF03999.1;Name=UUF03999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932284.1;locus_tag=NDY25_08640;product=hypothetical protein;protein_id=UUF03999.1;transl_table=11 CP098604.1 Genbank gene 1947006 1947668 . + . ID=gene-NDY25_08645;Name=NDY25_08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08645 CP098604.1 Protein Homology CDS 1947006 1947668 . + 0 ID=cds-UUF04000.1;Parent=gene-NDY25_08645;Dbxref=NCBI_GP:UUF04000.1;Name=UUF04000.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038971.1;locus_tag=NDY25_08645;product=DUF3313 domain-containing protein;protein_id=UUF04000.1;transl_table=11 CP098604.1 Genbank gene 1947865 1948716 . - . ID=gene-NDY25_08650;Name=NDY25_08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08650 CP098604.1 Protein Homology CDS 1947865 1948716 . - 0 ID=cds-UUF04001.1;Parent=gene-NDY25_08650;Dbxref=NCBI_GP:UUF04001.1;Name=UUF04001.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052649.1;locus_tag=NDY25_08650;product=histidine biosynthesis protein HisIE;protein_id=UUF04001.1;transl_table=11 CP098604.1 Genbank gene 1948959 1950395 . + . ID=gene-NDY25_08655;Name=NDY25_08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08655 CP098604.1 Protein Homology CDS 1948959 1950395 . + 0 ID=cds-UUF04002.1;Parent=gene-NDY25_08655;Dbxref=NCBI_GP:UUF04002.1;Name=UUF04002.1;Ontology_term=GO:0006508,GO:0006950,GO:0004252,GO:0005515,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257055.1;locus_tag=NDY25_08655;product=Do family serine endopeptidase;protein_id=UUF04002.1;transl_table=11 CP098604.1 Genbank gene 1950511 1950873 . + . ID=gene-NDY25_08660;Name=NDY25_08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08660 CP098604.1 Protein Homology CDS 1950511 1950873 . + 0 ID=cds-UUF04003.1;Parent=gene-NDY25_08660;Dbxref=NCBI_GP:UUF04003.1;Name=UUF04003.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966985.1;locus_tag=NDY25_08660;product=hypothetical protein;protein_id=UUF04003.1;transl_table=11 CP098604.1 Genbank gene 1950877 1951365 . + . ID=gene-NDY25_08665;Name=NDY25_08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08665 CP098604.1 Protein Homology CDS 1950877 1951365 . + 0 ID=cds-UUF04004.1;Parent=gene-NDY25_08665;Dbxref=NCBI_GP:UUF04004.1;Name=UUF04004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115391.1;locus_tag=NDY25_08665;product=phage holin family protein;protein_id=UUF04004.1;transl_table=11 CP098604.1 Genbank gene 1951362 1951745 . + . ID=gene-NDY25_08670;Name=NDY25_08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08670 CP098604.1 Protein Homology CDS 1951362 1951745 . + 0 ID=cds-UUF04005.1;Parent=gene-NDY25_08670;Dbxref=NCBI_GP:UUF04005.1;Name=UUF04005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117789.1;locus_tag=NDY25_08670;product=hypothetical protein;protein_id=UUF04005.1;transl_table=11 CP098604.1 Genbank gene 1951918 1953024 . + . ID=gene-NDY25_08675;Name=NDY25_08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08675 CP098604.1 Protein Homology CDS 1951918 1953024 . + 0 ID=cds-UUF04006.1;Parent=gene-NDY25_08675;Dbxref=NCBI_GP:UUF04006.1;Name=UUF04006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809543.1;locus_tag=NDY25_08675;product=AI-2E family transporter;protein_id=UUF04006.1;transl_table=11 CP098604.1 Genbank gene 1953118 1953855 . + . ID=gene-NDY25_08680;Name=NDY25_08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08680 CP098604.1 Protein Homology CDS 1953118 1953855 . + 0 ID=cds-UUF04007.1;Parent=gene-NDY25_08680;Dbxref=NCBI_GP:UUF04007.1;Name=UUF04007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257383.1;locus_tag=NDY25_08680;product=HAD family hydrolase;protein_id=UUF04007.1;transl_table=11 CP098604.1 Genbank gene 1953898 1955268 . + . ID=gene-NDY25_08685;Name=NDY25_08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08685 CP098604.1 Protein Homology CDS 1953898 1955268 . + 0 ID=cds-UUF04008.1;Parent=gene-NDY25_08685;Dbxref=NCBI_GP:UUF04008.1;Name=UUF04008.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486560.1;locus_tag=NDY25_08685;product=leucyl aminopeptidase family protein;protein_id=UUF04008.1;transl_table=11 CP098604.1 Genbank gene 1955328 1955651 . + . ID=gene-NDY25_08690;Name=NDY25_08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08690 CP098604.1 Protein Homology CDS 1955328 1955651 . + 0 ID=cds-UUF04009.1;Parent=gene-NDY25_08690;Dbxref=NCBI_GP:UUF04009.1;Name=UUF04009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118446.1;locus_tag=NDY25_08690;product=hypothetical protein;protein_id=UUF04009.1;transl_table=11 CP098604.1 Genbank gene 1955885 1957027 . + . ID=gene-NDY25_08695;Name=NDY25_08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08695 CP098604.1 Protein Homology CDS 1955885 1957027 . + 0 ID=cds-UUF04010.1;Parent=gene-NDY25_08695;Dbxref=NCBI_GP:UUF04010.1;Name=UUF04010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038980.1;locus_tag=NDY25_08695;product=catalase family peroxidase;protein_id=UUF04010.1;transl_table=11 CP098604.1 Genbank gene 1956976 1957518 . + . ID=gene-NDY25_08700;Name=NDY25_08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08700 CP098604.1 Protein Homology CDS 1956976 1957518 . + 0 ID=cds-UUF04011.1;Parent=gene-NDY25_08700;Dbxref=NCBI_GP:UUF04011.1;Name=UUF04011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379264.1;locus_tag=NDY25_08700;product=cytochrome b;protein_id=UUF04011.1;transl_table=11 CP098604.1 Genbank gene 1957806 1958588 . - . ID=gene-NDY25_08705;Name=NDY25_08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08705 CP098604.1 Protein Homology CDS 1957806 1958588 . - 0 ID=cds-UUF04012.1;Parent=gene-NDY25_08705;Dbxref=NCBI_GP:UUF04012.1;Name=UUF04012.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850766.1;locus_tag=NDY25_08705;product=ThuA domain-containing protein;protein_id=UUF04012.1;transl_table=11 CP098604.1 Genbank gene 1958656 1958732 . - . ID=gene-NDY25_08710;Name=NDY25_08710;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_08710 CP098604.1 cmsearch ncRNA 1958656 1958732 . - . ID=rna-NDY25_08710;Parent=gene-NDY25_08710;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08710;product=sX9 sRNA CP098604.1 cmsearch exon 1958656 1958732 . - . ID=exon-NDY25_08710-1;Parent=rna-NDY25_08710;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08710;product=sX9 sRNA CP098604.1 Genbank gene 1958910 1959512 . - . ID=gene-NDY25_08715;Name=NDY25_08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08715 CP098604.1 Protein Homology CDS 1958910 1959512 . - 0 ID=cds-UUF04013.1;Parent=gene-NDY25_08715;Dbxref=NCBI_GP:UUF04013.1;Name=UUF04013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486570.1;locus_tag=NDY25_08715;product=response regulator transcription factor;protein_id=UUF04013.1;transl_table=11 CP098604.1 Genbank gene 1959604 1960791 . - . ID=gene-NDY25_08720;Name=NDY25_08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08720 CP098604.1 Protein Homology CDS 1959604 1960791 . - 0 ID=cds-UUF04014.1;Parent=gene-NDY25_08720;Dbxref=NCBI_GP:UUF04014.1;Name=UUF04014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448818.1;locus_tag=NDY25_08720;product=sensor histidine kinase;protein_id=UUF04014.1;transl_table=11 CP098604.1 Genbank gene 1961227 1962471 . + . ID=gene-NDY25_08725;Name=NDY25_08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08725 CP098604.1 Protein Homology CDS 1961227 1962471 . + 0 ID=cds-UUF04015.1;Parent=gene-NDY25_08725;Dbxref=NCBI_GP:UUF04015.1;Name=UUF04015.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348902.1;locus_tag=NDY25_08725;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF04015.1;transl_table=11 CP098604.1 Genbank gene 1962853 1963542 . + . ID=gene-NDY25_08730;Name=NDY25_08730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08730 CP098604.1 Protein Homology CDS 1962853 1963542 . + 0 ID=cds-UUF04016.1;Parent=gene-NDY25_08730;Dbxref=NCBI_GP:UUF04016.1;Name=UUF04016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091323.1;locus_tag=NDY25_08730;product=ABC transporter ATP-binding protein;protein_id=UUF04016.1;transl_table=11 CP098604.1 Genbank gene 1963657 1964637 . - . ID=gene-NDY25_08735;Name=NDY25_08735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08735 CP098604.1 Protein Homology CDS 1963657 1964637 . - 0 ID=cds-UUF04017.1;Parent=gene-NDY25_08735;Dbxref=NCBI_GP:UUF04017.1;Name=UUF04017.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_08735;product=IS5 family transposase;protein_id=UUF04017.1;transl_table=11 CP098604.1 Genbank gene 1964717 1965877 . + . ID=gene-NDY25_08740;Name=NDY25_08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08740 CP098604.1 Protein Homology CDS 1964717 1965877 . + 0 ID=cds-UUF04018.1;Parent=gene-NDY25_08740;Dbxref=NCBI_GP:UUF04018.1;Name=UUF04018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374852.1;locus_tag=NDY25_08740;product=ABC transporter permease;protein_id=UUF04018.1;transl_table=11 CP098604.1 Genbank gene 1965891 1967210 . + . ID=gene-NDY25_08745;Name=NDY25_08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08745 CP098604.1 Protein Homology CDS 1965891 1967210 . + 0 ID=cds-UUF04019.1;Parent=gene-NDY25_08745;Dbxref=NCBI_GP:UUF04019.1;Name=UUF04019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174380.1;locus_tag=NDY25_08745;product=ABC transporter permease;protein_id=UUF04019.1;transl_table=11 CP098604.1 Genbank gene 1967398 1968513 . + . ID=gene-NDY25_08750;Name=NDY25_08750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08750 CP098604.1 Protein Homology CDS 1967398 1968513 . + 0 ID=cds-UUF04020.1;Parent=gene-NDY25_08750;Dbxref=NCBI_GP:UUF04020.1;Name=UUF04020.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448813.1;locus_tag=NDY25_08750;product=alpha/beta fold hydrolase;protein_id=UUF04020.1;transl_table=11 CP098604.1 Genbank pseudogene 1968708 1969620 . - . ID=gene-NDY25_08755;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=pseudogene;locus_tag=NDY25_08755;pseudo=true CP098604.1 Protein Homology CDS 1968708 1969620 . - 0 ID=cds-NDY25_08755;Parent=gene-NDY25_08755;Note=frameshifted;Ontology_term=GO:0006810,GO:0005215,GO:0005887;gbkey=CDS;gene=rarD;go_component=integral component of plasma membrane|0005887||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902633.1;locus_tag=NDY25_08755;product=EamA family transporter RarD;pseudo=true;transl_table=11 CP098604.1 Genbank gene 1969617 1970558 . - . ID=gene-NDY25_08760;Name=yedA;gbkey=Gene;gene=yedA;gene_biotype=protein_coding;locus_tag=NDY25_08760 CP098604.1 Protein Homology CDS 1969617 1970558 . - 0 ID=cds-UUF04021.1;Parent=gene-NDY25_08760;Dbxref=NCBI_GP:UUF04021.1;Name=UUF04021.1;Ontology_term=GO:0016021;gbkey=CDS;gene=yedA;go_component=integral component of membrane|0016021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158230.1;locus_tag=NDY25_08760;product=drug/metabolite exporter YedA;protein_id=UUF04021.1;transl_table=11 CP098604.1 Genbank gene 1970603 1971073 . + . ID=gene-NDY25_08765;Name=NDY25_08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08765 CP098604.1 Protein Homology CDS 1970603 1971073 . + 0 ID=cds-UUF04022.1;Parent=gene-NDY25_08765;Dbxref=NCBI_GP:UUF04022.1;Name=UUF04022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966947.1;locus_tag=NDY25_08765;product=hypothetical protein;protein_id=UUF04022.1;transl_table=11 CP098604.1 Genbank gene 1971133 1971209 . + . ID=gene-NDY25_08770;Name=NDY25_08770;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_08770 CP098604.1 cmsearch ncRNA 1971133 1971209 . + . ID=rna-NDY25_08770;Parent=gene-NDY25_08770;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08770;product=sX9 sRNA CP098604.1 cmsearch exon 1971133 1971209 . + . ID=exon-NDY25_08770-1;Parent=rna-NDY25_08770;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_08770;product=sX9 sRNA CP098604.1 Genbank gene 1971322 1973016 . - . ID=gene-NDY25_08775;Name=NDY25_08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08775 CP098604.1 Protein Homology CDS 1971322 1973016 . - 0 ID=cds-UUF04588.1;Parent=gene-NDY25_08775;Dbxref=NCBI_GP:UUF04588.1;Name=UUF04588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158488.1;locus_tag=NDY25_08775;product=M28 family metallopeptidase;protein_id=UUF04588.1;transl_table=11 CP098604.1 Genbank gene 1973799 1974785 . - . ID=gene-NDY25_08780;Name=NDY25_08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08780 CP098604.1 Protein Homology CDS 1973799 1974785 . - 0 ID=cds-UUF04023.1;Parent=gene-NDY25_08780;Dbxref=NCBI_GP:UUF04023.1;Name=UUF04023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407412.1;locus_tag=NDY25_08780;product=MBL fold metallo-hydrolase;protein_id=UUF04023.1;transl_table=11 CP098604.1 Genbank gene 1974944 1976233 . - . ID=gene-NDY25_08785;Name=NDY25_08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08785 CP098604.1 Protein Homology CDS 1974944 1976233 . - 0 ID=cds-UUF04024.1;Parent=gene-NDY25_08785;Dbxref=NCBI_GP:UUF04024.1;Name=UUF04024.1;Ontology_term=GO:0006436,GO:0004830;gbkey=CDS;go_function=tryptophan-tRNA ligase activity|0004830||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966942.1;locus_tag=NDY25_08785;product=tryptophan--tRNA ligase;protein_id=UUF04024.1;transl_table=11 CP098604.1 Genbank gene 1976407 1976616 . - . ID=gene-NDY25_08790;Name=NDY25_08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08790 CP098604.1 Protein Homology CDS 1976407 1976616 . - 0 ID=cds-UUF04025.1;Parent=gene-NDY25_08790;Dbxref=NCBI_GP:UUF04025.1;Name=UUF04025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486601.1;locus_tag=NDY25_08790;product=CsbD family protein;protein_id=UUF04025.1;transl_table=11 CP098604.1 Genbank gene 1976858 1976992 . - . ID=gene-NDY25_08795;Name=NDY25_08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08795 CP098604.1 Protein Homology CDS 1976858 1976992 . - 0 ID=cds-UUF04026.1;Parent=gene-NDY25_08795;Dbxref=NCBI_GP:UUF04026.1;Name=UUF04026.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904515.1;locus_tag=NDY25_08795;product=entericidin A/B family lipoprotein;protein_id=UUF04026.1;transl_table=11 CP098604.1 Genbank gene 1977071 1977223 . - . ID=gene-NDY25_08800;Name=NDY25_08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08800 CP098604.1 Protein Homology CDS 1977071 1977223 . - 0 ID=cds-UUF04027.1;Parent=gene-NDY25_08800;Dbxref=NCBI_GP:UUF04027.1;Name=UUF04027.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374875.1;locus_tag=NDY25_08800;product=entericidin A/B family lipoprotein;protein_id=UUF04027.1;transl_table=11 CP098604.1 Genbank gene 1977333 1978256 . - . ID=gene-NDY25_08805;Name=rocF;gbkey=Gene;gene=rocF;gene_biotype=protein_coding;locus_tag=NDY25_08805 CP098604.1 Protein Homology CDS 1977333 1978256 . - 0 ID=cds-UUF04028.1;Parent=gene-NDY25_08805;Dbxref=NCBI_GP:UUF04028.1;Name=UUF04028.1;Ontology_term=GO:0019547,GO:0004053;gbkey=CDS;gene=rocF;go_function=arginase activity|0004053||IEA;go_process=arginine catabolic process to ornithine|0019547||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989327.1;locus_tag=NDY25_08805;product=arginase;protein_id=UUF04028.1;transl_table=11 CP098604.1 Genbank gene 1978718 1979170 . + . ID=gene-NDY25_08810;Name=NDY25_08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08810 CP098604.1 Protein Homology CDS 1978718 1979170 . + 0 ID=cds-UUF04029.1;Parent=gene-NDY25_08810;Dbxref=NCBI_GP:UUF04029.1;Name=UUF04029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904517.1;locus_tag=NDY25_08810;product=roadblock/LC7 domain-containing protein;protein_id=UUF04029.1;transl_table=11 CP098604.1 Genbank gene 1979234 1979593 . + . ID=gene-NDY25_08815;Name=NDY25_08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08815 CP098604.1 Protein Homology CDS 1979234 1979593 . + 0 ID=cds-UUF04030.1;Parent=gene-NDY25_08815;Dbxref=NCBI_GP:UUF04030.1;Name=UUF04030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486613.1;locus_tag=NDY25_08815;product=roadblock/LC7 domain-containing protein;protein_id=UUF04030.1;transl_table=11 CP098604.1 Genbank gene 1979685 1980602 . + . ID=gene-NDY25_08820;Name=NDY25_08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08820 CP098604.1 Protein Homology CDS 1979685 1980602 . + 0 ID=cds-UUF04031.1;Parent=gene-NDY25_08820;Dbxref=NCBI_GP:UUF04031.1;Name=UUF04031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374883.1;locus_tag=NDY25_08820;product=hypothetical protein;protein_id=UUF04031.1;transl_table=11 CP098604.1 Genbank gene 1980599 1981141 . + . ID=gene-NDY25_08825;Name=NDY25_08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08825 CP098604.1 Protein Homology CDS 1980599 1981141 . + 0 ID=cds-UUF04032.1;Parent=gene-NDY25_08825;Dbxref=NCBI_GP:UUF04032.1;Name=UUF04032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159094.1;locus_tag=NDY25_08825;product=GTPase;protein_id=UUF04032.1;transl_table=11 CP098604.1 Genbank gene 1981732 1982415 . + . ID=gene-NDY25_08830;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=NDY25_08830 CP098604.1 Protein Homology CDS 1981732 1982415 . + 0 ID=cds-UUF04033.1;Parent=gene-NDY25_08830;Dbxref=NCBI_GP:UUF04033.1;Name=UUF04033.1;Ontology_term=GO:0015949,GO:0004798;gbkey=CDS;gene=tmk;go_function=thymidylate kinase activity|0004798||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486617.1;locus_tag=NDY25_08830;product=dTMP kinase;protein_id=UUF04033.1;transl_table=11 CP098604.1 Genbank gene 1982736 1982811 . - . ID=gene-NDY25_08835;Name=NDY25_08835;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_08835 CP098604.1 tRNAscan-SE tRNA 1982736 1982811 . - . ID=rna-NDY25_08835;Parent=gene-NDY25_08835;anticodon=(pos:complement(1982776..1982778));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_08835;product=tRNA-Thr CP098604.1 tRNAscan-SE exon 1982736 1982811 . - . ID=exon-NDY25_08835-1;Parent=rna-NDY25_08835;anticodon=(pos:complement(1982776..1982778));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_08835;product=tRNA-Thr CP098604.1 Genbank gene 1982845 1983747 . - . ID=gene-NDY25_08840;Name=NDY25_08840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08840 CP098604.1 Protein Homology CDS 1982845 1983747 . - 0 ID=cds-UUF04034.1;Parent=gene-NDY25_08840;Dbxref=NCBI_GP:UUF04034.1;Name=UUF04034.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039009.1;locus_tag=NDY25_08840;product=SPOR domain-containing protein;protein_id=UUF04034.1;transl_table=11 CP098604.1 Genbank gene 1983903 1984631 . - . ID=gene-NDY25_08845;Name=NDY25_08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08845 CP098604.1 Protein Homology CDS 1983903 1984631 . - 0 ID=cds-UUF04035.1;Parent=gene-NDY25_08845;Dbxref=NCBI_GP:UUF04035.1;Name=UUF04035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154906.1;locus_tag=NDY25_08845;product=type III pantothenate kinase;protein_id=UUF04035.1;transl_table=11 CP098604.1 Genbank gene 1984628 1985593 . - . ID=gene-NDY25_08850;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=NDY25_08850 CP098604.1 Protein Homology CDS 1984628 1985593 . - 0 ID=cds-UUF04036.1;Parent=gene-NDY25_08850;Dbxref=NCBI_GP:UUF04036.1;Name=UUF04036.1;Ontology_term=GO:0006355,GO:0006464,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin-[acetyl-CoA-carboxylase] ligase activity|0004077||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA,cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257360.1;locus_tag=NDY25_08850;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=UUF04036.1;transl_table=11 CP098604.1 Genbank gene 1985713 1985997 . + . ID=gene-NDY25_08855;Name=NDY25_08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08855 CP098604.1 Protein Homology CDS 1985713 1985997 . + 0 ID=cds-UUF04037.1;Parent=gene-NDY25_08855;Dbxref=NCBI_GP:UUF04037.1;Name=UUF04037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154908.1;locus_tag=NDY25_08855;product=hypothetical protein;protein_id=UUF04037.1;transl_table=11 CP098604.1 Genbank gene 1986006 1986761 . + . ID=gene-NDY25_08860;Name=NDY25_08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08860 CP098604.1 Protein Homology CDS 1986006 1986761 . + 0 ID=cds-UUF04038.1;Parent=gene-NDY25_08860;Dbxref=NCBI_GP:UUF04038.1;Name=UUF04038.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966931.1;locus_tag=NDY25_08860;product=zinc-dependent peptidase;protein_id=UUF04038.1;transl_table=11 CP098604.1 Genbank gene 1986919 1988106 . - . ID=gene-NDY25_08865;Name=NDY25_08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08865 CP098604.1 Protein Homology CDS 1986919 1988106 . - 0 ID=cds-UUF04039.1;Parent=gene-NDY25_08865;Dbxref=NCBI_GP:UUF04039.1;Name=UUF04039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304202.1;locus_tag=NDY25_08865;product=DUF1501 domain-containing protein;protein_id=UUF04039.1;transl_table=11 CP098604.1 Genbank gene 1988177 1989769 . - . ID=gene-NDY25_08870;Name=NDY25_08870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08870 CP098604.1 Protein Homology CDS 1988177 1989769 . - 0 ID=cds-UUF04040.1;Parent=gene-NDY25_08870;Dbxref=NCBI_GP:UUF04040.1;Name=UUF04040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005927696.1;locus_tag=NDY25_08870;product=DUF1800 domain-containing protein;protein_id=UUF04040.1;transl_table=11 CP098604.1 Genbank gene 1989893 1991263 . - . ID=gene-NDY25_08875;Name=NDY25_08875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08875 CP098604.1 Protein Homology CDS 1989893 1991263 . - 0 ID=cds-UUF04589.1;Parent=gene-NDY25_08875;Dbxref=NCBI_GP:UUF04589.1;Name=UUF04589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171995.1;locus_tag=NDY25_08875;product=ATP-binding protein;protein_id=UUF04589.1;transl_table=11 CP098604.1 Genbank gene 1991338 1992021 . - . ID=gene-NDY25_08880;Name=NDY25_08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08880 CP098604.1 Protein Homology CDS 1991338 1992021 . - 0 ID=cds-UUF04041.1;Parent=gene-NDY25_08880;Dbxref=NCBI_GP:UUF04041.1;Name=UUF04041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017917079.1;locus_tag=NDY25_08880;product=response regulator transcription factor;protein_id=UUF04041.1;transl_table=11 CP098604.1 Genbank gene 1992092 1992358 . - . ID=gene-NDY25_08885;Name=NDY25_08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08885 CP098604.1 Protein Homology CDS 1992092 1992358 . - 0 ID=cds-UUF04042.1;Parent=gene-NDY25_08885;Dbxref=NCBI_GP:UUF04042.1;Name=UUF04042.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012446315.1;locus_tag=NDY25_08885;product=hypothetical protein;protein_id=UUF04042.1;transl_table=11 CP098604.1 Genbank gene 1992733 1993737 . - . ID=gene-NDY25_08890;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=NDY25_08890 CP098604.1 Protein Homology CDS 1992733 1993737 . - 0 ID=cds-UUF04043.1;Parent=gene-NDY25_08890;Dbxref=NCBI_GP:UUF04043.1;Name=UUF04043.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916500.1;locus_tag=NDY25_08890;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=UUF04043.1;transl_table=11 CP098604.1 Genbank gene 1994304 1994528 . - . ID=gene-NDY25_08895;Name=NDY25_08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08895 CP098604.1 Protein Homology CDS 1994304 1994528 . - 0 ID=cds-UUF04044.1;Parent=gene-NDY25_08895;Dbxref=NCBI_GP:UUF04044.1;Name=UUF04044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154914.1;locus_tag=NDY25_08895;product=hypothetical protein;protein_id=UUF04044.1;transl_table=11 CP098604.1 Genbank gene 1995286 1995861 . - . ID=gene-NDY25_08900;Name=NDY25_08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08900 CP098604.1 Protein Homology CDS 1995286 1995861 . - 0 ID=cds-UUF04045.1;Parent=gene-NDY25_08900;Dbxref=NCBI_GP:UUF04045.1;Name=UUF04045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374921.1;locus_tag=NDY25_08900;product=ankyrin repeat domain-containing protein;protein_id=UUF04045.1;transl_table=11 CP098604.1 Genbank gene 1995921 1997426 . - . ID=gene-NDY25_08905;Name=katB;gbkey=Gene;gene=katB;gene_biotype=protein_coding;locus_tag=NDY25_08905 CP098604.1 Protein Homology CDS 1995921 1997426 . - 0 ID=cds-UUF04590.1;Parent=gene-NDY25_08905;Dbxref=NCBI_GP:UUF04590.1;Name=UUF04590.1;gbkey=CDS;gene=katB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902786.1;locus_tag=NDY25_08905;product=catalase KatB;protein_id=UUF04590.1;transl_table=11 CP098604.1 Genbank gene 1997697 1999829 . - . ID=gene-NDY25_08910;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=NDY25_08910 CP098604.1 Protein Homology CDS 1997697 1999829 . - 0 ID=cds-UUF04046.1;Parent=gene-NDY25_08910;Dbxref=NCBI_GP:UUF04046.1;Name=UUF04046.1;Ontology_term=GO:0006139,GO:0003677,GO:0003678,GO:0005524,GO:0016818;gbkey=CDS;gene=dinG;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505052.1;locus_tag=NDY25_08910;product=ATP-dependent DNA helicase DinG;protein_id=UUF04046.1;transl_table=11 CP098604.1 Genbank gene 1999947 2000174 . - . ID=gene-NDY25_08915;Name=NDY25_08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08915 CP098604.1 Protein Homology CDS 1999947 2000174 . - 0 ID=cds-UUF04047.1;Parent=gene-NDY25_08915;Dbxref=NCBI_GP:UUF04047.1;Name=UUF04047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452104.1;locus_tag=NDY25_08915;product=hypothetical protein;protein_id=UUF04047.1;transl_table=11 CP098604.1 Genbank gene 2000171 2000533 . - . ID=gene-NDY25_08920;Name=NDY25_08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08920 CP098604.1 Protein Homology CDS 2000171 2000533 . - 0 ID=cds-UUF04048.1;Parent=gene-NDY25_08920;Dbxref=NCBI_GP:UUF04048.1;Name=UUF04048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452105.1;locus_tag=NDY25_08920;product=hypothetical protein;protein_id=UUF04048.1;transl_table=11 CP098604.1 Genbank gene 2000535 2001386 . - . ID=gene-NDY25_08925;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=NDY25_08925 CP098604.1 Protein Homology CDS 2000535 2001386 . - 0 ID=cds-UUF04049.1;Parent=gene-NDY25_08925;Dbxref=NCBI_GP:UUF04049.1;Name=UUF04049.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257342.1;locus_tag=NDY25_08925;product=shikimate dehydrogenase;protein_id=UUF04049.1;transl_table=11 CP098604.1 Genbank gene 2001439 2002320 . + . ID=gene-NDY25_08930;Name=NDY25_08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08930 CP098604.1 Protein Homology CDS 2001439 2002320 . + 0 ID=cds-UUF04050.1;Parent=gene-NDY25_08930;Dbxref=NCBI_GP:UUF04050.1;Name=UUF04050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156261.1;locus_tag=NDY25_08930;product=PD40 domain-containing protein;protein_id=UUF04050.1;transl_table=11 CP098604.1 Genbank gene 2002955 2005474 . - . ID=gene-NDY25_08935;Name=NDY25_08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08935 CP098604.1 Protein Homology CDS 2002955 2005474 . - 0 ID=cds-UUF04051.1;Parent=gene-NDY25_08935;Dbxref=NCBI_GP:UUF04051.1;Name=UUF04051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916508.1;locus_tag=NDY25_08935;product=sulfite reductase flavoprotein subunit alpha;protein_id=UUF04051.1;transl_table=11 CP098604.1 Genbank gene 2005635 2006624 . - . ID=gene-NDY25_08940;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=NDY25_08940 CP098604.1 Protein Homology CDS 2005635 2006624 . - 0 ID=cds-UUF04052.1;Parent=gene-NDY25_08940;Dbxref=NCBI_GP:UUF04052.1;Name=UUF04052.1;Ontology_term=GO:0033014,GO:0003824,GO:0004655,GO:0046872;gbkey=CDS;gene=hemB;go_function=catalytic activity|0003824||IEA,porphobilinogen synthase activity|0004655||IEA,metal ion binding|0046872||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506206.1;locus_tag=NDY25_08940;product=porphobilinogen synthase;protein_id=UUF04052.1;transl_table=11 CP098604.1 Genbank gene 2006712 2006954 . - . ID=gene-NDY25_08945;Name=NDY25_08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08945 CP098604.1 Protein Homology CDS 2006712 2006954 . - 0 ID=cds-UUF04591.1;Parent=gene-NDY25_08945;Dbxref=NCBI_GP:UUF04591.1;Name=UUF04591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916515.1;locus_tag=NDY25_08945;product=hypothetical protein;protein_id=UUF04591.1;transl_table=11 CP098604.1 Genbank gene 2007156 2007608 . + . ID=gene-NDY25_08950;Name=NDY25_08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08950 CP098604.1 Protein Homology CDS 2007156 2007608 . + 0 ID=cds-UUF04053.1;Parent=gene-NDY25_08950;Dbxref=NCBI_GP:UUF04053.1;Name=UUF04053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379201.1;locus_tag=NDY25_08950;product=hypothetical protein;protein_id=UUF04053.1;transl_table=11 CP098604.1 Genbank gene 2008090 2008755 . + . ID=gene-NDY25_08955;Name=NDY25_08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08955 CP098604.1 Protein Homology CDS 2008090 2008755 . + 0 ID=cds-UUF04592.1;Parent=gene-NDY25_08955;Dbxref=NCBI_GP:UUF04592.1;Name=UUF04592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489854.1;locus_tag=NDY25_08955;product=hypothetical protein;protein_id=UUF04592.1;transl_table=11 CP098604.1 Genbank gene 2008816 2009964 . + . ID=gene-NDY25_08960;Name=NDY25_08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08960 CP098604.1 Protein Homology CDS 2008816 2009964 . + 0 ID=cds-UUF04054.1;Parent=gene-NDY25_08960;Dbxref=NCBI_GP:UUF04054.1;Name=UUF04054.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848926.1;locus_tag=NDY25_08960;product=type IV secretion system protein;protein_id=UUF04054.1;transl_table=11 CP098604.1 Genbank gene 2009983 2010690 . + . ID=gene-NDY25_08965;Name=NDY25_08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08965 CP098604.1 Protein Homology CDS 2009983 2010690 . + 0 ID=cds-UUF04055.1;Parent=gene-NDY25_08965;Dbxref=NCBI_GP:UUF04055.1;Name=UUF04055.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025197.2;locus_tag=NDY25_08965;product=DUF4189 domain-containing protein;protein_id=UUF04055.1;transl_table=11 CP098604.1 Genbank pseudogene 2010778 2011335 . + . ID=gene-NDY25_08970;Name=NDY25_08970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_08970;pseudo=true CP098604.1 Protein Homology CDS 2010778 2011335 . + 0 ID=cds-NDY25_08970;Parent=gene-NDY25_08970;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472001.1;locus_tag=NDY25_08970;product=type IV secretion system protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2011394 2011912 . + . ID=gene-NDY25_08975;Name=NDY25_08975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08975 CP098604.1 Protein Homology CDS 2011394 2011912 . + 0 ID=cds-UUF04056.1;Parent=gene-NDY25_08975;Dbxref=NCBI_GP:UUF04056.1;Name=UUF04056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438514.1;locus_tag=NDY25_08975;product=DUF4189 domain-containing protein;protein_id=UUF04056.1;transl_table=11 CP098604.1 Genbank gene 2012073 2012588 . + . ID=gene-NDY25_08980;Name=NDY25_08980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08980 CP098604.1 GeneMarkS-2+ CDS 2012073 2012588 . + 0 ID=cds-UUF04057.1;Parent=gene-NDY25_08980;Dbxref=NCBI_GP:UUF04057.1;Name=UUF04057.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_08980;product=hypothetical protein;protein_id=UUF04057.1;transl_table=11 CP098604.1 Genbank gene 2012631 2013860 . + . ID=gene-NDY25_08985;Name=NDY25_08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08985 CP098604.1 Protein Homology CDS 2012631 2013860 . + 0 ID=cds-UUF04058.1;Parent=gene-NDY25_08985;Dbxref=NCBI_GP:UUF04058.1;Name=UUF04058.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021508.2;locus_tag=NDY25_08985;product=DUF2235 domain-containing protein;protein_id=UUF04058.1;transl_table=11 CP098604.1 Genbank gene 2013827 2014933 . - . ID=gene-NDY25_08990;Name=NDY25_08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_08990 CP098604.1 Protein Homology CDS 2013827 2014933 . - 0 ID=cds-UUF04059.1;Parent=gene-NDY25_08990;Dbxref=NCBI_GP:UUF04059.1;Name=UUF04059.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: protein motif:HMM:NF033516.0;locus_tag=NDY25_08990;product=IS3 family transposase;protein_id=UUF04059.1;transl_table=11 CP098604.1 Genbank pseudogene 2015003 2015793 . + . ID=gene-NDY25_08995;Name=NDY25_08995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_08995;pseudo=true CP098604.1 Protein Homology CDS 2015003 2015793 . + 0 ID=cds-NDY25_08995;Parent=gene-NDY25_08995;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472001.1;locus_tag=NDY25_08995;product=type IV secretion system protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2015809 2016342 . + . ID=gene-NDY25_09000;Name=NDY25_09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09000 CP098604.1 Protein Homology CDS 2015809 2016342 . + 0 ID=cds-UUF04060.1;Parent=gene-NDY25_09000;Dbxref=NCBI_GP:UUF04060.1;Name=UUF04060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038240.1;locus_tag=NDY25_09000;product=DUF4189 domain-containing protein;protein_id=UUF04060.1;transl_table=11 CP098604.1 Genbank gene 2016500 2017015 . + . ID=gene-NDY25_09005;Name=NDY25_09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09005 CP098604.1 GeneMarkS-2+ CDS 2016500 2017015 . + 0 ID=cds-UUF04061.1;Parent=gene-NDY25_09005;Dbxref=NCBI_GP:UUF04061.1;Name=UUF04061.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09005;product=hypothetical protein;protein_id=UUF04061.1;transl_table=11 CP098604.1 Genbank gene 2017133 2018095 . - . ID=gene-NDY25_09010;Name=NDY25_09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09010 CP098604.1 Protein Homology CDS 2017133 2018095 . - 0 ID=cds-UUF04062.1;Parent=gene-NDY25_09010;Dbxref=NCBI_GP:UUF04062.1;Name=UUF04062.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_09010;product=IS1595 family transposase;protein_id=UUF04062.1;transl_table=11 CP098604.1 Genbank gene 2018247 2019611 . + . ID=gene-NDY25_09015;Name=NDY25_09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09015 CP098604.1 Protein Homology CDS 2018247 2019611 . + 0 ID=cds-UUF04063.1;Parent=gene-NDY25_09015;Dbxref=NCBI_GP:UUF04063.1;Name=UUF04063.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021508.2;locus_tag=NDY25_09015;product=DUF2235 domain-containing protein;protein_id=UUF04063.1;transl_table=11 CP098604.1 Genbank gene 2019734 2020276 . + . ID=gene-NDY25_09020;Name=NDY25_09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09020 CP098604.1 Protein Homology CDS 2019734 2020276 . + 0 ID=cds-UUF04064.1;Parent=gene-NDY25_09020;Dbxref=NCBI_GP:UUF04064.1;Name=UUF04064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269533.1;locus_tag=NDY25_09020;product=DUF4189 domain-containing protein;protein_id=UUF04064.1;transl_table=11 CP098604.1 Genbank gene 2020554 2022359 . - . ID=gene-NDY25_09025;Name=NDY25_09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09025 CP098604.1 Protein Homology CDS 2020554 2022359 . - 0 ID=cds-UUF04065.1;Parent=gene-NDY25_09025;Dbxref=NCBI_GP:UUF04065.1;Name=UUF04065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158571.1;locus_tag=NDY25_09025;product=DUF885 domain-containing protein;protein_id=UUF04065.1;transl_table=11 CP098604.1 Genbank gene 2022429 2022893 . - . ID=gene-NDY25_09030;Name=NDY25_09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09030 CP098604.1 Protein Homology CDS 2022429 2022893 . - 0 ID=cds-UUF04066.1;Parent=gene-NDY25_09030;Dbxref=NCBI_GP:UUF04066.1;Name=UUF04066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453130.1;locus_tag=NDY25_09030;product=cytochrome c oxidase assembly factor 1 family protein;protein_id=UUF04066.1;transl_table=11 CP098604.1 Genbank gene 2023136 2025364 . - . ID=gene-NDY25_09035;Name=NDY25_09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09035 CP098604.1 Protein Homology CDS 2023136 2025364 . - 0 ID=cds-UUF04067.1;Parent=gene-NDY25_09035;Dbxref=NCBI_GP:UUF04067.1;Name=UUF04067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944591.1;locus_tag=NDY25_09035;product=S9 family peptidase;protein_id=UUF04067.1;transl_table=11 CP098604.1 Genbank gene 2025694 2026383 . - . ID=gene-NDY25_09040;Name=NDY25_09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09040 CP098604.1 Protein Homology CDS 2025694 2026383 . - 0 ID=cds-UUF04068.1;Parent=gene-NDY25_09040;Dbxref=NCBI_GP:UUF04068.1;Name=UUF04068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804208.1;locus_tag=NDY25_09040;product=glutathione binding-like protein;protein_id=UUF04068.1;transl_table=11 CP098604.1 Genbank gene 2026635 2029649 . + . ID=gene-NDY25_09045;Name=NDY25_09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09045 CP098604.1 Protein Homology CDS 2026635 2029649 . + 0 ID=cds-UUF04069.1;Parent=gene-NDY25_09045;Dbxref=NCBI_GP:UUF04069.1;Name=UUF04069.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158727.1;locus_tag=NDY25_09045;product=TonB-dependent receptor;protein_id=UUF04069.1;transl_table=11 CP098604.1 Genbank gene 2029828 2030529 . + . ID=gene-NDY25_09050;Name=NDY25_09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09050 CP098604.1 Protein Homology CDS 2029828 2030529 . + 0 ID=cds-UUF04070.1;Parent=gene-NDY25_09050;Dbxref=NCBI_GP:UUF04070.1;Name=UUF04070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453126.1;locus_tag=NDY25_09050;product=SapC family protein;protein_id=UUF04070.1;transl_table=11 CP098604.1 Genbank gene 2030519 2031532 . + . ID=gene-NDY25_09055;Name=NDY25_09055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09055 CP098604.1 Protein Homology CDS 2030519 2031532 . + 0 ID=cds-UUF04071.1;Parent=gene-NDY25_09055;Dbxref=NCBI_GP:UUF04071.1;Name=UUF04071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156274.1;locus_tag=NDY25_09055;product=cupin-like domain-containing protein;protein_id=UUF04071.1;transl_table=11 CP098604.1 Genbank gene 2031545 2033110 . + . ID=gene-NDY25_09060;Name=NDY25_09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09060 CP098604.1 Protein Homology CDS 2031545 2033110 . + 0 ID=cds-UUF04072.1;Parent=gene-NDY25_09060;Dbxref=NCBI_GP:UUF04072.1;Name=UUF04072.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453124.1;locus_tag=NDY25_09060;product=tryptophan 7-halogenase;protein_id=UUF04072.1;transl_table=11 CP098604.1 Genbank pseudogene 2033251 2034274 . + . ID=gene-NDY25_09065;Name=NDY25_09065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_09065;pseudo=true CP098604.1 Protein Homology CDS 2033251 2034274 . + 0 ID=cds-NDY25_09065;Parent=gene-NDY25_09065;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117467.1;locus_tag=NDY25_09065;product=energy transducer TonB;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2034816 2036009 . - . ID=gene-NDY25_09070;Name=NDY25_09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09070 CP098604.1 Protein Homology CDS 2034816 2036009 . - 0 ID=cds-UUF04073.1;Parent=gene-NDY25_09070;Dbxref=NCBI_GP:UUF04073.1;Name=UUF04073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168416.1;locus_tag=NDY25_09070;product=ABC transporter permease;protein_id=UUF04073.1;transl_table=11 CP098604.1 Genbank gene 2036006 2036752 . - . ID=gene-NDY25_09075;Name=NDY25_09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09075 CP098604.1 Protein Homology CDS 2036006 2036752 . - 0 ID=cds-UUF04074.1;Parent=gene-NDY25_09075;Dbxref=NCBI_GP:UUF04074.1;Name=UUF04074.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039041.1;locus_tag=NDY25_09075;product=ATP-binding cassette domain-containing protein;protein_id=UUF04074.1;transl_table=11 CP098604.1 Genbank gene 2036784 2038376 . - . ID=gene-NDY25_09080;Name=NDY25_09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09080 CP098604.1 Protein Homology CDS 2036784 2038376 . - 0 ID=cds-UUF04075.1;Parent=gene-NDY25_09080;Dbxref=NCBI_GP:UUF04075.1;Name=UUF04075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849961.1;locus_tag=NDY25_09080;product=alpha/beta hydrolase;protein_id=UUF04075.1;transl_table=11 CP098604.1 Genbank gene 2038437 2038637 . - . ID=gene-NDY25_09085;Name=NDY25_09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09085 CP098604.1 Protein Homology CDS 2038437 2038637 . - 0 ID=cds-UUF04076.1;Parent=gene-NDY25_09085;Dbxref=NCBI_GP:UUF04076.1;Name=UUF04076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903655.1;locus_tag=NDY25_09085;product=helix-turn-helix transcriptional regulator;protein_id=UUF04076.1;transl_table=11 CP098604.1 Genbank gene 2038634 2039221 . - . ID=gene-NDY25_09090;Name=NDY25_09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09090 CP098604.1 Protein Homology CDS 2038634 2039221 . - 0 ID=cds-UUF04077.1;Parent=gene-NDY25_09090;Dbxref=NCBI_GP:UUF04077.1;Name=UUF04077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156281.1;locus_tag=NDY25_09090;product=hypothetical protein;protein_id=UUF04077.1;transl_table=11 CP098604.1 Genbank gene 2039552 2041123 . + . ID=gene-NDY25_09095;Name=NDY25_09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09095 CP098604.1 Protein Homology CDS 2039552 2041123 . + 0 ID=cds-UUF04078.1;Parent=gene-NDY25_09095;Dbxref=NCBI_GP:UUF04078.1;Name=UUF04078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849963.1;locus_tag=NDY25_09095;product=beta-xylosidase;protein_id=UUF04078.1;transl_table=11 CP098604.1 Genbank gene 2041187 2041459 . - . ID=gene-NDY25_09100;Name=NDY25_09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09100 CP098604.1 Protein Homology CDS 2041187 2041459 . - 0 ID=cds-UUF04079.1;Parent=gene-NDY25_09100;Dbxref=NCBI_GP:UUF04079.1;Name=UUF04079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487297.1;locus_tag=NDY25_09100;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=UUF04079.1;transl_table=11 CP098604.1 Genbank gene 2041525 2042526 . + . ID=gene-NDY25_09105;Name=dmeF;gbkey=Gene;gene=dmeF;gene_biotype=protein_coding;locus_tag=NDY25_09105 CP098604.1 Protein Homology CDS 2041525 2042526 . + 0 ID=cds-UUF04080.1;Parent=gene-NDY25_09105;Dbxref=NCBI_GP:UUF04080.1;Name=UUF04080.1;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016021;gbkey=CDS;gene=dmeF;go_component=integral component of membrane|0016021||IEA;go_function=cation transmembrane transporter activity|0008324||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452480.1;locus_tag=NDY25_09105;product=CDF family Co(II)/Ni(II) efflux transporter DmeF;protein_id=UUF04080.1;transl_table=11 CP098604.1 Genbank gene 2042766 2043593 . - . ID=gene-NDY25_09110;Name=NDY25_09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09110 CP098604.1 Protein Homology CDS 2042766 2043593 . - 0 ID=cds-UUF04081.1;Parent=gene-NDY25_09110;Dbxref=NCBI_GP:UUF04081.1;Name=UUF04081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091363.1;locus_tag=NDY25_09110;product=ferredoxin--NADP reductase;protein_id=UUF04081.1;transl_table=11 CP098604.1 Genbank gene 2043629 2044657 . + . ID=gene-NDY25_09115;Name=NDY25_09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09115 CP098604.1 Protein Homology CDS 2043629 2044657 . + 0 ID=cds-UUF04082.1;Parent=gene-NDY25_09115;Dbxref=NCBI_GP:UUF04082.1;Name=UUF04082.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450847.1;locus_tag=NDY25_09115;product=ABC transporter ATP-binding protein;protein_id=UUF04082.1;transl_table=11 CP098604.1 Genbank gene 2044654 2045457 . + . ID=gene-NDY25_09120;Name=NDY25_09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09120 CP098604.1 Protein Homology CDS 2044654 2045457 . + 0 ID=cds-UUF04083.1;Parent=gene-NDY25_09120;Dbxref=NCBI_GP:UUF04083.1;Name=UUF04083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903649.1;locus_tag=NDY25_09120;product=ABC transporter permease;protein_id=UUF04083.1;transl_table=11 CP098604.1 Genbank gene 2045459 2045797 . + . ID=gene-NDY25_09125;Name=NDY25_09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09125 CP098604.1 GeneMarkS-2+ CDS 2045459 2045797 . + 0 ID=cds-UUF04084.1;Parent=gene-NDY25_09125;Dbxref=NCBI_GP:UUF04084.1;Name=UUF04084.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09125;product=hypothetical protein;protein_id=UUF04084.1;transl_table=11 CP098604.1 Genbank gene 2045784 2046590 . + . ID=gene-NDY25_09130;Name=NDY25_09130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09130 CP098604.1 Protein Homology CDS 2045784 2046590 . + 0 ID=cds-UUF04085.1;Parent=gene-NDY25_09130;Dbxref=NCBI_GP:UUF04085.1;Name=UUF04085.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801519.1;locus_tag=NDY25_09130;product=IS5 family transposase;protein_id=UUF04085.1;transl_table=11 CP098604.1 Genbank gene 2046556 2046897 . + . ID=gene-NDY25_09135;Name=NDY25_09135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09135 CP098604.1 GeneMarkS-2+ CDS 2046556 2046897 . + 0 ID=cds-UUF04086.1;Parent=gene-NDY25_09135;Dbxref=NCBI_GP:UUF04086.1;Name=UUF04086.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09135;product=hypothetical protein;protein_id=UUF04086.1;transl_table=11 CP098604.1 Genbank gene 2047014 2047952 . + . ID=gene-NDY25_09140;Name=panE;gbkey=Gene;gene=panE;gene_biotype=protein_coding;locus_tag=NDY25_09140 CP098604.1 Protein Homology CDS 2047014 2047952 . + 0 ID=cds-UUF04087.1;Parent=gene-NDY25_09140;Dbxref=NCBI_GP:UUF04087.1;Name=UUF04087.1;Ontology_term=GO:0015940,GO:0008677;gbkey=CDS;gene=panE;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091365.1;locus_tag=NDY25_09140;product=2-dehydropantoate 2-reductase;protein_id=UUF04087.1;transl_table=11 CP098604.1 Genbank gene 2048037 2048195 . - . ID=gene-NDY25_09145;Name=NDY25_09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09145 CP098604.1 GeneMarkS-2+ CDS 2048037 2048195 . - 0 ID=cds-UUF04088.1;Parent=gene-NDY25_09145;Dbxref=NCBI_GP:UUF04088.1;Name=UUF04088.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09145;product=hypothetical protein;protein_id=UUF04088.1;transl_table=11 CP098604.1 Genbank gene 2048194 2048709 . + . ID=gene-NDY25_09150;Name=NDY25_09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09150 CP098604.1 Protein Homology CDS 2048194 2048709 . + 0 ID=cds-UUF04089.1;Parent=gene-NDY25_09150;Dbxref=NCBI_GP:UUF04089.1;Name=UUF04089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487308.1;locus_tag=NDY25_09150;product=hypothetical protein;protein_id=UUF04089.1;transl_table=11 CP098604.1 Genbank gene 2048776 2048851 . - . ID=gene-NDY25_09155;Name=NDY25_09155;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_09155 CP098604.1 cmsearch ncRNA 2048776 2048851 . - . ID=rna-NDY25_09155;Parent=gene-NDY25_09155;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_09155;product=sX9 sRNA CP098604.1 cmsearch exon 2048776 2048851 . - . ID=exon-NDY25_09155-1;Parent=rna-NDY25_09155;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_09155;product=sX9 sRNA CP098604.1 Genbank gene 2048917 2049615 . - . ID=gene-NDY25_09160;Name=NDY25_09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09160 CP098604.1 Protein Homology CDS 2048917 2049615 . - 0 ID=cds-UUF04090.1;Parent=gene-NDY25_09160;Dbxref=NCBI_GP:UUF04090.1;Name=UUF04090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452021.1;locus_tag=NDY25_09160;product=hypothetical protein;protein_id=UUF04090.1;transl_table=11 CP098604.1 Genbank gene 2049648 2050091 . - . ID=gene-NDY25_09165;Name=NDY25_09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09165 CP098604.1 Protein Homology CDS 2049648 2050091 . - 0 ID=cds-UUF04091.1;Parent=gene-NDY25_09165;Dbxref=NCBI_GP:UUF04091.1;Name=UUF04091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452020.1;locus_tag=NDY25_09165;product=acyl-CoA thioesterase;protein_id=UUF04091.1;transl_table=11 CP098604.1 Genbank gene 2050470 2050796 . - . ID=gene-NDY25_09170;Name=NDY25_09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09170 CP098604.1 Protein Homology CDS 2050470 2050796 . - 0 ID=cds-UUF04092.1;Parent=gene-NDY25_09170;Dbxref=NCBI_GP:UUF04092.1;Name=UUF04092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156291.1;locus_tag=NDY25_09170;product=thioredoxin family protein;protein_id=UUF04092.1;transl_table=11 CP098604.1 Genbank gene 2050768 2051262 . - . ID=gene-NDY25_09175;Name=NDY25_09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09175 CP098604.1 Protein Homology CDS 2050768 2051262 . - 0 ID=cds-UUF04093.1;Parent=gene-NDY25_09175;Dbxref=NCBI_GP:UUF04093.1;Name=UUF04093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989848.1;locus_tag=NDY25_09175;product=flavodoxin;protein_id=UUF04093.1;transl_table=11 CP098604.1 Genbank gene 2051487 2051957 . - . ID=gene-NDY25_09180;Name=NDY25_09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09180 CP098604.1 Protein Homology CDS 2051487 2051957 . - 0 ID=cds-UUF04094.1;Parent=gene-NDY25_09180;Dbxref=NCBI_GP:UUF04094.1;Name=UUF04094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369832.1;locus_tag=NDY25_09180;product=hypothetical protein;protein_id=UUF04094.1;transl_table=11 CP098604.1 Genbank gene 2051957 2052655 . - . ID=gene-NDY25_09185;Name=NDY25_09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09185 CP098604.1 Protein Homology CDS 2051957 2052655 . - 0 ID=cds-UUF04095.1;Parent=gene-NDY25_09185;Dbxref=NCBI_GP:UUF04095.1;Name=UUF04095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369829.1;locus_tag=NDY25_09185;product=DUF3800 domain-containing protein;protein_id=UUF04095.1;transl_table=11 CP098604.1 Genbank gene 2052697 2053740 . - . ID=gene-NDY25_09190;Name=NDY25_09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09190 CP098604.1 Protein Homology CDS 2052697 2053740 . - 0 ID=cds-UUF04096.1;Parent=gene-NDY25_09190;Dbxref=NCBI_GP:UUF04096.1;Name=UUF04096.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809721.1;locus_tag=NDY25_09190;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=UUF04096.1;transl_table=11 CP098604.1 Genbank gene 2053918 2056419 . - . ID=gene-NDY25_09195;Name=NDY25_09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09195 CP098604.1 Protein Homology CDS 2053918 2056419 . - 0 ID=cds-UUF04097.1;Parent=gene-NDY25_09195;Dbxref=NCBI_GP:UUF04097.1;Name=UUF04097.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501652.1;locus_tag=NDY25_09195;product=ribonucleoside-diphosphate reductase subunit alpha;protein_id=UUF04097.1;transl_table=11 CP098604.1 Genbank gene 2056861 2057901 . - . ID=gene-NDY25_09200;Name=NDY25_09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09200 CP098604.1 Protein Homology CDS 2056861 2057901 . - 0 ID=cds-UUF04098.1;Parent=gene-NDY25_09200;Dbxref=NCBI_GP:UUF04098.1;Name=UUF04098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487316.1;locus_tag=NDY25_09200;product=DUF475 domain-containing protein;protein_id=UUF04098.1;transl_table=11 CP098604.1 Genbank gene 2058008 2060716 . - . ID=gene-NDY25_09205;Name=NDY25_09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09205 CP098604.1 Protein Homology CDS 2058008 2060716 . - 0 ID=cds-UUF04099.1;Parent=gene-NDY25_09205;Dbxref=NCBI_GP:UUF04099.1;Name=UUF04099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506173.1;locus_tag=NDY25_09205;product=bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase;protein_id=UUF04099.1;transl_table=11 CP098604.1 Genbank gene 2060918 2061703 . + . ID=gene-NDY25_09210;Name=NDY25_09210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09210 CP098604.1 Protein Homology CDS 2060918 2061703 . + 0 ID=cds-UUF04100.1;Parent=gene-NDY25_09210;Dbxref=NCBI_GP:UUF04100.1;Name=UUF04100.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449435.1;locus_tag=NDY25_09210;product=DUF4198 domain-containing protein;protein_id=UUF04100.1;transl_table=11 CP098604.1 Genbank gene 2061845 2062756 . + . ID=gene-NDY25_09215;Name=NDY25_09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09215 CP098604.1 Protein Homology CDS 2061845 2062756 . + 0 ID=cds-UUF04101.1;Parent=gene-NDY25_09215;Dbxref=NCBI_GP:UUF04101.1;Name=UUF04101.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449436.1;locus_tag=NDY25_09215;product=EF-hand domain-containing protein;protein_id=UUF04101.1;transl_table=11 CP098604.1 Genbank gene 2062900 2065239 . + . ID=gene-NDY25_09220;Name=NDY25_09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09220 CP098604.1 Protein Homology CDS 2062900 2065239 . + 0 ID=cds-UUF04102.1;Parent=gene-NDY25_09220;Dbxref=NCBI_GP:UUF04102.1;Name=UUF04102.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904364.1;locus_tag=NDY25_09220;product=TonB-dependent hemoglobin/transferrin/lactoferrin family receptor;protein_id=UUF04102.1;transl_table=11 CP098604.1 Genbank gene 2065330 2066697 . - . ID=gene-NDY25_09225;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=NDY25_09225 CP098604.1 Protein Homology CDS 2065330 2066697 . - 0 ID=cds-UUF04103.1;Parent=gene-NDY25_09225;Dbxref=NCBI_GP:UUF04103.1;Name=UUF04103.1;Ontology_term=GO:0015693,GO:0015095;gbkey=CDS;gene=mgtE;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174334.1;locus_tag=NDY25_09225;product=magnesium transporter;protein_id=UUF04103.1;transl_table=11 CP098604.1 Genbank gene 2066999 2068810 . + . ID=gene-NDY25_09230;Name=NDY25_09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09230 CP098604.1 Protein Homology CDS 2066999 2068810 . + 0 ID=cds-UUF04104.1;Parent=gene-NDY25_09230;Dbxref=NCBI_GP:UUF04104.1;Name=UUF04104.1;Ontology_term=GO:0006812,GO:1902600,GO:0005451,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=monovalent cation:proton antiporter activity|0005451||IEA;go_process=cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369808.1;locus_tag=NDY25_09230;product=monovalent cation:proton antiporter-2 (CPA2) family protein;protein_id=UUF04104.1;transl_table=11 CP098604.1 Genbank gene 2068946 2070772 . - . ID=gene-NDY25_09235;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=NDY25_09235 CP098604.1 Protein Homology CDS 2068946 2070772 . - 0 ID=cds-UUF04105.1;Parent=gene-NDY25_09235;Dbxref=NCBI_GP:UUF04105.1;Name=UUF04105.1;Ontology_term=GO:0006098,GO:0004345;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381463.1;locus_tag=NDY25_09235;product=glucose-6-phosphate dehydrogenase;protein_id=UUF04105.1;transl_table=11 CP098604.1 Genbank gene 2070769 2072568 . - . ID=gene-NDY25_09240;Name=NDY25_09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09240 CP098604.1 Protein Homology CDS 2070769 2072568 . - 0 ID=cds-UUF04106.1;Parent=gene-NDY25_09240;Dbxref=NCBI_GP:UUF04106.1;Name=UUF04106.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158573.1;locus_tag=NDY25_09240;product=glycoside hydrolase family 15 protein;protein_id=UUF04106.1;transl_table=11 CP098604.1 Genbank gene 2073102 2076422 . - . ID=gene-NDY25_09245;Name=NDY25_09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09245 CP098604.1 Protein Homology CDS 2073102 2076422 . - 0 ID=cds-UUF04107.1;Parent=gene-NDY25_09245;Dbxref=NCBI_GP:UUF04107.1;Name=UUF04107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471441.1;locus_tag=NDY25_09245;product=ankyrin repeat domain-containing protein;protein_id=UUF04107.1;transl_table=11 CP098604.1 Genbank gene 2076415 2076675 . - . ID=gene-NDY25_09250;Name=NDY25_09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09250 CP098604.1 Protein Homology CDS 2076415 2076675 . - 0 ID=cds-UUF04108.1;Parent=gene-NDY25_09250;Dbxref=NCBI_GP:UUF04108.1;Name=UUF04108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156303.1;locus_tag=NDY25_09250;product=YcgL domain-containing protein;protein_id=UUF04108.1;transl_table=11 CP098604.1 Genbank gene 2076894 2078090 . + . ID=gene-NDY25_09255;Name=NDY25_09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09255 CP098604.1 Protein Homology CDS 2076894 2078090 . + 0 ID=cds-UUF04593.1;Parent=gene-NDY25_09255;Dbxref=NCBI_GP:UUF04593.1;Name=UUF04593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117713.1;locus_tag=NDY25_09255;product=beta-ketoacyl-[acyl-carrier-protein] synthase family protein;protein_id=UUF04593.1;transl_table=11 CP098604.1 Genbank gene 2078090 2078863 . + . ID=gene-NDY25_09260;Name=NDY25_09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09260 CP098604.1 Protein Homology CDS 2078090 2078863 . + 0 ID=cds-UUF04109.1;Parent=gene-NDY25_09260;Dbxref=NCBI_GP:UUF04109.1;Name=UUF04109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302406.1;locus_tag=NDY25_09260;product=beta-ketoacyl synthase chain length factor;protein_id=UUF04109.1;transl_table=11 CP098604.1 Genbank gene 2078860 2079681 . + . ID=gene-NDY25_09265;Name=NDY25_09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09265 CP098604.1 Protein Homology CDS 2078860 2079681 . + 0 ID=cds-UUF04110.1;Parent=gene-NDY25_09265;Dbxref=NCBI_GP:UUF04110.1;Name=UUF04110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369782.1;locus_tag=NDY25_09265;product=glycosyltransferase family 2 protein;protein_id=UUF04110.1;transl_table=11 CP098604.1 Genbank gene 2079678 2081300 . + . ID=gene-NDY25_09270;Name=NDY25_09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09270 CP098604.1 Protein Homology CDS 2079678 2081300 . + 0 ID=cds-UUF04111.1;Parent=gene-NDY25_09270;Dbxref=NCBI_GP:UUF04111.1;Name=UUF04111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972221.1;locus_tag=NDY25_09270;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=UUF04111.1;transl_table=11 CP098604.1 Genbank gene 2082027 2082764 . - . ID=gene-NDY25_09275;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=NDY25_09275 CP098604.1 Protein Homology CDS 2082027 2082764 . - 0 ID=cds-UUF04112.1;Parent=gene-NDY25_09275;Dbxref=NCBI_GP:UUF04112.1;Name=UUF04112.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fabG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506159.1;locus_tag=NDY25_09275;product=3-oxoacyl-ACP reductase FabG;protein_id=UUF04112.1;transl_table=11 CP098604.1 Genbank gene 2082935 2083375 . - . ID=gene-NDY25_09280;Name=NDY25_09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09280 CP098604.1 Protein Homology CDS 2082935 2083375 . - 0 ID=cds-UUF04113.1;Parent=gene-NDY25_09280;Dbxref=NCBI_GP:UUF04113.1;Name=UUF04113.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902838.1;locus_tag=NDY25_09280;product=phosphotransferase;protein_id=UUF04113.1;transl_table=11 CP098604.1 Genbank gene 2083362 2085728 . - . ID=gene-NDY25_09285;Name=NDY25_09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09285 CP098604.1 Protein Homology CDS 2083362 2085728 . - 0 ID=cds-UUF04114.1;Parent=gene-NDY25_09285;Dbxref=NCBI_GP:UUF04114.1;Name=UUF04114.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926484.1;locus_tag=NDY25_09285;product=MMPL family transporter;protein_id=UUF04114.1;transl_table=11 CP098604.1 Genbank gene 2085718 2085978 . - . ID=gene-NDY25_09290;Name=NDY25_09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09290 CP098604.1 GeneMarkS-2+ CDS 2085718 2085978 . - 0 ID=cds-UUF04115.1;Parent=gene-NDY25_09290;Dbxref=NCBI_GP:UUF04115.1;Name=UUF04115.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09290;product=hypothetical protein;protein_id=UUF04115.1;transl_table=11 CP098604.1 Genbank gene 2085975 2086595 . - . ID=gene-NDY25_09295;Name=NDY25_09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09295 CP098604.1 Protein Homology CDS 2085975 2086595 . - 0 ID=cds-UUF04594.1;Parent=gene-NDY25_09295;Dbxref=NCBI_GP:UUF04594.1;Name=UUF04594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994991.1;locus_tag=NDY25_09295;product=fatty acyl CoA synthetase;protein_id=UUF04594.1;transl_table=11 CP098604.1 Genbank gene 2086546 2087520 . - . ID=gene-NDY25_09300;Name=NDY25_09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09300 CP098604.1 Protein Homology CDS 2086546 2087520 . - 0 ID=cds-UUF04116.1;Parent=gene-NDY25_09300;Dbxref=NCBI_GP:UUF04116.1;Name=UUF04116.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260623.1;locus_tag=NDY25_09300;product=acyltransferase;protein_id=UUF04116.1;transl_table=11 CP098604.1 Genbank gene 2087517 2087744 . - . ID=gene-NDY25_09305;Name=NDY25_09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09305 CP098604.1 Protein Homology CDS 2087517 2087744 . - 0 ID=cds-UUF04117.1;Parent=gene-NDY25_09305;Dbxref=NCBI_GP:UUF04117.1;Name=UUF04117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914787.1;locus_tag=NDY25_09305;product=hypothetical protein;protein_id=UUF04117.1;transl_table=11 CP098604.1 Genbank gene 2087816 2088565 . - . ID=gene-NDY25_09310;Name=NDY25_09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09310 CP098604.1 Protein Homology CDS 2087816 2088565 . - 0 ID=cds-UUF04118.1;Parent=gene-NDY25_09310;Dbxref=NCBI_GP:UUF04118.1;Name=UUF04118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348972.1;locus_tag=NDY25_09310;product=1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=UUF04118.1;transl_table=11 CP098604.1 Genbank gene 2088619 2089302 . - . ID=gene-NDY25_09315;Name=NDY25_09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09315 CP098604.1 Protein Homology CDS 2088619 2089302 . - 0 ID=cds-UUF04595.1;Parent=gene-NDY25_09315;Dbxref=NCBI_GP:UUF04595.1;Name=UUF04595.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443853.1;locus_tag=NDY25_09315;product=ketosynthase;protein_id=UUF04595.1;transl_table=11 CP098604.1 Genbank gene 2089340 2089609 . - . ID=gene-NDY25_09320;Name=xanC;gbkey=Gene;gene=xanC;gene_biotype=protein_coding;locus_tag=NDY25_09320 CP098604.1 Protein Homology CDS 2089340 2089609 . - 0 ID=cds-UUF04119.1;Parent=gene-NDY25_09320;Dbxref=NCBI_GP:UUF04119.1;Name=UUF04119.1;gbkey=CDS;gene=xanC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300738.1;locus_tag=NDY25_09320;product=xanthomonadin biosynthesis acyl carrier protein XanC;protein_id=UUF04119.1;transl_table=11 CP098604.1 Genbank gene 2089948 2091294 . + . ID=gene-NDY25_09325;Name=NDY25_09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09325 CP098604.1 Protein Homology CDS 2089948 2091294 . + 0 ID=cds-UUF04596.1;Parent=gene-NDY25_09325;Dbxref=NCBI_GP:UUF04596.1;Name=UUF04596.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117708.1;locus_tag=NDY25_09325;product=FAD-dependent oxidoreductase;protein_id=UUF04596.1;transl_table=11 CP098604.1 Genbank gene 2091291 2092298 . + . ID=gene-NDY25_09330;Name=NDY25_09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09330 CP098604.1 Protein Homology CDS 2091291 2092298 . + 0 ID=cds-UUF04120.1;Parent=gene-NDY25_09330;Dbxref=NCBI_GP:UUF04120.1;Name=UUF04120.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487396.1;locus_tag=NDY25_09330;product=pteridine-dependent deoxygenase;protein_id=UUF04120.1;transl_table=11 CP098604.1 Genbank gene 2092300 2093313 . - . ID=gene-NDY25_09335;Name=NDY25_09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09335 CP098604.1 GeneMarkS-2+ CDS 2092300 2093313 . - 0 ID=cds-UUF04121.1;Parent=gene-NDY25_09335;Dbxref=NCBI_GP:UUF04121.1;Name=UUF04121.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09335;product=hypothetical protein;protein_id=UUF04121.1;transl_table=11 CP098604.1 Genbank gene 2093349 2094692 . - . ID=gene-NDY25_09340;Name=NDY25_09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09340 CP098604.1 Protein Homology CDS 2093349 2094692 . - 0 ID=cds-UUF04122.1;Parent=gene-NDY25_09340;Dbxref=NCBI_GP:UUF04122.1;Name=UUF04122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156318.1;locus_tag=NDY25_09340;product=AMP-binding protein;protein_id=UUF04122.1;transl_table=11 CP098604.1 Genbank pseudogene 2095100 2097448 . + . ID=gene-NDY25_09345;Name=NDY25_09345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_09345;pseudo=true CP098604.1 Protein Homology CDS 2095100 2097448 . + 0 ID=cds-NDY25_09345;Parent=gene-NDY25_09345;Note=internal stop;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809629.1;locus_tag=NDY25_09345;product=prolyl oligopeptidase family serine peptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2097760 2098476 . + . ID=gene-NDY25_09350;Name=NDY25_09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09350 CP098604.1 Protein Homology CDS 2097760 2098476 . + 0 ID=cds-UUF04123.1;Parent=gene-NDY25_09350;Dbxref=NCBI_GP:UUF04123.1;Name=UUF04123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162653.1;locus_tag=NDY25_09350;product=hypothetical protein;protein_id=UUF04123.1;transl_table=11 CP098604.1 Genbank gene 2098473 2099048 . + . ID=gene-NDY25_09355;Name=NDY25_09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09355 CP098604.1 Protein Homology CDS 2098473 2099048 . + 0 ID=cds-UUF04124.1;Parent=gene-NDY25_09355;Dbxref=NCBI_GP:UUF04124.1;Name=UUF04124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091392.1;locus_tag=NDY25_09355;product=hypothetical protein;protein_id=UUF04124.1;transl_table=11 CP098604.1 Genbank gene 2099714 2100613 . + . ID=gene-NDY25_09360;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=NDY25_09360 CP098604.1 Protein Homology CDS 2099714 2100613 . + 0 ID=cds-UUF04125.1;Parent=gene-NDY25_09360;Dbxref=NCBI_GP:UUF04125.1;Name=UUF04125.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967076.1;locus_tag=NDY25_09360;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=UUF04125.1;transl_table=11 CP098604.1 Genbank gene 2101039 2103840 . - . ID=gene-NDY25_09365;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=NDY25_09365 CP098604.1 Protein Homology CDS 2101039 2103840 . - 0 ID=cds-UUF04126.1;Parent=gene-NDY25_09365;Dbxref=NCBI_GP:UUF04126.1;Name=UUF04126.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159421.1;locus_tag=NDY25_09365;product=DNA polymerase I;protein_id=UUF04126.1;transl_table=11 CP098604.1 Genbank gene 2103918 2104199 . + . ID=gene-NDY25_09370;Name=NDY25_09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09370 CP098604.1 Protein Homology CDS 2103918 2104199 . + 0 ID=cds-UUF04127.1;Parent=gene-NDY25_09370;Dbxref=NCBI_GP:UUF04127.1;Name=UUF04127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914773.1;locus_tag=NDY25_09370;product=DUF2782 domain-containing protein;protein_id=UUF04127.1;transl_table=11 CP098604.1 Genbank gene 2104281 2106809 . - . ID=gene-NDY25_09375;Name=NDY25_09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09375 CP098604.1 Protein Homology CDS 2104281 2106809 . - 0 ID=cds-UUF04128.1;Parent=gene-NDY25_09375;Dbxref=NCBI_GP:UUF04128.1;Name=UUF04128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172563.1;locus_tag=NDY25_09375;product=serine/threonine-protein kinase;protein_id=UUF04128.1;transl_table=11 CP098604.1 Genbank gene 2106788 2107327 . - . ID=gene-NDY25_09380;Name=NDY25_09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09380 CP098604.1 Protein Homology CDS 2106788 2107327 . - 0 ID=cds-UUF04129.1;Parent=gene-NDY25_09380;Dbxref=NCBI_GP:UUF04129.1;Name=UUF04129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967112.1;locus_tag=NDY25_09380;product=ECF-type sigma factor;protein_id=UUF04129.1;transl_table=11 CP098604.1 Genbank gene 2107461 2107883 . - . ID=gene-NDY25_09385;Name=NDY25_09385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09385 CP098604.1 Protein Homology CDS 2107461 2107883 . - 0 ID=cds-UUF04130.1;Parent=gene-NDY25_09385;Dbxref=NCBI_GP:UUF04130.1;Name=UUF04130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809469.1;locus_tag=NDY25_09385;product=DUF2147 domain-containing protein;protein_id=UUF04130.1;transl_table=11 CP098604.1 Genbank gene 2108442 2109782 . + . ID=gene-NDY25_09390;Name=NDY25_09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09390 CP098604.1 Protein Homology CDS 2108442 2109782 . + 0 ID=cds-UUF04131.1;Parent=gene-NDY25_09390;Dbxref=NCBI_GP:UUF04131.1;Name=UUF04131.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012371.2;locus_tag=NDY25_09390;product=beta-lactamase family protein;protein_id=UUF04131.1;transl_table=11 CP098604.1 Genbank gene 2110135 2110560 . - . ID=gene-NDY25_09395;Name=NDY25_09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09395 CP098604.1 GeneMarkS-2+ CDS 2110135 2110560 . - 0 ID=cds-UUF04132.1;Parent=gene-NDY25_09395;Dbxref=NCBI_GP:UUF04132.1;Name=UUF04132.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09395;product=hypothetical protein;protein_id=UUF04132.1;transl_table=11 CP098604.1 Genbank gene 2110805 2111872 . - . ID=gene-NDY25_09400;Name=NDY25_09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09400 CP098604.1 Protein Homology CDS 2110805 2111872 . - 0 ID=cds-UUF04133.1;Parent=gene-NDY25_09400;Dbxref=NCBI_GP:UUF04133.1;Name=UUF04133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452695.1;locus_tag=NDY25_09400;product=patatin-like phospholipase family protein;protein_id=UUF04133.1;transl_table=11 CP098604.1 Genbank gene 2112362 2113021 . + . ID=gene-NDY25_09405;Name=NDY25_09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09405 CP098604.1 Protein Homology CDS 2112362 2113021 . + 0 ID=cds-UUF04134.1;Parent=gene-NDY25_09405;Dbxref=NCBI_GP:UUF04134.1;Name=UUF04134.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160263.1;locus_tag=NDY25_09405;product=helix-turn-helix domain-containing protein;protein_id=UUF04134.1;transl_table=11 CP098604.1 Genbank gene 2113154 2113600 . - . ID=gene-NDY25_09410;Name=NDY25_09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09410 CP098604.1 Protein Homology CDS 2113154 2113600 . - 0 ID=cds-UUF04135.1;Parent=gene-NDY25_09410;Dbxref=NCBI_GP:UUF04135.1;Name=UUF04135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489888.1;locus_tag=NDY25_09410;product=universal stress protein;protein_id=UUF04135.1;transl_table=11 CP098604.1 Genbank gene 2114079 2114615 . - . ID=gene-NDY25_09415;Name=NDY25_09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09415 CP098604.1 GeneMarkS-2+ CDS 2114079 2114615 . - 0 ID=cds-UUF04136.1;Parent=gene-NDY25_09415;Dbxref=NCBI_GP:UUF04136.1;Name=UUF04136.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09415;product=hypothetical protein;protein_id=UUF04136.1;transl_table=11 CP098604.1 Genbank gene 2114730 2116916 . - . ID=gene-NDY25_09420;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=mutU,recL;locus_tag=NDY25_09420 CP098604.1 Protein Homology CDS 2114730 2116916 . - 0 ID=cds-UUF04137.1;Parent=gene-NDY25_09420;Dbxref=NCBI_GP:UUF04137.1;Name=UUF04137.1;Ontology_term=GO:0006268,GO:0003677,GO:0003678,GO:0005524,GO:0016787;gbkey=CDS;gene=uvrD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;go_process=DNA unwinding involved in DNA replication|0006268||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809467.1;locus_tag=NDY25_09420;product=DNA helicase II;protein_id=UUF04137.1;transl_table=11 CP098604.1 Genbank gene 2117060 2118451 . - . ID=gene-NDY25_09425;Name=NDY25_09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09425 CP098604.1 Protein Homology CDS 2117060 2118451 . - 0 ID=cds-UUF04138.1;Parent=gene-NDY25_09425;Dbxref=NCBI_GP:UUF04138.1;Name=UUF04138.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157744.1;locus_tag=NDY25_09425;product=FAD-dependent oxidoreductase;protein_id=UUF04138.1;transl_table=11 CP098604.1 Genbank gene 2118533 2119951 . - . ID=gene-NDY25_09430;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=NDY25_09430 CP098604.1 Protein Homology CDS 2118533 2119951 . - 0 ID=cds-UUF04139.1;Parent=gene-NDY25_09430;Dbxref=NCBI_GP:UUF04139.1;Name=UUF04139.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902730.1;locus_tag=NDY25_09430;product=cardiolipin synthase;protein_id=UUF04139.1;transl_table=11 CP098604.1 Genbank gene 2119965 2121275 . - . ID=gene-NDY25_09435;Name=NDY25_09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09435 CP098604.1 Protein Homology CDS 2119965 2121275 . - 0 ID=cds-UUF04140.1;Parent=gene-NDY25_09435;Dbxref=NCBI_GP:UUF04140.1;Name=UUF04140.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452704.1;locus_tag=NDY25_09435;product=LysR family transcriptional regulator;protein_id=UUF04140.1;transl_table=11 CP098604.1 Genbank gene 2121377 2122048 . + . ID=gene-NDY25_09440;Name=NDY25_09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09440 CP098604.1 Protein Homology CDS 2121377 2122048 . + 0 ID=cds-UUF04141.1;Parent=gene-NDY25_09440;Dbxref=NCBI_GP:UUF04141.1;Name=UUF04141.1;Ontology_term=GO:0047443;gbkey=CDS;go_function=4-hydroxy-4-methyl-2-oxoglutarate aldolase activity|0047443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489876.1;locus_tag=NDY25_09440;product=4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase;protein_id=UUF04141.1;transl_table=11 CP098604.1 Genbank gene 2122041 2123096 . + . ID=gene-NDY25_09445;Name=NDY25_09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09445 CP098604.1 Protein Homology CDS 2122041 2123096 . + 0 ID=cds-UUF04142.1;Parent=gene-NDY25_09445;Dbxref=NCBI_GP:UUF04142.1;Name=UUF04142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091428.1;locus_tag=NDY25_09445;product=4-oxalomesaconate tautomerase;protein_id=UUF04142.1;transl_table=11 CP098604.1 Genbank gene 2123463 2124485 . + . ID=gene-NDY25_09450;Name=NDY25_09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09450 CP098604.1 Protein Homology CDS 2123463 2124485 . + 0 ID=cds-UUF04143.1;Parent=gene-NDY25_09450;Dbxref=NCBI_GP:UUF04143.1;Name=UUF04143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572519.1;locus_tag=NDY25_09450;product=amidohydrolase;protein_id=UUF04143.1;transl_table=11 CP098604.1 Genbank gene 2124760 2124927 . - . ID=gene-NDY25_09455;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=NDY25_09455 CP098604.1 Protein Homology CDS 2124760 2124927 . - 0 ID=cds-UUF04144.1;Parent=gene-NDY25_09455;Dbxref=NCBI_GP:UUF04144.1;Name=UUF04144.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmG;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001051801.1;locus_tag=NDY25_09455;product=50S ribosomal protein L33;protein_id=UUF04144.1;transl_table=11 CP098604.1 Genbank gene 2124941 2125177 . - . ID=gene-NDY25_09460;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=NDY25_09460 CP098604.1 Protein Homology CDS 2124941 2125177 . - 0 ID=cds-UUF04145.1;Parent=gene-NDY25_09460;Dbxref=NCBI_GP:UUF04145.1;Name=UUF04145.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rpmB;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185625.1;locus_tag=NDY25_09460;product=50S ribosomal protein L28;protein_id=UUF04145.1;transl_table=11 CP098604.1 Genbank gene 2125454 2126086 . - . ID=gene-NDY25_09465;Name=NDY25_09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09465 CP098604.1 Protein Homology CDS 2125454 2126086 . - 0 ID=cds-UUF04146.1;Parent=gene-NDY25_09465;Dbxref=NCBI_GP:UUF04146.1;Name=UUF04146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572494.1;locus_tag=NDY25_09465;product=cation transporter;protein_id=UUF04146.1;transl_table=11 CP098604.1 Genbank gene 2126083 2129298 . - . ID=gene-NDY25_09470;Name=NDY25_09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09470 CP098604.1 Protein Homology CDS 2126083 2129298 . - 0 ID=cds-UUF04147.1;Parent=gene-NDY25_09470;Dbxref=NCBI_GP:UUF04147.1;Name=UUF04147.1;Ontology_term=GO:0051139,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=metal ion:proton antiporter activity|0051139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451687.1;locus_tag=NDY25_09470;product=CusA/CzcA family heavy metal efflux RND transporter;protein_id=UUF04147.1;transl_table=11 CP098604.1 Genbank gene 2129475 2130737 . - . ID=gene-NDY25_09475;Name=NDY25_09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09475 CP098604.1 Protein Homology CDS 2129475 2130737 . - 0 ID=cds-UUF04148.1;Parent=gene-NDY25_09475;Dbxref=NCBI_GP:UUF04148.1;Name=UUF04148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487715.1;locus_tag=NDY25_09475;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF04148.1;transl_table=11 CP098604.1 Genbank gene 2130962 2132233 . - . ID=gene-NDY25_09480;Name=NDY25_09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09480 CP098604.1 Protein Homology CDS 2130962 2132233 . - 0 ID=cds-UUF04149.1;Parent=gene-NDY25_09480;Dbxref=NCBI_GP:UUF04149.1;Name=UUF04149.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902721.1;locus_tag=NDY25_09480;product=TolC family protein;protein_id=UUF04149.1;transl_table=11 CP098604.1 Genbank gene 2132289 2132672 . - . ID=gene-NDY25_09485;Name=NDY25_09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09485 CP098604.1 Protein Homology CDS 2132289 2132672 . - 0 ID=cds-UUF04150.1;Parent=gene-NDY25_09485;Dbxref=NCBI_GP:UUF04150.1;Name=UUF04150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374345.1;locus_tag=NDY25_09485;product=hypothetical protein;protein_id=UUF04150.1;transl_table=11 CP098604.1 Genbank gene 2133370 2135196 . - . ID=gene-NDY25_09490;Name=NDY25_09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09490 CP098604.1 Protein Homology CDS 2133370 2135196 . - 0 ID=cds-UUF04151.1;Parent=gene-NDY25_09490;Dbxref=NCBI_GP:UUF04151.1;Name=UUF04151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451652.1;locus_tag=NDY25_09490;product=DUF885 family protein;protein_id=UUF04151.1;transl_table=11 CP098604.1 Genbank pseudogene 2135422 2136062 . - . ID=gene-NDY25_09495;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=pseudogene;locus_tag=NDY25_09495;pseudo=true CP098604.1 Protein Homology CDS 2135422 2136062 . - 0 ID=cds-NDY25_09495;Parent=gene-NDY25_09495;Note=frameshifted;Ontology_term=GO:0031167,GO:0046118,GO:0008168,GO:0005575;gbkey=CDS;gene=rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901826.1;locus_tag=NDY25_09495;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2136418 2138046 . + . ID=gene-NDY25_09500;Name=NDY25_09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09500 CP098604.1 Protein Homology CDS 2136418 2138046 . + 0 ID=cds-UUF04152.1;Parent=gene-NDY25_09500;Dbxref=NCBI_GP:UUF04152.1;Name=UUF04152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901821.1;locus_tag=NDY25_09500;product=alkaline phosphatase D family protein;protein_id=UUF04152.1;transl_table=11 CP098604.1 Genbank gene 2138314 2139891 . + . ID=gene-NDY25_09505;Name=NDY25_09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09505 CP098604.1 Protein Homology CDS 2138314 2139891 . + 0 ID=cds-UUF04153.1;Parent=gene-NDY25_09505;Dbxref=NCBI_GP:UUF04153.1;Name=UUF04153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501577.1;locus_tag=NDY25_09505;product=alkaline phosphatase D family protein;protein_id=UUF04153.1;transl_table=11 CP098604.1 Genbank gene 2140024 2140620 . - . ID=gene-NDY25_09510;Name=NDY25_09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09510 CP098604.1 Protein Homology CDS 2140024 2140620 . - 0 ID=cds-UUF04154.1;Parent=gene-NDY25_09510;Dbxref=NCBI_GP:UUF04154.1;Name=UUF04154.1;Ontology_term=GO:0000287,GO:0008897;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575969.1;locus_tag=NDY25_09510;product=4'-phosphopantetheinyl transferase superfamily protein;protein_id=UUF04154.1;transl_table=11 CP098604.1 Genbank gene 2140747 2140998 . + . ID=gene-NDY25_09515;Name=NDY25_09515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09515 CP098604.1 Protein Homology CDS 2140747 2140998 . + 0 ID=cds-UUF04155.1;Parent=gene-NDY25_09515;Dbxref=NCBI_GP:UUF04155.1;Name=UUF04155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409801.1;locus_tag=NDY25_09515;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=UUF04155.1;transl_table=11 CP098604.1 Genbank gene 2141068 2141505 . - . ID=gene-NDY25_09520;Name=NDY25_09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09520 CP098604.1 Protein Homology CDS 2141068 2141505 . - 0 ID=cds-UUF04156.1;Parent=gene-NDY25_09520;Dbxref=NCBI_GP:UUF04156.1;Name=UUF04156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575974.1;locus_tag=NDY25_09520;product=GFA family protein;protein_id=UUF04156.1;transl_table=11 CP098604.1 Genbank gene 2141502 2142281 . - . ID=gene-NDY25_09525;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=NDY25_09525 CP098604.1 Protein Homology CDS 2141502 2142281 . - 0 ID=cds-UUF04157.1;Parent=gene-NDY25_09525;Dbxref=NCBI_GP:UUF04157.1;Name=UUF04157.1;Ontology_term=GO:0006281,GO:0008853;gbkey=CDS;gene=xth;go_function=exodeoxyribonuclease III activity|0008853||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995484.1;locus_tag=NDY25_09525;product=exodeoxyribonuclease III;protein_id=UUF04157.1;transl_table=11 CP098604.1 Genbank gene 2142334 2143590 . - . ID=gene-NDY25_09530;Name=NDY25_09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09530 CP098604.1 Protein Homology CDS 2142334 2143590 . - 0 ID=cds-UUF04158.1;Parent=gene-NDY25_09530;Dbxref=NCBI_GP:UUF04158.1;Name=UUF04158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238109.1;locus_tag=NDY25_09530;product=phosphodiester glycosidase family protein;protein_id=UUF04158.1;transl_table=11 CP098604.1 Genbank gene 2143705 2144907 . - . ID=gene-NDY25_09535;Name=NDY25_09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09535 CP098604.1 Protein Homology CDS 2143705 2144907 . - 0 ID=cds-UUF04159.1;Parent=gene-NDY25_09535;Dbxref=NCBI_GP:UUF04159.1;Name=UUF04159.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012801.2;locus_tag=NDY25_09535;product=TonB-dependent receptor;protein_id=UUF04159.1;transl_table=11 CP098604.1 Genbank pseudogene 2144994 2146265 . - . ID=gene-NDY25_09540;Name=NDY25_09540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_09540;pseudo=true CP098604.1 Protein Homology CDS 2144994 2146265 . - 0 ID=cds-NDY25_09540;Parent=gene-NDY25_09540;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR01782.1;locus_tag=NDY25_09540;product=TonB-dependent receptor plug domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2146369 2147517 . + . ID=gene-NDY25_09545;Name=NDY25_09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09545 CP098604.1 Protein Homology CDS 2146369 2147517 . + 0 ID=cds-UUF04160.1;Parent=gene-NDY25_09545;Dbxref=NCBI_GP:UUF04160.1;Name=UUF04160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451663.1;locus_tag=NDY25_09545;product=ROK family transcriptional regulator;protein_id=UUF04160.1;transl_table=11 CP098604.1 Genbank gene 2147602 2148357 . - . ID=gene-NDY25_09550;Name=NDY25_09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09550 CP098604.1 GeneMarkS-2+ CDS 2147602 2148357 . - 0 ID=cds-UUF04161.1;Parent=gene-NDY25_09550;Dbxref=NCBI_GP:UUF04161.1;Name=UUF04161.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09550;product=hypothetical protein;protein_id=UUF04161.1;transl_table=11 CP098604.1 Genbank gene 2148393 2149262 . - . ID=gene-NDY25_09555;Name=NDY25_09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09555 CP098604.1 Protein Homology CDS 2148393 2149262 . - 0 ID=cds-UUF04162.1;Parent=gene-NDY25_09555;Dbxref=NCBI_GP:UUF04162.1;Name=UUF04162.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024545.2;locus_tag=NDY25_09555;product=peptidyl-prolyl cis-trans isomerase;protein_id=UUF04162.1;transl_table=11 CP098604.1 Genbank gene 2149348 2150382 . - . ID=gene-NDY25_09560;Name=NDY25_09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09560 CP098604.1 Protein Homology CDS 2149348 2150382 . - 0 ID=cds-UUF04597.1;Parent=gene-NDY25_09560;Dbxref=NCBI_GP:UUF04597.1;Name=UUF04597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908349.1;locus_tag=NDY25_09560;product=glycerophosphodiester phosphodiesterase family protein;protein_id=UUF04597.1;transl_table=11 CP098604.1 Genbank gene 2150661 2151424 . + . ID=gene-NDY25_09565;Name=NDY25_09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09565 CP098604.1 Protein Homology CDS 2150661 2150976 . + 0 ID=cds-UUF04598.1;Parent=gene-NDY25_09565;Dbxref=NCBI_GP:UUF04598.1;Name=UUF04598.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_09565;product=IS5 family transposase;protein_id=UUF04598.1;transl_table=11 CP098604.1 Protein Homology CDS 2150976 2151424 . + 2 ID=cds-UUF04598.1;Parent=gene-NDY25_09565;Dbxref=NCBI_GP:UUF04598.1;Name=UUF04598.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_09565;product=IS5 family transposase;protein_id=UUF04598.1;transl_table=11 CP098604.1 Genbank gene 2151715 2153442 . - . ID=gene-NDY25_09570;Name=NDY25_09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09570 CP098604.1 Protein Homology CDS 2151715 2153442 . - 0 ID=cds-UUF04163.1;Parent=gene-NDY25_09570;Dbxref=NCBI_GP:UUF04163.1;Name=UUF04163.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304713.1;locus_tag=NDY25_09570;product=cation acetate symporter;protein_id=UUF04163.1;transl_table=11 CP098604.1 Genbank gene 2153439 2153756 . - . ID=gene-NDY25_09575;Name=NDY25_09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09575 CP098604.1 Protein Homology CDS 2153439 2153756 . - 0 ID=cds-UUF04164.1;Parent=gene-NDY25_09575;Dbxref=NCBI_GP:UUF04164.1;Name=UUF04164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451668.1;locus_tag=NDY25_09575;product=DUF485 domain-containing protein;protein_id=UUF04164.1;transl_table=11 CP098604.1 Genbank gene 2153826 2155208 . - . ID=gene-NDY25_09580;Name=NDY25_09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09580 CP098604.1 Protein Homology CDS 2153826 2155208 . - 0 ID=cds-UUF04165.1;Parent=gene-NDY25_09580;Dbxref=NCBI_GP:UUF04165.1;Name=UUF04165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575984.1;locus_tag=NDY25_09580;product=porin;protein_id=UUF04165.1;transl_table=11 CP098604.1 Genbank gene 2155504 2157447 . + . ID=gene-NDY25_09585;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=NDY25_09585 CP098604.1 Protein Homology CDS 2155504 2157447 . + 0 ID=cds-UUF04166.1;Parent=gene-NDY25_09585;Dbxref=NCBI_GP:UUF04166.1;Name=UUF04166.1;Ontology_term=GO:0019427,GO:0003987;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003466986.1;locus_tag=NDY25_09585;product=acetate--CoA ligase;protein_id=UUF04166.1;transl_table=11 CP098604.1 Genbank gene 2157688 2158356 . + . ID=gene-NDY25_09590;Name=NDY25_09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09590 CP098604.1 Protein Homology CDS 2157688 2158356 . + 0 ID=cds-UUF04167.1;Parent=gene-NDY25_09590;Dbxref=NCBI_GP:UUF04167.1;Name=UUF04167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156036.1;locus_tag=NDY25_09590;product=response regulator transcription factor;protein_id=UUF04167.1;transl_table=11 CP098604.1 Genbank gene 2158419 2158913 . - . ID=gene-NDY25_09595;Name=NDY25_09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09595 CP098604.1 Protein Homology CDS 2158419 2158913 . - 0 ID=cds-UUF04168.1;Parent=gene-NDY25_09595;Dbxref=NCBI_GP:UUF04168.1;Name=UUF04168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451672.1;locus_tag=NDY25_09595;product=hypothetical protein;protein_id=UUF04168.1;transl_table=11 CP098604.1 Genbank gene 2159191 2160111 . + . ID=gene-NDY25_09600;Name=NDY25_09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09600 CP098604.1 Protein Homology CDS 2159191 2160111 . + 0 ID=cds-UUF04169.1;Parent=gene-NDY25_09600;Dbxref=NCBI_GP:UUF04169.1;Name=UUF04169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451673.1;locus_tag=NDY25_09600;product=DUF4424 domain-containing protein;protein_id=UUF04169.1;transl_table=11 CP098604.1 Genbank gene 2160391 2160954 . + . ID=gene-NDY25_09605;Name=NDY25_09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09605 CP098604.1 Protein Homology CDS 2160391 2160954 . + 0 ID=cds-UUF04599.1;Parent=gene-NDY25_09605;Dbxref=NCBI_GP:UUF04599.1;Name=UUF04599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156037.1;locus_tag=NDY25_09605;product=TlpA family protein disulfide reductase;protein_id=UUF04599.1;transl_table=11 CP098604.1 Genbank gene 2160958 2161161 . + . ID=gene-NDY25_09610;Name=NDY25_09610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09610 CP098604.1 Protein Homology CDS 2160958 2161161 . + 0 ID=cds-UUF04170.1;Parent=gene-NDY25_09610;Dbxref=NCBI_GP:UUF04170.1;Name=UUF04170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849177.1;locus_tag=NDY25_09610;product=hypothetical protein;protein_id=UUF04170.1;transl_table=11 CP098604.1 Genbank gene 2161482 2162531 . + . ID=gene-NDY25_09615;Name=NDY25_09615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09615 CP098604.1 Protein Homology CDS 2161482 2162531 . + 0 ID=cds-UUF04171.1;Parent=gene-NDY25_09615;Dbxref=NCBI_GP:UUF04171.1;Name=UUF04171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260811.1;locus_tag=NDY25_09615;product=aldo/keto reductase;protein_id=UUF04171.1;transl_table=11 CP098604.1 Genbank gene 2162528 2163400 . + . ID=gene-NDY25_09620;Name=NDY25_09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09620 CP098604.1 Protein Homology CDS 2162528 2163400 . + 0 ID=cds-UUF04172.1;Parent=gene-NDY25_09620;Dbxref=NCBI_GP:UUF04172.1;Name=UUF04172.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930619.1;locus_tag=NDY25_09620;product=amidohydrolase family protein;protein_id=UUF04172.1;transl_table=11 CP098604.1 Genbank gene 2163397 2164167 . + . ID=gene-NDY25_09625;Name=NDY25_09625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09625 CP098604.1 Protein Homology CDS 2163397 2164167 . + 0 ID=cds-UUF04173.1;Parent=gene-NDY25_09625;Dbxref=NCBI_GP:UUF04173.1;Name=UUF04173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439611.1;locus_tag=NDY25_09625;product=SDR family oxidoreductase;protein_id=UUF04173.1;transl_table=11 CP098604.1 Genbank gene 2164336 2165193 . + . ID=gene-NDY25_09630;Name=NDY25_09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09630 CP098604.1 Protein Homology CDS 2164336 2165193 . + 0 ID=cds-UUF04174.1;Parent=gene-NDY25_09630;Dbxref=NCBI_GP:UUF04174.1;Name=UUF04174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091443.1;locus_tag=NDY25_09630;product=fumarylacetoacetate hydrolase family protein;protein_id=UUF04174.1;transl_table=11 CP098604.1 Genbank gene 2165671 2166990 . + . ID=gene-NDY25_09635;Name=NDY25_09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09635 CP098604.1 Protein Homology CDS 2165671 2166990 . + 0 ID=cds-UUF04175.1;Parent=gene-NDY25_09635;Dbxref=NCBI_GP:UUF04175.1;Name=UUF04175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374394.1;locus_tag=NDY25_09635;product=L-fuconate dehydratase;protein_id=UUF04175.1;transl_table=11 CP098604.1 Genbank gene 2167908 2168276 . - . ID=gene-NDY25_09640;Name=NDY25_09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09640 CP098604.1 Protein Homology CDS 2167908 2168276 . - 0 ID=cds-UUF04176.1;Parent=gene-NDY25_09640;Dbxref=NCBI_GP:UUF04176.1;Name=UUF04176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451877.1;locus_tag=NDY25_09640;product=L-fucose mutarotase;protein_id=UUF04176.1;transl_table=11 CP098604.1 Genbank gene 2168273 2169577 . - . ID=gene-NDY25_09645;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=NDY25_09645 CP098604.1 Protein Homology CDS 2168273 2169577 . - 0 ID=cds-UUF04177.1;Parent=gene-NDY25_09645;Dbxref=NCBI_GP:UUF04177.1;Name=UUF04177.1;Ontology_term=GO:0015756,GO:0015535,GO:0005887;gbkey=CDS;gene=fucP;go_component=integral component of plasma membrane|0005887||IEA;go_function=fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451876.1;locus_tag=NDY25_09645;product=L-fucose:H+ symporter permease;protein_id=UUF04177.1;transl_table=11 CP098604.1 Genbank gene 2169758 2170507 . + . ID=gene-NDY25_09650;Name=NDY25_09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09650 CP098604.1 Protein Homology CDS 2169758 2170507 . + 0 ID=cds-UUF04178.1;Parent=gene-NDY25_09650;Dbxref=NCBI_GP:UUF04178.1;Name=UUF04178.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156047.1;locus_tag=NDY25_09650;product=helix-turn-helix domain-containing protein;protein_id=UUF04178.1;transl_table=11 CP098604.1 Genbank gene 2170622 2171737 . + . ID=gene-NDY25_09655;Name=NDY25_09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09655 CP098604.1 Protein Homology CDS 2170622 2171737 . + 0 ID=cds-UUF04179.1;Parent=gene-NDY25_09655;Dbxref=NCBI_GP:UUF04179.1;Name=UUF04179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156048.1;locus_tag=NDY25_09655;product=AraC family transcriptional regulator;protein_id=UUF04179.1;transl_table=11 CP098604.1 Genbank gene 2171847 2173340 . + . ID=gene-NDY25_09660;Name=NDY25_09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09660 CP098604.1 Protein Homology CDS 2171847 2173340 . + 0 ID=cds-UUF04600.1;Parent=gene-NDY25_09660;Dbxref=NCBI_GP:UUF04600.1;Name=UUF04600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451873.1;locus_tag=NDY25_09660;product=S41 family peptidase;protein_id=UUF04600.1;transl_table=11 CP098604.1 cmsearch riboswitch 2173456 2173584 . + . ID=id-CP098604.1:2173456..2173584;Dbxref=RFAM:RF00080;Note=yybP-ykoY riboswitch is a manganese riboswitch that directly binds Mn;bound_moiety=manganese;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 2173631 2174215 . + . ID=gene-NDY25_09665;Name=NDY25_09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09665 CP098604.1 Protein Homology CDS 2173631 2174215 . + 0 ID=cds-UUF04180.1;Parent=gene-NDY25_09665;Dbxref=NCBI_GP:UUF04180.1;Name=UUF04180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_031424890.1;locus_tag=NDY25_09665;product=manganese efflux pump MntP family protein;protein_id=UUF04180.1;transl_table=11 CP098604.1 Genbank gene 2174397 2177846 . - . ID=gene-NDY25_09670;Name=NDY25_09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09670 CP098604.1 Protein Homology CDS 2174397 2177846 . - 0 ID=cds-UUF04181.1;Parent=gene-NDY25_09670;Dbxref=NCBI_GP:UUF04181.1;Name=UUF04181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487640.1;locus_tag=NDY25_09670;product=hybrid sensor histidine kinase/response regulator;protein_id=UUF04181.1;transl_table=11 CP098604.1 Genbank gene 2178423 2180825 . - . ID=gene-NDY25_09675;Name=NDY25_09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09675 CP098604.1 Protein Homology CDS 2178423 2180825 . - 0 ID=cds-UUF04601.1;Parent=gene-NDY25_09675;Dbxref=NCBI_GP:UUF04601.1;Name=UUF04601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304638.1;locus_tag=NDY25_09675;product=NdvB protein;protein_id=UUF04601.1;transl_table=11 CP098604.1 Genbank gene 2180843 2182225 . - . ID=gene-NDY25_09680;Name=NDY25_09680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09680 CP098604.1 Protein Homology CDS 2180843 2182225 . - 0 ID=cds-UUF04602.1;Parent=gene-NDY25_09680;Dbxref=NCBI_GP:UUF04602.1;Name=UUF04602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901774.1;locus_tag=NDY25_09680;product=MFS transporter;protein_id=UUF04602.1;transl_table=11 CP098604.1 Genbank gene 2182384 2182968 . + . ID=gene-NDY25_09685;Name=NDY25_09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09685 CP098604.1 Protein Homology CDS 2182384 2182968 . + 0 ID=cds-UUF04182.1;Parent=gene-NDY25_09685;Dbxref=NCBI_GP:UUF04182.1;Name=UUF04182.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449108.1;locus_tag=NDY25_09685;product=gluconokinase;protein_id=UUF04182.1;transl_table=11 CP098604.1 Genbank gene 2183460 2185190 . + . ID=gene-NDY25_09690;Name=NDY25_09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09690 CP098604.1 Protein Homology CDS 2183460 2185190 . + 0 ID=cds-UUF04183.1;Parent=gene-NDY25_09690;Dbxref=NCBI_GP:UUF04183.1;Name=UUF04183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923088.1;locus_tag=NDY25_09690;product=PQQ-binding-like beta-propeller repeat protein;protein_id=UUF04183.1;transl_table=11 CP098604.1 Genbank gene 2185289 2185516 . - . ID=gene-NDY25_09695;Name=NDY25_09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09695 CP098604.1 Protein Homology CDS 2185289 2185516 . - 0 ID=cds-UUF04184.1;Parent=gene-NDY25_09695;Dbxref=NCBI_GP:UUF04184.1;Name=UUF04184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849816.1;locus_tag=NDY25_09695;product=hypothetical protein;protein_id=UUF04184.1;transl_table=11 CP098604.1 Genbank gene 2185497 2185946 . - . ID=gene-NDY25_09700;Name=NDY25_09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09700 CP098604.1 Protein Homology CDS 2185497 2185946 . - 0 ID=cds-UUF04185.1;Parent=gene-NDY25_09700;Dbxref=NCBI_GP:UUF04185.1;Name=UUF04185.1;Ontology_term=GO:0003855;gbkey=CDS;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966506.1;locus_tag=NDY25_09700;product=type II 3-dehydroquinate dehydratase;protein_id=UUF04185.1;transl_table=11 CP098604.1 Genbank gene 2185958 2186386 . - . ID=gene-NDY25_09705;Name=NDY25_09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09705 CP098604.1 Protein Homology CDS 2185958 2186386 . - 0 ID=cds-UUF04186.1;Parent=gene-NDY25_09705;Dbxref=NCBI_GP:UUF04186.1;Name=UUF04186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303396.1;locus_tag=NDY25_09705;product=hypothetical protein;protein_id=UUF04186.1;transl_table=11 CP098604.1 Genbank gene 2186556 2187215 . - . ID=gene-NDY25_09710;Name=NDY25_09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09710 CP098604.1 Protein Homology CDS 2186556 2187215 . - 0 ID=cds-UUF04187.1;Parent=gene-NDY25_09710;Dbxref=NCBI_GP:UUF04187.1;Name=UUF04187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439623.1;locus_tag=NDY25_09710;product=hypothetical protein;protein_id=UUF04187.1;transl_table=11 CP098604.1 Genbank gene 2187197 2191051 . - . ID=gene-NDY25_09715;Name=NDY25_09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09715 CP098604.1 Protein Homology CDS 2187197 2191051 . - 0 ID=cds-UUF04188.1;Parent=gene-NDY25_09715;Dbxref=NCBI_GP:UUF04188.1;Name=UUF04188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156059.1;locus_tag=NDY25_09715;product=translocation/assembly module TamB;protein_id=UUF04188.1;transl_table=11 CP098604.1 Genbank gene 2191048 2192829 . - . ID=gene-NDY25_09720;Name=NDY25_09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09720 CP098604.1 Protein Homology CDS 2191048 2192829 . - 0 ID=cds-UUF04189.1;Parent=gene-NDY25_09720;Dbxref=NCBI_GP:UUF04189.1;Name=UUF04189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349065.1;locus_tag=NDY25_09720;product=autotransporter assembly complex protein TamA;protein_id=UUF04189.1;transl_table=11 CP098604.1 Genbank gene 2193085 2195775 . + . ID=gene-NDY25_09725;Name=NDY25_09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09725 CP098604.1 Protein Homology CDS 2193085 2195775 . + 0 ID=cds-UUF04603.1;Parent=gene-NDY25_09725;Dbxref=NCBI_GP:UUF04603.1;Name=UUF04603.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163068.1;locus_tag=NDY25_09725;product=TonB-dependent receptor;protein_id=UUF04603.1;transl_table=11 CP098604.1 Genbank gene 2196030 2197619 . - . ID=gene-NDY25_09730;Name=NDY25_09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09730 CP098604.1 Protein Homology CDS 2196030 2197619 . - 0 ID=cds-UUF04190.1;Parent=gene-NDY25_09730;Dbxref=NCBI_GP:UUF04190.1;Name=UUF04190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156062.1;locus_tag=NDY25_09730;product=sulfotransferase;protein_id=UUF04190.1;transl_table=11 CP098604.1 Genbank gene 2197619 2199856 . - . ID=gene-NDY25_09735;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=NDY25_09735 CP098604.1 Protein Homology CDS 2197619 2199856 . - 0 ID=cds-UUF04191.1;Parent=gene-NDY25_09735;Dbxref=NCBI_GP:UUF04191.1;Name=UUF04191.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyS;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409707.1;locus_tag=NDY25_09735;product=glycine--tRNA ligase subunit beta;protein_id=UUF04191.1;transl_table=11 CP098604.1 Genbank gene 2200152 2201060 . - . ID=gene-NDY25_09740;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=NDY25_09740 CP098604.1 Protein Homology CDS 2200152 2201060 . - 0 ID=cds-UUF04192.1;Parent=gene-NDY25_09740;Dbxref=NCBI_GP:UUF04192.1;Name=UUF04192.1;Ontology_term=GO:0006426,GO:0004820,GO:0009345;gbkey=CDS;gene=glyQ;go_component=glycine-tRNA ligase complex|0009345||IEA;go_function=glycine-tRNA ligase activity|0004820||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156064.1;locus_tag=NDY25_09740;product=glycine--tRNA ligase subunit alpha;protein_id=UUF04192.1;transl_table=11 CP098604.1 Genbank gene 2201151 2202965 . + . ID=gene-NDY25_09745;Name=NDY25_09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09745 CP098604.1 Protein Homology CDS 2201151 2202965 . + 0 ID=cds-UUF04193.1;Parent=gene-NDY25_09745;Dbxref=NCBI_GP:UUF04193.1;Name=UUF04193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803759.1;locus_tag=NDY25_09745;product=GspE/PulE family protein;protein_id=UUF04193.1;transl_table=11 CP098604.1 Genbank gene 2203172 2203315 . + . ID=gene-NDY25_09750;Name=NDY25_09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09750 CP098604.1 GeneMarkS-2+ CDS 2203172 2203315 . + 0 ID=cds-UUF04194.1;Parent=gene-NDY25_09750;Dbxref=NCBI_GP:UUF04194.1;Name=UUF04194.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09750;product=hypothetical protein;protein_id=UUF04194.1;transl_table=11 CP098604.1 Genbank pseudogene 2203434 2210578 . - . ID=gene-NDY25_09755;Name=NDY25_09755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_09755;pseudo=true CP098604.1 Protein Homology CDS 2203434 2210578 . - 0 ID=cds-NDY25_09755;Parent=gene-NDY25_09755;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301754.1;locus_tag=NDY25_09755;product=type III effector protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2211050 2211802 . + . ID=gene-NDY25_09760;Name=NDY25_09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09760 CP098604.1 Protein Homology CDS 2211050 2211802 . + 0 ID=cds-UUF04195.1;Parent=gene-NDY25_09760;Dbxref=NCBI_GP:UUF04195.1;Name=UUF04195.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154683.1;locus_tag=NDY25_09760;product=glutamine amidotransferase;protein_id=UUF04195.1;transl_table=11 CP098604.1 Genbank gene 2211860 2212759 . + . ID=gene-NDY25_09765;Name=NDY25_09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09765 CP098604.1 Protein Homology CDS 2211860 2212759 . + 0 ID=cds-UUF04196.1;Parent=gene-NDY25_09765;Dbxref=NCBI_GP:UUF04196.1;Name=UUF04196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154682.1;locus_tag=NDY25_09765;product=hypothetical protein;protein_id=UUF04196.1;transl_table=11 CP098604.1 Genbank gene 2213100 2213837 . - . ID=gene-NDY25_09770;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=NDY25_09770 CP098604.1 Protein Homology CDS 2213100 2213837 . - 0 ID=cds-UUF04197.1;Parent=gene-NDY25_09770;Dbxref=NCBI_GP:UUF04197.1;Name=UUF04197.1;Ontology_term=GO:0015628,GO:0005887;gbkey=CDS;gene=tatC;go_component=integral component of plasma membrane|0005887||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929678.1;locus_tag=NDY25_09770;product=twin-arginine translocase subunit TatC;protein_id=UUF04197.1;transl_table=11 CP098604.1 Genbank gene 2213834 2214508 . - . ID=gene-NDY25_09775;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=NDY25_09775 CP098604.1 Protein Homology CDS 2213834 2214508 . - 0 ID=cds-UUF04198.1;Parent=gene-NDY25_09775;Dbxref=NCBI_GP:UUF04198.1;Name=UUF04198.1;Ontology_term=GO:0015031,GO:0015628;gbkey=CDS;gene=tatB;go_process=protein transport|0015031||IEA,protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303486.1;locus_tag=NDY25_09775;product=Sec-independent protein translocase protein TatB;protein_id=UUF04198.1;transl_table=11 CP098604.1 Genbank gene 2214524 2214751 . - . ID=gene-NDY25_09780;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=NDY25_09780 CP098604.1 Protein Homology CDS 2214524 2214751 . - 0 ID=cds-UUF04199.1;Parent=gene-NDY25_09780;Dbxref=NCBI_GP:UUF04199.1;Name=UUF04199.1;Ontology_term=GO:0043953,GO:0016021;gbkey=CDS;gene=tatA;go_component=integral component of membrane|0016021||IEA;go_process=protein transport by the Tat complex|0043953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449086.1;locus_tag=NDY25_09780;product=Sec-independent protein translocase subunit TatA;protein_id=UUF04199.1;transl_table=11 CP098604.1 Genbank gene 2214824 2215726 . - . ID=gene-NDY25_09785;Name=NDY25_09785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09785 CP098604.1 Protein Homology CDS 2214824 2215726 . - 0 ID=cds-UUF04200.1;Parent=gene-NDY25_09785;Dbxref=NCBI_GP:UUF04200.1;Name=UUF04200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154679.1;locus_tag=NDY25_09785;product=YSC84-related protein;protein_id=UUF04200.1;transl_table=11 CP098604.1 Genbank gene 2215881 2216846 . + . ID=gene-NDY25_09790;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=NDY25_09790 CP098604.1 Protein Homology CDS 2215881 2216846 . + 0 ID=cds-UUF04201.1;Parent=gene-NDY25_09790;Dbxref=NCBI_GP:UUF04201.1;Name=UUF04201.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505180.1;locus_tag=NDY25_09790;product=ferrochelatase;protein_id=UUF04201.1;transl_table=11 CP098604.1 Genbank gene 2216849 2217712 . + . ID=gene-NDY25_09795;Name=NDY25_09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09795 CP098604.1 Protein Homology CDS 2216849 2217712 . + 0 ID=cds-UUF04604.1;Parent=gene-NDY25_09795;Dbxref=NCBI_GP:UUF04604.1;Name=UUF04604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449083.1;locus_tag=NDY25_09795;product=alpha/beta hydrolase;protein_id=UUF04604.1;transl_table=11 CP098604.1 Genbank gene 2217807 2218592 . - . ID=gene-NDY25_09800;Name=NDY25_09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09800 CP098604.1 Protein Homology CDS 2217807 2218592 . - 0 ID=cds-UUF04202.1;Parent=gene-NDY25_09800;Dbxref=NCBI_GP:UUF04202.1;Name=UUF04202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374496.1;locus_tag=NDY25_09800;product=M48 family metallopeptidase;protein_id=UUF04202.1;transl_table=11 CP098604.1 Genbank gene 2219408 2220313 . - . ID=gene-NDY25_09805;Name=NDY25_09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09805 CP098604.1 Protein Homology CDS 2219408 2220313 . - 0 ID=cds-UUF04203.1;Parent=gene-NDY25_09805;Dbxref=NCBI_GP:UUF04203.1;Name=UUF04203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154674.1;locus_tag=NDY25_09805;product=recombination-associated protein RdgC;protein_id=UUF04203.1;transl_table=11 CP098604.1 Genbank gene 2220377 2221291 . - . ID=gene-NDY25_09810;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=NDY25_09810 CP098604.1 Protein Homology CDS 2220377 2221291 . - 0 ID=cds-UUF04204.1;Parent=gene-NDY25_09810;Dbxref=NCBI_GP:UUF04204.1;Name=UUF04204.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374500.1;locus_tag=NDY25_09810;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=UUF04204.1;transl_table=11 CP098604.1 Genbank gene 2221619 2222956 . + . ID=gene-NDY25_09815;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=NDY25_09815 CP098604.1 Protein Homology CDS 2221619 2222956 . + 0 ID=cds-UUF04205.1;Parent=gene-NDY25_09815;Dbxref=NCBI_GP:UUF04205.1;Name=UUF04205.1;Ontology_term=GO:0006098,GO:0042732,GO:0000287,GO:0009045;gbkey=CDS;gene=xylA;go_function=magnesium ion binding|0000287||IEA,xylose isomerase activity|0009045||IEA;go_process=pentose-phosphate shunt|0006098||IEA,D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171248.1;locus_tag=NDY25_09815;product=xylose isomerase;protein_id=UUF04205.1;transl_table=11 CP098604.1 Genbank gene 2223026 2224099 . - . ID=gene-NDY25_09820;Name=NDY25_09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09820 CP098604.1 Protein Homology CDS 2223026 2224099 . - 0 ID=cds-UUF04206.1;Parent=gene-NDY25_09820;Dbxref=NCBI_GP:UUF04206.1;Name=UUF04206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039170.1;locus_tag=NDY25_09820;product=LacI family DNA-binding transcriptional regulator;protein_id=UUF04206.1;transl_table=11 CP098604.1 Genbank gene 2224261 2226471 . + . ID=gene-NDY25_09825;Name=NDY25_09825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09825 CP098604.1 Protein Homology CDS 2224261 2226471 . + 0 ID=cds-UUF04207.1;Parent=gene-NDY25_09825;Dbxref=NCBI_GP:UUF04207.1;Name=UUF04207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903661.1;locus_tag=NDY25_09825;product=alpha-glucuronidase;protein_id=UUF04207.1;transl_table=11 CP098604.1 Genbank gene 2226468 2228432 . + . ID=gene-NDY25_09830;Name=NDY25_09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09830 CP098604.1 Protein Homology CDS 2226468 2228432 . + 0 ID=cds-UUF04208.1;Parent=gene-NDY25_09830;Dbxref=NCBI_GP:UUF04208.1;Name=UUF04208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155225.1;locus_tag=NDY25_09830;product=9-O-acetylesterase;protein_id=UUF04208.1;transl_table=11 CP098604.1 Genbank gene 2228444 2229703 . + . ID=gene-NDY25_09835;Name=NDY25_09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09835 CP098604.1 Protein Homology CDS 2228444 2229703 . + 0 ID=cds-UUF04209.1;Parent=gene-NDY25_09835;Dbxref=NCBI_GP:UUF04209.1;Name=UUF04209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349089.1;locus_tag=NDY25_09835;product=D-galactonate dehydratase family protein;protein_id=UUF04209.1;transl_table=11 CP098604.1 Genbank gene 2229703 2231397 . + . ID=gene-NDY25_09840;Name=NDY25_09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09840 CP098604.1 Protein Homology CDS 2229703 2231397 . + 0 ID=cds-UUF04210.1;Parent=gene-NDY25_09840;Dbxref=NCBI_GP:UUF04210.1;Name=UUF04210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377888.1;locus_tag=NDY25_09840;product=glycoside hydrolase family 43 protein;protein_id=UUF04210.1;transl_table=11 CP098604.1 Genbank gene 2231400 2234087 . + . ID=gene-NDY25_09845;Name=NDY25_09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09845 CP098604.1 Protein Homology CDS 2231400 2234087 . + 0 ID=cds-UUF04211.1;Parent=gene-NDY25_09845;Dbxref=NCBI_GP:UUF04211.1;Name=UUF04211.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439642.1;locus_tag=NDY25_09845;product=glycoside hydrolase family 3 C-terminal domain-containing protein;protein_id=UUF04211.1;transl_table=11 CP098604.1 Genbank gene 2234199 2235662 . + . ID=gene-NDY25_09850;Name=NDY25_09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09850 CP098604.1 Protein Homology CDS 2234199 2235662 . + 0 ID=cds-UUF04212.1;Parent=gene-NDY25_09850;Dbxref=NCBI_GP:UUF04212.1;Name=UUF04212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039176.1;locus_tag=NDY25_09850;product=mannitol dehydrogenase family protein;protein_id=UUF04212.1;transl_table=11 CP098604.1 Genbank gene 2235877 2236323 . + . ID=gene-NDY25_09855;Name=NDY25_09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09855 CP098604.1 Protein Homology CDS 2235877 2236323 . + 0 ID=cds-UUF04213.1;Parent=gene-NDY25_09855;Dbxref=NCBI_GP:UUF04213.1;Name=UUF04213.1;Ontology_term=GO:0006304,GO:0003677,GO:0004519;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: protein motif:HMM:NF024976.2;locus_tag=NDY25_09855;product=type I restriction endonuclease;protein_id=UUF04213.1;transl_table=11 CP098604.1 Genbank gene 2236257 2236979 . + . ID=gene-NDY25_09860;Name=NDY25_09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09860 CP098604.1 GeneMarkS-2+ CDS 2236257 2236979 . + 0 ID=cds-UUF04214.1;Parent=gene-NDY25_09860;Dbxref=NCBI_GP:UUF04214.1;Name=UUF04214.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_09860;product=restriction endonuclease;protein_id=UUF04214.1;transl_table=11 CP098604.1 Genbank gene 2237072 2237458 . - . ID=gene-NDY25_09865;Name=NDY25_09865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09865 CP098604.1 Protein Homology CDS 2237072 2237458 . - 0 ID=cds-UUF04605.1;Parent=gene-NDY25_09865;Dbxref=NCBI_GP:UUF04605.1;Name=UUF04605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903667.1;locus_tag=NDY25_09865;product=VOC family protein;protein_id=UUF04605.1;transl_table=11 CP098604.1 Genbank gene 2238021 2238221 . + . ID=gene-NDY25_09870;Name=NDY25_09870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09870 CP098604.1 Protein Homology CDS 2238021 2238221 . + 0 ID=cds-UUF04215.1;Parent=gene-NDY25_09870;Dbxref=NCBI_GP:UUF04215.1;Name=UUF04215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903668.1;locus_tag=NDY25_09870;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF04215.1;transl_table=11 CP098604.1 Genbank gene 2238444 2238602 . + . ID=gene-NDY25_09875;Name=NDY25_09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09875 CP098604.1 Protein Homology CDS 2238444 2238602 . + 0 ID=cds-UUF04216.1;Parent=gene-NDY25_09875;Dbxref=NCBI_GP:UUF04216.1;Name=UUF04216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374525.1;locus_tag=NDY25_09875;product=DUF2256 domain-containing protein;protein_id=UUF04216.1;transl_table=11 CP098604.1 Genbank gene 2238838 2239842 . + . ID=gene-NDY25_09880;Name=NDY25_09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09880 CP098604.1 Protein Homology CDS 2238838 2239842 . + 0 ID=cds-UUF04217.1;Parent=gene-NDY25_09880;Dbxref=NCBI_GP:UUF04217.1;Name=UUF04217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448671.1;locus_tag=NDY25_09880;product=2-hydroxyacid dehydrogenase;protein_id=UUF04217.1;transl_table=11 CP098604.1 Genbank gene 2239881 2241503 . + . ID=gene-NDY25_09885;Name=NDY25_09885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09885 CP098604.1 Protein Homology CDS 2239881 2241503 . + 0 ID=cds-UUF04218.1;Parent=gene-NDY25_09885;Dbxref=NCBI_GP:UUF04218.1;Name=UUF04218.1;Ontology_term=GO:0015718,GO:0008028,GO:0005887;gbkey=CDS;go_component=integral component of plasma membrane|0005887||IEA;go_function=monocarboxylic acid transmembrane transporter activity|0008028||IEA;go_process=monocarboxylic acid transport|0015718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448672.1;locus_tag=NDY25_09885;product=lactate permease LctP family transporter;protein_id=UUF04218.1;transl_table=11 CP098604.1 Genbank gene 2241779 2242813 . + . ID=gene-NDY25_09890;Name=NDY25_09890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09890 CP098604.1 Protein Homology CDS 2241779 2242813 . + 0 ID=cds-UUF04219.1;Parent=gene-NDY25_09890;Dbxref=NCBI_GP:UUF04219.1;Name=UUF04219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039181.1;locus_tag=NDY25_09890;product=kelch repeat-containing protein;protein_id=UUF04219.1;transl_table=11 CP098604.1 Genbank gene 2242966 2243670 . + . ID=gene-NDY25_09895;Name=NDY25_09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09895 CP098604.1 Protein Homology CDS 2242966 2243670 . + 0 ID=cds-UUF04220.1;Parent=gene-NDY25_09895;Dbxref=NCBI_GP:UUF04220.1;Name=UUF04220.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024098.2;locus_tag=NDY25_09895;product=DUF3800 domain-containing protein;protein_id=UUF04220.1;transl_table=11 CP098604.1 Genbank gene 2244032 2245069 . - . ID=gene-NDY25_09900;Name=NDY25_09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09900 CP098604.1 Protein Homology CDS 2244032 2245069 . - 0 ID=cds-UUF04221.1;Parent=gene-NDY25_09900;Dbxref=NCBI_GP:UUF04221.1;Name=UUF04221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159657.1;locus_tag=NDY25_09900;product=SMP-30/gluconolactonase/LRE family protein;protein_id=UUF04221.1;transl_table=11 CP098604.1 Genbank gene 2245146 2246330 . - . ID=gene-NDY25_09905;Name=NDY25_09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09905 CP098604.1 Protein Homology CDS 2245146 2246330 . - 0 ID=cds-UUF04222.1;Parent=gene-NDY25_09905;Dbxref=NCBI_GP:UUF04222.1;Name=UUF04222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448675.1;locus_tag=NDY25_09905;product=endo-1%2C4-beta-xylanase;protein_id=UUF04222.1;transl_table=11 CP098604.1 Genbank gene 2246381 2249023 . - . ID=gene-NDY25_09910;Name=NDY25_09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09910 CP098604.1 Protein Homology CDS 2246381 2249023 . - 0 ID=cds-UUF04606.1;Parent=gene-NDY25_09910;Dbxref=NCBI_GP:UUF04606.1;Name=UUF04606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052842.1;locus_tag=NDY25_09910;product=DUF4982 domain-containing protein;protein_id=UUF04606.1;transl_table=11 CP098604.1 Genbank gene 2249256 2250692 . - . ID=gene-NDY25_09915;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=NDY25_09915 CP098604.1 Protein Homology CDS 2249256 2250692 . - 0 ID=cds-UUF04223.1;Parent=gene-NDY25_09915;Dbxref=NCBI_GP:UUF04223.1;Name=UUF04223.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439655.1;locus_tag=NDY25_09915;product=glucuronate isomerase;protein_id=UUF04223.1;transl_table=11 CP098604.1 Genbank gene 2250723 2251712 . - . ID=gene-NDY25_09920;Name=NDY25_09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09920 CP098604.1 Protein Homology CDS 2250723 2251712 . - 0 ID=cds-UUF04224.1;Parent=gene-NDY25_09920;Dbxref=NCBI_GP:UUF04224.1;Name=UUF04224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449514.1;locus_tag=NDY25_09920;product=endo-1%2C4-beta-xylanase;protein_id=UUF04224.1;transl_table=11 CP098604.1 Genbank gene 2251723 2253048 . - . ID=gene-NDY25_09925;Name=NDY25_09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09925 CP098604.1 Protein Homology CDS 2251723 2253048 . - 0 ID=cds-UUF04225.1;Parent=gene-NDY25_09925;Dbxref=NCBI_GP:UUF04225.1;Name=UUF04225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449515.1;locus_tag=NDY25_09925;product=MFS transporter;protein_id=UUF04225.1;transl_table=11 CP098604.1 Genbank gene 2253511 2256450 . + . ID=gene-NDY25_09930;Name=NDY25_09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09930 CP098604.1 Protein Homology CDS 2253511 2256450 . + 0 ID=cds-UUF04226.1;Parent=gene-NDY25_09930;Dbxref=NCBI_GP:UUF04226.1;Name=UUF04226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155199.1;locus_tag=NDY25_09930;product=TonB-dependent receptor;protein_id=UUF04226.1;transl_table=11 CP098604.1 Genbank gene 2256594 2258081 . + . ID=gene-NDY25_09935;Name=NDY25_09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09935 CP098604.1 Protein Homology CDS 2256594 2258081 . + 0 ID=cds-UUF04227.1;Parent=gene-NDY25_09935;Dbxref=NCBI_GP:UUF04227.1;Name=UUF04227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155198.1;locus_tag=NDY25_09935;product=MFS transporter;protein_id=UUF04227.1;transl_table=11 CP098604.1 Genbank gene 2258116 2259150 . + . ID=gene-NDY25_09940;Name=NDY25_09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09940 CP098604.1 Protein Homology CDS 2258116 2259150 . + 0 ID=cds-UUF04228.1;Parent=gene-NDY25_09940;Dbxref=NCBI_GP:UUF04228.1;Name=UUF04228.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573829.1;locus_tag=NDY25_09940;product=glycoside hydrolase family 43 protein;protein_id=UUF04228.1;transl_table=11 CP098604.1 Genbank gene 2259483 2260016 . + . ID=gene-NDY25_09945;Name=NDY25_09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09945 CP098604.1 Protein Homology CDS 2259483 2260016 . + 0 ID=cds-UUF04607.1;Parent=gene-NDY25_09945;Dbxref=NCBI_GP:UUF04607.1;Name=UUF04607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155196.1;locus_tag=NDY25_09945;product=lipocalin family protein;protein_id=UUF04607.1;transl_table=11 CP098604.1 Genbank gene 2260105 2260458 . - . ID=gene-NDY25_09950;Name=NDY25_09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09950 CP098604.1 Protein Homology CDS 2260105 2260458 . - 0 ID=cds-UUF04229.1;Parent=gene-NDY25_09950;Dbxref=NCBI_GP:UUF04229.1;Name=UUF04229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300486.1;locus_tag=NDY25_09950;product=ribonuclease E inhibitor RraB;protein_id=UUF04229.1;transl_table=11 CP098604.1 Genbank gene 2260653 2261225 . - . ID=gene-NDY25_09955;Name=NDY25_09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09955 CP098604.1 Protein Homology CDS 2260653 2261225 . - 0 ID=cds-UUF04230.1;Parent=gene-NDY25_09955;Dbxref=NCBI_GP:UUF04230.1;Name=UUF04230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449526.1;locus_tag=NDY25_09955;product=hypothetical protein;protein_id=UUF04230.1;transl_table=11 CP098604.1 Genbank gene 2261385 2261588 . + . ID=gene-NDY25_09960;Name=NDY25_09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09960 CP098604.1 Protein Homology CDS 2261385 2261588 . + 0 ID=cds-UUF04608.1;Parent=gene-NDY25_09960;Dbxref=NCBI_GP:UUF04608.1;Name=UUF04608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573820.1;locus_tag=NDY25_09960;product=YdcH family protein;protein_id=UUF04608.1;transl_table=11 CP098604.1 Genbank gene 2261923 2262906 . - . ID=gene-NDY25_09965;Name=NDY25_09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09965 CP098604.1 Protein Homology CDS 2261923 2262906 . - 0 ID=cds-UUF04231.1;Parent=gene-NDY25_09965;Dbxref=NCBI_GP:UUF04231.1;Name=UUF04231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932469.1;locus_tag=NDY25_09965;product=zinc-binding dehydrogenase;protein_id=UUF04231.1;transl_table=11 CP098604.1 Genbank gene 2263225 2265903 . - . ID=gene-NDY25_09970;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=NDY25_09970 CP098604.1 Protein Homology CDS 2263225 2265903 . - 0 ID=cds-UUF04232.1;Parent=gene-NDY25_09970;Dbxref=NCBI_GP:UUF04232.1;Name=UUF04232.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374571.1;locus_tag=NDY25_09970;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=UUF04232.1;transl_table=11 CP098604.1 Genbank gene 2265903 2266877 . - . ID=gene-NDY25_09975;Name=NDY25_09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09975 CP098604.1 Protein Homology CDS 2265903 2266877 . - 0 ID=cds-UUF04233.1;Parent=gene-NDY25_09975;Dbxref=NCBI_GP:UUF04233.1;Name=UUF04233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377011.1;locus_tag=NDY25_09975;product=hypothetical protein;protein_id=UUF04233.1;transl_table=11 CP098604.1 Genbank gene 2267286 2268338 . + . ID=gene-NDY25_09980;Name=NDY25_09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09980 CP098604.1 Protein Homology CDS 2267286 2268338 . + 0 ID=cds-UUF04234.1;Parent=gene-NDY25_09980;Dbxref=NCBI_GP:UUF04234.1;Name=UUF04234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904027.1;locus_tag=NDY25_09980;product=LacI family transcriptional regulator;protein_id=UUF04234.1;transl_table=11 CP098604.1 Genbank gene 2268473 2271502 . + . ID=gene-NDY25_09985;Name=NDY25_09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09985 CP098604.1 Protein Homology CDS 2268473 2271502 . + 0 ID=cds-UUF04235.1;Parent=gene-NDY25_09985;Dbxref=NCBI_GP:UUF04235.1;Name=UUF04235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171975.1;locus_tag=NDY25_09985;product=TonB-dependent receptor;protein_id=UUF04235.1;transl_table=11 CP098604.1 Genbank gene 2271826 2274858 . + . ID=gene-NDY25_09990;Name=NDY25_09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09990 CP098604.1 Protein Homology CDS 2271826 2274858 . + 0 ID=cds-UUF04236.1;Parent=gene-NDY25_09990;Dbxref=NCBI_GP:UUF04236.1;Name=UUF04236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171731.1;locus_tag=NDY25_09990;product=TonB-dependent receptor;protein_id=UUF04236.1;transl_table=11 CP098604.1 Genbank gene 2274965 2276485 . + . ID=gene-NDY25_09995;Name=NDY25_09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_09995 CP098604.1 Protein Homology CDS 2274965 2276485 . + 0 ID=cds-UUF04237.1;Parent=gene-NDY25_09995;Dbxref=NCBI_GP:UUF04237.1;Name=UUF04237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439666.1;locus_tag=NDY25_09995;product=tryptophan 7-halogenase;protein_id=UUF04237.1;transl_table=11 CP098604.1 Genbank gene 2276724 2277455 . - . ID=gene-NDY25_10000;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=NDY25_10000 CP098604.1 Protein Homology CDS 2276724 2277455 . - 0 ID=cds-UUF04238.1;Parent=gene-NDY25_10000;Dbxref=NCBI_GP:UUF04238.1;Name=UUF04238.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505335.1;locus_tag=NDY25_10000;product=orotidine-5'-phosphate decarboxylase;protein_id=UUF04238.1;transl_table=11 CP098604.1 Genbank gene 2277452 2278414 . - . ID=gene-NDY25_10005;Name=NDY25_10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10005 CP098604.1 Protein Homology CDS 2277452 2278414 . - 0 ID=cds-UUF04609.1;Parent=gene-NDY25_10005;Dbxref=NCBI_GP:UUF04609.1;Name=UUF04609.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159717.1;locus_tag=NDY25_10005;product=5'-nucleotidase%2C lipoprotein e(P4) family;protein_id=UUF04609.1;transl_table=11 CP098604.1 Genbank gene 2278542 2279210 . + . ID=gene-NDY25_10010;Name=NDY25_10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10010 CP098604.1 Protein Homology CDS 2278542 2279210 . + 0 ID=cds-UUF04239.1;Parent=gene-NDY25_10010;Dbxref=NCBI_GP:UUF04239.1;Name=UUF04239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374589.1;locus_tag=NDY25_10010;product=DUF480 domain-containing protein;protein_id=UUF04239.1;transl_table=11 CP098604.1 Genbank gene 2279345 2280379 . - . ID=gene-NDY25_10015;Name=NDY25_10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10015 CP098604.1 Protein Homology CDS 2279345 2280379 . - 0 ID=cds-UUF04240.1;Parent=gene-NDY25_10015;Dbxref=NCBI_GP:UUF04240.1;Name=UUF04240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155171.1;locus_tag=NDY25_10015;product=DUF4272 domain-containing protein;protein_id=UUF04240.1;transl_table=11 CP098604.1 Genbank gene 2280457 2280532 . + . ID=gene-NDY25_10020;Name=NDY25_10020;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_10020 CP098604.1 cmsearch ncRNA 2280457 2280532 . + . ID=rna-NDY25_10020;Parent=gene-NDY25_10020;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10020;product=sX9 sRNA CP098604.1 cmsearch exon 2280457 2280532 . + . ID=exon-NDY25_10020-1;Parent=rna-NDY25_10020;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10020;product=sX9 sRNA CP098604.1 Genbank gene 2280576 2281124 . - . ID=gene-NDY25_10025;Name=NDY25_10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10025 CP098604.1 Protein Homology CDS 2280576 2281124 . - 0 ID=cds-UUF04241.1;Parent=gene-NDY25_10025;Dbxref=NCBI_GP:UUF04241.1;Name=UUF04241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452670.1;locus_tag=NDY25_10025;product=GNAT family N-acetyltransferase;protein_id=UUF04241.1;transl_table=11 CP098604.1 Genbank gene 2281187 2283163 . - . ID=gene-NDY25_10030;Name=NDY25_10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10030 CP098604.1 Protein Homology CDS 2281187 2283163 . - 0 ID=cds-UUF04242.1;Parent=gene-NDY25_10030;Dbxref=NCBI_GP:UUF04242.1;Name=UUF04242.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091509.1;locus_tag=NDY25_10030;product=UvrD-helicase domain-containing protein;protein_id=UUF04242.1;transl_table=11 CP098604.1 Genbank gene 2283278 2283913 . + . ID=gene-NDY25_10035;Name=NDY25_10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10035 CP098604.1 Protein Homology CDS 2283278 2283913 . + 0 ID=cds-UUF04243.1;Parent=gene-NDY25_10035;Dbxref=NCBI_GP:UUF04243.1;Name=UUF04243.1;Ontology_term=GO:0004797,GO:0005524;gbkey=CDS;go_function=thymidine kinase activity|0004797||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452668.1;locus_tag=NDY25_10035;product=thymidine kinase;protein_id=UUF04243.1;transl_table=11 CP098604.1 Genbank gene 2284379 2285623 . + . ID=gene-NDY25_10040;Name=NDY25_10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10040 CP098604.1 Protein Homology CDS 2284379 2285623 . + 0 ID=cds-UUF04244.1;Parent=gene-NDY25_10040;Dbxref=NCBI_GP:UUF04244.1;Name=UUF04244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155166.1;locus_tag=NDY25_10040;product=GAF domain-containing sensor histidine kinase;protein_id=UUF04244.1;transl_table=11 CP098604.1 Genbank gene 2285780 2287381 . - . ID=gene-NDY25_10045;Name=NDY25_10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10045 CP098604.1 Protein Homology CDS 2285780 2287381 . - 0 ID=cds-UUF04245.1;Parent=gene-NDY25_10045;Dbxref=NCBI_GP:UUF04245.1;Name=UUF04245.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091511.1;locus_tag=NDY25_10045;product=glucan biosynthesis protein D;protein_id=UUF04245.1;transl_table=11 CP098604.1 Genbank gene 2287449 2288552 . - . ID=gene-NDY25_10050;Name=NDY25_10050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10050 CP098604.1 Protein Homology CDS 2287449 2288552 . - 0 ID=cds-UUF04246.1;Parent=gene-NDY25_10050;Dbxref=NCBI_GP:UUF04246.1;Name=UUF04246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452665.1;locus_tag=NDY25_10050;product=DUF4380 domain-containing protein;protein_id=UUF04246.1;transl_table=11 CP098604.1 Genbank gene 2288737 2289552 . - . ID=gene-NDY25_10055;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=NDY25_10055 CP098604.1 Protein Homology CDS 2288737 2289552 . - 0 ID=cds-UUF04247.1;Parent=gene-NDY25_10055;Dbxref=NCBI_GP:UUF04247.1;Name=UUF04247.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439681.1;locus_tag=NDY25_10055;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=UUF04247.1;transl_table=11 CP098604.1 Genbank gene 2289855 2289969 . - . ID=gene-NDY25_10060;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=NDY25_10060 CP098604.1 cmsearch rRNA 2289855 2289969 . - . ID=rna-NDY25_10060;Parent=gene-NDY25_10060;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10060;product=5S ribosomal RNA CP098604.1 cmsearch exon 2289855 2289969 . - . ID=exon-NDY25_10060-1;Parent=rna-NDY25_10060;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10060;product=5S ribosomal RNA CP098604.1 Genbank gene 2290143 2293025 . - . ID=gene-NDY25_10065;Name=NDY25_10065;gbkey=Gene;gene_biotype=rRNA;locus_tag=NDY25_10065 CP098604.1 cmsearch rRNA 2290143 2293025 . - . ID=rna-NDY25_10065;Parent=gene-NDY25_10065;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10065;product=23S ribosomal RNA CP098604.1 cmsearch exon 2290143 2293025 . - . ID=exon-NDY25_10065-1;Parent=rna-NDY25_10065;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10065;product=23S ribosomal RNA CP098604.1 Genbank gene 2293254 2293330 . - . ID=gene-NDY25_10070;Name=NDY25_10070;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_10070 CP098604.1 tRNAscan-SE tRNA 2293254 2293330 . - . ID=rna-NDY25_10070;Parent=gene-NDY25_10070;anticodon=(pos:complement(2293294..2293296));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_10070;product=tRNA-Ile CP098604.1 tRNAscan-SE exon 2293254 2293330 . - . ID=exon-NDY25_10070-1;Parent=rna-NDY25_10070;anticodon=(pos:complement(2293294..2293296));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_10070;product=tRNA-Ile CP098604.1 Genbank gene 2293350 2293425 . - . ID=gene-NDY25_10075;Name=NDY25_10075;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_10075 CP098604.1 tRNAscan-SE tRNA 2293350 2293425 . - . ID=rna-NDY25_10075;Parent=gene-NDY25_10075;anticodon=(pos:complement(2293390..2293392));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_10075;product=tRNA-Ala CP098604.1 tRNAscan-SE exon 2293350 2293425 . - . ID=exon-NDY25_10075-1;Parent=rna-NDY25_10075;anticodon=(pos:complement(2293390..2293392));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_10075;product=tRNA-Ala CP098604.1 Genbank gene 2293518 2295064 . - . ID=gene-NDY25_10080;Name=NDY25_10080;gbkey=Gene;gene_biotype=rRNA;locus_tag=NDY25_10080 CP098604.1 cmsearch rRNA 2293518 2295064 . - . ID=rna-NDY25_10080;Parent=gene-NDY25_10080;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10080;product=16S ribosomal RNA CP098604.1 cmsearch exon 2293518 2295064 . - . ID=exon-NDY25_10080-1;Parent=rna-NDY25_10080;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10080;product=16S ribosomal RNA CP098604.1 Genbank gene 2295834 2297009 . + . ID=gene-NDY25_10085;Name=NDY25_10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10085 CP098604.1 Protein Homology CDS 2295834 2297009 . + 0 ID=cds-UUF04248.1;Parent=gene-NDY25_10085;Dbxref=NCBI_GP:UUF04248.1;Name=UUF04248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904738.1;locus_tag=NDY25_10085;product=benzoate/H(+) symporter BenE family transporter;protein_id=UUF04248.1;transl_table=11 CP098604.1 Genbank gene 2297148 2299052 . - . ID=gene-NDY25_10090;Name=NDY25_10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10090 CP098604.1 Protein Homology CDS 2297148 2299052 . - 0 ID=cds-UUF04249.1;Parent=gene-NDY25_10090;Dbxref=NCBI_GP:UUF04249.1;Name=UUF04249.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501448.1;locus_tag=NDY25_10090;product=GAF domain-containing protein;protein_id=UUF04249.1;transl_table=11 CP098604.1 Genbank gene 2299049 2299642 . - . ID=gene-NDY25_10095;Name=NDY25_10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10095 CP098604.1 Protein Homology CDS 2299049 2299642 . - 0 ID=cds-UUF04250.1;Parent=gene-NDY25_10095;Dbxref=NCBI_GP:UUF04250.1;Name=UUF04250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154757.1;locus_tag=NDY25_10095;product=biliverdin-producing heme oxygenase;protein_id=UUF04250.1;transl_table=11 CP098604.1 Genbank gene 2299742 2301013 . - . ID=gene-NDY25_10100;Name=NDY25_10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10100 CP098604.1 Protein Homology CDS 2299742 2301013 . - 0 ID=cds-UUF04251.1;Parent=gene-NDY25_10100;Dbxref=NCBI_GP:UUF04251.1;Name=UUF04251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448497.1;locus_tag=NDY25_10100;product=TCR/Tet family MFS transporter;protein_id=UUF04251.1;transl_table=11 CP098604.1 Genbank gene 2301398 2303560 . - . ID=gene-NDY25_10105;Name=NDY25_10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10105 CP098604.1 Protein Homology CDS 2301398 2303560 . - 0 ID=cds-UUF04252.1;Parent=gene-NDY25_10105;Dbxref=NCBI_GP:UUF04252.1;Name=UUF04252.1;Ontology_term=GO:0009253,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509591.1;locus_tag=NDY25_10105;product=lytic murein transglycosylase;protein_id=UUF04252.1;transl_table=11 CP098604.1 Genbank gene 2303872 2304078 . - . ID=gene-NDY25_10110;Name=NDY25_10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10110 CP098604.1 Protein Homology CDS 2303872 2304078 . - 0 ID=cds-UUF04253.1;Parent=gene-NDY25_10110;Dbxref=NCBI_GP:UUF04253.1;Name=UUF04253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154992.1;locus_tag=NDY25_10110;product=hypothetical protein;protein_id=UUF04253.1;transl_table=11 CP098604.1 Genbank gene 2304239 2304628 . - . ID=gene-NDY25_10115;Name=NDY25_10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10115 CP098604.1 Protein Homology CDS 2304239 2304628 . - 0 ID=cds-UUF04254.1;Parent=gene-NDY25_10115;Dbxref=NCBI_GP:UUF04254.1;Name=UUF04254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039223.1;locus_tag=NDY25_10115;product=YchJ family protein;protein_id=UUF04254.1;transl_table=11 CP098604.1 Genbank gene 2304743 2305516 . + . ID=gene-NDY25_10120;Name=NDY25_10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10120 CP098604.1 Protein Homology CDS 2304743 2305516 . + 0 ID=cds-UUF04255.1;Parent=gene-NDY25_10120;Dbxref=NCBI_GP:UUF04255.1;Name=UUF04255.1;Ontology_term=GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017909694.1;locus_tag=NDY25_10120;product=TSUP family transporter;protein_id=UUF04255.1;transl_table=11 CP098604.1 Genbank pseudogene 2305863 2306785 . + . ID=gene-NDY25_10125;Name=NDY25_10125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10125;pseudo=true CP098604.1 Protein Homology CDS 2305863 2306785 . + 0 ID=cds-NDY25_10125;Parent=gene-NDY25_10125;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012509957.1;locus_tag=NDY25_10125;product=IS110 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2307019 2309079 . - . ID=gene-NDY25_10130;Name=NDY25_10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10130 CP098604.1 Protein Homology CDS 2307019 2309079 . - 0 ID=cds-UUF04256.1;Parent=gene-NDY25_10130;Dbxref=NCBI_GP:UUF04256.1;Name=UUF04256.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270106.1;locus_tag=NDY25_10130;product=TonB-dependent siderophore receptor;protein_id=UUF04256.1;transl_table=11 CP098604.1 Genbank gene 2309327 2310508 . - . ID=gene-NDY25_10135;Name=NDY25_10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10135 CP098604.1 Protein Homology CDS 2309327 2310508 . - 0 ID=cds-UUF04257.1;Parent=gene-NDY25_10135;Dbxref=NCBI_GP:UUF04257.1;Name=UUF04257.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452464.1;locus_tag=NDY25_10135;product=DUF2220 family protein;protein_id=UUF04257.1;transl_table=11 CP098604.1 Genbank gene 2310513 2313905 . - . ID=gene-NDY25_10140;Name=NDY25_10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10140 CP098604.1 Protein Homology CDS 2310513 2313905 . - 0 ID=cds-UUF04258.1;Parent=gene-NDY25_10140;Dbxref=NCBI_GP:UUF04258.1;Name=UUF04258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452465.1;locus_tag=NDY25_10140;product=ATP-binding protein;protein_id=UUF04258.1;transl_table=11 CP098604.1 Genbank gene 2313970 2314674 . - . ID=gene-NDY25_10145;Name=NDY25_10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10145 CP098604.1 Protein Homology CDS 2313970 2314674 . - 0 ID=cds-UUF04259.1;Parent=gene-NDY25_10145;Dbxref=NCBI_GP:UUF04259.1;Name=UUF04259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003476901.1;locus_tag=NDY25_10145;product=DUF4194 domain-containing protein;protein_id=UUF04259.1;transl_table=11 CP098604.1 Genbank gene 2314661 2316130 . - . ID=gene-NDY25_10150;Name=NDY25_10150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10150 CP098604.1 Protein Homology CDS 2314661 2316130 . - 0 ID=cds-UUF04260.1;Parent=gene-NDY25_10150;Dbxref=NCBI_GP:UUF04260.1;Name=UUF04260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004141298.1;locus_tag=NDY25_10150;product=DUF3375 domain-containing protein;protein_id=UUF04260.1;transl_table=11 CP098604.1 Genbank gene 2316304 2316906 . - . ID=gene-NDY25_10155;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=NDY25_10155 CP098604.1 Protein Homology CDS 2316304 2316906 . - 0 ID=cds-UUF04261.1;Parent=gene-NDY25_10155;Dbxref=NCBI_GP:UUF04261.1;Name=UUF04261.1;Ontology_term=GO:0042559,GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=pteridine-containing compound biosynthetic process|0042559||IEA,tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158364.1;locus_tag=NDY25_10155;product=GTP cyclohydrolase I FolE;protein_id=UUF04261.1;transl_table=11 CP098604.1 Genbank gene 2317037 2317492 . + . ID=gene-NDY25_10160;Name=NDY25_10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10160 CP098604.1 Protein Homology CDS 2317037 2317492 . + 0 ID=cds-UUF04262.1;Parent=gene-NDY25_10160;Dbxref=NCBI_GP:UUF04262.1;Name=UUF04262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452469.1;locus_tag=NDY25_10160;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=UUF04262.1;transl_table=11 CP098604.1 Genbank gene 2317587 2317796 . + . ID=gene-NDY25_10165;Name=NDY25_10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10165 CP098604.1 Protein Homology CDS 2317587 2317796 . + 0 ID=cds-UUF04263.1;Parent=gene-NDY25_10165;Dbxref=NCBI_GP:UUF04263.1;Name=UUF04263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364281.1;locus_tag=NDY25_10165;product=DUF1656 domain-containing protein;protein_id=UUF04263.1;transl_table=11 CP098604.1 Genbank gene 2317793 2318716 . + . ID=gene-NDY25_10170;Name=NDY25_10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10170 CP098604.1 Protein Homology CDS 2317793 2318716 . + 0 ID=cds-UUF04264.1;Parent=gene-NDY25_10170;Dbxref=NCBI_GP:UUF04264.1;Name=UUF04264.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091523.1;locus_tag=NDY25_10170;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF04264.1;transl_table=11 CP098604.1 Genbank gene 2318713 2320173 . + . ID=gene-NDY25_10175;Name=NDY25_10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10175 CP098604.1 Protein Homology CDS 2318713 2320173 . + 0 ID=cds-UUF04265.1;Parent=gene-NDY25_10175;Dbxref=NCBI_GP:UUF04265.1;Name=UUF04265.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452472.1;locus_tag=NDY25_10175;product=efflux transporter outer membrane subunit;protein_id=UUF04265.1;transl_table=11 CP098604.1 Genbank gene 2320170 2322593 . + . ID=gene-NDY25_10180;Name=NDY25_10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10180 CP098604.1 Protein Homology CDS 2320170 2322593 . + 0 ID=cds-UUF04266.1;Parent=gene-NDY25_10180;Dbxref=NCBI_GP:UUF04266.1;Name=UUF04266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452473.1;locus_tag=NDY25_10180;product=FUSC family protein;protein_id=UUF04266.1;transl_table=11 CP098604.1 Genbank gene 2322799 2324160 . - . ID=gene-NDY25_10185;Name=NDY25_10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10185 CP098604.1 Protein Homology CDS 2322799 2324160 . - 0 ID=cds-UUF04267.1;Parent=gene-NDY25_10185;Dbxref=NCBI_GP:UUF04267.1;Name=UUF04267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301716.1;locus_tag=NDY25_10185;product=MFS transporter;protein_id=UUF04267.1;transl_table=11 CP098604.1 Genbank gene 2324319 2324543 . - . ID=gene-NDY25_10190;Name=NDY25_10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10190 CP098604.1 GeneMarkS-2+ CDS 2324319 2324543 . - 0 ID=cds-UUF04268.1;Parent=gene-NDY25_10190;Dbxref=NCBI_GP:UUF04268.1;Name=UUF04268.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10190;product=hypothetical protein;protein_id=UUF04268.1;transl_table=11 CP098604.1 Genbank gene 2324515 2325780 . + . ID=gene-NDY25_10195;Name=NDY25_10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10195 CP098604.1 Protein Homology CDS 2324515 2325780 . + 0 ID=cds-UUF04269.1;Parent=gene-NDY25_10195;Dbxref=NCBI_GP:UUF04269.1;Name=UUF04269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238145.1;locus_tag=NDY25_10195;product=phospholipase D-like domain-containing protein;protein_id=UUF04269.1;transl_table=11 CP098604.1 Genbank gene 2325849 2326355 . - . ID=gene-NDY25_10200;Name=NDY25_10200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10200 CP098604.1 Protein Homology CDS 2325849 2326355 . - 0 ID=cds-UUF04270.1;Parent=gene-NDY25_10200;Dbxref=NCBI_GP:UUF04270.1;Name=UUF04270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409841.1;locus_tag=NDY25_10200;product=hypothetical protein;protein_id=UUF04270.1;transl_table=11 CP098604.1 Genbank gene 2326636 2326842 . + . ID=gene-NDY25_10205;Name=NDY25_10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10205 CP098604.1 Protein Homology CDS 2326636 2326842 . + 0 ID=cds-UUF04271.1;Parent=gene-NDY25_10205;Dbxref=NCBI_GP:UUF04271.1;Name=UUF04271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364297.1;locus_tag=NDY25_10205;product=hypothetical protein;protein_id=UUF04271.1;transl_table=11 CP098604.1 Genbank gene 2326829 2327941 . + . ID=gene-NDY25_10210;Name=NDY25_10210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10210 CP098604.1 Protein Homology CDS 2326829 2327941 . + 0 ID=cds-UUF04272.1;Parent=gene-NDY25_10210;Dbxref=NCBI_GP:UUF04272.1;Name=UUF04272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158361.1;locus_tag=NDY25_10210;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=UUF04272.1;transl_table=11 CP098604.1 Genbank gene 2328119 2328679 . - . ID=gene-NDY25_10215;Name=NDY25_10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10215 CP098604.1 Protein Homology CDS 2328119 2328679 . - 0 ID=cds-UUF04273.1;Parent=gene-NDY25_10215;Dbxref=NCBI_GP:UUF04273.1;Name=UUF04273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448387.1;locus_tag=NDY25_10215;product=hypothetical protein;protein_id=UUF04273.1;transl_table=11 CP098604.1 Genbank gene 2329070 2329507 . + . ID=gene-NDY25_10220;Name=NDY25_10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10220 CP098604.1 Protein Homology CDS 2329070 2329507 . + 0 ID=cds-UUF04274.1;Parent=gene-NDY25_10220;Dbxref=NCBI_GP:UUF04274.1;Name=UUF04274.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF039755.1;locus_tag=NDY25_10220;product=DUF6393 family protein;protein_id=UUF04274.1;transl_table=11 CP098604.1 Genbank gene 2329720 2331297 . + . ID=gene-NDY25_10225;Name=NDY25_10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10225 CP098604.1 Protein Homology CDS 2329720 2331297 . + 0 ID=cds-UUF04275.1;Parent=gene-NDY25_10225;Dbxref=NCBI_GP:UUF04275.1;Name=UUF04275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902156.1;locus_tag=NDY25_10225;product=alpha/beta hydrolase-fold protein;protein_id=UUF04275.1;transl_table=11 CP098604.1 Genbank gene 2331380 2331781 . - . ID=gene-NDY25_10230;Name=NDY25_10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10230 CP098604.1 Protein Homology CDS 2331380 2331781 . - 0 ID=cds-UUF04276.1;Parent=gene-NDY25_10230;Dbxref=NCBI_GP:UUF04276.1;Name=UUF04276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004429277.1;locus_tag=NDY25_10230;product=DUF2384 domain-containing protein;protein_id=UUF04276.1;transl_table=11 CP098604.1 Genbank gene 2332087 2332542 . + . ID=gene-NDY25_10235;Name=NDY25_10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10235 CP098604.1 Protein Homology CDS 2332087 2332542 . + 0 ID=cds-UUF04277.1;Parent=gene-NDY25_10235;Dbxref=NCBI_GP:UUF04277.1;Name=UUF04277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509621.1;locus_tag=NDY25_10235;product=hypothetical protein;protein_id=UUF04277.1;transl_table=11 CP098604.1 Genbank gene 2332655 2333506 . + . ID=gene-NDY25_10240;Name=NDY25_10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10240 CP098604.1 Protein Homology CDS 2332655 2333506 . + 0 ID=cds-UUF04278.1;Parent=gene-NDY25_10240;Dbxref=NCBI_GP:UUF04278.1;Name=UUF04278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439697.1;locus_tag=NDY25_10240;product=hypothetical protein;protein_id=UUF04278.1;transl_table=11 CP098604.1 Genbank gene 2333536 2334867 . + . ID=gene-NDY25_10245;Name=NDY25_10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10245 CP098604.1 Protein Homology CDS 2333536 2334867 . + 0 ID=cds-UUF04279.1;Parent=gene-NDY25_10245;Dbxref=NCBI_GP:UUF04279.1;Name=UUF04279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902152.1;locus_tag=NDY25_10245;product=hypothetical protein;protein_id=UUF04279.1;transl_table=11 CP098604.1 Genbank gene 2334915 2335208 . - . ID=gene-NDY25_10250;Name=NDY25_10250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10250 CP098604.1 Protein Homology CDS 2334915 2335208 . - 0 ID=cds-UUF04280.1;Parent=gene-NDY25_10250;Dbxref=NCBI_GP:UUF04280.1;Name=UUF04280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509624.1;locus_tag=NDY25_10250;product=hypothetical protein;protein_id=UUF04280.1;transl_table=11 CP098604.1 Genbank gene 2335320 2335565 . + . ID=gene-NDY25_10255;Name=NDY25_10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10255 CP098604.1 Protein Homology CDS 2335320 2335565 . + 0 ID=cds-UUF04281.1;Parent=gene-NDY25_10255;Dbxref=NCBI_GP:UUF04281.1;Name=UUF04281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112444.1;locus_tag=NDY25_10255;product=helix-turn-helix domain-containing protein;protein_id=UUF04281.1;transl_table=11 CP098604.1 Genbank pseudogene 2335592 2336487 . - . ID=gene-NDY25_10260;Name=NDY25_10260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10260;pseudo=true CP098604.1 Protein Homology CDS 2335592 2336487 . - 0 ID=cds-NDY25_10260;Parent=gene-NDY25_10260;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039253.1;locus_tag=NDY25_10260;product=RluA family pseudouridine synthase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2336851 2337687 . + . ID=gene-NDY25_10265;Name=NDY25_10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10265 CP098604.1 Protein Homology CDS 2336851 2337687 . + 0 ID=cds-UUF04282.1;Parent=gene-NDY25_10265;Dbxref=NCBI_GP:UUF04282.1;Name=UUF04282.1;Ontology_term=GO:0009307,GO:0003677,GO:0004519;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112441.1;locus_tag=NDY25_10265;product=restriction endonuclease;protein_id=UUF04282.1;transl_table=11 CP098604.1 Genbank gene 2338452 2339558 . - . ID=gene-NDY25_10270;Name=NDY25_10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10270 CP098604.1 Protein Homology CDS 2338452 2339558 . - 0 ID=cds-UUF04283.1;Parent=gene-NDY25_10270;Dbxref=NCBI_GP:UUF04283.1;Name=UUF04283.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: protein motif:HMM:NF033516.0;locus_tag=NDY25_10270;product=IS3 family transposase;protein_id=UUF04283.1;transl_table=11 CP098604.1 Genbank gene 2340437 2341003 . + . ID=gene-NDY25_10275;Name=NDY25_10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10275 CP098604.1 Protein Homology CDS 2340437 2341003 . + 0 ID=cds-UUF04284.1;Parent=gene-NDY25_10275;Dbxref=NCBI_GP:UUF04284.1;Name=UUF04284.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF037408.2;locus_tag=NDY25_10275;product=hypothetical protein;protein_id=UUF04284.1;transl_table=11 CP098604.1 Genbank gene 2341244 2341597 . - . ID=gene-NDY25_10280;Name=NDY25_10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10280 CP098604.1 GeneMarkS-2+ CDS 2341244 2341597 . - 0 ID=cds-UUF04285.1;Parent=gene-NDY25_10280;Dbxref=NCBI_GP:UUF04285.1;Name=UUF04285.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10280;product=hypothetical protein;protein_id=UUF04285.1;transl_table=11 CP098604.1 Genbank gene 2342054 2342338 . - . ID=gene-NDY25_10285;Name=NDY25_10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10285 CP098604.1 GeneMarkS-2+ CDS 2342054 2342338 . - 0 ID=cds-UUF04286.1;Parent=gene-NDY25_10285;Dbxref=NCBI_GP:UUF04286.1;Name=UUF04286.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10285;product=late competence development ComFB family protein;protein_id=UUF04286.1;transl_table=11 CP098604.1 Genbank gene 2342571 2342903 . + . ID=gene-NDY25_10290;Name=NDY25_10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10290 CP098604.1 Protein Homology CDS 2342571 2342903 . + 0 ID=cds-UUF04287.1;Parent=gene-NDY25_10290;Dbxref=NCBI_GP:UUF04287.1;Name=UUF04287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302538.1;locus_tag=NDY25_10290;product=hypothetical protein;protein_id=UUF04287.1;transl_table=11 CP098604.1 Genbank gene 2343018 2344172 . - . ID=gene-NDY25_10295;Name=NDY25_10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10295 CP098604.1 Protein Homology CDS 2343018 2344172 . - 0 ID=cds-UUF04288.1;Parent=gene-NDY25_10295;Dbxref=NCBI_GP:UUF04288.1;Name=UUF04288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437269.1;locus_tag=NDY25_10295;product=hypothetical protein;protein_id=UUF04288.1;transl_table=11 CP098604.1 Genbank gene 2344207 2344614 . - . ID=gene-NDY25_10300;Name=NDY25_10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10300 CP098604.1 Protein Homology CDS 2344207 2344614 . - 0 ID=cds-UUF04289.1;Parent=gene-NDY25_10300;Dbxref=NCBI_GP:UUF04289.1;Name=UUF04289.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376368.1;locus_tag=NDY25_10300;product=hypothetical protein;protein_id=UUF04289.1;transl_table=11 CP098604.1 Genbank pseudogene 2345026 2345216 . + . ID=gene-NDY25_10305;Name=NDY25_10305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10305;pseudo=true CP098604.1 Protein Homology CDS 2345026 2345216 . + 0 ID=cds-NDY25_10305;Parent=gene-NDY25_10305;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509633.1;locus_tag=NDY25_10305;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2345490 2346308 . - . ID=gene-NDY25_10310;Name=NDY25_10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10310 CP098604.1 Protein Homology CDS 2345490 2346308 . - 0 ID=cds-UUF04610.1;Parent=gene-NDY25_10310;Dbxref=NCBI_GP:UUF04610.1;Name=UUF04610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158347.1;locus_tag=NDY25_10310;product=AraC family transcriptional regulator;protein_id=UUF04610.1;transl_table=11 CP098604.1 Genbank gene 2346527 2347270 . + . ID=gene-NDY25_10315;Name=NDY25_10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10315 CP098604.1 Protein Homology CDS 2346527 2347270 . + 0 ID=cds-UUF04290.1;Parent=gene-NDY25_10315;Dbxref=NCBI_GP:UUF04290.1;Name=UUF04290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158348.1;locus_tag=NDY25_10315;product=SDR family oxidoreductase;protein_id=UUF04290.1;transl_table=11 CP098604.1 Genbank gene 2347393 2347683 . - . ID=gene-NDY25_10320;Name=NDY25_10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10320 CP098604.1 Protein Homology CDS 2347393 2347683 . - 0 ID=cds-UUF04291.1;Parent=gene-NDY25_10320;Dbxref=NCBI_GP:UUF04291.1;Name=UUF04291.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156025.1;locus_tag=NDY25_10320;product=HigA family addiction module antitoxin;protein_id=UUF04291.1;transl_table=11 CP098604.1 Genbank gene 2347701 2347982 . - . ID=gene-NDY25_10325;Name=NDY25_10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10325 CP098604.1 Protein Homology CDS 2347701 2347982 . - 0 ID=cds-UUF04292.1;Parent=gene-NDY25_10325;Dbxref=NCBI_GP:UUF04292.1;Name=UUF04292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010952670.1;locus_tag=NDY25_10325;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=UUF04292.1;transl_table=11 CP098604.1 Genbank gene 2348196 2349251 . - . ID=gene-NDY25_10330;Name=NDY25_10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10330 CP098604.1 Protein Homology CDS 2348196 2349251 . - 0 ID=cds-UUF04293.1;Parent=gene-NDY25_10330;Dbxref=NCBI_GP:UUF04293.1;Name=UUF04293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449987.1;locus_tag=NDY25_10330;product=virulence RhuM family protein;protein_id=UUF04293.1;transl_table=11 CP098604.1 Genbank gene 2349390 2349677 . - . ID=gene-NDY25_10335;Name=NDY25_10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10335 CP098604.1 Protein Homology CDS 2349390 2349677 . - 0 ID=cds-UUF04294.1;Parent=gene-NDY25_10335;Dbxref=NCBI_GP:UUF04294.1;Name=UUF04294.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013601.2;locus_tag=NDY25_10335;product=ATP-dependent RecD-like DNA helicase;protein_id=UUF04294.1;transl_table=11 CP098604.1 Genbank gene 2349761 2351794 . - . ID=gene-NDY25_10340;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=NDY25_10340 CP098604.1 Protein Homology CDS 2349761 2351794 . - 0 ID=cds-UUF04295.1;Parent=gene-NDY25_10340;Dbxref=NCBI_GP:UUF04295.1;Name=UUF04295.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: protein motif:HMM:TIGR01447.1;locus_tag=NDY25_10340;product=exodeoxyribonuclease V subunit alpha;protein_id=UUF04295.1;transl_table=11 CP098604.1 Genbank gene 2351791 2355900 . - . ID=gene-NDY25_10345;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=NDY25_10345 CP098604.1 Protein Homology CDS 2351791 2355900 . - 0 ID=cds-UUF04296.1;Parent=gene-NDY25_10345;Dbxref=NCBI_GP:UUF04296.1;Name=UUF04296.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recB;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112939.1;locus_tag=NDY25_10345;product=exodeoxyribonuclease V subunit beta;protein_id=UUF04296.1;transl_table=11 CP098604.1 Genbank gene 2355897 2359301 . - . ID=gene-NDY25_10350;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=NDY25_10350 CP098604.1 Protein Homology CDS 2355897 2359301 . - 0 ID=cds-UUF04297.1;Parent=gene-NDY25_10350;Dbxref=NCBI_GP:UUF04297.1;Name=UUF04297.1;Ontology_term=GO:0006281,GO:0006310,GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364931.1;locus_tag=NDY25_10350;product=exodeoxyribonuclease V subunit gamma;protein_id=UUF04297.1;transl_table=11 CP098604.1 Genbank gene 2359456 2364678 . - . ID=gene-NDY25_10355;Name=NDY25_10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10355 CP098604.1 Protein Homology CDS 2359456 2364678 . - 0 ID=cds-UUF04611.1;Parent=gene-NDY25_10355;Dbxref=NCBI_GP:UUF04611.1;Name=UUF04611.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012439712.1;locus_tag=NDY25_10355;product=putative Ig domain-containing protein;protein_id=UUF04611.1;transl_table=11 CP098604.1 Genbank gene 2364957 2365496 . + . ID=gene-NDY25_10360;Name=NDY25_10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10360 CP098604.1 Protein Homology CDS 2364957 2365496 . + 0 ID=cds-UUF04298.1;Parent=gene-NDY25_10360;Dbxref=NCBI_GP:UUF04298.1;Name=UUF04298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302472.1;locus_tag=NDY25_10360;product=tail fiber protein;protein_id=UUF04298.1;transl_table=11 CP098604.1 Genbank gene 2365568 2366095 . + . ID=gene-NDY25_10365;Name=NDY25_10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10365 CP098604.1 Protein Homology CDS 2365568 2366095 . + 0 ID=cds-UUF04299.1;Parent=gene-NDY25_10365;Dbxref=NCBI_GP:UUF04299.1;Name=UUF04299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341084.1;locus_tag=NDY25_10365;product=tail fiber protein;protein_id=UUF04299.1;transl_table=11 CP098604.1 Genbank gene 2366158 2366694 . + . ID=gene-NDY25_10370;Name=NDY25_10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10370 CP098604.1 Protein Homology CDS 2366158 2366694 . + 0 ID=cds-UUF04300.1;Parent=gene-NDY25_10370;Dbxref=NCBI_GP:UUF04300.1;Name=UUF04300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364922.1;locus_tag=NDY25_10370;product=tail fiber protein;protein_id=UUF04300.1;transl_table=11 CP098604.1 Genbank gene 2366709 2367272 . + . ID=gene-NDY25_10375;Name=NDY25_10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10375 CP098604.1 Protein Homology CDS 2366709 2367272 . + 0 ID=cds-UUF04301.1;Parent=gene-NDY25_10375;Dbxref=NCBI_GP:UUF04301.1;Name=UUF04301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156017.1;locus_tag=NDY25_10375;product=GNAT family N-acetyltransferase;protein_id=UUF04301.1;transl_table=11 CP098604.1 Genbank gene 2367265 2367552 . - . ID=gene-NDY25_10380;Name=NDY25_10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10380 CP098604.1 Protein Homology CDS 2367265 2367552 . - 0 ID=cds-UUF04302.1;Parent=gene-NDY25_10380;Dbxref=NCBI_GP:UUF04302.1;Name=UUF04302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364918.1;locus_tag=NDY25_10380;product=hypothetical protein;protein_id=UUF04302.1;transl_table=11 CP098604.1 Genbank gene 2367788 2368582 . + . ID=gene-NDY25_10385;Name=NDY25_10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10385 CP098604.1 Protein Homology CDS 2367788 2368582 . + 0 ID=cds-UUF04303.1;Parent=gene-NDY25_10385;Dbxref=NCBI_GP:UUF04303.1;Name=UUF04303.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451570.1;locus_tag=NDY25_10385;product=ATP-binding cassette domain-containing protein;protein_id=UUF04303.1;transl_table=11 CP098604.1 Genbank gene 2368582 2369331 . + . ID=gene-NDY25_10390;Name=NDY25_10390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10390 CP098604.1 Protein Homology CDS 2368582 2369331 . + 0 ID=cds-UUF04304.1;Parent=gene-NDY25_10390;Dbxref=NCBI_GP:UUF04304.1;Name=UUF04304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302478.1;locus_tag=NDY25_10390;product=MlaE family lipid ABC transporter permease subunit;protein_id=UUF04304.1;transl_table=11 CP098604.1 Genbank gene 2369343 2369894 . + . ID=gene-NDY25_10395;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=NDY25_10395 CP098604.1 Protein Homology CDS 2369343 2369894 . + 0 ID=cds-UUF04305.1;Parent=gene-NDY25_10395;Dbxref=NCBI_GP:UUF04305.1;Name=UUF04305.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451568.1;locus_tag=NDY25_10395;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=UUF04305.1;transl_table=11 CP098604.1 Genbank gene 2369891 2370553 . + . ID=gene-NDY25_10400;Name=NDY25_10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10400 CP098604.1 Protein Homology CDS 2369891 2370553 . + 0 ID=cds-UUF04306.1;Parent=gene-NDY25_10400;Dbxref=NCBI_GP:UUF04306.1;Name=UUF04306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002803917.1;locus_tag=NDY25_10400;product=ABC transporter substrate-binding protein;protein_id=UUF04306.1;transl_table=11 CP098604.1 Genbank gene 2370543 2370836 . + . ID=gene-NDY25_10405;Name=NDY25_10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10405 CP098604.1 Protein Homology CDS 2370543 2370836 . + 0 ID=cds-UUF04307.1;Parent=gene-NDY25_10405;Dbxref=NCBI_GP:UUF04307.1;Name=UUF04307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364907.1;locus_tag=NDY25_10405;product=STAS domain-containing protein;protein_id=UUF04307.1;transl_table=11 CP098604.1 Genbank gene 2370847 2371908 . + . ID=gene-NDY25_10410;Name=NDY25_10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10410 CP098604.1 Protein Homology CDS 2370847 2371908 . + 0 ID=cds-UUF04308.1;Parent=gene-NDY25_10410;Dbxref=NCBI_GP:UUF04308.1;Name=UUF04308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163758.1;locus_tag=NDY25_10410;product=VacJ family lipoprotein;protein_id=UUF04308.1;transl_table=11 CP098604.1 Genbank gene 2372212 2373165 . + . ID=gene-NDY25_10415;Name=NDY25_10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10415 CP098604.1 Protein Homology CDS 2372212 2373165 . + 0 ID=cds-UUF04309.1;Parent=gene-NDY25_10415;Dbxref=NCBI_GP:UUF04309.1;Name=UUF04309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451564.1;locus_tag=NDY25_10415;product=AraC family transcriptional regulator;protein_id=UUF04309.1;transl_table=11 CP098604.1 Genbank gene 2373418 2375031 . + . ID=gene-NDY25_10420;Name=NDY25_10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10420 CP098604.1 Protein Homology CDS 2373418 2375031 . + 0 ID=cds-UUF04310.1;Parent=gene-NDY25_10420;Dbxref=NCBI_GP:UUF04310.1;Name=UUF04310.1;Ontology_term=GO:0016614,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451563.1;locus_tag=NDY25_10420;product=GMC family oxidoreductase N-terminal domain-containing protein;protein_id=UUF04310.1;transl_table=11 CP098604.1 Genbank gene 2375186 2375605 . - . ID=gene-NDY25_10425;Name=NDY25_10425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10425 CP098604.1 Protein Homology CDS 2375186 2375605 . - 0 ID=cds-UUF04311.1;Parent=gene-NDY25_10425;Dbxref=NCBI_GP:UUF04311.1;Name=UUF04311.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018684.2;locus_tag=NDY25_10425;product=DUF1311 domain-containing protein;protein_id=UUF04311.1;transl_table=11 CP098604.1 Genbank gene 2375716 2376264 . - . ID=gene-NDY25_10430;Name=NDY25_10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10430 CP098604.1 Protein Homology CDS 2375716 2376264 . - 0 ID=cds-UUF04312.1;Parent=gene-NDY25_10430;Dbxref=NCBI_GP:UUF04312.1;Name=UUF04312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902115.1;locus_tag=NDY25_10430;product=glutathione peroxidase;protein_id=UUF04312.1;transl_table=11 CP098604.1 Genbank gene 2376482 2376862 . - . ID=gene-NDY25_10435;Name=NDY25_10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10435 CP098604.1 Protein Homology CDS 2376482 2376862 . - 0 ID=cds-UUF04313.1;Parent=gene-NDY25_10435;Dbxref=NCBI_GP:UUF04313.1;Name=UUF04313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349194.1;locus_tag=NDY25_10435;product=hypothetical protein;protein_id=UUF04313.1;transl_table=11 CP098604.1 Genbank gene 2377105 2378691 . - . ID=gene-NDY25_10440;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=NDY25_10440 CP098604.1 Protein Homology CDS 2377105 2378691 . - 0 ID=cds-UUF04314.1;Parent=gene-NDY25_10440;Dbxref=NCBI_GP:UUF04314.1;Name=UUF04314.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039276.1;locus_tag=NDY25_10440;product=DNA recombination protein RmuC;protein_id=UUF04314.1;transl_table=11 CP098604.1 Genbank gene 2379047 2379670 . + . ID=gene-NDY25_10445;Name=NDY25_10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10445 CP098604.1 Protein Homology CDS 2379047 2379670 . + 0 ID=cds-UUF04315.1;Parent=gene-NDY25_10445;Dbxref=NCBI_GP:UUF04315.1;Name=UUF04315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012481678.1;locus_tag=NDY25_10445;product=glutathione S-transferase;protein_id=UUF04315.1;transl_table=11 CP098604.1 Genbank gene 2380005 2381420 . + . ID=gene-NDY25_10450;Name=NDY25_10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10450 CP098604.1 Protein Homology CDS 2380005 2381420 . + 0 ID=cds-UUF04316.1;Parent=gene-NDY25_10450;Dbxref=NCBI_GP:UUF04316.1;Name=UUF04316.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482277.1;locus_tag=NDY25_10450;product=amino acid permease;protein_id=UUF04316.1;transl_table=11 CP098604.1 Genbank gene 2381771 2384248 . - . ID=gene-NDY25_10455;Name=NDY25_10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10455 CP098604.1 Protein Homology CDS 2381771 2384248 . - 0 ID=cds-UUF04317.1;Parent=gene-NDY25_10455;Dbxref=NCBI_GP:UUF04317.1;Name=UUF04317.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114893.1;locus_tag=NDY25_10455;product=GH92 family glycosyl hydrolase;protein_id=UUF04317.1;transl_table=11 CP098604.1 Genbank gene 2384651 2386009 . - . ID=gene-NDY25_10460;Name=NDY25_10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10460 CP098604.1 Protein Homology CDS 2384651 2386009 . - 0 ID=cds-UUF04318.1;Parent=gene-NDY25_10460;Dbxref=NCBI_GP:UUF04318.1;Name=UUF04318.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017231.2;locus_tag=NDY25_10460;product=hypothetical protein;protein_id=UUF04318.1;transl_table=11 CP098604.1 Genbank pseudogene 2386464 2389317 . - . ID=gene-NDY25_10465;Name=NDY25_10465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10465;pseudo=true CP098604.1 Protein Homology CDS 2386464 2389317 . - 0 ID=cds-NDY25_10465;Parent=gene-NDY25_10465;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091570.1;locus_tag=NDY25_10465;product=TonB-dependent receptor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2389884 2390276 . - . ID=gene-NDY25_10470;Name=NDY25_10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10470 CP098604.1 Protein Homology CDS 2389884 2390276 . - 0 ID=cds-UUF04319.1;Parent=gene-NDY25_10470;Dbxref=NCBI_GP:UUF04319.1;Name=UUF04319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902101.1;locus_tag=NDY25_10470;product=DUF2628 domain-containing protein;protein_id=UUF04319.1;transl_table=11 CP098604.1 Genbank gene 2390415 2392163 . - . ID=gene-NDY25_10475;Name=NDY25_10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10475 CP098604.1 Protein Homology CDS 2390415 2392163 . - 0 ID=cds-UUF04320.1;Parent=gene-NDY25_10475;Dbxref=NCBI_GP:UUF04320.1;Name=UUF04320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848720.1;locus_tag=NDY25_10475;product=diguanylate cyclase;protein_id=UUF04320.1;transl_table=11 CP098604.1 Genbank gene 2392303 2393493 . - . ID=gene-NDY25_10480;Name=NDY25_10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10480 CP098604.1 Protein Homology CDS 2392303 2393493 . - 0 ID=cds-UUF04321.1;Parent=gene-NDY25_10480;Dbxref=NCBI_GP:UUF04321.1;Name=UUF04321.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453042.1;locus_tag=NDY25_10480;product=helix-turn-helix domain-containing protein;protein_id=UUF04321.1;transl_table=11 CP098604.1 Genbank gene 2393854 2395023 . - . ID=gene-NDY25_10485;Name=NDY25_10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10485 CP098604.1 Protein Homology CDS 2393854 2395023 . - 0 ID=cds-UUF04322.1;Parent=gene-NDY25_10485;Dbxref=NCBI_GP:UUF04322.1;Name=UUF04322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453043.1;locus_tag=NDY25_10485;product=glycerate kinase;protein_id=UUF04322.1;transl_table=11 CP098604.1 Genbank gene 2395049 2396359 . - . ID=gene-NDY25_10490;Name=NDY25_10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10490 CP098604.1 Protein Homology CDS 2395049 2396359 . - 0 ID=cds-UUF04323.1;Parent=gene-NDY25_10490;Dbxref=NCBI_GP:UUF04323.1;Name=UUF04323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160000.1;locus_tag=NDY25_10490;product=MFS transporter;protein_id=UUF04323.1;transl_table=11 CP098604.1 Genbank gene 2396816 2398072 . - . ID=gene-NDY25_10495;Name=NDY25_10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10495 CP098604.1 Protein Homology CDS 2396816 2398072 . - 0 ID=cds-UUF04324.1;Parent=gene-NDY25_10495;Dbxref=NCBI_GP:UUF04324.1;Name=UUF04324.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162756.1;locus_tag=NDY25_10495;product=dipeptidase;protein_id=UUF04324.1;transl_table=11 CP098604.1 Genbank gene 2398211 2398687 . - . ID=gene-NDY25_10500;Name=NDY25_10500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10500 CP098604.1 Protein Homology CDS 2398211 2398687 . - 0 ID=cds-UUF04325.1;Parent=gene-NDY25_10500;Dbxref=NCBI_GP:UUF04325.1;Name=UUF04325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453047.1;locus_tag=NDY25_10500;product=hypothetical protein;protein_id=UUF04325.1;transl_table=11 CP098604.1 Genbank gene 2398770 2400905 . - . ID=gene-NDY25_10505;Name=NDY25_10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10505 CP098604.1 Protein Homology CDS 2398770 2400905 . - 0 ID=cds-UUF04326.1;Parent=gene-NDY25_10505;Dbxref=NCBI_GP:UUF04326.1;Name=UUF04326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453048.1;locus_tag=NDY25_10505;product=acylase;protein_id=UUF04326.1;transl_table=11 CP098604.1 Genbank gene 2400917 2403685 . - . ID=gene-NDY25_10510;Name=NDY25_10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10510 CP098604.1 Protein Homology CDS 2400917 2403685 . - 0 ID=cds-UUF04327.1;Parent=gene-NDY25_10510;Dbxref=NCBI_GP:UUF04327.1;Name=UUF04327.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012801.2;locus_tag=NDY25_10510;product=TonB-dependent receptor;protein_id=UUF04327.1;transl_table=11 CP098604.1 Genbank gene 2403833 2404816 . - . ID=gene-NDY25_10515;Name=NDY25_10515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10515 CP098604.1 Protein Homology CDS 2403833 2404816 . - 0 ID=cds-UUF04328.1;Parent=gene-NDY25_10515;Dbxref=NCBI_GP:UUF04328.1;Name=UUF04328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453052.1;locus_tag=NDY25_10515;product=FecR domain-containing protein;protein_id=UUF04328.1;transl_table=11 CP098604.1 Genbank gene 2404819 2405406 . - . ID=gene-NDY25_10520;Name=NDY25_10520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10520 CP098604.1 Protein Homology CDS 2404819 2405406 . - 0 ID=cds-UUF04329.1;Parent=gene-NDY25_10520;Dbxref=NCBI_GP:UUF04329.1;Name=UUF04329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901858.1;locus_tag=NDY25_10520;product=RNA polymerase sigma factor;protein_id=UUF04329.1;transl_table=11 CP098604.1 Genbank gene 2405782 2405922 . + . ID=gene-NDY25_10525;Name=NDY25_10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10525 CP098604.1 GeneMarkS-2+ CDS 2405782 2405922 . + 0 ID=cds-UUF04330.1;Parent=gene-NDY25_10525;Dbxref=NCBI_GP:UUF04330.1;Name=UUF04330.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10525;product=hypothetical protein;protein_id=UUF04330.1;transl_table=11 CP098604.1 Genbank gene 2406012 2406329 . - . ID=gene-NDY25_10530;Name=NDY25_10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10530 CP098604.1 Protein Homology CDS 2406012 2406329 . - 0 ID=cds-UUF04331.1;Parent=gene-NDY25_10530;Dbxref=NCBI_GP:UUF04331.1;Name=UUF04331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039291.1;locus_tag=NDY25_10530;product=hypothetical protein;protein_id=UUF04331.1;transl_table=11 CP098604.1 Genbank gene 2406369 2406445 . - . ID=gene-NDY25_10535;Name=NDY25_10535;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_10535 CP098604.1 cmsearch ncRNA 2406369 2406445 . - . ID=rna-NDY25_10535;Parent=gene-NDY25_10535;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10535;product=sX9 sRNA CP098604.1 cmsearch exon 2406369 2406445 . - . ID=exon-NDY25_10535-1;Parent=rna-NDY25_10535;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10535;product=sX9 sRNA CP098604.1 Genbank gene 2406518 2407684 . - . ID=gene-NDY25_10540;Name=NDY25_10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10540 CP098604.1 Protein Homology CDS 2406518 2407684 . - 0 ID=cds-UUF04332.1;Parent=gene-NDY25_10540;Dbxref=NCBI_GP:UUF04332.1;Name=UUF04332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155989.1;locus_tag=NDY25_10540;product=class I SAM-dependent rRNA methyltransferase;protein_id=UUF04332.1;transl_table=11 CP098604.1 Genbank gene 2408003 2408959 . + . ID=gene-NDY25_10545;Name=NDY25_10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10545 CP098604.1 Protein Homology CDS 2408003 2408959 . + 0 ID=cds-UUF04333.1;Parent=gene-NDY25_10545;Dbxref=NCBI_GP:UUF04333.1;Name=UUF04333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912402.1;locus_tag=NDY25_10545;product=TerC family protein;protein_id=UUF04333.1;transl_table=11 CP098604.1 Genbank gene 2409807 2410595 . + . ID=gene-NDY25_10550;Name=NDY25_10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10550 CP098604.1 Protein Homology CDS 2409807 2410595 . + 0 ID=cds-UUF04334.1;Parent=gene-NDY25_10550;Dbxref=NCBI_GP:UUF04334.1;Name=UUF04334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482239.1;locus_tag=NDY25_10550;product=rhomboid family intramembrane serine protease;protein_id=UUF04334.1;transl_table=11 CP098604.1 Genbank gene 2410675 2411775 . - . ID=gene-NDY25_10555;Name=NDY25_10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10555 CP098604.1 Protein Homology CDS 2410675 2411775 . - 0 ID=cds-UUF04335.1;Parent=gene-NDY25_10555;Dbxref=NCBI_GP:UUF04335.1;Name=UUF04335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155987.1;locus_tag=NDY25_10555;product=glycerophosphodiester phosphodiesterase;protein_id=UUF04335.1;transl_table=11 CP098604.1 Genbank gene 2411853 2411929 . + . ID=gene-NDY25_10560;Name=NDY25_10560;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_10560 CP098604.1 cmsearch ncRNA 2411853 2411929 . + . ID=rna-NDY25_10560;Parent=gene-NDY25_10560;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10560;product=sX9 sRNA CP098604.1 cmsearch exon 2411853 2411929 . + . ID=exon-NDY25_10560-1;Parent=rna-NDY25_10560;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10560;product=sX9 sRNA CP098604.1 Genbank gene 2412027 2414327 . - . ID=gene-NDY25_10565;Name=NDY25_10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10565 CP098604.1 Protein Homology CDS 2412027 2414327 . - 0 ID=cds-UUF04612.1;Parent=gene-NDY25_10565;Dbxref=NCBI_GP:UUF04612.1;Name=UUF04612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160003.1;locus_tag=NDY25_10565;product=TonB-dependent receptor;protein_id=UUF04612.1;transl_table=11 CP098604.1 Genbank gene 2414522 2415379 . + . ID=gene-NDY25_10570;Name=NDY25_10570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10570 CP098604.1 Protein Homology CDS 2414522 2415379 . + 0 ID=cds-UUF04336.1;Parent=gene-NDY25_10570;Dbxref=NCBI_GP:UUF04336.1;Name=UUF04336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971341.1;locus_tag=NDY25_10570;product=phosphatase PAP2 family protein;protein_id=UUF04336.1;transl_table=11 CP098604.1 Genbank gene 2416092 2418842 . + . ID=gene-NDY25_10575;Name=NDY25_10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10575 CP098604.1 Protein Homology CDS 2416092 2418842 . + 0 ID=cds-UUF04337.1;Parent=gene-NDY25_10575;Dbxref=NCBI_GP:UUF04337.1;Name=UUF04337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039298.1;locus_tag=NDY25_10575;product=TonB-dependent receptor plug domain-containing protein;protein_id=UUF04337.1;transl_table=11 CP098604.1 Genbank gene 2418839 2419600 . - . ID=gene-NDY25_10580;Name=NDY25_10580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10580 CP098604.1 Protein Homology CDS 2418839 2419600 . - 0 ID=cds-UUF04613.1;Parent=gene-NDY25_10580;Dbxref=NCBI_GP:UUF04613.1;Name=UUF04613.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558164.1;locus_tag=NDY25_10580;product=IS5 family transposase;protein_id=UUF04613.1;transl_table=11 CP098604.1 Genbank gene 2419672 2419950 . + . ID=gene-NDY25_10585;Name=NDY25_10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10585 CP098604.1 GeneMarkS-2+ CDS 2419672 2419950 . + 0 ID=cds-UUF04338.1;Parent=gene-NDY25_10585;Dbxref=NCBI_GP:UUF04338.1;Name=UUF04338.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10585;product=TonB-dependent receptor;protein_id=UUF04338.1;transl_table=11 CP098604.1 Genbank gene 2420053 2421393 . - . ID=gene-NDY25_10590;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=NDY25_10590 CP098604.1 Protein Homology CDS 2420053 2421393 . - 0 ID=cds-UUF04339.1;Parent=gene-NDY25_10590;Dbxref=NCBI_GP:UUF04339.1;Name=UUF04339.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011349216.1;locus_tag=NDY25_10590;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=UUF04339.1;transl_table=11 CP098604.1 Genbank gene 2421478 2423199 . - . ID=gene-NDY25_10595;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=NDY25_10595 CP098604.1 Protein Homology CDS 2421478 2423199 . - 0 ID=cds-UUF04340.1;Parent=gene-NDY25_10595;Dbxref=NCBI_GP:UUF04340.1;Name=UUF04340.1;Ontology_term=GO:0032977,GO:0016021;gbkey=CDS;gene=yidC;go_component=integral component of membrane|0016021||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482225.1;locus_tag=NDY25_10595;product=membrane protein insertase YidC;protein_id=UUF04340.1;transl_table=11 CP098604.1 Genbank gene 2423215 2423661 . - . ID=gene-NDY25_10600;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=NDY25_10600 CP098604.1 Protein Homology CDS 2423215 2423661 . - 0 ID=cds-UUF04341.1;Parent=gene-NDY25_10600;Dbxref=NCBI_GP:UUF04341.1;Name=UUF04341.1;Ontology_term=GO:0006396,GO:0004526;gbkey=CDS;gene=rnpA;go_function=ribonuclease P activity|0004526||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039302.1;locus_tag=NDY25_10600;product=ribonuclease P protein component;protein_id=UUF04341.1;transl_table=11 CP098604.1 Genbank gene 2423700 2423840 . - . ID=gene-NDY25_10605;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=NDY25_10605 CP098604.1 Protein Homology CDS 2423700 2423840 . - 0 ID=cds-UUF04342.1;Parent=gene-NDY25_10605;Dbxref=NCBI_GP:UUF04342.1;Name=UUF04342.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006404565.1;locus_tag=NDY25_10605;product=50S ribosomal protein L34;protein_id=UUF04342.1;transl_table=11 CP098604.1 Genbank gene 2424083 2425411 . + . ID=gene-NDY25_10610;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=NDY25_10610 CP098604.1 Protein Homology CDS 2424083 2425411 . + 0 ID=cds-UUF04343.1;Parent=gene-NDY25_10610;Dbxref=NCBI_GP:UUF04343.1;Name=UUF04343.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050021.1;locus_tag=NDY25_10610;product=chromosomal replication initiator protein DnaA;protein_id=UUF04343.1;transl_table=11 CP098604.1 Genbank gene 2425689 2426789 . + . ID=gene-NDY25_10615;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=NDY25_10615 CP098604.1 Protein Homology CDS 2425689 2426789 . + 0 ID=cds-UUF04344.1;Parent=gene-NDY25_10615;Dbxref=NCBI_GP:UUF04344.1;Name=UUF04344.1;Ontology_term=GO:0006260,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451791.1;locus_tag=NDY25_10615;product=DNA polymerase III subunit beta;protein_id=UUF04344.1;transl_table=11 CP098604.1 Genbank gene 2427513 2428619 . + . ID=gene-NDY25_10620;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=NDY25_10620 CP098604.1 Protein Homology CDS 2427513 2428619 . + 0 ID=cds-UUF04345.1;Parent=gene-NDY25_10620;Dbxref=NCBI_GP:UUF04345.1;Name=UUF04345.1;Ontology_term=GO:0006281,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376403.1;locus_tag=NDY25_10620;product=DNA replication/repair protein RecF;protein_id=UUF04345.1;transl_table=11 CP098604.1 Genbank gene 2428734 2431178 . + . ID=gene-NDY25_10625;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=NDY25_10625 CP098604.1 Protein Homology CDS 2428734 2431178 . + 0 ID=cds-UUF04346.1;Parent=gene-NDY25_10625;Dbxref=NCBI_GP:UUF04346.1;Name=UUF04346.1;Ontology_term=GO:0006265,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrB;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912438.1;locus_tag=NDY25_10625;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=UUF04346.1;transl_table=11 CP098604.1 Genbank gene 2431248 2432084 . + . ID=gene-NDY25_10630;Name=NDY25_10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10630 CP098604.1 Protein Homology CDS 2431248 2432084 . + 0 ID=cds-UUF04347.1;Parent=gene-NDY25_10630;Dbxref=NCBI_GP:UUF04347.1;Name=UUF04347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364801.1;locus_tag=NDY25_10630;product=CPBP family intramembrane metalloprotease;protein_id=UUF04347.1;transl_table=11 CP098604.1 Genbank gene 2432147 2432953 . + . ID=gene-NDY25_10635;Name=NDY25_10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10635 CP098604.1 Protein Homology CDS 2432147 2432953 . + 0 ID=cds-UUF04348.1;Parent=gene-NDY25_10635;Dbxref=NCBI_GP:UUF04348.1;Name=UUF04348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901838.1;locus_tag=NDY25_10635;product=M48 family metallopeptidase;protein_id=UUF04348.1;transl_table=11 CP098604.1 Genbank gene 2433106 2434302 . + . ID=gene-NDY25_10640;Name=NDY25_10640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10640 CP098604.1 Protein Homology CDS 2433106 2434302 . + 0 ID=cds-UUF04349.1;Parent=gene-NDY25_10640;Dbxref=NCBI_GP:UUF04349.1;Name=UUF04349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376399.1;locus_tag=NDY25_10640;product=tetratricopeptide repeat protein;protein_id=UUF04349.1;transl_table=11 CP098604.1 Genbank gene 2434570 2435127 . + . ID=gene-NDY25_10645;Name=NDY25_10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10645 CP098604.1 Protein Homology CDS 2434570 2435127 . + 0 ID=cds-UUF04614.1;Parent=gene-NDY25_10645;Dbxref=NCBI_GP:UUF04614.1;Name=UUF04614.1;Ontology_term=GO:0006810,GO:0015291;gbkey=CDS;go_function=secondary active transmembrane transporter activity|0015291||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505935.1;locus_tag=NDY25_10645;product=TonB family protein;protein_id=UUF04614.1;transl_table=11 CP098604.1 Genbank gene 2435212 2435976 . + . ID=gene-NDY25_10650;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=NDY25_10650 CP098604.1 Protein Homology CDS 2435212 2435976 . + 0 ID=cds-UUF04350.1;Parent=gene-NDY25_10650;Dbxref=NCBI_GP:UUF04350.1;Name=UUF04350.1;gbkey=CDS;gene=exbB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002805928.1;locus_tag=NDY25_10650;product=TonB-system energizer ExbB;protein_id=UUF04350.1;transl_table=11 CP098604.1 Genbank gene 2436022 2436444 . + . ID=gene-NDY25_10655;Name=NDY25_10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10655 CP098604.1 Protein Homology CDS 2436022 2436444 . + 0 ID=cds-UUF04351.1;Parent=gene-NDY25_10655;Dbxref=NCBI_GP:UUF04351.1;Name=UUF04351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912447.1;locus_tag=NDY25_10655;product=biopolymer transporter ExbD;protein_id=UUF04351.1;transl_table=11 CP098604.1 Genbank gene 2436448 2436858 . + . ID=gene-NDY25_10660;Name=NDY25_10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10660 CP098604.1 Protein Homology CDS 2436448 2436858 . + 0 ID=cds-UUF04352.1;Parent=gene-NDY25_10660;Dbxref=NCBI_GP:UUF04352.1;Name=UUF04352.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035269.1;locus_tag=NDY25_10660;product=biopolymer transporter ExbD;protein_id=UUF04352.1;transl_table=11 CP098604.1 Genbank pseudogene 2436993 2437082 . + . ID=gene-NDY25_10665;Name=NDY25_10665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10665;pseudo=true CP098604.1 Protein Homology CDS 2436993 2437082 . + 0 ID=cds-NDY25_10665;Parent=gene-NDY25_10665;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035269.1;locus_tag=NDY25_10665;product=biopolymer transporter ExbD;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2437345 2438112 . - . ID=gene-NDY25_10670;Name=NDY25_10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10670 CP098604.1 Protein Homology CDS 2437345 2438112 . - 0 ID=cds-UUF04353.1;Parent=gene-NDY25_10670;Dbxref=NCBI_GP:UUF04353.1;Name=UUF04353.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451800.1;locus_tag=NDY25_10670;product=pyridoxine 5'-phosphate synthase;protein_id=UUF04353.1;transl_table=11 CP098604.1 Genbank gene 2438123 2438392 . - . ID=gene-NDY25_10675;Name=NDY25_10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10675 CP098604.1 Protein Homology CDS 2438123 2438392 . - 0 ID=cds-UUF04354.1;Parent=gene-NDY25_10675;Dbxref=NCBI_GP:UUF04354.1;Name=UUF04354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155969.1;locus_tag=NDY25_10675;product=hypothetical protein;protein_id=UUF04354.1;transl_table=11 CP098604.1 Genbank gene 2438468 2439928 . - . ID=gene-NDY25_10680;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=NDY25_10680 CP098604.1 Protein Homology CDS 2438468 2439928 . - 0 ID=cds-UUF04355.1;Parent=gene-NDY25_10680;Dbxref=NCBI_GP:UUF04355.1;Name=UUF04355.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155968.1;locus_tag=NDY25_10680;product=cardiolipin synthase;protein_id=UUF04355.1;transl_table=11 CP098604.1 Genbank gene 2440065 2441168 . + . ID=gene-NDY25_10685;Name=NDY25_10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10685 CP098604.1 Protein Homology CDS 2440065 2441168 . + 0 ID=cds-UUF04356.1;Parent=gene-NDY25_10685;Dbxref=NCBI_GP:UUF04356.1;Name=UUF04356.1;Ontology_term=GO:0003824,GO:0051536;gbkey=CDS;go_function=catalytic activity|0003824||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117235.1;locus_tag=NDY25_10685;product=PA0069 family radical SAM protein;protein_id=UUF04356.1;transl_table=11 CP098604.1 Genbank gene 2441293 2441997 . - . ID=gene-NDY25_10690;Name=NDY25_10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10690 CP098604.1 Protein Homology CDS 2441293 2441997 . - 0 ID=cds-UUF04357.1;Parent=gene-NDY25_10690;Dbxref=NCBI_GP:UUF04357.1;Name=UUF04357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482181.1;locus_tag=NDY25_10690;product=2OG-Fe(II) oxygenase;protein_id=UUF04357.1;transl_table=11 CP098604.1 Genbank pseudogene 2442242 2443293 . + . ID=gene-NDY25_10695;Name=NDY25_10695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10695;pseudo=true CP098604.1 Protein Homology CDS 2442242 2443293 . + 0 ID=cds-NDY25_10695;Parent=gene-NDY25_10695;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346137.1;locus_tag=NDY25_10695;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2443458 2444798 . - . ID=gene-NDY25_10700;Name=NDY25_10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10700 CP098604.1 Protein Homology CDS 2443458 2444798 . - 0 ID=cds-UUF04358.1;Parent=gene-NDY25_10700;Dbxref=NCBI_GP:UUF04358.1;Name=UUF04358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968187.1;locus_tag=NDY25_10700;product=outer membrane protein transport protein;protein_id=UUF04358.1;transl_table=11 CP098604.1 Genbank gene 2445016 2445708 . + . ID=gene-NDY25_10705;Name=NDY25_10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10705 CP098604.1 Protein Homology CDS 2445016 2445708 . + 0 ID=cds-UUF04359.1;Parent=gene-NDY25_10705;Dbxref=NCBI_GP:UUF04359.1;Name=UUF04359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301614.1;locus_tag=NDY25_10705;product=rhomboid family intramembrane serine protease;protein_id=UUF04359.1;transl_table=11 CP098604.1 Genbank gene 2445820 2446140 . + . ID=gene-NDY25_10710;Name=NDY25_10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10710 CP098604.1 Protein Homology CDS 2445820 2446140 . + 0 ID=cds-UUF04360.1;Parent=gene-NDY25_10710;Dbxref=NCBI_GP:UUF04360.1;Name=UUF04360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088873.1;locus_tag=NDY25_10710;product=DUF1820 family protein;protein_id=UUF04360.1;transl_table=11 CP098604.1 Genbank gene 2446140 2447126 . + . ID=gene-NDY25_10715;Name=NDY25_10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10715 CP098604.1 Protein Homology CDS 2446140 2447126 . + 0 ID=cds-UUF04361.1;Parent=gene-NDY25_10715;Dbxref=NCBI_GP:UUF04361.1;Name=UUF04361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505945.1;locus_tag=NDY25_10715;product=D-2-hydroxyacid dehydrogenase family protein;protein_id=UUF04361.1;transl_table=11 CP098604.1 Genbank gene 2447352 2448872 . - . ID=gene-NDY25_10720;Name=NDY25_10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10720 CP098604.1 Protein Homology CDS 2447352 2448872 . - 0 ID=cds-UUF04362.1;Parent=gene-NDY25_10720;Dbxref=NCBI_GP:UUF04362.1;Name=UUF04362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991665.1;locus_tag=NDY25_10720;product=S41 family peptidase;protein_id=UUF04362.1;transl_table=11 CP098604.1 Genbank gene 2449208 2450530 . - . ID=gene-NDY25_10725;Name=NDY25_10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10725 CP098604.1 Protein Homology CDS 2449208 2450530 . - 0 ID=cds-UUF04363.1;Parent=gene-NDY25_10725;Dbxref=NCBI_GP:UUF04363.1;Name=UUF04363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850464.1;locus_tag=NDY25_10725;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=UUF04363.1;transl_table=11 CP098604.1 Genbank gene 2450628 2451284 . + . ID=gene-NDY25_10730;Name=NDY25_10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10730 CP098604.1 Protein Homology CDS 2450628 2451284 . + 0 ID=cds-UUF04364.1;Parent=gene-NDY25_10730;Dbxref=NCBI_GP:UUF04364.1;Name=UUF04364.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968180.1;locus_tag=NDY25_10730;product=hypothetical protein;protein_id=UUF04364.1;transl_table=11 CP098604.1 Genbank gene 2451343 2453148 . + . ID=gene-NDY25_10735;Name=NDY25_10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10735 CP098604.1 Protein Homology CDS 2451343 2453148 . + 0 ID=cds-UUF04365.1;Parent=gene-NDY25_10735;Dbxref=NCBI_GP:UUF04365.1;Name=UUF04365.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452236.1;locus_tag=NDY25_10735;product=M28 family metallopeptidase;protein_id=UUF04365.1;transl_table=11 CP098604.1 Genbank gene 2453353 2453802 . - . ID=gene-NDY25_10740;Name=NDY25_10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10740 CP098604.1 Protein Homology CDS 2453353 2453802 . - 0 ID=cds-UUF04366.1;Parent=gene-NDY25_10740;Dbxref=NCBI_GP:UUF04366.1;Name=UUF04366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166071.1;locus_tag=NDY25_10740;product=PepSY domain-containing protein;protein_id=UUF04366.1;transl_table=11 CP098604.1 Genbank gene 2453831 2453989 . + . ID=gene-NDY25_10745;Name=NDY25_10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10745 CP098604.1 GeneMarkS-2+ CDS 2453831 2453989 . + 0 ID=cds-UUF04367.1;Parent=gene-NDY25_10745;Dbxref=NCBI_GP:UUF04367.1;Name=UUF04367.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10745;product=hypothetical protein;protein_id=UUF04367.1;transl_table=11 CP098604.1 Genbank gene 2454096 2455154 . - . ID=gene-NDY25_10750;Name=NDY25_10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10750 CP098604.1 Protein Homology CDS 2454096 2455154 . - 0 ID=cds-UUF04615.1;Parent=gene-NDY25_10750;Dbxref=NCBI_GP:UUF04615.1;Name=UUF04615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163756.1;locus_tag=NDY25_10750;product=glycoside hydrolase family 5 protein;protein_id=UUF04615.1;transl_table=11 CP098604.1 Genbank gene 2455853 2456914 . - . ID=gene-NDY25_10755;Name=NDY25_10755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10755 CP098604.1 Protein Homology CDS 2455853 2456914 . - 0 ID=cds-UUF04368.1;Parent=gene-NDY25_10755;Dbxref=NCBI_GP:UUF04368.1;Name=UUF04368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163756.1;locus_tag=NDY25_10755;product=glycoside hydrolase family 5 protein;protein_id=UUF04368.1;transl_table=11 CP098604.1 Genbank gene 2457300 2458295 . - . ID=gene-NDY25_10760;Name=NDY25_10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10760 CP098604.1 Protein Homology CDS 2457300 2458295 . - 0 ID=cds-UUF04616.1;Parent=gene-NDY25_10760;Dbxref=NCBI_GP:UUF04616.1;Name=UUF04616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452232.1;locus_tag=NDY25_10760;product=glycoside hydrolase family 5 protein;protein_id=UUF04616.1;transl_table=11 CP098604.1 Genbank gene 2458996 2460069 . - . ID=gene-NDY25_10765;Name=NDY25_10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10765 CP098604.1 Protein Homology CDS 2458996 2460069 . - 0 ID=cds-UUF04369.1;Parent=gene-NDY25_10765;Dbxref=NCBI_GP:UUF04369.1;Name=UUF04369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345792.1;locus_tag=NDY25_10765;product=glycoside hydrolase family 5 protein;protein_id=UUF04369.1;transl_table=11 CP098604.1 Genbank gene 2460430 2461428 . + . ID=gene-NDY25_10770;Name=NDY25_10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10770 CP098604.1 Protein Homology CDS 2460430 2461428 . + 0 ID=cds-UUF04370.1;Parent=gene-NDY25_10770;Dbxref=NCBI_GP:UUF04370.1;Name=UUF04370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851500.1;locus_tag=NDY25_10770;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=UUF04370.1;transl_table=11 CP098604.1 Genbank gene 2461594 2462691 . - . ID=gene-NDY25_10775;Name=NDY25_10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10775 CP098604.1 Protein Homology CDS 2461594 2462691 . - 0 ID=cds-UUF04371.1;Parent=gene-NDY25_10775;Dbxref=NCBI_GP:UUF04371.1;Name=UUF04371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452228.1;locus_tag=NDY25_10775;product=acyltransferase;protein_id=UUF04371.1;transl_table=11 CP098604.1 Genbank gene 2463398 2464879 . - . ID=gene-NDY25_10780;Name=NDY25_10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10780 CP098604.1 Protein Homology CDS 2463398 2464879 . - 0 ID=cds-UUF04372.1;Parent=gene-NDY25_10780;Dbxref=NCBI_GP:UUF04372.1;Name=UUF04372.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912482.1;locus_tag=NDY25_10780;product=FAD-dependent oxidoreductase;protein_id=UUF04372.1;transl_table=11 CP098604.1 Genbank gene 2465005 2469477 . - . ID=gene-NDY25_10785;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=NDY25_10785 CP098604.1 Protein Homology CDS 2465005 2469477 . - 0 ID=cds-UUF04373.1;Parent=gene-NDY25_10785;Dbxref=NCBI_GP:UUF04373.1;Name=UUF04373.1;Ontology_term=GO:0006537,GO:0006807,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237055.1;locus_tag=NDY25_10785;product=glutamate synthase large subunit;protein_id=UUF04373.1;transl_table=11 CP098604.1 Genbank gene 2469680 2470060 . - . ID=gene-NDY25_10790;Name=NDY25_10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10790 CP098604.1 Protein Homology CDS 2469680 2470060 . - 0 ID=cds-UUF04374.1;Parent=gene-NDY25_10790;Dbxref=NCBI_GP:UUF04374.1;Name=UUF04374.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159672.1;locus_tag=NDY25_10790;product=I78 family peptidase inhibitor;protein_id=UUF04374.1;transl_table=11 CP098604.1 Genbank gene 2470119 2471510 . + . ID=gene-NDY25_10795;Name=NDY25_10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10795 CP098604.1 Protein Homology CDS 2470119 2471510 . + 0 ID=cds-UUF04617.1;Parent=gene-NDY25_10795;Dbxref=NCBI_GP:UUF04617.1;Name=UUF04617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505966.1;locus_tag=NDY25_10795;product=DNA topoisomerase IB;protein_id=UUF04617.1;transl_table=11 CP098604.1 Genbank gene 2471485 2471664 . - . ID=gene-NDY25_10800;Name=NDY25_10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10800 CP098604.1 GeneMarkS-2+ CDS 2471485 2471664 . - 0 ID=cds-UUF04375.1;Parent=gene-NDY25_10800;Dbxref=NCBI_GP:UUF04375.1;Name=UUF04375.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10800;product=hypothetical protein;protein_id=UUF04375.1;transl_table=11 CP098604.1 Genbank gene 2471671 2472249 . - . ID=gene-NDY25_10805;Name=NDY25_10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10805 CP098604.1 Protein Homology CDS 2471671 2472249 . - 0 ID=cds-UUF04376.1;Parent=gene-NDY25_10805;Dbxref=NCBI_GP:UUF04376.1;Name=UUF04376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436880.1;locus_tag=NDY25_10805;product=methyltransferase domain-containing protein;protein_id=UUF04376.1;transl_table=11 CP098604.1 Genbank gene 2473068 2473143 . - . ID=gene-NDY25_10810;Name=NDY25_10810;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_10810 CP098604.1 cmsearch ncRNA 2473068 2473143 . - . ID=rna-NDY25_10810;Parent=gene-NDY25_10810;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10810;product=sX9 sRNA CP098604.1 cmsearch exon 2473068 2473143 . - . ID=exon-NDY25_10810-1;Parent=rna-NDY25_10810;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_10810;product=sX9 sRNA CP098604.1 Genbank gene 2473313 2473657 . - . ID=gene-NDY25_10815;Name=NDY25_10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10815 CP098604.1 Protein Homology CDS 2473313 2473657 . - 0 ID=cds-UUF04377.1;Parent=gene-NDY25_10815;Dbxref=NCBI_GP:UUF04377.1;Name=UUF04377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901594.1;locus_tag=NDY25_10815;product=hypothetical protein;protein_id=UUF04377.1;transl_table=11 CP098604.1 Genbank gene 2473943 2474722 . + . ID=gene-NDY25_10820;Name=NDY25_10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10820 CP098604.1 Protein Homology CDS 2473943 2474722 . + 0 ID=cds-UUF04378.1;Parent=gene-NDY25_10820;Dbxref=NCBI_GP:UUF04378.1;Name=UUF04378.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014708.2;locus_tag=NDY25_10820;product=pirin family protein;protein_id=UUF04378.1;transl_table=11 CP098604.1 Genbank gene 2474673 2474834 . + . ID=gene-NDY25_10825;Name=NDY25_10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10825 CP098604.1 GeneMarkS-2+ CDS 2474673 2474834 . + 0 ID=cds-UUF04379.1;Parent=gene-NDY25_10825;Dbxref=NCBI_GP:UUF04379.1;Name=UUF04379.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10825;product=hypothetical protein;protein_id=UUF04379.1;transl_table=11 CP098604.1 Genbank gene 2475085 2475699 . + . ID=gene-NDY25_10830;Name=NDY25_10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10830 CP098604.1 Protein Homology CDS 2475085 2475699 . + 0 ID=cds-UUF04380.1;Parent=gene-NDY25_10830;Dbxref=NCBI_GP:UUF04380.1;Name=UUF04380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452221.1;locus_tag=NDY25_10830;product=NAD(P)H-dependent oxidoreductase;protein_id=UUF04380.1;transl_table=11 CP098604.1 Genbank gene 2475956 2476903 . - . ID=gene-NDY25_10835;Name=NDY25_10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10835 CP098604.1 Protein Homology CDS 2475956 2476903 . - 0 ID=cds-UUF04381.1;Parent=gene-NDY25_10835;Dbxref=NCBI_GP:UUF04381.1;Name=UUF04381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944881.1;locus_tag=NDY25_10835;product=LysR family transcriptional regulator;protein_id=UUF04381.1;transl_table=11 CP098604.1 Genbank gene 2477765 2477986 . - . ID=gene-NDY25_10840;Name=NDY25_10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10840 CP098604.1 GeneMarkS-2+ CDS 2477765 2477986 . - 0 ID=cds-UUF04382.1;Parent=gene-NDY25_10840;Dbxref=NCBI_GP:UUF04382.1;Name=UUF04382.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10840;product=hypothetical protein;protein_id=UUF04382.1;transl_table=11 CP098604.1 Genbank gene 2477983 2485374 . - . ID=gene-NDY25_10845;Name=NDY25_10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10845 CP098604.1 Protein Homology CDS 2477983 2485374 . - 0 ID=cds-UUF04383.1;Parent=gene-NDY25_10845;Dbxref=NCBI_GP:UUF04383.1;Name=UUF04383.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF028476.2;locus_tag=NDY25_10845;product=cyclic beta 1-2 glucan synthetase;protein_id=UUF04383.1;transl_table=11 CP098604.1 Genbank gene 2485350 2486558 . - . ID=gene-NDY25_10850;Name=NDY25_10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10850 CP098604.1 GeneMarkS-2+ CDS 2485350 2486558 . - 0 ID=cds-UUF04384.1;Parent=gene-NDY25_10850;Dbxref=NCBI_GP:UUF04384.1;Name=UUF04384.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10850;product=hypothetical protein;protein_id=UUF04384.1;transl_table=11 CP098604.1 Genbank gene 2487152 2489500 . + . ID=gene-NDY25_10855;Name=NDY25_10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10855 CP098604.1 Protein Homology CDS 2487152 2489500 . + 0 ID=cds-UUF04618.1;Parent=gene-NDY25_10855;Dbxref=NCBI_GP:UUF04618.1;Name=UUF04618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991634.1;locus_tag=NDY25_10855;product=penicillin acylase family protein;protein_id=UUF04618.1;transl_table=11 CP098604.1 Genbank gene 2489739 2490872 . - . ID=gene-NDY25_10860;Name=NDY25_10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10860 CP098604.1 Protein Homology CDS 2489739 2490872 . - 0 ID=cds-UUF04385.1;Parent=gene-NDY25_10860;Dbxref=NCBI_GP:UUF04385.1;Name=UUF04385.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024758.2;locus_tag=NDY25_10860;product=serine protease;protein_id=UUF04385.1;transl_table=11 CP098604.1 Genbank gene 2491218 2492297 . - . ID=gene-NDY25_10865;Name=NDY25_10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10865 CP098604.1 GeneMarkS-2+ CDS 2491218 2492297 . - 0 ID=cds-UUF04386.1;Parent=gene-NDY25_10865;Dbxref=NCBI_GP:UUF04386.1;Name=UUF04386.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10865;product=hypothetical protein;protein_id=UUF04386.1;transl_table=11 CP098604.1 Genbank gene 2492743 2493141 . + . ID=gene-NDY25_10870;Name=NDY25_10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10870 CP098604.1 Protein Homology CDS 2492743 2493141 . + 0 ID=cds-UUF04387.1;Parent=gene-NDY25_10870;Dbxref=NCBI_GP:UUF04387.1;Name=UUF04387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572904.1;locus_tag=NDY25_10870;product=BlaI/MecI/CopY family transcriptional regulator;protein_id=UUF04387.1;transl_table=11 CP098604.1 Genbank gene 2493145 2494836 . + . ID=gene-NDY25_10875;Name=NDY25_10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10875 CP098604.1 Protein Homology CDS 2493145 2494836 . + 0 ID=cds-UUF04388.1;Parent=gene-NDY25_10875;Dbxref=NCBI_GP:UUF04388.1;Name=UUF04388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450698.1;locus_tag=NDY25_10875;product=M56 family metallopeptidase;protein_id=UUF04388.1;transl_table=11 CP098604.1 Genbank gene 2495700 2496206 . + . ID=gene-NDY25_10880;Name=NDY25_10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10880 CP098604.1 Protein Homology CDS 2495700 2496206 . + 0 ID=cds-UUF04619.1;Parent=gene-NDY25_10880;Dbxref=NCBI_GP:UUF04619.1;Name=UUF04619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450699.1;locus_tag=NDY25_10880;product=hypothetical protein;protein_id=UUF04619.1;transl_table=11 CP098604.1 Genbank gene 2496553 2497350 . - . ID=gene-NDY25_10885;Name=NDY25_10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10885 CP098604.1 Protein Homology CDS 2496553 2497350 . - 0 ID=cds-UUF04389.1;Parent=gene-NDY25_10885;Dbxref=NCBI_GP:UUF04389.1;Name=UUF04389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158072.1;locus_tag=NDY25_10885;product=DUF1868 domain-containing protein;protein_id=UUF04389.1;transl_table=11 CP098604.1 Genbank gene 2497361 2500024 . - . ID=gene-NDY25_10890;Name=NDY25_10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10890 CP098604.1 Protein Homology CDS 2497361 2500024 . - 0 ID=cds-UUF04390.1;Parent=gene-NDY25_10890;Dbxref=NCBI_GP:UUF04390.1;Name=UUF04390.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407250.1;locus_tag=NDY25_10890;product=TonB-dependent receptor;protein_id=UUF04390.1;transl_table=11 CP098604.1 Genbank gene 2500129 2501286 . + . ID=gene-NDY25_10895;Name=NDY25_10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10895 CP098604.1 Protein Homology CDS 2500129 2501286 . + 0 ID=cds-UUF04391.1;Parent=gene-NDY25_10895;Dbxref=NCBI_GP:UUF04391.1;Name=UUF04391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158073.1;locus_tag=NDY25_10895;product=ROK family protein;protein_id=UUF04391.1;transl_table=11 CP098604.1 Genbank gene 2501419 2503569 . + . ID=gene-NDY25_10900;Name=NDY25_10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10900 CP098604.1 Protein Homology CDS 2501419 2503569 . + 0 ID=cds-UUF04392.1;Parent=gene-NDY25_10900;Dbxref=NCBI_GP:UUF04392.1;Name=UUF04392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436888.1;locus_tag=NDY25_10900;product=glycerophosphodiester phosphodiesterase family protein;protein_id=UUF04392.1;transl_table=11 CP098604.1 Genbank gene 2503595 2505370 . - . ID=gene-NDY25_10905;Name=NDY25_10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10905 CP098604.1 Protein Homology CDS 2503595 2505370 . - 0 ID=cds-UUF04393.1;Parent=gene-NDY25_10905;Dbxref=NCBI_GP:UUF04393.1;Name=UUF04393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501376.1;locus_tag=NDY25_10905;product=ribonuclease H-like domain-containing protein;protein_id=UUF04393.1;transl_table=11 CP098604.1 Genbank gene 2505367 2507862 . - . ID=gene-NDY25_10910;Name=NDY25_10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10910 CP098604.1 Protein Homology CDS 2505367 2507862 . - 0 ID=cds-UUF04394.1;Parent=gene-NDY25_10910;Dbxref=NCBI_GP:UUF04394.1;Name=UUF04394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237057.1;locus_tag=NDY25_10910;product=DEAD/DEAH box helicase;protein_id=UUF04394.1;transl_table=11 CP098604.1 Genbank gene 2507993 2509141 . - . ID=gene-NDY25_10915;Name=NDY25_10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10915 CP098604.1 Protein Homology CDS 2507993 2509141 . - 0 ID=cds-UUF04395.1;Parent=gene-NDY25_10915;Dbxref=NCBI_GP:UUF04395.1;Name=UUF04395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035313.1;locus_tag=NDY25_10915;product=Fic family protein;protein_id=UUF04395.1;transl_table=11 CP098604.1 Genbank gene 2509434 2510096 . + . ID=gene-NDY25_10920;Name=NDY25_10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10920 CP098604.1 Protein Homology CDS 2509434 2510096 . + 0 ID=cds-UUF04396.1;Parent=gene-NDY25_10920;Dbxref=NCBI_GP:UUF04396.1;Name=UUF04396.1;Ontology_term=GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809731.1;locus_tag=NDY25_10920;product=hemolysin III family protein;protein_id=UUF04396.1;transl_table=11 CP098604.1 Genbank gene 2510177 2510479 . - . ID=gene-NDY25_10925;Name=NDY25_10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10925 CP098604.1 Protein Homology CDS 2510177 2510479 . - 0 ID=cds-UUF04397.1;Parent=gene-NDY25_10925;Dbxref=NCBI_GP:UUF04397.1;Name=UUF04397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035315.1;locus_tag=NDY25_10925;product=plasmid stabilization protein;protein_id=UUF04397.1;transl_table=11 CP098604.1 Genbank gene 2510476 2510949 . - . ID=gene-NDY25_10930;Name=NDY25_10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10930 CP098604.1 Protein Homology CDS 2510476 2510949 . - 0 ID=cds-UUF04398.1;Parent=gene-NDY25_10930;Dbxref=NCBI_GP:UUF04398.1;Name=UUF04398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452060.1;locus_tag=NDY25_10930;product=hypothetical protein;protein_id=UUF04398.1;transl_table=11 CP098604.1 Genbank gene 2511181 2511705 . - . ID=gene-NDY25_10935;Name=NDY25_10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10935 CP098604.1 Protein Homology CDS 2511181 2511705 . - 0 ID=cds-UUF04399.1;Parent=gene-NDY25_10935;Dbxref=NCBI_GP:UUF04399.1;Name=UUF04399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902924.1;locus_tag=NDY25_10935;product=hypothetical protein;protein_id=UUF04399.1;transl_table=11 CP098604.1 Genbank gene 2511832 2512794 . - . ID=gene-NDY25_10940;Name=NDY25_10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10940 CP098604.1 Protein Homology CDS 2511832 2512794 . - 0 ID=cds-UUF04620.1;Parent=gene-NDY25_10940;Dbxref=NCBI_GP:UUF04620.1;Name=UUF04620.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088902.1;locus_tag=NDY25_10940;product=hypothetical protein;protein_id=UUF04620.1;transl_table=11 CP098604.1 Genbank gene 2513593 2514306 . + . ID=gene-NDY25_10945;Name=NDY25_10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10945 CP098604.1 Protein Homology CDS 2513593 2514306 . + 0 ID=cds-UUF04400.1;Parent=gene-NDY25_10945;Dbxref=NCBI_GP:UUF04400.1;Name=UUF04400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902928.1;locus_tag=NDY25_10945;product=hypothetical protein;protein_id=UUF04400.1;transl_table=11 CP098604.1 Genbank gene 2514311 2515234 . - . ID=gene-NDY25_10950;Name=NDY25_10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10950 CP098604.1 Protein Homology CDS 2514311 2515234 . - 0 ID=cds-UUF04401.1;Parent=gene-NDY25_10950;Dbxref=NCBI_GP:UUF04401.1;Name=UUF04401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452053.1;locus_tag=NDY25_10950;product=LysR family transcriptional regulator;protein_id=UUF04401.1;transl_table=11 CP098604.1 Genbank gene 2515351 2516103 . + . ID=gene-NDY25_10955;Name=NDY25_10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10955 CP098604.1 Protein Homology CDS 2515351 2516103 . + 0 ID=cds-UUF04402.1;Parent=gene-NDY25_10955;Dbxref=NCBI_GP:UUF04402.1;Name=UUF04402.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009043159.1;locus_tag=NDY25_10955;product=SDR family oxidoreductase;protein_id=UUF04402.1;transl_table=11 CP098604.1 Genbank gene 2516308 2516634 . - . ID=gene-NDY25_10960;Name=NDY25_10960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10960 CP098604.1 Protein Homology CDS 2516308 2516634 . - 0 ID=cds-UUF04403.1;Parent=gene-NDY25_10960;Dbxref=NCBI_GP:UUF04403.1;Name=UUF04403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452050.1;locus_tag=NDY25_10960;product=nuclear transport factor 2 family protein;protein_id=UUF04403.1;transl_table=11 CP098604.1 Genbank gene 2516725 2517072 . + . ID=gene-NDY25_10965;Name=NDY25_10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10965 CP098604.1 Protein Homology CDS 2516725 2517072 . + 0 ID=cds-UUF04404.1;Parent=gene-NDY25_10965;Dbxref=NCBI_GP:UUF04404.1;Name=UUF04404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452049.1;locus_tag=NDY25_10965;product=helix-turn-helix transcriptional regulator;protein_id=UUF04404.1;transl_table=11 CP098604.1 Genbank gene 2517275 2517418 . + . ID=gene-NDY25_10970;Name=NDY25_10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10970 CP098604.1 Protein Homology CDS 2517275 2517418 . + 0 ID=cds-UUF04405.1;Parent=gene-NDY25_10970;Dbxref=NCBI_GP:UUF04405.1;Name=UUF04405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165256.1;locus_tag=NDY25_10970;product=hypothetical protein;protein_id=UUF04405.1;transl_table=11 CP098604.1 Genbank gene 2517803 2517991 . + . ID=gene-NDY25_10975;Name=NDY25_10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10975 CP098604.1 GeneMarkS-2+ CDS 2517803 2517991 . + 0 ID=cds-UUF04406.1;Parent=gene-NDY25_10975;Dbxref=NCBI_GP:UUF04406.1;Name=UUF04406.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10975;product=hypothetical protein;protein_id=UUF04406.1;transl_table=11 CP098604.1 Genbank gene 2518287 2519636 . + . ID=gene-NDY25_10980;Name=NDY25_10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10980 CP098604.1 GeneMarkS-2+ CDS 2518287 2519636 . + 0 ID=cds-UUF04407.1;Parent=gene-NDY25_10980;Dbxref=NCBI_GP:UUF04407.1;Name=UUF04407.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_10980;product=hypothetical protein;protein_id=UUF04407.1;transl_table=11 CP098604.1 Genbank gene 2519843 2521732 . + . ID=gene-NDY25_10985;Name=NDY25_10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10985 CP098604.1 Protein Homology CDS 2519843 2521732 . + 0 ID=cds-UUF04408.1;Parent=gene-NDY25_10985;Dbxref=NCBI_GP:UUF04408.1;Name=UUF04408.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024565.2;locus_tag=NDY25_10985;product=AAA family ATPase;protein_id=UUF04408.1;transl_table=11 CP098604.1 Genbank pseudogene 2521717 2522124 . + . ID=gene-NDY25_10990;Name=NDY25_10990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_10990;pseudo=true CP098604.1 Protein Homology CDS 2521717 2522124 . + 0 ID=cds-NDY25_10990;Parent=gene-NDY25_10990;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024565.2;locus_tag=NDY25_10990;product=AAA family ATPase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2522530 2523638 . + . ID=gene-NDY25_10995;Name=NDY25_10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_10995 CP098604.1 Protein Homology CDS 2522530 2522791 . + 0 ID=cds-UUF04409.1;Parent=gene-NDY25_10995;Dbxref=NCBI_GP:UUF04409.1;Name=UUF04409.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_10995;product=IS3 family transposase;protein_id=UUF04409.1;transl_table=11 CP098604.1 Protein Homology CDS 2522791 2523638 . + 2 ID=cds-UUF04409.1;Parent=gene-NDY25_10995;Dbxref=NCBI_GP:UUF04409.1;Name=UUF04409.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_10995;product=IS3 family transposase;protein_id=UUF04409.1;transl_table=11 CP098604.1 Genbank gene 2523737 2523961 . + . ID=gene-NDY25_11000;Name=NDY25_11000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11000 CP098604.1 Protein Homology CDS 2523737 2523961 . + 0 ID=cds-UUF04410.1;Parent=gene-NDY25_11000;Dbxref=NCBI_GP:UUF04410.1;Name=UUF04410.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451691.1;locus_tag=NDY25_11000;product=hypothetical protein;protein_id=UUF04410.1;transl_table=11 CP098604.1 Genbank pseudogene 2524023 2524315 . - . ID=gene-NDY25_11005;Name=NDY25_11005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11005;pseudo=true CP098604.1 Protein Homology CDS 2524023 2524315 . - 0 ID=cds-NDY25_11005;Parent=gene-NDY25_11005;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574041.1;locus_tag=NDY25_11005;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2524351 2526237 . - . ID=gene-NDY25_11010;Name=NDY25_11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11010 CP098604.1 Protein Homology CDS 2524351 2526237 . - 0 ID=cds-UUF04411.1;Parent=gene-NDY25_11010;Dbxref=NCBI_GP:UUF04411.1;Name=UUF04411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449189.1;locus_tag=NDY25_11010;product=hypothetical protein;protein_id=UUF04411.1;transl_table=11 CP098604.1 Genbank gene 2526254 2526784 . - . ID=gene-NDY25_11015;Name=NDY25_11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11015 CP098604.1 Protein Homology CDS 2526254 2526784 . - 0 ID=cds-UUF04412.1;Parent=gene-NDY25_11015;Dbxref=NCBI_GP:UUF04412.1;Name=UUF04412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449190.1;locus_tag=NDY25_11015;product=hypothetical protein;protein_id=UUF04412.1;transl_table=11 CP098604.1 Genbank gene 2527005 2527670 . - . ID=gene-NDY25_11020;Name=NDY25_11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11020 CP098604.1 Protein Homology CDS 2527005 2527670 . - 0 ID=cds-UUF04621.1;Parent=gene-NDY25_11020;Dbxref=NCBI_GP:UUF04621.1;Name=UUF04621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944713.1;locus_tag=NDY25_11020;product=hypothetical protein;protein_id=UUF04621.1;transl_table=11 CP098604.1 Genbank gene 2527785 2528006 . - . ID=gene-NDY25_11025;Name=NDY25_11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11025 CP098604.1 Protein Homology CDS 2527785 2528006 . - 0 ID=cds-UUF04413.1;Parent=gene-NDY25_11025;Dbxref=NCBI_GP:UUF04413.1;Name=UUF04413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449192.1;locus_tag=NDY25_11025;product=hypothetical protein;protein_id=UUF04413.1;transl_table=11 CP098604.1 Genbank gene 2528618 2528968 . + . ID=gene-NDY25_11030;Name=NDY25_11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11030 CP098604.1 Protein Homology CDS 2528618 2528968 . + 0 ID=cds-UUF04414.1;Parent=gene-NDY25_11030;Dbxref=NCBI_GP:UUF04414.1;Name=UUF04414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809755.1;locus_tag=NDY25_11030;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF04414.1;transl_table=11 CP098604.1 Genbank gene 2529082 2529306 . + . ID=gene-NDY25_11035;Name=NDY25_11035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11035 CP098604.1 Protein Homology CDS 2529082 2529306 . + 0 ID=cds-UUF04415.1;Parent=gene-NDY25_11035;Dbxref=NCBI_GP:UUF04415.1;Name=UUF04415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451691.1;locus_tag=NDY25_11035;product=hypothetical protein;protein_id=UUF04415.1;transl_table=11 CP098604.1 Genbank gene 2529870 2530241 . + . ID=gene-NDY25_11040;Name=NDY25_11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11040 CP098604.1 GeneMarkS-2+ CDS 2529870 2530241 . + 0 ID=cds-UUF04416.1;Parent=gene-NDY25_11040;Dbxref=NCBI_GP:UUF04416.1;Name=UUF04416.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11040;product=hypothetical protein;protein_id=UUF04416.1;transl_table=11 CP098604.1 Genbank gene 2530873 2531280 . + . ID=gene-NDY25_11045;Name=NDY25_11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11045 CP098604.1 Protein Homology CDS 2530873 2531280 . + 0 ID=cds-UUF04417.1;Parent=gene-NDY25_11045;Dbxref=NCBI_GP:UUF04417.1;Name=UUF04417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902939.1;locus_tag=NDY25_11045;product=hypothetical protein;protein_id=UUF04417.1;transl_table=11 CP098604.1 Genbank gene 2531549 2531995 . - . ID=gene-NDY25_11050;Name=NDY25_11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11050 CP098604.1 Protein Homology CDS 2531549 2531995 . - 0 ID=cds-UUF04418.1;Parent=gene-NDY25_11050;Dbxref=NCBI_GP:UUF04418.1;Name=UUF04418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574041.1;locus_tag=NDY25_11050;product=hypothetical protein;protein_id=UUF04418.1;transl_table=11 CP098604.1 Genbank gene 2532099 2533994 . - . ID=gene-NDY25_11055;Name=NDY25_11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11055 CP098604.1 Protein Homology CDS 2532099 2533994 . - 0 ID=cds-UUF04419.1;Parent=gene-NDY25_11055;Dbxref=NCBI_GP:UUF04419.1;Name=UUF04419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449189.1;locus_tag=NDY25_11055;product=hypothetical protein;protein_id=UUF04419.1;transl_table=11 CP098604.1 Genbank gene 2534015 2534479 . - . ID=gene-NDY25_11060;Name=NDY25_11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11060 CP098604.1 GeneMarkS-2+ CDS 2534015 2534479 . - 0 ID=cds-UUF04420.1;Parent=gene-NDY25_11060;Dbxref=NCBI_GP:UUF04420.1;Name=UUF04420.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11060;product=hypothetical protein;protein_id=UUF04420.1;transl_table=11 CP098604.1 Genbank gene 2534763 2535470 . - . ID=gene-NDY25_11065;Name=NDY25_11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11065 CP098604.1 GeneMarkS-2+ CDS 2534763 2535470 . - 0 ID=cds-UUF04421.1;Parent=gene-NDY25_11065;Dbxref=NCBI_GP:UUF04421.1;Name=UUF04421.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11065;product=hypothetical protein;protein_id=UUF04421.1;transl_table=11 CP098604.1 Genbank gene 2535541 2535816 . - . ID=gene-NDY25_11070;Name=NDY25_11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11070 CP098604.1 GeneMarkS-2+ CDS 2535541 2535816 . - 0 ID=cds-UUF04422.1;Parent=gene-NDY25_11070;Dbxref=NCBI_GP:UUF04422.1;Name=UUF04422.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11070;product=hypothetical protein;protein_id=UUF04422.1;transl_table=11 CP098604.1 Genbank gene 2535870 2536118 . - . ID=gene-NDY25_11075;Name=NDY25_11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11075 CP098604.1 Protein Homology CDS 2535870 2536118 . - 0 ID=cds-UUF04423.1;Parent=gene-NDY25_11075;Dbxref=NCBI_GP:UUF04423.1;Name=UUF04423.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012371.2;locus_tag=NDY25_11075;product=serine hydrolase;protein_id=UUF04423.1;transl_table=11 CP098604.1 Genbank gene 2536115 2536858 . - . ID=gene-NDY25_11080;Name=istB;gbkey=Gene;gene=istB;gene_biotype=protein_coding;locus_tag=NDY25_11080 CP098604.1 Protein Homology CDS 2536115 2536858 . - 0 ID=cds-UUF04424.1;Parent=gene-NDY25_11080;Dbxref=NCBI_GP:UUF04424.1;Name=UUF04424.1;Ontology_term=GO:0005524;gbkey=CDS;gene=istB;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966719.1;locus_tag=NDY25_11080;product=IS21-like element helper ATPase IstB;protein_id=UUF04424.1;transl_table=11 CP098604.1 Genbank gene 2536874 2538409 . - . ID=gene-NDY25_11085;Name=istA;gbkey=Gene;gene=istA;gene_biotype=protein_coding;locus_tag=NDY25_11085 CP098604.1 Protein Homology CDS 2536874 2538409 . - 0 ID=cds-UUF04425.1;Parent=gene-NDY25_11085;Dbxref=NCBI_GP:UUF04425.1;Name=UUF04425.1;Ontology_term=GO:0004803;gbkey=CDS;gene=istA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966720.1;locus_tag=NDY25_11085;product=IS21 family transposase;protein_id=UUF04425.1;transl_table=11 CP098604.1 Genbank gene 2538406 2538597 . - . ID=gene-NDY25_11090;Name=NDY25_11090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11090 CP098604.1 GeneMarkS-2+ CDS 2538406 2538597 . - 0 ID=cds-UUF04426.1;Parent=gene-NDY25_11090;Dbxref=NCBI_GP:UUF04426.1;Name=UUF04426.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11090;product=hypothetical protein;protein_id=UUF04426.1;transl_table=11 CP098604.1 Genbank gene 2538692 2539729 . + . ID=gene-NDY25_11095;Name=NDY25_11095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11095 CP098604.1 Protein Homology CDS 2538692 2539729 . + 0 ID=cds-UUF04427.1;Parent=gene-NDY25_11095;Dbxref=NCBI_GP:UUF04427.1;Name=UUF04427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966722.1;locus_tag=NDY25_11095;product=hypothetical protein;protein_id=UUF04427.1;transl_table=11 CP098604.1 Genbank gene 2540713 2541183 . + . ID=gene-NDY25_11100;Name=NDY25_11100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11100 CP098604.1 GeneMarkS-2+ CDS 2540713 2541183 . + 0 ID=cds-UUF04428.1;Parent=gene-NDY25_11100;Dbxref=NCBI_GP:UUF04428.1;Name=UUF04428.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11100;product=hypothetical protein;protein_id=UUF04428.1;transl_table=11 CP098604.1 Genbank pseudogene 2541776 2543863 . + . ID=gene-NDY25_11105;Name=NDY25_11105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11105;pseudo=true CP098604.1 Protein Homology CDS 2541776 2543863 . + 0 ID=cds-NDY25_11105;Parent=gene-NDY25_11105;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368375.1;locus_tag=NDY25_11105;product=type III effector;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2544306 2544728 . + . ID=gene-NDY25_11110;Name=NDY25_11110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11110 CP098604.1 GeneMarkS-2+ CDS 2544306 2544728 . + 0 ID=cds-UUF04763.1;Parent=gene-NDY25_11110;Dbxref=NCBI_GP:UUF04763.1;Name=UUF04763.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11110;product=hypothetical protein;protein_id=UUF04763.1;transl_table=11 CP098604.1 Genbank gene 2545546 2546580 . - . ID=gene-NDY25_11115;Name=NDY25_11115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11115 CP098604.1 Protein Homology CDS 2545546 2546580 . - 0 ID=cds-UUF04429.1;Parent=gene-NDY25_11115;Dbxref=NCBI_GP:UUF04429.1;Name=UUF04429.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012371.2;locus_tag=NDY25_11115;product=beta-lactamase family protein;protein_id=UUF04429.1;transl_table=11 CP098604.1 Genbank gene 2546602 2546886 . - . ID=gene-NDY25_11120;Name=NDY25_11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11120 CP098604.1 GeneMarkS-2+ CDS 2546602 2546886 . - 0 ID=cds-UUF04430.1;Parent=gene-NDY25_11120;Dbxref=NCBI_GP:UUF04430.1;Name=UUF04430.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11120;product=hypothetical protein;protein_id=UUF04430.1;transl_table=11 CP098604.1 Genbank gene 2547245 2547433 . - . ID=gene-NDY25_11125;Name=NDY25_11125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11125 CP098604.1 Protein Homology CDS 2547245 2547433 . - 0 ID=cds-UUF04431.1;Parent=gene-NDY25_11125;Dbxref=NCBI_GP:UUF04431.1;Name=UUF04431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050089.1;locus_tag=NDY25_11125;product=CsbD family protein;protein_id=UUF04431.1;transl_table=11 CP098604.1 Genbank gene 2547566 2549086 . - . ID=gene-NDY25_11130;Name=NDY25_11130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11130 CP098604.1 Protein Homology CDS 2547566 2549086 . - 0 ID=cds-UUF04432.1;Parent=gene-NDY25_11130;Dbxref=NCBI_GP:UUF04432.1;Name=UUF04432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451427.1;locus_tag=NDY25_11130;product=helix-turn-helix transcriptional regulator;protein_id=UUF04432.1;transl_table=11 CP098604.1 Genbank gene 2549250 2550233 . + . ID=gene-NDY25_11135;Name=NDY25_11135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11135 CP098604.1 Protein Homology CDS 2549250 2550233 . + 0 ID=cds-UUF04433.1;Parent=gene-NDY25_11135;Dbxref=NCBI_GP:UUF04433.1;Name=UUF04433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451428.1;locus_tag=NDY25_11135;product=hypothetical protein;protein_id=UUF04433.1;transl_table=11 CP098604.1 Genbank gene 2551021 2552199 . - . ID=gene-NDY25_11140;Name=NDY25_11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11140 CP098604.1 Protein Homology CDS 2551021 2552199 . - 0 ID=cds-UUF04434.1;Parent=gene-NDY25_11140;Dbxref=NCBI_GP:UUF04434.1;Name=UUF04434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159055.1;locus_tag=NDY25_11140;product=HDOD domain-containing protein;protein_id=UUF04434.1;transl_table=11 CP098604.1 Genbank gene 2552520 2552831 . - . ID=gene-NDY25_11145;Name=NDY25_11145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11145 CP098604.1 Protein Homology CDS 2552520 2552831 . - 0 ID=cds-UUF04435.1;Parent=gene-NDY25_11145;Dbxref=NCBI_GP:UUF04435.1;Name=UUF04435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257045.1;locus_tag=NDY25_11145;product=hypothetical protein;protein_id=UUF04435.1;transl_table=11 CP098604.1 Genbank gene 2552828 2553892 . - . ID=gene-NDY25_11150;Name=NDY25_11150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11150 CP098604.1 Protein Homology CDS 2552828 2553892 . - 0 ID=cds-UUF04436.1;Parent=gene-NDY25_11150;Dbxref=NCBI_GP:UUF04436.1;Name=UUF04436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163989.1;locus_tag=NDY25_11150;product=M4 family metallopeptidase;protein_id=UUF04436.1;transl_table=11 CP098604.1 Genbank gene 2554003 2554659 . - . ID=gene-NDY25_11155;Name=NDY25_11155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11155 CP098604.1 Protein Homology CDS 2554003 2554659 . - 0 ID=cds-UUF04437.1;Parent=gene-NDY25_11155;Dbxref=NCBI_GP:UUF04437.1;Name=UUF04437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303231.1;locus_tag=NDY25_11155;product=SDR family oxidoreductase;protein_id=UUF04437.1;transl_table=11 CP098604.1 Genbank gene 2554896 2555348 . + . ID=gene-NDY25_11160;Name=NDY25_11160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11160 CP098604.1 Protein Homology CDS 2554896 2555348 . + 0 ID=cds-UUF04438.1;Parent=gene-NDY25_11160;Dbxref=NCBI_GP:UUF04438.1;Name=UUF04438.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453260.1;locus_tag=NDY25_11160;product=NUDIX domain-containing protein;protein_id=UUF04438.1;transl_table=11 CP098604.1 Genbank gene 2555414 2556553 . + . ID=gene-NDY25_11165;Name=NDY25_11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11165 CP098604.1 Protein Homology CDS 2555414 2556553 . + 0 ID=cds-UUF04439.1;Parent=gene-NDY25_11165;Dbxref=NCBI_GP:UUF04439.1;Name=UUF04439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116523.1;locus_tag=NDY25_11165;product=alpha/beta hydrolase;protein_id=UUF04439.1;transl_table=11 CP098604.1 Genbank gene 2556656 2557054 . + . ID=gene-NDY25_11170;Name=NDY25_11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11170 CP098604.1 Protein Homology CDS 2556656 2557054 . + 0 ID=cds-UUF04440.1;Parent=gene-NDY25_11170;Dbxref=NCBI_GP:UUF04440.1;Name=UUF04440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809798.1;locus_tag=NDY25_11170;product=host attachment family protein;protein_id=UUF04440.1;transl_table=11 CP098604.1 Genbank gene 2557073 2557417 . + . ID=gene-NDY25_11175;Name=NDY25_11175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11175 CP098604.1 Protein Homology CDS 2557073 2557417 . + 0 ID=cds-UUF04441.1;Parent=gene-NDY25_11175;Dbxref=NCBI_GP:UUF04441.1;Name=UUF04441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453263.1;locus_tag=NDY25_11175;product=thioredoxin family protein;protein_id=UUF04441.1;transl_table=11 CP098604.1 Genbank gene 2557743 2559233 . + . ID=gene-NDY25_11180;Name=proP;gbkey=Gene;gene=proP;gene_biotype=protein_coding;locus_tag=NDY25_11180 CP098604.1 Protein Homology CDS 2557743 2559233 . + 0 ID=cds-UUF04622.1;Parent=gene-NDY25_11180;Dbxref=NCBI_GP:UUF04622.1;Name=UUF04622.1;Ontology_term=GO:0055085,GO:0022857,GO:0016021;gbkey=CDS;gene=proP;go_component=integral component of membrane|0016021||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487917.1;locus_tag=NDY25_11180;product=glycine betaine/L-proline transporter ProP;protein_id=UUF04622.1;transl_table=11 CP098604.1 Genbank gene 2559276 2559725 . - . ID=gene-NDY25_11185;Name=NDY25_11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11185 CP098604.1 Protein Homology CDS 2559276 2559725 . - 0 ID=cds-UUF04442.1;Parent=gene-NDY25_11185;Dbxref=NCBI_GP:UUF04442.1;Name=UUF04442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453265.1;locus_tag=NDY25_11185;product=SRPBCC domain-containing protein;protein_id=UUF04442.1;transl_table=11 CP098604.1 Genbank gene 2559897 2560691 . + . ID=gene-NDY25_11190;Name=NDY25_11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11190 CP098604.1 Protein Homology CDS 2559897 2560691 . + 0 ID=cds-UUF04623.1;Parent=gene-NDY25_11190;Dbxref=NCBI_GP:UUF04623.1;Name=UUF04623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116524.1;locus_tag=NDY25_11190;product=EcsC family protein;protein_id=UUF04623.1;transl_table=11 CP098604.1 Genbank gene 2561314 2561952 . + . ID=gene-NDY25_11195;Name=NDY25_11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11195 CP098604.1 Protein Homology CDS 2561314 2561952 . + 0 ID=cds-UUF04443.1;Parent=gene-NDY25_11195;Dbxref=NCBI_GP:UUF04443.1;Name=UUF04443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035344.1;locus_tag=NDY25_11195;product=class I SAM-dependent methyltransferase;protein_id=UUF04443.1;transl_table=11 CP098604.1 Genbank gene 2562240 2564009 . - . ID=gene-NDY25_11200;Name=NDY25_11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11200 CP098604.1 Protein Homology CDS 2562240 2564009 . - 0 ID=cds-UUF04444.1;Parent=gene-NDY25_11200;Dbxref=NCBI_GP:UUF04444.1;Name=UUF04444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903912.1;locus_tag=NDY25_11200;product=carboxypeptidase regulatory-like domain-containing protein;protein_id=UUF04444.1;transl_table=11 CP098604.1 Genbank gene 2564006 2566282 . - . ID=gene-NDY25_11205;Name=NDY25_11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11205 CP098604.1 Protein Homology CDS 2564006 2566282 . - 0 ID=cds-UUF04445.1;Parent=gene-NDY25_11205;Dbxref=NCBI_GP:UUF04445.1;Name=UUF04445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157979.1;locus_tag=NDY25_11205;product=DUF4175 domain-containing protein;protein_id=UUF04445.1;transl_table=11 CP098604.1 Genbank gene 2566279 2567469 . - . ID=gene-NDY25_11210;Name=NDY25_11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11210 CP098604.1 Protein Homology CDS 2566279 2567469 . - 0 ID=cds-UUF04446.1;Parent=gene-NDY25_11210;Dbxref=NCBI_GP:UUF04446.1;Name=UUF04446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157978.1;locus_tag=NDY25_11210;product=BatA domain-containing protein;protein_id=UUF04446.1;transl_table=11 CP098604.1 Genbank pseudogene 2567540 2568436 . - . ID=gene-NDY25_11215;Name=NDY25_11215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11215;pseudo=true CP098604.1 Protein Homology CDS 2567540 2568436 . - 0 ID=cds-NDY25_11215;Parent=gene-NDY25_11215;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157977.1;locus_tag=NDY25_11215;product=DUF58 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2568450 2569442 . - . ID=gene-NDY25_11220;Name=NDY25_11220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11220 CP098604.1 Protein Homology CDS 2568450 2569442 . - 0 ID=cds-UUF04447.1;Parent=gene-NDY25_11220;Dbxref=NCBI_GP:UUF04447.1;Name=UUF04447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916000.1;locus_tag=NDY25_11220;product=MoxR family ATPase;protein_id=UUF04447.1;transl_table=11 CP098604.1 Genbank gene 2569544 2570215 . - . ID=gene-NDY25_11225;Name=NDY25_11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11225 CP098604.1 Protein Homology CDS 2569544 2570215 . - 0 ID=cds-UUF04624.1;Parent=gene-NDY25_11225;Dbxref=NCBI_GP:UUF04624.1;Name=UUF04624.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930104.1;locus_tag=NDY25_11225;product=DUF4159 domain-containing protein;protein_id=UUF04624.1;transl_table=11 CP098604.1 Genbank gene 2570360 2571694 . - . ID=gene-NDY25_11230;Name=NDY25_11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11230 CP098604.1 Protein Homology CDS 2570360 2571694 . - 0 ID=cds-UUF04448.1;Parent=gene-NDY25_11230;Dbxref=NCBI_GP:UUF04448.1;Name=UUF04448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962710.1;locus_tag=NDY25_11230;product=TldD/PmbA family protein;protein_id=UUF04448.1;transl_table=11 CP098604.1 Genbank gene 2571709 2573343 . - . ID=gene-NDY25_11235;Name=NDY25_11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11235 CP098604.1 Protein Homology CDS 2571709 2573343 . - 0 ID=cds-UUF04449.1;Parent=gene-NDY25_11235;Dbxref=NCBI_GP:UUF04449.1;Name=UUF04449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995434.1;locus_tag=NDY25_11235;product=TldD/PmbA family protein;protein_id=UUF04449.1;transl_table=11 CP098604.1 Genbank gene 2575338 2576966 . - . ID=gene-NDY25_11240;Name=NDY25_11240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11240 CP098604.1 Protein Homology CDS 2575338 2576966 . - 0 ID=cds-UUF04450.1;Parent=gene-NDY25_11240;Dbxref=NCBI_GP:UUF04450.1;Name=UUF04450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995434.1;locus_tag=NDY25_11240;product=TldD/PmbA family protein;protein_id=UUF04450.1;transl_table=11 CP098604.1 Genbank gene 2577168 2578124 . - . ID=gene-NDY25_11245;Name=NDY25_11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11245 CP098604.1 Protein Homology CDS 2577168 2578124 . - 0 ID=cds-UUF04451.1;Parent=gene-NDY25_11245;Dbxref=NCBI_GP:UUF04451.1;Name=UUF04451.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158343.1;locus_tag=NDY25_11245;product=AraC family transcriptional regulator;protein_id=UUF04451.1;transl_table=11 CP098604.1 Genbank gene 2578205 2579005 . + . ID=gene-NDY25_11250;Name=NDY25_11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11250 CP098604.1 Protein Homology CDS 2578205 2579005 . + 0 ID=cds-UUF04452.1;Parent=gene-NDY25_11250;Dbxref=NCBI_GP:UUF04452.1;Name=UUF04452.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024109.2;locus_tag=NDY25_11250;product=alpha/beta fold hydrolase;protein_id=UUF04452.1;transl_table=11 CP098604.1 Genbank gene 2579008 2579397 . + . ID=gene-NDY25_11255;Name=NDY25_11255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11255 CP098604.1 Protein Homology CDS 2579008 2579397 . + 0 ID=cds-UUF04625.1;Parent=gene-NDY25_11255;Dbxref=NCBI_GP:UUF04625.1;Name=UUF04625.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013304.2;locus_tag=NDY25_11255;product=MAPEG family protein;protein_id=UUF04625.1;transl_table=11 CP098604.1 Genbank gene 2579535 2581082 . + . ID=gene-NDY25_11260;Name=NDY25_11260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11260 CP098604.1 GeneMarkS-2+ CDS 2579535 2581082 . + 0 ID=cds-UUF04453.1;Parent=gene-NDY25_11260;Dbxref=NCBI_GP:UUF04453.1;Name=UUF04453.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11260;product=hypothetical protein;protein_id=UUF04453.1;transl_table=11 CP098604.1 Genbank gene 2581450 2581917 . - . ID=gene-NDY25_11265;Name=NDY25_11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11265 CP098604.1 Protein Homology CDS 2581450 2581917 . - 0 ID=cds-UUF04626.1;Parent=gene-NDY25_11265;Dbxref=NCBI_GP:UUF04626.1;Name=UUF04626.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157969.1;locus_tag=NDY25_11265;product=LuxR family transcriptional regulator;protein_id=UUF04626.1;transl_table=11 CP098604.1 Genbank gene 2582226 2583242 . - . ID=gene-NDY25_11270;Name=NDY25_11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11270 CP098604.1 Protein Homology CDS 2582226 2583242 . - 0 ID=cds-UUF04454.1;Parent=gene-NDY25_11270;Dbxref=NCBI_GP:UUF04454.1;Name=UUF04454.1;Ontology_term=GO:0005975,GO:0042132;gbkey=CDS;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506031.1;locus_tag=NDY25_11270;product=class 1 fructose-bisphosphatase;protein_id=UUF04454.1;transl_table=11 CP098604.1 Genbank gene 2583494 2584696 . - . ID=gene-NDY25_11275;Name=NDY25_11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11275 CP098604.1 Protein Homology CDS 2583494 2584696 . - 0 ID=cds-UUF04455.1;Parent=gene-NDY25_11275;Dbxref=NCBI_GP:UUF04455.1;Name=UUF04455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849085.1;locus_tag=NDY25_11275;product=aspartate/tyrosine/aromatic aminotransferase;protein_id=UUF04455.1;transl_table=11 CP098604.1 Genbank gene 2584853 2586988 . + . ID=gene-NDY25_11280;Name=NDY25_11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11280 CP098604.1 Protein Homology CDS 2584853 2586988 . + 0 ID=cds-UUF04456.1;Parent=gene-NDY25_11280;Dbxref=NCBI_GP:UUF04456.1;Name=UUF04456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112434.1;locus_tag=NDY25_11280;product=TonB-dependent receptor;protein_id=UUF04456.1;transl_table=11 CP098604.1 Genbank gene 2587137 2587436 . + . ID=gene-NDY25_11285;Name=NDY25_11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11285 CP098604.1 Protein Homology CDS 2587137 2587436 . + 0 ID=cds-UUF04457.1;Parent=gene-NDY25_11285;Dbxref=NCBI_GP:UUF04457.1;Name=UUF04457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450171.1;locus_tag=NDY25_11285;product=hypothetical protein;protein_id=UUF04457.1;transl_table=11 CP098604.1 Genbank gene 2587564 2587944 . + . ID=gene-NDY25_11290;Name=NDY25_11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11290 CP098604.1 Protein Homology CDS 2587564 2587944 . + 0 ID=cds-UUF04458.1;Parent=gene-NDY25_11290;Dbxref=NCBI_GP:UUF04458.1;Name=UUF04458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450226.1;locus_tag=NDY25_11290;product=cupin domain-containing protein;protein_id=UUF04458.1;transl_table=11 CP098604.1 Genbank gene 2588313 2588792 . + . ID=gene-NDY25_11295;Name=NDY25_11295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11295 CP098604.1 Protein Homology CDS 2588313 2588792 . + 0 ID=cds-UUF04459.1;Parent=gene-NDY25_11295;Dbxref=NCBI_GP:UUF04459.1;Name=UUF04459.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449979.1;locus_tag=NDY25_11295;product=hypothetical protein;protein_id=UUF04459.1;transl_table=11 CP098604.1 Genbank gene 2589032 2590561 . + . ID=gene-NDY25_11300;Name=NDY25_11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11300 CP098604.1 Protein Homology CDS 2589032 2590561 . + 0 ID=cds-UUF04460.1;Parent=gene-NDY25_11300;Dbxref=NCBI_GP:UUF04460.1;Name=UUF04460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035359.1;locus_tag=NDY25_11300;product=aldehyde dehydrogenase family protein;protein_id=UUF04460.1;transl_table=11 CP098604.1 Genbank pseudogene 2590611 2590730 . - . ID=gene-NDY25_11305;Name=NDY25_11305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11305;pseudo=true CP098604.1 Protein Homology CDS 2590611 2590730 . - 0 ID=cds-NDY25_11305;Parent=gene-NDY25_11305;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017460690.1;locus_tag=NDY25_11305;product=SDR family oxidoreductase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2590835 2591185 . + . ID=gene-NDY25_11310;Name=NDY25_11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11310 CP098604.1 GeneMarkS-2+ CDS 2590835 2591185 . + 0 ID=cds-UUF04461.1;Parent=gene-NDY25_11310;Dbxref=NCBI_GP:UUF04461.1;Name=UUF04461.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11310;product=hypothetical protein;protein_id=UUF04461.1;transl_table=11 CP098604.1 Genbank gene 2591218 2591664 . + . ID=gene-NDY25_11315;Name=NDY25_11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11315 CP098604.1 Protein Homology CDS 2591218 2591664 . + 0 ID=cds-UUF04462.1;Parent=gene-NDY25_11315;Dbxref=NCBI_GP:UUF04462.1;Name=UUF04462.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014173.2;locus_tag=NDY25_11315;product=Rrf2 family transcriptional regulator;protein_id=UUF04462.1;transl_table=11 CP098604.1 Genbank gene 2591808 2592452 . + . ID=gene-NDY25_11320;Name=NDY25_11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11320 CP098604.1 Protein Homology CDS 2591808 2592452 . + 0 ID=cds-UUF04463.1;Parent=gene-NDY25_11320;Dbxref=NCBI_GP:UUF04463.1;Name=UUF04463.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015411.2;locus_tag=NDY25_11320;product=NADPH-dependent F420 reductase;protein_id=UUF04463.1;transl_table=11 CP098604.1 Genbank gene 2592680 2593084 . + . ID=gene-NDY25_11325;Name=NDY25_11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11325 CP098604.1 Protein Homology CDS 2592680 2593084 . + 0 ID=cds-UUF04464.1;Parent=gene-NDY25_11325;Dbxref=NCBI_GP:UUF04464.1;Name=UUF04464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035360.1;locus_tag=NDY25_11325;product=DUF779 domain-containing protein;protein_id=UUF04464.1;transl_table=11 CP098604.1 Genbank gene 2593135 2593314 . - . ID=gene-NDY25_11330;Name=NDY25_11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11330 CP098604.1 Protein Homology CDS 2593135 2593314 . - 0 ID=cds-UUF04465.1;Parent=gene-NDY25_11330;Dbxref=NCBI_GP:UUF04465.1;Name=UUF04465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902913.1;locus_tag=NDY25_11330;product=hypothetical protein;protein_id=UUF04465.1;transl_table=11 CP098604.1 Genbank gene 2593466 2594413 . + . ID=gene-NDY25_11335;Name=NDY25_11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11335 CP098604.1 Protein Homology CDS 2593466 2594413 . + 0 ID=cds-UUF04466.1;Parent=gene-NDY25_11335;Dbxref=NCBI_GP:UUF04466.1;Name=UUF04466.1;Ontology_term=GO:0006303,GO:0045027;gbkey=CDS;go_function=DNA end binding|0045027||IEA;go_process=double-strand break repair via nonhomologous end joining|0006303||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157961.1;locus_tag=NDY25_11335;product=Ku protein;protein_id=UUF04466.1;transl_table=11 CP098604.1 Genbank gene 2594422 2597181 . + . ID=gene-NDY25_11340;Name=ligD;gbkey=Gene;gene=ligD;gene_biotype=protein_coding;locus_tag=NDY25_11340 CP098604.1 Protein Homology CDS 2594422 2597181 . + 0 ID=cds-UUF04467.1;Parent=gene-NDY25_11340;Dbxref=NCBI_GP:UUF04467.1;Name=UUF04467.1;Ontology_term=GO:0006303;gbkey=CDS;gene=ligD;go_process=double-strand break repair via nonhomologous end joining|0006303||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449984.1;locus_tag=NDY25_11340;product=DNA ligase D;protein_id=UUF04467.1;transl_table=11 CP098604.1 Genbank gene 2597226 2597302 . + . ID=gene-NDY25_11345;Name=NDY25_11345;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_11345 CP098604.1 cmsearch ncRNA 2597226 2597302 . + . ID=rna-NDY25_11345;Parent=gene-NDY25_11345;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_11345;product=sX9 sRNA CP098604.1 cmsearch exon 2597226 2597302 . + . ID=exon-NDY25_11345-1;Parent=rna-NDY25_11345;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_11345;product=sX9 sRNA CP098604.1 Genbank gene 2597679 2598839 . - . ID=gene-NDY25_11350;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=NDY25_11350 CP098604.1 Protein Homology CDS 2597679 2598839 . - 0 ID=cds-UUF04468.1;Parent=gene-NDY25_11350;Dbxref=NCBI_GP:UUF04468.1;Name=UUF04468.1;Ontology_term=GO:0006089,GO:0004457,GO:0010181;gbkey=CDS;gene=lldD;go_function=lactate dehydrogenase activity|0004457||IEA,FMN binding|0010181||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573929.1;locus_tag=NDY25_11350;product=FMN-dependent L-lactate dehydrogenase LldD;protein_id=UUF04468.1;transl_table=11 CP098604.1 Genbank gene 2599073 2600590 . - . ID=gene-NDY25_11355;Name=NDY25_11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11355 CP098604.1 Protein Homology CDS 2599073 2600590 . - 0 ID=cds-UUF04469.1;Parent=gene-NDY25_11355;Dbxref=NCBI_GP:UUF04469.1;Name=UUF04469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411239.1;locus_tag=NDY25_11355;product=carotenoid oxygenase family protein;protein_id=UUF04469.1;transl_table=11 CP098604.1 Genbank gene 2600620 2601042 . - . ID=gene-NDY25_11360;Name=NDY25_11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11360 CP098604.1 Protein Homology CDS 2600620 2601042 . - 0 ID=cds-UUF04470.1;Parent=gene-NDY25_11360;Dbxref=NCBI_GP:UUF04470.1;Name=UUF04470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996266.1;locus_tag=NDY25_11360;product=DUF2141 domain-containing protein;protein_id=UUF04470.1;transl_table=11 CP098604.1 Genbank gene 2601260 2601823 . - . ID=gene-NDY25_11365;Name=NDY25_11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11365 CP098604.1 Protein Homology CDS 2601260 2601823 . - 0 ID=cds-UUF04471.1;Parent=gene-NDY25_11365;Dbxref=NCBI_GP:UUF04471.1;Name=UUF04471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165246.1;locus_tag=NDY25_11365;product=phosphatidylethanolamine N-methyltransferase family protein;protein_id=UUF04471.1;transl_table=11 CP098604.1 Genbank gene 2601856 2603082 . + . ID=gene-NDY25_11370;Name=NDY25_11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11370 CP098604.1 Protein Homology CDS 2601856 2603082 . + 0 ID=cds-UUF04472.1;Parent=gene-NDY25_11370;Dbxref=NCBI_GP:UUF04472.1;Name=UUF04472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964736.1;locus_tag=NDY25_11370;product=sensor histidine kinase;protein_id=UUF04472.1;transl_table=11 CP098604.1 Genbank gene 2603079 2603711 . + . ID=gene-NDY25_11375;Name=NDY25_11375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11375 CP098604.1 Protein Homology CDS 2603079 2603711 . + 0 ID=cds-UUF04473.1;Parent=gene-NDY25_11375;Dbxref=NCBI_GP:UUF04473.1;Name=UUF04473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161012.1;locus_tag=NDY25_11375;product=response regulator transcription factor;protein_id=UUF04473.1;transl_table=11 CP098604.1 Genbank pseudogene 2604454 2604654 . + . ID=gene-NDY25_11380;Name=NDY25_11380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11380;pseudo=true CP098604.1 Protein Homology CDS 2604454 2604654 . + 0 ID=cds-NDY25_11380;Parent=gene-NDY25_11380;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154856.1;locus_tag=NDY25_11380;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2605054 2605446 . - . ID=gene-NDY25_11385;Name=NDY25_11385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11385 CP098604.1 Protein Homology CDS 2605054 2605446 . - 0 ID=cds-UUF04474.1;Parent=gene-NDY25_11385;Dbxref=NCBI_GP:UUF04474.1;Name=UUF04474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050117.1;locus_tag=NDY25_11385;product=hypothetical protein;protein_id=UUF04474.1;transl_table=11 CP098604.1 Genbank gene 2605443 2608793 . - . ID=gene-NDY25_11390;Name=NDY25_11390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11390 CP098604.1 Protein Homology CDS 2605443 2608793 . - 0 ID=cds-UUF04475.1;Parent=gene-NDY25_11390;Dbxref=NCBI_GP:UUF04475.1;Name=UUF04475.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154859.1;locus_tag=NDY25_11390;product=winged helix-turn-helix domain-containing protein;protein_id=UUF04475.1;transl_table=11 CP098604.1 Genbank pseudogene 2609087 2610294 . + . ID=gene-NDY25_11395;Name=NDY25_11395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11395;pseudo=true CP098604.1 Protein Homology CDS 2609087 2610294 . + 0 ID=cds-NDY25_11395;Parent=gene-NDY25_11395;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014506054.1;locus_tag=NDY25_11395;product=trans-2-enoyl-CoA reductase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2610528 2610815 . + . ID=gene-NDY25_11400;Name=NDY25_11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11400 CP098604.1 Protein Homology CDS 2610528 2610815 . + 0 ID=cds-UUF00640.1;Parent=gene-NDY25_11400;Dbxref=NCBI_GP:UUF00640.1;Name=UUF00640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301942.1;locus_tag=NDY25_11400;product=hypothetical protein;protein_id=UUF00640.1;transl_table=11 CP098604.1 Genbank gene 2611009 2612031 . - . ID=gene-NDY25_11405;Name=NDY25_11405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11405 CP098604.1 Protein Homology CDS 2611009 2612031 . - 0 ID=cds-UUF00641.1;Parent=gene-NDY25_11405;Dbxref=NCBI_GP:UUF00641.1;Name=UUF00641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970754.1;locus_tag=NDY25_11405;product=sugar kinase;protein_id=UUF00641.1;transl_table=11 CP098604.1 Genbank gene 2612319 2615066 . + . ID=gene-NDY25_11410;Name=NDY25_11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11410 CP098604.1 Protein Homology CDS 2612319 2615066 . + 0 ID=cds-UUF00642.1;Parent=gene-NDY25_11410;Dbxref=NCBI_GP:UUF00642.1;Name=UUF00642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970752.1;locus_tag=NDY25_11410;product=TonB-dependent receptor;protein_id=UUF00642.1;transl_table=11 CP098604.1 Genbank gene 2615299 2618499 . + . ID=gene-NDY25_11415;Name=NDY25_11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11415 CP098604.1 Protein Homology CDS 2615299 2618499 . + 0 ID=cds-UUF00643.1;Parent=gene-NDY25_11415;Dbxref=NCBI_GP:UUF00643.1;Name=UUF00643.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237088.1;locus_tag=NDY25_11415;product=TonB-dependent receptor;protein_id=UUF00643.1;transl_table=11 CP098604.1 Genbank gene 2618512 2619489 . + . ID=gene-NDY25_11420;Name=NDY25_11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11420 CP098604.1 Protein Homology CDS 2618512 2619489 . + 0 ID=cds-UUF00644.1;Parent=gene-NDY25_11420;Dbxref=NCBI_GP:UUF00644.1;Name=UUF00644.1;Ontology_term=GO:0042545,GO:0030599;gbkey=CDS;go_function=pectinesterase activity|0030599||IEA;go_process=cell wall modification|0042545||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436943.1;locus_tag=NDY25_11420;product=pectinesterase family protein;protein_id=UUF00644.1;transl_table=11 CP098604.1 Genbank gene 2619489 2620517 . + . ID=gene-NDY25_11425;Name=pelA;gbkey=Gene;gene=pelA;gene_biotype=protein_coding;locus_tag=NDY25_11425 CP098604.1 Protein Homology CDS 2619489 2620517 . + 0 ID=cds-UUF00645.1;Parent=gene-NDY25_11425;Dbxref=NCBI_GP:UUF00645.1;Name=UUF00645.1;Ontology_term=GO:0045490,GO:0030570;gbkey=CDS;gene=pelA;go_function=pectate lyase activity|0030570||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996291.1;locus_tag=NDY25_11425;product=pectate lyase;protein_id=UUF00645.1;transl_table=11 CP098604.1 Genbank gene 2620725 2624573 . + . ID=gene-NDY25_11430;Name=NDY25_11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11430 CP098604.1 Protein Homology CDS 2620725 2624573 . + 0 ID=cds-UUF04627.1;Parent=gene-NDY25_11430;Dbxref=NCBI_GP:UUF04627.1;Name=UUF04627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160455.1;locus_tag=NDY25_11430;product=LamG domain-containing protein;protein_id=UUF04627.1;transl_table=11 CP098604.1 Genbank gene 2624760 2624969 . + . ID=gene-NDY25_11435;Name=NDY25_11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11435 CP098604.1 Protein Homology CDS 2624760 2624969 . + 0 ID=cds-UUF00646.1;Parent=gene-NDY25_11435;Dbxref=NCBI_GP:UUF00646.1;Name=UUF00646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159762.1;locus_tag=NDY25_11435;product=hypothetical protein;protein_id=UUF00646.1;transl_table=11 CP098604.1 Genbank gene 2625030 2625413 . + . ID=gene-NDY25_11440;Name=NDY25_11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11440 CP098604.1 Protein Homology CDS 2625030 2625413 . + 0 ID=cds-UUF00647.1;Parent=gene-NDY25_11440;Dbxref=NCBI_GP:UUF00647.1;Name=UUF00647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050124.1;locus_tag=NDY25_11440;product=hypothetical protein;protein_id=UUF00647.1;transl_table=11 CP098604.1 Genbank gene 2625467 2625667 . + . ID=gene-NDY25_11445;Name=NDY25_11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11445 CP098604.1 Protein Homology CDS 2625467 2625667 . + 0 ID=cds-UUF00648.1;Parent=gene-NDY25_11445;Dbxref=NCBI_GP:UUF00648.1;Name=UUF00648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471549.1;locus_tag=NDY25_11445;product=KTSC domain-containing protein;protein_id=UUF00648.1;transl_table=11 CP098604.1 Genbank gene 2626015 2626539 . + . ID=gene-NDY25_11450;Name=NDY25_11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11450 CP098604.1 Protein Homology CDS 2626015 2626539 . + 0 ID=cds-UUF00649.1;Parent=gene-NDY25_11450;Dbxref=NCBI_GP:UUF00649.1;Name=UUF00649.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015332.2;locus_tag=NDY25_11450;product=hypothetical protein;protein_id=UUF00649.1;transl_table=11 CP098604.1 Genbank gene 2626892 2627356 . + . ID=gene-NDY25_11455;Name=NDY25_11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11455 CP098604.1 Protein Homology CDS 2626892 2627356 . + 0 ID=cds-UUF00650.1;Parent=gene-NDY25_11455;Dbxref=NCBI_GP:UUF00650.1;Name=UUF00650.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025056.2;locus_tag=NDY25_11455;product=toll/interleukin-1 receptor domain-containing protein;protein_id=UUF00650.1;transl_table=11 CP098604.1 Genbank gene 2627433 2628176 . + . ID=gene-NDY25_11460;Name=NDY25_11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11460 CP098604.1 Protein Homology CDS 2627433 2628176 . + 0 ID=cds-UUF00651.1;Parent=gene-NDY25_11460;Dbxref=NCBI_GP:UUF00651.1;Name=UUF00651.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025713.2;locus_tag=NDY25_11460;product=abortive infection family protein;protein_id=UUF00651.1;transl_table=11 CP098604.1 Genbank gene 2628244 2628954 . + . ID=gene-NDY25_11465;Name=NDY25_11465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11465 CP098604.1 GeneMarkS-2+ CDS 2628244 2628954 . + 0 ID=cds-UUF00652.1;Parent=gene-NDY25_11465;Dbxref=NCBI_GP:UUF00652.1;Name=UUF00652.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11465;product=hypothetical protein;protein_id=UUF00652.1;transl_table=11 CP098604.1 Genbank gene 2629250 2630701 . - . ID=gene-NDY25_11470;Name=NDY25_11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11470 CP098604.1 Protein Homology CDS 2629250 2630701 . - 0 ID=cds-UUF00653.1;Parent=gene-NDY25_11470;Dbxref=NCBI_GP:UUF00653.1;Name=UUF00653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436950.1;locus_tag=NDY25_11470;product=hypothetical protein;protein_id=UUF00653.1;transl_table=11 CP098604.1 Genbank gene 2630698 2631387 . - . ID=gene-NDY25_11475;Name=NDY25_11475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11475 CP098604.1 Protein Homology CDS 2630698 2631387 . - 0 ID=cds-UUF00654.1;Parent=gene-NDY25_11475;Dbxref=NCBI_GP:UUF00654.1;Name=UUF00654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088956.1;locus_tag=NDY25_11475;product=hypothetical protein;protein_id=UUF00654.1;transl_table=11 CP098604.1 Genbank gene 2631906 2632256 . + . ID=gene-NDY25_11480;Name=NDY25_11480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11480 CP098604.1 Protein Homology CDS 2631906 2632256 . + 0 ID=cds-UUF00655.1;Parent=gene-NDY25_11480;Dbxref=NCBI_GP:UUF00655.1;Name=UUF00655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913224.1;locus_tag=NDY25_11480;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF00655.1;transl_table=11 CP098604.1 Genbank gene 2632368 2632604 . + . ID=gene-NDY25_11485;Name=NDY25_11485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11485 CP098604.1 Protein Homology CDS 2632368 2632604 . + 0 ID=cds-UUF00656.1;Parent=gene-NDY25_11485;Dbxref=NCBI_GP:UUF00656.1;Name=UUF00656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448538.1;locus_tag=NDY25_11485;product=hypothetical protein;protein_id=UUF00656.1;transl_table=11 CP098604.1 Genbank gene 2632665 2633351 . - . ID=gene-NDY25_11490;Name=NDY25_11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11490 CP098604.1 Protein Homology CDS 2632665 2633351 . - 0 ID=cds-UUF00657.1;Parent=gene-NDY25_11490;Dbxref=NCBI_GP:UUF00657.1;Name=UUF00657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014645741.1;locus_tag=NDY25_11490;product=lytic enzyme;protein_id=UUF00657.1;transl_table=11 CP098604.1 Genbank gene 2633755 2634786 . - . ID=gene-NDY25_11495;Name=NDY25_11495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11495 CP098604.1 Protein Homology CDS 2633755 2634786 . - 0 ID=cds-UUF00658.1;Parent=gene-NDY25_11495;Dbxref=NCBI_GP:UUF00658.1;Name=UUF00658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348379.1;locus_tag=NDY25_11495;product=hypothetical protein;protein_id=UUF00658.1;transl_table=11 CP098604.1 Genbank gene 2635283 2636088 . - . ID=gene-NDY25_11500;Name=NDY25_11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11500 CP098604.1 Protein Homology CDS 2635758 2636088 . - 0 ID=cds-UUF00659.1;Parent=gene-NDY25_11500;Dbxref=NCBI_GP:UUF00659.1;Name=UUF00659.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802850.1;locus_tag=NDY25_11500;product=IS5 family transposase;protein_id=UUF00659.1;transl_table=11 CP098604.1 Protein Homology CDS 2635283 2635758 . - 2 ID=cds-UUF00659.1;Parent=gene-NDY25_11500;Dbxref=NCBI_GP:UUF00659.1;Name=UUF00659.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802850.1;locus_tag=NDY25_11500;product=IS5 family transposase;protein_id=UUF00659.1;transl_table=11 CP098604.1 Genbank pseudogene 2636254 2636603 . + . ID=gene-NDY25_11505;Name=NDY25_11505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11505;pseudo=true CP098604.1 Protein Homology CDS 2636254 2636603 . + 0 ID=cds-NDY25_11505;Parent=gene-NDY25_11505;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159809.1;locus_tag=NDY25_11505;product=type I toxin-antitoxin system SymE family toxin;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2636714 2636941 . + . ID=gene-NDY25_11510;Name=NDY25_11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11510 CP098604.1 Protein Homology CDS 2636714 2636941 . + 0 ID=cds-UUF00660.1;Parent=gene-NDY25_11510;Dbxref=NCBI_GP:UUF00660.1;Name=UUF00660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448532.1;locus_tag=NDY25_11510;product=hypothetical protein;protein_id=UUF00660.1;transl_table=11 CP098604.1 Genbank gene 2637124 2637327 . + . ID=gene-NDY25_11515;Name=NDY25_11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11515 CP098604.1 GeneMarkS-2+ CDS 2637124 2637327 . + 0 ID=cds-UUF00661.1;Parent=gene-NDY25_11515;Dbxref=NCBI_GP:UUF00661.1;Name=UUF00661.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11515;product=hypothetical protein;protein_id=UUF00661.1;transl_table=11 CP098604.1 Genbank gene 2637273 2637773 . + . ID=gene-NDY25_11520;Name=NDY25_11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11520 CP098604.1 Protein Homology CDS 2637273 2637773 . + 0 ID=cds-UUF04628.1;Parent=gene-NDY25_11520;Dbxref=NCBI_GP:UUF04628.1;Name=UUF04628.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019408.2;locus_tag=NDY25_11520;product=DUF1629 domain-containing protein;protein_id=UUF04628.1;transl_table=11 CP098604.1 Genbank gene 2637979 2638563 . + . ID=gene-NDY25_11525;Name=NDY25_11525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11525 CP098604.1 Protein Homology CDS 2637979 2638563 . + 0 ID=cds-UUF00662.1;Parent=gene-NDY25_11525;Dbxref=NCBI_GP:UUF00662.1;Name=UUF00662.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019408.2;locus_tag=NDY25_11525;product=DUF1629 domain-containing protein;protein_id=UUF00662.1;transl_table=11 CP098604.1 Genbank gene 2638668 2641496 . + . ID=gene-NDY25_11530;Name=NDY25_11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11530 CP098604.1 Protein Homology CDS 2638668 2641496 . + 0 ID=cds-UUF00663.1;Parent=gene-NDY25_11530;Dbxref=NCBI_GP:UUF00663.1;Name=UUF00663.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025769.2;locus_tag=NDY25_11530;product=AHH domain-containing protein;protein_id=UUF00663.1;transl_table=11 CP098604.1 Genbank gene 2641541 2641801 . - . ID=gene-NDY25_11535;Name=NDY25_11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11535 CP098604.1 GeneMarkS-2+ CDS 2641541 2641801 . - 0 ID=cds-UUF00664.1;Parent=gene-NDY25_11535;Dbxref=NCBI_GP:UUF00664.1;Name=UUF00664.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11535;product=hypothetical protein;protein_id=UUF00664.1;transl_table=11 CP098604.1 Genbank gene 2641805 2642452 . - . ID=gene-NDY25_11540;Name=NDY25_11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11540 CP098604.1 Protein Homology CDS 2641805 2642452 . - 0 ID=cds-UUF00665.1;Parent=gene-NDY25_11540;Dbxref=NCBI_GP:UUF00665.1;Name=UUF00665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448540.1;locus_tag=NDY25_11540;product=hypothetical protein;protein_id=UUF00665.1;transl_table=11 CP098604.1 Genbank gene 2642744 2643298 . - . ID=gene-NDY25_11545;Name=NDY25_11545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11545 CP098604.1 Protein Homology CDS 2642744 2643298 . - 0 ID=cds-UUF00666.1;Parent=gene-NDY25_11545;Dbxref=NCBI_GP:UUF00666.1;Name=UUF00666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011039256.1;locus_tag=NDY25_11545;product=hypothetical protein;protein_id=UUF00666.1;transl_table=11 CP098604.1 Genbank gene 2643539 2644647 . - . ID=gene-NDY25_11550;Name=NDY25_11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11550 CP098604.1 Protein Homology CDS 2644386 2644647 . - 0 ID=cds-UUF00667.1;Parent=gene-NDY25_11550;Dbxref=NCBI_GP:UUF00667.1;Name=UUF00667.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_11550;product=IS3 family transposase;protein_id=UUF00667.1;transl_table=11 CP098604.1 Protein Homology CDS 2643539 2644386 . - 2 ID=cds-UUF00667.1;Parent=gene-NDY25_11550;Dbxref=NCBI_GP:UUF00667.1;Name=UUF00667.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_11550;product=IS3 family transposase;protein_id=UUF00667.1;transl_table=11 CP098604.1 Genbank pseudogene 2645279 2645383 . + . ID=gene-NDY25_11555;Name=NDY25_11555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11555;pseudo=true CP098604.1 Protein Homology CDS 2645279 2645383 . + 0 ID=cds-NDY25_11555;Parent=gene-NDY25_11555;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016430.2;locus_tag=NDY25_11555;product=RNA polymerase sigma factor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2645425 2645718 . + . ID=gene-NDY25_11560;Name=NDY25_11560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11560 CP098604.1 Protein Homology CDS 2645425 2645718 . + 0 ID=cds-UUF04629.1;Parent=gene-NDY25_11560;Dbxref=NCBI_GP:UUF04629.1;Name=UUF04629.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019886.2;locus_tag=NDY25_11560;product=hypothetical protein;protein_id=UUF04629.1;transl_table=11 CP098604.1 Genbank gene 2645851 2646156 . - . ID=gene-NDY25_11565;Name=NDY25_11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11565 CP098604.1 GeneMarkS-2+ CDS 2645851 2646156 . - 0 ID=cds-UUF00668.1;Parent=gene-NDY25_11565;Dbxref=NCBI_GP:UUF00668.1;Name=UUF00668.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11565;product=hypothetical protein;protein_id=UUF00668.1;transl_table=11 CP098604.1 Genbank gene 2647387 2647611 . + . ID=gene-NDY25_11570;Name=NDY25_11570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11570 CP098604.1 GeneMarkS-2+ CDS 2647387 2647611 . + 0 ID=cds-UUF00669.1;Parent=gene-NDY25_11570;Dbxref=NCBI_GP:UUF00669.1;Name=UUF00669.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11570;product=hypothetical protein;protein_id=UUF00669.1;transl_table=11 CP098604.1 Genbank gene 2647974 2648216 . - . ID=gene-NDY25_11575;Name=NDY25_11575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11575 CP098604.1 GeneMarkS-2+ CDS 2647974 2648216 . - 0 ID=cds-UUF00670.1;Parent=gene-NDY25_11575;Dbxref=NCBI_GP:UUF00670.1;Name=UUF00670.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11575;product=hypothetical protein;protein_id=UUF00670.1;transl_table=11 CP098604.1 Genbank gene 2648578 2649147 . + . ID=gene-NDY25_11580;Name=NDY25_11580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11580 CP098604.1 GeneMarkS-2+ CDS 2648578 2649147 . + 0 ID=cds-UUF00671.1;Parent=gene-NDY25_11580;Dbxref=NCBI_GP:UUF00671.1;Name=UUF00671.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_11580;product=hypothetical protein;protein_id=UUF00671.1;transl_table=11 CP098604.1 Genbank gene 2649442 2649933 . - . ID=gene-NDY25_11585;Name=NDY25_11585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11585 CP098604.1 Protein Homology CDS 2649442 2649933 . - 0 ID=cds-UUF00672.1;Parent=gene-NDY25_11585;Dbxref=NCBI_GP:UUF00672.1;Name=UUF00672.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012993.2;locus_tag=NDY25_11585;product=hypothetical protein;protein_id=UUF00672.1;transl_table=11 CP098604.1 Genbank gene 2650242 2651501 . - . ID=gene-NDY25_11590;Name=NDY25_11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11590 CP098604.1 Protein Homology CDS 2650242 2651501 . - 0 ID=cds-UUF00673.1;Parent=gene-NDY25_11590;Dbxref=NCBI_GP:UUF00673.1;Name=UUF00673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996511.1;locus_tag=NDY25_11590;product=hypothetical protein;protein_id=UUF00673.1;transl_table=11 CP098604.1 Genbank gene 2651784 2652449 . - . ID=gene-NDY25_11595;Name=NDY25_11595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11595 CP098604.1 Protein Homology CDS 2651784 2652449 . - 0 ID=cds-UUF00674.1;Parent=gene-NDY25_11595;Dbxref=NCBI_GP:UUF00674.1;Name=UUF00674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901251.1;locus_tag=NDY25_11595;product=hypothetical protein;protein_id=UUF00674.1;transl_table=11 CP098604.1 Genbank gene 2652730 2653350 . + . ID=gene-NDY25_11600;Name=NDY25_11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11600 CP098604.1 Protein Homology CDS 2652730 2653350 . + 0 ID=cds-UUF00675.1;Parent=gene-NDY25_11600;Dbxref=NCBI_GP:UUF00675.1;Name=UUF00675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901250.1;locus_tag=NDY25_11600;product=DUF4142 domain-containing protein;protein_id=UUF00675.1;transl_table=11 CP098604.1 Genbank gene 2653429 2653728 . - . ID=gene-NDY25_11605;Name=NDY25_11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11605 CP098604.1 Protein Homology CDS 2653429 2653728 . - 0 ID=cds-UUF00676.1;Parent=gene-NDY25_11605;Dbxref=NCBI_GP:UUF00676.1;Name=UUF00676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009578834.1;locus_tag=NDY25_11605;product=hypothetical protein;protein_id=UUF00676.1;transl_table=11 CP098604.1 Genbank gene 2654562 2657678 . + . ID=gene-NDY25_11610;Name=NDY25_11610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11610 CP098604.1 Protein Homology CDS 2654562 2657678 . + 0 ID=cds-UUF00677.1;Parent=gene-NDY25_11610;Dbxref=NCBI_GP:UUF00677.1;Name=UUF00677.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574465.1;locus_tag=NDY25_11610;product=DUF3416 domain-containing protein;protein_id=UUF00677.1;transl_table=11 CP098604.1 Genbank gene 2657675 2661025 . + . ID=gene-NDY25_11615;Name=treS;gbkey=Gene;gene=treS;gene_biotype=protein_coding;locus_tag=NDY25_11615 CP098604.1 Protein Homology CDS 2657675 2661025 . + 0 ID=cds-UUF00678.1;Parent=gene-NDY25_11615;Dbxref=NCBI_GP:UUF00678.1;Name=UUF00678.1;Ontology_term=GO:0005991,GO:0047471;gbkey=CDS;gene=treS;go_function=maltose alpha-D-glucosyltransferase activity|0047471||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451143.1;locus_tag=NDY25_11615;product=maltose alpha-D-glucosyltransferase;protein_id=UUF00678.1;transl_table=11 CP098604.1 Genbank gene 2661037 2663220 . + . ID=gene-NDY25_11620;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=NDY25_11620 CP098604.1 Protein Homology CDS 2661037 2663220 . + 0 ID=cds-UUF04630.1;Parent=gene-NDY25_11620;Dbxref=NCBI_GP:UUF04630.1;Name=UUF04630.1;Ontology_term=GO:0005975,GO:0005978,GO:0003844,GO:0004553,GO:0043169;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA,hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,cation binding|0043169||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302960.1;locus_tag=NDY25_11620;product=1%2C4-alpha-glucan branching protein GlgB;protein_id=UUF04630.1;transl_table=11 CP098604.1 Genbank gene 2663612 2663911 . + . ID=gene-NDY25_11625;Name=NDY25_11625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11625 CP098604.1 Protein Homology CDS 2663612 2663911 . + 0 ID=cds-UUF00679.1;Parent=gene-NDY25_11625;Dbxref=NCBI_GP:UUF00679.1;Name=UUF00679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451145.1;locus_tag=NDY25_11625;product=hypothetical protein;protein_id=UUF00679.1;transl_table=11 CP098604.1 Genbank gene 2663901 2664173 . + . ID=gene-NDY25_11630;Name=NDY25_11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11630 CP098604.1 Protein Homology CDS 2663901 2664173 . + 0 ID=cds-UUF00680.1;Parent=gene-NDY25_11630;Dbxref=NCBI_GP:UUF00680.1;Name=UUF00680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035396.1;locus_tag=NDY25_11630;product=hypothetical protein;protein_id=UUF00680.1;transl_table=11 CP098604.1 Genbank gene 2664170 2665723 . + . ID=gene-NDY25_11635;Name=NDY25_11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11635 CP098604.1 Protein Homology CDS 2664170 2665723 . + 0 ID=cds-UUF00681.1;Parent=gene-NDY25_11635;Dbxref=NCBI_GP:UUF00681.1;Name=UUF00681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451147.1;locus_tag=NDY25_11635;product=PepSY domain-containing protein;protein_id=UUF00681.1;transl_table=11 CP098604.1 Genbank gene 2665895 2666359 . + . ID=gene-NDY25_11640;Name=NDY25_11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11640 CP098604.1 Protein Homology CDS 2665895 2666359 . + 0 ID=cds-UUF00682.1;Parent=gene-NDY25_11640;Dbxref=NCBI_GP:UUF00682.1;Name=UUF00682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451148.1;locus_tag=NDY25_11640;product=metallophosphatase family protein;protein_id=UUF00682.1;transl_table=11 CP098604.1 Genbank gene 2666646 2667794 . + . ID=gene-NDY25_11645;Name=NDY25_11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11645 CP098604.1 Protein Homology CDS 2666646 2667794 . + 0 ID=cds-UUF00683.1;Parent=gene-NDY25_11645;Dbxref=NCBI_GP:UUF00683.1;Name=UUF00683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451149.1;locus_tag=NDY25_11645;product=aldo/keto reductase;protein_id=UUF00683.1;transl_table=11 CP098604.1 Genbank gene 2668319 2669266 . - . ID=gene-NDY25_11650;Name=NDY25_11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11650 CP098604.1 Protein Homology CDS 2668319 2669266 . - 0 ID=cds-UUF00684.1;Parent=gene-NDY25_11650;Dbxref=NCBI_GP:UUF00684.1;Name=UUF00684.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989697.1;locus_tag=NDY25_11650;product=rhamnogalacturonan acetylesterase;protein_id=UUF00684.1;transl_table=11 CP098604.1 Genbank pseudogene 2669468 2671092 . - . ID=gene-NDY25_11655;Name=NDY25_11655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11655;pseudo=true CP098604.1 Protein Homology CDS 2669468 2671092 . - 0 ID=cds-NDY25_11655;Parent=gene-NDY25_11655;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912119.1;locus_tag=NDY25_11655;product=carboxylesterase/lipase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2671089 2672198 . - . ID=gene-NDY25_11660;Name=NDY25_11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11660 CP098604.1 Protein Homology CDS 2671089 2672198 . - 0 ID=cds-UUF00685.1;Parent=gene-NDY25_11660;Dbxref=NCBI_GP:UUF00685.1;Name=UUF00685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968140.1;locus_tag=NDY25_11660;product=alpha/beta hydrolase;protein_id=UUF00685.1;transl_table=11 CP098604.1 Genbank gene 2672338 2673159 . + . ID=gene-NDY25_11665;Name=NDY25_11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11665 CP098604.1 Protein Homology CDS 2672338 2673159 . + 0 ID=cds-UUF00686.1;Parent=gene-NDY25_11665;Dbxref=NCBI_GP:UUF00686.1;Name=UUF00686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932540.1;locus_tag=NDY25_11665;product=2-keto-4-pentenoate hydratase;protein_id=UUF00686.1;transl_table=11 CP098604.1 Genbank gene 2673196 2674194 . + . ID=gene-NDY25_11670;Name=NDY25_11670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11670 CP098604.1 Protein Homology CDS 2673196 2674194 . + 0 ID=cds-UUF00687.1;Parent=gene-NDY25_11670;Dbxref=NCBI_GP:UUF00687.1;Name=UUF00687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850027.1;locus_tag=NDY25_11670;product=TRAP transporter substrate-binding protein;protein_id=UUF00687.1;transl_table=11 CP098604.1 Genbank gene 2674205 2674726 . + . ID=gene-NDY25_11675;Name=NDY25_11675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11675 CP098604.1 Protein Homology CDS 2674205 2674726 . + 0 ID=cds-UUF00688.1;Parent=gene-NDY25_11675;Dbxref=NCBI_GP:UUF00688.1;Name=UUF00688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912128.1;locus_tag=NDY25_11675;product=TRAP transporter small permease;protein_id=UUF00688.1;transl_table=11 CP098604.1 Genbank gene 2674726 2676009 . + . ID=gene-NDY25_11680;Name=NDY25_11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11680 CP098604.1 Protein Homology CDS 2674726 2676009 . + 0 ID=cds-UUF00689.1;Parent=gene-NDY25_11680;Dbxref=NCBI_GP:UUF00689.1;Name=UUF00689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489871.1;locus_tag=NDY25_11680;product=TRAP transporter large permease;protein_id=UUF00689.1;transl_table=11 CP098604.1 Genbank gene 2676247 2677830 . + . ID=gene-NDY25_11685;Name=NDY25_11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11685 CP098604.1 Protein Homology CDS 2676247 2677830 . + 0 ID=cds-UUF00690.1;Parent=gene-NDY25_11685;Dbxref=NCBI_GP:UUF00690.1;Name=UUF00690.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345889.1;locus_tag=NDY25_11685;product=family 43 glycosylhydrolase;protein_id=UUF00690.1;transl_table=11 CP098604.1 Genbank gene 2677971 2679029 . + . ID=gene-NDY25_11690;Name=NDY25_11690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11690 CP098604.1 Protein Homology CDS 2677971 2679029 . + 0 ID=cds-UUF00691.1;Parent=gene-NDY25_11690;Dbxref=NCBI_GP:UUF00691.1;Name=UUF00691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158097.1;locus_tag=NDY25_11690;product=LacI family DNA-binding transcriptional regulator;protein_id=UUF00691.1;transl_table=11 CP098604.1 Genbank gene 2679567 2680421 . + . ID=gene-NDY25_11695;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=protein_coding;locus_tag=NDY25_11695 CP098604.1 Protein Homology CDS 2679567 2680421 . + 0 ID=cds-UUF00692.1;Parent=gene-NDY25_11695;Dbxref=NCBI_GP:UUF00692.1;Name=UUF00692.1;Ontology_term=GO:0045490,GO:0008697;gbkey=CDS;gene=kduI;go_function=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity|0008697||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991266.1;locus_tag=NDY25_11695;product=5-dehydro-4-deoxy-D-glucuronate isomerase;protein_id=UUF00692.1;transl_table=11 CP098604.1 Genbank gene 2680581 2681336 . + . ID=gene-NDY25_11700;Name=kduD;gbkey=Gene;gene=kduD;gene_biotype=protein_coding;locus_tag=NDY25_11700 CP098604.1 Protein Homology CDS 2680581 2681336 . + 0 ID=cds-UUF00693.1;Parent=gene-NDY25_11700;Dbxref=NCBI_GP:UUF00693.1;Name=UUF00693.1;Ontology_term=GO:0000272,GO:0008678,GO:0016491,GO:0051287;gbkey=CDS;gene=kduD;go_function=2-deoxy-D-gluconate 3-dehydrogenase activity|0008678||IEA,oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035409.1;locus_tag=NDY25_11700;product=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;protein_id=UUF00693.1;transl_table=11 CP098604.1 Genbank gene 2681570 2682235 . + . ID=gene-NDY25_11705;Name=NDY25_11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11705 CP098604.1 Protein Homology CDS 2681570 2682235 . + 0 ID=cds-UUF00694.1;Parent=gene-NDY25_11705;Dbxref=NCBI_GP:UUF00694.1;Name=UUF00694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436974.1;locus_tag=NDY25_11705;product=RpiB/LacA/LacB family sugar-phosphate isomerase;protein_id=UUF00694.1;transl_table=11 CP098604.1 Genbank gene 2682474 2683595 . + . ID=gene-NDY25_11710;Name=NDY25_11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11710 CP098604.1 Protein Homology CDS 2682474 2683595 . + 0 ID=cds-UUF00695.1;Parent=gene-NDY25_11710;Dbxref=NCBI_GP:UUF00695.1;Name=UUF00695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452145.1;locus_tag=NDY25_11710;product=GDSL-type esterase/lipase family protein;protein_id=UUF00695.1;transl_table=11 CP098604.1 Genbank gene 2683665 2684948 . - . ID=gene-NDY25_11715;Name=NDY25_11715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11715 CP098604.1 Protein Homology CDS 2683665 2684948 . - 0 ID=cds-UUF00696.1;Parent=gene-NDY25_11715;Dbxref=NCBI_GP:UUF00696.1;Name=UUF00696.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019421.2;locus_tag=NDY25_11715;product=type II toxin-antitoxin system HipA family toxin;protein_id=UUF00696.1;transl_table=11 CP098604.1 Genbank gene 2684945 2685241 . - . ID=gene-NDY25_11720;Name=NDY25_11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11720 CP098604.1 Protein Homology CDS 2684945 2685241 . - 0 ID=cds-UUF00697.1;Parent=gene-NDY25_11720;Dbxref=NCBI_GP:UUF00697.1;Name=UUF00697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452143.1;locus_tag=NDY25_11720;product=helix-turn-helix domain-containing protein;protein_id=UUF00697.1;transl_table=11 CP098604.1 Genbank gene 2685548 2687284 . + . ID=gene-NDY25_11725;Name=NDY25_11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11725 CP098604.1 Protein Homology CDS 2685548 2687284 . + 0 ID=cds-UUF00698.1;Parent=gene-NDY25_11725;Dbxref=NCBI_GP:UUF00698.1;Name=UUF00698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921180.1;locus_tag=NDY25_11725;product=peptidase M61;protein_id=UUF00698.1;transl_table=11 CP098604.1 Genbank gene 2687336 2687980 . - . ID=gene-NDY25_11730;Name=NDY25_11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11730 CP098604.1 Protein Homology CDS 2687336 2687980 . - 0 ID=cds-UUF00699.1;Parent=gene-NDY25_11730;Dbxref=NCBI_GP:UUF00699.1;Name=UUF00699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490472.1;locus_tag=NDY25_11730;product=DUF4375 domain-containing protein;protein_id=UUF00699.1;transl_table=11 CP098604.1 Genbank gene 2688072 2688962 . - . ID=gene-NDY25_11735;Name=phhA;gbkey=Gene;gene=phhA;gene_biotype=protein_coding;locus_tag=NDY25_11735 CP098604.1 Protein Homology CDS 2688072 2688962 . - 0 ID=cds-UUF00700.1;Parent=gene-NDY25_11735;Dbxref=NCBI_GP:UUF00700.1;Name=UUF00700.1;Ontology_term=GO:0006559,GO:0004505;gbkey=CDS;gene=phhA;go_function=phenylalanine 4-monooxygenase activity|0004505||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158567.1;locus_tag=NDY25_11735;product=phenylalanine 4-monooxygenase;protein_id=UUF00700.1;transl_table=11 CP098604.1 Genbank gene 2689090 2689572 . + . ID=gene-NDY25_11740;Name=NDY25_11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11740 CP098604.1 Protein Homology CDS 2689090 2689572 . + 0 ID=cds-UUF00701.1;Parent=gene-NDY25_11740;Dbxref=NCBI_GP:UUF00701.1;Name=UUF00701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912138.1;locus_tag=NDY25_11740;product=Lrp/AsnC family transcriptional regulator;protein_id=UUF00701.1;transl_table=11 CP098604.1 Genbank gene 2689794 2692007 . + . ID=gene-NDY25_11745;Name=NDY25_11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11745 CP098604.1 Protein Homology CDS 2689794 2692007 . + 0 ID=cds-UUF00702.1;Parent=gene-NDY25_11745;Dbxref=NCBI_GP:UUF00702.1;Name=UUF00702.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157370.1;locus_tag=NDY25_11745;product=TonB-dependent siderophore receptor;protein_id=UUF00702.1;transl_table=11 CP098604.1 Genbank gene 2692459 2693496 . - . ID=gene-NDY25_11750;Name=NDY25_11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11750 CP098604.1 Protein Homology CDS 2692459 2693496 . - 0 ID=cds-UUF00703.1;Parent=gene-NDY25_11750;Dbxref=NCBI_GP:UUF00703.1;Name=UUF00703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035416.1;locus_tag=NDY25_11750;product=patatin-like phospholipase family protein;protein_id=UUF00703.1;transl_table=11 CP098604.1 Genbank gene 2693710 2694543 . - . ID=gene-NDY25_11755;Name=NDY25_11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11755 CP098604.1 Protein Homology CDS 2693710 2694543 . - 0 ID=cds-UUF00704.1;Parent=gene-NDY25_11755;Dbxref=NCBI_GP:UUF00704.1;Name=UUF00704.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453187.1;locus_tag=NDY25_11755;product=ATP-binding cassette domain-containing protein;protein_id=UUF00704.1;transl_table=11 CP098604.1 Genbank gene 2694695 2695900 . + . ID=gene-NDY25_11760;Name=NDY25_11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11760 CP098604.1 Protein Homology CDS 2694695 2695900 . + 0 ID=cds-UUF00705.1;Parent=gene-NDY25_11760;Dbxref=NCBI_GP:UUF00705.1;Name=UUF00705.1;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379811.1;locus_tag=NDY25_11760;product=fatty acid desaturase;protein_id=UUF00705.1;transl_table=11 CP098604.1 Genbank gene 2695962 2696285 . + . ID=gene-NDY25_11765;Name=NDY25_11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11765 CP098604.1 Protein Homology CDS 2695962 2696285 . + 0 ID=cds-UUF04631.1;Parent=gene-NDY25_11765;Dbxref=NCBI_GP:UUF04631.1;Name=UUF04631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453189.1;locus_tag=NDY25_11765;product=calcium-dependent protein kinase 21;protein_id=UUF04631.1;transl_table=11 CP098604.1 Genbank gene 2696346 2697083 . + . ID=gene-NDY25_11770;Name=NDY25_11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11770 CP098604.1 Protein Homology CDS 2696346 2697083 . + 0 ID=cds-UUF00706.1;Parent=gene-NDY25_11770;Dbxref=NCBI_GP:UUF00706.1;Name=UUF00706.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992662.1;locus_tag=NDY25_11770;product=ATP-binding cassette domain-containing protein;protein_id=UUF00706.1;transl_table=11 CP098604.1 Genbank gene 2697080 2698552 . + . ID=gene-NDY25_11775;Name=NDY25_11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11775 CP098604.1 Protein Homology CDS 2697080 2698552 . + 0 ID=cds-UUF00707.1;Parent=gene-NDY25_11775;Dbxref=NCBI_GP:UUF00707.1;Name=UUF00707.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992664.1;locus_tag=NDY25_11775;product=ABC transporter permease subunit;protein_id=UUF00707.1;transl_table=11 CP098604.1 Genbank gene 2698674 2699855 . - . ID=gene-NDY25_11780;Name=NDY25_11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11780 CP098604.1 Protein Homology CDS 2698674 2699855 . - 0 ID=cds-UUF00708.1;Parent=gene-NDY25_11780;Dbxref=NCBI_GP:UUF00708.1;Name=UUF00708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088984.1;locus_tag=NDY25_11780;product=aminotransferase class V-fold PLP-dependent enzyme;protein_id=UUF00708.1;transl_table=11 CP098604.1 Genbank gene 2699921 2701210 . + . ID=gene-NDY25_11785;Name=egtB;gbkey=Gene;gene=egtB;gene_biotype=protein_coding;locus_tag=NDY25_11785 CP098604.1 Protein Homology CDS 2699921 2701210 . + 0 ID=cds-UUF00709.1;Parent=gene-NDY25_11785;Dbxref=NCBI_GP:UUF00709.1;Name=UUF00709.1;Ontology_term=GO:0052699;gbkey=CDS;gene=egtB;go_process=ergothioneine biosynthetic process|0052699||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471562.1;locus_tag=NDY25_11785;product=ergothioneine biosynthesis protein EgtB;protein_id=UUF00709.1;transl_table=11 CP098604.1 Genbank gene 2701207 2702193 . + . ID=gene-NDY25_11790;Name=egtD;gbkey=Gene;gene=egtD;gene_biotype=protein_coding;locus_tag=NDY25_11790 CP098604.1 Protein Homology CDS 2701207 2702193 . + 0 ID=cds-UUF00710.1;Parent=gene-NDY25_11790;Dbxref=NCBI_GP:UUF00710.1;Name=UUF00710.1;Ontology_term=GO:0052699,GO:0030745;gbkey=CDS;gene=egtD;go_function=dimethylhistidine N-methyltransferase activity|0030745||IEA;go_process=ergothioneine biosynthetic process|0052699||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157360.1;locus_tag=NDY25_11790;product=L-histidine N(alpha)-methyltransferase;protein_id=UUF00710.1;transl_table=11 CP098604.1 Genbank gene 2702251 2703528 . - . ID=gene-NDY25_11795;Name=NDY25_11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11795 CP098604.1 Protein Homology CDS 2702251 2703528 . - 0 ID=cds-UUF00711.1;Parent=gene-NDY25_11795;Dbxref=NCBI_GP:UUF00711.1;Name=UUF00711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501485.1;locus_tag=NDY25_11795;product=type II toxin-antitoxin system HipA family toxin;protein_id=UUF00711.1;transl_table=11 CP098604.1 Genbank gene 2703525 2704142 . - . ID=gene-NDY25_11800;Name=NDY25_11800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11800 CP098604.1 Protein Homology CDS 2703525 2704142 . - 0 ID=cds-UUF00712.1;Parent=gene-NDY25_11800;Dbxref=NCBI_GP:UUF00712.1;Name=UUF00712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921168.1;locus_tag=NDY25_11800;product=helix-turn-helix transcriptional regulator;protein_id=UUF00712.1;transl_table=11 CP098604.1 Genbank gene 2704268 2708014 . - . ID=gene-NDY25_11805;Name=NDY25_11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11805 CP098604.1 Protein Homology CDS 2704268 2708014 . - 0 ID=cds-UUF00713.1;Parent=gene-NDY25_11805;Dbxref=NCBI_GP:UUF00713.1;Name=UUF00713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012478718.1;locus_tag=NDY25_11805;product=indolepyruvate ferredoxin oxidoreductase family protein;protein_id=UUF00713.1;transl_table=11 CP098604.1 Genbank gene 2708139 2708777 . + . ID=gene-NDY25_11810;Name=NDY25_11810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11810 CP098604.1 Protein Homology CDS 2708139 2708777 . + 0 ID=cds-UUF00714.1;Parent=gene-NDY25_11810;Dbxref=NCBI_GP:UUF00714.1;Name=UUF00714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571529.1;locus_tag=NDY25_11810;product=tetratricopeptide repeat protein;protein_id=UUF00714.1;transl_table=11 CP098604.1 Genbank gene 2709436 2710353 . + . ID=gene-NDY25_11815;Name=NDY25_11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11815 CP098604.1 Protein Homology CDS 2709436 2710353 . + 0 ID=cds-UUF00715.1;Parent=gene-NDY25_11815;Dbxref=NCBI_GP:UUF00715.1;Name=UUF00715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088991.1;locus_tag=NDY25_11815;product=AEC family transporter;protein_id=UUF00715.1;transl_table=11 CP098604.1 Genbank gene 2710685 2711317 . + . ID=gene-NDY25_11820;Name=NDY25_11820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11820 CP098604.1 Protein Homology CDS 2710685 2711317 . + 0 ID=cds-UUF00716.1;Parent=gene-NDY25_11820;Dbxref=NCBI_GP:UUF00716.1;Name=UUF00716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159611.1;locus_tag=NDY25_11820;product=ParA family protein;protein_id=UUF00716.1;transl_table=11 CP098604.1 Genbank gene 2711332 2711808 . + . ID=gene-NDY25_11825;Name=NDY25_11825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11825 CP098604.1 Protein Homology CDS 2711332 2711808 . + 0 ID=cds-UUF00717.1;Parent=gene-NDY25_11825;Dbxref=NCBI_GP:UUF00717.1;Name=UUF00717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035432.1;locus_tag=NDY25_11825;product=histidine phosphatase family protein;protein_id=UUF00717.1;transl_table=11 CP098604.1 Genbank gene 2711812 2712384 . + . ID=gene-NDY25_11830;Name=NDY25_11830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11830 CP098604.1 Protein Homology CDS 2711812 2712384 . + 0 ID=cds-UUF00718.1;Parent=gene-NDY25_11830;Dbxref=NCBI_GP:UUF00718.1;Name=UUF00718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488454.1;locus_tag=NDY25_11830;product=YceI family protein;protein_id=UUF00718.1;transl_table=11 CP098604.1 Genbank gene 2712381 2714414 . + . ID=gene-NDY25_11835;Name=NDY25_11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11835 CP098604.1 Protein Homology CDS 2712381 2714414 . + 0 ID=cds-UUF00719.1;Parent=gene-NDY25_11835;Dbxref=NCBI_GP:UUF00719.1;Name=UUF00719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921165.1;locus_tag=NDY25_11835;product=phospholipase D family protein;protein_id=UUF00719.1;transl_table=11 CP098604.1 Genbank gene 2714651 2715079 . + . ID=gene-NDY25_11840;Name=NDY25_11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11840 CP098604.1 Protein Homology CDS 2714651 2715079 . + 0 ID=cds-UUF00720.1;Parent=gene-NDY25_11840;Dbxref=NCBI_GP:UUF00720.1;Name=UUF00720.1;Ontology_term=GO:0016790;gbkey=CDS;go_function=thiolester hydrolase activity|0016790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157352.1;locus_tag=NDY25_11840;product=hotdog fold thioesterase;protein_id=UUF00720.1;transl_table=11 CP098604.1 Genbank gene 2715101 2716000 . + . ID=gene-NDY25_11845;Name=NDY25_11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11845 CP098604.1 Protein Homology CDS 2715101 2716000 . + 0 ID=cds-UUF00721.1;Parent=gene-NDY25_11845;Dbxref=NCBI_GP:UUF00721.1;Name=UUF00721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851587.1;locus_tag=NDY25_11845;product=1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=UUF00721.1;transl_table=11 CP098604.1 Genbank gene 2716063 2717049 . + . ID=gene-NDY25_11850;Name=NDY25_11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11850 CP098604.1 Protein Homology CDS 2716063 2717049 . + 0 ID=cds-UUF00722.1;Parent=gene-NDY25_11850;Dbxref=NCBI_GP:UUF00722.1;Name=UUF00722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449215.1;locus_tag=NDY25_11850;product=alpha/beta fold hydrolase;protein_id=UUF00722.1;transl_table=11 CP098604.1 Genbank gene 2717113 2718093 . + . ID=gene-NDY25_11855;Name=NDY25_11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11855 CP098604.1 Protein Homology CDS 2717113 2718093 . + 0 ID=cds-UUF00723.1;Parent=gene-NDY25_11855;Dbxref=NCBI_GP:UUF00723.1;Name=UUF00723.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_11855;product=IS5 family transposase;protein_id=UUF00723.1;transl_table=11 CP098604.1 Genbank gene 2718827 2720902 . + . ID=gene-NDY25_11860;Name=NDY25_11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11860 CP098604.1 Protein Homology CDS 2718827 2720902 . + 0 ID=cds-UUF00724.1;Parent=gene-NDY25_11860;Dbxref=NCBI_GP:UUF00724.1;Name=UUF00724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237114.1;locus_tag=NDY25_11860;product=tetratricopeptide repeat protein;protein_id=UUF00724.1;transl_table=11 CP098604.1 Genbank gene 2721170 2721781 . + . ID=gene-NDY25_11865;Name=NDY25_11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11865 CP098604.1 Protein Homology CDS 2721170 2721781 . + 0 ID=cds-UUF00725.1;Parent=gene-NDY25_11865;Dbxref=NCBI_GP:UUF00725.1;Name=UUF00725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157349.1;locus_tag=NDY25_11865;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=UUF00725.1;transl_table=11 CP098604.1 Genbank pseudogene 2722049 2722857 . - . ID=gene-NDY25_11870;Name=NDY25_11870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_11870;pseudo=true CP098604.1 Protein Homology CDS 2722049 2722857 . - 0 ID=cds-NDY25_11870;Parent=gene-NDY25_11870;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449212.1;locus_tag=NDY25_11870;product=META and DUF4377 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2722995 2723789 . - . ID=gene-NDY25_11875;Name=NDY25_11875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11875 CP098604.1 Protein Homology CDS 2722995 2723789 . - 0 ID=cds-UUF00726.1;Parent=gene-NDY25_11875;Dbxref=NCBI_GP:UUF00726.1;Name=UUF00726.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903412.1;locus_tag=NDY25_11875;product=undecaprenyl-diphosphate phosphatase;protein_id=UUF00726.1;transl_table=11 CP098604.1 Genbank gene 2724011 2725420 . + . ID=gene-NDY25_11880;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=NDY25_11880 CP098604.1 Protein Homology CDS 2724011 2725420 . + 0 ID=cds-UUF00727.1;Parent=gene-NDY25_11880;Dbxref=NCBI_GP:UUF00727.1;Name=UUF00727.1;Ontology_term=GO:0006542,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamate-ammonia ligase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157345.1;locus_tag=NDY25_11880;product=type I glutamate--ammonia ligase;protein_id=UUF00727.1;transl_table=11 CP098604.1 Genbank gene 2725709 2726047 . + . ID=gene-NDY25_11885;Name=NDY25_11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11885 CP098604.1 Protein Homology CDS 2725709 2726047 . + 0 ID=cds-UUF00728.1;Parent=gene-NDY25_11885;Dbxref=NCBI_GP:UUF00728.1;Name=UUF00728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_253975.1;locus_tag=NDY25_11885;product=P-II family nitrogen regulator;protein_id=UUF00728.1;transl_table=11 CP098604.1 Genbank gene 2726070 2727512 . + . ID=gene-NDY25_11890;Name=NDY25_11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11890 CP098604.1 Protein Homology CDS 2726070 2727512 . + 0 ID=cds-UUF00729.1;Parent=gene-NDY25_11890;Dbxref=NCBI_GP:UUF00729.1;Name=UUF00729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237112.1;locus_tag=NDY25_11890;product=ammonium transporter;protein_id=UUF00729.1;transl_table=11 CP098604.1 Genbank gene 2727777 2728832 . + . ID=gene-NDY25_11895;Name=NDY25_11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11895 CP098604.1 Protein Homology CDS 2727777 2728832 . + 0 ID=cds-UUF00730.1;Parent=gene-NDY25_11895;Dbxref=NCBI_GP:UUF00730.1;Name=UUF00730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850649.1;locus_tag=NDY25_11895;product=ATP-binding protein;protein_id=UUF00730.1;transl_table=11 CP098604.1 Genbank gene 2728825 2730255 . + . ID=gene-NDY25_11900;Name=ntrC;gbkey=Gene;gene=ntrC;gene_biotype=protein_coding;locus_tag=NDY25_11900 CP098604.1 Protein Homology CDS 2728825 2730255 . + 0 ID=cds-UUF00731.1;Parent=gene-NDY25_11900;Dbxref=NCBI_GP:UUF00731.1;Name=UUF00731.1;Ontology_term=GO:0000160,GO:0006808,GO:0000156,GO:0003677;gbkey=CDS;gene=ntrC;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of nitrogen utilization|0006808||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921161.1;locus_tag=NDY25_11900;product=nitrogen regulation protein NR(I);protein_id=UUF00731.1;transl_table=11 CP098604.1 Genbank gene 2730720 2731322 . + . ID=gene-NDY25_11905;Name=NDY25_11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11905 CP098604.1 Protein Homology CDS 2730720 2731322 . + 0 ID=cds-UUF00732.1;Parent=gene-NDY25_11905;Dbxref=NCBI_GP:UUF00732.1;Name=UUF00732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165149.1;locus_tag=NDY25_11905;product=superoxide dismutase family protein;protein_id=UUF00732.1;transl_table=11 CP098604.1 Genbank gene 2731372 2732019 . + . ID=gene-NDY25_11910;Name=NDY25_11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11910 CP098604.1 Protein Homology CDS 2731372 2732019 . + 0 ID=cds-UUF00733.1;Parent=gene-NDY25_11910;Dbxref=NCBI_GP:UUF00733.1;Name=UUF00733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014088999.1;locus_tag=NDY25_11910;product=superoxide dismutase family protein;protein_id=UUF00733.1;transl_table=11 CP098604.1 Genbank gene 2732238 2733122 . - . ID=gene-NDY25_11915;Name=NDY25_11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11915 CP098604.1 Protein Homology CDS 2732238 2733122 . - 0 ID=cds-UUF00734.1;Parent=gene-NDY25_11915;Dbxref=NCBI_GP:UUF00734.1;Name=UUF00734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992724.1;locus_tag=NDY25_11915;product=hypothetical protein;protein_id=UUF00734.1;transl_table=11 CP098604.1 Genbank gene 2733211 2734506 . + . ID=gene-NDY25_11920;Name=NDY25_11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11920 CP098604.1 Protein Homology CDS 2733211 2734506 . + 0 ID=cds-UUF00735.1;Parent=gene-NDY25_11920;Dbxref=NCBI_GP:UUF00735.1;Name=UUF00735.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260437.1;locus_tag=NDY25_11920;product=acetyl-CoA C-acetyltransferase;protein_id=UUF00735.1;transl_table=11 CP098604.1 Genbank gene 2734620 2735162 . + . ID=gene-NDY25_11925;Name=NDY25_11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11925 CP098604.1 Protein Homology CDS 2734620 2735162 . + 0 ID=cds-UUF00736.1;Parent=gene-NDY25_11925;Dbxref=NCBI_GP:UUF00736.1;Name=UUF00736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449202.1;locus_tag=NDY25_11925;product=hypothetical protein;protein_id=UUF00736.1;transl_table=11 CP098604.1 Genbank gene 2735367 2736632 . - . ID=gene-NDY25_11930;Name=NDY25_11930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11930 CP098604.1 Protein Homology CDS 2735367 2736632 . - 0 ID=cds-UUF00737.1;Parent=gene-NDY25_11930;Dbxref=NCBI_GP:UUF00737.1;Name=UUF00737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112149.1;locus_tag=NDY25_11930;product=heme biosynthesis protein HemY;protein_id=UUF00737.1;transl_table=11 CP098604.1 Genbank gene 2736629 2737606 . - . ID=gene-NDY25_11935;Name=NDY25_11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11935 CP098604.1 Protein Homology CDS 2736629 2737606 . - 0 ID=cds-UUF00738.1;Parent=gene-NDY25_11935;Dbxref=NCBI_GP:UUF00738.1;Name=UUF00738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488502.1;locus_tag=NDY25_11935;product=uroporphyrinogen-III C-methyltransferase;protein_id=UUF00738.1;transl_table=11 CP098604.1 Genbank gene 2737710 2738486 . - . ID=gene-NDY25_11940;Name=NDY25_11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11940 CP098604.1 Protein Homology CDS 2737710 2738486 . - 0 ID=cds-UUF00739.1;Parent=gene-NDY25_11940;Dbxref=NCBI_GP:UUF00739.1;Name=UUF00739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449199.1;locus_tag=NDY25_11940;product=uroporphyrinogen-III synthase;protein_id=UUF00739.1;transl_table=11 CP098604.1 Genbank gene 2738707 2739516 . + . ID=gene-NDY25_11945;Name=NDY25_11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11945 CP098604.1 Protein Homology CDS 2738707 2739516 . + 0 ID=cds-UUF00740.1;Parent=gene-NDY25_11945;Dbxref=NCBI_GP:UUF00740.1;Name=UUF00740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089004.1;locus_tag=NDY25_11945;product=glycosyltransferase family 25 protein;protein_id=UUF00740.1;transl_table=11 CP098604.1 Genbank gene 2739656 2740126 . + . ID=gene-NDY25_11950;Name=NDY25_11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11950 CP098604.1 Protein Homology CDS 2739656 2740126 . + 0 ID=cds-UUF00741.1;Parent=gene-NDY25_11950;Dbxref=NCBI_GP:UUF00741.1;Name=UUF00741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156408.1;locus_tag=NDY25_11950;product=YiiD C-terminal domain-containing protein;protein_id=UUF00741.1;transl_table=11 CP098604.1 Genbank gene 2740154 2740576 . + . ID=gene-NDY25_11955;Name=NDY25_11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11955 CP098604.1 Protein Homology CDS 2740154 2740576 . + 0 ID=cds-UUF00742.1;Parent=gene-NDY25_11955;Dbxref=NCBI_GP:UUF00742.1;Name=UUF00742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912206.1;locus_tag=NDY25_11955;product=hypothetical protein;protein_id=UUF00742.1;transl_table=11 CP098604.1 Genbank gene 2740653 2741090 . + . ID=gene-NDY25_11960;Name=NDY25_11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11960 CP098604.1 Protein Homology CDS 2740653 2741090 . + 0 ID=cds-UUF04632.1;Parent=gene-NDY25_11960;Dbxref=NCBI_GP:UUF04632.1;Name=UUF04632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809858.1;locus_tag=NDY25_11960;product=rhodanese-like domain-containing protein;protein_id=UUF04632.1;transl_table=11 CP098604.1 Genbank gene 2741202 2741717 . + . ID=gene-NDY25_11965;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=NDY25_11965 CP098604.1 Protein Homology CDS 2741202 2741717 . + 0 ID=cds-UUF00743.1;Parent=gene-NDY25_11965;Dbxref=NCBI_GP:UUF00743.1;Name=UUF00743.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501523.1;locus_tag=NDY25_11965;product=protein-export chaperone SecB;protein_id=UUF00743.1;transl_table=11 CP098604.1 Genbank gene 2741733 2742758 . + . ID=gene-NDY25_11970;Name=NDY25_11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11970 CP098604.1 Protein Homology CDS 2741733 2742758 . + 0 ID=cds-UUF00744.1;Parent=gene-NDY25_11970;Dbxref=NCBI_GP:UUF00744.1;Name=UUF00744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035460.1;locus_tag=NDY25_11970;product=NAD(P)-dependent glycerol-3-phosphate dehydrogenase;protein_id=UUF00744.1;transl_table=11 CP098604.1 Genbank gene 2743060 2743656 . - . ID=gene-NDY25_11975;Name=NDY25_11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11975 CP098604.1 Protein Homology CDS 2743060 2743656 . - 0 ID=cds-UUF00745.1;Parent=gene-NDY25_11975;Dbxref=NCBI_GP:UUF00745.1;Name=UUF00745.1;Ontology_term=GO:0009372;gbkey=CDS;go_process=quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451122.1;locus_tag=NDY25_11975;product=Ax21 family protein;protein_id=UUF00745.1;transl_table=11 CP098604.1 Genbank gene 2744021 2745730 . + . ID=gene-NDY25_11980;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=NDY25_11980 CP098604.1 Protein Homology CDS 2744021 2745730 . + 0 ID=cds-UUF04633.1;Parent=gene-NDY25_11980;Dbxref=NCBI_GP:UUF04633.1;Name=UUF04633.1;Ontology_term=GO:0006090,GO:0000287,GO:0030976,GO:0052737;gbkey=CDS;gene=poxB;go_function=magnesium ion binding|0000287||IEA,thiamine pyrophosphate binding|0030976||IEA,pyruvate dehydrogenase (quinone) activity|0052737||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089006.1;locus_tag=NDY25_11980;product=ubiquinone-dependent pyruvate dehydrogenase;protein_id=UUF04633.1;transl_table=11 CP098604.1 Genbank gene 2745778 2747220 . + . ID=gene-NDY25_11985;Name=NDY25_11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11985 CP098604.1 Protein Homology CDS 2745778 2747220 . + 0 ID=cds-UUF00746.1;Parent=gene-NDY25_11985;Dbxref=NCBI_GP:UUF00746.1;Name=UUF00746.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156414.1;locus_tag=NDY25_11985;product=ATP-binding protein;protein_id=UUF00746.1;transl_table=11 CP098604.1 Genbank gene 2747205 2748542 . + . ID=gene-NDY25_11990;Name=NDY25_11990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11990 CP098604.1 Protein Homology CDS 2747205 2748542 . + 0 ID=cds-UUF00747.1;Parent=gene-NDY25_11990;Dbxref=NCBI_GP:UUF00747.1;Name=UUF00747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966360.1;locus_tag=NDY25_11990;product=sigma-54 dependent transcriptional regulator;protein_id=UUF00747.1;transl_table=11 CP098604.1 Genbank gene 2748907 2749707 . + . ID=gene-NDY25_11995;Name=NDY25_11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_11995 CP098604.1 Protein Homology CDS 2748907 2749707 . + 0 ID=cds-UUF00748.1;Parent=gene-NDY25_11995;Dbxref=NCBI_GP:UUF00748.1;Name=UUF00748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509445.1;locus_tag=NDY25_11995;product=hypothetical protein;protein_id=UUF00748.1;transl_table=11 CP098604.1 Genbank gene 2749840 2750454 . + . ID=gene-NDY25_12000;Name=NDY25_12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12000 CP098604.1 Protein Homology CDS 2749840 2750454 . + 0 ID=cds-UUF00749.1;Parent=gene-NDY25_12000;Dbxref=NCBI_GP:UUF00749.1;Name=UUF00749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966364.1;locus_tag=NDY25_12000;product=hypothetical protein;protein_id=UUF00749.1;transl_table=11 CP098604.1 Genbank pseudogene 2750559 2751787 . + . ID=gene-NDY25_12005;Name=NDY25_12005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12005;pseudo=true CP098604.1 Protein Homology CDS 2750559 2751787 . + 0 ID=cds-NDY25_12005;Parent=gene-NDY25_12005;Note=frameshifted;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451116.1;locus_tag=NDY25_12005;product=MFS transporter;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2751943 2752419 . - . ID=gene-NDY25_12010;Name=NDY25_12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12010 CP098604.1 Protein Homology CDS 2751943 2752419 . - 0 ID=cds-UUF00750.1;Parent=gene-NDY25_12010;Dbxref=NCBI_GP:UUF00750.1;Name=UUF00750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301073.1;locus_tag=NDY25_12010;product=tRNA (cytidine(34)-2'-O)-methyltransferase;protein_id=UUF00750.1;transl_table=11 CP098604.1 Genbank gene 2752446 2752907 . - . ID=gene-NDY25_12015;Name=NDY25_12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12015 CP098604.1 Protein Homology CDS 2752446 2752907 . - 0 ID=cds-UUF00751.1;Parent=gene-NDY25_12015;Dbxref=NCBI_GP:UUF00751.1;Name=UUF00751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912218.1;locus_tag=NDY25_12015;product=hypothetical protein;protein_id=UUF00751.1;transl_table=11 CP098604.1 Genbank gene 2753305 2753625 . + . ID=gene-NDY25_12020;Name=NDY25_12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12020 CP098604.1 Protein Homology CDS 2753305 2753625 . + 0 ID=cds-UUF00752.1;Parent=gene-NDY25_12020;Dbxref=NCBI_GP:UUF00752.1;Name=UUF00752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488921.1;locus_tag=NDY25_12020;product=DUF4156 domain-containing protein;protein_id=UUF00752.1;transl_table=11 CP098604.1 Genbank gene 2753727 2754743 . + . ID=gene-NDY25_12025;Name=NDY25_12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12025 CP098604.1 Protein Homology CDS 2753727 2754743 . + 0 ID=cds-UUF00753.1;Parent=gene-NDY25_12025;Dbxref=NCBI_GP:UUF00753.1;Name=UUF00753.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002809874.1;locus_tag=NDY25_12025;product=3-oxoacyl-ACP synthase III;protein_id=UUF00753.1;transl_table=11 CP098604.1 Genbank gene 2754917 2756035 . + . ID=gene-NDY25_12030;Name=NDY25_12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12030 CP098604.1 Protein Homology CDS 2754917 2756035 . + 0 ID=cds-UUF00754.1;Parent=gene-NDY25_12030;Dbxref=NCBI_GP:UUF00754.1;Name=UUF00754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501535.1;locus_tag=NDY25_12030;product=Fic family protein;protein_id=UUF00754.1;transl_table=11 CP098604.1 Genbank gene 2756175 2757077 . + . ID=gene-NDY25_12035;Name=NDY25_12035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12035 CP098604.1 Protein Homology CDS 2756175 2757077 . + 0 ID=cds-UUF00755.1;Parent=gene-NDY25_12035;Dbxref=NCBI_GP:UUF00755.1;Name=UUF00755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849672.1;locus_tag=NDY25_12035;product=alpha/beta fold hydrolase;protein_id=UUF00755.1;transl_table=11 CP098604.1 Genbank gene 2757222 2757605 . - . ID=gene-NDY25_12040;Name=NDY25_12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12040 CP098604.1 Protein Homology CDS 2757222 2757605 . - 0 ID=cds-UUF00756.1;Parent=gene-NDY25_12040;Dbxref=NCBI_GP:UUF00756.1;Name=UUF00756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849671.1;locus_tag=NDY25_12040;product=YkgJ family cysteine cluster protein;protein_id=UUF00756.1;transl_table=11 CP098604.1 Genbank gene 2757923 2759578 . + . ID=gene-NDY25_12045;Name=oleC;gbkey=Gene;gene=oleC;gene_biotype=protein_coding;locus_tag=NDY25_12045 CP098604.1 Protein Homology CDS 2757923 2759578 . + 0 ID=cds-UUF00757.1;Parent=gene-NDY25_12045;Dbxref=NCBI_GP:UUF00757.1;Name=UUF00757.1;gbkey=CDS;gene=oleC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451108.1;locus_tag=NDY25_12045;product=olefin beta-lactone synthetase OleC;protein_id=UUF00757.1;transl_table=11 CP098604.1 Genbank gene 2759587 2761140 . + . ID=gene-NDY25_12050;Name=NDY25_12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12050 CP098604.1 Protein Homology CDS 2759587 2761140 . + 0 ID=cds-UUF00758.1;Parent=gene-NDY25_12050;Dbxref=NCBI_GP:UUF00758.1;Name=UUF00758.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451107.1;locus_tag=NDY25_12050;product=winged helix-turn-helix domain-containing protein;protein_id=UUF00758.1;transl_table=11 CP098604.1 Genbank gene 2761801 2763042 . - . ID=gene-NDY25_12055;Name=NDY25_12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12055 CP098604.1 Protein Homology CDS 2761801 2763042 . - 0 ID=cds-UUF00759.1;Parent=gene-NDY25_12055;Dbxref=NCBI_GP:UUF00759.1;Name=UUF00759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003480206.1;locus_tag=NDY25_12055;product=beta-lactamase family protein;protein_id=UUF00759.1;transl_table=11 CP098604.1 Genbank gene 2763241 2764251 . + . ID=gene-NDY25_12060;Name=NDY25_12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12060 CP098604.1 Protein Homology CDS 2763241 2764251 . + 0 ID=cds-UUF00760.1;Parent=gene-NDY25_12060;Dbxref=NCBI_GP:UUF00760.1;Name=UUF00760.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912231.1;locus_tag=NDY25_12060;product=NAD-dependent epimerase/dehydratase family protein;protein_id=UUF00760.1;transl_table=11 CP098604.1 Genbank gene 2764316 2764474 . + . ID=gene-NDY25_12065;Name=NDY25_12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12065 CP098604.1 Protein Homology CDS 2764316 2764474 . + 0 ID=cds-UUF00761.1;Parent=gene-NDY25_12065;Dbxref=NCBI_GP:UUF00761.1;Name=UUF00761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260548.1;locus_tag=NDY25_12065;product=DUF1328 domain-containing protein;protein_id=UUF00761.1;transl_table=11 CP098604.1 Genbank gene 2764593 2765075 . - . ID=gene-NDY25_12070;Name=NDY25_12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12070 CP098604.1 Protein Homology CDS 2764593 2765075 . - 0 ID=cds-UUF00762.1;Parent=gene-NDY25_12070;Dbxref=NCBI_GP:UUF00762.1;Name=UUF00762.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944694.1;locus_tag=NDY25_12070;product=GNAT family N-acetyltransferase;protein_id=UUF00762.1;transl_table=11 CP098604.1 Genbank gene 2765075 2766178 . - . ID=gene-NDY25_12075;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;locus_tag=NDY25_12075 CP098604.1 Protein Homology CDS 2765075 2766178 . - 0 ID=cds-UUF00763.1;Parent=gene-NDY25_12075;Dbxref=NCBI_GP:UUF00763.1;Name=UUF00763.1;Ontology_term=GO:0008716;gbkey=CDS;gene=ddlA;go_function=D-alanine-D-alanine ligase activity|0008716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449822.1;locus_tag=NDY25_12075;product=D-alanine--D-alanine ligase;protein_id=UUF00763.1;transl_table=11 CP098604.1 Genbank gene 2766373 2767017 . + . ID=gene-NDY25_12080;Name=NDY25_12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12080 CP098604.1 Protein Homology CDS 2766373 2767017 . + 0 ID=cds-UUF00764.1;Parent=gene-NDY25_12080;Dbxref=NCBI_GP:UUF00764.1;Name=UUF00764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156427.1;locus_tag=NDY25_12080;product=SCP2 sterol-binding domain-containing protein;protein_id=UUF00764.1;transl_table=11 CP098604.1 Genbank gene 2767014 2768687 . + . ID=gene-NDY25_12085;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=NDY25_12085 CP098604.1 Protein Homology CDS 2767014 2768687 . + 0 ID=cds-UUF00765.1;Parent=gene-NDY25_12085;Dbxref=NCBI_GP:UUF00765.1;Name=UUF00765.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304665.1;locus_tag=NDY25_12085;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=UUF00765.1;transl_table=11 CP098604.1 Genbank gene 2768736 2769557 . + . ID=gene-NDY25_12090;Name=NDY25_12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12090 CP098604.1 Protein Homology CDS 2768736 2769557 . + 0 ID=cds-UUF04634.1;Parent=gene-NDY25_12090;Dbxref=NCBI_GP:UUF04634.1;Name=UUF04634.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156430.1;locus_tag=NDY25_12090;product=pseudouridine synthase;protein_id=UUF04634.1;transl_table=11 CP098604.1 Genbank gene 2769956 2770534 . - . ID=gene-NDY25_12095;Name=NDY25_12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12095 CP098604.1 Protein Homology CDS 2769956 2770534 . - 0 ID=cds-UUF04635.1;Parent=gene-NDY25_12095;Dbxref=NCBI_GP:UUF04635.1;Name=UUF04635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966404.1;locus_tag=NDY25_12095;product=DUF2059 domain-containing protein;protein_id=UUF04635.1;transl_table=11 CP098604.1 Genbank gene 2770590 2771021 . + . ID=gene-NDY25_12100;Name=arfB;gbkey=Gene;gene=arfB;gene_biotype=protein_coding;locus_tag=NDY25_12100 CP098604.1 Protein Homology CDS 2770590 2771021 . + 0 ID=cds-UUF00766.1;Parent=gene-NDY25_12100;Dbxref=NCBI_GP:UUF00766.1;Name=UUF00766.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=arfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257289.1;locus_tag=NDY25_12100;product=aminoacyl-tRNA hydrolase;protein_id=UUF00766.1;transl_table=11 CP098604.1 Genbank gene 2771024 2771653 . + . ID=gene-NDY25_12105;Name=NDY25_12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12105 CP098604.1 Protein Homology CDS 2771024 2771653 . + 0 ID=cds-UUF00767.1;Parent=gene-NDY25_12105;Dbxref=NCBI_GP:UUF00767.1;Name=UUF00767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035483.1;locus_tag=NDY25_12105;product=lysophosphatidylcholine acyltransferase;protein_id=UUF00767.1;transl_table=11 CP098604.1 Genbank gene 2771752 2772768 . + . ID=gene-NDY25_12110;Name=NDY25_12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12110 CP098604.1 Protein Homology CDS 2771752 2772768 . + 0 ID=cds-UUF00768.1;Parent=gene-NDY25_12110;Dbxref=NCBI_GP:UUF00768.1;Name=UUF00768.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117620.1;locus_tag=NDY25_12110;product=isoaspartyl peptidase/L-asparaginase;protein_id=UUF00768.1;transl_table=11 CP098604.1 Genbank pseudogene 2772883 2774903 . + . ID=gene-NDY25_12115;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=pseudogene;locus_tag=NDY25_12115;pseudo=true CP098604.1 Protein Homology CDS 2772883 2774903 . + 0 ID=cds-NDY25_12115;Parent=gene-NDY25_12115;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115821.1;locus_tag=NDY25_12115;product=peptidyl-dipeptidase Dcp;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2775018 2777039 . - . ID=gene-NDY25_12120;Name=NDY25_12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12120 CP098604.1 Protein Homology CDS 2775018 2777039 . - 0 ID=cds-UUF00769.1;Parent=gene-NDY25_12120;Dbxref=NCBI_GP:UUF00769.1;Name=UUF00769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944689.1;locus_tag=NDY25_12120;product=type III secretion system effector protein;protein_id=UUF00769.1;transl_table=11 CP098604.1 Genbank gene 2777587 2778642 . - . ID=gene-NDY25_12125;Name=NDY25_12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12125 CP098604.1 Protein Homology CDS 2777587 2778642 . - 0 ID=cds-UUF00770.1;Parent=gene-NDY25_12125;Dbxref=NCBI_GP:UUF00770.1;Name=UUF00770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117616.1;locus_tag=NDY25_12125;product=MBL fold metallo-hydrolase;protein_id=UUF00770.1;transl_table=11 CP098604.1 Genbank gene 2778873 2779505 . + . ID=gene-NDY25_12130;Name=NDY25_12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12130 CP098604.1 Protein Homology CDS 2778873 2779505 . + 0 ID=cds-UUF00771.1;Parent=gene-NDY25_12130;Dbxref=NCBI_GP:UUF00771.1;Name=UUF00771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928578.1;locus_tag=NDY25_12130;product=TetR/AcrR family transcriptional regulator;protein_id=UUF00771.1;transl_table=11 CP098604.1 Genbank gene 2779525 2779875 . - . ID=gene-NDY25_12135;Name=NDY25_12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12135 CP098604.1 Protein Homology CDS 2779525 2779875 . - 0 ID=cds-UUF00772.1;Parent=gene-NDY25_12135;Dbxref=NCBI_GP:UUF00772.1;Name=UUF00772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966411.1;locus_tag=NDY25_12135;product=VOC family protein;protein_id=UUF00772.1;transl_table=11 CP098604.1 Genbank pseudogene 2779945 2780546 . - . ID=gene-NDY25_12140;Name=NDY25_12140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12140;pseudo=true CP098604.1 Protein Homology CDS 2779945 2780546 . - 0 ID=cds-NDY25_12140;Parent=gene-NDY25_12140;Note=frameshifted;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156440.1;locus_tag=NDY25_12140;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2780701 2781963 . - . ID=gene-NDY25_12145;Name=NDY25_12145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12145 CP098604.1 Protein Homology CDS 2780701 2781963 . - 0 ID=cds-UUF00773.1;Parent=gene-NDY25_12145;Dbxref=NCBI_GP:UUF00773.1;Name=UUF00773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117614.1;locus_tag=NDY25_12145;product=cation:proton antiporter;protein_id=UUF00773.1;transl_table=11 CP098604.1 Genbank gene 2782357 2783313 . - . ID=gene-NDY25_12150;Name=NDY25_12150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12150 CP098604.1 Protein Homology CDS 2782357 2783313 . - 0 ID=cds-UUF00774.1;Parent=gene-NDY25_12150;Dbxref=NCBI_GP:UUF00774.1;Name=UUF00774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156442.1;locus_tag=NDY25_12150;product=LysR family transcriptional regulator;protein_id=UUF00774.1;transl_table=11 CP098604.1 Genbank gene 2783431 2785047 . + . ID=gene-NDY25_12155;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;locus_tag=NDY25_12155 CP098604.1 Protein Homology CDS 2783431 2785047 . + 0 ID=cds-UUF00775.1;Parent=gene-NDY25_12155;Dbxref=NCBI_GP:UUF00775.1;Name=UUF00775.1;Ontology_term=GO:0006099,GO:0004474;gbkey=CDS;gene=aceB;go_function=malate synthase activity|0004474||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156443.1;locus_tag=NDY25_12155;product=malate synthase A;protein_id=UUF00775.1;transl_table=11 CP098604.1 Genbank gene 2785240 2786535 . + . ID=gene-NDY25_12160;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;locus_tag=NDY25_12160 CP098604.1 Protein Homology CDS 2785240 2786535 . + 0 ID=cds-UUF00776.1;Parent=gene-NDY25_12160;Dbxref=NCBI_GP:UUF00776.1;Name=UUF00776.1;Ontology_term=GO:0019752,GO:0004451;gbkey=CDS;gene=aceA;go_function=isocitrate lyase activity|0004451||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345976.1;locus_tag=NDY25_12160;product=isocitrate lyase;protein_id=UUF00776.1;transl_table=11 CP098604.1 Genbank gene 2786790 2787866 . + . ID=gene-NDY25_12165;Name=NDY25_12165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12165 CP098604.1 Protein Homology CDS 2786790 2787866 . + 0 ID=cds-UUF00777.1;Parent=gene-NDY25_12165;Dbxref=NCBI_GP:UUF00777.1;Name=UUF00777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450098.1;locus_tag=NDY25_12165;product=GGDEF domain-containing protein;protein_id=UUF00777.1;transl_table=11 CP098604.1 Genbank gene 2787870 2790521 . + . ID=gene-NDY25_12170;Name=NDY25_12170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12170 CP098604.1 Protein Homology CDS 2787870 2790521 . + 0 ID=cds-UUF00778.1;Parent=gene-NDY25_12170;Dbxref=NCBI_GP:UUF00778.1;Name=UUF00778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370482.1;locus_tag=NDY25_12170;product=putative peptide modification system cyclase;protein_id=UUF00778.1;transl_table=11 CP098604.1 Genbank gene 2790461 2790799 . - . ID=gene-NDY25_12175;Name=NDY25_12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12175 CP098604.1 Protein Homology CDS 2790461 2790799 . - 0 ID=cds-UUF00779.1;Parent=gene-NDY25_12175;Dbxref=NCBI_GP:UUF00779.1;Name=UUF00779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921144.1;locus_tag=NDY25_12175;product=NHLP-related RiPP peptide;protein_id=UUF00779.1;transl_table=11 CP098604.1 Genbank gene 2790893 2792101 . + . ID=gene-NDY25_12180;Name=NDY25_12180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12180 CP098604.1 Protein Homology CDS 2790893 2792101 . + 0 ID=cds-UUF00780.1;Parent=gene-NDY25_12180;Dbxref=NCBI_GP:UUF00780.1;Name=UUF00780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450095.1;locus_tag=NDY25_12180;product=putative peptide maturation dehydrogenase;protein_id=UUF00780.1;transl_table=11 CP098604.1 Genbank gene 2792275 2794359 . - . ID=gene-NDY25_12185;Name=NDY25_12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12185 CP098604.1 Protein Homology CDS 2792275 2794359 . - 0 ID=cds-UUF00781.1;Parent=gene-NDY25_12185;Dbxref=NCBI_GP:UUF00781.1;Name=UUF00781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572258.1;locus_tag=NDY25_12185;product=S9 family peptidase;protein_id=UUF00781.1;transl_table=11 CP098604.1 Genbank pseudogene 2794479 2796494 . - . ID=gene-NDY25_12190;Name=NDY25_12190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12190;pseudo=true CP098604.1 Protein Homology CDS 2794479 2796494 . - 0 ID=cds-NDY25_12190;Parent=gene-NDY25_12190;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089033.1;locus_tag=NDY25_12190;product=acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2796560 2798170 . - . ID=gene-NDY25_12195;Name=NDY25_12195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12195 CP098604.1 Protein Homology CDS 2796560 2798170 . - 0 ID=cds-UUF00782.1;Parent=gene-NDY25_12195;Dbxref=NCBI_GP:UUF00782.1;Name=UUF00782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437049.1;locus_tag=NDY25_12195;product=methylcrotonoyl-CoA carboxylase;protein_id=UUF00782.1;transl_table=11 CP098604.1 Genbank gene 2798181 2799344 . - . ID=gene-NDY25_12200;Name=NDY25_12200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12200 CP098604.1 Protein Homology CDS 2798181 2799344 . - 0 ID=cds-UUF00783.1;Parent=gene-NDY25_12200;Dbxref=NCBI_GP:UUF00783.1;Name=UUF00783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450091.1;locus_tag=NDY25_12200;product=isovaleryl-CoA dehydrogenase;protein_id=UUF00783.1;transl_table=11 CP098604.1 Genbank gene 2799473 2800093 . + . ID=gene-NDY25_12205;Name=NDY25_12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12205 CP098604.1 Protein Homology CDS 2799473 2800093 . + 0 ID=cds-UUF00784.1;Parent=gene-NDY25_12205;Dbxref=NCBI_GP:UUF00784.1;Name=UUF00784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921138.1;locus_tag=NDY25_12205;product=TetR/AcrR family transcriptional regulator;protein_id=UUF00784.1;transl_table=11 CP098604.1 Genbank gene 2800179 2800553 . + . ID=gene-NDY25_12210;Name=NDY25_12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12210 CP098604.1 Protein Homology CDS 2800179 2800553 . + 0 ID=cds-UUF00785.1;Parent=gene-NDY25_12210;Dbxref=NCBI_GP:UUF00785.1;Name=UUF00785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117610.1;locus_tag=NDY25_12210;product=DNA-binding protein;protein_id=UUF00785.1;transl_table=11 CP098604.1 Genbank gene 2800550 2801077 . + . ID=gene-NDY25_12215;Name=NDY25_12215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12215 CP098604.1 Protein Homology CDS 2800550 2801077 . + 0 ID=cds-UUF00786.1;Parent=gene-NDY25_12215;Dbxref=NCBI_GP:UUF00786.1;Name=UUF00786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050204.1;locus_tag=NDY25_12215;product=RES family NAD+ phosphorylase;protein_id=UUF00786.1;transl_table=11 CP098604.1 Genbank gene 2801117 2801452 . - . ID=gene-NDY25_12220;Name=NDY25_12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12220 CP098604.1 Protein Homology CDS 2801117 2801452 . - 0 ID=cds-UUF00787.1;Parent=gene-NDY25_12220;Dbxref=NCBI_GP:UUF00787.1;Name=UUF00787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156920.1;locus_tag=NDY25_12220;product=DUF3325 domain-containing protein;protein_id=UUF00787.1;transl_table=11 CP098604.1 Genbank gene 2801449 2803059 . - . ID=gene-NDY25_12225;Name=NDY25_12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12225 CP098604.1 Protein Homology CDS 2801449 2803059 . - 0 ID=cds-UUF00788.1;Parent=gene-NDY25_12225;Dbxref=NCBI_GP:UUF00788.1;Name=UUF00788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488709.1;locus_tag=NDY25_12225;product=PepSY domain-containing protein;protein_id=UUF00788.1;transl_table=11 CP098604.1 Genbank gene 2803056 2803367 . - . ID=gene-NDY25_12230;Name=NDY25_12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12230 CP098604.1 Protein Homology CDS 2803056 2803367 . - 0 ID=cds-UUF00789.1;Parent=gene-NDY25_12230;Dbxref=NCBI_GP:UUF00789.1;Name=UUF00789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462760.1;locus_tag=NDY25_12230;product=DUF3649 domain-containing protein;protein_id=UUF00789.1;transl_table=11 CP098604.1 Genbank gene 2803393 2804037 . - . ID=gene-NDY25_12235;Name=NDY25_12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12235 CP098604.1 Protein Homology CDS 2803393 2804037 . - 0 ID=cds-UUF00790.1;Parent=gene-NDY25_12235;Dbxref=NCBI_GP:UUF00790.1;Name=UUF00790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450084.1;locus_tag=NDY25_12235;product=DUF4198 domain-containing protein;protein_id=UUF00790.1;transl_table=11 CP098604.1 Genbank gene 2804409 2804927 . + . ID=gene-NDY25_12240;Name=NDY25_12240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12240 CP098604.1 Protein Homology CDS 2804409 2804927 . + 0 ID=cds-UUF00791.1;Parent=gene-NDY25_12240;Dbxref=NCBI_GP:UUF00791.1;Name=UUF00791.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921137.1;locus_tag=NDY25_12240;product=c-type cytochrome;protein_id=UUF00791.1;transl_table=11 CP098604.1 Genbank gene 2805067 2806785 . + . ID=gene-NDY25_12245;Name=NDY25_12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12245 CP098604.1 Protein Homology CDS 2805067 2806785 . + 0 ID=cds-UUF00792.1;Parent=gene-NDY25_12245;Dbxref=NCBI_GP:UUF00792.1;Name=UUF00792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089040.1;locus_tag=NDY25_12245;product=ExeM/NucH family extracellular endonuclease;protein_id=UUF00792.1;transl_table=11 CP098604.1 Genbank gene 2806909 2807295 . - . ID=gene-NDY25_12250;Name=NDY25_12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12250 CP098604.1 Protein Homology CDS 2806909 2807295 . - 0 ID=cds-UUF00793.1;Parent=gene-NDY25_12250;Dbxref=NCBI_GP:UUF00793.1;Name=UUF00793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488697.1;locus_tag=NDY25_12250;product=MerC domain-containing protein;protein_id=UUF00793.1;transl_table=11 CP098604.1 Genbank gene 2807357 2808682 . + . ID=gene-NDY25_12255;Name=NDY25_12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12255 CP098604.1 Protein Homology CDS 2807357 2808682 . + 0 ID=cds-UUF00794.1;Parent=gene-NDY25_12255;Dbxref=NCBI_GP:UUF00794.1;Name=UUF00794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849151.1;locus_tag=NDY25_12255;product=GTP-binding protein;protein_id=UUF00794.1;transl_table=11 CP098604.1 Genbank gene 2808878 2809996 . - . ID=gene-NDY25_12260;Name=NDY25_12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12260 CP098604.1 Protein Homology CDS 2808878 2809996 . - 0 ID=cds-UUF00795.1;Parent=gene-NDY25_12260;Dbxref=NCBI_GP:UUF00795.1;Name=UUF00795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989050.1;locus_tag=NDY25_12260;product=type III secretions system protein XopR;protein_id=UUF00795.1;transl_table=11 CP098604.1 Genbank gene 2810226 2810672 . - . ID=gene-NDY25_12265;Name=NDY25_12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12265 CP098604.1 Protein Homology CDS 2810226 2810672 . - 0 ID=cds-UUF00796.1;Parent=gene-NDY25_12265;Dbxref=NCBI_GP:UUF00796.1;Name=UUF00796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989052.1;locus_tag=NDY25_12265;product=hypothetical protein;protein_id=UUF00796.1;transl_table=11 CP098604.1 Genbank gene 2811105 2811977 . - . ID=gene-NDY25_12270;Name=NDY25_12270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12270 CP098604.1 Protein Homology CDS 2811105 2811977 . - 0 ID=cds-UUF04636.1;Parent=gene-NDY25_12270;Dbxref=NCBI_GP:UUF04636.1;Name=UUF04636.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379895.1;locus_tag=NDY25_12270;product=hypothetical protein;protein_id=UUF04636.1;transl_table=11 CP098604.1 Genbank gene 2812044 2812706 . + . ID=gene-NDY25_12275;Name=NDY25_12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12275 CP098604.1 Protein Homology CDS 2812044 2812706 . + 0 ID=cds-UUF00797.1;Parent=gene-NDY25_12275;Dbxref=NCBI_GP:UUF00797.1;Name=UUF00797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370426.1;locus_tag=NDY25_12275;product=alpha/beta hydrolase;protein_id=UUF00797.1;transl_table=11 CP098604.1 Genbank gene 2812792 2813886 . + . ID=gene-NDY25_12280;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=NDY25_12280 CP098604.1 Protein Homology CDS 2812792 2813886 . + 0 ID=cds-UUF00798.1;Parent=gene-NDY25_12280;Dbxref=NCBI_GP:UUF00798.1;Name=UUF00798.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974994.1;locus_tag=NDY25_12280;product=cell division protein ZapE;protein_id=UUF00798.1;transl_table=11 CP098604.1 Genbank gene 2814052 2814336 . - . ID=gene-NDY25_12285;Name=NDY25_12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12285 CP098604.1 GeneMarkS-2+ CDS 2814052 2814336 . - 0 ID=cds-UUF00799.1;Parent=gene-NDY25_12285;Dbxref=NCBI_GP:UUF00799.1;Name=UUF00799.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12285;product=hypothetical protein;protein_id=UUF00799.1;transl_table=11 CP098604.1 Genbank gene 2814333 2814869 . - . ID=gene-NDY25_12290;Name=NDY25_12290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12290 CP098604.1 GeneMarkS-2+ CDS 2814333 2814869 . - 0 ID=cds-UUF00800.1;Parent=gene-NDY25_12290;Dbxref=NCBI_GP:UUF00800.1;Name=UUF00800.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12290;product=hypothetical protein;protein_id=UUF00800.1;transl_table=11 CP098604.1 Genbank gene 2815013 2815474 . + . ID=gene-NDY25_12295;Name=NDY25_12295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12295 CP098604.1 Protein Homology CDS 2815013 2815474 . + 0 ID=cds-UUF00801.1;Parent=gene-NDY25_12295;Dbxref=NCBI_GP:UUF00801.1;Name=UUF00801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035518.1;locus_tag=NDY25_12295;product=MarR family transcriptional regulator;protein_id=UUF00801.1;transl_table=11 CP098604.1 Genbank gene 2815581 2816009 . + . ID=gene-NDY25_12300;Name=NDY25_12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12300 CP098604.1 Protein Homology CDS 2815581 2816009 . + 0 ID=cds-UUF00802.1;Parent=gene-NDY25_12300;Dbxref=NCBI_GP:UUF00802.1;Name=UUF00802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007509237.1;locus_tag=NDY25_12300;product=organic hydroperoxide resistance protein;protein_id=UUF00802.1;transl_table=11 CP098604.1 Genbank gene 2816174 2816875 . + . ID=gene-NDY25_12305;Name=NDY25_12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12305 CP098604.1 Protein Homology CDS 2816174 2816875 . + 0 ID=cds-UUF00803.1;Parent=gene-NDY25_12305;Dbxref=NCBI_GP:UUF00803.1;Name=UUF00803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968319.1;locus_tag=NDY25_12305;product=alpha/beta hydrolase;protein_id=UUF00803.1;transl_table=11 CP098604.1 Genbank gene 2816885 2817727 . - . ID=gene-NDY25_12310;Name=NDY25_12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12310 CP098604.1 Protein Homology CDS 2816885 2817727 . - 0 ID=cds-UUF00804.1;Parent=gene-NDY25_12310;Dbxref=NCBI_GP:UUF00804.1;Name=UUF00804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450069.1;locus_tag=NDY25_12310;product=YggN family protein;protein_id=UUF00804.1;transl_table=11 CP098604.1 Genbank gene 2817918 2818334 . + . ID=gene-NDY25_12315;Name=NDY25_12315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12315 CP098604.1 Protein Homology CDS 2817918 2818334 . + 0 ID=cds-UUF00805.1;Parent=gene-NDY25_12315;Dbxref=NCBI_GP:UUF00805.1;Name=UUF00805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928480.1;locus_tag=NDY25_12315;product=hypothetical protein;protein_id=UUF00805.1;transl_table=11 CP098604.1 Genbank gene 2818391 2818693 . - . ID=gene-NDY25_12320;Name=NDY25_12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12320 CP098604.1 Protein Homology CDS 2818391 2818693 . - 0 ID=cds-UUF00806.1;Parent=gene-NDY25_12320;Dbxref=NCBI_GP:UUF00806.1;Name=UUF00806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035523.1;locus_tag=NDY25_12320;product=hypothetical protein;protein_id=UUF00806.1;transl_table=11 CP098604.1 Genbank gene 2818840 2819643 . - . ID=gene-NDY25_12325;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=NDY25_12325 CP098604.1 Protein Homology CDS 2818840 2819643 . - 0 ID=cds-UUF00807.1;Parent=gene-NDY25_12325;Dbxref=NCBI_GP:UUF00807.1;Name=UUF00807.1;Ontology_term=GO:0047834;gbkey=CDS;gene=dkgB;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260799.1;locus_tag=NDY25_12325;product=2%2C5-didehydrogluconate reductase DkgB;protein_id=UUF00807.1;transl_table=11 CP098604.1 Genbank gene 2819719 2820747 . - . ID=gene-NDY25_12330;Name=NDY25_12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12330 CP098604.1 Protein Homology CDS 2819719 2820747 . - 0 ID=cds-UUF00808.1;Parent=gene-NDY25_12330;Dbxref=NCBI_GP:UUF00808.1;Name=UUF00808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345999.1;locus_tag=NDY25_12330;product=NADP-dependent oxidoreductase;protein_id=UUF00808.1;transl_table=11 CP098604.1 Genbank gene 2820860 2821831 . - . ID=gene-NDY25_12335;Name=NDY25_12335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12335 CP098604.1 Protein Homology CDS 2820860 2821831 . - 0 ID=cds-UUF00809.1;Parent=gene-NDY25_12335;Dbxref=NCBI_GP:UUF00809.1;Name=UUF00809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379903.1;locus_tag=NDY25_12335;product=aldo/keto reductase;protein_id=UUF00809.1;transl_table=11 CP098604.1 Genbank gene 2822054 2822908 . + . ID=gene-NDY25_12340;Name=NDY25_12340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12340 CP098604.1 Protein Homology CDS 2822054 2822908 . + 0 ID=cds-UUF00810.1;Parent=gene-NDY25_12340;Dbxref=NCBI_GP:UUF00810.1;Name=UUF00810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912328.1;locus_tag=NDY25_12340;product=methyltransferase;protein_id=UUF00810.1;transl_table=11 CP098604.1 Genbank gene 2823044 2823616 . + . ID=gene-NDY25_12345;Name=NDY25_12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12345 CP098604.1 Protein Homology CDS 2823044 2823616 . + 0 ID=cds-UUF00811.1;Parent=gene-NDY25_12345;Dbxref=NCBI_GP:UUF00811.1;Name=UUF00811.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156080.1;locus_tag=NDY25_12345;product=pseudouridine synthase;protein_id=UUF00811.1;transl_table=11 CP098604.1 Genbank gene 2823707 2824138 . - . ID=gene-NDY25_12350;Name=NDY25_12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12350 CP098604.1 Protein Homology CDS 2823707 2824138 . - 0 ID=cds-UUF00812.1;Parent=gene-NDY25_12350;Dbxref=NCBI_GP:UUF00812.1;Name=UUF00812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160523.1;locus_tag=NDY25_12350;product=hypothetical protein;protein_id=UUF00812.1;transl_table=11 CP098604.1 Genbank gene 2824444 2826945 . - . ID=gene-NDY25_12355;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=NDY25_12355 CP098604.1 Protein Homology CDS 2824444 2826945 . - 0 ID=cds-UUF00813.1;Parent=gene-NDY25_12355;Dbxref=NCBI_GP:UUF00813.1;Name=UUF00813.1;Ontology_term=GO:0006139,GO:0004386;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050223.1;locus_tag=NDY25_12355;product=ATP-dependent helicase HrpB;protein_id=UUF00813.1;transl_table=11 CP098604.1 Genbank gene 2827273 2829246 . + . ID=gene-NDY25_12360;Name=NDY25_12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12360 CP098604.1 Protein Homology CDS 2827273 2829246 . + 0 ID=cds-UUF04637.1;Parent=gene-NDY25_12360;Dbxref=NCBI_GP:UUF04637.1;Name=UUF04637.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035531.1;locus_tag=NDY25_12360;product=methyl-accepting chemotaxis protein;protein_id=UUF04637.1;transl_table=11 CP098604.1 Genbank gene 2830287 2830760 . - . ID=gene-NDY25_12365;Name=NDY25_12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12365 CP098604.1 Protein Homology CDS 2830287 2830760 . - 0 ID=cds-UUF00814.1;Parent=gene-NDY25_12365;Dbxref=NCBI_GP:UUF00814.1;Name=UUF00814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505316.1;locus_tag=NDY25_12365;product=DUF1456 family protein;protein_id=UUF00814.1;transl_table=11 CP098604.1 Genbank gene 2830865 2831224 . - . ID=gene-NDY25_12370;Name=uraH;gbkey=Gene;gene=uraH;gene_biotype=protein_coding;locus_tag=NDY25_12370 CP098604.1 Protein Homology CDS 2830865 2831224 . - 0 ID=cds-UUF00815.1;Parent=gene-NDY25_12370;Dbxref=NCBI_GP:UUF00815.1;Name=UUF00815.1;Ontology_term=GO:0019628;gbkey=CDS;gene=uraH;go_process=urate catabolic process|0019628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370375.1;locus_tag=NDY25_12370;product=hydroxyisourate hydrolase;protein_id=UUF00815.1;transl_table=11 CP098604.1 Genbank gene 2831194 2832615 . - . ID=gene-NDY25_12375;Name=hpyO;gbkey=Gene;gene=hpyO;gene_biotype=protein_coding;locus_tag=NDY25_12375 CP098604.1 Protein Homology CDS 2831194 2832615 . - 0 ID=cds-UUF00816.1;Parent=gene-NDY25_12375;Dbxref=NCBI_GP:UUF00816.1;Name=UUF00816.1;gbkey=CDS;gene=hpyO;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509374.1;locus_tag=NDY25_12375;product=FAD-dependent urate hydroxylase HpyO;protein_id=UUF00816.1;transl_table=11 CP098604.1 Genbank gene 2832612 2833103 . - . ID=gene-NDY25_12380;Name=uraD;gbkey=Gene;gene=uraD;gene_biotype=protein_coding;locus_tag=NDY25_12380 CP098604.1 Protein Homology CDS 2832612 2833103 . - 0 ID=cds-UUF00817.1;Parent=gene-NDY25_12380;Dbxref=NCBI_GP:UUF00817.1;Name=UUF00817.1;Ontology_term=GO:0019628;gbkey=CDS;gene=uraD;go_process=urate catabolic process|0019628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572333.1;locus_tag=NDY25_12380;product=2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase;protein_id=UUF00817.1;transl_table=11 CP098604.1 Genbank gene 2833100 2833495 . - . ID=gene-NDY25_12385;Name=hpxZ;gbkey=Gene;gene=hpxZ;gene_biotype=protein_coding;locus_tag=NDY25_12385 CP098604.1 Protein Homology CDS 2833100 2833495 . - 0 ID=cds-UUF00818.1;Parent=gene-NDY25_12385;Dbxref=NCBI_GP:UUF00818.1;Name=UUF00818.1;gbkey=CDS;gene=hpxZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450976.1;locus_tag=NDY25_12385;product=oxalurate catabolism protein HpxZ;protein_id=UUF00818.1;transl_table=11 CP098604.1 Genbank gene 2833492 2834382 . - . ID=gene-NDY25_12390;Name=puuE;gbkey=Gene;gene=puuE;gene_biotype=protein_coding;locus_tag=NDY25_12390 CP098604.1 Protein Homology CDS 2833492 2834382 . - 0 ID=cds-UUF00819.1;Parent=gene-NDY25_12390;Dbxref=NCBI_GP:UUF00819.1;Name=UUF00819.1;Ontology_term=GO:0000256,GO:0016810;gbkey=CDS;gene=puuE;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=allantoin catabolic process|0000256||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156075.1;locus_tag=NDY25_12390;product=allantoinase PuuE;protein_id=UUF00819.1;transl_table=11 CP098604.1 Genbank gene 2834379 2835635 . - . ID=gene-NDY25_12395;Name=NDY25_12395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12395 CP098604.1 Protein Homology CDS 2834379 2835635 . - 0 ID=cds-UUF00820.1;Parent=gene-NDY25_12395;Dbxref=NCBI_GP:UUF00820.1;Name=UUF00820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379922.1;locus_tag=NDY25_12395;product=alanine--glyoxylate aminotransferase family protein;protein_id=UUF00820.1;transl_table=11 CP098604.1 Genbank gene 2835625 2836899 . - . ID=gene-NDY25_12400;Name=NDY25_12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12400 CP098604.1 Protein Homology CDS 2835625 2836899 . - 0 ID=cds-UUF00821.1;Parent=gene-NDY25_12400;Dbxref=NCBI_GP:UUF00821.1;Name=UUF00821.1;Ontology_term=GO:0016813;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amidines|0016813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450979.1;locus_tag=NDY25_12400;product=allantoate amidohydrolase;protein_id=UUF00821.1;transl_table=11 CP098604.1 Genbank gene 2837670 2838563 . + . ID=gene-NDY25_12405;Name=NDY25_12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12405 CP098604.1 Protein Homology CDS 2837670 2838563 . + 0 ID=cds-UUF00822.1;Parent=gene-NDY25_12405;Dbxref=NCBI_GP:UUF00822.1;Name=UUF00822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471607.1;locus_tag=NDY25_12405;product=LysR family transcriptional regulator;protein_id=UUF00822.1;transl_table=11 CP098604.1 Genbank gene 2838883 2840082 . + . ID=gene-NDY25_12410;Name=NDY25_12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12410 CP098604.1 Protein Homology CDS 2838883 2840082 . + 0 ID=cds-UUF00823.1;Parent=gene-NDY25_12410;Dbxref=NCBI_GP:UUF00823.1;Name=UUF00823.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915170.1;locus_tag=NDY25_12410;product=MFS transporter;protein_id=UUF00823.1;transl_table=11 CP098604.1 Genbank gene 2840176 2841066 . - . ID=gene-NDY25_12415;Name=NDY25_12415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12415 CP098604.1 Protein Homology CDS 2840176 2841066 . - 0 ID=cds-UUF00824.1;Parent=gene-NDY25_12415;Dbxref=NCBI_GP:UUF00824.1;Name=UUF00824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975014.1;locus_tag=NDY25_12415;product=LysR family transcriptional regulator;protein_id=UUF00824.1;transl_table=11 CP098604.1 Genbank gene 2841289 2842347 . + . ID=gene-NDY25_12420;Name=NDY25_12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12420 CP098604.1 Protein Homology CDS 2841289 2842347 . + 0 ID=cds-UUF00825.1;Parent=gene-NDY25_12420;Dbxref=NCBI_GP:UUF00825.1;Name=UUF00825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901432.1;locus_tag=NDY25_12420;product=alpha/beta hydrolase;protein_id=UUF00825.1;transl_table=11 CP098604.1 Genbank pseudogene 2842462 2844966 . + . ID=gene-NDY25_12425;Name=NDY25_12425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12425;pseudo=true CP098604.1 Protein Homology CDS 2842462 2844966 . + 0 ID=cds-NDY25_12425;Parent=gene-NDY25_12425;Note=internal stop;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009607500.1;locus_tag=NDY25_12425;product=prolyl oligopeptidase family serine peptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2845117 2846409 . - . ID=gene-NDY25_12430;Name=NDY25_12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12430 CP098604.1 GeneMarkS-2+ CDS 2845117 2846409 . - 0 ID=cds-UUF00826.1;Parent=gene-NDY25_12430;Dbxref=NCBI_GP:UUF00826.1;Name=UUF00826.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12430;product=hypothetical protein;protein_id=UUF00826.1;transl_table=11 CP098604.1 Genbank gene 2846516 2846710 . - . ID=gene-NDY25_12435;Name=NDY25_12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12435 CP098604.1 GeneMarkS-2+ CDS 2846516 2846710 . - 0 ID=cds-UUF00827.1;Parent=gene-NDY25_12435;Dbxref=NCBI_GP:UUF00827.1;Name=UUF00827.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12435;product=hypothetical protein;protein_id=UUF00827.1;transl_table=11 CP098604.1 Genbank gene 2846896 2847354 . - . ID=gene-NDY25_12440;Name=NDY25_12440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12440 CP098604.1 Protein Homology CDS 2846896 2847354 . - 0 ID=cds-UUF00828.1;Parent=gene-NDY25_12440;Dbxref=NCBI_GP:UUF00828.1;Name=UUF00828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968357.1;locus_tag=NDY25_12440;product=gas vesicle protein;protein_id=UUF00828.1;transl_table=11 CP098604.1 Genbank gene 2848038 2848328 . + . ID=gene-NDY25_12445;Name=NDY25_12445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12445 CP098604.1 GeneMarkS-2+ CDS 2848038 2848328 . + 0 ID=cds-UUF00829.1;Parent=gene-NDY25_12445;Dbxref=NCBI_GP:UUF00829.1;Name=UUF00829.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12445;product=UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase;protein_id=UUF00829.1;transl_table=11 CP098604.1 Genbank gene 2848419 2849399 . - . ID=gene-NDY25_12450;Name=NDY25_12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12450 CP098604.1 Protein Homology CDS 2848419 2849399 . - 0 ID=cds-UUF00830.1;Parent=gene-NDY25_12450;Dbxref=NCBI_GP:UUF00830.1;Name=UUF00830.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_12450;product=IS5 family transposase;protein_id=UUF00830.1;transl_table=11 CP098604.1 Genbank gene 2849578 2850558 . - . ID=gene-NDY25_12455;Name=NDY25_12455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12455 CP098604.1 Protein Homology CDS 2849578 2850558 . - 0 ID=cds-UUF00831.1;Parent=gene-NDY25_12455;Dbxref=NCBI_GP:UUF00831.1;Name=UUF00831.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_12455;product=IS5 family transposase;protein_id=UUF00831.1;transl_table=11 CP098604.1 Genbank gene 2850912 2851793 . + . ID=gene-NDY25_12460;Name=NDY25_12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12460 CP098604.1 GeneMarkS-2+ CDS 2850912 2851793 . + 0 ID=cds-UUF00832.1;Parent=gene-NDY25_12460;Dbxref=NCBI_GP:UUF00832.1;Name=UUF00832.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12460;product=hypothetical protein;protein_id=UUF00832.1;transl_table=11 CP098604.1 Genbank gene 2851914 2853767 . - . ID=gene-NDY25_12465;Name=NDY25_12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12465 CP098604.1 Protein Homology CDS 2851914 2853767 . - 0 ID=cds-UUF00833.1;Parent=gene-NDY25_12465;Dbxref=NCBI_GP:UUF00833.1;Name=UUF00833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449189.1;locus_tag=NDY25_12465;product=hypothetical protein;protein_id=UUF00833.1;transl_table=11 CP098604.1 Genbank gene 2853782 2854312 . - . ID=gene-NDY25_12470;Name=NDY25_12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12470 CP098604.1 GeneMarkS-2+ CDS 2853782 2854312 . - 0 ID=cds-UUF00834.1;Parent=gene-NDY25_12470;Dbxref=NCBI_GP:UUF00834.1;Name=UUF00834.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12470;product=hypothetical protein;protein_id=UUF00834.1;transl_table=11 CP098604.1 Genbank gene 2854543 2856123 . - . ID=gene-NDY25_12475;Name=NDY25_12475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12475 CP098604.1 Protein Homology CDS 2854543 2856123 . - 0 ID=cds-UUF00835.1;Parent=gene-NDY25_12475;Dbxref=NCBI_GP:UUF00835.1;Name=UUF00835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156069.1;locus_tag=NDY25_12475;product=gamma-glutamyltransferase family protein;protein_id=UUF00835.1;transl_table=11 CP098604.1 Genbank gene 2856123 2857583 . - . ID=gene-NDY25_12480;Name=NDY25_12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12480 CP098604.1 Protein Homology CDS 2856123 2857583 . - 0 ID=cds-UUF00836.1;Parent=gene-NDY25_12480;Dbxref=NCBI_GP:UUF00836.1;Name=UUF00836.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035547.1;locus_tag=NDY25_12480;product=AtzE family amidohydrolase;protein_id=UUF00836.1;transl_table=11 CP098604.1 Genbank pseudogene 2857747 2858880 . - . ID=gene-NDY25_12485;Name=NDY25_12485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12485;pseudo=true CP098604.1 Protein Homology CDS 2857747 2858880 . - 0 ID=cds-NDY25_12485;Parent=gene-NDY25_12485;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450044.1;locus_tag=NDY25_12485;product=nucleoside hydrolase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2859027 2860595 . - . ID=gene-NDY25_12490;Name=NDY25_12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12490 CP098604.1 Protein Homology CDS 2859027 2860595 . - 0 ID=cds-UUF00837.1;Parent=gene-NDY25_12490;Dbxref=NCBI_GP:UUF00837.1;Name=UUF00837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437080.1;locus_tag=NDY25_12490;product=adenosine deaminase;protein_id=UUF00837.1;transl_table=11 CP098604.1 Genbank gene 2860714 2862027 . - . ID=gene-NDY25_12495;Name=NDY25_12495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12495 CP098604.1 Protein Homology CDS 2860714 2862027 . - 0 ID=cds-UUF00838.1;Parent=gene-NDY25_12495;Dbxref=NCBI_GP:UUF00838.1;Name=UUF00838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363907.1;locus_tag=NDY25_12495;product=NCS2 family permease;protein_id=UUF00838.1;transl_table=11 CP098604.1 Genbank gene 2862428 2863387 . - . ID=gene-NDY25_12500;Name=NDY25_12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12500 CP098604.1 Protein Homology CDS 2862428 2863387 . - 0 ID=cds-UUF00839.1;Parent=gene-NDY25_12500;Dbxref=NCBI_GP:UUF00839.1;Name=UUF00839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489422.1;locus_tag=NDY25_12500;product=PDR/VanB family oxidoreductase;protein_id=UUF00839.1;transl_table=11 CP098604.1 Genbank gene 2863405 2864457 . - . ID=gene-NDY25_12505;Name=NDY25_12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12505 CP098604.1 Protein Homology CDS 2863405 2864457 . - 0 ID=cds-UUF00840.1;Parent=gene-NDY25_12505;Dbxref=NCBI_GP:UUF00840.1;Name=UUF00840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450040.1;locus_tag=NDY25_12505;product=aromatic ring-hydroxylating dioxygenase subunit alpha;protein_id=UUF00840.1;transl_table=11 CP098604.1 Genbank gene 2864585 2865502 . + . ID=gene-NDY25_12510;Name=NDY25_12510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12510 CP098604.1 Protein Homology CDS 2864585 2865502 . + 0 ID=cds-UUF00841.1;Parent=gene-NDY25_12510;Dbxref=NCBI_GP:UUF00841.1;Name=UUF00841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944217.1;locus_tag=NDY25_12510;product=LysR family transcriptional regulator;protein_id=UUF00841.1;transl_table=11 CP098604.1 Genbank gene 2865756 2866562 . + . ID=gene-NDY25_12515;Name=NDY25_12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12515 CP098604.1 Protein Homology CDS 2865756 2866562 . + 0 ID=cds-UUF00842.1;Parent=gene-NDY25_12515;Dbxref=NCBI_GP:UUF00842.1;Name=UUF00842.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802671.1;locus_tag=NDY25_12515;product=TatD family hydrolase;protein_id=UUF00842.1;transl_table=11 CP098604.1 Genbank gene 2866581 2867249 . - . ID=gene-NDY25_12520;Name=NDY25_12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12520 CP098604.1 Protein Homology CDS 2866581 2867249 . - 0 ID=cds-UUF00843.1;Parent=gene-NDY25_12520;Dbxref=NCBI_GP:UUF00843.1;Name=UUF00843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848809.1;locus_tag=NDY25_12520;product=hypothetical protein;protein_id=UUF00843.1;transl_table=11 CP098604.1 Genbank gene 2867446 2868333 . - . ID=gene-NDY25_12525;Name=NDY25_12525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12525 CP098604.1 Protein Homology CDS 2867446 2868333 . - 0 ID=cds-UUF00844.1;Parent=gene-NDY25_12525;Dbxref=NCBI_GP:UUF00844.1;Name=UUF00844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167667.1;locus_tag=NDY25_12525;product=LysR family transcriptional regulator;protein_id=UUF00844.1;transl_table=11 CP098604.1 Genbank gene 2868431 2869720 . + . ID=gene-NDY25_12530;Name=NDY25_12530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12530 CP098604.1 Protein Homology CDS 2868431 2869720 . + 0 ID=cds-UUF00845.1;Parent=gene-NDY25_12530;Dbxref=NCBI_GP:UUF00845.1;Name=UUF00845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471612.1;locus_tag=NDY25_12530;product=MFS transporter;protein_id=UUF00845.1;transl_table=11 CP098604.1 Genbank gene 2869776 2870213 . - . ID=gene-NDY25_12535;Name=NDY25_12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12535 CP098604.1 Protein Homology CDS 2869776 2870213 . - 0 ID=cds-UUF00846.1;Parent=gene-NDY25_12535;Dbxref=NCBI_GP:UUF00846.1;Name=UUF00846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968372.1;locus_tag=NDY25_12535;product=MerR family transcriptional regulator;protein_id=UUF00846.1;transl_table=11 CP098604.1 Genbank gene 2870303 2871238 . + . ID=gene-NDY25_12540;Name=NDY25_12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12540 CP098604.1 Protein Homology CDS 2870303 2871238 . + 0 ID=cds-UUF00847.1;Parent=gene-NDY25_12540;Dbxref=NCBI_GP:UUF00847.1;Name=UUF00847.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975045.1;locus_tag=NDY25_12540;product=alpha/beta hydrolase;protein_id=UUF00847.1;transl_table=11 CP098604.1 Genbank gene 2871356 2872366 . - . ID=gene-NDY25_12545;Name=NDY25_12545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12545 CP098604.1 Protein Homology CDS 2871356 2872366 . - 0 ID=cds-UUF00848.1;Parent=gene-NDY25_12545;Dbxref=NCBI_GP:UUF00848.1;Name=UUF00848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989138.1;locus_tag=NDY25_12545;product=nuclease;protein_id=UUF00848.1;transl_table=11 CP098604.1 Genbank gene 2872468 2874954 . - . ID=gene-NDY25_12550;Name=NDY25_12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12550 CP098604.1 Protein Homology CDS 2872468 2874954 . - 0 ID=cds-UUF00849.1;Parent=gene-NDY25_12550;Dbxref=NCBI_GP:UUF00849.1;Name=UUF00849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005989141.1;locus_tag=NDY25_12550;product=TonB-dependent receptor;protein_id=UUF00849.1;transl_table=11 CP098604.1 Genbank gene 2875409 2876041 . + . ID=gene-NDY25_12555;Name=NDY25_12555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12555 CP098604.1 Protein Homology CDS 2875409 2876041 . + 0 ID=cds-UUF00850.1;Parent=gene-NDY25_12555;Dbxref=NCBI_GP:UUF00850.1;Name=UUF00850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369084.1;locus_tag=NDY25_12555;product=TetR/AcrR family transcriptional regulator;protein_id=UUF00850.1;transl_table=11 CP098604.1 Genbank gene 2876038 2876919 . + . ID=gene-NDY25_12560;Name=NDY25_12560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12560 CP098604.1 Protein Homology CDS 2876038 2876919 . + 0 ID=cds-UUF00851.1;Parent=gene-NDY25_12560;Dbxref=NCBI_GP:UUF00851.1;Name=UUF00851.1;Ontology_term=GO:0070403;gbkey=CDS;go_function=NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802675.1;locus_tag=NDY25_12560;product=NAD-dependent protein deacetylase;protein_id=UUF00851.1;transl_table=11 CP098604.1 Genbank gene 2876980 2878098 . + . ID=gene-NDY25_12565;Name=NDY25_12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12565 CP098604.1 Protein Homology CDS 2876980 2878098 . + 0 ID=cds-UUF04638.1;Parent=gene-NDY25_12565;Dbxref=NCBI_GP:UUF04638.1;Name=UUF04638.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157627.1;locus_tag=NDY25_12565;product=NADH:flavin oxidoreductase/NADH oxidase;protein_id=UUF04638.1;transl_table=11 CP098604.1 Genbank gene 2878181 2879059 . + . ID=gene-NDY25_12570;Name=NDY25_12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12570 CP098604.1 Protein Homology CDS 2878181 2879059 . + 0 ID=cds-UUF00852.1;Parent=gene-NDY25_12570;Dbxref=NCBI_GP:UUF00852.1;Name=UUF00852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304345.1;locus_tag=NDY25_12570;product=NAD(P)-dependent oxidoreductase;protein_id=UUF00852.1;transl_table=11 CP098604.1 Genbank gene 2879273 2879665 . + . ID=gene-NDY25_12575;Name=NDY25_12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12575 CP098604.1 Protein Homology CDS 2879273 2879665 . + 0 ID=cds-UUF00853.1;Parent=gene-NDY25_12575;Dbxref=NCBI_GP:UUF00853.1;Name=UUF00853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304344.1;locus_tag=NDY25_12575;product=hypothetical protein;protein_id=UUF00853.1;transl_table=11 CP098604.1 Genbank gene 2879734 2880585 . + . ID=gene-NDY25_12580;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=NDY25_12580 CP098604.1 Protein Homology CDS 2879734 2880585 . + 0 ID=cds-UUF00854.1;Parent=gene-NDY25_12580;Dbxref=NCBI_GP:UUF00854.1;Name=UUF00854.1;Ontology_term=GO:0009152,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237160.1;locus_tag=NDY25_12580;product=formyltetrahydrofolate deformylase;protein_id=UUF00854.1;transl_table=11 CP098604.1 Genbank gene 2880729 2881868 . + . ID=gene-NDY25_12585;Name=NDY25_12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12585 CP098604.1 Protein Homology CDS 2880729 2881868 . + 0 ID=cds-UUF00855.1;Parent=gene-NDY25_12585;Dbxref=NCBI_GP:UUF00855.1;Name=UUF00855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004147013.1;locus_tag=NDY25_12585;product=MFS transporter;protein_id=UUF00855.1;transl_table=11 CP098604.1 Genbank gene 2881954 2882655 . - . ID=gene-NDY25_12590;Name=NDY25_12590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12590 CP098604.1 Protein Homology CDS 2881954 2882655 . - 0 ID=cds-UUF00856.1;Parent=gene-NDY25_12590;Dbxref=NCBI_GP:UUF00856.1;Name=UUF00856.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901480.1;locus_tag=NDY25_12590;product=response regulator;protein_id=UUF00856.1;transl_table=11 CP098604.1 Genbank gene 2882655 2884034 . - . ID=gene-NDY25_12595;Name=baeS;gbkey=Gene;gene=baeS;gene_biotype=protein_coding;locus_tag=NDY25_12595 CP098604.1 Protein Homology CDS 2882655 2884034 . - 0 ID=cds-UUF00857.1;Parent=gene-NDY25_12595;Dbxref=NCBI_GP:UUF00857.1;Name=UUF00857.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016021;gbkey=CDS;gene=baeS;go_component=integral component of membrane|0016021||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346030.1;locus_tag=NDY25_12595;product=sensor histidine kinase efflux regulator BaeS;protein_id=UUF00857.1;transl_table=11 CP098604.1 Genbank gene 2884285 2885562 . + . ID=gene-NDY25_12600;Name=NDY25_12600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12600 CP098604.1 Protein Homology CDS 2884285 2885562 . + 0 ID=cds-UUF00858.1;Parent=gene-NDY25_12600;Dbxref=NCBI_GP:UUF00858.1;Name=UUF00858.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901482.1;locus_tag=NDY25_12600;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF00858.1;transl_table=11 CP098604.1 Genbank gene 2885572 2888721 . + . ID=gene-NDY25_12605;Name=NDY25_12605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12605 CP098604.1 Protein Homology CDS 2885572 2888721 . + 0 ID=cds-UUF00859.1;Parent=gene-NDY25_12605;Dbxref=NCBI_GP:UUF00859.1;Name=UUF00859.1;Ontology_term=GO:0006810,GO:0015562,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471616.1;locus_tag=NDY25_12605;product=efflux RND transporter permease subunit;protein_id=UUF00859.1;transl_table=11 CP098604.1 Genbank gene 2888718 2890151 . + . ID=gene-NDY25_12610;Name=NDY25_12610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12610 CP098604.1 Protein Homology CDS 2888718 2890151 . + 0 ID=cds-UUF00860.1;Parent=gene-NDY25_12610;Dbxref=NCBI_GP:UUF00860.1;Name=UUF00860.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901483.1;locus_tag=NDY25_12610;product=efflux transporter outer membrane subunit;protein_id=UUF00860.1;transl_table=11 CP098604.1 Genbank gene 2890824 2892782 . - . ID=gene-NDY25_12615;Name=NDY25_12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12615 CP098604.1 Protein Homology CDS 2890824 2892782 . - 0 ID=cds-UUF00861.1;Parent=gene-NDY25_12615;Dbxref=NCBI_GP:UUF00861.1;Name=UUF00861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915212.1;locus_tag=NDY25_12615;product=conditioned medium factor;protein_id=UUF00861.1;transl_table=11 CP098604.1 Genbank gene 2893092 2893991 . - . ID=gene-NDY25_12620;Name=NDY25_12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12620 CP098604.1 Protein Homology CDS 2893092 2893991 . - 0 ID=cds-UUF00862.1;Parent=gene-NDY25_12620;Dbxref=NCBI_GP:UUF00862.1;Name=UUF00862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157617.1;locus_tag=NDY25_12620;product=methylenetetrahydrofolate reductase;protein_id=UUF00862.1;transl_table=11 CP098604.1 Genbank gene 2894111 2894776 . - . ID=gene-NDY25_12625;Name=NDY25_12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12625 CP098604.1 Protein Homology CDS 2894111 2894776 . - 0 ID=cds-UUF04639.1;Parent=gene-NDY25_12625;Dbxref=NCBI_GP:UUF04639.1;Name=UUF04639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346036.1;locus_tag=NDY25_12625;product=epoxyqueuosine reductase QueH;protein_id=UUF04639.1;transl_table=11 CP098604.1 Genbank pseudogene 2894813 2895712 . - . ID=gene-NDY25_12630;Name=NDY25_12630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12630;pseudo=true CP098604.1 Protein Homology CDS 2894813 2895712 . - 0 ID=cds-NDY25_12630;Parent=gene-NDY25_12630;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089083.1;locus_tag=NDY25_12630;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2895860 2896402 . + . ID=gene-NDY25_12635;Name=msuE;gbkey=Gene;gene=msuE;gene_biotype=protein_coding;locus_tag=NDY25_12635 CP098604.1 Protein Homology CDS 2895860 2896402 . + 0 ID=cds-UUF00863.1;Parent=gene-NDY25_12635;Dbxref=NCBI_GP:UUF00863.1;Name=UUF00863.1;Ontology_term=GO:0016491;gbkey=CDS;gene=msuE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019659752.1;locus_tag=NDY25_12635;product=FMN reductase;protein_id=UUF00863.1;transl_table=11 CP098604.1 Genbank gene 2896571 2897572 . + . ID=gene-NDY25_12640;Name=NDY25_12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12640 CP098604.1 Protein Homology CDS 2896571 2897572 . + 0 ID=cds-UUF04640.1;Parent=gene-NDY25_12640;Dbxref=NCBI_GP:UUF04640.1;Name=UUF04640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452644.1;locus_tag=NDY25_12640;product=DUF1852 domain-containing protein;protein_id=UUF04640.1;transl_table=11 CP098604.1 Genbank gene 2897601 2898632 . + . ID=gene-NDY25_12645;Name=NDY25_12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12645 CP098604.1 Protein Homology CDS 2897601 2898632 . + 0 ID=cds-UUF00864.1;Parent=gene-NDY25_12645;Dbxref=NCBI_GP:UUF00864.1;Name=UUF00864.1;Ontology_term=GO:0009086,GO:0003871;gbkey=CDS;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509336.1;locus_tag=NDY25_12645;product=methionine synthase;protein_id=UUF00864.1;transl_table=11 CP098604.1 Genbank gene 2898785 2900230 . - . ID=gene-NDY25_12650;Name=NDY25_12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12650 CP098604.1 Protein Homology CDS 2898785 2900230 . - 0 ID=cds-UUF00865.1;Parent=gene-NDY25_12650;Dbxref=NCBI_GP:UUF00865.1;Name=UUF00865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488991.1;locus_tag=NDY25_12650;product=OprO/OprP family phosphate-selective porin;protein_id=UUF00865.1;transl_table=11 CP098604.1 Genbank gene 2900841 2901731 . - . ID=gene-NDY25_12655;Name=NDY25_12655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12655 CP098604.1 Protein Homology CDS 2900841 2901731 . - 0 ID=cds-UUF00866.1;Parent=gene-NDY25_12655;Dbxref=NCBI_GP:UUF00866.1;Name=UUF00866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452640.1;locus_tag=NDY25_12655;product=SDR family oxidoreductase;protein_id=UUF00866.1;transl_table=11 CP098604.1 Genbank gene 2901866 2902300 . + . ID=gene-NDY25_12660;Name=NDY25_12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12660 CP098604.1 Protein Homology CDS 2901866 2902300 . + 0 ID=cds-UUF00867.1;Parent=gene-NDY25_12660;Dbxref=NCBI_GP:UUF00867.1;Name=UUF00867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505072.1;locus_tag=NDY25_12660;product=helix-turn-helix transcriptional regulator;protein_id=UUF00867.1;transl_table=11 CP098604.1 Genbank gene 2902535 2904112 . - . ID=gene-NDY25_12665;Name=NDY25_12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12665 CP098604.1 Protein Homology CDS 2902535 2904112 . - 0 ID=cds-UUF00868.1;Parent=gene-NDY25_12665;Dbxref=NCBI_GP:UUF00868.1;Name=UUF00868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011103324.1;locus_tag=NDY25_12665;product=type III effector;protein_id=UUF00868.1;transl_table=11 CP098604.1 Genbank gene 2905211 2905516 . - . ID=gene-NDY25_12670;Name=NDY25_12670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12670 CP098604.1 Protein Homology CDS 2905211 2905516 . - 0 ID=cds-UUF00869.1;Parent=gene-NDY25_12670;Dbxref=NCBI_GP:UUF00869.1;Name=UUF00869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300601.1;locus_tag=NDY25_12670;product=hypothetical protein;protein_id=UUF00869.1;transl_table=11 CP098604.1 Genbank gene 2905513 2905956 . - . ID=gene-NDY25_12675;Name=NDY25_12675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12675 CP098604.1 Protein Homology CDS 2905513 2905956 . - 0 ID=cds-UUF00870.1;Parent=gene-NDY25_12675;Dbxref=NCBI_GP:UUF00870.1;Name=UUF00870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995372.1;locus_tag=NDY25_12675;product=DUF5329 domain-containing protein;protein_id=UUF00870.1;transl_table=11 CP098604.1 Genbank gene 2906056 2906847 . - . ID=gene-NDY25_12680;Name=NDY25_12680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12680 CP098604.1 Protein Homology CDS 2906056 2906847 . - 0 ID=cds-UUF00871.1;Parent=gene-NDY25_12680;Dbxref=NCBI_GP:UUF00871.1;Name=UUF00871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995374.1;locus_tag=NDY25_12680;product=hypothetical protein;protein_id=UUF00871.1;transl_table=11 CP098604.1 Genbank gene 2907248 2908054 . - . ID=gene-NDY25_12685;Name=NDY25_12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12685 CP098604.1 Protein Homology CDS 2907248 2908054 . - 0 ID=cds-UUF00872.1;Parent=gene-NDY25_12685;Dbxref=NCBI_GP:UUF00872.1;Name=UUF00872.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801519.1;locus_tag=NDY25_12685;product=IS5 family transposase;protein_id=UUF00872.1;transl_table=11 CP098604.1 Genbank gene 2908150 2908395 . - . ID=gene-NDY25_12690;Name=NDY25_12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12690 CP098604.1 Protein Homology CDS 2908150 2908395 . - 0 ID=cds-UUF00873.1;Parent=gene-NDY25_12690;Dbxref=NCBI_GP:UUF00873.1;Name=UUF00873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019465706.1;locus_tag=NDY25_12690;product=hypothetical protein;protein_id=UUF00873.1;transl_table=11 CP098604.1 Genbank gene 2908382 2908585 . - . ID=gene-NDY25_12695;Name=NDY25_12695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12695 CP098604.1 GeneMarkS-2+ CDS 2908382 2908585 . - 0 ID=cds-UUF00874.1;Parent=gene-NDY25_12695;Dbxref=NCBI_GP:UUF00874.1;Name=UUF00874.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12695;product=hypothetical protein;protein_id=UUF00874.1;transl_table=11 CP098604.1 Genbank gene 2909058 2909306 . - . ID=gene-NDY25_12700;Name=NDY25_12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12700 CP098604.1 Protein Homology CDS 2909058 2909306 . - 0 ID=cds-UUF00875.1;Parent=gene-NDY25_12700;Dbxref=NCBI_GP:UUF00875.1;Name=UUF00875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448538.1;locus_tag=NDY25_12700;product=hypothetical protein;protein_id=UUF00875.1;transl_table=11 CP098604.1 Genbank gene 2909408 2909758 . - . ID=gene-NDY25_12705;Name=NDY25_12705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12705 CP098604.1 Protein Homology CDS 2909408 2909758 . - 0 ID=cds-UUF00876.1;Parent=gene-NDY25_12705;Dbxref=NCBI_GP:UUF00876.1;Name=UUF00876.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913224.1;locus_tag=NDY25_12705;product=SymE family type I addiction module toxin;protein_id=UUF00876.1;transl_table=11 CP098604.1 Genbank gene 2910275 2910940 . + . ID=gene-NDY25_12710;Name=NDY25_12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12710 CP098604.1 GeneMarkS-2+ CDS 2910275 2910940 . + 0 ID=cds-UUF00877.1;Parent=gene-NDY25_12710;Dbxref=NCBI_GP:UUF00877.1;Name=UUF00877.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12710;product=hypothetical protein;protein_id=UUF00877.1;transl_table=11 CP098604.1 Genbank gene 2910960 2912411 . + . ID=gene-NDY25_12715;Name=NDY25_12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12715 CP098604.1 Protein Homology CDS 2910960 2912411 . + 0 ID=cds-UUF00878.1;Parent=gene-NDY25_12715;Dbxref=NCBI_GP:UUF00878.1;Name=UUF00878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012436950.1;locus_tag=NDY25_12715;product=hypothetical protein;protein_id=UUF00878.1;transl_table=11 CP098604.1 Genbank gene 2913154 2914116 . + . ID=gene-NDY25_12720;Name=NDY25_12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12720 CP098604.1 Protein Homology CDS 2913154 2914116 . + 0 ID=cds-UUF00879.1;Parent=gene-NDY25_12720;Dbxref=NCBI_GP:UUF00879.1;Name=UUF00879.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_12720;product=IS1595 family transposase;protein_id=UUF00879.1;transl_table=11 CP098604.1 Genbank gene 2914392 2914730 . - . ID=gene-NDY25_12725;Name=NDY25_12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12725 CP098604.1 Protein Homology CDS 2914392 2914730 . - 0 ID=cds-UUF00880.1;Parent=gene-NDY25_12725;Dbxref=NCBI_GP:UUF00880.1;Name=UUF00880.1;Ontology_term=GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;inference=COORDINATES: protein motif:HMM:NF014021.2;locus_tag=NDY25_12725;product=nucleotidyltransferase domain-containing protein;protein_id=UUF00880.1;transl_table=11 CP098604.1 Genbank gene 2914847 2915356 . - . ID=gene-NDY25_12730;Name=NDY25_12730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12730 CP098604.1 GeneMarkS-2+ CDS 2914847 2915356 . - 0 ID=cds-UUF00881.1;Parent=gene-NDY25_12730;Dbxref=NCBI_GP:UUF00881.1;Name=UUF00881.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12730;product=hypothetical protein;protein_id=UUF00881.1;transl_table=11 CP098604.1 Genbank gene 2915427 2915681 . - . ID=gene-NDY25_12735;Name=NDY25_12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12735 CP098604.1 GeneMarkS-2+ CDS 2915427 2915681 . - 0 ID=cds-UUF00882.1;Parent=gene-NDY25_12735;Dbxref=NCBI_GP:UUF00882.1;Name=UUF00882.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12735;product=hypothetical protein;protein_id=UUF00882.1;transl_table=11 CP098604.1 Genbank gene 2916012 2916509 . - . ID=gene-NDY25_12740;Name=NDY25_12740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12740 CP098604.1 GeneMarkS-2+ CDS 2916012 2916509 . - 0 ID=cds-UUF00883.1;Parent=gene-NDY25_12740;Dbxref=NCBI_GP:UUF00883.1;Name=UUF00883.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12740;product=hypothetical protein;protein_id=UUF00883.1;transl_table=11 CP098604.1 Genbank gene 2916535 2917497 . - . ID=gene-NDY25_12745;Name=NDY25_12745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12745 CP098604.1 Protein Homology CDS 2916535 2917497 . - 0 ID=cds-UUF00884.1;Parent=gene-NDY25_12745;Dbxref=NCBI_GP:UUF00884.1;Name=UUF00884.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_12745;product=IS1595 family transposase;protein_id=UUF00884.1;transl_table=11 CP098604.1 Genbank gene 2918493 2919152 . - . ID=gene-NDY25_12750;Name=NDY25_12750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12750 CP098604.1 GeneMarkS-2+ CDS 2918493 2919152 . - 0 ID=cds-UUF00885.1;Parent=gene-NDY25_12750;Dbxref=NCBI_GP:UUF00885.1;Name=UUF00885.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12750;product=hypothetical protein;protein_id=UUF00885.1;transl_table=11 CP098604.1 Genbank gene 2919349 2920329 . + . ID=gene-NDY25_12755;Name=NDY25_12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12755 CP098604.1 Protein Homology CDS 2919349 2920329 . + 0 ID=cds-UUF00886.1;Parent=gene-NDY25_12755;Dbxref=NCBI_GP:UUF00886.1;Name=UUF00886.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_12755;product=IS5 family transposase;protein_id=UUF00886.1;transl_table=11 CP098604.1 Genbank gene 2920512 2921491 . + . ID=gene-NDY25_12760;Name=NDY25_12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12760 CP098604.1 Protein Homology CDS 2920512 2921223 . + 0 ID=cds-UUF00887.1;Parent=gene-NDY25_12760;Dbxref=NCBI_GP:UUF00887.1;Name=UUF00887.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_12760;product=IS5 family transposase;protein_id=UUF00887.1;transl_table=11 CP098604.1 Protein Homology CDS 2921223 2921491 . + 2 ID=cds-UUF00887.1;Parent=gene-NDY25_12760;Dbxref=NCBI_GP:UUF00887.1;Name=UUF00887.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_12760;product=IS5 family transposase;protein_id=UUF00887.1;transl_table=11 CP098604.1 Genbank gene 2921581 2922012 . - . ID=gene-NDY25_12765;Name=NDY25_12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12765 CP098604.1 Protein Homology CDS 2921581 2922012 . - 0 ID=cds-UUF00888.1;Parent=gene-NDY25_12765;Dbxref=NCBI_GP:UUF00888.1;Name=UUF00888.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022633.2;locus_tag=NDY25_12765;product=DUF2971 domain-containing protein;protein_id=UUF00888.1;transl_table=11 CP098604.1 Genbank gene 2922143 2923287 . + . ID=gene-NDY25_12770;Name=NDY25_12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12770 CP098604.1 Protein Homology CDS 2922143 2922380 . + 0 ID=cds-UUF00889.1;Parent=gene-NDY25_12770;Dbxref=NCBI_GP:UUF00889.1;Name=UUF00889.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_12770;product=IS3 family transposase;protein_id=UUF00889.1;transl_table=11 CP098604.1 Protein Homology CDS 2922380 2923287 . + 2 ID=cds-UUF00889.1;Parent=gene-NDY25_12770;Dbxref=NCBI_GP:UUF00889.1;Name=UUF00889.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_12770;product=IS3 family transposase;protein_id=UUF00889.1;transl_table=11 CP098604.1 Genbank gene 2923292 2923660 . - . ID=gene-NDY25_12775;Name=NDY25_12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12775 CP098604.1 GeneMarkS-2+ CDS 2923292 2923660 . - 0 ID=cds-UUF00890.1;Parent=gene-NDY25_12775;Dbxref=NCBI_GP:UUF00890.1;Name=UUF00890.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_12775;product=hypothetical protein;protein_id=UUF00890.1;transl_table=11 CP098604.1 Genbank gene 2923732 2924304 . - . ID=gene-NDY25_12780;Name=NDY25_12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12780 CP098604.1 Protein Homology CDS 2923732 2924304 . - 0 ID=cds-UUF00891.1;Parent=gene-NDY25_12780;Dbxref=NCBI_GP:UUF00891.1;Name=UUF00891.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018684.2;locus_tag=NDY25_12780;product=DUF1311 domain-containing protein;protein_id=UUF00891.1;transl_table=11 CP098604.1 Genbank pseudogene 2924535 2924862 . + . ID=gene-NDY25_12785;Name=NDY25_12785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12785;pseudo=true CP098604.1 Protein Homology CDS 2924535 2924862 . + 0 ID=cds-NDY25_12785;Parent=gene-NDY25_12785;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113547.1;locus_tag=NDY25_12785;product=phage integrase N-terminal SAM-like domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2924892 2926730 . - . ID=gene-NDY25_12790;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=NDY25_12790 CP098604.1 Protein Homology CDS 2924892 2926730 . - 0 ID=cds-UUF00892.1;Parent=gene-NDY25_12790;Dbxref=NCBI_GP:UUF00892.1;Name=UUF00892.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437115.1;locus_tag=NDY25_12790;product=dihydroxy-acid dehydratase;protein_id=UUF00892.1;transl_table=11 CP098604.1 Genbank gene 2927025 2927291 . + . ID=gene-NDY25_12795;Name=NDY25_12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12795 CP098604.1 Protein Homology CDS 2927025 2927291 . + 0 ID=cds-UUF00893.1;Parent=gene-NDY25_12795;Dbxref=NCBI_GP:UUF00893.1;Name=UUF00893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409612.1;locus_tag=NDY25_12795;product=YkgJ family cysteine cluster protein;protein_id=UUF00893.1;transl_table=11 CP098604.1 Genbank gene 2927338 2927883 . - . ID=gene-NDY25_12800;Name=NDY25_12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12800 CP098604.1 Protein Homology CDS 2927338 2927883 . - 0 ID=cds-UUF00894.1;Parent=gene-NDY25_12800;Dbxref=NCBI_GP:UUF00894.1;Name=UUF00894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451706.1;locus_tag=NDY25_12800;product=gamma carbonic anhydrase family protein;protein_id=UUF00894.1;transl_table=11 CP098604.1 Genbank gene 2928396 2929706 . + . ID=gene-NDY25_12805;Name=NDY25_12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12805 CP098604.1 Protein Homology CDS 2928396 2929706 . + 0 ID=cds-UUF00895.1;Parent=gene-NDY25_12805;Dbxref=NCBI_GP:UUF00895.1;Name=UUF00895.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010341886.1;locus_tag=NDY25_12805;product=MFS transporter;protein_id=UUF00895.1;transl_table=11 CP098604.1 Genbank gene 2929845 2931089 . + . ID=gene-NDY25_12810;Name=NDY25_12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12810 CP098604.1 Protein Homology CDS 2929845 2931089 . + 0 ID=cds-UUF04641.1;Parent=gene-NDY25_12810;Dbxref=NCBI_GP:UUF04641.1;Name=UUF04641.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172339.1;locus_tag=NDY25_12810;product=HD-GYP domain-containing protein;protein_id=UUF04641.1;transl_table=11 CP098604.1 Genbank gene 2931459 2931935 . + . ID=gene-NDY25_12815;Name=NDY25_12815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12815 CP098604.1 Protein Homology CDS 2931459 2931935 . + 0 ID=cds-UUF00896.1;Parent=gene-NDY25_12815;Dbxref=NCBI_GP:UUF00896.1;Name=UUF00896.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409608.1;locus_tag=NDY25_12815;product=MarR family transcriptional regulator;protein_id=UUF00896.1;transl_table=11 CP098604.1 Genbank gene 2932155 2933093 . + . ID=gene-NDY25_12820;Name=NDY25_12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12820 CP098604.1 Protein Homology CDS 2932155 2933093 . + 0 ID=cds-UUF04642.1;Parent=gene-NDY25_12820;Dbxref=NCBI_GP:UUF04642.1;Name=UUF04642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010343728.1;locus_tag=NDY25_12820;product=transporter;protein_id=UUF04642.1;transl_table=11 CP098604.1 Genbank gene 2933127 2933894 . + . ID=gene-NDY25_12825;Name=NDY25_12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12825 CP098604.1 Protein Homology CDS 2933127 2933894 . + 0 ID=cds-UUF00897.1;Parent=gene-NDY25_12825;Dbxref=NCBI_GP:UUF00897.1;Name=UUF00897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903483.1;locus_tag=NDY25_12825;product=coniferyl-alcohol dehydrogenase;protein_id=UUF00897.1;transl_table=11 CP098604.1 Genbank gene 2933922 2935403 . + . ID=gene-NDY25_12830;Name=NDY25_12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12830 CP098604.1 Protein Homology CDS 2933922 2935403 . + 0 ID=cds-UUF00898.1;Parent=gene-NDY25_12830;Dbxref=NCBI_GP:UUF00898.1;Name=UUF00898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158875.1;locus_tag=NDY25_12830;product=benzaldehyde dehydrogenase;protein_id=UUF00898.1;transl_table=11 CP098604.1 Genbank gene 2936036 2936932 . - . ID=gene-NDY25_12835;Name=NDY25_12835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12835 CP098604.1 Protein Homology CDS 2936036 2936932 . - 0 ID=cds-UUF00899.1;Parent=gene-NDY25_12835;Dbxref=NCBI_GP:UUF00899.1;Name=UUF00899.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485653.1;locus_tag=NDY25_12835;product=helix-turn-helix domain-containing protein;protein_id=UUF00899.1;transl_table=11 CP098604.1 Genbank gene 2937031 2938218 . + . ID=gene-NDY25_12840;Name=pobA;gbkey=Gene;gene=pobA;gene_biotype=protein_coding;locus_tag=NDY25_12840 CP098604.1 Protein Homology CDS 2937031 2938218 . + 0 ID=cds-UUF00900.1;Parent=gene-NDY25_12840;Dbxref=NCBI_GP:UUF00900.1;Name=UUF00900.1;Ontology_term=GO:0018874,GO:0018659;gbkey=CDS;gene=pobA;go_function=4-hydroxybenzoate 3-monooxygenase activity|0018659||IEA;go_process=benzoate metabolic process|0018874||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449585.1;locus_tag=NDY25_12840;product=4-hydroxybenzoate 3-monooxygenase;protein_id=UUF00900.1;transl_table=11 CP098604.1 Genbank gene 2938593 2939105 . + . ID=gene-NDY25_12845;Name=NDY25_12845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12845 CP098604.1 Protein Homology CDS 2938593 2939105 . + 0 ID=cds-UUF00901.1;Parent=gene-NDY25_12845;Dbxref=NCBI_GP:UUF00901.1;Name=UUF00901.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300587.1;locus_tag=NDY25_12845;product=nuclear transport factor 2 family protein;protein_id=UUF00901.1;transl_table=11 CP098604.1 Genbank gene 2939221 2940720 . - . ID=gene-NDY25_12850;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=NDY25_12850 CP098604.1 Protein Homology CDS 2939221 2940720 . - 0 ID=cds-UUF00902.1;Parent=gene-NDY25_12850;Dbxref=NCBI_GP:UUF00902.1;Name=UUF00902.1;Ontology_term=GO:0006071,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368988.1;locus_tag=NDY25_12850;product=glycerol kinase GlpK;protein_id=UUF00902.1;transl_table=11 CP098604.1 Genbank gene 2940855 2941676 . - . ID=gene-NDY25_12855;Name=NDY25_12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12855 CP098604.1 Protein Homology CDS 2940855 2941676 . - 0 ID=cds-UUF00903.1;Parent=gene-NDY25_12855;Dbxref=NCBI_GP:UUF00903.1;Name=UUF00903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449582.1;locus_tag=NDY25_12855;product=aquaporin family protein;protein_id=UUF00903.1;transl_table=11 CP098604.1 Genbank gene 2941873 2943387 . - . ID=gene-NDY25_12860;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=NDY25_12860 CP098604.1 Protein Homology CDS 2941873 2943387 . - 0 ID=cds-UUF00904.1;Parent=gene-NDY25_12860;Dbxref=NCBI_GP:UUF00904.1;Name=UUF00904.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920025.1;locus_tag=NDY25_12860;product=glycerol-3-phosphate dehydrogenase;protein_id=UUF00904.1;transl_table=11 CP098604.1 Genbank gene 2943614 2944441 . - . ID=gene-NDY25_12865;Name=NDY25_12865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12865 CP098604.1 Protein Homology CDS 2943614 2944441 . - 0 ID=cds-UUF00905.1;Parent=gene-NDY25_12865;Dbxref=NCBI_GP:UUF00905.1;Name=UUF00905.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449033.1;locus_tag=NDY25_12865;product=DeoR family transcriptional regulator;protein_id=UUF00905.1;transl_table=11 CP098604.1 Genbank gene 2944453 2944542 . - . ID=gene-NDY25_12870;Name=NDY25_12870;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_12870 CP098604.1 cmsearch ncRNA 2944453 2944542 . - . ID=rna-NDY25_12870;Parent=gene-NDY25_12870;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_12870;product=sX9 sRNA CP098604.1 cmsearch exon 2944453 2944542 . - . ID=exon-NDY25_12870-1;Parent=rna-NDY25_12870;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_12870;product=sX9 sRNA CP098604.1 Genbank gene 2944602 2945585 . - . ID=gene-NDY25_12875;Name=NDY25_12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12875 CP098604.1 Protein Homology CDS 2944602 2945585 . - 0 ID=cds-UUF00906.1;Parent=gene-NDY25_12875;Dbxref=NCBI_GP:UUF00906.1;Name=UUF00906.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158877.1;locus_tag=NDY25_12875;product=PDR/VanB family oxidoreductase;protein_id=UUF00906.1;transl_table=11 CP098604.1 Genbank gene 2945578 2946381 . - . ID=gene-NDY25_12880;Name=NDY25_12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12880 CP098604.1 Protein Homology CDS 2945578 2946381 . - 0 ID=cds-UUF00907.1;Parent=gene-NDY25_12880;Dbxref=NCBI_GP:UUF00907.1;Name=UUF00907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904720.1;locus_tag=NDY25_12880;product=GntR family transcriptional regulator;protein_id=UUF00907.1;transl_table=11 CP098604.1 Genbank gene 2946403 2947479 . - . ID=gene-NDY25_12885;Name=NDY25_12885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12885 CP098604.1 Protein Homology CDS 2946403 2947479 . - 0 ID=cds-UUF00908.1;Parent=gene-NDY25_12885;Dbxref=NCBI_GP:UUF00908.1;Name=UUF00908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302967.1;locus_tag=NDY25_12885;product=aromatic ring-hydroxylating dioxygenase subunit alpha;protein_id=UUF00908.1;transl_table=11 CP098604.1 Genbank gene 2947736 2948599 . + . ID=gene-NDY25_12890;Name=NDY25_12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12890 CP098604.1 Protein Homology CDS 2947736 2948599 . + 0 ID=cds-UUF00909.1;Parent=gene-NDY25_12890;Dbxref=NCBI_GP:UUF00909.1;Name=UUF00909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089107.1;locus_tag=NDY25_12890;product=CoA transferase subunit A;protein_id=UUF00909.1;transl_table=11 CP098604.1 Genbank gene 2948596 2949384 . + . ID=gene-NDY25_12895;Name=NDY25_12895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12895 CP098604.1 Protein Homology CDS 2948596 2949384 . + 0 ID=cds-UUF00910.1;Parent=gene-NDY25_12895;Dbxref=NCBI_GP:UUF00910.1;Name=UUF00910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089108.1;locus_tag=NDY25_12895;product=CoA-transferase subunit beta;protein_id=UUF00910.1;transl_table=11 CP098604.1 Genbank gene 2949381 2950589 . + . ID=gene-NDY25_12900;Name=pcaF;gbkey=Gene;gene=pcaF;gene_biotype=protein_coding;locus_tag=NDY25_12900 CP098604.1 Protein Homology CDS 2949381 2950589 . + 0 ID=cds-UUF00911.1;Parent=gene-NDY25_12900;Dbxref=NCBI_GP:UUF00911.1;Name=UUF00911.1;Ontology_term=GO:0019619,GO:0016747;gbkey=CDS;gene=pcaF;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=3%2C4-dihydroxybenzoate catabolic process|0019619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577959.1;locus_tag=NDY25_12900;product=3-oxoadipyl-CoA thiolase;protein_id=UUF00911.1;transl_table=11 CP098604.1 Genbank gene 2950704 2951432 . + . ID=gene-NDY25_12905;Name=pcaH;gbkey=Gene;gene=pcaH;gene_biotype=protein_coding;locus_tag=NDY25_12905 CP098604.1 Protein Homology CDS 2950704 2951432 . + 0 ID=cds-UUF00912.1;Parent=gene-NDY25_12905;Dbxref=NCBI_GP:UUF00912.1;Name=UUF00912.1;Ontology_term=GO:0046278,GO:0018578;gbkey=CDS;gene=pcaH;go_function=protocatechuate 3%2C4-dioxygenase activity|0018578||IEA;go_process=3%2C4-dihydroxybenzoate metabolic process|0046278||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118364.1;locus_tag=NDY25_12905;product=protocatechuate 3%2C4-dioxygenase subunit beta;protein_id=UUF00912.1;transl_table=11 CP098604.1 Genbank gene 2951437 2952000 . + . ID=gene-NDY25_12910;Name=pcaG;gbkey=Gene;gene=pcaG;gene_biotype=protein_coding;locus_tag=NDY25_12910 CP098604.1 Protein Homology CDS 2951437 2952000 . + 0 ID=cds-UUF00913.1;Parent=gene-NDY25_12910;Dbxref=NCBI_GP:UUF00913.1;Name=UUF00913.1;Ontology_term=GO:0046278,GO:0018578;gbkey=CDS;gene=pcaG;go_function=protocatechuate 3%2C4-dioxygenase activity|0018578||IEA;go_process=3%2C4-dihydroxybenzoate metabolic process|0046278||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912759.1;locus_tag=NDY25_12910;product=protocatechuate 3%2C4-dioxygenase subunit alpha;protein_id=UUF00913.1;transl_table=11 CP098604.1 Genbank pseudogene 2952088 2953464 . + . ID=gene-NDY25_12915;Name=NDY25_12915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_12915;pseudo=true CP098604.1 Protein Homology CDS 2952088 2953464 . + 0 ID=cds-NDY25_12915;Parent=gene-NDY25_12915;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0019619,GO:0047472;gbkey=CDS;go_function=3-carboxy-cis%2Ccis-muconate cycloisomerase activity|0047472||IEA;go_process=3%2C4-dihydroxybenzoate catabolic process|0019619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156473.1;locus_tag=NDY25_12915;product=3-carboxy-cis%2Ccis-muconate cycloisomerase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2953482 2954264 . + . ID=gene-NDY25_12920;Name=pcaD;gbkey=Gene;gene=pcaD;gene_biotype=protein_coding;locus_tag=NDY25_12920 CP098604.1 Protein Homology CDS 2953482 2954264 . + 0 ID=cds-UUF00914.1;Parent=gene-NDY25_12920;Dbxref=NCBI_GP:UUF00914.1;Name=UUF00914.1;Ontology_term=GO:0042952,GO:0047570;gbkey=CDS;gene=pcaD;go_function=3-oxoadipate enol-lactonase activity|0047570||IEA;go_process=beta-ketoadipate pathway|0042952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118367.1;locus_tag=NDY25_12920;product=3-oxoadipate enol-lactonase;protein_id=UUF00914.1;transl_table=11 CP098604.1 Genbank gene 2954329 2954715 . + . ID=gene-NDY25_12925;Name=pcaC;gbkey=Gene;gene=pcaC;gene_biotype=protein_coding;locus_tag=NDY25_12925 CP098604.1 Protein Homology CDS 2954329 2954715 . + 0 ID=cds-UUF00915.1;Parent=gene-NDY25_12925;Dbxref=NCBI_GP:UUF00915.1;Name=UUF00915.1;Ontology_term=GO:0047575;gbkey=CDS;gene=pcaC;go_function=4-carboxymuconolactone decarboxylase activity|0047575||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346075.1;locus_tag=NDY25_12925;product=4-carboxymuconolactone decarboxylase;protein_id=UUF00915.1;transl_table=11 CP098604.1 Genbank gene 2954973 2955899 . + . ID=gene-NDY25_12930;Name=NDY25_12930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12930 CP098604.1 Protein Homology CDS 2954973 2955899 . + 0 ID=cds-UUF00916.1;Parent=gene-NDY25_12930;Dbxref=NCBI_GP:UUF00916.1;Name=UUF00916.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462787.1;locus_tag=NDY25_12930;product=lysophospholipase;protein_id=UUF00916.1;transl_table=11 CP098604.1 Genbank gene 2955916 2956776 . - . ID=gene-NDY25_12935;Name=NDY25_12935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12935 CP098604.1 Protein Homology CDS 2955916 2956776 . - 0 ID=cds-UUF00917.1;Parent=gene-NDY25_12935;Dbxref=NCBI_GP:UUF00917.1;Name=UUF00917.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368966.1;locus_tag=NDY25_12935;product=helix-turn-helix domain-containing protein;protein_id=UUF00917.1;transl_table=11 CP098604.1 Genbank gene 2956924 2957784 . + . ID=gene-NDY25_12940;Name=NDY25_12940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12940 CP098604.1 Protein Homology CDS 2956924 2957784 . + 0 ID=cds-UUF00918.1;Parent=gene-NDY25_12940;Dbxref=NCBI_GP:UUF00918.1;Name=UUF00918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968468.1;locus_tag=NDY25_12940;product=serine protein kinase RIO;protein_id=UUF00918.1;transl_table=11 CP098604.1 Genbank gene 2958128 2958871 . + . ID=gene-NDY25_12945;Name=NDY25_12945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12945 CP098604.1 Protein Homology CDS 2958128 2958871 . + 0 ID=cds-UUF00919.1;Parent=gene-NDY25_12945;Dbxref=NCBI_GP:UUF00919.1;Name=UUF00919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451962.1;locus_tag=NDY25_12945;product=alpha/beta hydrolase;protein_id=UUF00919.1;transl_table=11 CP098604.1 Genbank gene 2958868 2959578 . - . ID=gene-NDY25_12950;Name=NDY25_12950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12950 CP098604.1 Protein Homology CDS 2958868 2959578 . - 0 ID=cds-UUF00920.1;Parent=gene-NDY25_12950;Dbxref=NCBI_GP:UUF00920.1;Name=UUF00920.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912749.1;locus_tag=NDY25_12950;product=DUF2490 domain-containing protein;protein_id=UUF00920.1;transl_table=11 CP098604.1 Genbank gene 2960021 2961925 . - . ID=gene-NDY25_12955;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=NDY25_12955 CP098604.1 Protein Homology CDS 2960021 2961925 . - 0 ID=cds-UUF00921.1;Parent=gene-NDY25_12955;Dbxref=NCBI_GP:UUF00921.1;Name=UUF00921.1;Ontology_term=GO:0002098,GO:0008033,GO:0050660;gbkey=CDS;gene=mnmG;go_function=flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437137.1;locus_tag=NDY25_12955;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=UUF00921.1;transl_table=11 CP098604.1 Genbank gene 2962507 2962989 . - . ID=gene-NDY25_12960;Name=NDY25_12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12960 CP098604.1 Protein Homology CDS 2962507 2962989 . - 0 ID=cds-UUF00922.1;Parent=gene-NDY25_12960;Dbxref=NCBI_GP:UUF00922.1;Name=UUF00922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171656.1;locus_tag=NDY25_12960;product=hypothetical protein;protein_id=UUF00922.1;transl_table=11 CP098604.1 Genbank gene 2963146 2964105 . + . ID=gene-NDY25_12965;Name=NDY25_12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12965 CP098604.1 Protein Homology CDS 2963146 2964105 . + 0 ID=cds-UUF00923.1;Parent=gene-NDY25_12965;Dbxref=NCBI_GP:UUF00923.1;Name=UUF00923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920032.1;locus_tag=NDY25_12965;product=pyridoxal-phosphate dependent enzyme;protein_id=UUF00923.1;transl_table=11 CP098604.1 Genbank gene 2964090 2964707 . + . ID=gene-NDY25_12970;Name=NDY25_12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12970 CP098604.1 Protein Homology CDS 2964090 2964707 . + 0 ID=cds-UUF00924.1;Parent=gene-NDY25_12970;Dbxref=NCBI_GP:UUF00924.1;Name=UUF00924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451966.1;locus_tag=NDY25_12970;product=YdcF family protein;protein_id=UUF00924.1;transl_table=11 CP098604.1 Genbank gene 2964787 2965206 . + . ID=gene-NDY25_12975;Name=NDY25_12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12975 CP098604.1 Protein Homology CDS 2964787 2965206 . + 0 ID=cds-UUF00925.1;Parent=gene-NDY25_12975;Dbxref=NCBI_GP:UUF00925.1;Name=UUF00925.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903249.1;locus_tag=NDY25_12975;product=nuclear transport factor 2 family protein;protein_id=UUF00925.1;transl_table=11 CP098604.1 Genbank gene 2965425 2966330 . - . ID=gene-NDY25_12980;Name=lpxO;gbkey=Gene;gene=lpxO;gene_biotype=protein_coding;locus_tag=NDY25_12980 CP098604.1 Protein Homology CDS 2965425 2966330 . - 0 ID=cds-UUF00926.1;Parent=gene-NDY25_12980;Dbxref=NCBI_GP:UUF00926.1;Name=UUF00926.1;Ontology_term=GO:0018193;gbkey=CDS;gene=lpxO;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012443706.1;locus_tag=NDY25_12980;product=lipid A hydroxylase LpxO;protein_id=UUF00926.1;transl_table=11 CP098604.1 Genbank gene 2966426 2966503 . + . ID=gene-NDY25_12985;Name=NDY25_12985;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_12985 CP098604.1 cmsearch ncRNA 2966426 2966503 . + . ID=rna-NDY25_12985;Parent=gene-NDY25_12985;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_12985;product=sX9 sRNA CP098604.1 cmsearch exon 2966426 2966503 . + . ID=exon-NDY25_12985-1;Parent=rna-NDY25_12985;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_12985;product=sX9 sRNA CP098604.1 Genbank gene 2966675 2967559 . - . ID=gene-NDY25_12990;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=NDY25_12990 CP098604.1 Protein Homology CDS 2966675 2967559 . - 0 ID=cds-UUF00927.1;Parent=gene-NDY25_12990;Dbxref=NCBI_GP:UUF00927.1;Name=UUF00927.1;Ontology_term=GO:0009102,GO:0008171;gbkey=CDS;gene=bioC;go_function=O-methyltransferase activity|0008171||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485708.1;locus_tag=NDY25_12990;product=malonyl-ACP O-methyltransferase BioC;protein_id=UUF00927.1;transl_table=11 CP098604.1 Genbank gene 2967773 2968555 . - . ID=gene-NDY25_12995;Name=NDY25_12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_12995 CP098604.1 Protein Homology CDS 2967773 2968555 . - 0 ID=cds-UUF00928.1;Parent=gene-NDY25_12995;Dbxref=NCBI_GP:UUF00928.1;Name=UUF00928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509285.1;locus_tag=NDY25_12995;product=SDR family oxidoreductase;protein_id=UUF00928.1;transl_table=11 CP098604.1 Genbank gene 2968600 2969361 . - . ID=gene-NDY25_13000;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=NDY25_13000 CP098604.1 Protein Homology CDS 2968600 2969361 . - 0 ID=cds-UUF00929.1;Parent=gene-NDY25_13000;Dbxref=NCBI_GP:UUF00929.1;Name=UUF00929.1;Ontology_term=GO:0009102,GO:0003824;gbkey=CDS;gene=bioH;go_function=catalytic activity|0003824||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968482.1;locus_tag=NDY25_13000;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=UUF00929.1;transl_table=11 CP098604.1 Genbank gene 2969654 2970859 . - . ID=gene-NDY25_13005;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=NDY25_13005 CP098604.1 Protein Homology CDS 2969654 2970859 . - 0 ID=cds-UUF00930.1;Parent=gene-NDY25_13005;Dbxref=NCBI_GP:UUF00930.1;Name=UUF00930.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903255.1;locus_tag=NDY25_13005;product=8-amino-7-oxononanoate synthase;protein_id=UUF00930.1;transl_table=11 CP098604.1 Genbank gene 2970958 2971992 . - . ID=gene-NDY25_13010;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=NDY25_13010 CP098604.1 Protein Homology CDS 2970958 2971992 . - 0 ID=cds-UUF00931.1;Parent=gene-NDY25_13010;Dbxref=NCBI_GP:UUF00931.1;Name=UUF00931.1;Ontology_term=GO:0009102,GO:0004076,GO:0051537,GO:0051539,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368929.1;locus_tag=NDY25_13010;product=biotin synthase BioB;protein_id=UUF00931.1;transl_table=11 CP098604.1 Genbank gene 2972042 2972767 . + . ID=gene-NDY25_13015;Name=NDY25_13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13015 CP098604.1 Protein Homology CDS 2972042 2972767 . + 0 ID=cds-UUF00932.1;Parent=gene-NDY25_13015;Dbxref=NCBI_GP:UUF00932.1;Name=UUF00932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115760.1;locus_tag=NDY25_13015;product=ComF family protein;protein_id=UUF00932.1;transl_table=11 CP098604.1 Genbank gene 2973159 2974064 . - . ID=gene-NDY25_13020;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=NDY25_13020 CP098604.1 Protein Homology CDS 2973159 2974064 . - 0 ID=cds-UUF00933.1;Parent=gene-NDY25_13020;Dbxref=NCBI_GP:UUF00933.1;Name=UUF00933.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate octaprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050286.1;locus_tag=NDY25_13020;product=4-hydroxybenzoate octaprenyltransferase;protein_id=UUF00933.1;transl_table=11 CP098604.1 Genbank gene 2974292 2974368 . + . ID=gene-NDY25_13025;Name=NDY25_13025;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_13025 CP098604.1 tRNAscan-SE tRNA 2974292 2974368 . + . ID=rna-NDY25_13025;Parent=gene-NDY25_13025;anticodon=(pos:2974326..2974328);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_13025;product=tRNA-Arg CP098604.1 tRNAscan-SE exon 2974292 2974368 . + . ID=exon-NDY25_13025-1;Parent=rna-NDY25_13025;anticodon=(pos:2974326..2974328);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_13025;product=tRNA-Arg CP098604.1 Genbank pseudogene 2974604 2974732 . + . ID=gene-NDY25_13030;Name=NDY25_13030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13030;pseudo=true CP098604.1 Protein Homology CDS 2974604 2974732 . + 0 ID=cds-NDY25_13030;Parent=gene-NDY25_13030;Note=incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005991142.1;locus_tag=NDY25_13030;product=DNA repair protein RadC;pseudo=true;transl_table=11 CP098604.1 Genbank gene 2974916 2975599 . + . ID=gene-NDY25_13035;Name=NDY25_13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13035 CP098604.1 Protein Homology CDS 2974916 2975599 . + 0 ID=cds-UUF04643.1;Parent=gene-NDY25_13035;Dbxref=NCBI_GP:UUF04643.1;Name=UUF04643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451223.1;locus_tag=NDY25_13035;product=thermonuclease family protein;protein_id=UUF04643.1;transl_table=11 CP098604.1 Genbank gene 2975812 2976153 . - . ID=gene-NDY25_13040;Name=NDY25_13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13040 CP098604.1 Protein Homology CDS 2975812 2976153 . - 0 ID=cds-UUF00934.1;Parent=gene-NDY25_13040;Dbxref=NCBI_GP:UUF00934.1;Name=UUF00934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974834.1;locus_tag=NDY25_13040;product=HPF/RaiA family ribosome-associated protein;protein_id=UUF00934.1;transl_table=11 CP098604.1 Genbank gene 2976508 2978931 . + . ID=gene-NDY25_13045;Name=NDY25_13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13045 CP098604.1 Protein Homology CDS 2976508 2978931 . + 0 ID=cds-UUF04644.1;Parent=gene-NDY25_13045;Dbxref=NCBI_GP:UUF04644.1;Name=UUF04644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112899.1;locus_tag=NDY25_13045;product=DUF3772 domain-containing protein;protein_id=UUF04644.1;transl_table=11 CP098604.1 Genbank gene 2979575 2979652 . - . ID=gene-NDY25_13050;Name=NDY25_13050;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_13050 CP098604.1 cmsearch ncRNA 2979575 2979652 . - . ID=rna-NDY25_13050;Parent=gene-NDY25_13050;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_13050;product=sX9 sRNA CP098604.1 cmsearch exon 2979575 2979652 . - . ID=exon-NDY25_13050-1;Parent=rna-NDY25_13050;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_13050;product=sX9 sRNA CP098604.1 Genbank gene 2979731 2981839 . - . ID=gene-NDY25_13055;Name=NDY25_13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13055 CP098604.1 Protein Homology CDS 2979731 2981839 . - 0 ID=cds-UUF00935.1;Parent=gene-NDY25_13055;Dbxref=NCBI_GP:UUF00935.1;Name=UUF00935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171651.1;locus_tag=NDY25_13055;product=phosphoglycerol transferase I;protein_id=UUF00935.1;transl_table=11 CP098604.1 Genbank gene 2982213 2983937 . - . ID=gene-NDY25_13060;Name=NDY25_13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13060 CP098604.1 Protein Homology CDS 2982213 2983937 . - 0 ID=cds-UUF00936.1;Parent=gene-NDY25_13060;Dbxref=NCBI_GP:UUF00936.1;Name=UUF00936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301292.1;locus_tag=NDY25_13060;product=AarF/UbiB family protein;protein_id=UUF00936.1;transl_table=11 CP098604.1 Genbank gene 2984067 2985008 . + . ID=gene-NDY25_13065;Name=NDY25_13065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13065 CP098604.1 Protein Homology CDS 2984067 2985008 . + 0 ID=cds-UUF00937.1;Parent=gene-NDY25_13065;Dbxref=NCBI_GP:UUF00937.1;Name=UUF00937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005928381.1;locus_tag=NDY25_13065;product=DUF808 domain-containing protein;protein_id=UUF00937.1;transl_table=11 CP098604.1 Genbank gene 2985435 2986739 . + . ID=gene-NDY25_13070;Name=NDY25_13070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13070 CP098604.1 Protein Homology CDS 2985435 2986739 . + 0 ID=cds-UUF04645.1;Parent=gene-NDY25_13070;Dbxref=NCBI_GP:UUF04645.1;Name=UUF04645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449761.1;locus_tag=NDY25_13070;product=family 10 glycosylhydrolase;protein_id=UUF04645.1;transl_table=11 CP098604.1 Genbank gene 2986851 2988470 . - . ID=gene-NDY25_13075;Name=NDY25_13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13075 CP098604.1 Protein Homology CDS 2986851 2988470 . - 0 ID=cds-UUF00938.1;Parent=gene-NDY25_13075;Dbxref=NCBI_GP:UUF00938.1;Name=UUF00938.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089156.1;locus_tag=NDY25_13075;product=diguanylate cyclase;protein_id=UUF00938.1;transl_table=11 CP098604.1 Genbank gene 2988957 2990540 . + . ID=gene-NDY25_13080;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=NDY25_13080 CP098604.1 Protein Homology CDS 2988957 2990540 . + 0 ID=cds-UUF00939.1;Parent=gene-NDY25_13080;Dbxref=NCBI_GP:UUF00939.1;Name=UUF00939.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=glycogen (starch) synthase activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575489.1;locus_tag=NDY25_13080;product=glycogen synthase GlgA;protein_id=UUF00939.1;transl_table=11 CP098604.1 Genbank gene 2990537 2992768 . + . ID=gene-NDY25_13085;Name=NDY25_13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13085 CP098604.1 Protein Homology CDS 2990537 2992768 . + 0 ID=cds-UUF00940.1;Parent=gene-NDY25_13085;Dbxref=NCBI_GP:UUF00940.1;Name=UUF00940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161584.1;locus_tag=NDY25_13085;product=1%2C4-alpha-glucan branching enzyme;protein_id=UUF00940.1;transl_table=11 CP098604.1 Genbank gene 2992771 2994528 . + . ID=gene-NDY25_13090;Name=treZ;gbkey=Gene;gene=treZ;gene_biotype=protein_coding;locus_tag=NDY25_13090 CP098604.1 Protein Homology CDS 2992771 2994528 . + 0 ID=cds-UUF00941.1;Parent=gene-NDY25_13090;Dbxref=NCBI_GP:UUF00941.1;Name=UUF00941.1;Ontology_term=GO:0005992,GO:0016798;gbkey=CDS;gene=treZ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156528.1;locus_tag=NDY25_13090;product=malto-oligosyltrehalose trehalohydrolase;protein_id=UUF00941.1;transl_table=11 CP098604.1 Genbank gene 2994525 2996474 . + . ID=gene-NDY25_13095;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=NDY25_13095 CP098604.1 Protein Homology CDS 2994525 2996474 . + 0 ID=cds-UUF00942.1;Parent=gene-NDY25_13095;Dbxref=NCBI_GP:UUF00942.1;Name=UUF00942.1;Ontology_term=GO:0005980,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449756.1;locus_tag=NDY25_13095;product=4-alpha-glucanotransferase;protein_id=UUF00942.1;transl_table=11 CP098604.1 Genbank gene 2996471 2999074 . + . ID=gene-NDY25_13100;Name=treY;gbkey=Gene;gene=treY;gene_biotype=protein_coding;locus_tag=NDY25_13100 CP098604.1 Protein Homology CDS 2996471 2999074 . + 0 ID=cds-UUF00943.1;Parent=gene-NDY25_13100;Dbxref=NCBI_GP:UUF00943.1;Name=UUF00943.1;Ontology_term=GO:0005992,GO:0047470;gbkey=CDS;gene=treY;go_function=(1%2C4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity|0047470||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449755.1;locus_tag=NDY25_13100;product=malto-oligosyltrehalose synthase;protein_id=UUF00943.1;transl_table=11 CP098604.1 Genbank gene 2999088 2999261 . + . ID=gene-NDY25_13105;Name=NDY25_13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13105 CP098604.1 Protein Homology CDS 2999088 2999261 . + 0 ID=cds-UUF00944.1;Parent=gene-NDY25_13105;Dbxref=NCBI_GP:UUF00944.1;Name=UUF00944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449754.1;locus_tag=NDY25_13105;product=DUF2934 domain-containing protein;protein_id=UUF00944.1;transl_table=11 CP098604.1 Genbank gene 2999383 3001545 . + . ID=gene-NDY25_13110;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=NDY25_13110 CP098604.1 Protein Homology CDS 2999383 3001545 . + 0 ID=cds-UUF00945.1;Parent=gene-NDY25_13110;Dbxref=NCBI_GP:UUF00945.1;Name=UUF00945.1;Ontology_term=GO:0005980,GO:0004133;gbkey=CDS;gene=glgX;go_function=glycogen debranching enzyme activity|0004133||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382022.1;locus_tag=NDY25_13110;product=glycogen debranching protein GlgX;protein_id=UUF00945.1;transl_table=11 CP098604.1 Genbank gene 3001562 3002194 . + . ID=gene-NDY25_13115;Name=NDY25_13115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13115 CP098604.1 Protein Homology CDS 3001562 3002194 . + 0 ID=cds-UUF00946.1;Parent=gene-NDY25_13115;Dbxref=NCBI_GP:UUF00946.1;Name=UUF00946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301281.1;locus_tag=NDY25_13115;product=NAD(P)H-binding protein;protein_id=UUF00946.1;transl_table=11 CP098604.1 Genbank gene 3002578 3002907 . + . ID=gene-NDY25_13120;Name=NDY25_13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13120 CP098604.1 GeneMarkS-2+ CDS 3002578 3002907 . + 0 ID=cds-UUF00947.1;Parent=gene-NDY25_13120;Dbxref=NCBI_GP:UUF00947.1;Name=UUF00947.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13120;product=hypothetical protein;protein_id=UUF00947.1;transl_table=11 CP098604.1 Genbank gene 3003061 3003136 . - . ID=gene-NDY25_13125;Name=NDY25_13125;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_13125 CP098604.1 cmsearch ncRNA 3003061 3003136 . - . ID=rna-NDY25_13125;Parent=gene-NDY25_13125;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_13125;product=sX9 sRNA CP098604.1 cmsearch exon 3003061 3003136 . - . ID=exon-NDY25_13125-1;Parent=rna-NDY25_13125;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_13125;product=sX9 sRNA CP098604.1 Genbank gene 3003192 3003971 . - . ID=gene-NDY25_13130;Name=NDY25_13130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13130 CP098604.1 Protein Homology CDS 3003192 3003971 . - 0 ID=cds-UUF00948.1;Parent=gene-NDY25_13130;Dbxref=NCBI_GP:UUF00948.1;Name=UUF00948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901660.1;locus_tag=NDY25_13130;product=SDR family oxidoreductase;protein_id=UUF00948.1;transl_table=11 CP098604.1 Genbank gene 3004315 3005724 . + . ID=gene-NDY25_13135;Name=NDY25_13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13135 CP098604.1 Protein Homology CDS 3004315 3005724 . + 0 ID=cds-UUF00949.1;Parent=gene-NDY25_13135;Dbxref=NCBI_GP:UUF00949.1;Name=UUF00949.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901659.1;locus_tag=NDY25_13135;product=FAD/NAD(P)-binding protein;protein_id=UUF00949.1;transl_table=11 CP098604.1 Genbank gene 3006248 3006679 . + . ID=gene-NDY25_13140;Name=NDY25_13140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13140 CP098604.1 Protein Homology CDS 3006248 3006679 . + 0 ID=cds-UUF00950.1;Parent=gene-NDY25_13140;Dbxref=NCBI_GP:UUF00950.1;Name=UUF00950.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156537.1;locus_tag=NDY25_13140;product=VirK family protein;protein_id=UUF00950.1;transl_table=11 CP098604.1 Genbank gene 3006712 3007149 . + . ID=gene-NDY25_13145;Name=NDY25_13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13145 CP098604.1 Protein Homology CDS 3006712 3007149 . + 0 ID=cds-UUF00951.1;Parent=gene-NDY25_13145;Dbxref=NCBI_GP:UUF00951.1;Name=UUF00951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993036.1;locus_tag=NDY25_13145;product=VirK family protein;protein_id=UUF00951.1;transl_table=11 CP098604.1 Genbank gene 3007235 3008695 . - . ID=gene-NDY25_13150;Name=NDY25_13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13150 CP098604.1 Protein Homology CDS 3007235 3008695 . - 0 ID=cds-UUF00952.1;Parent=gene-NDY25_13150;Dbxref=NCBI_GP:UUF00952.1;Name=UUF00952.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448756.1;locus_tag=NDY25_13150;product=efflux transporter outer membrane subunit;protein_id=UUF00952.1;transl_table=11 CP098604.1 Genbank gene 3008786 3009403 . + . ID=gene-NDY25_13155;Name=NDY25_13155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13155 CP098604.1 Protein Homology CDS 3008786 3009403 . + 0 ID=cds-UUF00953.1;Parent=gene-NDY25_13155;Dbxref=NCBI_GP:UUF00953.1;Name=UUF00953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156539.1;locus_tag=NDY25_13155;product=TetR/AcrR family transcriptional regulator;protein_id=UUF00953.1;transl_table=11 CP098604.1 Genbank gene 3009481 3010629 . + . ID=gene-NDY25_13160;Name=NDY25_13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13160 CP098604.1 Protein Homology CDS 3009481 3010629 . + 0 ID=cds-UUF00954.1;Parent=gene-NDY25_13160;Dbxref=NCBI_GP:UUF00954.1;Name=UUF00954.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448754.1;locus_tag=NDY25_13160;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF00954.1;transl_table=11 CP098604.1 Genbank gene 3010626 3013715 . + . ID=gene-NDY25_13165;Name=NDY25_13165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13165 CP098604.1 Protein Homology CDS 3010626 3013715 . + 0 ID=cds-UUF00955.1;Parent=gene-NDY25_13165;Dbxref=NCBI_GP:UUF00955.1;Name=UUF00955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448753.1;locus_tag=NDY25_13165;product=efflux RND transporter permease subunit;protein_id=UUF00955.1;transl_table=11 CP098604.1 Genbank gene 3013991 3014323 . + . ID=gene-NDY25_13170;Name=NDY25_13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13170 CP098604.1 Protein Homology CDS 3013991 3014323 . + 0 ID=cds-UUF00956.1;Parent=gene-NDY25_13170;Dbxref=NCBI_GP:UUF00956.1;Name=UUF00956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301442.1;locus_tag=NDY25_13170;product=DUF6172 family protein;protein_id=UUF00956.1;transl_table=11 CP098604.1 Genbank gene 3014643 3015932 . - . ID=gene-NDY25_13175;Name=NDY25_13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13175 CP098604.1 Protein Homology CDS 3014643 3015932 . - 0 ID=cds-UUF00957.1;Parent=gene-NDY25_13175;Dbxref=NCBI_GP:UUF00957.1;Name=UUF00957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804610.1;locus_tag=NDY25_13175;product=DEAD/DEAH box helicase;protein_id=UUF00957.1;transl_table=11 CP098604.1 Genbank gene 3016182 3017066 . + . ID=gene-NDY25_13180;Name=NDY25_13180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13180 CP098604.1 GeneMarkS-2+ CDS 3016182 3017066 . + 0 ID=cds-UUF00958.1;Parent=gene-NDY25_13180;Dbxref=NCBI_GP:UUF00958.1;Name=UUF00958.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13180;product=hypothetical protein;protein_id=UUF00958.1;transl_table=11 CP098604.1 Genbank gene 3017274 3018728 . - . ID=gene-NDY25_13185;Name=NDY25_13185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13185 CP098604.1 Protein Homology CDS 3017274 3018728 . - 0 ID=cds-UUF00959.1;Parent=gene-NDY25_13185;Dbxref=NCBI_GP:UUF00959.1;Name=UUF00959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050323.1;locus_tag=NDY25_13185;product=2-oxo acid dehydrogenase subunit E2;protein_id=UUF00959.1;transl_table=11 CP098604.1 Genbank gene 3018725 3019108 . - . ID=gene-NDY25_13190;Name=NDY25_13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13190 CP098604.1 Protein Homology CDS 3018725 3019108 . - 0 ID=cds-UUF00960.1;Parent=gene-NDY25_13190;Dbxref=NCBI_GP:UUF00960.1;Name=UUF00960.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156545.1;locus_tag=NDY25_13190;product=SH3 domain-containing protein;protein_id=UUF00960.1;transl_table=11 CP098604.1 Genbank gene 3019110 3020180 . - . ID=gene-NDY25_13195;Name=NDY25_13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13195 CP098604.1 Protein Homology CDS 3019110 3020180 . - 0 ID=cds-UUF00961.1;Parent=gene-NDY25_13195;Dbxref=NCBI_GP:UUF00961.1;Name=UUF00961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161957.1;locus_tag=NDY25_13195;product=alpha-ketoacid dehydrogenase subunit beta;protein_id=UUF00961.1;transl_table=11 CP098604.1 Genbank gene 3020173 3021261 . - . ID=gene-NDY25_13200;Name=pdhA;gbkey=Gene;gene=pdhA;gene_biotype=protein_coding;locus_tag=NDY25_13200 CP098604.1 Protein Homology CDS 3020173 3021261 . - 0 ID=cds-UUF00962.1;Parent=gene-NDY25_13200;Dbxref=NCBI_GP:UUF00962.1;Name=UUF00962.1;Ontology_term=GO:0006086,GO:0004739,GO:0045250;gbkey=CDS;gene=pdhA;go_component=cytosolic pyruvate dehydrogenase complex|0045250||IEA;go_function=pyruvate dehydrogenase (acetyl-transferring) activity|0004739||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850583.1;locus_tag=NDY25_13200;product=pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha;protein_id=UUF00962.1;transl_table=11 CP098604.1 Genbank gene 3021438 3025019 . - . ID=gene-NDY25_13205;Name=NDY25_13205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13205 CP098604.1 Protein Homology CDS 3021438 3025019 . - 0 ID=cds-UUF00963.1;Parent=gene-NDY25_13205;Dbxref=NCBI_GP:UUF00963.1;Name=UUF00963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575533.1;locus_tag=NDY25_13205;product=lamin tail domain-containing protein;protein_id=UUF00963.1;transl_table=11 CP098604.1 Genbank gene 3025376 3026272 . + . ID=gene-NDY25_13210;Name=NDY25_13210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13210 CP098604.1 Protein Homology CDS 3025376 3026272 . + 0 ID=cds-UUF00964.1;Parent=gene-NDY25_13210;Dbxref=NCBI_GP:UUF00964.1;Name=UUF00964.1;Ontology_term=GO:0019441,GO:0004833,GO:0020037;gbkey=CDS;go_function=tryptophan 2%2C3-dioxygenase activity|0004833||IEA,heme binding|0020037||IEA;go_process=tryptophan catabolic process to kynurenine|0019441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035685.1;locus_tag=NDY25_13210;product=tryptophan 2%2C3-dioxygenase family protein;protein_id=UUF00964.1;transl_table=11 CP098604.1 Genbank gene 3026887 3028305 . + . ID=gene-NDY25_13215;Name=NDY25_13215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13215 CP098604.1 Protein Homology CDS 3026887 3028305 . + 0 ID=cds-UUF00965.1;Parent=gene-NDY25_13215;Dbxref=NCBI_GP:UUF00965.1;Name=UUF00965.1;Ontology_term=GO:0015833,GO:0015333,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=peptide:proton symporter activity|0015333||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448742.1;locus_tag=NDY25_13215;product=oligopeptide:H+ symporter;protein_id=UUF00965.1;transl_table=11 CP098604.1 Genbank gene 3028317 3028922 . + . ID=gene-NDY25_13220;Name=NDY25_13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13220 CP098604.1 Protein Homology CDS 3028317 3028922 . + 0 ID=cds-UUF00966.1;Parent=gene-NDY25_13220;Dbxref=NCBI_GP:UUF00966.1;Name=UUF00966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931590.1;locus_tag=NDY25_13220;product=thioredoxin family protein;protein_id=UUF00966.1;transl_table=11 CP098604.1 Genbank gene 3029155 3029643 . - . ID=gene-NDY25_13225;Name=NDY25_13225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13225 CP098604.1 Protein Homology CDS 3029155 3029643 . - 0 ID=cds-UUF00967.1;Parent=gene-NDY25_13225;Dbxref=NCBI_GP:UUF00967.1;Name=UUF00967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035688.1;locus_tag=NDY25_13225;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=UUF00967.1;transl_table=11 CP098604.1 Genbank gene 3029766 3030881 . + . ID=gene-NDY25_13230;Name=hppD;gbkey=Gene;gene=hppD;gene_biotype=protein_coding;locus_tag=NDY25_13230 CP098604.1 Protein Homology CDS 3029766 3030881 . + 0 ID=cds-UUF00968.1;Parent=gene-NDY25_13230;Dbxref=NCBI_GP:UUF00968.1;Name=UUF00968.1;Ontology_term=GO:0006559,GO:0006572,GO:0003868;gbkey=CDS;gene=hppD;go_function=4-hydroxyphenylpyruvate dioxygenase activity|0003868||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112910.1;locus_tag=NDY25_13230;product=4-hydroxyphenylpyruvate dioxygenase;protein_id=UUF00968.1;transl_table=11 CP098604.1 Genbank gene 3031045 3031476 . + . ID=gene-NDY25_13235;Name=NDY25_13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13235 CP098604.1 Protein Homology CDS 3031045 3031476 . + 0 ID=cds-UUF00969.1;Parent=gene-NDY25_13235;Dbxref=NCBI_GP:UUF00969.1;Name=UUF00969.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346146.1;locus_tag=NDY25_13235;product=endonuclease domain-containing protein;protein_id=UUF00969.1;transl_table=11 CP098604.1 Genbank gene 3031473 3032840 . + . ID=gene-NDY25_13240;Name=hmgA;gbkey=Gene;gene=hmgA;gene_biotype=protein_coding;locus_tag=NDY25_13240 CP098604.1 Protein Homology CDS 3031473 3032840 . + 0 ID=cds-UUF00970.1;Parent=gene-NDY25_13240;Dbxref=NCBI_GP:UUF00970.1;Name=UUF00970.1;Ontology_term=GO:0006559,GO:0006572,GO:0004411;gbkey=CDS;gene=hmgA;go_function=homogentisate 1%2C2-dioxygenase activity|0004411||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050328.1;locus_tag=NDY25_13240;product=homogentisate 1%2C2-dioxygenase;protein_id=UUF00970.1;transl_table=11 CP098604.1 Genbank gene 3033223 3034203 . - . ID=gene-NDY25_13245;Name=NDY25_13245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13245 CP098604.1 Protein Homology CDS 3033223 3034203 . - 0 ID=cds-UUF00971.1;Parent=gene-NDY25_13245;Dbxref=NCBI_GP:UUF00971.1;Name=UUF00971.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_13245;product=IS5 family transposase;protein_id=UUF00971.1;transl_table=11 CP098604.1 Genbank pseudogene 3034761 3035781 . + . ID=gene-NDY25_13250;Name=NDY25_13250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13250;pseudo=true CP098604.1 Protein Homology CDS 3034761 3035781 . + 0 ID=cds-NDY25_13250;Parent=gene-NDY25_13250;Note=frameshifted;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013670.2;locus_tag=NDY25_13250;product=N-acetylmuramoyl-L-alanine amidase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 3035988 3036896 . - . ID=gene-NDY25_13255;Name=NDY25_13255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13255;pseudo=true CP098604.1 Protein Homology CDS 3035988 3036896 . - 0 ID=cds-NDY25_13255;Parent=gene-NDY25_13255;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117303.1;locus_tag=NDY25_13255;product=contractile injection system protein%2C VgrG/Pvc8 family;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 3037201 3037491 . - . ID=gene-NDY25_13260;Name=NDY25_13260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13260;pseudo=true CP098604.1 Protein Homology CDS 3037201 3037491 . - 0 ID=cds-NDY25_13260;Parent=gene-NDY25_13260;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165166.1;locus_tag=NDY25_13260;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3037606 3038714 . + . ID=gene-NDY25_13265;Name=NDY25_13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13265 CP098604.1 Protein Homology CDS 3037606 3037867 . + 0 ID=cds-UUF00972.1;Parent=gene-NDY25_13265;Dbxref=NCBI_GP:UUF00972.1;Name=UUF00972.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_13265;product=IS3 family transposase;protein_id=UUF00972.1;transl_table=11 CP098604.1 Protein Homology CDS 3037867 3038714 . + 2 ID=cds-UUF00972.1;Parent=gene-NDY25_13265;Dbxref=NCBI_GP:UUF00972.1;Name=UUF00972.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_13265;product=IS3 family transposase;protein_id=UUF00972.1;transl_table=11 CP098604.1 Genbank pseudogene 3038731 3038948 . - . ID=gene-NDY25_13270;Name=NDY25_13270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13270;pseudo=true CP098604.1 Protein Homology CDS 3038731 3038948 . - 0 ID=cds-NDY25_13270;Parent=gene-NDY25_13270;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165166.1;locus_tag=NDY25_13270;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3039147 3039773 . + . ID=gene-NDY25_13275;Name=NDY25_13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13275 CP098604.1 Protein Homology CDS 3039147 3039773 . + 0 ID=cds-UUF04646.1;Parent=gene-NDY25_13275;Dbxref=NCBI_GP:UUF04646.1;Name=UUF04646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575546.1;locus_tag=NDY25_13275;product=lectin;protein_id=UUF04646.1;transl_table=11 CP098604.1 Genbank gene 3039850 3040269 . - . ID=gene-NDY25_13280;Name=NDY25_13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13280 CP098604.1 Protein Homology CDS 3039850 3040269 . - 0 ID=cds-UUF00973.1;Parent=gene-NDY25_13280;Dbxref=NCBI_GP:UUF00973.1;Name=UUF00973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808317.1;locus_tag=NDY25_13280;product=Na+/H+ antiporter subunit G;protein_id=UUF00973.1;transl_table=11 CP098604.1 Genbank gene 3040266 3040550 . - . ID=gene-NDY25_13285;Name=NDY25_13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13285 CP098604.1 Protein Homology CDS 3040266 3040550 . - 0 ID=cds-UUF00974.1;Parent=gene-NDY25_13285;Dbxref=NCBI_GP:UUF00974.1;Name=UUF00974.1;Ontology_term=GO:0034220,GO:0015075;gbkey=CDS;go_function=ion transmembrane transporter activity|0015075||IEA;go_process=ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501684.1;locus_tag=NDY25_13285;product=K+/H+ antiporter subunit F;protein_id=UUF00974.1;transl_table=11 CP098604.1 Genbank gene 3040547 3041053 . - . ID=gene-NDY25_13290;Name=NDY25_13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13290 CP098604.1 Protein Homology CDS 3040547 3041053 . - 0 ID=cds-UUF00975.1;Parent=gene-NDY25_13290;Dbxref=NCBI_GP:UUF00975.1;Name=UUF00975.1;Ontology_term=GO:0006812,GO:0008324,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=cation transmembrane transporter activity|0008324||IEA;go_process=cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967828.1;locus_tag=NDY25_13290;product=Na+/H+ antiporter subunit E;protein_id=UUF00975.1;transl_table=11 CP098604.1 Genbank gene 3041050 3042594 . - . ID=gene-NDY25_13295;Name=NDY25_13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13295 CP098604.1 Protein Homology CDS 3041050 3042594 . - 0 ID=cds-UUF00976.1;Parent=gene-NDY25_13295;Dbxref=NCBI_GP:UUF00976.1;Name=UUF00976.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161271.1;locus_tag=NDY25_13295;product=monovalent cation/H+ antiporter subunit D;protein_id=UUF00976.1;transl_table=11 CP098604.1 Genbank gene 3042591 3042965 . - . ID=gene-NDY25_13300;Name=NDY25_13300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13300 CP098604.1 Protein Homology CDS 3042591 3042965 . - 0 ID=cds-UUF00977.1;Parent=gene-NDY25_13300;Dbxref=NCBI_GP:UUF00977.1;Name=UUF00977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346152.1;locus_tag=NDY25_13300;product=Na+/H+ antiporter subunit C;protein_id=UUF00977.1;transl_table=11 CP098604.1 Genbank pseudogene 3042965 3045794 . - . ID=gene-NDY25_13305;Name=NDY25_13305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13305;pseudo=true CP098604.1 Protein Homology CDS 3042965 3045794 . - 0 ID=cds-NDY25_13305;Parent=gene-NDY25_13305;Note=frameshifted;Ontology_term=GO:0098662,GO:0005451;gbkey=CDS;go_function=monovalent cation:proton antiporter activity|0005451||IEA;go_process=inorganic cation transmembrane transport|0098662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302198.1;locus_tag=NDY25_13305;product=monovalent cation/H+ antiporter subunit A;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3045961 3046863 . + . ID=gene-NDY25_13310;Name=NDY25_13310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13310 CP098604.1 Protein Homology CDS 3045961 3046863 . + 0 ID=cds-UUF00978.1;Parent=gene-NDY25_13310;Dbxref=NCBI_GP:UUF00978.1;Name=UUF00978.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808289.1;locus_tag=NDY25_13310;product=NAD-dependent epimerase/dehydratase family protein;protein_id=UUF00978.1;transl_table=11 CP098604.1 Genbank gene 3046879 3047364 . - . ID=gene-NDY25_13315;Name=NDY25_13315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13315 CP098604.1 Protein Homology CDS 3046879 3047364 . - 0 ID=cds-UUF00979.1;Parent=gene-NDY25_13315;Dbxref=NCBI_GP:UUF00979.1;Name=UUF00979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575562.1;locus_tag=NDY25_13315;product=DUF962 domain-containing protein;protein_id=UUF00979.1;transl_table=11 CP098604.1 Genbank pseudogene 3047464 3049058 . - . ID=gene-NDY25_13320;Name=NDY25_13320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13320;pseudo=true CP098604.1 Protein Homology CDS 3047464 3049058 . - 0 ID=cds-NDY25_13320;Parent=gene-NDY25_13320;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967835.1;locus_tag=NDY25_13320;product=M4 family metallopeptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3049492 3051222 . - . ID=gene-NDY25_13325;Name=NDY25_13325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13325 CP098604.1 Protein Homology CDS 3049492 3051222 . - 0 ID=cds-UUF00980.1;Parent=gene-NDY25_13325;Dbxref=NCBI_GP:UUF00980.1;Name=UUF00980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509227.1;locus_tag=NDY25_13325;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=UUF00980.1;transl_table=11 CP098604.1 Genbank gene 3051335 3051898 . - . ID=gene-NDY25_13330;Name=NDY25_13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13330 CP098604.1 Protein Homology CDS 3051335 3051898 . - 0 ID=cds-UUF00981.1;Parent=gene-NDY25_13330;Dbxref=NCBI_GP:UUF00981.1;Name=UUF00981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035703.1;locus_tag=NDY25_13330;product=hypothetical protein;protein_id=UUF00981.1;transl_table=11 CP098604.1 Genbank gene 3051978 3052475 . - . ID=gene-NDY25_13335;Name=NDY25_13335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13335 CP098604.1 Protein Homology CDS 3051978 3052475 . - 0 ID=cds-UUF00982.1;Parent=gene-NDY25_13335;Dbxref=NCBI_GP:UUF00982.1;Name=UUF00982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035704.1;locus_tag=NDY25_13335;product=hypothetical protein;protein_id=UUF00982.1;transl_table=11 CP098604.1 Genbank pseudogene 3052778 3053448 . - . ID=gene-NDY25_13340;Name=NDY25_13340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13340;pseudo=true CP098604.1 Protein Homology CDS 3052778 3053448 . - 0 ID=cds-NDY25_13340;Parent=gene-NDY25_13340;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437186.1;locus_tag=NDY25_13340;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3053670 3054596 . - . ID=gene-NDY25_13345;Name=NDY25_13345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13345 CP098604.1 Protein Homology CDS 3053670 3054596 . - 0 ID=cds-UUF00983.1;Parent=gene-NDY25_13345;Dbxref=NCBI_GP:UUF00983.1;Name=UUF00983.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448471.1;locus_tag=NDY25_13345;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=UUF00983.1;transl_table=11 CP098604.1 Genbank pseudogene 3054803 3055130 . + . ID=gene-NDY25_13350;Name=NDY25_13350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13350;pseudo=true CP098604.1 Protein Homology CDS 3054803 3055130 . + 0 ID=cds-NDY25_13350;Parent=gene-NDY25_13350;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157937.1;locus_tag=NDY25_13350;product=DnaJ domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3055272 3056111 . - . ID=gene-NDY25_13355;Name=NDY25_13355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13355 CP098604.1 Protein Homology CDS 3055272 3056111 . - 0 ID=cds-UUF00984.1;Parent=gene-NDY25_13355;Dbxref=NCBI_GP:UUF00984.1;Name=UUF00984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015471660.1;locus_tag=NDY25_13355;product=outer membrane beta-barrel protein;protein_id=UUF00984.1;transl_table=11 CP098604.1 Genbank gene 3056256 3056927 . + . ID=gene-NDY25_13360;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=NDY25_13360 CP098604.1 Protein Homology CDS 3056256 3056927 . + 0 ID=cds-UUF00985.1;Parent=gene-NDY25_13360;Dbxref=NCBI_GP:UUF00985.1;Name=UUF00985.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379428.1;locus_tag=NDY25_13360;product=ribulose-phosphate 3-epimerase;protein_id=UUF00985.1;transl_table=11 CP098604.1 Genbank gene 3056924 3057415 . + . ID=gene-NDY25_13365;Name=NDY25_13365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13365 CP098604.1 Protein Homology CDS 3056924 3057415 . + 0 ID=cds-UUF00986.1;Parent=gene-NDY25_13365;Dbxref=NCBI_GP:UUF00986.1;Name=UUF00986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368051.1;locus_tag=NDY25_13365;product=GNAT family N-acetyltransferase;protein_id=UUF00986.1;transl_table=11 CP098604.1 Genbank gene 3057648 3058577 . + . ID=gene-NDY25_13370;Name=yegS;gbkey=Gene;gene=yegS;gene_biotype=protein_coding;locus_tag=NDY25_13370 CP098604.1 Protein Homology CDS 3057648 3058577 . + 0 ID=cds-UUF00987.1;Parent=gene-NDY25_13370;Dbxref=NCBI_GP:UUF00987.1;Name=UUF00987.1;Ontology_term=GO:0008150,GO:0001727,GO:0005575;gbkey=CDS;gene=yegS;go_component=cellular_component|0005575||IEA;go_function=lipid kinase activity|0001727||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035711.1;locus_tag=NDY25_13370;product=lipid kinase YegS;protein_id=UUF00987.1;transl_table=11 CP098604.1 Genbank gene 3059049 3060524 . + . ID=gene-NDY25_13375;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=NDY25_13375 CP098604.1 Protein Homology CDS 3059049 3060524 . + 0 ID=cds-UUF00988.1;Parent=gene-NDY25_13375;Dbxref=NCBI_GP:UUF00988.1;Name=UUF00988.1;Ontology_term=GO:0000162,GO:0004049;gbkey=CDS;gene=trpE;go_function=anthranilate synthase activity|0004049||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575582.1;locus_tag=NDY25_13375;product=anthranilate synthase component I;protein_id=UUF00988.1;transl_table=11 CP098604.1 Genbank gene 3060524 3061591 . + . ID=gene-NDY25_13380;Name=NDY25_13380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13380 CP098604.1 Protein Homology CDS 3060524 3061591 . + 0 ID=cds-UUF00989.1;Parent=gene-NDY25_13380;Dbxref=NCBI_GP:UUF00989.1;Name=UUF00989.1;Ontology_term=GO:0009058,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967848.1;locus_tag=NDY25_13380;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=UUF00989.1;transl_table=11 CP098604.1 Genbank gene 3062305 3064467 . - . ID=gene-NDY25_13385;Name=NDY25_13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13385 CP098604.1 Protein Homology CDS 3062305 3064467 . - 0 ID=cds-UUF00990.1;Parent=gene-NDY25_13385;Dbxref=NCBI_GP:UUF00990.1;Name=UUF00990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808557.1;locus_tag=NDY25_13385;product=type III effector protein XopP;protein_id=UUF00990.1;transl_table=11 CP098604.1 Genbank gene 3065106 3066023 . + . ID=gene-NDY25_13390;Name=NDY25_13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13390 CP098604.1 Protein Homology CDS 3065106 3066023 . + 0 ID=cds-UUF00991.1;Parent=gene-NDY25_13390;Dbxref=NCBI_GP:UUF00991.1;Name=UUF00991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507126.1;locus_tag=NDY25_13390;product=type III effector;protein_id=UUF00991.1;transl_table=11 CP098604.1 Genbank gene 3066170 3066256 . + . ID=gene-NDY25_13395;Name=NDY25_13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13395 CP098604.1 Protein Homology CDS 3066170 3066256 . + 0 ID=cds-UUF04647.1;Parent=gene-NDY25_13395;Dbxref=NCBI_GP:UUF04647.1;Name=UUF04647.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013677.2;locus_tag=NDY25_13395;product=hypothetical protein;protein_id=UUF04647.1;transl_table=11 CP098604.1 Genbank pseudogene 3066298 3066565 . + . ID=gene-NDY25_13400;Name=NDY25_13400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13400;pseudo=true CP098604.1 Protein Homology CDS 3066298 3066565 . + 0 ID=cds-NDY25_13400;Parent=gene-NDY25_13400;Note=frameshifted%3B internal stop%3B incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612184.1;locus_tag=NDY25_13400;product=IS3 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3066858 3068297 . + . ID=gene-NDY25_13405;Name=NDY25_13405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13405 CP098604.1 Protein Homology CDS 3066858 3068297 . + 0 ID=cds-UUF00992.1;Parent=gene-NDY25_13405;Dbxref=NCBI_GP:UUF00992.1;Name=UUF00992.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944047.1;locus_tag=NDY25_13405;product=hypothetical protein;protein_id=UUF00992.1;transl_table=11 CP098604.1 Genbank pseudogene 3068689 3071597 . + . ID=gene-NDY25_13410;Name=NDY25_13410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13410;pseudo=true CP098604.1 Protein Homology CDS 3068689 3071597 . + 0 ID=cds-NDY25_13410;Parent=gene-NDY25_13410;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448478.1;locus_tag=NDY25_13410;product=serine kinase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 3072149 3072441 . - . ID=gene-NDY25_13415;Name=NDY25_13415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13415;pseudo=true CP098604.1 Protein Homology CDS 3072149 3072441 . - 0 ID=cds-NDY25_13415;Parent=gene-NDY25_13415;Note=frameshifted%3B internal stop%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_13415;product=IS1595 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3072694 3072900 . + . ID=gene-NDY25_13420;Name=NDY25_13420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13420 CP098604.1 GeneMarkS-2+ CDS 3072694 3072900 . + 0 ID=cds-UUF00993.1;Parent=gene-NDY25_13420;Dbxref=NCBI_GP:UUF00993.1;Name=UUF00993.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13420;product=hypothetical protein;protein_id=UUF00993.1;transl_table=11 CP098604.1 Genbank pseudogene 3073246 3074195 . + . ID=gene-NDY25_13425;Name=NDY25_13425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13425;pseudo=true CP098604.1 Protein Homology CDS 3073246 3074195 . + 0 ID=cds-NDY25_13425;Parent=gene-NDY25_13425;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1;locus_tag=NDY25_13425;product=IS481 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3074259 3075239 . + . ID=gene-NDY25_13430;Name=NDY25_13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13430 CP098604.1 Protein Homology CDS 3074259 3075239 . + 0 ID=cds-UUF00994.1;Parent=gene-NDY25_13430;Dbxref=NCBI_GP:UUF00994.1;Name=UUF00994.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_13430;product=IS5 family transposase;protein_id=UUF00994.1;transl_table=11 CP098604.1 Genbank pseudogene 3075329 3078696 . - . ID=gene-NDY25_13435;Name=NDY25_13435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13435;pseudo=true CP098604.1 Protein Homology CDS 3075329 3078696 . - 0 ID=cds-NDY25_13435;Parent=gene-NDY25_13435;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301754.1;locus_tag=NDY25_13435;product=type III effector protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3078817 3079797 . - . ID=gene-NDY25_13440;Name=NDY25_13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13440 CP098604.1 Protein Homology CDS 3078817 3079797 . - 0 ID=cds-UUF00995.1;Parent=gene-NDY25_13440;Dbxref=NCBI_GP:UUF00995.1;Name=UUF00995.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_13440;product=IS5 family transposase;protein_id=UUF00995.1;transl_table=11 CP098604.1 Genbank pseudogene 3079860 3081295 . - . ID=gene-NDY25_13445;Name=NDY25_13445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13445;pseudo=true CP098604.1 Protein Homology CDS 3079860 3081295 . - 0 ID=cds-NDY25_13445;Parent=gene-NDY25_13445;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091462.1;locus_tag=NDY25_13445;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3081352 3082332 . + . ID=gene-NDY25_13450;Name=NDY25_13450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13450 CP098604.1 Protein Homology CDS 3081352 3082332 . + 0 ID=cds-UUF00996.1;Parent=gene-NDY25_13450;Dbxref=NCBI_GP:UUF00996.1;Name=UUF00996.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_13450;product=IS5 family transposase;protein_id=UUF00996.1;transl_table=11 CP098604.1 Genbank gene 3082423 3083970 . - . ID=gene-NDY25_13455;Name=NDY25_13455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13455 CP098604.1 GeneMarkS-2+ CDS 3082423 3083970 . - 0 ID=cds-UUF00997.1;Parent=gene-NDY25_13455;Dbxref=NCBI_GP:UUF00997.1;Name=UUF00997.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13455;product=hypothetical protein;protein_id=UUF00997.1;transl_table=11 CP098604.1 Genbank pseudogene 3084761 3085739 . - . ID=gene-NDY25_13460;Name=NDY25_13460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13460;pseudo=true CP098604.1 Protein Homology CDS 3084761 3085739 . - 0 ID=cds-NDY25_13460;Parent=gene-NDY25_13460;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_13460;product=IS5 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3086114 3086560 . + . ID=gene-NDY25_13465;Name=NDY25_13465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13465 CP098604.1 Protein Homology CDS 3086114 3086560 . + 0 ID=cds-UUF04648.1;Parent=gene-NDY25_13465;Dbxref=NCBI_GP:UUF04648.1;Name=UUF04648.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367891.1;locus_tag=NDY25_13465;product=hypothetical protein;protein_id=UUF04648.1;transl_table=11 CP098604.1 Genbank gene 3086557 3088590 . + . ID=gene-NDY25_13470;Name=NDY25_13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13470 CP098604.1 Protein Homology CDS 3086557 3088590 . + 0 ID=cds-UUF00998.1;Parent=gene-NDY25_13470;Dbxref=NCBI_GP:UUF00998.1;Name=UUF00998.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507103.1;locus_tag=NDY25_13470;product=hypothetical protein;protein_id=UUF00998.1;transl_table=11 CP098604.1 Genbank gene 3088702 3092658 . - . ID=gene-NDY25_13475;Name=NDY25_13475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13475 CP098604.1 Protein Homology CDS 3088702 3092658 . - 0 ID=cds-UUF00999.1;Parent=gene-NDY25_13475;Dbxref=NCBI_GP:UUF00999.1;Name=UUF00999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451046.1;locus_tag=NDY25_13475;product=hypothetical protein;protein_id=UUF00999.1;transl_table=11 CP098604.1 Genbank gene 3092915 3093793 . - . ID=gene-NDY25_13480;Name=NDY25_13480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13480 CP098604.1 Protein Homology CDS 3092915 3093793 . - 0 ID=cds-UUF01000.1;Parent=gene-NDY25_13480;Dbxref=NCBI_GP:UUF01000.1;Name=UUF01000.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015187.2;locus_tag=NDY25_13480;product=pectate lyase;protein_id=UUF01000.1;transl_table=11 CP098604.1 Genbank gene 3094239 3094709 . - . ID=gene-NDY25_13485;Name=NDY25_13485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13485 CP098604.1 Protein Homology CDS 3094239 3094709 . - 0 ID=cds-UUF01001.1;Parent=gene-NDY25_13485;Dbxref=NCBI_GP:UUF01001.1;Name=UUF01001.1;Ontology_term=GO:0030254;gbkey=CDS;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912720.1;locus_tag=NDY25_13485;product=CesT family type III secretion system chaperone;protein_id=UUF01001.1;transl_table=11 CP098604.1 Genbank gene 3094778 3095044 . - . ID=gene-NDY25_13490;Name=NDY25_13490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13490 CP098604.1 GeneMarkS-2+ CDS 3094778 3095044 . - 0 ID=cds-UUF01002.1;Parent=gene-NDY25_13490;Dbxref=NCBI_GP:UUF01002.1;Name=UUF01002.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13490;product=hypothetical protein;protein_id=UUF01002.1;transl_table=11 CP098604.1 Genbank gene 3095118 3095360 . - . ID=gene-NDY25_13495;Name=NDY25_13495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13495 CP098604.1 GeneMarkS-2+ CDS 3095118 3095360 . - 0 ID=cds-UUF01003.1;Parent=gene-NDY25_13495;Dbxref=NCBI_GP:UUF01003.1;Name=UUF01003.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13495;product=serine kinase;protein_id=UUF01003.1;transl_table=11 CP098604.1 Genbank gene 3095383 3096318 . - . ID=gene-NDY25_13500;Name=NDY25_13500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13500 CP098604.1 Protein Homology CDS 3095383 3096318 . - 0 ID=cds-UUF01004.1;Parent=gene-NDY25_13500;Dbxref=NCBI_GP:UUF01004.1;Name=UUF01004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802868.1;locus_tag=NDY25_13500;product=FHA domain-containing protein;protein_id=UUF01004.1;transl_table=11 CP098604.1 Genbank gene 3096315 3097130 . - . ID=gene-NDY25_13505;Name=NDY25_13505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13505 CP098604.1 Protein Homology CDS 3096315 3097130 . - 0 ID=cds-UUF01005.1;Parent=gene-NDY25_13505;Dbxref=NCBI_GP:UUF01005.1;Name=UUF01005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438891.1;locus_tag=NDY25_13505;product=4-hydroxyphenylacetate catabolism regulator HpaA;protein_id=UUF01005.1;transl_table=11 CP098604.1 Genbank gene 3097127 3097387 . - . ID=gene-NDY25_13510;Name=sctS;gbkey=Gene;gene=sctS;gene_biotype=protein_coding;locus_tag=NDY25_13510 CP098604.1 Protein Homology CDS 3097127 3097387 . - 0 ID=cds-UUF01006.1;Parent=gene-NDY25_13510;Dbxref=NCBI_GP:UUF01006.1;Name=UUF01006.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctS;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901415.1;locus_tag=NDY25_13510;product=type III secretion system export apparatus subunit SctS;protein_id=UUF01006.1;transl_table=11 CP098604.1 Genbank gene 3097392 3098036 . - . ID=gene-NDY25_13515;Name=sctR;gbkey=Gene;gene=sctR;gene_biotype=protein_coding;locus_tag=NDY25_13515 CP098604.1 Protein Homology CDS 3097392 3098036 . - 0 ID=cds-UUF01007.1;Parent=gene-NDY25_13515;Dbxref=NCBI_GP:UUF01007.1;Name=UUF01007.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;gene=sctR;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158888.1;locus_tag=NDY25_13515;product=type III secretion system export apparatus subunit SctR;protein_id=UUF01007.1;transl_table=11 CP098604.1 Genbank gene 3098023 3098976 . - . ID=gene-NDY25_13520;Name=sctQ;gbkey=Gene;gene=sctQ;gene_biotype=protein_coding;locus_tag=NDY25_13520 CP098604.1 Protein Homology CDS 3098023 3098976 . - 0 ID=cds-UUF04649.1;Parent=gene-NDY25_13520;Dbxref=NCBI_GP:UUF04649.1;Name=UUF04649.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;gene=sctQ;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156505.1;locus_tag=NDY25_13520;product=type III secretion system cytoplasmic ring protein SctQ;protein_id=UUF04649.1;transl_table=11 CP098604.1 Genbank gene 3099070 3099717 . - . ID=gene-NDY25_13525;Name=sctP;gbkey=Gene;gene=sctP;gene_biotype=protein_coding;locus_tag=NDY25_13525 CP098604.1 Protein Homology CDS 3099070 3099717 . - 0 ID=cds-UUF01008.1;Parent=gene-NDY25_13525;Dbxref=NCBI_GP:UUF01008.1;Name=UUF01008.1;gbkey=CDS;gene=sctP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575445.1;locus_tag=NDY25_13525;product=type III secretion system protein SctP;protein_id=UUF01008.1;transl_table=11 CP098604.1 Genbank gene 3099717 3101639 . - . ID=gene-NDY25_13530;Name=NDY25_13530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13530 CP098604.1 Protein Homology CDS 3099717 3101639 . - 0 ID=cds-UUF01009.1;Parent=gene-NDY25_13530;Dbxref=NCBI_GP:UUF01009.1;Name=UUF01009.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438888.1;locus_tag=NDY25_13530;product=FHIPEP family type III secretion protein;protein_id=UUF01009.1;transl_table=11 CP098604.1 Genbank gene 3101648 3102721 . - . ID=gene-NDY25_13535;Name=sctU;gbkey=Gene;gene=sctU;gene_biotype=protein_coding;locus_tag=NDY25_13535 CP098604.1 Protein Homology CDS 3101648 3102721 . - 0 ID=cds-UUF01010.1;Parent=gene-NDY25_13535;Dbxref=NCBI_GP:UUF01010.1;Name=UUF01010.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctU;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912703.1;locus_tag=NDY25_13535;product=type III secretion system export apparatus subunit SctU;protein_id=UUF01010.1;transl_table=11 CP098604.1 Genbank gene 3102934 3103389 . + . ID=gene-NDY25_13540;Name=NDY25_13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13540 CP098604.1 Protein Homology CDS 3102934 3103389 . + 0 ID=cds-UUF01011.1;Parent=gene-NDY25_13540;Dbxref=NCBI_GP:UUF01011.1;Name=UUF01011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156509.1;locus_tag=NDY25_13540;product=HrpB1 family type III secretion system apparatus protein;protein_id=UUF01011.1;transl_table=11 CP098604.1 Genbank gene 3103421 3103813 . + . ID=gene-NDY25_13545;Name=NDY25_13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13545 CP098604.1 Protein Homology CDS 3103421 3103813 . + 0 ID=cds-UUF01012.1;Parent=gene-NDY25_13545;Dbxref=NCBI_GP:UUF01012.1;Name=UUF01012.1;Ontology_term=GO:0030254,GO:0003824,GO:0030257;gbkey=CDS;go_component=type III protein secretion system complex|0030257||IEA;go_function=catalytic activity|0003824||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014505147.1;locus_tag=NDY25_13545;product=type III secretion protein HrpB2;protein_id=UUF01012.1;transl_table=11 CP098604.1 Genbank gene 3103815 3104579 . + . ID=gene-NDY25_13550;Name=sctJ;gbkey=Gene;gene=sctJ;gene_biotype=protein_coding;locus_tag=NDY25_13550 CP098604.1 Protein Homology CDS 3103815 3104579 . + 0 ID=cds-UUF01013.1;Parent=gene-NDY25_13550;Dbxref=NCBI_GP:UUF01013.1;Name=UUF01013.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctJ;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965380.1;locus_tag=NDY25_13550;product=type III secretion inner membrane ring lipoprotein SctJ;protein_id=UUF01013.1;transl_table=11 CP098604.1 Genbank gene 3104589 3105218 . + . ID=gene-NDY25_13555;Name=NDY25_13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13555 CP098604.1 Protein Homology CDS 3104589 3105218 . + 0 ID=cds-UUF01014.1;Parent=gene-NDY25_13555;Dbxref=NCBI_GP:UUF01014.1;Name=UUF01014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171652.1;locus_tag=NDY25_13555;product=type III secretion protein HrpB4;protein_id=UUF01014.1;transl_table=11 CP098604.1 Genbank gene 3105203 3105904 . + . ID=gene-NDY25_13560;Name=sctL;gbkey=Gene;gene=sctL;gene_biotype=protein_coding;locus_tag=NDY25_13560 CP098604.1 Protein Homology CDS 3105203 3105904 . + 0 ID=cds-UUF01015.1;Parent=gene-NDY25_13560;Dbxref=NCBI_GP:UUF01015.1;Name=UUF01015.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;gene=sctL;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118385.1;locus_tag=NDY25_13560;product=type III secretion system stator protein SctL;protein_id=UUF01015.1;transl_table=11 CP098604.1 Genbank gene 3105894 3107222 . + . ID=gene-NDY25_13565;Name=sctN;gbkey=Gene;gene=sctN;gene_biotype=protein_coding;locus_tag=NDY25_13565 CP098604.1 Protein Homology CDS 3105894 3107222 . + 0 ID=cds-UUF01016.1;Parent=gene-NDY25_13565;Dbxref=NCBI_GP:UUF01016.1;Name=UUF01016.1;Ontology_term=GO:0030254,GO:0046961,GO:0030257;gbkey=CDS;gene=sctN;go_component=type III protein secretion system complex|0030257||IEA;go_function=proton-transporting ATPase activity%2C rotational mechanism|0046961||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972469.1;locus_tag=NDY25_13565;product=type III secretion system ATPase SctN;protein_id=UUF01016.1;transl_table=11 CP098604.1 Genbank gene 3107215 3107724 . + . ID=gene-NDY25_13570;Name=NDY25_13570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13570 CP098604.1 Protein Homology CDS 3107215 3107724 . + 0 ID=cds-UUF01017.1;Parent=gene-NDY25_13570;Dbxref=NCBI_GP:UUF01017.1;Name=UUF01017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301113.1;locus_tag=NDY25_13570;product=type III secretion protein HrpB7;protein_id=UUF01017.1;transl_table=11 CP098604.1 Genbank gene 3107721 3108551 . + . ID=gene-NDY25_13575;Name=sctT;gbkey=Gene;gene=sctT;gene_biotype=protein_coding;locus_tag=NDY25_13575 CP098604.1 Protein Homology CDS 3107721 3108551 . + 0 ID=cds-UUF01018.1;Parent=gene-NDY25_13575;Dbxref=NCBI_GP:UUF01018.1;Name=UUF01018.1;Ontology_term=GO:0030254;gbkey=CDS;gene=sctT;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089146.1;locus_tag=NDY25_13575;product=type III secretion system export apparatus subunit SctT;protein_id=UUF01018.1;transl_table=11 CP098604.1 Genbank gene 3108732 3110552 . + . ID=gene-NDY25_13580;Name=sctC;gbkey=Gene;gene=sctC;gene_biotype=protein_coding;locus_tag=NDY25_13580 CP098604.1 Protein Homology CDS 3108732 3110552 . + 0 ID=cds-UUF01019.1;Parent=gene-NDY25_13580;Dbxref=NCBI_GP:UUF01019.1;Name=UUF01019.1;gbkey=CDS;gene=sctC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972464.1;locus_tag=NDY25_13580;product=type III secretion system outer membrane ring subunit SctC;protein_id=UUF01019.1;transl_table=11 CP098604.1 Genbank gene 3110479 3110976 . - . ID=gene-NDY25_13585;Name=NDY25_13585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13585 CP098604.1 Protein Homology CDS 3110479 3110976 . - 0 ID=cds-UUF01020.1;Parent=gene-NDY25_13585;Dbxref=NCBI_GP:UUF01020.1;Name=UUF01020.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257092.1;locus_tag=NDY25_13585;product=hypothetical protein;protein_id=UUF01020.1;transl_table=11 CP098604.1 Genbank gene 3111442 3111924 . + . ID=gene-NDY25_13590;Name=NDY25_13590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13590 CP098604.1 Protein Homology CDS 3111442 3111924 . + 0 ID=cds-UUF04650.1;Parent=gene-NDY25_13590;Dbxref=NCBI_GP:UUF04650.1;Name=UUF04650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438883.1;locus_tag=NDY25_13590;product=lytic transglycosylase domain-containing protein;protein_id=UUF04650.1;transl_table=11 CP098604.1 Genbank gene 3112021 3113622 . - . ID=gene-NDY25_13595;Name=NDY25_13595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13595 CP098604.1 Protein Homology CDS 3112021 3113622 . - 0 ID=cds-UUF01021.1;Parent=gene-NDY25_13595;Dbxref=NCBI_GP:UUF01021.1;Name=UUF01021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304790.1;locus_tag=NDY25_13595;product=hypothetical protein;protein_id=UUF01021.1;transl_table=11 CP098604.1 Genbank gene 3114251 3115831 . - . ID=gene-NDY25_13600;Name=NDY25_13600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13600 CP098604.1 Protein Homology CDS 3114251 3115831 . - 0 ID=cds-UUF01022.1;Parent=gene-NDY25_13600;Dbxref=NCBI_GP:UUF01022.1;Name=UUF01022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174430.1;locus_tag=NDY25_13600;product=thioredoxin family protein;protein_id=UUF01022.1;transl_table=11 CP098604.1 Genbank gene 3116258 3118051 . + . ID=gene-NDY25_13605;Name=NDY25_13605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13605 CP098604.1 Protein Homology CDS 3116258 3118051 . + 0 ID=cds-UUF01023.1;Parent=gene-NDY25_13605;Dbxref=NCBI_GP:UUF01023.1;Name=UUF01023.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451019.1;locus_tag=NDY25_13605;product=methyl-accepting chemotaxis protein;protein_id=UUF01023.1;transl_table=11 CP098604.1 Genbank gene 3118392 3118970 . + . ID=gene-NDY25_13610;Name=NDY25_13610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13610 CP098604.1 Protein Homology CDS 3118392 3118970 . + 0 ID=cds-UUF01024.1;Parent=gene-NDY25_13610;Dbxref=NCBI_GP:UUF01024.1;Name=UUF01024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483050.1;locus_tag=NDY25_13610;product=aminodeoxychorismate/anthranilate synthase component II;protein_id=UUF01024.1;transl_table=11 CP098604.1 Genbank gene 3119140 3119772 . + . ID=gene-NDY25_13615;Name=NDY25_13615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13615 CP098604.1 Protein Homology CDS 3119140 3119772 . + 0 ID=cds-UUF01025.1;Parent=gene-NDY25_13615;Dbxref=NCBI_GP:UUF01025.1;Name=UUF01025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158907.1;locus_tag=NDY25_13615;product=flavin reductase family protein;protein_id=UUF01025.1;transl_table=11 CP098604.1 Genbank gene 3119889 3120926 . + . ID=gene-NDY25_13620;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=NDY25_13620 CP098604.1 Protein Homology CDS 3119889 3120926 . + 0 ID=cds-UUF01026.1;Parent=gene-NDY25_13620;Dbxref=NCBI_GP:UUF01026.1;Name=UUF01026.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089193.1;locus_tag=NDY25_13620;product=anthranilate phosphoribosyltransferase;protein_id=UUF01026.1;transl_table=11 CP098604.1 Genbank gene 3121109 3121906 . + . ID=gene-NDY25_13625;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=NDY25_13625 CP098604.1 Protein Homology CDS 3121109 3121906 . + 0 ID=cds-UUF01027.1;Parent=gene-NDY25_13625;Dbxref=NCBI_GP:UUF01027.1;Name=UUF01027.1;Ontology_term=GO:0006568,GO:0004425;gbkey=CDS;gene=trpC;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA;go_process=tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902428.1;locus_tag=NDY25_13625;product=indole-3-glycerol phosphate synthase TrpC;protein_id=UUF01027.1;transl_table=11 CP098604.1 Genbank gene 3121899 3122615 . + . ID=gene-NDY25_13630;Name=NDY25_13630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13630 CP098604.1 Protein Homology CDS 3121899 3122615 . + 0 ID=cds-UUF01028.1;Parent=gene-NDY25_13630;Dbxref=NCBI_GP:UUF01028.1;Name=UUF01028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808250.1;locus_tag=NDY25_13630;product=haloacid dehalogenase-like hydrolase;protein_id=UUF01028.1;transl_table=11 CP098604.1 Genbank gene 3122965 3123657 . - . ID=gene-NDY25_13635;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=NDY25_13635 CP098604.1 Protein Homology CDS 3122965 3123657 . - 0 ID=cds-UUF01029.1;Parent=gene-NDY25_13635;Dbxref=NCBI_GP:UUF01029.1;Name=UUF01029.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368067.1;locus_tag=NDY25_13635;product=cAMP-activated global transcriptional regulator CRP;protein_id=UUF01029.1;transl_table=11 CP098604.1 Genbank gene 3123795 3124589 . + . ID=gene-NDY25_13640;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=NDY25_13640 CP098604.1 Protein Homology CDS 3123795 3124589 . + 0 ID=cds-UUF01030.1;Parent=gene-NDY25_13640;Dbxref=NCBI_GP:UUF01030.1;Name=UUF01030.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411315.1;locus_tag=NDY25_13640;product=adenosylmethionine decarboxylase;protein_id=UUF01030.1;transl_table=11 CP098604.1 Genbank gene 3124742 3125053 . + . ID=gene-NDY25_13645;Name=NDY25_13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13645 CP098604.1 Protein Homology CDS 3124742 3125053 . + 0 ID=cds-UUF01031.1;Parent=gene-NDY25_13645;Dbxref=NCBI_GP:UUF01031.1;Name=UUF01031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451011.1;locus_tag=NDY25_13645;product=multidrug efflux SMR transporter;protein_id=UUF01031.1;transl_table=11 CP098604.1 Genbank gene 3125064 3125717 . - . ID=gene-NDY25_13650;Name=coq7;gbkey=Gene;gene=coq7;gene_biotype=protein_coding;locus_tag=NDY25_13650 CP098604.1 Protein Homology CDS 3125064 3125717 . - 0 ID=cds-UUF01032.1;Parent=gene-NDY25_13650;Dbxref=NCBI_GP:UUF01032.1;Name=UUF01032.1;Ontology_term=GO:0006744,GO:0004497;gbkey=CDS;gene=coq7;go_function=monooxygenase activity|0004497||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451010.1;locus_tag=NDY25_13650;product=2-polyprenyl-3-methyl-6-methoxy-1%2C4-benzoquinone monooxygenase;protein_id=UUF01032.1;transl_table=11 CP098604.1 Genbank gene 3125899 3126327 . + . ID=gene-NDY25_13655;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=NDY25_13655 CP098604.1 Protein Homology CDS 3125899 3126327 . + 0 ID=cds-UUF01033.1;Parent=gene-NDY25_13655;Dbxref=NCBI_GP:UUF01033.1;Name=UUF01033.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplM;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1;locus_tag=NDY25_13655;product=50S ribosomal protein L13;protein_id=UUF01033.1;transl_table=11 CP098604.1 Genbank gene 3126330 3126722 . + . ID=gene-NDY25_13660;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=NDY25_13660 CP098604.1 Protein Homology CDS 3126330 3126722 . + 0 ID=cds-UUF01034.1;Parent=gene-NDY25_13660;Dbxref=NCBI_GP:UUF01034.1;Name=UUF01034.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1;locus_tag=NDY25_13660;product=30S ribosomal protein S9;protein_id=UUF01034.1;transl_table=11 CP098604.1 Genbank gene 3126878 3126951 . - . ID=gene-NDY25_13665;Name=NDY25_13665;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_13665 CP098604.1 tRNAscan-SE tRNA 3126878 3126951 . - . ID=rna-NDY25_13665;Parent=gene-NDY25_13665;anticodon=(pos:complement(3126917..3126919));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_13665;product=tRNA-Gln CP098604.1 tRNAscan-SE exon 3126878 3126951 . - . ID=exon-NDY25_13665-1;Parent=rna-NDY25_13665;anticodon=(pos:complement(3126917..3126919));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_13665;product=tRNA-Gln CP098604.1 Genbank gene 3127004 3127080 . - . ID=gene-NDY25_13670;Name=NDY25_13670;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_13670 CP098604.1 tRNAscan-SE tRNA 3127004 3127080 . - . ID=rna-NDY25_13670;Parent=gene-NDY25_13670;anticodon=(pos:complement(3127044..3127046));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_13670;product=tRNA-Met CP098604.1 tRNAscan-SE exon 3127004 3127080 . - . ID=exon-NDY25_13670-1;Parent=rna-NDY25_13670;anticodon=(pos:complement(3127044..3127046));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_13670;product=tRNA-Met CP098604.1 Genbank gene 3127199 3127816 . + . ID=gene-NDY25_13675;Name=NDY25_13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13675 CP098604.1 Protein Homology CDS 3127199 3127816 . + 0 ID=cds-UUF01035.1;Parent=gene-NDY25_13675;Dbxref=NCBI_GP:UUF01035.1;Name=UUF01035.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167453.1;locus_tag=NDY25_13675;product=RNA pyrophosphohydrolase;protein_id=UUF01035.1;transl_table=11 CP098604.1 Genbank gene 3127897 3128106 . + . ID=gene-NDY25_13680;Name=NDY25_13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13680 CP098604.1 Protein Homology CDS 3127897 3128106 . + 0 ID=cds-UUF01036.1;Parent=gene-NDY25_13680;Dbxref=NCBI_GP:UUF01036.1;Name=UUF01036.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483089.1;locus_tag=NDY25_13680;product=(2Fe-2S)-binding protein;protein_id=UUF01036.1;transl_table=11 CP098604.1 Genbank gene 3128353 3128823 . + . ID=gene-NDY25_13685;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=NDY25_13685 CP098604.1 Protein Homology CDS 3128353 3128823 . + 0 ID=cds-UUF01037.1;Parent=gene-NDY25_13685;Dbxref=NCBI_GP:UUF01037.1;Name=UUF01037.1;Ontology_term=GO:0006880,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular sequestering of iron ion|0006880||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808230.1;locus_tag=NDY25_13685;product=bacterioferritin;protein_id=UUF01037.1;transl_table=11 CP098604.1 Genbank gene 3128909 3131176 . - . ID=gene-NDY25_13690;Name=NDY25_13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13690 CP098604.1 Protein Homology CDS 3128909 3131176 . - 0 ID=cds-UUF04651.1;Parent=gene-NDY25_13690;Dbxref=NCBI_GP:UUF04651.1;Name=UUF04651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902420.1;locus_tag=NDY25_13690;product=ATP-binding protein;protein_id=UUF04651.1;transl_table=11 CP098604.1 Genbank gene 3131217 3133172 . - . ID=gene-NDY25_13695;Name=NDY25_13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13695 CP098604.1 Protein Homology CDS 3131217 3133172 . - 0 ID=cds-UUF01038.1;Parent=gene-NDY25_13695;Dbxref=NCBI_GP:UUF01038.1;Name=UUF01038.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462808.1;locus_tag=NDY25_13695;product=EAL domain-containing protein;protein_id=UUF01038.1;transl_table=11 CP098604.1 Genbank gene 3133211 3133837 . - . ID=gene-NDY25_13700;Name=NDY25_13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13700 CP098604.1 Protein Homology CDS 3133211 3133837 . - 0 ID=cds-UUF01039.1;Parent=gene-NDY25_13700;Dbxref=NCBI_GP:UUF01039.1;Name=UUF01039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808223.1;locus_tag=NDY25_13700;product=DUF4126 domain-containing protein;protein_id=UUF01039.1;transl_table=11 CP098604.1 Genbank gene 3133948 3134718 . + . ID=gene-NDY25_13705;Name=NDY25_13705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13705 CP098604.1 Protein Homology CDS 3133948 3134718 . + 0 ID=cds-UUF01040.1;Parent=gene-NDY25_13705;Dbxref=NCBI_GP:UUF01040.1;Name=UUF01040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574003.1;locus_tag=NDY25_13705;product=hypothetical protein;protein_id=UUF01040.1;transl_table=11 CP098604.1 Genbank gene 3134723 3135172 . + . ID=gene-NDY25_13710;Name=NDY25_13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13710 CP098604.1 Protein Homology CDS 3134723 3135172 . + 0 ID=cds-UUF01041.1;Parent=gene-NDY25_13710;Dbxref=NCBI_GP:UUF01041.1;Name=UUF01041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483106.1;locus_tag=NDY25_13710;product=polymer-forming cytoskeletal protein;protein_id=UUF01041.1;transl_table=11 CP098604.1 Genbank gene 3135256 3135642 . + . ID=gene-NDY25_13715;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=NDY25_13715 CP098604.1 Protein Homology CDS 3135256 3135642 . + 0 ID=cds-UUF01042.1;Parent=gene-NDY25_13715;Dbxref=NCBI_GP:UUF01042.1;Name=UUF01042.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411302.1;locus_tag=NDY25_13715;product=iron-sulfur cluster insertion protein ErpA;protein_id=UUF01042.1;transl_table=11 CP098604.1 Genbank gene 3135748 3136638 . + . ID=gene-NDY25_13720;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=NDY25_13720 CP098604.1 Protein Homology CDS 3135748 3136638 . + 0 ID=cds-UUF01043.1;Parent=gene-NDY25_13720;Dbxref=NCBI_GP:UUF01043.1;Name=UUF01043.1;Ontology_term=GO:0000210,GO:0016787;gbkey=CDS;gene=nudC;go_function=NAD+ diphosphatase activity|0000210||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914180.1;locus_tag=NDY25_13720;product=NAD(+) diphosphatase;protein_id=UUF01043.1;transl_table=11 CP098604.1 Genbank gene 3136718 3137611 . + . ID=gene-NDY25_13725;Name=NDY25_13725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13725 CP098604.1 Protein Homology CDS 3136718 3137611 . + 0 ID=cds-UUF01044.1;Parent=gene-NDY25_13725;Dbxref=NCBI_GP:UUF01044.1;Name=UUF01044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019768466.1;locus_tag=NDY25_13725;product=hypothetical protein;protein_id=UUF01044.1;transl_table=11 CP098604.1 Genbank gene 3137654 3138064 . - . ID=gene-NDY25_13730;Name=NDY25_13730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13730 CP098604.1 Protein Homology CDS 3137654 3138064 . - 0 ID=cds-UUF01045.1;Parent=gene-NDY25_13730;Dbxref=NCBI_GP:UUF01045.1;Name=UUF01045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849923.1;locus_tag=NDY25_13730;product=DUF2752 domain-containing protein;protein_id=UUF01045.1;transl_table=11 CP098604.1 Genbank gene 3138064 3138408 . - . ID=gene-NDY25_13735;Name=NDY25_13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13735 CP098604.1 Protein Homology CDS 3138064 3138408 . - 0 ID=cds-UUF01046.1;Parent=gene-NDY25_13735;Dbxref=NCBI_GP:UUF01046.1;Name=UUF01046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804995.1;locus_tag=NDY25_13735;product=CD225/dispanin family protein;protein_id=UUF01046.1;transl_table=11 CP098604.1 Genbank gene 3138727 3140649 . - . ID=gene-NDY25_13740;Name=NDY25_13740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13740 CP098604.1 Protein Homology CDS 3138727 3140649 . - 0 ID=cds-UUF01047.1;Parent=gene-NDY25_13740;Dbxref=NCBI_GP:UUF01047.1;Name=UUF01047.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155949.1;locus_tag=NDY25_13740;product=MFS transporter;protein_id=UUF01047.1;transl_table=11 CP098604.1 Genbank gene 3140778 3141968 . + . ID=gene-NDY25_13745;Name=NDY25_13745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13745 CP098604.1 Protein Homology CDS 3140778 3141968 . + 0 ID=cds-UUF01048.1;Parent=gene-NDY25_13745;Dbxref=NCBI_GP:UUF01048.1;Name=UUF01048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035744.1;locus_tag=NDY25_13745;product=MFS transporter;protein_id=UUF01048.1;transl_table=11 CP098604.1 Genbank gene 3142103 3144316 . - . ID=gene-NDY25_13750;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=NDY25_13750 CP098604.1 Protein Homology CDS 3142103 3144316 . - 0 ID=cds-UUF01049.1;Parent=gene-NDY25_13750;Dbxref=NCBI_GP:UUF01049.1;Name=UUF01049.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155946.1;locus_tag=NDY25_13750;product=YccS family putative transporter;protein_id=UUF01049.1;transl_table=11 CP098604.1 Genbank gene 3144531 3145826 . - . ID=gene-NDY25_13755;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=NDY25_13755 CP098604.1 Protein Homology CDS 3144531 3145826 . - 0 ID=cds-UUF01050.1;Parent=gene-NDY25_13755;Dbxref=NCBI_GP:UUF01050.1;Name=UUF01050.1;Ontology_term=GO:0006189,GO:0009152,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155944.1;locus_tag=NDY25_13755;product=phosphoribosylamine--glycine ligase;protein_id=UUF01050.1;transl_table=11 CP098604.1 Genbank gene 3145952 3147535 . - . ID=gene-NDY25_13760;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=NDY25_13760 CP098604.1 Protein Homology CDS 3145952 3147535 . - 0 ID=cds-UUF01051.1;Parent=gene-NDY25_13760;Dbxref=NCBI_GP:UUF01051.1;Name=UUF01051.1;Ontology_term=GO:0006164,GO:0006189,GO:0003824,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=catalytic activity|0003824||IEA,IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA,'de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302295.1;locus_tag=NDY25_13760;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=UUF01051.1;transl_table=11 CP098604.1 Genbank gene 3147772 3148224 . - . ID=gene-NDY25_13765;Name=NDY25_13765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13765 CP098604.1 Protein Homology CDS 3147772 3148224 . - 0 ID=cds-UUF01052.1;Parent=gene-NDY25_13765;Dbxref=NCBI_GP:UUF01052.1;Name=UUF01052.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023996.2;locus_tag=NDY25_13765;product=DUF3757 domain-containing protein;protein_id=UUF01052.1;transl_table=11 CP098604.1 Genbank gene 3148353 3148739 . - . ID=gene-NDY25_13770;Name=NDY25_13770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13770 CP098604.1 GeneMarkS-2+ CDS 3148353 3148739 . - 0 ID=cds-UUF01053.1;Parent=gene-NDY25_13770;Dbxref=NCBI_GP:UUF01053.1;Name=UUF01053.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13770;product=hypothetical protein;protein_id=UUF01053.1;transl_table=11 CP098604.1 Genbank pseudogene 3148891 3149004 . - . ID=gene-NDY25_13775;Name=NDY25_13775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13775;pseudo=true CP098604.1 Protein Homology CDS 3148891 3149004 . - 0 ID=cds-NDY25_13775;Parent=gene-NDY25_13775;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_13775;product=IS1595 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 3149090 3149361 . - . ID=gene-NDY25_13780;Name=fis;gbkey=Gene;gene=fis;gene_biotype=pseudogene;locus_tag=NDY25_13780;pseudo=true CP098604.1 Protein Homology CDS 3149090 3149361 . - 0 ID=cds-NDY25_13780;Parent=gene-NDY25_13780;Note=frameshifted;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920134.1;locus_tag=NDY25_13780;product=DNA-binding transcriptional regulator Fis;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3150466 3155052 . + . ID=gene-NDY25_13785;Name=NDY25_13785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13785 CP098604.1 Protein Homology CDS 3150466 3155052 . + 0 ID=cds-UUF01054.1;Parent=gene-NDY25_13785;Dbxref=NCBI_GP:UUF01054.1;Name=UUF01054.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_058197395.1;locus_tag=NDY25_13785;product=Ice nucleation protein;protein_id=UUF01054.1;transl_table=11 CP098604.1 Genbank gene 3155400 3155672 . - . ID=gene-NDY25_13790;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=NDY25_13790 CP098604.1 Protein Homology CDS 3155400 3155672 . - 0 ID=cds-UUF01055.1;Parent=gene-NDY25_13790;Dbxref=NCBI_GP:UUF01055.1;Name=UUF01055.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920134.1;locus_tag=NDY25_13790;product=DNA-binding transcriptional regulator Fis;protein_id=UUF01055.1;transl_table=11 CP098604.1 Genbank gene 3155790 3156968 . - . ID=gene-NDY25_13795;Name=NDY25_13795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13795 CP098604.1 Protein Homology CDS 3155790 3156968 . - 0 ID=cds-UUF01056.1;Parent=gene-NDY25_13795;Dbxref=NCBI_GP:UUF01056.1;Name=UUF01056.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920136.1;locus_tag=NDY25_13795;product=DUF3426 domain-containing protein;protein_id=UUF01056.1;transl_table=11 CP098604.1 Genbank gene 3157293 3157670 . - . ID=gene-NDY25_13800;Name=NDY25_13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13800 CP098604.1 Protein Homology CDS 3157293 3157670 . - 0 ID=cds-UUF01057.1;Parent=gene-NDY25_13800;Dbxref=NCBI_GP:UUF01057.1;Name=UUF01057.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997552.1;locus_tag=NDY25_13800;product=helix-turn-helix domain-containing protein;protein_id=UUF01057.1;transl_table=11 CP098604.1 Genbank gene 3157814 3158326 . + . ID=gene-NDY25_13805;Name=NDY25_13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13805 CP098604.1 Protein Homology CDS 3157814 3158326 . + 0 ID=cds-UUF01058.1;Parent=gene-NDY25_13805;Dbxref=NCBI_GP:UUF01058.1;Name=UUF01058.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571864.1;locus_tag=NDY25_13805;product=hypothetical protein;protein_id=UUF01058.1;transl_table=11 CP098604.1 Genbank gene 3158339 3159259 . - . ID=gene-NDY25_13810;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=NDY25_13810 CP098604.1 Protein Homology CDS 3158339 3159259 . - 0 ID=cds-UUF01059.1;Parent=gene-NDY25_13810;Dbxref=NCBI_GP:UUF01059.1;Name=UUF01059.1;Ontology_term=GO:0006464,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451534.1;locus_tag=NDY25_13810;product=50S ribosomal protein L11 methyltransferase;protein_id=UUF01059.1;transl_table=11 CP098604.1 Genbank gene 3159694 3160620 . + . ID=gene-NDY25_13815;Name=NDY25_13815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13815 CP098604.1 Protein Homology CDS 3159694 3160620 . + 0 ID=cds-UUF01060.1;Parent=gene-NDY25_13815;Dbxref=NCBI_GP:UUF01060.1;Name=UUF01060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301597.1;locus_tag=NDY25_13815;product=hypothetical protein;protein_id=UUF01060.1;transl_table=11 CP098604.1 Genbank gene 3160617 3160985 . + . ID=gene-NDY25_13820;Name=NDY25_13820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13820 CP098604.1 Protein Homology CDS 3160617 3160985 . + 0 ID=cds-UUF01061.1;Parent=gene-NDY25_13820;Dbxref=NCBI_GP:UUF01061.1;Name=UUF01061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257468.1;locus_tag=NDY25_13820;product=hypothetical protein;protein_id=UUF01061.1;transl_table=11 CP098604.1 Genbank gene 3161066 3162433 . - . ID=gene-NDY25_13825;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=NDY25_13825 CP098604.1 Protein Homology CDS 3161066 3162433 . - 0 ID=cds-UUF01062.1;Parent=gene-NDY25_13825;Dbxref=NCBI_GP:UUF01062.1;Name=UUF01062.1;Ontology_term=GO:0006633,GO:0003989,GO:0004075,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA,biotin carboxylase activity|0004075||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017911501.1;locus_tag=NDY25_13825;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=UUF01062.1;transl_table=11 CP098604.1 Genbank gene 3162476 3162865 . - . ID=gene-NDY25_13830;Name=NDY25_13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13830 CP098604.1 Protein Homology CDS 3162476 3162865 . - 0 ID=cds-UUF01063.1;Parent=gene-NDY25_13830;Dbxref=NCBI_GP:UUF01063.1;Name=UUF01063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007961982.1;locus_tag=NDY25_13830;product=four helix bundle protein;protein_id=UUF01063.1;transl_table=11 CP098604.1 Genbank gene 3162882 3163367 . - . ID=gene-NDY25_13835;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=NDY25_13835 CP098604.1 Protein Homology CDS 3162882 3163367 . - 0 ID=cds-UUF01064.1;Parent=gene-NDY25_13835;Dbxref=NCBI_GP:UUF01064.1;Name=UUF01064.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155928.1;locus_tag=NDY25_13835;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=UUF01064.1;transl_table=11 CP098604.1 Genbank gene 3163459 3163905 . - . ID=gene-NDY25_13840;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=NDY25_13840 CP098604.1 Protein Homology CDS 3163459 3163905 . - 0 ID=cds-UUF01065.1;Parent=gene-NDY25_13840;Dbxref=NCBI_GP:UUF01065.1;Name=UUF01065.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroQ;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169658.1;locus_tag=NDY25_13840;product=type II 3-dehydroquinate dehydratase;protein_id=UUF01065.1;transl_table=11 CP098604.1 Genbank gene 3164299 3165126 . - . ID=gene-NDY25_13845;Name=NDY25_13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13845 CP098604.1 Protein Homology CDS 3164299 3165126 . - 0 ID=cds-UUF01066.1;Parent=gene-NDY25_13845;Dbxref=NCBI_GP:UUF01066.1;Name=UUF01066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451541.1;locus_tag=NDY25_13845;product=helix-turn-helix transcriptional regulator;protein_id=UUF01066.1;transl_table=11 CP098604.1 Genbank gene 3165227 3166300 . + . ID=gene-NDY25_13850;Name=NDY25_13850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13850 CP098604.1 Protein Homology CDS 3165227 3166300 . + 0 ID=cds-UUF01067.1;Parent=gene-NDY25_13850;Dbxref=NCBI_GP:UUF01067.1;Name=UUF01067.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016228.2;locus_tag=NDY25_13850;product=SDR family oxidoreductase;protein_id=UUF01067.1;transl_table=11 CP098604.1 Genbank gene 3166347 3168689 . - . ID=gene-NDY25_13855;Name=NDY25_13855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13855 CP098604.1 Protein Homology CDS 3166347 3168689 . - 0 ID=cds-UUF01068.1;Parent=gene-NDY25_13855;Dbxref=NCBI_GP:UUF01068.1;Name=UUF01068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346209.1;locus_tag=NDY25_13855;product=protein-disulfide reductase DsbD;protein_id=UUF01068.1;transl_table=11 CP098604.1 Genbank gene 3168695 3169027 . - . ID=gene-NDY25_13860;Name=NDY25_13860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13860 CP098604.1 Protein Homology CDS 3168695 3169027 . - 0 ID=cds-UUF01069.1;Parent=gene-NDY25_13860;Dbxref=NCBI_GP:UUF01069.1;Name=UUF01069.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368153.1;locus_tag=NDY25_13860;product=divalent-cation tolerance protein CutA;protein_id=UUF01069.1;transl_table=11 CP098604.1 Genbank gene 3169429 3171222 . - . ID=gene-NDY25_13865;Name=NDY25_13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13865 CP098604.1 Protein Homology CDS 3169429 3171222 . - 0 ID=cds-UUF01070.1;Parent=gene-NDY25_13865;Dbxref=NCBI_GP:UUF01070.1;Name=UUF01070.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161135.1;locus_tag=NDY25_13865;product=endonuclease;protein_id=UUF01070.1;transl_table=11 CP098604.1 Genbank gene 3171495 3171782 . + . ID=gene-NDY25_13870;Name=NDY25_13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13870 CP098604.1 Protein Homology CDS 3171495 3171782 . + 0 ID=cds-UUF01071.1;Parent=gene-NDY25_13870;Dbxref=NCBI_GP:UUF01071.1;Name=UUF01071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303525.1;locus_tag=NDY25_13870;product=co-chaperone GroES;protein_id=UUF01071.1;transl_table=11 CP098604.1 Genbank gene 3171930 3173573 . + . ID=gene-NDY25_13875;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=NDY25_13875 CP098604.1 Protein Homology CDS 3171930 3173573 . + 0 ID=cds-UUF01072.1;Parent=gene-NDY25_13875;Dbxref=NCBI_GP:UUF01072.1;Name=UUF01072.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0006457,GO:0005515,GO:0016887;gbkey=CDS;gene=groL;go_function=protein binding|0005515||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005411226.1;locus_tag=NDY25_13875;product=chaperonin GroEL;protein_id=UUF01072.1;transl_table=11 CP098604.1 Genbank gene 3173733 3175817 . + . ID=gene-NDY25_13880;Name=NDY25_13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13880 CP098604.1 Protein Homology CDS 3173733 3175817 . + 0 ID=cds-UUF01073.1;Parent=gene-NDY25_13880;Dbxref=NCBI_GP:UUF01073.1;Name=UUF01073.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012403.2;locus_tag=NDY25_13880;product=DEAD/DEAH box helicase;protein_id=UUF01073.1;transl_table=11 CP098604.1 Genbank gene 3175772 3176542 . + . ID=gene-NDY25_13885;Name=NDY25_13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13885 CP098604.1 GeneMarkS-2+ CDS 3175772 3176542 . + 0 ID=cds-UUF01074.1;Parent=gene-NDY25_13885;Dbxref=NCBI_GP:UUF01074.1;Name=UUF01074.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13885;product=hypothetical protein;protein_id=UUF01074.1;transl_table=11 CP098604.1 Genbank gene 3176657 3177943 . + . ID=gene-NDY25_13890;Name=NDY25_13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13890 CP098604.1 Protein Homology CDS 3176657 3177943 . + 0 ID=cds-UUF01075.1;Parent=gene-NDY25_13890;Dbxref=NCBI_GP:UUF01075.1;Name=UUF01075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945186.1;locus_tag=NDY25_13890;product=putative DNA binding domain-containing protein;protein_id=UUF01075.1;transl_table=11 CP098604.1 Genbank gene 3177949 3178707 . + . ID=gene-NDY25_13895;Name=NDY25_13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13895 CP098604.1 Protein Homology CDS 3177949 3178707 . + 0 ID=cds-UUF01076.1;Parent=gene-NDY25_13895;Dbxref=NCBI_GP:UUF01076.1;Name=UUF01076.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013704.2;locus_tag=NDY25_13895;product=site-specific DNA-methyltransferase;protein_id=UUF01076.1;transl_table=11 CP098604.1 Genbank pseudogene 3178910 3179725 . + . ID=gene-NDY25_13900;Name=NDY25_13900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_13900;pseudo=true CP098604.1 Protein Homology CDS 3178910 3179725 . + 0 ID=cds-NDY25_13900;Parent=gene-NDY25_13900;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003470500.1;locus_tag=NDY25_13900;product=site-specific DNA-methyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3179722 3180849 . + . ID=gene-NDY25_13905;Name=NDY25_13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13905 CP098604.1 Protein Homology CDS 3179722 3180849 . + 0 ID=cds-UUF01077.1;Parent=gene-NDY25_13905;Dbxref=NCBI_GP:UUF01077.1;Name=UUF01077.1;Ontology_term=GO:0003677,GO:0005524,GO:0016787;gbkey=CDS;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: protein motif:HMM:NF016724.2;locus_tag=NDY25_13905;product=DEAD/DEAH box helicase family protein;protein_id=UUF01077.1;transl_table=11 CP098604.1 Genbank gene 3180815 3182485 . + . ID=gene-NDY25_13910;Name=NDY25_13910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13910 CP098604.1 GeneMarkS-2+ CDS 3180815 3182485 . + 0 ID=cds-UUF01078.1;Parent=gene-NDY25_13910;Dbxref=NCBI_GP:UUF01078.1;Name=UUF01078.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_13910;product=hypothetical protein;protein_id=UUF01078.1;transl_table=11 CP098604.1 Genbank gene 3182663 3183550 . + . ID=gene-NDY25_13915;Name=NDY25_13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13915 CP098604.1 Protein Homology CDS 3182663 3183550 . + 0 ID=cds-UUF01079.1;Parent=gene-NDY25_13915;Dbxref=NCBI_GP:UUF01079.1;Name=UUF01079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451548.1;locus_tag=NDY25_13915;product=dienelactone hydrolase family protein;protein_id=UUF01079.1;transl_table=11 CP098604.1 Genbank gene 3183773 3185887 . - . ID=gene-NDY25_13920;Name=NDY25_13920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13920 CP098604.1 Protein Homology CDS 3183773 3185887 . - 0 ID=cds-UUF01080.1;Parent=gene-NDY25_13920;Dbxref=NCBI_GP:UUF01080.1;Name=UUF01080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451549.1;locus_tag=NDY25_13920;product=type III secretion system effector protein;protein_id=UUF01080.1;transl_table=11 CP098604.1 Genbank gene 3186318 3189209 . + . ID=gene-NDY25_13925;Name=NDY25_13925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13925 CP098604.1 Protein Homology CDS 3186318 3189209 . + 0 ID=cds-UUF01081.1;Parent=gene-NDY25_13925;Dbxref=NCBI_GP:UUF01081.1;Name=UUF01081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113290.1;locus_tag=NDY25_13925;product=TonB-dependent receptor;protein_id=UUF01081.1;transl_table=11 CP098604.1 Genbank gene 3190007 3191080 . + . ID=gene-NDY25_13930;Name=NDY25_13930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13930 CP098604.1 Protein Homology CDS 3190007 3191080 . + 0 ID=cds-UUF01082.1;Parent=gene-NDY25_13930;Dbxref=NCBI_GP:UUF01082.1;Name=UUF01082.1;Ontology_term=GO:0009423,GO:0003849;gbkey=CDS;go_function=3-deoxy-7-phosphoheptulonate synthase activity|0003849||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089228.1;locus_tag=NDY25_13930;product=3-deoxy-7-phosphoheptulonate synthase;protein_id=UUF01082.1;transl_table=11 CP098604.1 Genbank gene 3191659 3193173 . - . ID=gene-NDY25_13935;Name=NDY25_13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13935 CP098604.1 Protein Homology CDS 3191659 3193173 . - 0 ID=cds-UUF01083.1;Parent=gene-NDY25_13935;Dbxref=NCBI_GP:UUF01083.1;Name=UUF01083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019662193.1;locus_tag=NDY25_13935;product=acetyl-CoA hydrolase/transferase family protein;protein_id=UUF01083.1;transl_table=11 CP098604.1 Genbank gene 3193340 3195517 . + . ID=gene-NDY25_13940;Name=NDY25_13940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13940 CP098604.1 Protein Homology CDS 3193340 3195517 . + 0 ID=cds-UUF01084.1;Parent=gene-NDY25_13940;Dbxref=NCBI_GP:UUF01084.1;Name=UUF01084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155919.1;locus_tag=NDY25_13940;product=hypothetical protein;protein_id=UUF01084.1;transl_table=11 CP098604.1 Genbank gene 3195723 3198143 . + . ID=gene-NDY25_13945;Name=NDY25_13945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13945 CP098604.1 Protein Homology CDS 3195723 3198143 . + 0 ID=cds-UUF01085.1;Parent=gene-NDY25_13945;Dbxref=NCBI_GP:UUF01085.1;Name=UUF01085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160243.1;locus_tag=NDY25_13945;product=hypothetical protein;protein_id=UUF01085.1;transl_table=11 CP098604.1 Genbank gene 3198564 3199073 . + . ID=gene-NDY25_13950;Name=NDY25_13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13950 CP098604.1 Protein Homology CDS 3198564 3199073 . + 0 ID=cds-UUF01086.1;Parent=gene-NDY25_13950;Dbxref=NCBI_GP:UUF01086.1;Name=UUF01086.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038677.1;locus_tag=NDY25_13950;product=sigma-70 family RNA polymerase sigma factor;protein_id=UUF01086.1;transl_table=11 CP098604.1 Genbank gene 3199083 3200132 . + . ID=gene-NDY25_13955;Name=NDY25_13955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13955 CP098604.1 Protein Homology CDS 3199083 3200132 . + 0 ID=cds-UUF01087.1;Parent=gene-NDY25_13955;Dbxref=NCBI_GP:UUF01087.1;Name=UUF01087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450964.1;locus_tag=NDY25_13955;product=FecR domain-containing protein;protein_id=UUF01087.1;transl_table=11 CP098604.1 Genbank gene 3200251 3202773 . + . ID=gene-NDY25_13960;Name=NDY25_13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13960 CP098604.1 Protein Homology CDS 3200251 3202773 . + 0 ID=cds-UUF01088.1;Parent=gene-NDY25_13960;Dbxref=NCBI_GP:UUF01088.1;Name=UUF01088.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509151.1;locus_tag=NDY25_13960;product=TonB-dependent siderophore receptor;protein_id=UUF01088.1;transl_table=11 CP098604.1 Genbank gene 3202814 3204436 . + . ID=gene-NDY25_13965;Name=NDY25_13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13965 CP098604.1 Protein Homology CDS 3202814 3204436 . + 0 ID=cds-UUF01089.1;Parent=gene-NDY25_13965;Dbxref=NCBI_GP:UUF01089.1;Name=UUF01089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902859.1;locus_tag=NDY25_13965;product=PepSY domain-containing protein;protein_id=UUF01089.1;transl_table=11 CP098604.1 Genbank gene 3204433 3204756 . + . ID=gene-NDY25_13970;Name=NDY25_13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13970 CP098604.1 Protein Homology CDS 3204433 3204756 . + 0 ID=cds-UUF01090.1;Parent=gene-NDY25_13970;Dbxref=NCBI_GP:UUF01090.1;Name=UUF01090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902860.1;locus_tag=NDY25_13970;product=hypothetical protein;protein_id=UUF01090.1;transl_table=11 CP098604.1 Genbank gene 3204744 3205091 . + . ID=gene-NDY25_13975;Name=NDY25_13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13975 CP098604.1 Protein Homology CDS 3204744 3205091 . + 0 ID=cds-UUF01091.1;Parent=gene-NDY25_13975;Dbxref=NCBI_GP:UUF01091.1;Name=UUF01091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450960.1;locus_tag=NDY25_13975;product=DUF3325 domain-containing protein;protein_id=UUF01091.1;transl_table=11 CP098604.1 Genbank gene 3205612 3208437 . + . ID=gene-NDY25_13980;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=NDY25_13980 CP098604.1 Protein Homology CDS 3205612 3208437 . + 0 ID=cds-UUF01092.1;Parent=gene-NDY25_13980;Dbxref=NCBI_GP:UUF01092.1;Name=UUF01092.1;Ontology_term=GO:0008882;gbkey=CDS;gene=glnE;go_function=[glutamate-ammonia-ligase] adenylyltransferase activity|0008882||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005929375.1;locus_tag=NDY25_13980;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;protein_id=UUF01092.1;transl_table=11 CP098604.1 Genbank gene 3208546 3208965 . - . ID=gene-NDY25_13985;Name=NDY25_13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13985 CP098604.1 Protein Homology CDS 3208546 3208965 . - 0 ID=cds-UUF01093.1;Parent=gene-NDY25_13985;Dbxref=NCBI_GP:UUF01093.1;Name=UUF01093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509146.1;locus_tag=NDY25_13985;product=cyclophilin-like fold protein;protein_id=UUF01093.1;transl_table=11 CP098604.1 Genbank gene 3209074 3210099 . - . ID=gene-NDY25_13990;Name=NDY25_13990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13990 CP098604.1 Protein Homology CDS 3209074 3210099 . - 0 ID=cds-UUF01094.1;Parent=gene-NDY25_13990;Dbxref=NCBI_GP:UUF01094.1;Name=UUF01094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014402674.1;locus_tag=NDY25_13990;product=alpha/beta hydrolase;protein_id=UUF01094.1;transl_table=11 CP098604.1 Genbank gene 3210588 3211145 . - . ID=gene-NDY25_13995;Name=NDY25_13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_13995 CP098604.1 Protein Homology CDS 3210588 3211145 . - 0 ID=cds-UUF01095.1;Parent=gene-NDY25_13995;Dbxref=NCBI_GP:UUF01095.1;Name=UUF01095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450269.1;locus_tag=NDY25_13995;product=VUT family protein;protein_id=UUF01095.1;transl_table=11 CP098604.1 Genbank gene 3211368 3211871 . - . ID=gene-NDY25_14000;Name=NDY25_14000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14000 CP098604.1 Protein Homology CDS 3211368 3211871 . - 0 ID=cds-UUF01096.1;Parent=gene-NDY25_14000;Dbxref=NCBI_GP:UUF01096.1;Name=UUF01096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450268.1;locus_tag=NDY25_14000;product=hypothetical protein;protein_id=UUF01096.1;transl_table=11 CP098604.1 Genbank gene 3211868 3212680 . - . ID=gene-NDY25_14005;Name=NDY25_14005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14005 CP098604.1 Protein Homology CDS 3211868 3212680 . - 0 ID=cds-UUF04652.1;Parent=gene-NDY25_14005;Dbxref=NCBI_GP:UUF04652.1;Name=UUF04652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303515.1;locus_tag=NDY25_14005;product=DUF2145 domain-containing protein;protein_id=UUF04652.1;transl_table=11 CP098604.1 Genbank gene 3212781 3213728 . - . ID=gene-NDY25_14010;Name=NDY25_14010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14010 CP098604.1 Protein Homology CDS 3212781 3213728 . - 0 ID=cds-UUF04653.1;Parent=gene-NDY25_14010;Dbxref=NCBI_GP:UUF04653.1;Name=UUF04653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038688.1;locus_tag=NDY25_14010;product=mitochondrial fission ELM1 family protein;protein_id=UUF04653.1;transl_table=11 CP098604.1 Genbank pseudogene 3213865 3214457 . + . ID=gene-NDY25_14015;Name=NDY25_14015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14015;pseudo=true CP098604.1 Protein Homology CDS 3213865 3214457 . + 0 ID=cds-NDY25_14015;Parent=gene-NDY25_14015;Note=frameshifted;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914114.1;locus_tag=NDY25_14015;product=malonic semialdehyde reductase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3214549 3215280 . + . ID=gene-NDY25_14020;Name=NDY25_14020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14020 CP098604.1 Protein Homology CDS 3214549 3215280 . + 0 ID=cds-UUF01097.1;Parent=gene-NDY25_14020;Dbxref=NCBI_GP:UUF01097.1;Name=UUF01097.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450264.1;locus_tag=NDY25_14020;product=YceI family protein;protein_id=UUF01097.1;transl_table=11 CP098604.1 Genbank gene 3215560 3215727 . + . ID=gene-NDY25_14025;Name=NDY25_14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14025 CP098604.1 GeneMarkS-2+ CDS 3215560 3215727 . + 0 ID=cds-UUF01098.1;Parent=gene-NDY25_14025;Dbxref=NCBI_GP:UUF01098.1;Name=UUF01098.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14025;product=hypothetical protein;protein_id=UUF01098.1;transl_table=11 CP098604.1 Genbank gene 3215853 3216641 . - . ID=gene-NDY25_14030;Name=NDY25_14030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14030 CP098604.1 Protein Homology CDS 3215853 3216641 . - 0 ID=cds-UUF01099.1;Parent=gene-NDY25_14030;Dbxref=NCBI_GP:UUF01099.1;Name=UUF01099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452902.1;locus_tag=NDY25_14030;product=siderophore-interacting protein;protein_id=UUF01099.1;transl_table=11 CP098604.1 Genbank gene 3217168 3217713 . - . ID=gene-NDY25_14035;Name=NDY25_14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14035 CP098604.1 Protein Homology CDS 3217168 3217713 . - 0 ID=cds-UUF01100.1;Parent=gene-NDY25_14035;Dbxref=NCBI_GP:UUF01100.1;Name=UUF01100.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089242.1;locus_tag=NDY25_14035;product=PadR family transcriptional regulator;protein_id=UUF01100.1;transl_table=11 CP098604.1 Genbank gene 3218083 3219729 . + . ID=gene-NDY25_14040;Name=mdcA;gbkey=Gene;gene=mdcA;gene_biotype=protein_coding;locus_tag=NDY25_14040 CP098604.1 Protein Homology CDS 3218083 3219729 . + 0 ID=cds-UUF01101.1;Parent=gene-NDY25_14040;Dbxref=NCBI_GP:UUF01101.1;Name=UUF01101.1;Ontology_term=GO:0006810,GO:0015451;gbkey=CDS;gene=mdcA;go_function=decarboxylation-driven active transmembrane transporter activity|0015451||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963345.1;locus_tag=NDY25_14040;product=malonate decarboxylase subunit alpha;protein_id=UUF01101.1;transl_table=11 CP098604.1 Genbank gene 3219739 3220056 . + . ID=gene-NDY25_14045;Name=mdcC;gbkey=Gene;gene=mdcC;gene_biotype=protein_coding;locus_tag=NDY25_14045 CP098604.1 Protein Homology CDS 3219739 3220056 . + 0 ID=cds-UUF01102.1;Parent=gene-NDY25_14045;Dbxref=NCBI_GP:UUF01102.1;Name=UUF01102.1;gbkey=CDS;gene=mdcC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038694.1;locus_tag=NDY25_14045;product=malonate decarboxylase acyl carrier protein;protein_id=UUF01102.1;transl_table=11 CP098604.1 Genbank gene 3220288 3221190 . + . ID=gene-NDY25_14050;Name=NDY25_14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14050 CP098604.1 Protein Homology CDS 3220288 3221190 . + 0 ID=cds-UUF04654.1;Parent=gene-NDY25_14050;Dbxref=NCBI_GP:UUF04654.1;Name=UUF04654.1;Ontology_term=GO:0006633,GO:0044262,GO:0003989,GO:0016831,GO:0009317;gbkey=CDS;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA,carboxy-lyase activity|0016831||IEA;go_process=fatty acid biosynthetic process|0006633||IEA,cellular carbohydrate metabolic process|0044262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174364.1;locus_tag=NDY25_14050;product=biotin-independent malonate decarboxylase subunit beta;protein_id=UUF04654.1;transl_table=11 CP098604.1 Genbank gene 3221181 3221885 . + . ID=gene-NDY25_14055;Name=mdcE;gbkey=Gene;gene=mdcE;gene_biotype=protein_coding;locus_tag=NDY25_14055 CP098604.1 Protein Homology CDS 3221181 3221885 . + 0 ID=cds-UUF01103.1;Parent=gene-NDY25_14055;Dbxref=NCBI_GP:UUF01103.1;Name=UUF01103.1;Ontology_term=GO:0044262;gbkey=CDS;gene=mdcE;go_process=cellular carbohydrate metabolic process|0044262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962423.1;locus_tag=NDY25_14055;product=biotin-independent malonate decarboxylase subunit gamma;protein_id=UUF01103.1;transl_table=11 CP098604.1 Genbank gene 3221888 3222532 . + . ID=gene-NDY25_14060;Name=mdcG;gbkey=Gene;gene=mdcG;gene_biotype=protein_coding;locus_tag=NDY25_14060 CP098604.1 Protein Homology CDS 3221888 3222532 . + 0 ID=cds-UUF01104.1;Parent=gene-NDY25_14060;Dbxref=NCBI_GP:UUF01104.1;Name=UUF01104.1;Ontology_term=GO:0051191;gbkey=CDS;gene=mdcG;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917376.1;locus_tag=NDY25_14060;product=malonate decarboxylase holo-[acyl-carrier-protein] synthase;protein_id=UUF01104.1;transl_table=11 CP098604.1 Genbank gene 3222640 3223464 . + . ID=gene-NDY25_14065;Name=mdcB;gbkey=Gene;gene=mdcB;gene_biotype=protein_coding;locus_tag=NDY25_14065 CP098604.1 Protein Homology CDS 3222640 3223464 . + 0 ID=cds-UUF04655.1;Parent=gene-NDY25_14065;Dbxref=NCBI_GP:UUF04655.1;Name=UUF04655.1;Ontology_term=GO:0019361,GO:0046917;gbkey=CDS;gene=mdcB;go_function=triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process|0019361||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002805840.1;locus_tag=NDY25_14065;product=triphosphoribosyl-dephospho-CoA synthase MdcB;protein_id=UUF04655.1;transl_table=11 CP098604.1 Genbank gene 3223461 3224381 . + . ID=gene-NDY25_14070;Name=mdcH;gbkey=Gene;gene=mdcH;gene_biotype=protein_coding;locus_tag=NDY25_14070 CP098604.1 Protein Homology CDS 3223461 3224381 . + 0 ID=cds-UUF01105.1;Parent=gene-NDY25_14070;Dbxref=NCBI_GP:UUF01105.1;Name=UUF01105.1;Ontology_term=GO:0016740;gbkey=CDS;gene=mdcH;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962436.1;locus_tag=NDY25_14070;product=malonate decarboxylase subunit epsilon;protein_id=UUF01105.1;transl_table=11 CP098604.1 Genbank gene 3224540 3225895 . + . ID=gene-NDY25_14075;Name=NDY25_14075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14075 CP098604.1 Protein Homology CDS 3224540 3225895 . + 0 ID=cds-UUF01106.1;Parent=gene-NDY25_14075;Dbxref=NCBI_GP:UUF01106.1;Name=UUF01106.1;Ontology_term=GO:0055085,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010379550.1;locus_tag=NDY25_14075;product=SLC13 family permease;protein_id=UUF01106.1;transl_table=11 CP098604.1 Genbank gene 3225975 3226694 . + . ID=gene-NDY25_14080;Name=NDY25_14080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14080 CP098604.1 Protein Homology CDS 3225975 3226694 . + 0 ID=cds-UUF01107.1;Parent=gene-NDY25_14080;Dbxref=NCBI_GP:UUF01107.1;Name=UUF01107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155895.1;locus_tag=NDY25_14080;product=GntR family transcriptional regulator;protein_id=UUF01107.1;transl_table=11 CP098604.1 Genbank gene 3226883 3227506 . - . ID=gene-NDY25_14085;Name=NDY25_14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14085 CP098604.1 Protein Homology CDS 3226883 3227506 . - 0 ID=cds-UUF01108.1;Parent=gene-NDY25_14085;Dbxref=NCBI_GP:UUF01108.1;Name=UUF01108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155893.1;locus_tag=NDY25_14085;product=HAD hydrolase-like protein;protein_id=UUF01108.1;transl_table=11 CP098604.1 Genbank gene 3227665 3227742 . + . ID=gene-NDY25_14090;Name=NDY25_14090;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_14090 CP098604.1 cmsearch ncRNA 3227665 3227742 . + . ID=rna-NDY25_14090;Parent=gene-NDY25_14090;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_14090;product=sX9 sRNA CP098604.1 cmsearch exon 3227665 3227742 . + . ID=exon-NDY25_14090-1;Parent=rna-NDY25_14090;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_14090;product=sX9 sRNA CP098604.1 Genbank gene 3227747 3228166 . - . ID=gene-NDY25_14095;Name=NDY25_14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14095 CP098604.1 Protein Homology CDS 3227747 3228166 . - 0 ID=cds-UUF01109.1;Parent=gene-NDY25_14095;Dbxref=NCBI_GP:UUF01109.1;Name=UUF01109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483275.1;locus_tag=NDY25_14095;product=STAS domain-containing protein;protein_id=UUF01109.1;transl_table=11 CP098604.1 Genbank gene 3228163 3228594 . - . ID=gene-NDY25_14100;Name=NDY25_14100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14100 CP098604.1 Protein Homology CDS 3228163 3228594 . - 0 ID=cds-UUF01110.1;Parent=gene-NDY25_14100;Dbxref=NCBI_GP:UUF01110.1;Name=UUF01110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917392.1;locus_tag=NDY25_14100;product=ATP-binding protein;protein_id=UUF01110.1;transl_table=11 CP098604.1 Genbank gene 3228591 3230525 . - . ID=gene-NDY25_14105;Name=NDY25_14105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14105 CP098604.1 Protein Homology CDS 3228591 3230525 . - 0 ID=cds-UUF04656.1;Parent=gene-NDY25_14105;Dbxref=NCBI_GP:UUF04656.1;Name=UUF04656.1;Ontology_term=GO:0016791;gbkey=CDS;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483280.1;locus_tag=NDY25_14105;product=SpoIIE family protein phosphatase;protein_id=UUF04656.1;transl_table=11 CP098604.1 Genbank gene 3230809 3231408 . + . ID=gene-NDY25_14110;Name=NDY25_14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14110 CP098604.1 Protein Homology CDS 3230809 3231408 . + 0 ID=cds-UUF01111.1;Parent=gene-NDY25_14110;Dbxref=NCBI_GP:UUF01111.1;Name=UUF01111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155889.1;locus_tag=NDY25_14110;product=hypothetical protein;protein_id=UUF01111.1;transl_table=11 CP098604.1 Genbank gene 3231405 3232727 . + . ID=gene-NDY25_14115;Name=NDY25_14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14115 CP098604.1 Protein Homology CDS 3231405 3232727 . + 0 ID=cds-UUF01112.1;Parent=gene-NDY25_14115;Dbxref=NCBI_GP:UUF01112.1;Name=UUF01112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452507.1;locus_tag=NDY25_14115;product=DUF2974 domain-containing protein;protein_id=UUF01112.1;transl_table=11 CP098604.1 Genbank gene 3233349 3234350 . + . ID=gene-NDY25_14120;Name=NDY25_14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14120 CP098604.1 Protein Homology CDS 3233349 3234350 . + 0 ID=cds-UUF01113.1;Parent=gene-NDY25_14120;Dbxref=NCBI_GP:UUF01113.1;Name=UUF01113.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962641.1;locus_tag=NDY25_14120;product=arabinogalactan endo-1%2C4-beta-galactosidase;protein_id=UUF01113.1;transl_table=11 CP098604.1 Genbank gene 3234718 3237405 . + . ID=gene-NDY25_14125;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=NDY25_14125 CP098604.1 Protein Homology CDS 3234718 3237405 . + 0 ID=cds-UUF01114.1;Parent=gene-NDY25_14125;Dbxref=NCBI_GP:UUF01114.1;Name=UUF01114.1;Ontology_term=GO:0006086,GO:0004738,GO:0045250;gbkey=CDS;gene=aceE;go_component=cytosolic pyruvate dehydrogenase complex|0045250||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660853.1;locus_tag=NDY25_14125;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=UUF01114.1;transl_table=11 CP098604.1 Genbank gene 3238112 3239041 . + . ID=gene-NDY25_14130;Name=NDY25_14130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14130 CP098604.1 Protein Homology CDS 3238112 3239041 . + 0 ID=cds-UUF01115.1;Parent=gene-NDY25_14130;Dbxref=NCBI_GP:UUF01115.1;Name=UUF01115.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024700.2;locus_tag=NDY25_14130;product=AAA family ATPase;protein_id=UUF01115.1;transl_table=11 CP098604.1 Genbank gene 3239022 3239576 . + . ID=gene-NDY25_14135;Name=NDY25_14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14135 CP098604.1 GeneMarkS-2+ CDS 3239022 3239576 . + 0 ID=cds-UUF01116.1;Parent=gene-NDY25_14135;Dbxref=NCBI_GP:UUF01116.1;Name=UUF01116.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14135;product=hypothetical protein;protein_id=UUF01116.1;transl_table=11 CP098604.1 Genbank gene 3240668 3241045 . - . ID=gene-NDY25_14140;Name=NDY25_14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14140 CP098604.1 Protein Homology CDS 3240668 3241045 . - 0 ID=cds-UUF01117.1;Parent=gene-NDY25_14140;Dbxref=NCBI_GP:UUF01117.1;Name=UUF01117.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013921.2;locus_tag=NDY25_14140;product=transposase;protein_id=UUF01117.1;transl_table=11 CP098604.1 Genbank gene 3241507 3242019 . - . ID=gene-NDY25_14145;Name=NDY25_14145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14145 CP098604.1 GeneMarkS-2+ CDS 3241507 3242019 . - 0 ID=cds-UUF01118.1;Parent=gene-NDY25_14145;Dbxref=NCBI_GP:UUF01118.1;Name=UUF01118.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14145;product=hypothetical protein;protein_id=UUF01118.1;transl_table=11 CP098604.1 Genbank gene 3242278 3243342 . - . ID=gene-NDY25_14150;Name=NDY25_14150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14150 CP098604.1 Protein Homology CDS 3242278 3243342 . - 0 ID=cds-UUF04657.1;Parent=gene-NDY25_14150;Dbxref=NCBI_GP:UUF04657.1;Name=UUF04657.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: protein motif:HMM:NF033516.0;locus_tag=NDY25_14150;product=IS3 family transposase;protein_id=UUF04657.1;transl_table=11 CP098604.1 Genbank gene 3243595 3243783 . - . ID=gene-NDY25_14155;Name=NDY25_14155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14155 CP098604.1 Protein Homology CDS 3243595 3243783 . - 0 ID=cds-UUF04658.1;Parent=gene-NDY25_14155;Dbxref=NCBI_GP:UUF04658.1;Name=UUF04658.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013921.2;locus_tag=NDY25_14155;product=hypothetical protein;protein_id=UUF04658.1;transl_table=11 CP098604.1 Genbank gene 3243940 3244332 . - . ID=gene-NDY25_14160;Name=NDY25_14160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14160 CP098604.1 Protein Homology CDS 3243940 3244332 . - 0 ID=cds-UUF01119.1;Parent=gene-NDY25_14160;Dbxref=NCBI_GP:UUF01119.1;Name=UUF01119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449354.1;locus_tag=NDY25_14160;product=hypothetical protein;protein_id=UUF01119.1;transl_table=11 CP098604.1 Genbank pseudogene 3244431 3244877 . - . ID=gene-NDY25_14165;Name=NDY25_14165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14165;pseudo=true CP098604.1 Protein Homology CDS 3244431 3244877 . - 0 ID=cds-NDY25_14165;Parent=gene-NDY25_14165;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158119.1;locus_tag=NDY25_14165;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3246902 3247333 . - . ID=gene-NDY25_14170;Name=NDY25_14170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14170 CP098604.1 GeneMarkS-2+ CDS 3246902 3247333 . - 0 ID=cds-UUF01120.1;Parent=gene-NDY25_14170;Dbxref=NCBI_GP:UUF01120.1;Name=UUF01120.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14170;product=hypothetical protein;protein_id=UUF01120.1;transl_table=11 CP098604.1 Genbank gene 3247499 3248224 . - . ID=gene-NDY25_14175;Name=NDY25_14175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14175 CP098604.1 Protein Homology CDS 3247499 3248224 . - 0 ID=cds-UUF01121.1;Parent=gene-NDY25_14175;Dbxref=NCBI_GP:UUF01121.1;Name=UUF01121.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806373.1;locus_tag=NDY25_14175;product=hypothetical protein;protein_id=UUF01121.1;transl_table=11 CP098604.1 Genbank gene 3248604 3248876 . + . ID=gene-NDY25_14180;Name=NDY25_14180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14180 CP098604.1 Protein Homology CDS 3248604 3248876 . + 0 ID=cds-UUF01122.1;Parent=gene-NDY25_14180;Dbxref=NCBI_GP:UUF01122.1;Name=UUF01122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437267.1;locus_tag=NDY25_14180;product=hypothetical protein;protein_id=UUF01122.1;transl_table=11 CP098604.1 Genbank gene 3248873 3249289 . + . ID=gene-NDY25_14185;Name=NDY25_14185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14185 CP098604.1 Protein Homology CDS 3248873 3249289 . + 0 ID=cds-UUF01123.1;Parent=gene-NDY25_14185;Dbxref=NCBI_GP:UUF01123.1;Name=UUF01123.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507646.1;locus_tag=NDY25_14185;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF01123.1;transl_table=11 CP098604.1 Genbank gene 3249376 3250014 . + . ID=gene-NDY25_14190;Name=NDY25_14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14190 CP098604.1 Protein Homology CDS 3249376 3250014 . + 0 ID=cds-UUF01124.1;Parent=gene-NDY25_14190;Dbxref=NCBI_GP:UUF01124.1;Name=UUF01124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117375.1;locus_tag=NDY25_14190;product=hypothetical protein;protein_id=UUF01124.1;transl_table=11 CP098604.1 Genbank gene 3250029 3250376 . + . ID=gene-NDY25_14195;Name=NDY25_14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14195 CP098604.1 Protein Homology CDS 3250029 3250376 . + 0 ID=cds-UUF01125.1;Parent=gene-NDY25_14195;Dbxref=NCBI_GP:UUF01125.1;Name=UUF01125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451552.1;locus_tag=NDY25_14195;product=hypothetical protein;protein_id=UUF01125.1;transl_table=11 CP098604.1 Genbank gene 3250396 3251505 . + . ID=gene-NDY25_14200;Name=NDY25_14200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14200 CP098604.1 Protein Homology CDS 3250396 3251505 . + 0 ID=cds-UUF01126.1;Parent=gene-NDY25_14200;Dbxref=NCBI_GP:UUF01126.1;Name=UUF01126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451555.1;locus_tag=NDY25_14200;product=hypothetical protein;protein_id=UUF01126.1;transl_table=11 CP098604.1 Genbank gene 3251614 3251904 . + . ID=gene-NDY25_14205;Name=NDY25_14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14205 CP098604.1 Protein Homology CDS 3251614 3251904 . + 0 ID=cds-UUF01127.1;Parent=gene-NDY25_14205;Dbxref=NCBI_GP:UUF01127.1;Name=UUF01127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507646.1;locus_tag=NDY25_14205;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF01127.1;transl_table=11 CP098604.1 Genbank gene 3252095 3252493 . + . ID=gene-NDY25_14210;Name=NDY25_14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14210 CP098604.1 GeneMarkS-2+ CDS 3252095 3252493 . + 0 ID=cds-UUF01128.1;Parent=gene-NDY25_14210;Dbxref=NCBI_GP:UUF01128.1;Name=UUF01128.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14210;product=hypothetical protein;protein_id=UUF01128.1;transl_table=11 CP098604.1 Genbank gene 3252622 3252828 . + . ID=gene-NDY25_14215;Name=NDY25_14215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14215 CP098604.1 GeneMarkS-2+ CDS 3252622 3252828 . + 0 ID=cds-UUF01129.1;Parent=gene-NDY25_14215;Dbxref=NCBI_GP:UUF01129.1;Name=UUF01129.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14215;product=hypothetical protein;protein_id=UUF01129.1;transl_table=11 CP098604.1 Genbank gene 3252849 3253475 . + . ID=gene-NDY25_14220;Name=NDY25_14220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14220 CP098604.1 GeneMarkS-2+ CDS 3252849 3253475 . + 0 ID=cds-UUF01130.1;Parent=gene-NDY25_14220;Dbxref=NCBI_GP:UUF01130.1;Name=UUF01130.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14220;product=hypothetical protein;protein_id=UUF01130.1;transl_table=11 CP098604.1 Genbank gene 3253489 3254451 . - . ID=gene-NDY25_14225;Name=NDY25_14225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14225 CP098604.1 Protein Homology CDS 3253489 3254451 . - 0 ID=cds-UUF01131.1;Parent=gene-NDY25_14225;Dbxref=NCBI_GP:UUF01131.1;Name=UUF01131.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_14225;product=IS1595 family transposase;protein_id=UUF01131.1;transl_table=11 CP098604.1 Genbank gene 3254703 3255683 . + . ID=gene-NDY25_14230;Name=NDY25_14230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14230 CP098604.1 Protein Homology CDS 3254703 3255683 . + 0 ID=cds-UUF01132.1;Parent=gene-NDY25_14230;Dbxref=NCBI_GP:UUF01132.1;Name=UUF01132.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_14230;product=IS5 family transposase;protein_id=UUF01132.1;transl_table=11 CP098604.1 Genbank gene 3255921 3256073 . + . ID=gene-NDY25_14235;Name=NDY25_14235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14235 CP098604.1 Protein Homology CDS 3255921 3256073 . + 0 ID=cds-UUF01133.1;Parent=gene-NDY25_14235;Dbxref=NCBI_GP:UUF01133.1;Name=UUF01133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992949.1;locus_tag=NDY25_14235;product=hypothetical protein;protein_id=UUF01133.1;transl_table=11 CP098604.1 Genbank gene 3256315 3257295 . - . ID=gene-NDY25_14240;Name=NDY25_14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14240 CP098604.1 Protein Homology CDS 3256315 3257295 . - 0 ID=cds-UUF01134.1;Parent=gene-NDY25_14240;Dbxref=NCBI_GP:UUF01134.1;Name=UUF01134.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_14240;product=IS5 family transposase;protein_id=UUF01134.1;transl_table=11 CP098604.1 Genbank gene 3257359 3258186 . - . ID=gene-NDY25_14245;Name=NDY25_14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14245 CP098604.1 GeneMarkS-2+ CDS 3257359 3258186 . - 0 ID=cds-UUF01135.1;Parent=gene-NDY25_14245;Dbxref=NCBI_GP:UUF01135.1;Name=UUF01135.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14245;product=hypothetical protein;protein_id=UUF01135.1;transl_table=11 CP098604.1 Genbank gene 3258249 3259012 . + . ID=gene-NDY25_14250;Name=NDY25_14250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14250 CP098604.1 Protein Homology CDS 3258249 3258564 . + 0 ID=cds-UUF04659.1;Parent=gene-NDY25_14250;Dbxref=NCBI_GP:UUF04659.1;Name=UUF04659.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_14250;product=IS5 family transposase;protein_id=UUF04659.1;transl_table=11 CP098604.1 Protein Homology CDS 3258564 3259012 . + 2 ID=cds-UUF04659.1;Parent=gene-NDY25_14250;Dbxref=NCBI_GP:UUF04659.1;Name=UUF04659.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_14250;product=IS5 family transposase;protein_id=UUF04659.1;transl_table=11 CP098604.1 Genbank gene 3259085 3259345 . - . ID=gene-NDY25_14255;Name=NDY25_14255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14255 CP098604.1 Protein Homology CDS 3259085 3259345 . - 0 ID=cds-UUF01136.1;Parent=gene-NDY25_14255;Dbxref=NCBI_GP:UUF01136.1;Name=UUF01136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452338.1;locus_tag=NDY25_14255;product=helix-turn-helix domain-containing protein;protein_id=UUF01136.1;transl_table=11 CP098604.1 Genbank gene 3259785 3262232 . + . ID=gene-NDY25_14260;Name=NDY25_14260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14260 CP098604.1 Protein Homology CDS 3259785 3262232 . + 0 ID=cds-UUF01137.1;Parent=gene-NDY25_14260;Dbxref=NCBI_GP:UUF01137.1;Name=UUF01137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452337.1;locus_tag=NDY25_14260;product=TonB-dependent receptor;protein_id=UUF01137.1;transl_table=11 CP098604.1 Genbank gene 3262302 3264383 . + . ID=gene-NDY25_14265;Name=NDY25_14265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14265 CP098604.1 Protein Homology CDS 3262302 3264383 . + 0 ID=cds-UUF01138.1;Parent=gene-NDY25_14265;Dbxref=NCBI_GP:UUF01138.1;Name=UUF01138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452336.1;locus_tag=NDY25_14265;product=Atxe2 family lasso peptide isopeptidase;protein_id=UUF01138.1;transl_table=11 CP098604.1 Genbank gene 3264455 3266188 . - . ID=gene-NDY25_14270;Name=NDY25_14270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14270 CP098604.1 Protein Homology CDS 3264455 3266188 . - 0 ID=cds-UUF01139.1;Parent=gene-NDY25_14270;Dbxref=NCBI_GP:UUF01139.1;Name=UUF01139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903882.1;locus_tag=NDY25_14270;product=lasso peptide isopeptide bond-forming cyclase;protein_id=UUF01139.1;transl_table=11 CP098604.1 Genbank gene 3266188 3266862 . - . ID=gene-NDY25_14275;Name=NDY25_14275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14275 CP098604.1 Protein Homology CDS 3266188 3266862 . - 0 ID=cds-UUF01140.1;Parent=gene-NDY25_14275;Dbxref=NCBI_GP:UUF01140.1;Name=UUF01140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452334.1;locus_tag=NDY25_14275;product=lasso peptide biosynthesis B2 protein;protein_id=UUF01140.1;transl_table=11 CP098604.1 Genbank gene 3266973 3267119 . - . ID=gene-NDY25_14280;Name=NDY25_14280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14280 CP098604.1 Protein Homology CDS 3266973 3267119 . - 0 ID=cds-UUF01141.1;Parent=gene-NDY25_14280;Dbxref=NCBI_GP:UUF01141.1;Name=UUF01141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903880.1;locus_tag=NDY25_14280;product=benenodin family lasso peptide;protein_id=UUF01141.1;transl_table=11 CP098604.1 Genbank gene 3267168 3267308 . - . ID=gene-NDY25_14285;Name=NDY25_14285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14285 CP098604.1 Protein Homology CDS 3267168 3267308 . - 0 ID=cds-UUF01142.1;Parent=gene-NDY25_14285;Dbxref=NCBI_GP:UUF01142.1;Name=UUF01142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903879.1;locus_tag=NDY25_14285;product=lasso peptide xanthomonin 1;protein_id=UUF01142.1;transl_table=11 CP098604.1 Genbank gene 3267476 3268105 . - . ID=gene-NDY25_14290;Name=NDY25_14290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14290 CP098604.1 Protein Homology CDS 3267476 3268105 . - 0 ID=cds-UUF01143.1;Parent=gene-NDY25_14290;Dbxref=NCBI_GP:UUF01143.1;Name=UUF01143.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452331.1;locus_tag=NDY25_14290;product=GntR family transcriptional regulator;protein_id=UUF01143.1;transl_table=11 CP098604.1 Genbank gene 3268298 3269884 . - . ID=gene-NDY25_14295;Name=NDY25_14295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14295 CP098604.1 Protein Homology CDS 3268298 3269884 . - 0 ID=cds-UUF01144.1;Parent=gene-NDY25_14295;Dbxref=NCBI_GP:UUF01144.1;Name=UUF01144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923743.1;locus_tag=NDY25_14295;product=SDR family oxidoreductase;protein_id=UUF01144.1;transl_table=11 CP098604.1 Genbank gene 3270265 3270933 . + . ID=gene-NDY25_14300;Name=NDY25_14300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14300 CP098604.1 GeneMarkS-2+ CDS 3270265 3270933 . + 0 ID=cds-UUF01145.1;Parent=gene-NDY25_14300;Dbxref=NCBI_GP:UUF01145.1;Name=UUF01145.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14300;product=hypothetical protein;protein_id=UUF01145.1;transl_table=11 CP098604.1 Genbank gene 3270935 3271909 . + . ID=gene-NDY25_14305;Name=NDY25_14305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14305 CP098604.1 Protein Homology CDS 3270935 3271909 . + 0 ID=cds-UUF01146.1;Parent=gene-NDY25_14305;Dbxref=NCBI_GP:UUF01146.1;Name=UUF01146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037069.1;locus_tag=NDY25_14305;product=hypothetical protein;protein_id=UUF01146.1;transl_table=11 CP098604.1 Genbank gene 3272134 3273108 . + . ID=gene-NDY25_14310;Name=NDY25_14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14310 CP098604.1 Protein Homology CDS 3272134 3273108 . + 0 ID=cds-UUF01147.1;Parent=gene-NDY25_14310;Dbxref=NCBI_GP:UUF01147.1;Name=UUF01147.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089267.1;locus_tag=NDY25_14310;product=glutathione S-transferase family protein;protein_id=UUF01147.1;transl_table=11 CP098604.1 Genbank gene 3273198 3273659 . - . ID=gene-NDY25_14315;Name=NDY25_14315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14315 CP098604.1 Protein Homology CDS 3273198 3273659 . - 0 ID=cds-UUF01148.1;Parent=gene-NDY25_14315;Dbxref=NCBI_GP:UUF01148.1;Name=UUF01148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972686.1;locus_tag=NDY25_14315;product=DUF4126 family protein;protein_id=UUF01148.1;transl_table=11 CP098604.1 Genbank gene 3273981 3274910 . - . ID=gene-NDY25_14320;Name=NDY25_14320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14320 CP098604.1 Protein Homology CDS 3273981 3274910 . - 0 ID=cds-UUF01149.1;Parent=gene-NDY25_14320;Dbxref=NCBI_GP:UUF01149.1;Name=UUF01149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992961.1;locus_tag=NDY25_14320;product=CPBP family intramembrane metalloprotease;protein_id=UUF01149.1;transl_table=11 CP098604.1 Genbank gene 3274935 3275420 . - . ID=gene-NDY25_14325;Name=NDY25_14325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14325 CP098604.1 Protein Homology CDS 3274935 3275420 . - 0 ID=cds-UUF01150.1;Parent=gene-NDY25_14325;Dbxref=NCBI_GP:UUF01150.1;Name=UUF01150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437281.1;locus_tag=NDY25_14325;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=UUF01150.1;transl_table=11 CP098604.1 Genbank pseudogene 3275506 3275616 . - . ID=gene-NDY25_14330;Name=NDY25_14330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14330;pseudo=true CP098604.1 Protein Homology CDS 3275506 3275616 . - 0 ID=cds-NDY25_14330;Parent=gene-NDY25_14330;Note=incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944765.1;locus_tag=NDY25_14330;product=alpha/beta hydrolase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3275767 3276102 . + . ID=gene-NDY25_14335;Name=NDY25_14335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14335 CP098604.1 Protein Homology CDS 3275767 3276102 . + 0 ID=cds-UUF01151.1;Parent=gene-NDY25_14335;Dbxref=NCBI_GP:UUF01151.1;Name=UUF01151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509089.1;locus_tag=NDY25_14335;product=DUF3817 domain-containing protein;protein_id=UUF01151.1;transl_table=11 CP098604.1 Genbank gene 3276253 3278223 . + . ID=gene-NDY25_14340;Name=NDY25_14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14340 CP098604.1 Protein Homology CDS 3276253 3278223 . + 0 ID=cds-UUF01152.1;Parent=gene-NDY25_14340;Dbxref=NCBI_GP:UUF01152.1;Name=UUF01152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452322.1;locus_tag=NDY25_14340;product=S9 family peptidase;protein_id=UUF01152.1;transl_table=11 CP098604.1 Genbank gene 3278478 3280802 . - . ID=gene-NDY25_14345;Name=NDY25_14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14345 CP098604.1 Protein Homology CDS 3278478 3280802 . - 0 ID=cds-UUF01153.1;Parent=gene-NDY25_14345;Dbxref=NCBI_GP:UUF01153.1;Name=UUF01153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117187.1;locus_tag=NDY25_14345;product=S9 family peptidase;protein_id=UUF01153.1;transl_table=11 CP098604.1 Genbank gene 3280978 3282069 . - . ID=gene-NDY25_14350;Name=NDY25_14350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14350 CP098604.1 Protein Homology CDS 3280978 3282069 . - 0 ID=cds-UUF01154.1;Parent=gene-NDY25_14350;Dbxref=NCBI_GP:UUF01154.1;Name=UUF01154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915468.1;locus_tag=NDY25_14350;product=DUF1615 domain-containing protein;protein_id=UUF01154.1;transl_table=11 CP098604.1 Genbank gene 3282462 3284366 . + . ID=gene-NDY25_14355;Name=NDY25_14355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14355 CP098604.1 Protein Homology CDS 3282462 3284366 . + 0 ID=cds-UUF01155.1;Parent=gene-NDY25_14355;Dbxref=NCBI_GP:UUF01155.1;Name=UUF01155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923732.1;locus_tag=NDY25_14355;product=GGDEF domain-containing protein;protein_id=UUF01155.1;transl_table=11 CP098604.1 Genbank gene 3284604 3285149 . - . ID=gene-NDY25_14360;Name=NDY25_14360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14360 CP098604.1 Protein Homology CDS 3284604 3285149 . - 0 ID=cds-UUF01156.1;Parent=gene-NDY25_14360;Dbxref=NCBI_GP:UUF01156.1;Name=UUF01156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452317.1;locus_tag=NDY25_14360;product=hypothetical protein;protein_id=UUF01156.1;transl_table=11 CP098604.1 Genbank gene 3285500 3285808 . + . ID=gene-NDY25_14365;Name=NDY25_14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14365 CP098604.1 Protein Homology CDS 3285500 3285808 . + 0 ID=cds-UUF01157.1;Parent=gene-NDY25_14365;Dbxref=NCBI_GP:UUF01157.1;Name=UUF01157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452316.1;locus_tag=NDY25_14365;product=hypothetical protein;protein_id=UUF01157.1;transl_table=11 CP098604.1 Genbank gene 3286016 3286567 . - . ID=gene-NDY25_14370;Name=NDY25_14370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14370 CP098604.1 Protein Homology CDS 3286016 3286567 . - 0 ID=cds-UUF04660.1;Parent=gene-NDY25_14370;Dbxref=NCBI_GP:UUF04660.1;Name=UUF04660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448615.1;locus_tag=NDY25_14370;product=hypothetical protein;protein_id=UUF04660.1;transl_table=11 CP098604.1 Genbank gene 3286692 3287543 . - . ID=gene-NDY25_14375;Name=NDY25_14375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14375 CP098604.1 Protein Homology CDS 3286692 3287543 . - 0 ID=cds-UUF01158.1;Parent=gene-NDY25_14375;Dbxref=NCBI_GP:UUF01158.1;Name=UUF01158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089279.1;locus_tag=NDY25_14375;product=SAM-dependent methyltransferase;protein_id=UUF01158.1;transl_table=11 CP098604.1 Genbank gene 3287769 3288644 . + . ID=gene-NDY25_14380;Name=NDY25_14380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14380 CP098604.1 Protein Homology CDS 3287769 3288644 . + 0 ID=cds-UUF01159.1;Parent=gene-NDY25_14380;Dbxref=NCBI_GP:UUF01159.1;Name=UUF01159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159126.1;locus_tag=NDY25_14380;product=DMT family transporter;protein_id=UUF01159.1;transl_table=11 CP098604.1 Genbank gene 3288775 3289569 . - . ID=gene-NDY25_14385;Name=NDY25_14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14385 CP098604.1 Protein Homology CDS 3288775 3289569 . - 0 ID=cds-UUF01160.1;Parent=gene-NDY25_14385;Dbxref=NCBI_GP:UUF01160.1;Name=UUF01160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448612.1;locus_tag=NDY25_14385;product=transporter substrate-binding domain-containing protein;protein_id=UUF01160.1;transl_table=11 CP098604.1 Genbank gene 3289743 3289958 . + . ID=gene-NDY25_14390;Name=NDY25_14390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14390 CP098604.1 Protein Homology CDS 3289743 3289958 . + 0 ID=cds-UUF01161.1;Parent=gene-NDY25_14390;Dbxref=NCBI_GP:UUF01161.1;Name=UUF01161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376103.1;locus_tag=NDY25_14390;product=hypothetical protein;protein_id=UUF01161.1;transl_table=11 CP098604.1 Genbank gene 3290003 3291775 . - . ID=gene-NDY25_14395;Name=NDY25_14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14395 CP098604.1 Protein Homology CDS 3290003 3291775 . - 0 ID=cds-UUF01162.1;Parent=gene-NDY25_14395;Dbxref=NCBI_GP:UUF01162.1;Name=UUF01162.1;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501805.1;locus_tag=NDY25_14395;product=cellulase family glycosylhydrolase;protein_id=UUF01162.1;transl_table=11 CP098604.1 Genbank gene 3292155 3293531 . + . ID=gene-NDY25_14400;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=NDY25_14400 CP098604.1 Protein Homology CDS 3292155 3293531 . + 0 ID=cds-UUF01163.1;Parent=gene-NDY25_14400;Dbxref=NCBI_GP:UUF01163.1;Name=UUF01163.1;Ontology_term=GO:0006865,GO:0055085,GO:0016021;gbkey=CDS;gene=cycA;go_component=integral component of membrane|0016021||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448608.1;locus_tag=NDY25_14400;product=D-serine/D-alanine/glycine transporter;protein_id=UUF01163.1;transl_table=11 CP098604.1 Genbank gene 3293709 3294620 . + . ID=gene-NDY25_14405;Name=NDY25_14405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14405 CP098604.1 Protein Homology CDS 3293709 3294620 . + 0 ID=cds-UUF01164.1;Parent=gene-NDY25_14405;Dbxref=NCBI_GP:UUF01164.1;Name=UUF01164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014501814.1;locus_tag=NDY25_14405;product=magnesium transporter;protein_id=UUF01164.1;transl_table=11 CP098604.1 Genbank gene 3294824 3295519 . - . ID=gene-NDY25_14410;Name=NDY25_14410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14410 CP098604.1 Protein Homology CDS 3294824 3295519 . - 0 ID=cds-UUF01165.1;Parent=gene-NDY25_14410;Dbxref=NCBI_GP:UUF01165.1;Name=UUF01165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448601.1;locus_tag=NDY25_14410;product=AIM24 family protein;protein_id=UUF01165.1;transl_table=11 CP098604.1 Genbank gene 3295812 3296771 . + . ID=gene-NDY25_14415;Name=NDY25_14415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14415 CP098604.1 Protein Homology CDS 3295812 3296771 . + 0 ID=cds-UUF01166.1;Parent=gene-NDY25_14415;Dbxref=NCBI_GP:UUF01166.1;Name=UUF01166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448598.1;locus_tag=NDY25_14415;product=arabinan endo-1%2C5-alpha-L-arabinosidase;protein_id=UUF01166.1;transl_table=11 CP098604.1 Genbank gene 3296919 3298592 . - . ID=gene-NDY25_14420;Name=treA;gbkey=Gene;gene=treA;gene_biotype=protein_coding;locus_tag=NDY25_14420 CP098604.1 Protein Homology CDS 3296919 3298592 . - 0 ID=cds-UUF01167.1;Parent=gene-NDY25_14420;Dbxref=NCBI_GP:UUF01167.1;Name=UUF01167.1;gbkey=CDS;gene=treA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167145.1;locus_tag=NDY25_14420;product=alpha%2Calpha-trehalase TreA;protein_id=UUF01167.1;transl_table=11 CP098604.1 Genbank gene 3299037 3299813 . - . ID=gene-NDY25_14425;Name=NDY25_14425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14425 CP098604.1 Protein Homology CDS 3299037 3299813 . - 0 ID=cds-UUF01168.1;Parent=gene-NDY25_14425;Dbxref=NCBI_GP:UUF01168.1;Name=UUF01168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448594.1;locus_tag=NDY25_14425;product=DUF72 domain-containing protein;protein_id=UUF01168.1;transl_table=11 CP098604.1 Genbank pseudogene 3299921 3300672 . + . ID=gene-NDY25_14430;Name=NDY25_14430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14430;pseudo=true CP098604.1 Protein Homology CDS 3299921 3300672 . + 0 ID=cds-NDY25_14430;Parent=gene-NDY25_14430;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448592.1;locus_tag=NDY25_14430;product=endonuclease;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3300823 3301842 . + . ID=gene-NDY25_14435;Name=NDY25_14435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14435 CP098604.1 Protein Homology CDS 3300823 3301842 . + 0 ID=cds-UUF01169.1;Parent=gene-NDY25_14435;Dbxref=NCBI_GP:UUF01169.1;Name=UUF01169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376082.1;locus_tag=NDY25_14435;product=hypothetical protein;protein_id=UUF01169.1;transl_table=11 CP098604.1 Genbank gene 3302778 3303692 . - . ID=gene-NDY25_14440;Name=NDY25_14440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14440 CP098604.1 Protein Homology CDS 3302778 3303692 . - 0 ID=cds-UUF01170.1;Parent=gene-NDY25_14440;Dbxref=NCBI_GP:UUF01170.1;Name=UUF01170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368328.1;locus_tag=NDY25_14440;product=GAF domain-containing protein;protein_id=UUF01170.1;transl_table=11 CP098604.1 Genbank gene 3303813 3304025 . + . ID=gene-NDY25_14445;Name=NDY25_14445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14445 CP098604.1 GeneMarkS-2+ CDS 3303813 3304025 . + 0 ID=cds-UUF01171.1;Parent=gene-NDY25_14445;Dbxref=NCBI_GP:UUF01171.1;Name=UUF01171.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14445;product=hypothetical protein;protein_id=UUF01171.1;transl_table=11 CP098604.1 Genbank gene 3304170 3307049 . - . ID=gene-NDY25_14450;Name=NDY25_14450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14450 CP098604.1 Protein Homology CDS 3304170 3307049 . - 0 ID=cds-UUF01172.1;Parent=gene-NDY25_14450;Dbxref=NCBI_GP:UUF01172.1;Name=UUF01172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509061.1;locus_tag=NDY25_14450;product=insulinase family protein;protein_id=UUF01172.1;transl_table=11 CP098604.1 Genbank gene 3307212 3309875 . + . ID=gene-NDY25_14455;Name=NDY25_14455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14455 CP098604.1 Protein Homology CDS 3307212 3309875 . + 0 ID=cds-UUF01173.1;Parent=gene-NDY25_14455;Dbxref=NCBI_GP:UUF01173.1;Name=UUF01173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453270.1;locus_tag=NDY25_14455;product=PAS domain S-box protein;protein_id=UUF01173.1;transl_table=11 CP098604.1 Genbank gene 3310673 3312802 . - . ID=gene-NDY25_14460;Name=NDY25_14460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14460 CP098604.1 Protein Homology CDS 3310673 3312802 . - 0 ID=cds-UUF04661.1;Parent=gene-NDY25_14460;Dbxref=NCBI_GP:UUF04661.1;Name=UUF04661.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118448.1;locus_tag=NDY25_14460;product=methyl-accepting chemotaxis protein;protein_id=UUF04661.1;transl_table=11 CP098604.1 Genbank pseudogene 3313149 3314601 . - . ID=gene-NDY25_14465;Name=NDY25_14465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14465;pseudo=true CP098604.1 Protein Homology CDS 3313149 3314601 . - 0 ID=cds-NDY25_14465;Parent=gene-NDY25_14465;Note=frameshifted;Ontology_term=GO:0071704,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038613.1;locus_tag=NDY25_14465;product=cellulase family glycosylhydrolase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3314804 3316288 . + . ID=gene-NDY25_14470;Name=NDY25_14470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14470 CP098604.1 Protein Homology CDS 3314804 3316288 . + 0 ID=cds-UUF01174.1;Parent=gene-NDY25_14470;Dbxref=NCBI_GP:UUF01174.1;Name=UUF01174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116599.1;locus_tag=NDY25_14470;product=SulP family inorganic anion transporter;protein_id=UUF01174.1;transl_table=11 CP098604.1 Genbank gene 3316553 3317536 . + . ID=gene-NDY25_14475;Name=NDY25_14475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14475 CP098604.1 Protein Homology CDS 3316553 3317536 . + 0 ID=cds-UUF01175.1;Parent=gene-NDY25_14475;Dbxref=NCBI_GP:UUF01175.1;Name=UUF01175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462838.1;locus_tag=NDY25_14475;product=GGDEF domain-containing protein;protein_id=UUF01175.1;transl_table=11 CP098604.1 Genbank gene 3317711 3319360 . + . ID=gene-NDY25_14480;Name=NDY25_14480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14480 CP098604.1 Protein Homology CDS 3317711 3319360 . + 0 ID=cds-UUF04662.1;Parent=gene-NDY25_14480;Dbxref=NCBI_GP:UUF04662.1;Name=UUF04662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489719.1;locus_tag=NDY25_14480;product=M28 family metallopeptidase;protein_id=UUF04662.1;transl_table=11 CP098604.1 Genbank gene 3319900 3320040 . + . ID=gene-NDY25_14485;Name=NDY25_14485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14485 CP098604.1 GeneMarkS-2+ CDS 3319900 3320040 . + 0 ID=cds-UUF01176.1;Parent=gene-NDY25_14485;Dbxref=NCBI_GP:UUF01176.1;Name=UUF01176.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14485;product=hypothetical protein;protein_id=UUF01176.1;transl_table=11 CP098604.1 Genbank gene 3320369 3322306 . + . ID=gene-NDY25_14490;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=NDY25_14490 CP098604.1 Protein Homology CDS 3320369 3322306 . + 0 ID=cds-UUF01177.1;Parent=gene-NDY25_14490;Dbxref=NCBI_GP:UUF01177.1;Name=UUF01177.1;gbkey=CDS;gene=mdoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915513.1;locus_tag=NDY25_14490;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=UUF01177.1;transl_table=11 CP098604.1 Genbank gene 3322466 3323131 . + . ID=gene-NDY25_14495;Name=NDY25_14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14495 CP098604.1 Protein Homology CDS 3322466 3323131 . + 0 ID=cds-UUF01178.1;Parent=gene-NDY25_14495;Dbxref=NCBI_GP:UUF01178.1;Name=UUF01178.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376058.1;locus_tag=NDY25_14495;product=alpha/beta hydrolase;protein_id=UUF01178.1;transl_table=11 CP098604.1 Genbank gene 3323136 3324188 . + . ID=gene-NDY25_14500;Name=NDY25_14500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14500 CP098604.1 Protein Homology CDS 3323136 3324188 . + 0 ID=cds-UUF01179.1;Parent=gene-NDY25_14500;Dbxref=NCBI_GP:UUF01179.1;Name=UUF01179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409486.1;locus_tag=NDY25_14500;product=sensor histidine kinase;protein_id=UUF01179.1;transl_table=11 CP098604.1 Genbank gene 3324219 3324950 . + . ID=gene-NDY25_14505;Name=NDY25_14505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14505 CP098604.1 Protein Homology CDS 3324219 3324950 . + 0 ID=cds-UUF01180.1;Parent=gene-NDY25_14505;Dbxref=NCBI_GP:UUF01180.1;Name=UUF01180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451604.1;locus_tag=NDY25_14505;product=LytTR family DNA-binding domain-containing protein;protein_id=UUF01180.1;transl_table=11 CP098604.1 Genbank gene 3325110 3326024 . + . ID=gene-NDY25_14510;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=NDY25_14510 CP098604.1 Protein Homology CDS 3325110 3326024 . + 0 ID=cds-UUF01181.1;Parent=gene-NDY25_14510;Dbxref=NCBI_GP:UUF01181.1;Name=UUF01181.1;Ontology_term=GO:0006779,GO:0004418,GO:0005737;gbkey=CDS;gene=hemC;go_component=cytoplasm|0005737||IEA;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155437.1;locus_tag=NDY25_14510;product=hydroxymethylbilane synthase;protein_id=UUF01181.1;transl_table=11 CP098604.1 Genbank gene 3326222 3327022 . - . ID=gene-NDY25_14515;Name=NDY25_14515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14515 CP098604.1 Protein Homology CDS 3326222 3327022 . - 0 ID=cds-UUF01182.1;Parent=gene-NDY25_14515;Dbxref=NCBI_GP:UUF01182.1;Name=UUF01182.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302001.1;locus_tag=NDY25_14515;product=DUF481 domain-containing protein;protein_id=UUF01182.1;transl_table=11 CP098604.1 Genbank gene 3327471 3328436 . + . ID=gene-NDY25_14520;Name=NDY25_14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14520 CP098604.1 Protein Homology CDS 3327471 3328436 . + 0 ID=cds-UUF01183.1;Parent=gene-NDY25_14520;Dbxref=NCBI_GP:UUF01183.1;Name=UUF01183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451607.1;locus_tag=NDY25_14520;product=YafY family transcriptional regulator;protein_id=UUF01183.1;transl_table=11 CP098604.1 Genbank gene 3328515 3329084 . - . ID=gene-NDY25_14525;Name=NDY25_14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14525 CP098604.1 Protein Homology CDS 3328515 3329084 . - 0 ID=cds-UUF01184.1;Parent=gene-NDY25_14525;Dbxref=NCBI_GP:UUF01184.1;Name=UUF01184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368302.1;locus_tag=NDY25_14525;product=lipocalin family protein;protein_id=UUF01184.1;transl_table=11 CP098604.1 Genbank gene 3329330 3329641 . + . ID=gene-NDY25_14530;Name=NDY25_14530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14530 CP098604.1 Protein Homology CDS 3329330 3329641 . + 0 ID=cds-UUF01185.1;Parent=gene-NDY25_14530;Dbxref=NCBI_GP:UUF01185.1;Name=UUF01185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368301.1;locus_tag=NDY25_14530;product=hypothetical protein;protein_id=UUF01185.1;transl_table=11 CP098604.1 Genbank gene 3329713 3331806 . + . ID=gene-NDY25_14535;Name=NDY25_14535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14535 CP098604.1 Protein Homology CDS 3329713 3331806 . + 0 ID=cds-UUF01186.1;Parent=gene-NDY25_14535;Dbxref=NCBI_GP:UUF01186.1;Name=UUF01186.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903637.1;locus_tag=NDY25_14535;product=prolyl oligopeptidase family serine peptidase;protein_id=UUF01186.1;transl_table=11 CP098604.1 Genbank gene 3332430 3333614 . - . ID=gene-NDY25_14540;Name=NDY25_14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14540 CP098604.1 Protein Homology CDS 3332430 3333614 . - 0 ID=cds-UUF01187.1;Parent=gene-NDY25_14540;Dbxref=NCBI_GP:UUF01187.1;Name=UUF01187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155429.1;locus_tag=NDY25_14540;product=pyridoxal phosphate-dependent aminotransferase;protein_id=UUF01187.1;transl_table=11 CP098604.1 Genbank gene 3333952 3336093 . + . ID=gene-NDY25_14545;Name=NDY25_14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14545 CP098604.1 Protein Homology CDS 3333952 3336093 . + 0 ID=cds-UUF01188.1;Parent=gene-NDY25_14545;Dbxref=NCBI_GP:UUF01188.1;Name=UUF01188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437330.1;locus_tag=NDY25_14545;product=S9 family peptidase;protein_id=UUF01188.1;transl_table=11 CP098604.1 Genbank gene 3336254 3336652 . + . ID=gene-NDY25_14550;Name=NDY25_14550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14550 CP098604.1 Protein Homology CDS 3336254 3336652 . + 0 ID=cds-UUF01189.1;Parent=gene-NDY25_14550;Dbxref=NCBI_GP:UUF01189.1;Name=UUF01189.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451313.1;locus_tag=NDY25_14550;product=YbaN family protein;protein_id=UUF01189.1;transl_table=11 CP098604.1 Genbank gene 3336692 3336946 . + . ID=gene-NDY25_14555;Name=NDY25_14555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14555 CP098604.1 Protein Homology CDS 3336692 3336946 . + 0 ID=cds-UUF01190.1;Parent=gene-NDY25_14555;Dbxref=NCBI_GP:UUF01190.1;Name=UUF01190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155427.1;locus_tag=NDY25_14555;product=lipoprotein;protein_id=UUF01190.1;transl_table=11 CP098604.1 Genbank gene 3336936 3337787 . + . ID=gene-NDY25_14560;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=NDY25_14560 CP098604.1 Protein Homology CDS 3336936 3337787 . + 0 ID=cds-UUF01191.1;Parent=gene-NDY25_14560;Dbxref=NCBI_GP:UUF01191.1;Name=UUF01191.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903631.1;locus_tag=NDY25_14560;product=diaminopimelate epimerase;protein_id=UUF01191.1;transl_table=11 CP098604.1 Genbank gene 3337787 3338458 . + . ID=gene-NDY25_14565;Name=NDY25_14565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14565 CP098604.1 Protein Homology CDS 3337787 3338458 . + 0 ID=cds-UUF01192.1;Parent=gene-NDY25_14565;Dbxref=NCBI_GP:UUF01192.1;Name=UUF01192.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155425.1;locus_tag=NDY25_14565;product=DUF484 family protein;protein_id=UUF01192.1;transl_table=11 CP098604.1 Genbank gene 3338538 3339455 . + . ID=gene-NDY25_14570;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=NDY25_14570 CP098604.1 Protein Homology CDS 3338538 3339455 . + 0 ID=cds-UUF01193.1;Parent=gene-NDY25_14570;Dbxref=NCBI_GP:UUF01193.1;Name=UUF01193.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerC;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173863.1;locus_tag=NDY25_14570;product=tyrosine recombinase XerC;protein_id=UUF01193.1;transl_table=11 CP098604.1 Genbank gene 3339837 3340388 . + . ID=gene-NDY25_14575;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=NDY25_14575 CP098604.1 Protein Homology CDS 3339837 3340388 . + 0 ID=cds-UUF01194.1;Parent=gene-NDY25_14575;Dbxref=NCBI_GP:UUF01194.1;Name=UUF01194.1;Ontology_term=GO:0051603,GO:0004298;gbkey=CDS;gene=hslV;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in cellular protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011260360.1;locus_tag=NDY25_14575;product=ATP-dependent protease subunit HslV;protein_id=UUF01194.1;transl_table=11 CP098604.1 Genbank gene 3340498 3341865 . + . ID=gene-NDY25_14580;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=NDY25_14580 CP098604.1 Protein Homology CDS 3340498 3341865 . + 0 ID=cds-UUF01195.1;Parent=gene-NDY25_14580;Dbxref=NCBI_GP:UUF01195.1;Name=UUF01195.1;Ontology_term=GO:0005524,GO:0008233,GO:0016887;gbkey=CDS;gene=hslU;go_function=ATP binding|0005524||IEA,peptidase activity|0008233||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804707.1;locus_tag=NDY25_14580;product=ATP-dependent protease ATPase subunit HslU;protein_id=UUF01195.1;transl_table=11 CP098604.1 Genbank gene 3342007 3342453 . - . ID=gene-NDY25_14585;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=NDY25_14585 CP098604.1 Protein Homology CDS 3342007 3342453 . - 0 ID=cds-UUF01196.1;Parent=gene-NDY25_14585;Dbxref=NCBI_GP:UUF01196.1;Name=UUF01196.1;Ontology_term=GO:0015986,GO:0046933,GO:0000275,GO:0045261,GO:0045262;gbkey=CDS;gene=atpC;go_component=mitochondrial proton-transporting ATP synthase complex%2C catalytic sector F(1)|0000275||IEA,proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA,plasma membrane proton-transporting ATP synthase complex%2C catalytic core F(1)|0045262||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451320.1;locus_tag=NDY25_14585;product=ATP synthase F1 subunit epsilon;protein_id=UUF01196.1;transl_table=11 CP098604.1 Genbank gene 3342621 3343076 . - . ID=gene-NDY25_14590;Name=NDY25_14590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14590 CP098604.1 Protein Homology CDS 3342621 3343076 . - 0 ID=cds-UUF01197.1;Parent=gene-NDY25_14590;Dbxref=NCBI_GP:UUF01197.1;Name=UUF01197.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346314.1;locus_tag=NDY25_14590;product=nucleoside deaminase;protein_id=UUF01197.1;transl_table=11 CP098604.1 Genbank gene 3343073 3343579 . - . ID=gene-NDY25_14595;Name=NDY25_14595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14595 CP098604.1 Protein Homology CDS 3343073 3343579 . - 0 ID=cds-UUF01198.1;Parent=gene-NDY25_14595;Dbxref=NCBI_GP:UUF01198.1;Name=UUF01198.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451322.1;locus_tag=NDY25_14595;product=GNAT family N-acetyltransferase;protein_id=UUF01198.1;transl_table=11 CP098604.1 Genbank gene 3344057 3345145 . - . ID=gene-NDY25_14600;Name=NDY25_14600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14600 CP098604.1 Protein Homology CDS 3344057 3345145 . - 0 ID=cds-UUF01199.1;Parent=gene-NDY25_14600;Dbxref=NCBI_GP:UUF01199.1;Name=UUF01199.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482758.1;locus_tag=NDY25_14600;product=HlyD family secretion protein;protein_id=UUF01199.1;transl_table=11 CP098604.1 Genbank gene 3345142 3346791 . - . ID=gene-NDY25_14605;Name=NDY25_14605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14605 CP098604.1 Protein Homology CDS 3345142 3346791 . - 0 ID=cds-UUF01200.1;Parent=gene-NDY25_14605;Dbxref=NCBI_GP:UUF01200.1;Name=UUF01200.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038582.1;locus_tag=NDY25_14605;product=MFS transporter;protein_id=UUF01200.1;transl_table=11 CP098604.1 Genbank gene 3346880 3347641 . + . ID=gene-NDY25_14610;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=NDY25_14610 CP098604.1 Protein Homology CDS 3346880 3347641 . + 0 ID=cds-UUF01201.1;Parent=gene-NDY25_14610;Dbxref=NCBI_GP:UUF01201.1;Name=UUF01201.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303204.1;locus_tag=NDY25_14610;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=UUF01201.1;transl_table=11 CP098604.1 Genbank gene 3347844 3348734 . + . ID=gene-NDY25_14615;Name=NDY25_14615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14615 CP098604.1 Protein Homology CDS 3347844 3348734 . + 0 ID=cds-UUF01202.1;Parent=gene-NDY25_14615;Dbxref=NCBI_GP:UUF01202.1;Name=UUF01202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302598.1;locus_tag=NDY25_14615;product=GGDEF domain-containing protein;protein_id=UUF01202.1;transl_table=11 CP098604.1 Genbank gene 3348810 3350765 . + . ID=gene-NDY25_14620;Name=NDY25_14620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14620 CP098604.1 Protein Homology CDS 3348810 3350765 . + 0 ID=cds-UUF01203.1;Parent=gene-NDY25_14620;Dbxref=NCBI_GP:UUF01203.1;Name=UUF01203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904589.1;locus_tag=NDY25_14620;product=M1 family metallopeptidase;protein_id=UUF01203.1;transl_table=11 CP098604.1 Genbank gene 3350943 3351662 . + . ID=gene-NDY25_14625;Name=NDY25_14625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14625 CP098604.1 Protein Homology CDS 3350943 3351662 . + 0 ID=cds-UUF01204.1;Parent=gene-NDY25_14625;Dbxref=NCBI_GP:UUF01204.1;Name=UUF01204.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804719.1;locus_tag=NDY25_14625;product=hypothetical protein;protein_id=UUF01204.1;transl_table=11 CP098604.1 Genbank gene 3351821 3352462 . + . ID=gene-NDY25_14630;Name=NDY25_14630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14630 CP098604.1 Protein Homology CDS 3351821 3352462 . + 0 ID=cds-UUF01205.1;Parent=gene-NDY25_14630;Dbxref=NCBI_GP:UUF01205.1;Name=UUF01205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112913.1;locus_tag=NDY25_14630;product=HAD family hydrolase;protein_id=UUF01205.1;transl_table=11 CP098604.1 Genbank gene 3353505 3355478 . + . ID=gene-NDY25_14635;Name=NDY25_14635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14635 CP098604.1 Protein Homology CDS 3353505 3355478 . + 0 ID=cds-UUF01206.1;Parent=gene-NDY25_14635;Dbxref=NCBI_GP:UUF01206.1;Name=UUF01206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577293.1;locus_tag=NDY25_14635;product=methanol/ethanol family PQQ-dependent dehydrogenase;protein_id=UUF01206.1;transl_table=11 CP098604.1 Genbank gene 3355475 3357253 . + . ID=gene-NDY25_14640;Name=NDY25_14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14640 CP098604.1 Protein Homology CDS 3355475 3357253 . + 0 ID=cds-UUF01207.1;Parent=gene-NDY25_14640;Dbxref=NCBI_GP:UUF01207.1;Name=UUF01207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155411.1;locus_tag=NDY25_14640;product=quinoprotein dehydrogenase-associated putative ABC transporter substrate-binding protein;protein_id=UUF01207.1;transl_table=11 CP098604.1 Genbank pseudogene 3357291 3357943 . + . ID=gene-NDY25_14645;Name=NDY25_14645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14645;pseudo=true CP098604.1 Protein Homology CDS 3357291 3357943 . + 0 ID=cds-NDY25_14645;Parent=gene-NDY25_14645;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155410.1;locus_tag=NDY25_14645;product=cytochrome c;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3357940 3359013 . + . ID=gene-NDY25_14650;Name=NDY25_14650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14650 CP098604.1 Protein Homology CDS 3357940 3359013 . + 0 ID=cds-UUF01208.1;Parent=gene-NDY25_14650;Dbxref=NCBI_GP:UUF01208.1;Name=UUF01208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904615.1;locus_tag=NDY25_14650;product=beta-propeller fold lactonase family protein;protein_id=UUF01208.1;transl_table=11 CP098604.1 Genbank gene 3359049 3360155 . + . ID=gene-NDY25_14655;Name=NDY25_14655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14655 CP098604.1 Protein Homology CDS 3359049 3360155 . + 0 ID=cds-UUF01209.1;Parent=gene-NDY25_14655;Dbxref=NCBI_GP:UUF01209.1;Name=UUF01209.1;Ontology_term=GO:0006113,GO:0009404,GO:0004024,GO:0051903;gbkey=CDS;go_function=alcohol dehydrogenase activity%2C zinc-dependent|0004024||IEA,S-(hydroxymethyl)glutathione dehydrogenase activity|0051903||IEA;go_process=fermentation|0006113||IEA,toxin metabolic process|0009404||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000842106.1;locus_tag=NDY25_14655;product=S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase;protein_id=UUF01209.1;transl_table=11 CP098604.1 Genbank gene 3360307 3362598 . + . ID=gene-NDY25_14660;Name=NDY25_14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14660 CP098604.1 Protein Homology CDS 3360307 3362598 . + 0 ID=cds-UUF04663.1;Parent=gene-NDY25_14660;Dbxref=NCBI_GP:UUF04663.1;Name=UUF04663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450050.1;locus_tag=NDY25_14660;product=TonB-dependent receptor;protein_id=UUF04663.1;transl_table=11 CP098604.1 Genbank gene 3362669 3363355 . - . ID=gene-NDY25_14665;Name=NDY25_14665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14665 CP098604.1 Protein Homology CDS 3362669 3363355 . - 0 ID=cds-UUF01210.1;Parent=gene-NDY25_14665;Dbxref=NCBI_GP:UUF01210.1;Name=UUF01210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368273.1;locus_tag=NDY25_14665;product=class I SAM-dependent methyltransferase;protein_id=UUF01210.1;transl_table=11 CP098604.1 Genbank gene 3363415 3364737 . - . ID=gene-NDY25_14670;Name=NDY25_14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14670 CP098604.1 Protein Homology CDS 3363415 3364737 . - 0 ID=cds-UUF01211.1;Parent=gene-NDY25_14670;Dbxref=NCBI_GP:UUF01211.1;Name=UUF01211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118439.1;locus_tag=NDY25_14670;product=hypothetical protein;protein_id=UUF01211.1;transl_table=11 CP098604.1 Genbank gene 3364835 3365671 . - . ID=gene-NDY25_14675;Name=NDY25_14675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14675 CP098604.1 Protein Homology CDS 3364835 3365671 . - 0 ID=cds-UUF01212.1;Parent=gene-NDY25_14675;Dbxref=NCBI_GP:UUF01212.1;Name=UUF01212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118438.1;locus_tag=NDY25_14675;product=sulfite exporter TauE/SafE family protein;protein_id=UUF01212.1;transl_table=11 CP098604.1 Genbank gene 3365671 3367125 . - . ID=gene-NDY25_14680;Name=phnY;gbkey=Gene;gene=phnY;gene_biotype=protein_coding;locus_tag=NDY25_14680 CP098604.1 Protein Homology CDS 3365671 3367125 . - 0 ID=cds-UUF01213.1;Parent=gene-NDY25_14680;Dbxref=NCBI_GP:UUF01213.1;Name=UUF01213.1;gbkey=CDS;gene=phnY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368270.1;locus_tag=NDY25_14680;product=phosphonoacetaldehyde dehydrogenase;protein_id=UUF01213.1;transl_table=11 CP098604.1 Genbank gene 3367142 3369160 . - . ID=gene-NDY25_14685;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=NDY25_14685 CP098604.1 Protein Homology CDS 3367142 3369160 . - 0 ID=cds-UUF04664.1;Parent=gene-NDY25_14685;Dbxref=NCBI_GP:UUF04664.1;Name=UUF04664.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368268.1;locus_tag=NDY25_14685;product=asparagine synthase (glutamine-hydrolyzing);protein_id=UUF04664.1;transl_table=11 CP098604.1 Genbank gene 3369171 3369896 . - . ID=gene-NDY25_14690;Name=NDY25_14690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14690 CP098604.1 Protein Homology CDS 3369171 3369896 . - 0 ID=cds-UUF01214.1;Parent=gene-NDY25_14690;Dbxref=NCBI_GP:UUF01214.1;Name=UUF01214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368267.1;locus_tag=NDY25_14690;product=NTP transferase domain-containing protein;protein_id=UUF01214.1;transl_table=11 CP098604.1 Genbank gene 3369893 3370846 . - . ID=gene-NDY25_14695;Name=NDY25_14695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14695 CP098604.1 Protein Homology CDS 3369893 3370846 . - 0 ID=cds-UUF01215.1;Parent=gene-NDY25_14695;Dbxref=NCBI_GP:UUF01215.1;Name=UUF01215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368266.1;locus_tag=NDY25_14695;product=diiron oxygenase;protein_id=UUF01215.1;transl_table=11 CP098604.1 Genbank gene 3370843 3372060 . - . ID=gene-NDY25_14700;Name=aepY;gbkey=Gene;gene=aepY;gene_biotype=protein_coding;locus_tag=NDY25_14700 CP098604.1 Protein Homology CDS 3370843 3372060 . - 0 ID=cds-UUF01216.1;Parent=gene-NDY25_14700;Dbxref=NCBI_GP:UUF01216.1;Name=UUF01216.1;Ontology_term=GO:0017000,GO:0033980;gbkey=CDS;gene=aepY;go_function=phosphonopyruvate decarboxylase activity|0033980||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368265.1;locus_tag=NDY25_14700;product=phosphonopyruvate decarboxylase;protein_id=UUF01216.1;transl_table=11 CP098604.1 Genbank gene 3372057 3373022 . - . ID=gene-NDY25_14705;Name=aepX;gbkey=Gene;gene=aepX;gene_biotype=protein_coding;locus_tag=NDY25_14705 CP098604.1 Protein Homology CDS 3372057 3373022 . - 0 ID=cds-UUF01217.1;Parent=gene-NDY25_14705;Dbxref=NCBI_GP:UUF01217.1;Name=UUF01217.1;Ontology_term=GO:0019634,GO:0050188;gbkey=CDS;gene=aepX;go_function=phosphoenolpyruvate mutase activity|0050188||IEA;go_process=organic phosphonate metabolic process|0019634||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375707.1;locus_tag=NDY25_14705;product=phosphoenolpyruvate mutase;protein_id=UUF01217.1;transl_table=11 CP098604.1 Genbank gene 3373019 3373186 . - . ID=gene-NDY25_14710;Name=NDY25_14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14710 CP098604.1 GeneMarkS-2+ CDS 3373019 3373186 . - 0 ID=cds-UUF01218.1;Parent=gene-NDY25_14710;Dbxref=NCBI_GP:UUF01218.1;Name=UUF01218.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14710;product=hypothetical protein;protein_id=UUF01218.1;transl_table=11 CP098604.1 Genbank gene 3374223 3376196 . - . ID=gene-NDY25_14715;Name=NDY25_14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14715 CP098604.1 Protein Homology CDS 3374223 3376196 . - 0 ID=cds-UUF01219.1;Parent=gene-NDY25_14715;Dbxref=NCBI_GP:UUF01219.1;Name=UUF01219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482737.1;locus_tag=NDY25_14715;product=sigma-54-dependent Fis family transcriptional regulator;protein_id=UUF01219.1;transl_table=11 CP098604.1 Genbank gene 3376551 3377483 . - . ID=gene-NDY25_14720;Name=NDY25_14720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14720 CP098604.1 Protein Homology CDS 3376551 3377483 . - 0 ID=cds-UUF01220.1;Parent=gene-NDY25_14720;Dbxref=NCBI_GP:UUF01220.1;Name=UUF01220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038567.1;locus_tag=NDY25_14720;product=carbohydrate kinase family protein;protein_id=UUF01220.1;transl_table=11 CP098604.1 Genbank gene 3377760 3378806 . + . ID=gene-NDY25_14725;Name=NDY25_14725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14725 CP098604.1 Protein Homology CDS 3377760 3378806 . + 0 ID=cds-UUF01221.1;Parent=gene-NDY25_14725;Dbxref=NCBI_GP:UUF01221.1;Name=UUF01221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1;locus_tag=NDY25_14725;product=rod shape-determining protein;protein_id=UUF01221.1;transl_table=11 CP098604.1 Genbank gene 3378979 3380358 . + . ID=gene-NDY25_14730;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=NDY25_14730 CP098604.1 Protein Homology CDS 3378979 3380358 . + 0 ID=cds-UUF01222.1;Parent=gene-NDY25_14730;Dbxref=NCBI_GP:UUF01222.1;Name=UUF01222.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112559.1;locus_tag=NDY25_14730;product=rod shape-determining protein MreC;protein_id=UUF01222.1;transl_table=11 CP098604.1 Genbank gene 3380355 3380840 . + . ID=gene-NDY25_14735;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=NDY25_14735 CP098604.1 Protein Homology CDS 3380355 3380840 . + 0 ID=cds-UUF01223.1;Parent=gene-NDY25_14735;Dbxref=NCBI_GP:UUF01223.1;Name=UUF01223.1;Ontology_term=GO:0008360,GO:0003674;gbkey=CDS;gene=mreD;go_function=molecular_function|0003674||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911183.1;locus_tag=NDY25_14735;product=rod shape-determining protein MreD;protein_id=UUF01223.1;transl_table=11 CP098604.1 Genbank gene 3380844 3382904 . + . ID=gene-NDY25_14740;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=NDY25_14740 CP098604.1 Protein Homology CDS 3380844 3382904 . + 0 ID=cds-UUF01224.1;Parent=gene-NDY25_14740;Dbxref=NCBI_GP:UUF01224.1;Name=UUF01224.1;Ontology_term=GO:0009252,GO:0003824;gbkey=CDS;gene=mrdA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303045.1;locus_tag=NDY25_14740;product=penicillin-binding protein 2;protein_id=UUF01224.1;transl_table=11 CP098604.1 Genbank gene 3382901 3384019 . + . ID=gene-NDY25_14745;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;locus_tag=NDY25_14745 CP098604.1 Protein Homology CDS 3382901 3384019 . + 0 ID=cds-UUF01225.1;Parent=gene-NDY25_14745;Dbxref=NCBI_GP:UUF01225.1;Name=UUF01225.1;Ontology_term=GO:0008360;gbkey=CDS;gene=rodA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573354.1;locus_tag=NDY25_14745;product=rod shape-determining protein RodA;protein_id=UUF01225.1;transl_table=11 CP098604.1 Genbank gene 3384312 3386009 . + . ID=gene-NDY25_14750;Name=NDY25_14750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14750 CP098604.1 Protein Homology CDS 3384312 3386009 . + 0 ID=cds-UUF01226.1;Parent=gene-NDY25_14750;Dbxref=NCBI_GP:UUF01226.1;Name=UUF01226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155400.1;locus_tag=NDY25_14750;product=type IV secretory system conjugative DNA transfer family protein;protein_id=UUF01226.1;transl_table=11 CP098604.1 Genbank pseudogene 3386276 3386482 . + . ID=gene-NDY25_14755;Name=NDY25_14755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_14755;pseudo=true CP098604.1 Protein Homology CDS 3386276 3386482 . + 0 ID=cds-NDY25_14755;Parent=gene-NDY25_14755;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167461.1;locus_tag=NDY25_14755;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3387482 3391183 . + . ID=gene-NDY25_14760;Name=NDY25_14760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14760 CP098604.1 Protein Homology CDS 3387482 3391183 . + 0 ID=cds-UUF04665.1;Parent=gene-NDY25_14760;Dbxref=NCBI_GP:UUF04665.1;Name=UUF04665.1;Ontology_term=GO:0005524,GO:0016301;gbkey=CDS;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;inference=COORDINATES: protein motif:HMM:NF018154.2;locus_tag=NDY25_14760;product=zeta toxin family protein;protein_id=UUF04665.1;transl_table=11 CP098604.1 Genbank gene 3391571 3392977 . + . ID=gene-NDY25_14765;Name=NDY25_14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14765 CP098604.1 Protein Homology CDS 3391571 3392977 . + 0 ID=cds-UUF01227.1;Parent=gene-NDY25_14765;Dbxref=NCBI_GP:UUF01227.1;Name=UUF01227.1;Ontology_term=GO:0005975,GO:0004650;gbkey=CDS;go_function=polygalacturonase activity|0004650||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346338.1;locus_tag=NDY25_14765;product=glycosyl hydrolase family 28 protein;protein_id=UUF01227.1;transl_table=11 CP098604.1 Genbank gene 3393269 3394408 . + . ID=gene-NDY25_14770;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=NDY25_14770 CP098604.1 Protein Homology CDS 3393269 3394408 . + 0 ID=cds-UUF01228.1;Parent=gene-NDY25_14770;Dbxref=NCBI_GP:UUF01228.1;Name=UUF01228.1;Ontology_term=GO:0009253,GO:0016757;gbkey=CDS;gene=mltB;go_function=glycosyltransferase activity|0016757||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118980.1;locus_tag=NDY25_14770;product=lytic murein transglycosylase B;protein_id=UUF01228.1;transl_table=11 CP098604.1 Genbank gene 3394405 3395805 . + . ID=gene-NDY25_14775;Name=NDY25_14775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14775 CP098604.1 Protein Homology CDS 3394405 3395805 . + 0 ID=cds-UUF01229.1;Parent=gene-NDY25_14775;Dbxref=NCBI_GP:UUF01229.1;Name=UUF01229.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155355.1;locus_tag=NDY25_14775;product=septal ring lytic transglycosylase RlpA family protein;protein_id=UUF01229.1;transl_table=11 CP098604.1 Genbank gene 3396091 3397296 . + . ID=gene-NDY25_14780;Name=NDY25_14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14780 CP098604.1 Protein Homology CDS 3396091 3397296 . + 0 ID=cds-UUF01230.1;Parent=gene-NDY25_14780;Dbxref=NCBI_GP:UUF01230.1;Name=UUF01230.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115444.1;locus_tag=NDY25_14780;product=D-alanyl-D-alanine carboxypeptidase;protein_id=UUF01230.1;transl_table=11 CP098604.1 Genbank gene 3397420 3398481 . - . ID=gene-NDY25_14785;Name=NDY25_14785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14785 CP098604.1 Protein Homology CDS 3397420 3398481 . - 0 ID=cds-UUF01231.1;Parent=gene-NDY25_14785;Dbxref=NCBI_GP:UUF01231.1;Name=UUF01231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159067.1;locus_tag=NDY25_14785;product=lipid A deacylase LpxR family protein;protein_id=UUF01231.1;transl_table=11 CP098604.1 Genbank gene 3398772 3399755 . + . ID=gene-NDY25_14790;Name=NDY25_14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14790 CP098604.1 Protein Homology CDS 3398772 3399755 . + 0 ID=cds-UUF01232.1;Parent=gene-NDY25_14790;Dbxref=NCBI_GP:UUF01232.1;Name=UUF01232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089329.1;locus_tag=NDY25_14790;product=CsgG/HfaB family protein;protein_id=UUF01232.1;transl_table=11 CP098604.1 Genbank gene 3399895 3400173 . + . ID=gene-NDY25_14795;Name=NDY25_14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14795 CP098604.1 Protein Homology CDS 3399895 3400173 . + 0 ID=cds-UUF01233.1;Parent=gene-NDY25_14795;Dbxref=NCBI_GP:UUF01233.1;Name=UUF01233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409453.1;locus_tag=NDY25_14795;product=YbeD family protein;protein_id=UUF01233.1;transl_table=11 CP098604.1 Genbank gene 3400161 3400859 . + . ID=gene-NDY25_14800;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=NDY25_14800 CP098604.1 Protein Homology CDS 3400161 3400859 . + 0 ID=cds-UUF01234.1;Parent=gene-NDY25_14800;Dbxref=NCBI_GP:UUF01234.1;Name=UUF01234.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158468.1;locus_tag=NDY25_14800;product=lipoyl(octanoyl) transferase LipB;protein_id=UUF01234.1;transl_table=11 CP098604.1 Genbank gene 3400875 3401888 . + . ID=gene-NDY25_14805;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=NDY25_14805 CP098604.1 Protein Homology CDS 3400875 3401888 . + 0 ID=cds-UUF01235.1;Parent=gene-NDY25_14805;Dbxref=NCBI_GP:UUF01235.1;Name=UUF01235.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301161.1;locus_tag=NDY25_14805;product=lipoyl synthase;protein_id=UUF01235.1;transl_table=11 CP098604.1 Genbank gene 3402145 3404304 . + . ID=gene-NDY25_14810;Name=NDY25_14810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14810 CP098604.1 Protein Homology CDS 3402145 3404304 . + 0 ID=cds-UUF04666.1;Parent=gene-NDY25_14810;Dbxref=NCBI_GP:UUF04666.1;Name=UUF04666.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155351.1;locus_tag=NDY25_14810;product=carboxy terminal-processing peptidase;protein_id=UUF04666.1;transl_table=11 CP098604.1 Genbank gene 3404735 3405613 . - . ID=gene-NDY25_14815;Name=NDY25_14815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14815 CP098604.1 Protein Homology CDS 3404735 3405613 . - 0 ID=cds-UUF01236.1;Parent=gene-NDY25_14815;Dbxref=NCBI_GP:UUF01236.1;Name=UUF01236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159070.1;locus_tag=NDY25_14815;product=endonuclease/exonuclease/phosphatase family protein;protein_id=UUF01236.1;transl_table=11 CP098604.1 Genbank gene 3405784 3406839 . + . ID=gene-NDY25_14820;Name=NDY25_14820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14820 CP098604.1 Protein Homology CDS 3405784 3406839 . + 0 ID=cds-UUF01237.1;Parent=gene-NDY25_14820;Dbxref=NCBI_GP:UUF01237.1;Name=UUF01237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303950.1;locus_tag=NDY25_14820;product=bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase;protein_id=UUF01237.1;transl_table=11 CP098604.1 Genbank gene 3406968 3408371 . + . ID=gene-NDY25_14825;Name=NDY25_14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14825 CP098604.1 Protein Homology CDS 3406968 3408371 . + 0 ID=cds-UUF01238.1;Parent=gene-NDY25_14825;Dbxref=NCBI_GP:UUF01238.1;Name=UUF01238.1;Ontology_term=GO:0009435,GO:0004514;gbkey=CDS;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990339.1;locus_tag=NDY25_14825;product=nicotinate phosphoribosyltransferase;protein_id=UUF01238.1;transl_table=11 CP098604.1 Genbank gene 3408394 3409494 . + . ID=gene-NDY25_14830;Name=NDY25_14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14830 CP098604.1 Protein Homology CDS 3408394 3409494 . + 0 ID=cds-UUF01239.1;Parent=gene-NDY25_14830;Dbxref=NCBI_GP:UUF01239.1;Name=UUF01239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162368.1;locus_tag=NDY25_14830;product=hypothetical protein;protein_id=UUF01239.1;transl_table=11 CP098604.1 Genbank gene 3409487 3410551 . + . ID=gene-NDY25_14835;Name=NDY25_14835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14835 CP098604.1 Protein Homology CDS 3409487 3410551 . + 0 ID=cds-UUF01240.1;Parent=gene-NDY25_14835;Dbxref=NCBI_GP:UUF01240.1;Name=UUF01240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089336.1;locus_tag=NDY25_14835;product=site-specific DNA-methyltransferase;protein_id=UUF01240.1;transl_table=11 CP098604.1 Genbank gene 3410626 3411429 . + . ID=gene-NDY25_14840;Name=NDY25_14840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14840 CP098604.1 Protein Homology CDS 3410626 3411429 . + 0 ID=cds-UUF01241.1;Parent=gene-NDY25_14840;Dbxref=NCBI_GP:UUF01241.1;Name=UUF01241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155343.1;locus_tag=NDY25_14840;product=DUF2242 domain-containing protein;protein_id=UUF01241.1;transl_table=11 CP098604.1 Genbank gene 3411554 3411934 . + . ID=gene-NDY25_14845;Name=NDY25_14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14845 CP098604.1 Protein Homology CDS 3411554 3411934 . + 0 ID=cds-UUF01242.1;Parent=gene-NDY25_14845;Dbxref=NCBI_GP:UUF01242.1;Name=UUF01242.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911143.1;locus_tag=NDY25_14845;product=glycine zipper 2TM domain-containing protein;protein_id=UUF01242.1;transl_table=11 CP098604.1 Genbank gene 3412030 3413361 . + . ID=gene-NDY25_14850;Name=NDY25_14850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14850 CP098604.1 Protein Homology CDS 3412030 3413361 . + 0 ID=cds-UUF01243.1;Parent=gene-NDY25_14850;Dbxref=NCBI_GP:UUF01243.1;Name=UUF01243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452626.1;locus_tag=NDY25_14850;product=hypothetical protein;protein_id=UUF01243.1;transl_table=11 CP098604.1 Genbank gene 3413382 3414323 . + . ID=gene-NDY25_14855;Name=gnd;gbkey=Gene;gene=gnd;gene_biotype=protein_coding;locus_tag=NDY25_14855 CP098604.1 Protein Homology CDS 3413382 3414323 . + 0 ID=cds-UUF01244.1;Parent=gene-NDY25_14855;Dbxref=NCBI_GP:UUF01244.1;Name=UUF01244.1;Ontology_term=GO:0006098,GO:0004616;gbkey=CDS;gene=gnd;go_function=phosphogluconate dehydrogenase (decarboxylating) activity|0004616||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990351.1;locus_tag=NDY25_14855;product=decarboxylating 6-phosphogluconate dehydrogenase;protein_id=UUF01244.1;transl_table=11 CP098604.1 Genbank gene 3414378 3415448 . - . ID=gene-NDY25_14860;Name=NDY25_14860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14860 CP098604.1 Protein Homology CDS 3414378 3415448 . - 0 ID=cds-UUF01245.1;Parent=gene-NDY25_14860;Dbxref=NCBI_GP:UUF01245.1;Name=UUF01245.1;Ontology_term=GO:0000166;gbkey=CDS;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452628.1;locus_tag=NDY25_14860;product=oxidoreductase;protein_id=UUF01245.1;transl_table=11 CP098604.1 Genbank gene 3415599 3415970 . + . ID=gene-NDY25_14865;Name=NDY25_14865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14865 CP098604.1 Protein Homology CDS 3415599 3415970 . + 0 ID=cds-UUF01246.1;Parent=gene-NDY25_14865;Dbxref=NCBI_GP:UUF01246.1;Name=UUF01246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113055.1;locus_tag=NDY25_14865;product=BON domain-containing protein;protein_id=UUF01246.1;transl_table=11 CP098604.1 Genbank gene 3416249 3416758 . + . ID=gene-NDY25_14870;Name=NDY25_14870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14870 CP098604.1 Protein Homology CDS 3416249 3416758 . + 0 ID=cds-UUF01247.1;Parent=gene-NDY25_14870;Dbxref=NCBI_GP:UUF01247.1;Name=UUF01247.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR03645.1;locus_tag=NDY25_14870;product=lactoylglutathione lyase family protein;protein_id=UUF01247.1;transl_table=11 CP098604.1 Genbank gene 3416918 3418606 . + . ID=gene-NDY25_14875;Name=NDY25_14875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14875 CP098604.1 Protein Homology CDS 3416918 3418606 . + 0 ID=cds-UUF01248.1;Parent=gene-NDY25_14875;Dbxref=NCBI_GP:UUF01248.1;Name=UUF01248.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019157.2;locus_tag=NDY25_14875;product=tannase/feruloyl esterase family alpha/beta hydrolase;protein_id=UUF01248.1;transl_table=11 CP098604.1 Genbank gene 3419074 3419388 . + . ID=gene-NDY25_14880;Name=NDY25_14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14880 CP098604.1 GeneMarkS-2+ CDS 3419074 3419388 . + 0 ID=cds-UUF01249.1;Parent=gene-NDY25_14880;Dbxref=NCBI_GP:UUF01249.1;Name=UUF01249.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_14880;product=hypothetical protein;protein_id=UUF01249.1;transl_table=11 CP098604.1 Genbank gene 3419471 3420397 . - . ID=gene-NDY25_14885;Name=NDY25_14885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14885 CP098604.1 Protein Homology CDS 3419471 3420397 . - 0 ID=cds-UUF01250.1;Parent=gene-NDY25_14885;Dbxref=NCBI_GP:UUF01250.1;Name=UUF01250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006378991.1;locus_tag=NDY25_14885;product=LysR family transcriptional regulator;protein_id=UUF01250.1;transl_table=11 CP098604.1 Genbank gene 3420675 3422486 . + . ID=gene-NDY25_14890;Name=NDY25_14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14890 CP098604.1 Protein Homology CDS 3420675 3422486 . + 0 ID=cds-UUF01251.1;Parent=gene-NDY25_14890;Dbxref=NCBI_GP:UUF01251.1;Name=UUF01251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368210.1;locus_tag=NDY25_14890;product=ATP-binding protein;protein_id=UUF01251.1;transl_table=11 CP098604.1 Genbank gene 3422483 3422923 . + . ID=gene-NDY25_14895;Name=NDY25_14895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14895 CP098604.1 Protein Homology CDS 3422483 3422923 . + 0 ID=cds-UUF01252.1;Parent=gene-NDY25_14895;Dbxref=NCBI_GP:UUF01252.1;Name=UUF01252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804768.1;locus_tag=NDY25_14895;product=response regulator;protein_id=UUF01252.1;transl_table=11 CP098604.1 Genbank gene 3422927 3424429 . + . ID=gene-NDY25_14900;Name=NDY25_14900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14900 CP098604.1 Protein Homology CDS 3422927 3424429 . + 0 ID=cds-UUF01253.1;Parent=gene-NDY25_14900;Dbxref=NCBI_GP:UUF01253.1;Name=UUF01253.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346356.1;locus_tag=NDY25_14900;product=response regulator;protein_id=UUF01253.1;transl_table=11 CP098604.1 Genbank gene 3424523 3425035 . + . ID=gene-NDY25_14905;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=NDY25_14905 CP098604.1 Protein Homology CDS 3424523 3425035 . + 0 ID=cds-UUF01254.1;Parent=gene-NDY25_14905;Dbxref=NCBI_GP:UUF01254.1;Name=UUF01254.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482682.1;locus_tag=NDY25_14905;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=UUF01254.1;transl_table=11 CP098604.1 Genbank gene 3425048 3425785 . - . ID=gene-NDY25_14910;Name=NDY25_14910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14910 CP098604.1 Protein Homology CDS 3425048 3425785 . - 0 ID=cds-UUF01255.1;Parent=gene-NDY25_14910;Dbxref=NCBI_GP:UUF01255.1;Name=UUF01255.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303260.1;locus_tag=NDY25_14910;product=pteridine reductase;protein_id=UUF01255.1;transl_table=11 CP098604.1 Genbank gene 3425784 3427037 . + . ID=gene-NDY25_14915;Name=NDY25_14915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14915 CP098604.1 Protein Homology CDS 3425784 3427037 . + 0 ID=cds-UUF04667.1;Parent=gene-NDY25_14915;Dbxref=NCBI_GP:UUF04667.1;Name=UUF04667.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237264.1;locus_tag=NDY25_14915;product=SAM-dependent methyltransferase;protein_id=UUF04667.1;transl_table=11 CP098604.1 Genbank gene 3427025 3427438 . + . ID=gene-NDY25_14920;Name=NDY25_14920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14920 CP098604.1 Protein Homology CDS 3427025 3427438 . + 0 ID=cds-UUF01256.1;Parent=gene-NDY25_14920;Dbxref=NCBI_GP:UUF01256.1;Name=UUF01256.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007968563.1;locus_tag=NDY25_14920;product=VanZ family protein;protein_id=UUF01256.1;transl_table=11 CP098604.1 Genbank gene 3428084 3428941 . - . ID=gene-NDY25_14925;Name=NDY25_14925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14925 CP098604.1 Protein Homology CDS 3428084 3428941 . - 0 ID=cds-UUF01257.1;Parent=gene-NDY25_14925;Dbxref=NCBI_GP:UUF01257.1;Name=UUF01257.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451278.1;locus_tag=NDY25_14925;product=2OG-Fe(II) oxygenase;protein_id=UUF01257.1;transl_table=11 CP098604.1 Genbank gene 3429129 3430607 . + . ID=gene-NDY25_14930;Name=NDY25_14930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14930 CP098604.1 Protein Homology CDS 3429129 3430607 . + 0 ID=cds-UUF01258.1;Parent=gene-NDY25_14930;Dbxref=NCBI_GP:UUF01258.1;Name=UUF01258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925144.1;locus_tag=NDY25_14930;product=hypothetical protein;protein_id=UUF01258.1;transl_table=11 CP098604.1 Genbank gene 3430686 3433349 . + . ID=gene-NDY25_14935;Name=NDY25_14935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14935 CP098604.1 Protein Homology CDS 3430686 3433349 . + 0 ID=cds-UUF01259.1;Parent=gene-NDY25_14935;Dbxref=NCBI_GP:UUF01259.1;Name=UUF01259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923614.1;locus_tag=NDY25_14935;product=TonB-dependent receptor;protein_id=UUF01259.1;transl_table=11 CP098604.1 Genbank gene 3433509 3434327 . + . ID=gene-NDY25_14940;Name=NDY25_14940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14940 CP098604.1 Protein Homology CDS 3433509 3434327 . + 0 ID=cds-UUF01260.1;Parent=gene-NDY25_14940;Dbxref=NCBI_GP:UUF01260.1;Name=UUF01260.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167446.1;locus_tag=NDY25_14940;product=PDZ domain-containing protein;protein_id=UUF01260.1;transl_table=11 CP098604.1 Genbank gene 3434324 3436402 . + . ID=gene-NDY25_14945;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=NDY25_14945 CP098604.1 Protein Homology CDS 3434324 3436402 . + 0 ID=cds-UUF01261.1;Parent=gene-NDY25_14945;Dbxref=NCBI_GP:UUF01261.1;Name=UUF01261.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156677.1;locus_tag=NDY25_14945;product=type II secretion system secretin GspD;protein_id=UUF01261.1;transl_table=11 CP098604.1 Genbank gene 3436407 3437894 . + . ID=gene-NDY25_14950;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=NDY25_14950 CP098604.1 Protein Homology CDS 3436407 3437894 . + 0 ID=cds-UUF01262.1;Parent=gene-NDY25_14950;Dbxref=NCBI_GP:UUF01262.1;Name=UUF01262.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482668.1;locus_tag=NDY25_14950;product=type II secretion system ATPase GspE;protein_id=UUF01262.1;transl_table=11 CP098604.1 Genbank gene 3437881 3439077 . + . ID=gene-NDY25_14955;Name=gspF;gbkey=Gene;gene=gspF;gene_biotype=protein_coding;locus_tag=NDY25_14955 CP098604.1 Protein Homology CDS 3437881 3439077 . + 0 ID=cds-UUF01263.1;Parent=gene-NDY25_14955;Dbxref=NCBI_GP:UUF01263.1;Name=UUF01263.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspF;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972768.1;locus_tag=NDY25_14955;product=type II secretion system inner membrane protein GspF;protein_id=UUF01263.1;transl_table=11 CP098604.1 Genbank gene 3439106 3439570 . + . ID=gene-NDY25_14960;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=NDY25_14960 CP098604.1 Protein Homology CDS 3439106 3439570 . + 0 ID=cds-UUF01264.1;Parent=gene-NDY25_14960;Dbxref=NCBI_GP:UUF01264.1;Name=UUF01264.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156680.1;locus_tag=NDY25_14960;product=type II secretion system major pseudopilin GspG;protein_id=UUF01264.1;transl_table=11 CP098604.1 Genbank gene 3439637 3440080 . + . ID=gene-NDY25_14965;Name=NDY25_14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14965 CP098604.1 Protein Homology CDS 3439637 3440080 . + 0 ID=cds-UUF04668.1;Parent=gene-NDY25_14965;Dbxref=NCBI_GP:UUF04668.1;Name=UUF04668.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990391.1;locus_tag=NDY25_14965;product=GspH/FimT family pseudopilin;protein_id=UUF04668.1;transl_table=11 CP098604.1 Genbank gene 3440064 3440444 . + . ID=gene-NDY25_14970;Name=gspI;gbkey=Gene;gene=gspI;gene_biotype=protein_coding;locus_tag=NDY25_14970 CP098604.1 Protein Homology CDS 3440064 3440444 . + 0 ID=cds-UUF01265.1;Parent=gene-NDY25_14970;Dbxref=NCBI_GP:UUF01265.1;Name=UUF01265.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspI;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156682.1;locus_tag=NDY25_14970;product=type II secretion system minor pseudopilin GspI;protein_id=UUF01265.1;transl_table=11 CP098604.1 Genbank gene 3440441 3441064 . + . ID=gene-NDY25_14975;Name=gspJ;gbkey=Gene;gene=gspJ;gene_biotype=protein_coding;locus_tag=NDY25_14975 CP098604.1 Protein Homology CDS 3440441 3441064 . + 0 ID=cds-UUF01266.1;Parent=gene-NDY25_14975;Dbxref=NCBI_GP:UUF01266.1;Name=UUF01266.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspJ;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900871.1;locus_tag=NDY25_14975;product=type II secretion system minor pseudopilin GspJ;protein_id=UUF01266.1;transl_table=11 CP098604.1 Genbank gene 3441061 3442053 . + . ID=gene-NDY25_14980;Name=gspK;gbkey=Gene;gene=gspK;gene_biotype=protein_coding;locus_tag=NDY25_14980 CP098604.1 Protein Homology CDS 3441061 3442053 . + 0 ID=cds-UUF01267.1;Parent=gene-NDY25_14980;Dbxref=NCBI_GP:UUF01267.1;Name=UUF01267.1;Ontology_term=GO:0009306,GO:0016021;gbkey=CDS;gene=gspK;go_component=integral component of membrane|0016021||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016900872.1;locus_tag=NDY25_14980;product=type II secretion system minor pseudopilin GspK;protein_id=UUF01267.1;transl_table=11 CP098604.1 Genbank gene 3442050 3443138 . + . ID=gene-NDY25_14985;Name=gspL;gbkey=Gene;gene=gspL;gene_biotype=protein_coding;locus_tag=NDY25_14985 CP098604.1 Protein Homology CDS 3442050 3443138 . + 0 ID=cds-UUF01268.1;Parent=gene-NDY25_14985;Dbxref=NCBI_GP:UUF01268.1;Name=UUF01268.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspL;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166048.1;locus_tag=NDY25_14985;product=type II secretion system protein GspL;protein_id=UUF01268.1;transl_table=11 CP098604.1 Genbank gene 3443135 3443611 . + . ID=gene-NDY25_14990;Name=NDY25_14990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14990 CP098604.1 Protein Homology CDS 3443135 3443611 . + 0 ID=cds-UUF01269.1;Parent=gene-NDY25_14990;Dbxref=NCBI_GP:UUF01269.1;Name=UUF01269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482652.1;locus_tag=NDY25_14990;product=type II secretion system protein M;protein_id=UUF01269.1;transl_table=11 CP098604.1 Genbank gene 3443644 3444327 . + . ID=gene-NDY25_14995;Name=NDY25_14995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_14995 CP098604.1 Protein Homology CDS 3443644 3444327 . + 0 ID=cds-UUF04669.1;Parent=gene-NDY25_14995;Dbxref=NCBI_GP:UUF04669.1;Name=UUF04669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011346376.1;locus_tag=NDY25_14995;product=type II secretion system protein N;protein_id=UUF04669.1;transl_table=11 CP098604.1 Genbank gene 3445054 3447762 . + . ID=gene-NDY25_15000;Name=NDY25_15000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15000 CP098604.1 Protein Homology CDS 3445054 3447762 . + 0 ID=cds-UUF01270.1;Parent=gene-NDY25_15000;Dbxref=NCBI_GP:UUF01270.1;Name=UUF01270.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050492.1;locus_tag=NDY25_15000;product=TonB-dependent receptor;protein_id=UUF01270.1;transl_table=11 CP098604.1 Genbank gene 3447927 3450821 . + . ID=gene-NDY25_15005;Name=NDY25_15005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15005 CP098604.1 Protein Homology CDS 3447927 3450821 . + 0 ID=cds-UUF01271.1;Parent=gene-NDY25_15005;Dbxref=NCBI_GP:UUF01271.1;Name=UUF01271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451298.1;locus_tag=NDY25_15005;product=DUF4982 domain-containing protein;protein_id=UUF01271.1;transl_table=11 CP098604.1 Genbank gene 3450818 3453229 . + . ID=gene-NDY25_15010;Name=NDY25_15010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15010 CP098604.1 Protein Homology CDS 3450818 3453229 . + 0 ID=cds-UUF01272.1;Parent=gene-NDY25_15010;Dbxref=NCBI_GP:UUF01272.1;Name=UUF01272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451299.1;locus_tag=NDY25_15010;product=alpha-N-acetylglucosaminidase;protein_id=UUF01272.1;transl_table=11 CP098604.1 Genbank pseudogene 3453351 3454522 . + . ID=gene-NDY25_15015;Name=NDY25_15015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_15015;pseudo=true CP098604.1 Protein Homology CDS 3453351 3454522 . + 0 ID=cds-NDY25_15015;Parent=gene-NDY25_15015;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911069.1;locus_tag=NDY25_15015;product=heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3454780 3455502 . + . ID=gene-NDY25_15020;Name=NDY25_15020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15020 CP098604.1 Protein Homology CDS 3454780 3455502 . + 0 ID=cds-UUF04670.1;Parent=gene-NDY25_15020;Dbxref=NCBI_GP:UUF04670.1;Name=UUF04670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156688.1;locus_tag=NDY25_15020;product=GntR family transcriptional regulator;protein_id=UUF04670.1;transl_table=11 CP098604.1 Genbank gene 3455548 3456822 . + . ID=gene-NDY25_15025;Name=NDY25_15025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15025 CP098604.1 Protein Homology CDS 3455548 3456822 . + 0 ID=cds-UUF01273.1;Parent=gene-NDY25_15025;Dbxref=NCBI_GP:UUF01273.1;Name=UUF01273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911064.1;locus_tag=NDY25_15025;product=sugar MFS transporter;protein_id=UUF01273.1;transl_table=11 CP098604.1 Genbank gene 3456863 3457930 . + . ID=gene-NDY25_15030;Name=NDY25_15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15030 CP098604.1 Protein Homology CDS 3456863 3457930 . + 0 ID=cds-UUF01274.1;Parent=gene-NDY25_15030;Dbxref=NCBI_GP:UUF01274.1;Name=UUF01274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019338837.1;locus_tag=NDY25_15030;product=LacI family DNA-binding transcriptional regulator;protein_id=UUF01274.1;transl_table=11 CP098604.1 Genbank gene 3457936 3458964 . + . ID=gene-NDY25_15035;Name=NDY25_15035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15035 CP098604.1 Protein Homology CDS 3457936 3458964 . + 0 ID=cds-UUF01275.1;Parent=gene-NDY25_15035;Dbxref=NCBI_GP:UUF01275.1;Name=UUF01275.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995982.1;locus_tag=NDY25_15035;product=SIS domain-containing protein;protein_id=UUF01275.1;transl_table=11 CP098604.1 Genbank gene 3458967 3460121 . + . ID=gene-NDY25_15040;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=NDY25_15040 CP098604.1 Protein Homology CDS 3458967 3460121 . + 0 ID=cds-UUF01276.1;Parent=gene-NDY25_15040;Dbxref=NCBI_GP:UUF01276.1;Name=UUF01276.1;Ontology_term=GO:0006040,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=amino sugar metabolic process|0006040||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995980.1;locus_tag=NDY25_15040;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=UUF01276.1;transl_table=11 CP098604.1 Genbank gene 3460339 3460650 . + . ID=gene-NDY25_15045;Name=NDY25_15045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15045 CP098604.1 GeneMarkS-2+ CDS 3460339 3460650 . + 0 ID=cds-UUF01277.1;Parent=gene-NDY25_15045;Dbxref=NCBI_GP:UUF01277.1;Name=UUF01277.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_15045;product=hypothetical protein;protein_id=UUF01277.1;transl_table=11 CP098604.1 Genbank gene 3460637 3461716 . + . ID=gene-NDY25_15050;Name=NDY25_15050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15050 CP098604.1 Protein Homology CDS 3460637 3461716 . + 0 ID=cds-UUF01278.1;Parent=gene-NDY25_15050;Dbxref=NCBI_GP:UUF01278.1;Name=UUF01278.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015531.2;locus_tag=NDY25_15050;product=S41 family peptidase;protein_id=UUF01278.1;transl_table=11 CP098604.1 Genbank gene 3462350 3465013 . + . ID=gene-NDY25_15055;Name=NDY25_15055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15055 CP098604.1 Protein Homology CDS 3462350 3465013 . + 0 ID=cds-UUF01279.1;Parent=gene-NDY25_15055;Dbxref=NCBI_GP:UUF01279.1;Name=UUF01279.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437396.1;locus_tag=NDY25_15055;product=TonB-dependent receptor;protein_id=UUF01279.1;transl_table=11 CP098604.1 Genbank gene 3465273 3466511 . - . ID=gene-NDY25_15060;Name=NDY25_15060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15060 CP098604.1 Protein Homology CDS 3465273 3466511 . - 0 ID=cds-UUF01280.1;Parent=gene-NDY25_15060;Dbxref=NCBI_GP:UUF01280.1;Name=UUF01280.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,tRNA adenylyltransferase activity|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944403.1;locus_tag=NDY25_15060;product=multifunctional CCA addition/repair protein;protein_id=UUF01280.1;transl_table=11 CP098604.1 Genbank gene 3467232 3469205 . - . ID=gene-NDY25_15065;Name=NDY25_15065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15065 CP098604.1 Protein Homology CDS 3467232 3469205 . - 0 ID=cds-UUF01281.1;Parent=gene-NDY25_15065;Dbxref=NCBI_GP:UUF01281.1;Name=UUF01281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117455.1;locus_tag=NDY25_15065;product=transglycosylase SLT domain-containing protein;protein_id=UUF01281.1;transl_table=11 CP098604.1 Genbank gene 3469476 3472355 . + . ID=gene-NDY25_15070;Name=NDY25_15070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15070 CP098604.1 Protein Homology CDS 3469476 3472355 . + 0 ID=cds-UUF01282.1;Parent=gene-NDY25_15070;Dbxref=NCBI_GP:UUF01282.1;Name=UUF01282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348595.1;locus_tag=NDY25_15070;product=TonB-dependent receptor;protein_id=UUF01282.1;transl_table=11 CP098604.1 Genbank gene 3472850 3473613 . - . ID=gene-NDY25_15075;Name=NDY25_15075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15075 CP098604.1 Protein Homology CDS 3473298 3473613 . - 0 ID=cds-UUF04671.1;Parent=gene-NDY25_15075;Dbxref=NCBI_GP:UUF04671.1;Name=UUF04671.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_15075;product=IS5 family transposase;protein_id=UUF04671.1;transl_table=11 CP098604.1 Protein Homology CDS 3472850 3473298 . - 2 ID=cds-UUF04671.1;Parent=gene-NDY25_15075;Dbxref=NCBI_GP:UUF04671.1;Name=UUF04671.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_15075;product=IS5 family transposase;protein_id=UUF04671.1;transl_table=11 CP098604.1 Genbank gene 3473667 3475337 . - . ID=gene-NDY25_15080;Name=betA;gbkey=Gene;gene=betA;gene_biotype=protein_coding;locus_tag=NDY25_15080 CP098604.1 Protein Homology CDS 3473667 3475337 . - 0 ID=cds-UUF01283.1;Parent=gene-NDY25_15080;Dbxref=NCBI_GP:UUF01283.1;Name=UUF01283.1;Ontology_term=GO:0019285,GO:0008812;gbkey=CDS;gene=betA;go_function=choline dehydrogenase activity|0008812||IEA;go_process=glycine betaine biosynthetic process from choline|0019285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050499.1;locus_tag=NDY25_15080;product=choline dehydrogenase;protein_id=UUF01283.1;transl_table=11 CP098604.1 Genbank gene 3475497 3476969 . - . ID=gene-NDY25_15085;Name=betB;gbkey=Gene;gene=betB;gene_biotype=protein_coding;locus_tag=NDY25_15085 CP098604.1 Protein Homology CDS 3475497 3476969 . - 0 ID=cds-UUF01284.1;Parent=gene-NDY25_15085;Dbxref=NCBI_GP:UUF01284.1;Name=UUF01284.1;Ontology_term=GO:0019285,GO:0008802,GO:0046872;gbkey=CDS;gene=betB;go_function=betaine-aldehyde dehydrogenase activity|0008802||IEA,metal ion binding|0046872||IEA;go_process=glycine betaine biosynthetic process from choline|0019285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269520.1;locus_tag=NDY25_15085;product=betaine-aldehyde dehydrogenase;protein_id=UUF01284.1;transl_table=11 CP098604.1 Genbank gene 3477010 3478989 . - . ID=gene-NDY25_15090;Name=betT;gbkey=Gene;gene=betT;gene_biotype=protein_coding;locus_tag=NDY25_15090 CP098604.1 Protein Homology CDS 3477010 3478989 . - 0 ID=cds-UUF01285.1;Parent=gene-NDY25_15090;Dbxref=NCBI_GP:UUF01285.1;Name=UUF01285.1;Ontology_term=GO:0071705,GO:0022857,GO:0016020;gbkey=CDS;gene=betT;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451628.1;locus_tag=NDY25_15090;product=choline BCCT transporter BetT;protein_id=UUF01285.1;transl_table=11 CP098604.1 Genbank gene 3479126 3479863 . - . ID=gene-NDY25_15095;Name=NDY25_15095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15095 CP098604.1 Protein Homology CDS 3479126 3479863 . - 0 ID=cds-UUF04672.1;Parent=gene-NDY25_15095;Dbxref=NCBI_GP:UUF04672.1;Name=UUF04672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011409416.1;locus_tag=NDY25_15095;product=endonuclease/exonuclease/phosphatase family protein;protein_id=UUF04672.1;transl_table=11 CP098604.1 Genbank gene 3479913 3480728 . - . ID=gene-NDY25_15100;Name=NDY25_15100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15100 CP098604.1 Protein Homology CDS 3479913 3480728 . - 0 ID=cds-UUF01286.1;Parent=gene-NDY25_15100;Dbxref=NCBI_GP:UUF01286.1;Name=UUF01286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089366.1;locus_tag=NDY25_15100;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=UUF01286.1;transl_table=11 CP098604.1 Genbank gene 3480820 3481470 . - . ID=gene-NDY25_15105;Name=NDY25_15105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15105 CP098604.1 Protein Homology CDS 3480820 3481470 . - 0 ID=cds-UUF01287.1;Parent=gene-NDY25_15105;Dbxref=NCBI_GP:UUF01287.1;Name=UUF01287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482610.1;locus_tag=NDY25_15105;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=UUF01287.1;transl_table=11 CP098604.1 Genbank gene 3481564 3482364 . - . ID=gene-NDY25_15110;Name=NDY25_15110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15110 CP098604.1 Protein Homology CDS 3481564 3482364 . - 0 ID=cds-UUF01288.1;Parent=gene-NDY25_15110;Dbxref=NCBI_GP:UUF01288.1;Name=UUF01288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911041.1;locus_tag=NDY25_15110;product=cytochrome c4;protein_id=UUF01288.1;transl_table=11 CP098604.1 Genbank gene 3482509 3483153 . + . ID=gene-NDY25_15115;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=NDY25_15115 CP098604.1 Protein Homology CDS 3482509 3483153 . + 0 ID=cds-UUF01289.1;Parent=gene-NDY25_15115;Dbxref=NCBI_GP:UUF01289.1;Name=UUF01289.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850321.1;locus_tag=NDY25_15115;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=UUF01289.1;transl_table=11 CP098604.1 Genbank gene 3483283 3484263 . - . ID=gene-NDY25_15120;Name=NDY25_15120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15120 CP098604.1 Protein Homology CDS 3483283 3484263 . - 0 ID=cds-UUF01290.1;Parent=gene-NDY25_15120;Dbxref=NCBI_GP:UUF01290.1;Name=UUF01290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472584.1;locus_tag=NDY25_15120;product=MBL fold metallo-hydrolase;protein_id=UUF01290.1;transl_table=11 CP098604.1 Genbank gene 3484368 3485204 . - . ID=gene-NDY25_15125;Name=NDY25_15125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15125 CP098604.1 Protein Homology CDS 3484368 3485204 . - 0 ID=cds-UUF01291.1;Parent=gene-NDY25_15125;Dbxref=NCBI_GP:UUF01291.1;Name=UUF01291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925228.1;locus_tag=NDY25_15125;product=helix-turn-helix transcriptional regulator;protein_id=UUF01291.1;transl_table=11 CP098604.1 Genbank gene 3485570 3486934 . + . ID=gene-NDY25_15130;Name=NDY25_15130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15130 CP098604.1 Protein Homology CDS 3485570 3486934 . + 0 ID=cds-UUF01292.1;Parent=gene-NDY25_15130;Dbxref=NCBI_GP:UUF01292.1;Name=UUF01292.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477658.1;locus_tag=NDY25_15130;product=glutamate--cysteine ligase;protein_id=UUF01292.1;transl_table=11 CP098604.1 Genbank gene 3487183 3488703 . - . ID=gene-NDY25_15135;Name=NDY25_15135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15135 CP098604.1 Protein Homology CDS 3487183 3488703 . - 0 ID=cds-UUF01293.1;Parent=gene-NDY25_15135;Dbxref=NCBI_GP:UUF01293.1;Name=UUF01293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576761.1;locus_tag=NDY25_15135;product=ATP-binding protein;protein_id=UUF01293.1;transl_table=11 CP098604.1 Genbank gene 3488700 3489479 . - . ID=gene-NDY25_15140;Name=NDY25_15140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15140 CP098604.1 Protein Homology CDS 3488700 3489479 . - 0 ID=cds-UUF01294.1;Parent=gene-NDY25_15140;Dbxref=NCBI_GP:UUF01294.1;Name=UUF01294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902620.1;locus_tag=NDY25_15140;product=response regulator transcription factor;protein_id=UUF01294.1;transl_table=11 CP098604.1 Genbank gene 3489557 3490657 . + . ID=gene-NDY25_15145;Name=NDY25_15145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15145 CP098604.1 Protein Homology CDS 3489557 3490657 . + 0 ID=cds-UUF01295.1;Parent=gene-NDY25_15145;Dbxref=NCBI_GP:UUF01295.1;Name=UUF01295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005925236.1;locus_tag=NDY25_15145;product=glycosyltransferase;protein_id=UUF01295.1;transl_table=11 CP098604.1 Genbank gene 3490869 3491177 . + . ID=gene-NDY25_15150;Name=NDY25_15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15150 CP098604.1 Protein Homology CDS 3490869 3491177 . + 0 ID=cds-UUF01296.1;Parent=gene-NDY25_15150;Dbxref=NCBI_GP:UUF01296.1;Name=UUF01296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472582.1;locus_tag=NDY25_15150;product=hypothetical protein;protein_id=UUF01296.1;transl_table=11 CP098604.1 Genbank gene 3491447 3495043 . + . ID=gene-NDY25_15155;Name=NDY25_15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15155 CP098604.1 Protein Homology CDS 3491447 3495043 . + 0 ID=cds-UUF01297.1;Parent=gene-NDY25_15155;Dbxref=NCBI_GP:UUF01297.1;Name=UUF01297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451638.1;locus_tag=NDY25_15155;product=PAS domain S-box protein;protein_id=UUF01297.1;transl_table=11 CP098604.1 Genbank gene 3495324 3495599 . + . ID=gene-NDY25_15160;Name=NDY25_15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15160 CP098604.1 Protein Homology CDS 3495324 3495599 . + 0 ID=cds-UUF01298.1;Parent=gene-NDY25_15160;Dbxref=NCBI_GP:UUF01298.1;Name=UUF01298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384071.1;locus_tag=NDY25_15160;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=UUF01298.1;transl_table=11 CP098604.1 Genbank gene 3495663 3496772 . + . ID=gene-NDY25_15165;Name=NDY25_15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15165 CP098604.1 Protein Homology CDS 3495663 3496772 . + 0 ID=cds-UUF01299.1;Parent=gene-NDY25_15165;Dbxref=NCBI_GP:UUF01299.1;Name=UUF01299.1;Ontology_term=GO:0006113,GO:0009404,GO:0004024,GO:0051903;gbkey=CDS;go_function=alcohol dehydrogenase activity%2C zinc-dependent|0004024||IEA,S-(hydroxymethyl)glutathione dehydrogenase activity|0051903||IEA;go_process=fermentation|0006113||IEA,toxin metabolic process|0009404||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477647.1;locus_tag=NDY25_15165;product=S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase;protein_id=UUF01299.1;transl_table=11 CP098604.1 Genbank gene 3496841 3497416 . + . ID=gene-NDY25_15170;Name=gfa;gbkey=Gene;gene=gfa;gene_biotype=protein_coding;locus_tag=NDY25_15170 CP098604.1 Protein Homology CDS 3496841 3497416 . + 0 ID=cds-UUF01300.1;Parent=gene-NDY25_15170;Dbxref=NCBI_GP:UUF01300.1;Name=UUF01300.1;Ontology_term=GO:0046292,GO:0051907;gbkey=CDS;gene=gfa;go_function=S-(hydroxymethyl)glutathione synthase activity|0051907||IEA;go_process=formaldehyde metabolic process|0046292||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156708.1;locus_tag=NDY25_15170;product=S-(hydroxymethyl)glutathione synthase;protein_id=UUF01300.1;transl_table=11 CP098604.1 Genbank gene 3497475 3498305 . + . ID=gene-NDY25_15175;Name=fghA;gbkey=Gene;gene=fghA;gene_biotype=protein_coding;locus_tag=NDY25_15175 CP098604.1 Protein Homology CDS 3497475 3498305 . + 0 ID=cds-UUF01301.1;Parent=gene-NDY25_15175;Dbxref=NCBI_GP:UUF01301.1;Name=UUF01301.1;Ontology_term=GO:0046292,GO:0018738;gbkey=CDS;gene=fghA;go_function=S-formylglutathione hydrolase activity|0018738||IEA;go_process=formaldehyde metabolic process|0046292||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451642.1;locus_tag=NDY25_15175;product=S-formylglutathione hydrolase;protein_id=UUF01301.1;transl_table=11 CP098604.1 Genbank gene 3498748 3500157 . - . ID=gene-NDY25_15180;Name=NDY25_15180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15180 CP098604.1 Protein Homology CDS 3498748 3500157 . - 0 ID=cds-UUF01302.1;Parent=gene-NDY25_15180;Dbxref=NCBI_GP:UUF01302.1;Name=UUF01302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508938.1;locus_tag=NDY25_15180;product=PLP-dependent aminotransferase family protein;protein_id=UUF01302.1;transl_table=11 CP098604.1 Genbank gene 3500288 3501079 . + . ID=gene-NDY25_15185;Name=NDY25_15185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15185 CP098604.1 Protein Homology CDS 3500288 3501079 . + 0 ID=cds-UUF01303.1;Parent=gene-NDY25_15185;Dbxref=NCBI_GP:UUF01303.1;Name=UUF01303.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004426068.1;locus_tag=NDY25_15185;product=PhzF family phenazine biosynthesis protein;protein_id=UUF01303.1;transl_table=11 CP098604.1 Genbank gene 3501076 3502002 . + . ID=gene-NDY25_15190;Name=NDY25_15190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15190 CP098604.1 Protein Homology CDS 3501076 3502002 . + 0 ID=cds-UUF01304.1;Parent=gene-NDY25_15190;Dbxref=NCBI_GP:UUF01304.1;Name=UUF01304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448760.1;locus_tag=NDY25_15190;product=DMT family transporter;protein_id=UUF01304.1;transl_table=11 CP098604.1 Genbank gene 3502044 3502382 . - . ID=gene-NDY25_15195;Name=NDY25_15195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15195 CP098604.1 Protein Homology CDS 3502044 3502382 . - 0 ID=cds-UUF01305.1;Parent=gene-NDY25_15195;Dbxref=NCBI_GP:UUF01305.1;Name=UUF01305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299887.1;locus_tag=NDY25_15195;product=hypothetical protein;protein_id=UUF01305.1;transl_table=11 CP098604.1 Genbank pseudogene 3503359 3504301 . - . ID=gene-NDY25_15200;Name=NDY25_15200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_15200;pseudo=true CP098604.1 Protein Homology CDS 3503359 3504301 . - 0 ID=cds-NDY25_15200;Parent=gene-NDY25_15200;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157525.1;locus_tag=NDY25_15200;product=DegV family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3504788 3505603 . + . ID=gene-NDY25_15205;Name=NDY25_15205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15205 CP098604.1 Protein Homology CDS 3504788 3505603 . + 0 ID=cds-UUF01306.1;Parent=gene-NDY25_15205;Dbxref=NCBI_GP:UUF01306.1;Name=UUF01306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171825.1;locus_tag=NDY25_15205;product=cellulase;protein_id=UUF01306.1;transl_table=11 CP098604.1 Genbank gene 3505893 3506639 . + . ID=gene-NDY25_15210;Name=NDY25_15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15210 CP098604.1 Protein Homology CDS 3505893 3506639 . + 0 ID=cds-UUF04673.1;Parent=gene-NDY25_15210;Dbxref=NCBI_GP:UUF04673.1;Name=UUF04673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365555.1;locus_tag=NDY25_15210;product=cellulase;protein_id=UUF04673.1;transl_table=11 CP098604.1 Genbank gene 3506842 3508449 . - . ID=gene-NDY25_15215;Name=NDY25_15215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15215 CP098604.1 Protein Homology CDS 3506842 3508449 . - 0 ID=cds-UUF01307.1;Parent=gene-NDY25_15215;Dbxref=NCBI_GP:UUF01307.1;Name=UUF01307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303680.1;locus_tag=NDY25_15215;product=polysaccharide lyase family protein;protein_id=UUF01307.1;transl_table=11 CP098604.1 Genbank gene 3508657 3508983 . - . ID=gene-NDY25_15220;Name=NDY25_15220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15220 CP098604.1 Protein Homology CDS 3508657 3508983 . - 0 ID=cds-UUF04674.1;Parent=gene-NDY25_15220;Dbxref=NCBI_GP:UUF04674.1;Name=UUF04674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162724.1;locus_tag=NDY25_15220;product=hypothetical protein;protein_id=UUF04674.1;transl_table=11 CP098604.1 Genbank gene 3509122 3509535 . - . ID=gene-NDY25_15225;Name=NDY25_15225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15225 CP098604.1 Protein Homology CDS 3509122 3509535 . - 0 ID=cds-UUF01308.1;Parent=gene-NDY25_15225;Dbxref=NCBI_GP:UUF01308.1;Name=UUF01308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508930.1;locus_tag=NDY25_15225;product=DUF2809 domain-containing protein;protein_id=UUF01308.1;transl_table=11 CP098604.1 Genbank gene 3509690 3510970 . - . ID=gene-NDY25_15230;Name=NDY25_15230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15230 CP098604.1 Protein Homology CDS 3509690 3510970 . - 0 ID=cds-UUF01309.1;Parent=gene-NDY25_15230;Dbxref=NCBI_GP:UUF01309.1;Name=UUF01309.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913553.1;locus_tag=NDY25_15230;product=amidohydrolase family protein;protein_id=UUF01309.1;transl_table=11 CP098604.1 Genbank gene 3510967 3512364 . - . ID=gene-NDY25_15235;Name=NDY25_15235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15235 CP098604.1 Protein Homology CDS 3510967 3512364 . - 0 ID=cds-UUF01310.1;Parent=gene-NDY25_15235;Dbxref=NCBI_GP:UUF01310.1;Name=UUF01310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972236.1;locus_tag=NDY25_15235;product=amidohydrolase;protein_id=UUF01310.1;transl_table=11 CP098604.1 Genbank gene 3512505 3513065 . + . ID=gene-NDY25_15240;Name=NDY25_15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15240 CP098604.1 Protein Homology CDS 3512505 3513065 . + 0 ID=cds-UUF01311.1;Parent=gene-NDY25_15240;Dbxref=NCBI_GP:UUF01311.1;Name=UUF01311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112270.1;locus_tag=NDY25_15240;product=DUF924 family protein;protein_id=UUF01311.1;transl_table=11 CP098604.1 Genbank gene 3513507 3514433 . - . ID=gene-NDY25_15245;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=NDY25_15245 CP098604.1 Protein Homology CDS 3513507 3514433 . - 0 ID=cds-UUF01312.1;Parent=gene-NDY25_15245;Dbxref=NCBI_GP:UUF01312.1;Name=UUF01312.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913558.1;locus_tag=NDY25_15245;product=Grx4 family monothiol glutaredoxin;protein_id=UUF01312.1;transl_table=11 CP098604.1 Genbank gene 3514494 3515270 . + . ID=gene-NDY25_15250;Name=NDY25_15250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15250 CP098604.1 Protein Homology CDS 3514494 3515270 . + 0 ID=cds-UUF01313.1;Parent=gene-NDY25_15250;Dbxref=NCBI_GP:UUF01313.1;Name=UUF01313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993124.1;locus_tag=NDY25_15250;product=polysaccharide deacetylase family protein;protein_id=UUF01313.1;transl_table=11 CP098604.1 Genbank gene 3515675 3517864 . + . ID=gene-NDY25_15255;Name=NDY25_15255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15255 CP098604.1 Protein Homology CDS 3515675 3517864 . + 0 ID=cds-UUF01314.1;Parent=gene-NDY25_15255;Dbxref=NCBI_GP:UUF01314.1;Name=UUF01314.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902301.1;locus_tag=NDY25_15255;product=TonB-dependent siderophore receptor;protein_id=UUF01314.1;transl_table=11 CP098604.1 Genbank gene 3518564 3518639 . + . ID=gene-NDY25_15260;Name=NDY25_15260;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_15260 CP098604.1 cmsearch ncRNA 3518564 3518639 . + . ID=rna-NDY25_15260;Parent=gene-NDY25_15260;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15260;product=sX9 sRNA CP098604.1 cmsearch exon 3518564 3518639 . + . ID=exon-NDY25_15260-1;Parent=rna-NDY25_15260;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15260;product=sX9 sRNA CP098604.1 Genbank pseudogene 3518677 3519345 . - . ID=gene-NDY25_15265;Name=NDY25_15265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_15265;pseudo=true CP098604.1 Protein Homology CDS 3518677 3519345 . - 0 ID=cds-NDY25_15265;Parent=gene-NDY25_15265;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038464.1;locus_tag=NDY25_15265;product=class I SAM-dependent methyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3519402 3520025 . - . ID=gene-NDY25_15270;Name=NDY25_15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15270 CP098604.1 Protein Homology CDS 3519402 3520025 . - 0 ID=cds-UUF01315.1;Parent=gene-NDY25_15270;Dbxref=NCBI_GP:UUF01315.1;Name=UUF01315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449297.1;locus_tag=NDY25_15270;product=SGNH/GDSL hydrolase family protein;protein_id=UUF01315.1;transl_table=11 CP098604.1 Genbank gene 3520025 3521296 . - . ID=gene-NDY25_15275;Name=NDY25_15275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15275 CP098604.1 Protein Homology CDS 3520025 3521296 . - 0 ID=cds-UUF01316.1;Parent=gene-NDY25_15275;Dbxref=NCBI_GP:UUF01316.1;Name=UUF01316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902304.1;locus_tag=NDY25_15275;product=pyridoxal phosphate-dependent aminotransferase;protein_id=UUF01316.1;transl_table=11 CP098604.1 Genbank gene 3521450 3522541 . + . ID=gene-NDY25_15280;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=NDY25_15280 CP098604.1 Protein Homology CDS 3521450 3522541 . + 0 ID=cds-UUF01317.1;Parent=gene-NDY25_15280;Dbxref=NCBI_GP:UUF01317.1;Name=UUF01317.1;Ontology_term=GO:0006412,GO:0005525,GO:0043022;gbkey=CDS;gene=rsgA;go_function=GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038460.1;locus_tag=NDY25_15280;product=ribosome small subunit-dependent GTPase A;protein_id=UUF01317.1;transl_table=11 CP098604.1 Genbank gene 3522543 3523805 . + . ID=gene-NDY25_15285;Name=NDY25_15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15285 CP098604.1 Protein Homology CDS 3522543 3523805 . + 0 ID=cds-UUF01318.1;Parent=gene-NDY25_15285;Dbxref=NCBI_GP:UUF01318.1;Name=UUF01318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365514.1;locus_tag=NDY25_15285;product=flavohemoglobin expression-modulating QEGLA motif protein;protein_id=UUF01318.1;transl_table=11 CP098604.1 Genbank gene 3523929 3524002 . + . ID=gene-NDY25_15290;Name=NDY25_15290;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_15290 CP098604.1 cmsearch ncRNA 3523929 3524002 . + . ID=rna-NDY25_15290;Parent=gene-NDY25_15290;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15290;product=sX9 sRNA CP098604.1 cmsearch exon 3523929 3524002 . + . ID=exon-NDY25_15290-1;Parent=rna-NDY25_15290;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15290;product=sX9 sRNA CP098604.1 Genbank gene 3524177 3524857 . + . ID=gene-NDY25_15295;Name=NDY25_15295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15295 CP098604.1 Protein Homology CDS 3524177 3524857 . + 0 ID=cds-UUF01319.1;Parent=gene-NDY25_15295;Dbxref=NCBI_GP:UUF01319.1;Name=UUF01319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157539.1;locus_tag=NDY25_15295;product=type 1 glutamine amidotransferase domain-containing protein;protein_id=UUF01319.1;transl_table=11 CP098604.1 Genbank gene 3524922 3524998 . - . ID=gene-NDY25_15300;Name=NDY25_15300;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_15300 CP098604.1 cmsearch ncRNA 3524922 3524998 . - . ID=rna-NDY25_15300;Parent=gene-NDY25_15300;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15300;product=sX9 sRNA CP098604.1 cmsearch exon 3524922 3524998 . - . ID=exon-NDY25_15300-1;Parent=rna-NDY25_15300;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15300;product=sX9 sRNA CP098604.1 Genbank gene 3525347 3527266 . - . ID=gene-NDY25_15305;Name=NDY25_15305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15305 CP098604.1 Protein Homology CDS 3525347 3527266 . - 0 ID=cds-UUF01320.1;Parent=gene-NDY25_15305;Dbxref=NCBI_GP:UUF01320.1;Name=UUF01320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365510.1;locus_tag=NDY25_15305;product=alpha-amylase family protein;protein_id=UUF01320.1;transl_table=11 CP098604.1 Genbank gene 3527301 3529754 . - . ID=gene-NDY25_15310;Name=NDY25_15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15310 CP098604.1 Protein Homology CDS 3527301 3529754 . - 0 ID=cds-UUF01321.1;Parent=gene-NDY25_15310;Dbxref=NCBI_GP:UUF01321.1;Name=UUF01321.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174521.1;locus_tag=NDY25_15310;product=TonB-dependent receptor;protein_id=UUF01321.1;transl_table=11 CP098604.1 Genbank gene 3530022 3531341 . + . ID=gene-NDY25_15315;Name=NDY25_15315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15315 CP098604.1 Protein Homology CDS 3530022 3531341 . + 0 ID=cds-UUF01322.1;Parent=gene-NDY25_15315;Dbxref=NCBI_GP:UUF01322.1;Name=UUF01322.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849121.1;locus_tag=NDY25_15315;product=MFS transporter;protein_id=UUF01322.1;transl_table=11 CP098604.1 Genbank gene 3531830 3532861 . - . ID=gene-NDY25_15320;Name=NDY25_15320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15320 CP098604.1 Protein Homology CDS 3531830 3532861 . - 0 ID=cds-UUF01323.1;Parent=gene-NDY25_15320;Dbxref=NCBI_GP:UUF01323.1;Name=UUF01323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005932772.1;locus_tag=NDY25_15320;product=LacI family DNA-binding transcriptional regulator;protein_id=UUF01323.1;transl_table=11 CP098604.1 Genbank gene 3533099 3533839 . - . ID=gene-NDY25_15325;Name=phbB;gbkey=Gene;gene=phbB;gene_biotype=protein_coding;locus_tag=NDY25_15325 CP098604.1 Protein Homology CDS 3533099 3533839 . - 0 ID=cds-UUF01324.1;Parent=gene-NDY25_15325;Dbxref=NCBI_GP:UUF01324.1;Name=UUF01324.1;Ontology_term=GO:0042619,GO:0018454;gbkey=CDS;gene=phbB;go_function=acetoacetyl-CoA reductase activity|0018454||IEA;go_process=poly-hydroxybutyrate biosynthetic process|0042619||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006391443.1;locus_tag=NDY25_15325;product=acetoacetyl-CoA reductase;protein_id=UUF01324.1;transl_table=11 CP098604.1 Genbank gene 3534013 3535341 . - . ID=gene-NDY25_15330;Name=NDY25_15330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15330 CP098604.1 Protein Homology CDS 3534013 3535341 . - 0 ID=cds-UUF01325.1;Parent=gene-NDY25_15330;Dbxref=NCBI_GP:UUF01325.1;Name=UUF01325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483418.1;locus_tag=NDY25_15330;product=CitMHS family transporter;protein_id=UUF01325.1;transl_table=11 CP098604.1 Genbank gene 3535456 3536649 . - . ID=gene-NDY25_15335;Name=NDY25_15335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15335 CP098604.1 Protein Homology CDS 3535456 3536649 . - 0 ID=cds-UUF01326.1;Parent=gene-NDY25_15335;Dbxref=NCBI_GP:UUF01326.1;Name=UUF01326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157498.1;locus_tag=NDY25_15335;product=porin;protein_id=UUF01326.1;transl_table=11 CP098604.1 Genbank gene 3536927 3537628 . + . ID=gene-NDY25_15340;Name=NDY25_15340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15340 CP098604.1 Protein Homology CDS 3536927 3537628 . + 0 ID=cds-UUF01327.1;Parent=gene-NDY25_15340;Dbxref=NCBI_GP:UUF01327.1;Name=UUF01327.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163399.1;locus_tag=NDY25_15340;product=response regulator;protein_id=UUF01327.1;transl_table=11 CP098604.1 Genbank gene 3537621 3539006 . + . ID=gene-NDY25_15345;Name=NDY25_15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15345 CP098604.1 Protein Homology CDS 3537621 3539006 . + 0 ID=cds-UUF01328.1;Parent=gene-NDY25_15345;Dbxref=NCBI_GP:UUF01328.1;Name=UUF01328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453222.1;locus_tag=NDY25_15345;product=sensor histidine kinase N-terminal domain-containing protein;protein_id=UUF01328.1;transl_table=11 CP098604.1 Genbank gene 3539006 3540055 . + . ID=gene-NDY25_15350;Name=NDY25_15350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15350 CP098604.1 Protein Homology CDS 3539006 3540055 . + 0 ID=cds-UUF01329.1;Parent=gene-NDY25_15350;Dbxref=NCBI_GP:UUF01329.1;Name=UUF01329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483407.1;locus_tag=NDY25_15350;product=ABC transporter substrate-binding protein;protein_id=UUF01329.1;transl_table=11 CP098604.1 Genbank gene 3540246 3540884 . + . ID=gene-NDY25_15355;Name=NDY25_15355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15355 CP098604.1 Protein Homology CDS 3540246 3540884 . + 0 ID=cds-UUF01330.1;Parent=gene-NDY25_15355;Dbxref=NCBI_GP:UUF01330.1;Name=UUF01330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257949.1;locus_tag=NDY25_15355;product=response regulator transcription factor;protein_id=UUF01330.1;transl_table=11 CP098604.1 Genbank gene 3540999 3543119 . - . ID=gene-NDY25_15360;Name=NDY25_15360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15360 CP098604.1 Protein Homology CDS 3540999 3543119 . - 0 ID=cds-UUF01331.1;Parent=gene-NDY25_15360;Dbxref=NCBI_GP:UUF01331.1;Name=UUF01331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449796.1;locus_tag=NDY25_15360;product=TonB-dependent receptor;protein_id=UUF01331.1;transl_table=11 CP098604.1 Genbank gene 3543482 3544384 . + . ID=gene-NDY25_15365;Name=NDY25_15365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15365 CP098604.1 Protein Homology CDS 3543482 3544384 . + 0 ID=cds-UUF01332.1;Parent=gene-NDY25_15365;Dbxref=NCBI_GP:UUF01332.1;Name=UUF01332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159489.1;locus_tag=NDY25_15365;product=LysR family transcriptional regulator;protein_id=UUF01332.1;transl_table=11 CP098604.1 Genbank gene 3544376 3545143 . - . ID=gene-NDY25_15370;Name=NDY25_15370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15370 CP098604.1 Protein Homology CDS 3544376 3545143 . - 0 ID=cds-UUF04675.1;Parent=gene-NDY25_15370;Dbxref=NCBI_GP:UUF04675.1;Name=UUF04675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157489.1;locus_tag=NDY25_15370;product=substrate-binding domain-containing protein;protein_id=UUF04675.1;transl_table=11 CP098604.1 Genbank gene 3545152 3546501 . - . ID=gene-NDY25_15375;Name=NDY25_15375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15375 CP098604.1 Protein Homology CDS 3545152 3546501 . - 0 ID=cds-UUF01333.1;Parent=gene-NDY25_15375;Dbxref=NCBI_GP:UUF01333.1;Name=UUF01333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157488.1;locus_tag=NDY25_15375;product=MFS transporter;protein_id=UUF01333.1;transl_table=11 CP098604.1 Genbank gene 3546715 3547635 . - . ID=gene-NDY25_15380;Name=NDY25_15380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15380 CP098604.1 Protein Homology CDS 3546715 3547635 . - 0 ID=cds-UUF01334.1;Parent=gene-NDY25_15380;Dbxref=NCBI_GP:UUF01334.1;Name=UUF01334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449795.1;locus_tag=NDY25_15380;product=DUF1460 domain-containing protein;protein_id=UUF01334.1;transl_table=11 CP098604.1 Genbank gene 3547670 3550315 . - . ID=gene-NDY25_15385;Name=NDY25_15385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15385 CP098604.1 Protein Homology CDS 3547670 3550315 . - 0 ID=cds-UUF01335.1;Parent=gene-NDY25_15385;Dbxref=NCBI_GP:UUF01335.1;Name=UUF01335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160257.1;locus_tag=NDY25_15385;product=PAS-domain containing protein;protein_id=UUF01335.1;transl_table=11 CP098604.1 Genbank gene 3550554 3551726 . - . ID=gene-NDY25_15390;Name=NDY25_15390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15390 CP098604.1 Protein Homology CDS 3550554 3551726 . - 0 ID=cds-UUF01336.1;Parent=gene-NDY25_15390;Dbxref=NCBI_GP:UUF01336.1;Name=UUF01336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964505.1;locus_tag=NDY25_15390;product=porin;protein_id=UUF01336.1;transl_table=11 CP098604.1 Genbank gene 3552013 3553359 . + . ID=gene-NDY25_15395;Name=NDY25_15395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15395 CP098604.1 Protein Homology CDS 3552013 3553359 . + 0 ID=cds-UUF01337.1;Parent=gene-NDY25_15395;Dbxref=NCBI_GP:UUF01337.1;Name=UUF01337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038444.1;locus_tag=NDY25_15395;product=dicarboxylate/amino acid:cation symporter;protein_id=UUF01337.1;transl_table=11 CP098604.1 Genbank gene 3553559 3555868 . + . ID=gene-NDY25_15400;Name=NDY25_15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15400 CP098604.1 Protein Homology CDS 3553559 3555868 . + 0 ID=cds-UUF01338.1;Parent=gene-NDY25_15400;Dbxref=NCBI_GP:UUF01338.1;Name=UUF01338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449791.1;locus_tag=NDY25_15400;product=NADP-dependent malic enzyme;protein_id=UUF01338.1;transl_table=11 CP098604.1 Genbank gene 3556350 3559748 . - . ID=gene-NDY25_15405;Name=NDY25_15405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15405 CP098604.1 Protein Homology CDS 3556350 3559748 . - 0 ID=cds-UUF01339.1;Parent=gene-NDY25_15405;Dbxref=NCBI_GP:UUF01339.1;Name=UUF01339.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172308.1;locus_tag=NDY25_15405;product=GH92 family glycosyl hydrolase;protein_id=UUF01339.1;transl_table=11 CP098604.1 Genbank gene 3560089 3560286 . + . ID=gene-NDY25_15410;Name=NDY25_15410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15410 CP098604.1 Protein Homology CDS 3560089 3560286 . + 0 ID=cds-UUF01340.1;Parent=gene-NDY25_15410;Dbxref=NCBI_GP:UUF01340.1;Name=UUF01340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483377.1;locus_tag=NDY25_15410;product=zinc-finger domain-containing protein;protein_id=UUF01340.1;transl_table=11 CP098604.1 Genbank gene 3560297 3561409 . + . ID=gene-NDY25_15415;Name=NDY25_15415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15415 CP098604.1 Protein Homology CDS 3560297 3561409 . + 0 ID=cds-UUF01341.1;Parent=gene-NDY25_15415;Dbxref=NCBI_GP:UUF01341.1;Name=UUF01341.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483375.1;locus_tag=NDY25_15415;product=glycosyltransferase;protein_id=UUF01341.1;transl_table=11 CP098604.1 Genbank gene 3561390 3562724 . + . ID=gene-NDY25_15420;Name=NDY25_15420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15420 CP098604.1 Protein Homology CDS 3561390 3562724 . + 0 ID=cds-UUF01342.1;Parent=gene-NDY25_15420;Dbxref=NCBI_GP:UUF01342.1;Name=UUF01342.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011257795.1;locus_tag=NDY25_15420;product=O-antigen ligase family protein;protein_id=UUF01342.1;transl_table=11 CP098604.1 Genbank gene 3562916 3563836 . - . ID=gene-NDY25_15425;Name=NDY25_15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15425 CP098604.1 Protein Homology CDS 3562916 3563836 . - 0 ID=cds-UUF01343.1;Parent=gene-NDY25_15425;Dbxref=NCBI_GP:UUF01343.1;Name=UUF01343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967748.1;locus_tag=NDY25_15425;product=LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase;protein_id=UUF01343.1;transl_table=11 CP098604.1 Genbank gene 3563913 3565229 . + . ID=gene-NDY25_15430;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=NDY25_15430 CP098604.1 Protein Homology CDS 3563913 3565229 . + 0 ID=cds-UUF01344.1;Parent=gene-NDY25_15430;Dbxref=NCBI_GP:UUF01344.1;Name=UUF01344.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573684.1;locus_tag=NDY25_15430;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=UUF01344.1;transl_table=11 CP098604.1 Genbank gene 3565849 3567222 . - . ID=gene-NDY25_15435;Name=NDY25_15435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15435 CP098604.1 Protein Homology CDS 3565849 3567222 . - 0 ID=cds-UUF01345.1;Parent=gene-NDY25_15435;Dbxref=NCBI_GP:UUF01345.1;Name=UUF01345.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364366.1;locus_tag=NDY25_15435;product=TolC family outer membrane protein;protein_id=UUF01345.1;transl_table=11 CP098604.1 Genbank gene 3567243 3567899 . - . ID=gene-NDY25_15440;Name=NDY25_15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15440 CP098604.1 Protein Homology CDS 3567243 3567899 . - 0 ID=cds-UUF01346.1;Parent=gene-NDY25_15440;Dbxref=NCBI_GP:UUF01346.1;Name=UUF01346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804883.1;locus_tag=NDY25_15440;product=protein-L-isoaspartate O-methyltransferase;protein_id=UUF01346.1;transl_table=11 CP098604.1 Genbank gene 3568028 3568681 . - . ID=gene-NDY25_15445;Name=NDY25_15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15445 CP098604.1 Protein Homology CDS 3568028 3568681 . - 0 ID=cds-UUF01347.1;Parent=gene-NDY25_15445;Dbxref=NCBI_GP:UUF01347.1;Name=UUF01347.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167389.1;locus_tag=NDY25_15445;product=TetR/AcrR family transcriptional regulator;protein_id=UUF01347.1;transl_table=11 CP098604.1 Genbank gene 3568968 3571982 . + . ID=gene-NDY25_15450;Name=NDY25_15450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15450 CP098604.1 Protein Homology CDS 3568968 3571982 . + 0 ID=cds-UUF01348.1;Parent=gene-NDY25_15450;Dbxref=NCBI_GP:UUF01348.1;Name=UUF01348.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508891.1;locus_tag=NDY25_15450;product=diguanylate cyclase;protein_id=UUF01348.1;transl_table=11 CP098604.1 Genbank gene 3571986 3572870 . - . ID=gene-NDY25_15455;Name=NDY25_15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15455 CP098604.1 Protein Homology CDS 3571986 3572870 . - 0 ID=cds-UUF01349.1;Parent=gene-NDY25_15455;Dbxref=NCBI_GP:UUF01349.1;Name=UUF01349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117063.1;locus_tag=NDY25_15455;product=LysR family transcriptional regulator;protein_id=UUF01349.1;transl_table=11 CP098604.1 Genbank gene 3572990 3574438 . + . ID=gene-NDY25_15460;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=NDY25_15460 CP098604.1 Protein Homology CDS 3572990 3574438 . + 0 ID=cds-UUF01350.1;Parent=gene-NDY25_15460;Dbxref=NCBI_GP:UUF01350.1;Name=UUF01350.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014091005.1;locus_tag=NDY25_15460;product=3-isopropylmalate dehydratase large subunit;protein_id=UUF01350.1;transl_table=11 CP098604.1 Genbank gene 3574505 3575152 . + . ID=gene-NDY25_15465;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=NDY25_15465 CP098604.1 Protein Homology CDS 3574505 3575152 . + 0 ID=cds-UUF01351.1;Parent=gene-NDY25_15465;Dbxref=NCBI_GP:UUF01351.1;Name=UUF01351.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301096.1;locus_tag=NDY25_15465;product=3-isopropylmalate dehydratase small subunit;protein_id=UUF01351.1;transl_table=11 CP098604.1 Genbank gene 3575149 3575934 . + . ID=gene-NDY25_15470;Name=NDY25_15470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15470 CP098604.1 Protein Homology CDS 3575149 3575934 . + 0 ID=cds-UUF01352.1;Parent=gene-NDY25_15470;Dbxref=NCBI_GP:UUF01352.1;Name=UUF01352.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451160.1;locus_tag=NDY25_15470;product=methyltransferase domain-containing protein;protein_id=UUF01352.1;transl_table=11 CP098604.1 Genbank gene 3575972 3577045 . + . ID=gene-NDY25_15475;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=NDY25_15475 CP098604.1 Protein Homology CDS 3575972 3577045 . + 0 ID=cds-UUF01353.1;Parent=gene-NDY25_15475;Dbxref=NCBI_GP:UUF01353.1;Name=UUF01353.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912018.1;locus_tag=NDY25_15475;product=3-isopropylmalate dehydrogenase;protein_id=UUF01353.1;transl_table=11 CP098604.1 Genbank gene 3577746 3579308 . - . ID=gene-NDY25_15480;Name=NDY25_15480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15480 CP098604.1 Protein Homology CDS 3577746 3579308 . - 0 ID=cds-UUF01354.1;Parent=gene-NDY25_15480;Dbxref=NCBI_GP:UUF01354.1;Name=UUF01354.1;Ontology_term=GO:0009098,GO:0019752,GO:0003852;gbkey=CDS;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=leucine biosynthetic process|0009098||IEA,carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156818.1;locus_tag=NDY25_15480;product=2-isopropylmalate synthase;protein_id=UUF01354.1;transl_table=11 CP098604.1 Genbank gene 3579305 3580375 . - . ID=gene-NDY25_15485;Name=NDY25_15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15485 CP098604.1 Protein Homology CDS 3579305 3580375 . - 0 ID=cds-UUF04676.1;Parent=gene-NDY25_15485;Dbxref=NCBI_GP:UUF04676.1;Name=UUF04676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005912014.1;locus_tag=NDY25_15485;product=threonine dehydratase;protein_id=UUF04676.1;transl_table=11 CP098604.1 Genbank gene 3580514 3580771 . - . ID=gene-NDY25_15490;Name=NDY25_15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15490 CP098604.1 Protein Homology CDS 3580514 3580771 . - 0 ID=cds-UUF01355.1;Parent=gene-NDY25_15490;Dbxref=NCBI_GP:UUF01355.1;Name=UUF01355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504505.1;locus_tag=NDY25_15490;product=acetolactate synthase;protein_id=UUF01355.1;transl_table=11 CP098604.1 Genbank gene 3580755 3582476 . - . ID=gene-NDY25_15495;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=NDY25_15495 CP098604.1 Protein Homology CDS 3580755 3582476 . - 0 ID=cds-UUF01356.1;Parent=gene-NDY25_15495;Dbxref=NCBI_GP:UUF01356.1;Name=UUF01356.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002804901.1;locus_tag=NDY25_15495;product=acetolactate synthase 2 catalytic subunit;protein_id=UUF01356.1;transl_table=11 CP098604.1 Genbank gene 3582519 3583520 . - . ID=gene-NDY25_15500;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=NDY25_15500 CP098604.1 Protein Homology CDS 3582519 3583520 . - 0 ID=cds-UUF01357.1;Parent=gene-NDY25_15500;Dbxref=NCBI_GP:UUF01357.1;Name=UUF01357.1;gbkey=CDS;gene=ilvC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504503.1;locus_tag=NDY25_15500;product=ketol-acid reductoisomerase;protein_id=UUF01357.1;transl_table=11 CP098604.1 Genbank gene 3584166 3585875 . + . ID=gene-NDY25_15505;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=NDY25_15505 CP098604.1 Protein Homology CDS 3584166 3585875 . + 0 ID=cds-UUF01358.1;Parent=gene-NDY25_15505;Dbxref=NCBI_GP:UUF01358.1;Name=UUF01358.1;Ontology_term=GO:0006750;gbkey=CDS;gene=ggt;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052288.1;locus_tag=NDY25_15505;product=gamma-glutamyltransferase;protein_id=UUF01358.1;transl_table=11 CP098604.1 Genbank gene 3585956 3587794 . + . ID=gene-NDY25_15510;Name=NDY25_15510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15510 CP098604.1 Protein Homology CDS 3585956 3587794 . + 0 ID=cds-UUF01359.1;Parent=gene-NDY25_15510;Dbxref=NCBI_GP:UUF01359.1;Name=UUF01359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967728.1;locus_tag=NDY25_15510;product=methyl-accepting chemotaxis protein;protein_id=UUF01359.1;transl_table=11 CP098604.1 Genbank gene 3588065 3590836 . - . ID=gene-NDY25_15515;Name=NDY25_15515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15515 CP098604.1 Protein Homology CDS 3588065 3590836 . - 0 ID=cds-UUF04677.1;Parent=gene-NDY25_15515;Dbxref=NCBI_GP:UUF04677.1;Name=UUF04677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173610.1;locus_tag=NDY25_15515;product=TonB-dependent receptor;protein_id=UUF04677.1;transl_table=11 CP098604.1 cmsearch riboswitch 3591141 3591238 . + . ID=id-CP098604.1:3591141..3591238;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 3591354 3593231 . + . ID=gene-NDY25_15520;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=NDY25_15520 CP098604.1 Protein Homology CDS 3591354 3593231 . + 0 ID=cds-UUF01360.1;Parent=gene-NDY25_15520;Dbxref=NCBI_GP:UUF01360.1;Name=UUF01360.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407693.1;locus_tag=NDY25_15520;product=phosphomethylpyrimidine synthase ThiC;protein_id=UUF01360.1;transl_table=11 CP098604.1 Genbank gene 3593656 3595992 . + . ID=gene-NDY25_15525;Name=NDY25_15525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15525 CP098604.1 Protein Homology CDS 3593656 3595992 . + 0 ID=cds-UUF01361.1;Parent=gene-NDY25_15525;Dbxref=NCBI_GP:UUF01361.1;Name=UUF01361.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364401.1;locus_tag=NDY25_15525;product=winged helix-turn-helix domain-containing protein;protein_id=UUF01361.1;transl_table=11 CP098604.1 Genbank gene 3596103 3596996 . + . ID=gene-NDY25_15530;Name=NDY25_15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15530 CP098604.1 Protein Homology CDS 3596103 3596996 . + 0 ID=cds-UUF01362.1;Parent=gene-NDY25_15530;Dbxref=NCBI_GP:UUF01362.1;Name=UUF01362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573718.1;locus_tag=NDY25_15530;product=AraC family transcriptional regulator;protein_id=UUF01362.1;transl_table=11 CP098604.1 Genbank gene 3597045 3599933 . + . ID=gene-NDY25_15535;Name=NDY25_15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15535 CP098604.1 Protein Homology CDS 3597045 3599933 . + 0 ID=cds-UUF01363.1;Parent=gene-NDY25_15535;Dbxref=NCBI_GP:UUF01363.1;Name=UUF01363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990845.1;locus_tag=NDY25_15535;product=TonB-dependent receptor;protein_id=UUF01363.1;transl_table=11 CP098604.1 Genbank gene 3600258 3601406 . - . ID=gene-NDY25_15540;Name=NDY25_15540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15540 CP098604.1 Protein Homology CDS 3600258 3601406 . - 0 ID=cds-UUF01364.1;Parent=gene-NDY25_15540;Dbxref=NCBI_GP:UUF01364.1;Name=UUF01364.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504498.1;locus_tag=NDY25_15540;product=HDOD domain-containing protein;protein_id=UUF01364.1;transl_table=11 CP098604.1 Genbank gene 3601520 3602056 . - . ID=gene-NDY25_15545;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=NDY25_15545 CP098604.1 Protein Homology CDS 3601520 3602056 . - 0 ID=cds-UUF01365.1;Parent=gene-NDY25_15545;Dbxref=NCBI_GP:UUF01365.1;Name=UUF01365.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183821.1;locus_tag=NDY25_15545;product=inorganic diphosphatase;protein_id=UUF01365.1;transl_table=11 CP098604.1 Genbank gene 3602253 3602735 . + . ID=gene-NDY25_15550;Name=NDY25_15550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15550 CP098604.1 Protein Homology CDS 3602253 3602735 . + 0 ID=cds-UUF01366.1;Parent=gene-NDY25_15550;Dbxref=NCBI_GP:UUF01366.1;Name=UUF01366.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158947.1;locus_tag=NDY25_15550;product=hypothetical protein;protein_id=UUF01366.1;transl_table=11 CP098604.1 Genbank gene 3602931 3604958 . - . ID=gene-NDY25_15555;Name=NDY25_15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15555 CP098604.1 Protein Homology CDS 3602931 3604958 . - 0 ID=cds-UUF01367.1;Parent=gene-NDY25_15555;Dbxref=NCBI_GP:UUF01367.1;Name=UUF01367.1;Ontology_term=GO:1902600,GO:0009678;gbkey=CDS;go_function=pyrophosphate hydrolysis-driven proton transmembrane transporter activity|0009678||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038412.1;locus_tag=NDY25_15555;product=sodium-translocating pyrophosphatase;protein_id=UUF01367.1;transl_table=11 CP098604.1 Genbank gene 3605210 3605734 . + . ID=gene-NDY25_15560;Name=NDY25_15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15560 CP098604.1 Protein Homology CDS 3605210 3605734 . + 0 ID=cds-UUF01368.1;Parent=gene-NDY25_15560;Dbxref=NCBI_GP:UUF01368.1;Name=UUF01368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348509.1;locus_tag=NDY25_15560;product=hypothetical protein;protein_id=UUF01368.1;transl_table=11 CP098604.1 Genbank gene 3606023 3607279 . - . ID=gene-NDY25_15565;Name=NDY25_15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15565 CP098604.1 Protein Homology CDS 3606023 3607279 . - 0 ID=cds-UUF01369.1;Parent=gene-NDY25_15565;Dbxref=NCBI_GP:UUF01369.1;Name=UUF01369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504490.1;locus_tag=NDY25_15565;product=6-phosphofructokinase;protein_id=UUF01369.1;transl_table=11 CP098604.1 Genbank gene 3607437 3608000 . + . ID=gene-NDY25_15570;Name=NDY25_15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15570 CP098604.1 Protein Homology CDS 3607437 3608000 . + 0 ID=cds-UUF01370.1;Parent=gene-NDY25_15570;Dbxref=NCBI_GP:UUF01370.1;Name=UUF01370.1;Ontology_term=GO:0006139,GO:0005524,GO:0019205;gbkey=CDS;go_function=ATP binding|0005524||IEA,nucleobase-containing compound kinase activity|0019205||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364422.1;locus_tag=NDY25_15570;product=adenylate kinase;protein_id=UUF01370.1;transl_table=11 CP098604.1 Genbank gene 3608362 3609729 . + . ID=gene-NDY25_15575;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=NDY25_15575 CP098604.1 Protein Homology CDS 3608362 3609729 . + 0 ID=cds-UUF01371.1;Parent=gene-NDY25_15575;Dbxref=NCBI_GP:UUF01371.1;Name=UUF01371.1;Ontology_term=GO:0009252,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164849.1;locus_tag=NDY25_15575;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=UUF01371.1;transl_table=11 CP098604.1 Genbank gene 3609729 3610325 . + . ID=gene-NDY25_15580;Name=NDY25_15580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15580 CP098604.1 Protein Homology CDS 3609729 3610325 . + 0 ID=cds-UUF01372.1;Parent=gene-NDY25_15580;Dbxref=NCBI_GP:UUF01372.1;Name=UUF01372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451257.1;locus_tag=NDY25_15580;product=LON peptidase substrate-binding domain-containing protein;protein_id=UUF01372.1;transl_table=11 CP098604.1 Genbank gene 3610472 3611356 . + . ID=gene-NDY25_15585;Name=NDY25_15585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15585 CP098604.1 Protein Homology CDS 3610472 3611356 . + 0 ID=cds-UUF01373.1;Parent=gene-NDY25_15585;Dbxref=NCBI_GP:UUF01373.1;Name=UUF01373.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364428.1;locus_tag=NDY25_15585;product=hypothetical protein;protein_id=UUF01373.1;transl_table=11 CP098604.1 Genbank gene 3612178 3614265 . - . ID=gene-NDY25_15590;Name=NDY25_15590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15590 CP098604.1 Protein Homology CDS 3612178 3614265 . - 0 ID=cds-UUF01374.1;Parent=gene-NDY25_15590;Dbxref=NCBI_GP:UUF01374.1;Name=UUF01374.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165840.1;locus_tag=NDY25_15590;product=VTT domain-containing protein;protein_id=UUF01374.1;transl_table=11 CP098604.1 Genbank gene 3614428 3615087 . + . ID=gene-NDY25_15595;Name=NDY25_15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15595 CP098604.1 Protein Homology CDS 3614428 3615087 . + 0 ID=cds-UUF01375.1;Parent=gene-NDY25_15595;Dbxref=NCBI_GP:UUF01375.1;Name=UUF01375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303234.1;locus_tag=NDY25_15595;product=serine/threonine-protein kinase;protein_id=UUF01375.1;transl_table=11 CP098604.1 Genbank gene 3615197 3616159 . - . ID=gene-NDY25_15600;Name=NDY25_15600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15600 CP098604.1 Protein Homology CDS 3615197 3616159 . - 0 ID=cds-UUF01376.1;Parent=gene-NDY25_15600;Dbxref=NCBI_GP:UUF01376.1;Name=UUF01376.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_15600;product=IS1595 family transposase;protein_id=UUF01376.1;transl_table=11 CP098604.1 Genbank gene 3616296 3617111 . + . ID=gene-NDY25_15605;Name=NDY25_15605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15605 CP098604.1 Protein Homology CDS 3616296 3617111 . + 0 ID=cds-UUF01377.1;Parent=gene-NDY25_15605;Dbxref=NCBI_GP:UUF01377.1;Name=UUF01377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903011.1;locus_tag=NDY25_15605;product=NAD(P)-dependent oxidoreductase;protein_id=UUF01377.1;transl_table=11 CP098604.1 Genbank gene 3617329 3618309 . + . ID=gene-NDY25_15610;Name=NDY25_15610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15610 CP098604.1 Protein Homology CDS 3617329 3618309 . + 0 ID=cds-UUF01378.1;Parent=gene-NDY25_15610;Dbxref=NCBI_GP:UUF01378.1;Name=UUF01378.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009603396.1;locus_tag=NDY25_15610;product=YiiG family protein;protein_id=UUF01378.1;transl_table=11 CP098604.1 Genbank gene 3618419 3619360 . + . ID=gene-NDY25_15615;Name=NDY25_15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15615 CP098604.1 Protein Homology CDS 3618419 3619360 . + 0 ID=cds-UUF01379.1;Parent=gene-NDY25_15615;Dbxref=NCBI_GP:UUF01379.1;Name=UUF01379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448833.1;locus_tag=NDY25_15615;product=YiiG family protein;protein_id=UUF01379.1;transl_table=11 CP098604.1 Genbank gene 3619916 3620788 . - . ID=gene-NDY25_15620;Name=NDY25_15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15620 CP098604.1 Protein Homology CDS 3619916 3620788 . - 0 ID=cds-UUF01380.1;Parent=gene-NDY25_15620;Dbxref=NCBI_GP:UUF01380.1;Name=UUF01380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911973.1;locus_tag=NDY25_15620;product=ion transporter;protein_id=UUF01380.1;transl_table=11 CP098604.1 Genbank gene 3620861 3622087 . + . ID=gene-NDY25_15625;Name=NDY25_15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15625 CP098604.1 Protein Homology CDS 3620861 3622087 . + 0 ID=cds-UUF01381.1;Parent=gene-NDY25_15625;Dbxref=NCBI_GP:UUF01381.1;Name=UUF01381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451204.1;locus_tag=NDY25_15625;product=acetylornithine transaminase;protein_id=UUF01381.1;transl_table=11 CP098604.1 Genbank gene 3622196 3622816 . - . ID=gene-NDY25_15630;Name=NDY25_15630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15630 CP098604.1 Protein Homology CDS 3622196 3622816 . - 0 ID=cds-UUF01382.1;Parent=gene-NDY25_15630;Dbxref=NCBI_GP:UUF01382.1;Name=UUF01382.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577886.1;locus_tag=NDY25_15630;product=HAD-IA family hydrolase;protein_id=UUF01382.1;transl_table=11 CP098604.1 Genbank gene 3623101 3625395 . + . ID=gene-NDY25_15635;Name=NDY25_15635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15635 CP098604.1 Protein Homology CDS 3623101 3625395 . + 0 ID=cds-UUF01383.1;Parent=gene-NDY25_15635;Dbxref=NCBI_GP:UUF01383.1;Name=UUF01383.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038381.1;locus_tag=NDY25_15635;product=TonB-dependent receptor;protein_id=UUF01383.1;transl_table=11 CP098604.1 Genbank gene 3625483 3627090 . + . ID=gene-NDY25_15640;Name=NDY25_15640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15640 CP098604.1 Protein Homology CDS 3625483 3627090 . + 0 ID=cds-UUF01384.1;Parent=gene-NDY25_15640;Dbxref=NCBI_GP:UUF01384.1;Name=UUF01384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851068.1;locus_tag=NDY25_15640;product=flavin monoamine oxidase family protein;protein_id=UUF01384.1;transl_table=11 CP098604.1 Genbank gene 3627087 3627512 . + . ID=gene-NDY25_15645;Name=NDY25_15645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15645 CP098604.1 Protein Homology CDS 3627087 3627512 . + 0 ID=cds-UUF01385.1;Parent=gene-NDY25_15645;Dbxref=NCBI_GP:UUF01385.1;Name=UUF01385.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504474.1;locus_tag=NDY25_15645;product=cytochrome c;protein_id=UUF01385.1;transl_table=11 CP098604.1 Genbank gene 3627541 3628044 . + . ID=gene-NDY25_15650;Name=NDY25_15650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15650 CP098604.1 Protein Homology CDS 3627541 3628044 . + 0 ID=cds-UUF01386.1;Parent=gene-NDY25_15650;Dbxref=NCBI_GP:UUF01386.1;Name=UUF01386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348483.1;locus_tag=NDY25_15650;product=RidA family protein;protein_id=UUF01386.1;transl_table=11 CP098604.1 Genbank gene 3628075 3629277 . + . ID=gene-NDY25_15655;Name=NDY25_15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15655 CP098604.1 Protein Homology CDS 3628075 3629277 . + 0 ID=cds-UUF01387.1;Parent=gene-NDY25_15655;Dbxref=NCBI_GP:UUF01387.1;Name=UUF01387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926874.1;locus_tag=NDY25_15655;product=pyridoxal phosphate-dependent aminotransferase;protein_id=UUF01387.1;transl_table=11 CP098604.1 Genbank gene 3629369 3629818 . + . ID=gene-NDY25_15660;Name=azu;gbkey=Gene;gene=azu;gene_biotype=protein_coding;locus_tag=NDY25_15660 CP098604.1 Protein Homology CDS 3629369 3629818 . + 0 ID=cds-UUF01388.1;Parent=gene-NDY25_15660;Dbxref=NCBI_GP:UUF01388.1;Name=UUF01388.1;Ontology_term=GO:0005507,GO:0009055;gbkey=CDS;gene=azu;go_function=copper ion binding|0005507||IEA,electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851071.1;locus_tag=NDY25_15660;product=azurin;protein_id=UUF01388.1;transl_table=11 CP098604.1 Genbank gene 3629903 3632674 . - . ID=gene-NDY25_15665;Name=NDY25_15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15665 CP098604.1 Protein Homology CDS 3629903 3632674 . - 0 ID=cds-UUF01389.1;Parent=gene-NDY25_15665;Dbxref=NCBI_GP:UUF01389.1;Name=UUF01389.1;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451212.1;locus_tag=NDY25_15665;product=LuxR C-terminal-related transcriptional regulator;protein_id=UUF01389.1;transl_table=11 CP098604.1 Genbank gene 3632924 3634213 . - . ID=gene-NDY25_15670;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=NDY25_15670 CP098604.1 Protein Homology CDS 3632924 3634213 . - 0 ID=cds-UUF01390.1;Parent=gene-NDY25_15670;Dbxref=NCBI_GP:UUF01390.1;Name=UUF01390.1;Ontology_term=GO:0006779,GO:0042286,GO:0005737;gbkey=CDS;gene=hemL;go_component=cytoplasm|0005737||IEA;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052264.1;locus_tag=NDY25_15670;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=UUF01390.1;transl_table=11 CP098604.1 Genbank gene 3634521 3637697 . + . ID=gene-NDY25_15675;Name=NDY25_15675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15675 CP098604.1 Protein Homology CDS 3634521 3637697 . + 0 ID=cds-UUF01391.1;Parent=gene-NDY25_15675;Dbxref=NCBI_GP:UUF01391.1;Name=UUF01391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169557.1;locus_tag=NDY25_15675;product=TonB-dependent receptor;protein_id=UUF01391.1;transl_table=11 CP098604.1 Genbank gene 3638683 3639306 . - . ID=gene-NDY25_15680;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=NDY25_15680 CP098604.1 Protein Homology CDS 3638683 3639306 . - 0 ID=cds-UUF01392.1;Parent=gene-NDY25_15680;Dbxref=NCBI_GP:UUF01392.1;Name=UUF01392.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451384.1;locus_tag=NDY25_15680;product=thiamine phosphate synthase;protein_id=UUF01392.1;transl_table=11 CP098604.1 Genbank gene 3639330 3639569 . + . ID=gene-NDY25_15685;Name=NDY25_15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15685 CP098604.1 Protein Homology CDS 3639330 3639569 . + 0 ID=cds-UUF01393.1;Parent=gene-NDY25_15685;Dbxref=NCBI_GP:UUF01393.1;Name=UUF01393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156850.1;locus_tag=NDY25_15685;product=rubredoxin;protein_id=UUF01393.1;transl_table=11 CP098604.1 Genbank gene 3639667 3640548 . - . ID=gene-NDY25_15690;Name=NDY25_15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15690 CP098604.1 Protein Homology CDS 3639667 3640548 . - 0 ID=cds-UUF01394.1;Parent=gene-NDY25_15690;Dbxref=NCBI_GP:UUF01394.1;Name=UUF01394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851075.1;locus_tag=NDY25_15690;product=SirB1 family protein;protein_id=UUF01394.1;transl_table=11 CP098604.1 Genbank gene 3640589 3641038 . - . ID=gene-NDY25_15695;Name=NDY25_15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15695 CP098604.1 Protein Homology CDS 3640589 3641038 . - 0 ID=cds-UUF04678.1;Parent=gene-NDY25_15695;Dbxref=NCBI_GP:UUF04678.1;Name=UUF04678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967674.1;locus_tag=NDY25_15695;product=DUF192 domain-containing protein;protein_id=UUF04678.1;transl_table=11 CP098604.1 Genbank gene 3641203 3641850 . - . ID=gene-NDY25_15700;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=NDY25_15700 CP098604.1 Protein Homology CDS 3641203 3641850 . - 0 ID=cds-UUF01395.1;Parent=gene-NDY25_15700;Dbxref=NCBI_GP:UUF01395.1;Name=UUF01395.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994531.1;locus_tag=NDY25_15700;product=ribose-5-phosphate isomerase RpiA;protein_id=UUF01395.1;transl_table=11 CP098604.1 Genbank gene 3641957 3642427 . - . ID=gene-NDY25_15705;Name=NDY25_15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15705 CP098604.1 Protein Homology CDS 3641957 3642427 . - 0 ID=cds-UUF01396.1;Parent=gene-NDY25_15705;Dbxref=NCBI_GP:UUF01396.1;Name=UUF01396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812469.1;locus_tag=NDY25_15705;product=EVE domain-containing protein;protein_id=UUF01396.1;transl_table=11 CP098604.1 Genbank gene 3642424 3643014 . - . ID=gene-NDY25_15710;Name=NDY25_15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15710 CP098604.1 Protein Homology CDS 3642424 3643014 . - 0 ID=cds-UUF01397.1;Parent=gene-NDY25_15710;Dbxref=NCBI_GP:UUF01397.1;Name=UUF01397.1;Ontology_term=GO:0006730,GO:0030272;gbkey=CDS;go_function=5-formyltetrahydrofolate cyclo-ligase activity|0030272||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451378.1;locus_tag=NDY25_15710;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=UUF01397.1;transl_table=11 CP098604.1 Genbank gene 3643096 3643280 . - . ID=gene-NDY25_15715;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=NDY25_15715 CP098604.1 cmsearch ncRNA 3643096 3643280 . - . ID=rna-NDY25_15715;Parent=gene-NDY25_15715;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15715;product=6S RNA CP098604.1 cmsearch exon 3643096 3643280 . - . ID=exon-NDY25_15715-1;Parent=rna-NDY25_15715;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_15715;product=6S RNA CP098604.1 Genbank gene 3643376 3643675 . - . ID=gene-NDY25_15720;Name=NDY25_15720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15720 CP098604.1 Protein Homology CDS 3643376 3643675 . - 0 ID=cds-UUF01398.1;Parent=gene-NDY25_15720;Dbxref=NCBI_GP:UUF01398.1;Name=UUF01398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300828.1;locus_tag=NDY25_15720;product=cell division protein ZapA;protein_id=UUF01398.1;transl_table=11 CP098604.1 Genbank gene 3643672 3643893 . - . ID=gene-NDY25_15725;Name=NDY25_15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15725 CP098604.1 Protein Homology CDS 3643672 3643893 . - 0 ID=cds-UUF04679.1;Parent=gene-NDY25_15725;Dbxref=NCBI_GP:UUF04679.1;Name=UUF04679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812462.1;locus_tag=NDY25_15725;product=TIGR02449 family protein;protein_id=UUF04679.1;transl_table=11 CP098604.1 Genbank gene 3644131 3644673 . + . ID=gene-NDY25_15730;Name=NDY25_15730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15730 CP098604.1 Protein Homology CDS 3644131 3644673 . + 0 ID=cds-UUF01399.1;Parent=gene-NDY25_15730;Dbxref=NCBI_GP:UUF01399.1;Name=UUF01399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156855.1;locus_tag=NDY25_15730;product=YecA family protein;protein_id=UUF01399.1;transl_table=11 CP098604.1 Genbank gene 3644687 3646018 . + . ID=gene-NDY25_15735;Name=NDY25_15735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15735 CP098604.1 Protein Homology CDS 3644687 3646018 . + 0 ID=cds-UUF01400.1;Parent=gene-NDY25_15735;Dbxref=NCBI_GP:UUF01400.1;Name=UUF01400.1;Ontology_term=GO:0030145,GO:0070006;gbkey=CDS;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967663.1;locus_tag=NDY25_15735;product=aminopeptidase P N-terminal domain-containing protein;protein_id=UUF01400.1;transl_table=11 CP098604.1 Genbank gene 3646522 3646920 . - . ID=gene-NDY25_15740;Name=NDY25_15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15740 CP098604.1 Protein Homology CDS 3646522 3646920 . - 0 ID=cds-UUF01401.1;Parent=gene-NDY25_15740;Dbxref=NCBI_GP:UUF01401.1;Name=UUF01401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508836.1;locus_tag=NDY25_15740;product=hypothetical protein;protein_id=UUF01401.1;transl_table=11 CP098604.1 Genbank gene 3646949 3648274 . - . ID=gene-NDY25_15745;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=NDY25_15745 CP098604.1 Protein Homology CDS 3646949 3648274 . - 0 ID=cds-UUF01402.1;Parent=gene-NDY25_15745;Dbxref=NCBI_GP:UUF01402.1;Name=UUF01402.1;gbkey=CDS;gene=pepQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926900.1;locus_tag=NDY25_15745;product=Xaa-Pro dipeptidase;protein_id=UUF01402.1;transl_table=11 CP098604.1 Genbank gene 3648344 3648691 . - . ID=gene-NDY25_15750;Name=NDY25_15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15750 CP098604.1 Protein Homology CDS 3648344 3648691 . - 0 ID=cds-UUF01403.1;Parent=gene-NDY25_15750;Dbxref=NCBI_GP:UUF01403.1;Name=UUF01403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156859.1;locus_tag=NDY25_15750;product=PilZ domain-containing protein;protein_id=UUF01403.1;transl_table=11 CP098604.1 Genbank gene 3648688 3651120 . - . ID=gene-NDY25_15755;Name=NDY25_15755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15755 CP098604.1 Protein Homology CDS 3648688 3651120 . - 0 ID=cds-UUF01404.1;Parent=gene-NDY25_15755;Dbxref=NCBI_GP:UUF01404.1;Name=UUF01404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451371.1;locus_tag=NDY25_15755;product=DUF1631 domain-containing protein;protein_id=UUF01404.1;transl_table=11 CP098604.1 Genbank gene 3651300 3652457 . - . ID=gene-NDY25_15760;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=NDY25_15760 CP098604.1 Protein Homology CDS 3651300 3652457 . - 0 ID=cds-UUF01405.1;Parent=gene-NDY25_15760;Dbxref=NCBI_GP:UUF01405.1;Name=UUF01405.1;Ontology_term=GO:0006779,GO:0051989;gbkey=CDS;gene=hemW;go_function=coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451370.1;locus_tag=NDY25_15760;product=radical SAM family heme chaperone HemW;protein_id=UUF01405.1;transl_table=11 CP098604.1 Genbank gene 3652474 3653073 . - . ID=gene-NDY25_15765;Name=rdgB;gbkey=Gene;gene=rdgB;gene_biotype=protein_coding;locus_tag=NDY25_15765 CP098604.1 Protein Homology CDS 3652474 3653073 . - 0 ID=cds-UUF01406.1;Parent=gene-NDY25_15765;Dbxref=NCBI_GP:UUF01406.1;Name=UUF01406.1;Ontology_term=GO:0006281,GO:0016462;gbkey=CDS;gene=rdgB;go_function=pyrophosphatase activity|0016462||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162718.1;locus_tag=NDY25_15765;product=RdgB/HAM1 family non-canonical purine NTP pyrophosphatase;protein_id=UUF01406.1;transl_table=11 CP098604.1 Genbank gene 3653070 3653462 . - . ID=gene-NDY25_15770;Name=NDY25_15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15770 CP098604.1 Protein Homology CDS 3653070 3653462 . - 0 ID=cds-UUF01407.1;Parent=gene-NDY25_15770;Dbxref=NCBI_GP:UUF01407.1;Name=UUF01407.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156863.1;locus_tag=NDY25_15770;product=VOC family protein;protein_id=UUF01407.1;transl_table=11 CP098604.1 Genbank gene 3653459 3654184 . - . ID=gene-NDY25_15775;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=NDY25_15775 CP098604.1 Protein Homology CDS 3653459 3654184 . - 0 ID=cds-UUF01408.1;Parent=gene-NDY25_15775;Dbxref=NCBI_GP:UUF01408.1;Name=UUF01408.1;Ontology_term=GO:0008033,GO:0004549;gbkey=CDS;gene=rph;go_function=tRNA-specific ribonuclease activity|0004549||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005926909.1;locus_tag=NDY25_15775;product=ribonuclease PH;protein_id=UUF01408.1;transl_table=11 CP098604.1 Genbank gene 3654294 3655154 . + . ID=gene-NDY25_15780;Name=NDY25_15780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15780 CP098604.1 Protein Homology CDS 3654294 3655154 . + 0 ID=cds-UUF01409.1;Parent=gene-NDY25_15780;Dbxref=NCBI_GP:UUF01409.1;Name=UUF01409.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996763.1;locus_tag=NDY25_15780;product=YicC family protein;protein_id=UUF01409.1;transl_table=11 CP098604.1 Genbank gene 3655267 3655878 . + . ID=gene-NDY25_15785;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=NDY25_15785 CP098604.1 Protein Homology CDS 3655267 3655878 . + 0 ID=cds-UUF01410.1;Parent=gene-NDY25_15785;Dbxref=NCBI_GP:UUF01410.1;Name=UUF01410.1;Ontology_term=GO:0015949,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377105.1;locus_tag=NDY25_15785;product=guanylate kinase;protein_id=UUF01410.1;transl_table=11 CP098604.1 Genbank gene 3656169 3656468 . + . ID=gene-NDY25_15790;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=NDY25_15790 CP098604.1 Protein Homology CDS 3656169 3656468 . + 0 ID=cds-UUF01411.1;Parent=gene-NDY25_15790;Dbxref=NCBI_GP:UUF01411.1;Name=UUF01411.1;Ontology_term=GO:0006351,GO:0003899,GO:0000345;gbkey=CDS;gene=rpoZ;go_component=cytosolic DNA-directed RNA polymerase complex|0000345||IEA;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=transcription%2C DNA-templated|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812428.1;locus_tag=NDY25_15790;product=DNA-directed RNA polymerase subunit omega;protein_id=UUF01411.1;transl_table=11 CP098604.1 Genbank gene 3656596 3658767 . + . ID=gene-NDY25_15795;Name=NDY25_15795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15795 CP098604.1 Protein Homology CDS 3656596 3658767 . + 0 ID=cds-UUF01412.1;Parent=gene-NDY25_15795;Dbxref=NCBI_GP:UUF01412.1;Name=UUF01412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269543.1;locus_tag=NDY25_15795;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=UUF01412.1;transl_table=11 CP098604.1 Genbank gene 3658840 3659220 . + . ID=gene-NDY25_15800;Name=NDY25_15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15800 CP098604.1 Protein Homology CDS 3658840 3659220 . + 0 ID=cds-UUF01413.1;Parent=gene-NDY25_15800;Dbxref=NCBI_GP:UUF01413.1;Name=UUF01413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486159.1;locus_tag=NDY25_15800;product=RidA family protein;protein_id=UUF01413.1;transl_table=11 CP098604.1 Genbank gene 3659251 3661395 . + . ID=gene-NDY25_15805;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=NDY25_15805 CP098604.1 Protein Homology CDS 3659251 3661395 . + 0 ID=cds-UUF01414.1;Parent=gene-NDY25_15805;Dbxref=NCBI_GP:UUF01414.1;Name=UUF01414.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300815.1;locus_tag=NDY25_15805;product=ATP-dependent DNA helicase RecG;protein_id=UUF01414.1;transl_table=11 CP098604.1 Genbank gene 3661534 3662472 . + . ID=gene-NDY25_15810;Name=NDY25_15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15810 CP098604.1 Protein Homology CDS 3661534 3662472 . + 0 ID=cds-UUF01415.1;Parent=gene-NDY25_15810;Dbxref=NCBI_GP:UUF01415.1;Name=UUF01415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904706.1;locus_tag=NDY25_15810;product=nucleoside hydrolase;protein_id=UUF01415.1;transl_table=11 CP098604.1 Genbank gene 3662545 3662787 . + . ID=gene-NDY25_15815;Name=NDY25_15815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15815 CP098604.1 Protein Homology CDS 3662545 3662787 . + 0 ID=cds-UUF01416.1;Parent=gene-NDY25_15815;Dbxref=NCBI_GP:UUF01416.1;Name=UUF01416.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156869.1;locus_tag=NDY25_15815;product=type B 50S ribosomal protein L31;protein_id=UUF01416.1;transl_table=11 CP098604.1 Genbank gene 3663019 3664308 . + . ID=gene-NDY25_15820;Name=NDY25_15820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15820 CP098604.1 Protein Homology CDS 3663019 3664308 . + 0 ID=cds-UUF01417.1;Parent=gene-NDY25_15820;Dbxref=NCBI_GP:UUF01417.1;Name=UUF01417.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156870.1;locus_tag=NDY25_15820;product=citrate synthase;protein_id=UUF01417.1;transl_table=11 CP098604.1 Genbank gene 3664412 3665062 . - . ID=gene-NDY25_15825;Name=NDY25_15825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15825 CP098604.1 Protein Homology CDS 3664412 3665062 . - 0 ID=cds-UUF01418.1;Parent=gene-NDY25_15825;Dbxref=NCBI_GP:UUF01418.1;Name=UUF01418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437499.1;locus_tag=NDY25_15825;product=hypothetical protein;protein_id=UUF01418.1;transl_table=11 CP098604.1 Genbank gene 3665275 3667701 . - . ID=gene-NDY25_15830;Name=NDY25_15830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15830 CP098604.1 Protein Homology CDS 3665275 3667701 . - 0 ID=cds-UUF01419.1;Parent=gene-NDY25_15830;Dbxref=NCBI_GP:UUF01419.1;Name=UUF01419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812411.1;locus_tag=NDY25_15830;product=penicillin-binding protein 1A;protein_id=UUF01419.1;transl_table=11 CP098604.1 Genbank gene 3667893 3668975 . + . ID=gene-NDY25_15835;Name=NDY25_15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15835 CP098604.1 Protein Homology CDS 3667893 3668975 . + 0 ID=cds-UUF01420.1;Parent=gene-NDY25_15835;Dbxref=NCBI_GP:UUF01420.1;Name=UUF01420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974443.1;locus_tag=NDY25_15835;product=pilus assembly protein PilM;protein_id=UUF01420.1;transl_table=11 CP098604.1 Genbank gene 3668975 3669871 . + . ID=gene-NDY25_15840;Name=NDY25_15840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15840 CP098604.1 Protein Homology CDS 3668975 3669871 . + 0 ID=cds-UUF01421.1;Parent=gene-NDY25_15840;Dbxref=NCBI_GP:UUF01421.1;Name=UUF01421.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005911890.1;locus_tag=NDY25_15840;product=PilN domain-containing protein;protein_id=UUF01421.1;transl_table=11 CP098604.1 Genbank gene 3669772 3670407 . + . ID=gene-NDY25_15845;Name=NDY25_15845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15845 CP098604.1 Protein Homology CDS 3669772 3670407 . + 0 ID=cds-UUF04680.1;Parent=gene-NDY25_15845;Dbxref=NCBI_GP:UUF04680.1;Name=UUF04680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183882.1;locus_tag=NDY25_15845;product=type 4a pilus biogenesis protein PilO;protein_id=UUF04680.1;transl_table=11 CP098604.1 Genbank gene 3670404 3670937 . + . ID=gene-NDY25_15850;Name=NDY25_15850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15850 CP098604.1 Protein Homology CDS 3670404 3670937 . + 0 ID=cds-UUF01422.1;Parent=gene-NDY25_15850;Dbxref=NCBI_GP:UUF01422.1;Name=UUF01422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364547.1;locus_tag=NDY25_15850;product=pilus assembly protein PilP;protein_id=UUF01422.1;transl_table=11 CP098604.1 Genbank gene 3670957 3672909 . + . ID=gene-NDY25_15855;Name=NDY25_15855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15855 CP098604.1 Protein Homology CDS 3670957 3672909 . + 0 ID=cds-UUF04681.1;Parent=gene-NDY25_15855;Dbxref=NCBI_GP:UUF04681.1;Name=UUF04681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038331.1;locus_tag=NDY25_15855;product=type IV pilus secretin PilQ family protein;protein_id=UUF04681.1;transl_table=11 CP098604.1 Genbank gene 3673179 3674198 . + . ID=gene-NDY25_15860;Name=NDY25_15860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15860 CP098604.1 Protein Homology CDS 3673179 3674198 . + 0 ID=cds-UUF01423.1;Parent=gene-NDY25_15860;Dbxref=NCBI_GP:UUF01423.1;Name=UUF01423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166368.1;locus_tag=NDY25_15860;product=MoxR family ATPase;protein_id=UUF01423.1;transl_table=11 CP098604.1 Genbank gene 3674221 3675183 . + . ID=gene-NDY25_15865;Name=NDY25_15865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15865 CP098604.1 Protein Homology CDS 3674221 3675183 . + 0 ID=cds-UUF01424.1;Parent=gene-NDY25_15865;Dbxref=NCBI_GP:UUF01424.1;Name=UUF01424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304741.1;locus_tag=NDY25_15865;product=DUF58 domain-containing protein;protein_id=UUF01424.1;transl_table=11 CP098604.1 Genbank gene 3675186 3675647 . + . ID=gene-NDY25_15870;Name=NDY25_15870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15870 CP098604.1 Protein Homology CDS 3675186 3675647 . + 0 ID=cds-UUF01425.1;Parent=gene-NDY25_15870;Dbxref=NCBI_GP:UUF01425.1;Name=UUF01425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486191.1;locus_tag=NDY25_15870;product=DUF4381 domain-containing protein;protein_id=UUF01425.1;transl_table=11 CP098604.1 Genbank gene 3675644 3676651 . + . ID=gene-NDY25_15875;Name=NDY25_15875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15875 CP098604.1 Protein Homology CDS 3675644 3676651 . + 0 ID=cds-UUF01426.1;Parent=gene-NDY25_15875;Dbxref=NCBI_GP:UUF01426.1;Name=UUF01426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995820.1;locus_tag=NDY25_15875;product=VWA domain-containing protein;protein_id=UUF01426.1;transl_table=11 CP098604.1 Genbank gene 3676648 3678501 . + . ID=gene-NDY25_15880;Name=NDY25_15880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15880 CP098604.1 Protein Homology CDS 3676648 3678501 . + 0 ID=cds-UUF01427.1;Parent=gene-NDY25_15880;Dbxref=NCBI_GP:UUF01427.1;Name=UUF01427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575858.1;locus_tag=NDY25_15880;product=VWA domain-containing protein;protein_id=UUF01427.1;transl_table=11 CP098604.1 Genbank gene 3678498 3680264 . + . ID=gene-NDY25_15885;Name=NDY25_15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15885 CP098604.1 Protein Homology CDS 3678498 3680264 . + 0 ID=cds-UUF01428.1;Parent=gene-NDY25_15885;Dbxref=NCBI_GP:UUF01428.1;Name=UUF01428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451346.1;locus_tag=NDY25_15885;product=BatD family protein;protein_id=UUF01428.1;transl_table=11 CP098604.1 Genbank gene 3681038 3682318 . + . ID=gene-NDY25_15890;Name=NDY25_15890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15890 CP098604.1 Protein Homology CDS 3681038 3682318 . + 0 ID=cds-UUF01429.1;Parent=gene-NDY25_15890;Dbxref=NCBI_GP:UUF01429.1;Name=UUF01429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472649.1;locus_tag=NDY25_15890;product=dicarboxylate/amino acid:cation symporter;protein_id=UUF01429.1;transl_table=11 CP098604.1 Genbank gene 3682576 3684576 . + . ID=gene-NDY25_15895;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=NDY25_15895 CP098604.1 Protein Homology CDS 3682576 3684576 . + 0 ID=cds-UUF01430.1;Parent=gene-NDY25_15895;Dbxref=NCBI_GP:UUF01430.1;Name=UUF01430.1;Ontology_term=GO:0006098,GO:0004802,GO:0005737;gbkey=CDS;gene=tkt;go_component=cytoplasm|0005737||IEA;go_function=transketolase activity|0004802||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348449.1;locus_tag=NDY25_15895;product=transketolase;protein_id=UUF01430.1;transl_table=11 CP098604.1 Genbank gene 3684684 3684875 . - . ID=gene-NDY25_15900;Name=NDY25_15900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15900 CP098604.1 GeneMarkS-2+ CDS 3684684 3684875 . - 0 ID=cds-UUF01431.1;Parent=gene-NDY25_15900;Dbxref=NCBI_GP:UUF01431.1;Name=UUF01431.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_15900;product=hypothetical protein;protein_id=UUF01431.1;transl_table=11 CP098604.1 Genbank gene 3685059 3687251 . + . ID=gene-NDY25_15905;Name=fhuE;gbkey=Gene;gene=fhuE;gene_biotype=protein_coding;locus_tag=NDY25_15905 CP098604.1 Protein Homology CDS 3685059 3687251 . + 0 ID=cds-UUF01432.1;Parent=gene-NDY25_15905;Dbxref=NCBI_GP:UUF01432.1;Name=UUF01432.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuE;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156888.1;locus_tag=NDY25_15905;product=ferric-rhodotorulic acid/ferric-coprogen receptor FhuE;protein_id=UUF01432.1;transl_table=11 CP098604.1 Genbank gene 3687543 3688514 . - . ID=gene-NDY25_15910;Name=NDY25_15910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15910 CP098604.1 Protein Homology CDS 3687543 3688514 . - 0 ID=cds-UUF04682.1;Parent=gene-NDY25_15910;Dbxref=NCBI_GP:UUF04682.1;Name=UUF04682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377065.1;locus_tag=NDY25_15910;product=LysR family transcriptional regulator;protein_id=UUF04682.1;transl_table=11 CP098604.1 Genbank gene 3688674 3689435 . + . ID=gene-NDY25_15915;Name=NDY25_15915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15915 CP098604.1 Protein Homology CDS 3688674 3689435 . + 0 ID=cds-UUF01433.1;Parent=gene-NDY25_15915;Dbxref=NCBI_GP:UUF01433.1;Name=UUF01433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237321.1;locus_tag=NDY25_15915;product=SDR family oxidoreductase;protein_id=UUF01433.1;transl_table=11 CP098604.1 Genbank gene 3689492 3690208 . - . ID=gene-NDY25_15920;Name=NDY25_15920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15920 CP098604.1 Protein Homology CDS 3689492 3690208 . - 0 ID=cds-UUF01434.1;Parent=gene-NDY25_15920;Dbxref=NCBI_GP:UUF01434.1;Name=UUF01434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156889.1;locus_tag=NDY25_15920;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=UUF01434.1;transl_table=11 CP098604.1 Genbank gene 3690211 3691134 . - . ID=gene-NDY25_15925;Name=NDY25_15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15925 CP098604.1 Protein Homology CDS 3690211 3691134 . - 0 ID=cds-UUF04683.1;Parent=gene-NDY25_15925;Dbxref=NCBI_GP:UUF04683.1;Name=UUF04683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156890.1;locus_tag=NDY25_15925;product=L%2CD-transpeptidase;protein_id=UUF04683.1;transl_table=11 CP098604.1 Genbank gene 3691505 3694219 . - . ID=gene-NDY25_15930;Name=NDY25_15930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15930 CP098604.1 Protein Homology CDS 3691505 3694219 . - 0 ID=cds-UUF01435.1;Parent=gene-NDY25_15930;Dbxref=NCBI_GP:UUF01435.1;Name=UUF01435.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377055.1;locus_tag=NDY25_15930;product=TonB-dependent receptor;protein_id=UUF01435.1;transl_table=11 CP098604.1 Genbank gene 3694357 3695532 . - . ID=gene-NDY25_15935;Name=NDY25_15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15935 CP098604.1 Protein Homology CDS 3694357 3695532 . - 0 ID=cds-UUF01436.1;Parent=gene-NDY25_15935;Dbxref=NCBI_GP:UUF01436.1;Name=UUF01436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437513.1;locus_tag=NDY25_15935;product=phosphatidylinositol-specific phospholipase C1-like protein;protein_id=UUF01436.1;transl_table=11 CP098604.1 Genbank gene 3695700 3697631 . - . ID=gene-NDY25_15940;Name=NDY25_15940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15940 CP098604.1 Protein Homology CDS 3695700 3697631 . - 0 ID=cds-UUF01437.1;Parent=gene-NDY25_15940;Dbxref=NCBI_GP:UUF01437.1;Name=UUF01437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364587.1;locus_tag=NDY25_15940;product=acetyl-CoA hydrolase;protein_id=UUF01437.1;transl_table=11 CP098604.1 Genbank gene 3697786 3698151 . + . ID=gene-NDY25_15945;Name=NDY25_15945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15945 CP098604.1 Protein Homology CDS 3697786 3698151 . + 0 ID=cds-UUF01438.1;Parent=gene-NDY25_15945;Dbxref=NCBI_GP:UUF01438.1;Name=UUF01438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156901.1;locus_tag=NDY25_15945;product=BlaI/MecI/CopY family transcriptional regulator;protein_id=UUF01438.1;transl_table=11 CP098604.1 Genbank gene 3698141 3699484 . + . ID=gene-NDY25_15950;Name=NDY25_15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15950 CP098604.1 Protein Homology CDS 3698141 3699484 . + 0 ID=cds-UUF01439.1;Parent=gene-NDY25_15950;Dbxref=NCBI_GP:UUF01439.1;Name=UUF01439.1;Ontology_term=GO:0006810,GO:0015291;gbkey=CDS;go_function=secondary active transmembrane transporter activity|0015291||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917494.1;locus_tag=NDY25_15950;product=TonB family protein;protein_id=UUF01439.1;transl_table=11 CP098604.1 Genbank gene 3699481 3700065 . + . ID=gene-NDY25_15955;Name=NDY25_15955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15955 CP098604.1 Protein Homology CDS 3699481 3700065 . + 0 ID=cds-UUF01440.1;Parent=gene-NDY25_15955;Dbxref=NCBI_GP:UUF01440.1;Name=UUF01440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452862.1;locus_tag=NDY25_15955;product=hypothetical protein;protein_id=UUF01440.1;transl_table=11 CP098604.1 Genbank gene 3700119 3700733 . - . ID=gene-NDY25_15960;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=NDY25_15960 CP098604.1 Protein Homology CDS 3700119 3700733 . - 0 ID=cds-UUF01441.1;Parent=gene-NDY25_15960;Dbxref=NCBI_GP:UUF01441.1;Name=UUF01441.1;Ontology_term=GO:0015689,GO:0005524,GO:0015412,GO:0009898,GO:0055052;gbkey=CDS;gene=modC;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ABC-type molybdate transporter activity|0015412||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038308.1;locus_tag=NDY25_15960;product=molybdenum ABC transporter ATP-binding protein;protein_id=UUF01441.1;transl_table=11 CP098604.1 Genbank gene 3700733 3701419 . - . ID=gene-NDY25_15965;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=NDY25_15965 CP098604.1 Protein Homology CDS 3700733 3701419 . - 0 ID=cds-UUF04684.1;Parent=gene-NDY25_15965;Dbxref=NCBI_GP:UUF04684.1;Name=UUF04684.1;Ontology_term=GO:0015689,GO:0015098,GO:0016021;gbkey=CDS;gene=modB;go_component=integral component of membrane|0016021||IEA;go_function=molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116572.1;locus_tag=NDY25_15965;product=molybdate ABC transporter permease subunit;protein_id=UUF04684.1;transl_table=11 CP098604.1 Genbank gene 3701435 3702211 . - . ID=gene-NDY25_15970;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=NDY25_15970 CP098604.1 Protein Homology CDS 3701435 3702211 . - 0 ID=cds-UUF01442.1;Parent=gene-NDY25_15970;Dbxref=NCBI_GP:UUF01442.1;Name=UUF01442.1;Ontology_term=GO:0015689;gbkey=CDS;gene=modA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005933035.1;locus_tag=NDY25_15970;product=molybdate ABC transporter substrate-binding protein;protein_id=UUF01442.1;transl_table=11 CP098604.1 Genbank gene 3702288 3703112 . - . ID=gene-NDY25_15975;Name=NDY25_15975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15975 CP098604.1 Protein Homology CDS 3702288 3703112 . - 0 ID=cds-UUF01443.1;Parent=gene-NDY25_15975;Dbxref=NCBI_GP:UUF01443.1;Name=UUF01443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452858.1;locus_tag=NDY25_15975;product=MBL fold metallo-hydrolase;protein_id=UUF01443.1;transl_table=11 CP098604.1 Genbank gene 3703126 3703986 . - . ID=gene-NDY25_15980;Name=NDY25_15980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15980 CP098604.1 Protein Homology CDS 3703126 3703986 . - 0 ID=cds-UUF01444.1;Parent=gene-NDY25_15980;Dbxref=NCBI_GP:UUF01444.1;Name=UUF01444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090938.1;locus_tag=NDY25_15980;product=S1/P1 nuclease;protein_id=UUF01444.1;transl_table=11 CP098604.1 Genbank gene 3704027 3704641 . - . ID=gene-NDY25_15985;Name=NDY25_15985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15985 CP098604.1 Protein Homology CDS 3704027 3704641 . - 0 ID=cds-UUF01445.1;Parent=gene-NDY25_15985;Dbxref=NCBI_GP:UUF01445.1;Name=UUF01445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156909.1;locus_tag=NDY25_15985;product=outer membrane beta-barrel protein;protein_id=UUF01445.1;transl_table=11 CP098604.1 Genbank gene 3704758 3705381 . - . ID=gene-NDY25_15990;Name=NDY25_15990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15990 CP098604.1 Protein Homology CDS 3704758 3705381 . - 0 ID=cds-UUF01446.1;Parent=gene-NDY25_15990;Dbxref=NCBI_GP:UUF01446.1;Name=UUF01446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972397.1;locus_tag=NDY25_15990;product=outer membrane beta-barrel protein;protein_id=UUF01446.1;transl_table=11 CP098604.1 Genbank gene 3705669 3706181 . - . ID=gene-NDY25_15995;Name=NDY25_15995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_15995 CP098604.1 Protein Homology CDS 3705669 3706181 . - 0 ID=cds-UUF01447.1;Parent=gene-NDY25_15995;Dbxref=NCBI_GP:UUF01447.1;Name=UUF01447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156911.1;locus_tag=NDY25_15995;product=SgcJ/EcaC family oxidoreductase;protein_id=UUF01447.1;transl_table=11 CP098604.1 Genbank gene 3706763 3707764 . + . ID=gene-NDY25_16000;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;locus_tag=NDY25_16000 CP098604.1 Protein Homology CDS 3706763 3707764 . + 0 ID=cds-UUF01448.1;Parent=gene-NDY25_16000;Dbxref=NCBI_GP:UUF01448.1;Name=UUF01448.1;Ontology_term=GO:0006094,GO:0006096,GO:0019682;gbkey=CDS;gene=gap;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA,glyceraldehyde-3-phosphate metabolic process|0019682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300876.1;locus_tag=NDY25_16000;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=UUF01448.1;transl_table=11 CP098604.1 Genbank gene 3707982 3708452 . + . ID=gene-NDY25_16005;Name=NDY25_16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16005 CP098604.1 Protein Homology CDS 3707982 3708452 . + 0 ID=cds-UUF01449.1;Parent=gene-NDY25_16005;Dbxref=NCBI_GP:UUF01449.1;Name=UUF01449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965561.1;locus_tag=NDY25_16005;product=hypothetical protein;protein_id=UUF01449.1;transl_table=11 CP098604.1 Genbank pseudogene 3708645 3711411 . + . ID=gene-NDY25_16010;Name=NDY25_16010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16010;pseudo=true CP098604.1 Protein Homology CDS 3708645 3711411 . + 0 ID=cds-NDY25_16010;Parent=gene-NDY25_16010;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159178.1;locus_tag=NDY25_16010;product=DUF2339 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3711408 3712766 . + . ID=gene-NDY25_16015;Name=NDY25_16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16015 CP098604.1 Protein Homology CDS 3711408 3712766 . + 0 ID=cds-UUF01450.1;Parent=gene-NDY25_16015;Dbxref=NCBI_GP:UUF01450.1;Name=UUF01450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451412.1;locus_tag=NDY25_16015;product=DUF3999 domain-containing protein;protein_id=UUF01450.1;transl_table=11 CP098604.1 Genbank gene 3713087 3714262 . + . ID=gene-NDY25_16020;Name=NDY25_16020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16020 CP098604.1 Protein Homology CDS 3713087 3714262 . + 0 ID=cds-UUF01451.1;Parent=gene-NDY25_16020;Dbxref=NCBI_GP:UUF01451.1;Name=UUF01451.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445624.1;locus_tag=NDY25_16020;product=phosphoglycerate kinase;protein_id=UUF01451.1;transl_table=11 CP098604.1 Genbank gene 3714259 3714912 . + . ID=gene-NDY25_16025;Name=NDY25_16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16025 CP098604.1 Protein Homology CDS 3714259 3714912 . + 0 ID=cds-UUF01452.1;Parent=gene-NDY25_16025;Dbxref=NCBI_GP:UUF01452.1;Name=UUF01452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038294.1;locus_tag=NDY25_16025;product=HAD family hydrolase;protein_id=UUF01452.1;transl_table=11 CP098604.1 Genbank gene 3715121 3716587 . + . ID=gene-NDY25_16030;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=NDY25_16030 CP098604.1 Protein Homology CDS 3715121 3716587 . + 0 ID=cds-UUF01453.1;Parent=gene-NDY25_16030;Dbxref=NCBI_GP:UUF01453.1;Name=UUF01453.1;Ontology_term=GO:0006096,GO:0004743,GO:0005737;gbkey=CDS;gene=pyk;go_component=cytoplasm|0005737||IEA;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487265.1;locus_tag=NDY25_16030;product=pyruvate kinase;protein_id=UUF01453.1;transl_table=11 CP098604.1 Genbank gene 3716938 3717942 . + . ID=gene-NDY25_16035;Name=NDY25_16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16035 CP098604.1 Protein Homology CDS 3716938 3717942 . + 0 ID=cds-UUF01454.1;Parent=gene-NDY25_16035;Dbxref=NCBI_GP:UUF01454.1;Name=UUF01454.1;Ontology_term=GO:0006096,GO:0004332;gbkey=CDS;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437525.1;locus_tag=NDY25_16035;product=fructose-bisphosphate aldolase class I;protein_id=UUF01454.1;transl_table=11 CP098604.1 Genbank gene 3718189 3718728 . - . ID=gene-NDY25_16040;Name=NDY25_16040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16040 CP098604.1 Protein Homology CDS 3718189 3718728 . - 0 ID=cds-UUF01455.1;Parent=gene-NDY25_16040;Dbxref=NCBI_GP:UUF01455.1;Name=UUF01455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300868.1;locus_tag=NDY25_16040;product=O-acetyl-ADP-ribose deacetylase;protein_id=UUF01455.1;transl_table=11 CP098604.1 Genbank gene 3718937 3719443 . - . ID=gene-NDY25_16045;Name=NDY25_16045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16045 CP098604.1 Protein Homology CDS 3718937 3719443 . - 0 ID=cds-UUF01456.1;Parent=gene-NDY25_16045;Dbxref=NCBI_GP:UUF01456.1;Name=UUF01456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155478.1;locus_tag=NDY25_16045;product=isoprenylcysteine carboxylmethyltransferase family protein;protein_id=UUF01456.1;transl_table=11 CP098604.1 Genbank gene 3719697 3720656 . - . ID=gene-NDY25_16050;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=NDY25_16050 CP098604.1 Protein Homology CDS 3719697 3720656 . - 0 ID=cds-UUF01457.1;Parent=gene-NDY25_16050;Dbxref=NCBI_GP:UUF01457.1;Name=UUF01457.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660021.1;locus_tag=NDY25_16050;product=cysteine synthase A;protein_id=UUF01457.1;transl_table=11 CP098604.1 Genbank gene 3720673 3721878 . - . ID=gene-NDY25_16055;Name=cobA;gbkey=Gene;gene=cobA;gene_biotype=protein_coding;locus_tag=NDY25_16055 CP098604.1 Protein Homology CDS 3720673 3721878 . - 0 ID=cds-UUF01458.1;Parent=gene-NDY25_16055;Dbxref=NCBI_GP:UUF01458.1;Name=UUF01458.1;Ontology_term=GO:0019354,GO:0004851;gbkey=CDS;gene=cobA;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922380.1;locus_tag=NDY25_16055;product=uroporphyrinogen-III C-methyltransferase;protein_id=UUF01458.1;transl_table=11 CP098604.1 Genbank gene 3722041 3723024 . + . ID=gene-NDY25_16060;Name=NDY25_16060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16060 CP098604.1 Protein Homology CDS 3722041 3723024 . + 0 ID=cds-UUF01459.1;Parent=gene-NDY25_16060;Dbxref=NCBI_GP:UUF01459.1;Name=UUF01459.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477207.1;locus_tag=NDY25_16060;product=LysR family transcriptional regulator;protein_id=UUF01459.1;transl_table=11 CP098604.1 Genbank gene 3723880 3724161 . + . ID=gene-NDY25_16065;Name=NDY25_16065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16065 CP098604.1 Protein Homology CDS 3723880 3724161 . + 0 ID=cds-UUF04685.1;Parent=gene-NDY25_16065;Dbxref=NCBI_GP:UUF04685.1;Name=UUF04685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850560.1;locus_tag=NDY25_16065;product=hypothetical protein;protein_id=UUF04685.1;transl_table=11 CP098604.1 Genbank gene 3724625 3725818 . - . ID=gene-NDY25_16070;Name=NDY25_16070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16070 CP098604.1 Protein Homology CDS 3724625 3725818 . - 0 ID=cds-UUF01460.1;Parent=gene-NDY25_16070;Dbxref=NCBI_GP:UUF01460.1;Name=UUF01460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944620.1;locus_tag=NDY25_16070;product=HAMP domain-containing histidine kinase;protein_id=UUF01460.1;transl_table=11 CP098604.1 Genbank gene 3726110 3726547 . + . ID=gene-NDY25_16075;Name=NDY25_16075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16075 CP098604.1 Protein Homology CDS 3726110 3726547 . + 0 ID=cds-UUF01461.1;Parent=gene-NDY25_16075;Dbxref=NCBI_GP:UUF01461.1;Name=UUF01461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452710.1;locus_tag=NDY25_16075;product=DUF2946 family protein;protein_id=UUF01461.1;transl_table=11 CP098604.1 Genbank gene 3726743 3728743 . + . ID=gene-NDY25_16080;Name=NDY25_16080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16080 CP098604.1 Protein Homology CDS 3726743 3728743 . + 0 ID=cds-UUF04686.1;Parent=gene-NDY25_16080;Dbxref=NCBI_GP:UUF04686.1;Name=UUF04686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155471.1;locus_tag=NDY25_16080;product=TonB-dependent receptor;protein_id=UUF04686.1;transl_table=11 CP098604.1 Genbank pseudogene 3728743 3730493 . + . ID=gene-NDY25_16085;Name=NDY25_16085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16085;pseudo=true CP098604.1 Protein Homology CDS 3728743 3730493 . + 0 ID=cds-NDY25_16085;Parent=gene-NDY25_16085;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114669.1;locus_tag=NDY25_16085;product=PepSY domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3730658 3731383 . - . ID=gene-NDY25_16090;Name=NDY25_16090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16090 CP098604.1 Protein Homology CDS 3730658 3731383 . - 0 ID=cds-UUF01462.1;Parent=gene-NDY25_16090;Dbxref=NCBI_GP:UUF01462.1;Name=UUF01462.1;Ontology_term=GO:0019379,GO:0003824,GO:0004604;gbkey=CDS;go_function=catalytic activity|0003824||IEA,phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038282.1;locus_tag=NDY25_16090;product=phosphoadenylyl-sulfate reductase;protein_id=UUF01462.1;transl_table=11 CP098604.1 Genbank gene 3731380 3733086 . - . ID=gene-NDY25_16095;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=NDY25_16095 CP098604.1 Protein Homology CDS 3731380 3733086 . - 0 ID=cds-UUF01463.1;Parent=gene-NDY25_16095;Dbxref=NCBI_GP:UUF01463.1;Name=UUF01463.1;Ontology_term=GO:0000103,GO:0004783;gbkey=CDS;gene=cysI;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802589.1;locus_tag=NDY25_16095;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=UUF01463.1;transl_table=11 CP098604.1 Genbank gene 3733195 3735042 . - . ID=gene-NDY25_16100;Name=NDY25_16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16100 CP098604.1 Protein Homology CDS 3733195 3735042 . - 0 ID=cds-UUF01464.1;Parent=gene-NDY25_16100;Dbxref=NCBI_GP:UUF01464.1;Name=UUF01464.1;Ontology_term=GO:0006790,GO:0004783,GO:0009337;gbkey=CDS;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504375.1;locus_tag=NDY25_16100;product=assimilatory sulfite reductase (NADPH) flavoprotein subunit;protein_id=UUF01464.1;transl_table=11 CP098604.1 Genbank gene 3735221 3736129 . + . ID=gene-NDY25_16105;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=NDY25_16105 CP098604.1 Protein Homology CDS 3735221 3736129 . + 0 ID=cds-UUF01465.1;Parent=gene-NDY25_16105;Dbxref=NCBI_GP:UUF01465.1;Name=UUF01465.1;Ontology_term=GO:0019419,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate reduction|0019419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370926.1;locus_tag=NDY25_16105;product=sulfate adenylyltransferase subunit CysD;protein_id=UUF01465.1;transl_table=11 CP098604.1 Genbank gene 3736189 3738105 . + . ID=gene-NDY25_16110;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=NDY25_16110 CP098604.1 Protein Homology CDS 3736189 3738105 . + 0 ID=cds-UUF01466.1;Parent=gene-NDY25_16110;Dbxref=NCBI_GP:UUF01466.1;Name=UUF01466.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930397.1;locus_tag=NDY25_16110;product=sulfate adenylyltransferase subunit CysN;protein_id=UUF01466.1;transl_table=11 CP098604.1 Genbank gene 3738224 3739309 . + . ID=gene-NDY25_16115;Name=NDY25_16115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16115 CP098604.1 Protein Homology CDS 3738224 3739309 . + 0 ID=cds-UUF01467.1;Parent=gene-NDY25_16115;Dbxref=NCBI_GP:UUF01467.1;Name=UUF01467.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450709.1;locus_tag=NDY25_16115;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF01467.1;transl_table=11 CP098604.1 Genbank gene 3739306 3742431 . + . ID=gene-NDY25_16120;Name=NDY25_16120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16120 CP098604.1 Protein Homology CDS 3739306 3742431 . + 0 ID=cds-UUF01468.1;Parent=gene-NDY25_16120;Dbxref=NCBI_GP:UUF01468.1;Name=UUF01468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010370936.1;locus_tag=NDY25_16120;product=efflux RND transporter permease subunit;protein_id=UUF01468.1;transl_table=11 CP098604.1 Genbank gene 3742591 3743949 . - . ID=gene-NDY25_16125;Name=NDY25_16125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16125 CP098604.1 Protein Homology CDS 3742591 3743949 . - 0 ID=cds-UUF01469.1;Parent=gene-NDY25_16125;Dbxref=NCBI_GP:UUF01469.1;Name=UUF01469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914524.1;locus_tag=NDY25_16125;product=hypothetical protein;protein_id=UUF01469.1;transl_table=11 CP098604.1 Genbank gene 3743963 3744942 . - . ID=gene-NDY25_16130;Name=NDY25_16130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16130 CP098604.1 Protein Homology CDS 3744231 3744942 . - 0 ID=cds-UUF01470.1;Parent=gene-NDY25_16130;Dbxref=NCBI_GP:UUF01470.1;Name=UUF01470.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_16130;product=IS5 family transposase;protein_id=UUF01470.1;transl_table=11 CP098604.1 Protein Homology CDS 3743963 3744231 . - 2 ID=cds-UUF01470.1;Parent=gene-NDY25_16130;Dbxref=NCBI_GP:UUF01470.1;Name=UUF01470.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_16130;product=IS5 family transposase;protein_id=UUF01470.1;transl_table=11 CP098604.1 Genbank gene 3745430 3746305 . + . ID=gene-NDY25_16135;Name=NDY25_16135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16135 CP098604.1 Protein Homology CDS 3745430 3746305 . + 0 ID=cds-UUF01471.1;Parent=gene-NDY25_16135;Dbxref=NCBI_GP:UUF01471.1;Name=UUF01471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010375549.1;locus_tag=NDY25_16135;product=TauD/TfdA family dioxygenase;protein_id=UUF01471.1;transl_table=11 CP098604.1 Genbank pseudogene 3746298 3747340 . + . ID=gene-NDY25_16140;Name=NDY25_16140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16140;pseudo=true CP098604.1 Protein Homology CDS 3746298 3747340 . + 0 ID=cds-NDY25_16140;Parent=gene-NDY25_16140;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971047.1;locus_tag=NDY25_16140;product=sulfotransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3747402 3748580 . + . ID=gene-NDY25_16145;Name=NDY25_16145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16145 CP098604.1 Protein Homology CDS 3747402 3748580 . + 0 ID=cds-UUF04687.1;Parent=gene-NDY25_16145;Dbxref=NCBI_GP:UUF04687.1;Name=UUF04687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172160.1;locus_tag=NDY25_16145;product=aspartate aminotransferase family protein;protein_id=UUF04687.1;transl_table=11 CP098604.1 Genbank gene 3748607 3749266 . + . ID=gene-NDY25_16150;Name=NDY25_16150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16150 CP098604.1 Protein Homology CDS 3748607 3749266 . + 0 ID=cds-UUF01472.1;Parent=gene-NDY25_16150;Dbxref=NCBI_GP:UUF01472.1;Name=UUF01472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971045.1;locus_tag=NDY25_16150;product=2OG-Fe(II) oxygenase;protein_id=UUF01472.1;transl_table=11 CP098604.1 Genbank pseudogene 3749274 3749816 . + . ID=gene-NDY25_16155;Name=NDY25_16155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16155;pseudo=true CP098604.1 Protein Homology CDS 3749274 3749816 . + 0 ID=cds-NDY25_16155;Parent=gene-NDY25_16155;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158593.1;locus_tag=NDY25_16155;product=AAA family ATPase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3750322 3750498 . + . ID=gene-NDY25_16160;Name=NDY25_16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16160 CP098604.1 Protein Homology CDS 3750322 3750498 . + 0 ID=cds-UUF04688.1;Parent=gene-NDY25_16160;Dbxref=NCBI_GP:UUF04688.1;Name=UUF04688.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013676.2;locus_tag=NDY25_16160;product=transposase;protein_id=UUF04688.1;transl_table=11 CP098604.1 Genbank gene 3751340 3752353 . + . ID=gene-NDY25_16165;Name=NDY25_16165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16165 CP098604.1 GeneMarkS-2+ CDS 3751340 3752353 . + 0 ID=cds-UUF01473.1;Parent=gene-NDY25_16165;Dbxref=NCBI_GP:UUF01473.1;Name=UUF01473.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16165;product=hypothetical protein;protein_id=UUF01473.1;transl_table=11 CP098604.1 Genbank gene 3752626 3753606 . + . ID=gene-NDY25_16170;Name=NDY25_16170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16170 CP098604.1 Protein Homology CDS 3752626 3753606 . + 0 ID=cds-UUF01474.1;Parent=gene-NDY25_16170;Dbxref=NCBI_GP:UUF01474.1;Name=UUF01474.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_16170;product=IS5 family transposase;protein_id=UUF01474.1;transl_table=11 CP098604.1 Genbank gene 3754408 3754578 . - . ID=gene-NDY25_16175;Name=NDY25_16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16175 CP098604.1 GeneMarkS-2+ CDS 3754408 3754578 . - 0 ID=cds-UUF01475.1;Parent=gene-NDY25_16175;Dbxref=NCBI_GP:UUF01475.1;Name=UUF01475.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16175;product=hypothetical protein;protein_id=UUF01475.1;transl_table=11 CP098604.1 Genbank pseudogene 3755005 3755109 . + . ID=gene-NDY25_16180;Name=NDY25_16180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16180;pseudo=true CP098604.1 Protein Homology CDS 3755005 3755109 . + 0 ID=cds-NDY25_16180;Parent=gene-NDY25_16180;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF037667.2;locus_tag=NDY25_16180;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 3755228 3756246 . + . ID=gene-NDY25_16185;Name=NDY25_16185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16185;pseudo=true CP098604.1 Protein Homology CDS 3755228 3756246 . + 0 ID=cds-NDY25_16185;Parent=gene-NDY25_16185;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF037667.2;locus_tag=NDY25_16185;product=M1 family metallopeptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3756520 3757578 . + . ID=gene-NDY25_16190;Name=NDY25_16190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16190 CP098604.1 Protein Homology CDS 3756520 3757578 . + 0 ID=cds-UUF04689.1;Parent=gene-NDY25_16190;Dbxref=NCBI_GP:UUF04689.1;Name=UUF04689.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023266.2;locus_tag=NDY25_16190;product=ERAP1-like C-terminal domain-containing protein;protein_id=UUF04689.1;transl_table=11 CP098604.1 Genbank pseudogene 3757646 3757806 . + . ID=gene-NDY25_16195;Name=NDY25_16195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16195;pseudo=true CP098604.1 Protein Homology CDS 3757646 3757806 . + 0 ID=cds-NDY25_16195;Parent=gene-NDY25_16195;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010377976.1;locus_tag=NDY25_16195;product=GNAT family N-acetyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3758049 3758972 . + . ID=gene-NDY25_16200;Name=NDY25_16200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16200 CP098604.1 Protein Homology CDS 3758049 3758972 . + 0 ID=cds-UUF01476.1;Parent=gene-NDY25_16200;Dbxref=NCBI_GP:UUF01476.1;Name=UUF01476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904161.1;locus_tag=NDY25_16200;product=RNA methyltransferase;protein_id=UUF01476.1;transl_table=11 CP098604.1 Genbank gene 3758969 3760483 . + . ID=gene-NDY25_16205;Name=NDY25_16205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16205 CP098604.1 Protein Homology CDS 3758969 3760483 . + 0 ID=cds-UUF04690.1;Parent=gene-NDY25_16205;Dbxref=NCBI_GP:UUF04690.1;Name=UUF04690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155458.1;locus_tag=NDY25_16205;product=carboxylesterase family protein;protein_id=UUF04690.1;transl_table=11 CP098604.1 Genbank gene 3760548 3761690 . - . ID=gene-NDY25_16210;Name=NDY25_16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16210 CP098604.1 Protein Homology CDS 3760548 3761690 . - 0 ID=cds-UUF01477.1;Parent=gene-NDY25_16210;Dbxref=NCBI_GP:UUF01477.1;Name=UUF01477.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015066.2;locus_tag=NDY25_16210;product=neprosin family prolyl endopeptidase;protein_id=UUF01477.1;transl_table=11 CP098604.1 Genbank gene 3761801 3761959 . + . ID=gene-NDY25_16215;Name=NDY25_16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16215 CP098604.1 GeneMarkS-2+ CDS 3761801 3761959 . + 0 ID=cds-UUF01478.1;Parent=gene-NDY25_16215;Dbxref=NCBI_GP:UUF01478.1;Name=UUF01478.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16215;product=hypothetical protein;protein_id=UUF01478.1;transl_table=11 CP098604.1 Genbank gene 3762344 3764308 . - . ID=gene-NDY25_16220;Name=NDY25_16220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16220 CP098604.1 Protein Homology CDS 3762344 3764308 . - 0 ID=cds-UUF01479.1;Parent=gene-NDY25_16220;Dbxref=NCBI_GP:UUF01479.1;Name=UUF01479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155457.1;locus_tag=NDY25_16220;product=glycoside hydrolase family 97 protein;protein_id=UUF01479.1;transl_table=11 CP098604.1 Genbank gene 3764528 3767995 . + . ID=gene-NDY25_16225;Name=NDY25_16225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16225 CP098604.1 Protein Homology CDS 3764528 3767995 . + 0 ID=cds-UUF01480.1;Parent=gene-NDY25_16225;Dbxref=NCBI_GP:UUF01480.1;Name=UUF01480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159185.1;locus_tag=NDY25_16225;product=glycoside hydrolase family 2;protein_id=UUF01480.1;transl_table=11 CP098604.1 Genbank gene 3768136 3771072 . + . ID=gene-NDY25_16230;Name=NDY25_16230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16230 CP098604.1 Protein Homology CDS 3768136 3771072 . + 0 ID=cds-UUF01481.1;Parent=gene-NDY25_16230;Dbxref=NCBI_GP:UUF01481.1;Name=UUF01481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038268.1;locus_tag=NDY25_16230;product=TonB-dependent receptor;protein_id=UUF01481.1;transl_table=11 CP098604.1 Genbank gene 3771311 3772363 . - . ID=gene-NDY25_16235;Name=NDY25_16235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16235 CP098604.1 Protein Homology CDS 3771311 3772363 . - 0 ID=cds-UUF01482.1;Parent=gene-NDY25_16235;Dbxref=NCBI_GP:UUF01482.1;Name=UUF01482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903335.1;locus_tag=NDY25_16235;product=LacI family DNA-binding transcriptional regulator;protein_id=UUF01482.1;transl_table=11 CP098604.1 Genbank gene 3772559 3773977 . - . ID=gene-NDY25_16240;Name=NDY25_16240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16240 CP098604.1 Protein Homology CDS 3772559 3773977 . - 0 ID=cds-UUF01483.1;Parent=gene-NDY25_16240;Dbxref=NCBI_GP:UUF01483.1;Name=UUF01483.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162741.1;locus_tag=NDY25_16240;product=M20/M25/M40 family metallo-hydrolase;protein_id=UUF01483.1;transl_table=11 CP098604.1 Genbank gene 3774088 3774519 . - . ID=gene-NDY25_16245;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=NDY25_16245 CP098604.1 Protein Homology CDS 3774088 3774519 . - 0 ID=cds-UUF01484.1;Parent=gene-NDY25_16245;Dbxref=NCBI_GP:UUF01484.1;Name=UUF01484.1;Ontology_term=GO:0034220,GO:0008381;gbkey=CDS;gene=mscL;go_function=mechanosensitive ion channel activity|0008381||IEA;go_process=ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437543.1;locus_tag=NDY25_16245;product=large-conductance mechanosensitive channel protein MscL;protein_id=UUF01484.1;transl_table=11 CP098604.1 Genbank gene 3774580 3775293 . - . ID=gene-NDY25_16250;Name=NDY25_16250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16250 CP098604.1 Protein Homology CDS 3774580 3775293 . - 0 ID=cds-UUF01485.1;Parent=gene-NDY25_16250;Dbxref=NCBI_GP:UUF01485.1;Name=UUF01485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052181.1;locus_tag=NDY25_16250;product=fumarylacetoacetate hydrolase family protein;protein_id=UUF01485.1;transl_table=11 CP098604.1 Genbank gene 3775382 3775657 . - . ID=gene-NDY25_16255;Name=NDY25_16255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16255 CP098604.1 Protein Homology CDS 3775382 3775657 . - 0 ID=cds-UUF01486.1;Parent=gene-NDY25_16255;Dbxref=NCBI_GP:UUF01486.1;Name=UUF01486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259856.1;locus_tag=NDY25_16255;product=hypothetical protein;protein_id=UUF01486.1;transl_table=11 CP098604.1 Genbank gene 3775920 3776261 . + . ID=gene-NDY25_16260;Name=NDY25_16260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16260 CP098604.1 Protein Homology CDS 3775920 3776261 . + 0 ID=cds-UUF01487.1;Parent=gene-NDY25_16260;Dbxref=NCBI_GP:UUF01487.1;Name=UUF01487.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851334.1;locus_tag=NDY25_16260;product=Rieske (2Fe-2S) protein;protein_id=UUF01487.1;transl_table=11 CP098604.1 Genbank gene 3776394 3778256 . - . ID=gene-NDY25_16265;Name=NDY25_16265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16265 CP098604.1 Protein Homology CDS 3776394 3778256 . - 0 ID=cds-UUF01488.1;Parent=gene-NDY25_16265;Dbxref=NCBI_GP:UUF01488.1;Name=UUF01488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237329.1;locus_tag=NDY25_16265;product=SLC13 family permease;protein_id=UUF01488.1;transl_table=11 CP098604.1 Genbank gene 3778325 3779110 . - . ID=gene-NDY25_16270;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=NDY25_16270 CP098604.1 Protein Homology CDS 3778325 3779110 . - 0 ID=cds-UUF01489.1;Parent=gene-NDY25_16270;Dbxref=NCBI_GP:UUF01489.1;Name=UUF01489.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine-N7-)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508746.1;locus_tag=NDY25_16270;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=UUF01489.1;transl_table=11 CP098604.1 Genbank gene 3779361 3780155 . - . ID=gene-NDY25_16275;Name=NDY25_16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16275 CP098604.1 Protein Homology CDS 3779361 3780155 . - 0 ID=cds-UUF01490.1;Parent=gene-NDY25_16275;Dbxref=NCBI_GP:UUF01490.1;Name=UUF01490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487184.1;locus_tag=NDY25_16275;product=thiazole synthase;protein_id=UUF01490.1;transl_table=11 CP098604.1 Genbank gene 3780205 3780405 . - . ID=gene-NDY25_16280;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=NDY25_16280 CP098604.1 Protein Homology CDS 3780205 3780405 . - 0 ID=cds-UUF01491.1;Parent=gene-NDY25_16280;Dbxref=NCBI_GP:UUF01491.1;Name=UUF01491.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903326.1;locus_tag=NDY25_16280;product=sulfur carrier protein ThiS;protein_id=UUF01491.1;transl_table=11 CP098604.1 Genbank gene 3780596 3782380 . + . ID=gene-NDY25_16285;Name=NDY25_16285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16285 CP098604.1 Protein Homology CDS 3780596 3782380 . + 0 ID=cds-UUF04691.1;Parent=gene-NDY25_16285;Dbxref=NCBI_GP:UUF04691.1;Name=UUF04691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914545.1;locus_tag=NDY25_16285;product=autotransporter domain-containing protein;protein_id=UUF04691.1;transl_table=11 CP098604.1 Genbank gene 3782502 3782575 . + . ID=gene-NDY25_16290;Name=NDY25_16290;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_16290 CP098604.1 tRNAscan-SE tRNA 3782502 3782575 . + . ID=rna-NDY25_16290;Parent=gene-NDY25_16290;anticodon=(pos:3782534..3782536);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_16290;product=tRNA-Gly CP098604.1 tRNAscan-SE exon 3782502 3782575 . + . ID=exon-NDY25_16290-1;Parent=rna-NDY25_16290;anticodon=(pos:3782534..3782536);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_16290;product=tRNA-Gly CP098604.1 Genbank pseudogene 3782624 3784164 . + . ID=gene-NDY25_16295;Name=NDY25_16295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16295;pseudo=true CP098604.1 Protein Homology CDS 3782624 3784164 . + 0 ID=cds-NDY25_16295;Parent=gene-NDY25_16295;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159187.1;locus_tag=NDY25_16295;product=site-specific integrase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3784270 3784761 . + . ID=gene-NDY25_16300;Name=NDY25_16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16300 CP098604.1 GeneMarkS-2+ CDS 3784270 3784761 . + 0 ID=cds-UUF01492.1;Parent=gene-NDY25_16300;Dbxref=NCBI_GP:UUF01492.1;Name=UUF01492.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16300;product=hypothetical protein;protein_id=UUF01492.1;transl_table=11 CP098604.1 Genbank pseudogene 3785030 3785421 . + . ID=gene-NDY25_16305;Name=NDY25_16305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16305;pseudo=true CP098604.1 Protein Homology CDS 3785030 3785421 . + 0 ID=cds-NDY25_16305;Parent=gene-NDY25_16305;Note=frameshifted%3B internal stop;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806144.1;locus_tag=NDY25_16305;product=H-NS histone family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3785636 3785842 . - . ID=gene-NDY25_16310;Name=NDY25_16310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16310 CP098604.1 GeneMarkS-2+ CDS 3785636 3785842 . - 0 ID=cds-UUF01493.1;Parent=gene-NDY25_16310;Dbxref=NCBI_GP:UUF01493.1;Name=UUF01493.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16310;product=hypothetical protein;protein_id=UUF01493.1;transl_table=11 CP098604.1 Genbank gene 3785839 3786279 . - . ID=gene-NDY25_16315;Name=NDY25_16315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16315 CP098604.1 GeneMarkS-2+ CDS 3785839 3786279 . - 0 ID=cds-UUF01494.1;Parent=gene-NDY25_16315;Dbxref=NCBI_GP:UUF01494.1;Name=UUF01494.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16315;product=hypothetical protein;protein_id=UUF01494.1;transl_table=11 CP098604.1 Genbank gene 3786284 3787957 . - . ID=gene-NDY25_16320;Name=NDY25_16320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16320 CP098604.1 Protein Homology CDS 3786284 3787957 . - 0 ID=cds-UUF01495.1;Parent=gene-NDY25_16320;Dbxref=NCBI_GP:UUF01495.1;Name=UUF01495.1;Ontology_term=GO:0006164,GO:0004019,GO:0005525;gbkey=CDS;go_function=adenylosuccinate synthase activity|0004019||IEA,GTP binding|0005525||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: protein motif:HMM:NF012912.2;locus_tag=NDY25_16320;product=adenylosuccinate synthetase;protein_id=UUF01495.1;transl_table=11 CP098604.1 Genbank gene 3787960 3788496 . - . ID=gene-NDY25_16325;Name=NDY25_16325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16325 CP098604.1 GeneMarkS-2+ CDS 3787960 3788496 . - 0 ID=cds-UUF01496.1;Parent=gene-NDY25_16325;Dbxref=NCBI_GP:UUF01496.1;Name=UUF01496.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16325;product=ATP-binding protein;protein_id=UUF01496.1;transl_table=11 CP098604.1 Genbank gene 3789693 3790088 . + . ID=gene-NDY25_16330;Name=NDY25_16330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16330 CP098604.1 Protein Homology CDS 3789693 3790088 . + 0 ID=cds-UUF01497.1;Parent=gene-NDY25_16330;Dbxref=NCBI_GP:UUF01497.1;Name=UUF01497.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089881.1;locus_tag=NDY25_16330;product=H-NS histone family protein;protein_id=UUF01497.1;transl_table=11 CP098604.1 Genbank pseudogene 3790165 3790901 . - . ID=gene-NDY25_16335;Name=NDY25_16335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16335;pseudo=true CP098604.1 Protein Homology CDS 3790165 3790901 . - 0 ID=cds-NDY25_16335;Parent=gene-NDY25_16335;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449698.1;locus_tag=NDY25_16335;product=DNA/RNA non-specific endonuclease;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3791230 3791466 . + . ID=gene-NDY25_16340;Name=NDY25_16340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16340 CP098604.1 Protein Homology CDS 3791230 3791466 . + 0 ID=cds-UUF01498.1;Parent=gene-NDY25_16340;Dbxref=NCBI_GP:UUF01498.1;Name=UUF01498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507432.1;locus_tag=NDY25_16340;product=hypothetical protein;protein_id=UUF01498.1;transl_table=11 CP098604.1 Genbank pseudogene 3791565 3792526 . - . ID=gene-NDY25_16345;Name=NDY25_16345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16345;pseudo=true CP098604.1 Protein Homology CDS 3791565 3792526 . - 0 ID=cds-NDY25_16345;Parent=gene-NDY25_16345;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_16345;product=IS1595 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 3792599 3792697 . + . ID=gene-NDY25_16350;Name=NDY25_16350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16350;pseudo=true CP098604.1 Protein Homology CDS 3792599 3792697 . + 0 ID=cds-NDY25_16350;Parent=gene-NDY25_16350;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013677.2;locus_tag=NDY25_16350;product=transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3792789 3793652 . + . ID=gene-NDY25_16355;Name=NDY25_16355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16355 CP098604.1 Protein Homology CDS 3792789 3793652 . + 0 ID=cds-UUF01499.1;Parent=gene-NDY25_16355;Dbxref=NCBI_GP:UUF01499.1;Name=UUF01499.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: protein motif:HMM:NF033516.0;locus_tag=NDY25_16355;product=IS3 family transposase;protein_id=UUF01499.1;transl_table=11 CP098604.1 Genbank gene 3793613 3794584 . - . ID=gene-NDY25_16360;Name=NDY25_16360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16360 CP098604.1 Protein Homology CDS 3793613 3794584 . - 0 ID=cds-UUF01500.1;Parent=gene-NDY25_16360;Dbxref=NCBI_GP:UUF01500.1;Name=UUF01500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923919.1;locus_tag=NDY25_16360;product=DUF692 domain-containing protein;protein_id=UUF01500.1;transl_table=11 CP098604.1 Genbank gene 3794600 3796663 . - . ID=gene-NDY25_16365;Name=NDY25_16365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16365 CP098604.1 Protein Homology CDS 3794600 3796663 . - 0 ID=cds-UUF01501.1;Parent=gene-NDY25_16365;Dbxref=NCBI_GP:UUF01501.1;Name=UUF01501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923916.1;locus_tag=NDY25_16365;product=ferritin-like protein;protein_id=UUF01501.1;transl_table=11 CP098604.1 Genbank gene 3797287 3797919 . + . ID=gene-NDY25_16370;Name=NDY25_16370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16370 CP098604.1 Protein Homology CDS 3797287 3797919 . + 0 ID=cds-UUF01502.1;Parent=gene-NDY25_16370;Dbxref=NCBI_GP:UUF01502.1;Name=UUF01502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172662.1;locus_tag=NDY25_16370;product=hypothetical protein;protein_id=UUF01502.1;transl_table=11 CP098604.1 Genbank gene 3798027 3798701 . + . ID=gene-NDY25_16375;Name=NDY25_16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16375 CP098604.1 Protein Homology CDS 3798027 3798701 . + 0 ID=cds-UUF01503.1;Parent=gene-NDY25_16375;Dbxref=NCBI_GP:UUF01503.1;Name=UUF01503.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914554.1;locus_tag=NDY25_16375;product=hypothetical protein;protein_id=UUF01503.1;transl_table=11 CP098604.1 Genbank gene 3798839 3799072 . + . ID=gene-NDY25_16380;Name=NDY25_16380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16380 CP098604.1 Protein Homology CDS 3798839 3799072 . + 0 ID=cds-UUF01504.1;Parent=gene-NDY25_16380;Dbxref=NCBI_GP:UUF01504.1;Name=UUF01504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172608.1;locus_tag=NDY25_16380;product=hypothetical protein;protein_id=UUF01504.1;transl_table=11 CP098604.1 Genbank gene 3799165 3800232 . + . ID=gene-NDY25_16385;Name=NDY25_16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16385 CP098604.1 Protein Homology CDS 3799165 3800232 . + 0 ID=cds-UUF01505.1;Parent=gene-NDY25_16385;Dbxref=NCBI_GP:UUF01505.1;Name=UUF01505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448333.1;locus_tag=NDY25_16385;product=ankyrin repeat domain-containing protein;protein_id=UUF01505.1;transl_table=11 CP098604.1 Genbank gene 3800478 3801404 . - . ID=gene-NDY25_16390;Name=NDY25_16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16390 CP098604.1 Protein Homology CDS 3800478 3801404 . - 0 ID=cds-UUF01506.1;Parent=gene-NDY25_16390;Dbxref=NCBI_GP:UUF01506.1;Name=UUF01506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848973.1;locus_tag=NDY25_16390;product=hypothetical protein;protein_id=UUF01506.1;transl_table=11 CP098604.1 Genbank gene 3801549 3803129 . - . ID=gene-NDY25_16395;Name=NDY25_16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16395 CP098604.1 Protein Homology CDS 3801549 3803129 . - 0 ID=cds-UUF01507.1;Parent=gene-NDY25_16395;Dbxref=NCBI_GP:UUF01507.1;Name=UUF01507.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025638.2;locus_tag=NDY25_16395;product=DUF4365 domain-containing protein;protein_id=UUF01507.1;transl_table=11 CP098604.1 Genbank gene 3803332 3804063 . - . ID=gene-NDY25_16400;Name=NDY25_16400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16400 CP098604.1 Protein Homology CDS 3803332 3804063 . - 0 ID=cds-UUF01508.1;Parent=gene-NDY25_16400;Dbxref=NCBI_GP:UUF01508.1;Name=UUF01508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969781.1;locus_tag=NDY25_16400;product=hypothetical protein;protein_id=UUF01508.1;transl_table=11 CP098604.1 Genbank gene 3804078 3806276 . - . ID=gene-NDY25_16405;Name=NDY25_16405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16405 CP098604.1 Protein Homology CDS 3804078 3806276 . - 0 ID=cds-UUF01509.1;Parent=gene-NDY25_16405;Dbxref=NCBI_GP:UUF01509.1;Name=UUF01509.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172610.1;locus_tag=NDY25_16405;product=DEAD/DEAH box helicase;protein_id=UUF01509.1;transl_table=11 CP098604.1 Genbank gene 3806280 3806942 . - . ID=gene-NDY25_16410;Name=NDY25_16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16410 CP098604.1 Protein Homology CDS 3806280 3806942 . - 0 ID=cds-UUF04692.1;Parent=gene-NDY25_16410;Dbxref=NCBI_GP:UUF04692.1;Name=UUF04692.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022376.2;locus_tag=NDY25_16410;product=ATP-binding protein;protein_id=UUF04692.1;transl_table=11 CP098604.1 Genbank gene 3806945 3807925 . + . ID=gene-NDY25_16415;Name=NDY25_16415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16415 CP098604.1 Protein Homology CDS 3806945 3807925 . + 0 ID=cds-UUF01510.1;Parent=gene-NDY25_16415;Dbxref=NCBI_GP:UUF01510.1;Name=UUF01510.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_16415;product=IS5 family transposase;protein_id=UUF01510.1;transl_table=11 CP098604.1 Genbank gene 3808015 3808740 . - . ID=gene-NDY25_16420;Name=NDY25_16420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16420 CP098604.1 Protein Homology CDS 3808015 3808740 . - 0 ID=cds-UUF01511.1;Parent=gene-NDY25_16420;Dbxref=NCBI_GP:UUF01511.1;Name=UUF01511.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022376.2;locus_tag=NDY25_16420;product=ATP-binding protein;protein_id=UUF01511.1;transl_table=11 CP098604.1 Genbank gene 3808737 3811931 . - . ID=gene-NDY25_16425;Name=NDY25_16425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16425 CP098604.1 Protein Homology CDS 3808737 3811931 . - 0 ID=cds-UUF01512.1;Parent=gene-NDY25_16425;Dbxref=NCBI_GP:UUF01512.1;Name=UUF01512.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024606.2;locus_tag=NDY25_16425;product=TerB N-terminal domain-containing protein;protein_id=UUF01512.1;transl_table=11 CP098604.1 Genbank gene 3812106 3814679 . + . ID=gene-NDY25_16430;Name=NDY25_16430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16430 CP098604.1 Protein Homology CDS 3812106 3814679 . + 0 ID=cds-UUF01513.1;Parent=gene-NDY25_16430;Dbxref=NCBI_GP:UUF01513.1;Name=UUF01513.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172675.1;locus_tag=NDY25_16430;product=AAA family ATPase;protein_id=UUF01513.1;transl_table=11 CP098604.1 Genbank pseudogene 3815106 3816086 . + . ID=gene-NDY25_16435;Name=NDY25_16435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16435;pseudo=true CP098604.1 Protein Homology CDS 3815106 3816086 . + 0 ID=cds-NDY25_16435;Parent=gene-NDY25_16435;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_16435;product=IS5 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3817117 3817584 . - . ID=gene-NDY25_16440;Name=NDY25_16440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16440 CP098604.1 GeneMarkS-2+ CDS 3817117 3817584 . - 0 ID=cds-UUF01514.1;Parent=gene-NDY25_16440;Dbxref=NCBI_GP:UUF01514.1;Name=UUF01514.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16440;product=hypothetical protein;protein_id=UUF01514.1;transl_table=11 CP098604.1 Genbank gene 3817658 3817906 . - . ID=gene-NDY25_16445;Name=NDY25_16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16445 CP098604.1 GeneMarkS-2+ CDS 3817658 3817906 . - 0 ID=cds-UUF01515.1;Parent=gene-NDY25_16445;Dbxref=NCBI_GP:UUF01515.1;Name=UUF01515.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16445;product=hypothetical protein;protein_id=UUF01515.1;transl_table=11 CP098604.1 Genbank pseudogene 3818127 3818465 . - . ID=gene-NDY25_16450;Name=NDY25_16450;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16450;pseudo=true CP098604.1 Protein Homology CDS 3818127 3818465 . - 0 ID=cds-NDY25_16450;Parent=gene-NDY25_16450;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172674.1;locus_tag=NDY25_16450;product=integrase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3818465 3819547 . - . ID=gene-NDY25_16455;Name=NDY25_16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16455 CP098604.1 Protein Homology CDS 3818465 3819547 . - 0 ID=cds-UUF01516.1;Parent=gene-NDY25_16455;Dbxref=NCBI_GP:UUF01516.1;Name=UUF01516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924053.1;locus_tag=NDY25_16455;product=serine/threonine protein kinase;protein_id=UUF01516.1;transl_table=11 CP098604.1 Genbank gene 3819544 3820596 . - . ID=gene-NDY25_16460;Name=NDY25_16460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16460 CP098604.1 Protein Homology CDS 3819544 3820596 . - 0 ID=cds-UUF01517.1;Parent=gene-NDY25_16460;Dbxref=NCBI_GP:UUF01517.1;Name=UUF01517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448322.1;locus_tag=NDY25_16460;product=serine/threonine protein kinase;protein_id=UUF01517.1;transl_table=11 CP098604.1 Genbank gene 3820624 3821808 . - . ID=gene-NDY25_16465;Name=NDY25_16465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16465 CP098604.1 Protein Homology CDS 3820624 3821808 . - 0 ID=cds-UUF01518.1;Parent=gene-NDY25_16465;Dbxref=NCBI_GP:UUF01518.1;Name=UUF01518.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448321.1;locus_tag=NDY25_16465;product=protein phosphatase 2C domain-containing protein;protein_id=UUF01518.1;transl_table=11 CP098604.1 Genbank gene 3821955 3823346 . - . ID=gene-NDY25_16470;Name=NDY25_16470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16470 CP098604.1 Protein Homology CDS 3821955 3823346 . - 0 ID=cds-UUF01519.1;Parent=gene-NDY25_16470;Dbxref=NCBI_GP:UUF01519.1;Name=UUF01519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010362967.1;locus_tag=NDY25_16470;product=site-specific integrase;protein_id=UUF01519.1;transl_table=11 CP098604.1 Genbank gene 3823445 3824589 . + . ID=gene-NDY25_16475;Name=NDY25_16475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16475 CP098604.1 Protein Homology CDS 3823445 3823682 . + 0 ID=cds-UUF01520.1;Parent=gene-NDY25_16475;Dbxref=NCBI_GP:UUF01520.1;Name=UUF01520.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_16475;product=IS3 family transposase;protein_id=UUF01520.1;transl_table=11 CP098604.1 Protein Homology CDS 3823682 3824589 . + 2 ID=cds-UUF01520.1;Parent=gene-NDY25_16475;Dbxref=NCBI_GP:UUF01520.1;Name=UUF01520.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_16475;product=IS3 family transposase;protein_id=UUF01520.1;transl_table=11 CP098604.1 Genbank gene 3825355 3826518 . + . ID=gene-NDY25_16480;Name=NDY25_16480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16480 CP098604.1 GeneMarkS-2+ CDS 3825355 3826518 . + 0 ID=cds-UUF01521.1;Parent=gene-NDY25_16480;Dbxref=NCBI_GP:UUF01521.1;Name=UUF01521.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16480;product=hypothetical protein;protein_id=UUF01521.1;transl_table=11 CP098604.1 Genbank gene 3826543 3827181 . + . ID=gene-NDY25_16485;Name=NDY25_16485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16485 CP098604.1 GeneMarkS-2+ CDS 3826543 3827181 . + 0 ID=cds-UUF01522.1;Parent=gene-NDY25_16485;Dbxref=NCBI_GP:UUF01522.1;Name=UUF01522.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16485;product=hypothetical protein;protein_id=UUF01522.1;transl_table=11 CP098604.1 Genbank gene 3827437 3828141 . + . ID=gene-NDY25_16490;Name=NDY25_16490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16490 CP098604.1 GeneMarkS-2+ CDS 3827437 3828141 . + 0 ID=cds-UUF01523.1;Parent=gene-NDY25_16490;Dbxref=NCBI_GP:UUF01523.1;Name=UUF01523.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16490;product=hypothetical protein;protein_id=UUF01523.1;transl_table=11 CP098604.1 Genbank gene 3828224 3829114 . + . ID=gene-NDY25_16495;Name=NDY25_16495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16495 CP098604.1 Protein Homology CDS 3828224 3829114 . + 0 ID=cds-UUF01524.1;Parent=gene-NDY25_16495;Dbxref=NCBI_GP:UUF01524.1;Name=UUF01524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449054.1;locus_tag=NDY25_16495;product=MobA/MobL family protein;protein_id=UUF01524.1;transl_table=11 CP098604.1 Genbank gene 3829340 3829732 . - . ID=gene-NDY25_16500;Name=NDY25_16500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16500 CP098604.1 Protein Homology CDS 3829340 3829732 . - 0 ID=cds-UUF01525.1;Parent=gene-NDY25_16500;Dbxref=NCBI_GP:UUF01525.1;Name=UUF01525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996428.1;locus_tag=NDY25_16500;product=hypothetical protein;protein_id=UUF01525.1;transl_table=11 CP098604.1 Genbank pseudogene 3829782 3830092 . - . ID=gene-NDY25_16505;Name=NDY25_16505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16505;pseudo=true CP098604.1 Protein Homology CDS 3829782 3830092 . - 0 ID=cds-NDY25_16505;Parent=gene-NDY25_16505;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811379.1;locus_tag=NDY25_16505;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3830283 3830636 . + . ID=gene-NDY25_16510;Name=NDY25_16510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16510 CP098604.1 Protein Homology CDS 3830283 3830636 . + 0 ID=cds-UUF01526.1;Parent=gene-NDY25_16510;Dbxref=NCBI_GP:UUF01526.1;Name=UUF01526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923993.1;locus_tag=NDY25_16510;product=helix-turn-helix domain-containing protein;protein_id=UUF01526.1;transl_table=11 CP098604.1 Genbank gene 3830899 3832602 . + . ID=gene-NDY25_16515;Name=NDY25_16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16515 CP098604.1 Protein Homology CDS 3830899 3832602 . + 0 ID=cds-UUF01527.1;Parent=gene-NDY25_16515;Dbxref=NCBI_GP:UUF01527.1;Name=UUF01527.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811375.1;locus_tag=NDY25_16515;product=type IV secretory system conjugative DNA transfer family protein;protein_id=UUF01527.1;transl_table=11 CP098604.1 Genbank gene 3832647 3833102 . + . ID=gene-NDY25_16520;Name=NDY25_16520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16520 CP098604.1 Protein Homology CDS 3832647 3833102 . + 0 ID=cds-UUF01528.1;Parent=gene-NDY25_16520;Dbxref=NCBI_GP:UUF01528.1;Name=UUF01528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017464106.1;locus_tag=NDY25_16520;product=hypothetical protein;protein_id=UUF01528.1;transl_table=11 CP098604.1 Genbank gene 3833099 3836782 . + . ID=gene-NDY25_16525;Name=NDY25_16525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16525 CP098604.1 Protein Homology CDS 3833099 3836782 . + 0 ID=cds-UUF01529.1;Parent=gene-NDY25_16525;Dbxref=NCBI_GP:UUF01529.1;Name=UUF01529.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014509011.1;locus_tag=NDY25_16525;product=peptidoglycan-binding protein;protein_id=UUF01529.1;transl_table=11 CP098604.1 Genbank gene 3837086 3838384 . + . ID=gene-NDY25_16530;Name=NDY25_16530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16530 CP098604.1 Protein Homology CDS 3837086 3838384 . + 0 ID=cds-UUF01530.1;Parent=gene-NDY25_16530;Dbxref=NCBI_GP:UUF01530.1;Name=UUF01530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924029.1;locus_tag=NDY25_16530;product=HlyD family secretion protein;protein_id=UUF01530.1;transl_table=11 CP098604.1 Genbank gene 3838381 3840597 . + . ID=gene-NDY25_16535;Name=NDY25_16535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16535 CP098604.1 Protein Homology CDS 3838381 3840597 . + 0 ID=cds-UUF01531.1;Parent=gene-NDY25_16535;Dbxref=NCBI_GP:UUF01531.1;Name=UUF01531.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089914.1;locus_tag=NDY25_16535;product=peptidase domain-containing ABC transporter;protein_id=UUF01531.1;transl_table=11 CP098604.1 Genbank gene 3840704 3841516 . + . ID=gene-NDY25_16540;Name=NDY25_16540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16540 CP098604.1 Protein Homology CDS 3840704 3841516 . + 0 ID=cds-UUF01532.1;Parent=gene-NDY25_16540;Dbxref=NCBI_GP:UUF01532.1;Name=UUF01532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924034.1;locus_tag=NDY25_16540;product=hypothetical protein;protein_id=UUF01532.1;transl_table=11 CP098604.1 Genbank gene 3841557 3842081 . + . ID=gene-NDY25_16545;Name=NDY25_16545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16545 CP098604.1 Protein Homology CDS 3841557 3842081 . + 0 ID=cds-UUF01533.1;Parent=gene-NDY25_16545;Dbxref=NCBI_GP:UUF01533.1;Name=UUF01533.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450246.1;locus_tag=NDY25_16545;product=hypothetical protein;protein_id=UUF01533.1;transl_table=11 CP098604.1 Genbank gene 3842231 3843508 . - . ID=gene-NDY25_16550;Name=NDY25_16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16550 CP098604.1 Protein Homology CDS 3842231 3843508 . - 0 ID=cds-UUF01534.1;Parent=gene-NDY25_16550;Dbxref=NCBI_GP:UUF01534.1;Name=UUF01534.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269829.1;locus_tag=NDY25_16550;product=ABC transporter permease;protein_id=UUF01534.1;transl_table=11 CP098604.1 Genbank gene 3843571 3844002 . - . ID=gene-NDY25_16555;Name=NDY25_16555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16555 CP098604.1 Protein Homology CDS 3843571 3844002 . - 0 ID=cds-UUF01535.1;Parent=gene-NDY25_16555;Dbxref=NCBI_GP:UUF01535.1;Name=UUF01535.1;Ontology_term=GO:0009404,GO:0016746,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=acyltransferase activity|0016746||IEA;go_process=toxin metabolic process|0009404||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172654.1;locus_tag=NDY25_16555;product=toxin-activating lysine-acyltransferase;protein_id=UUF01535.1;transl_table=11 CP098604.1 Genbank gene 3843992 3845806 . - . ID=gene-NDY25_16560;Name=NDY25_16560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16560 CP098604.1 Protein Homology CDS 3843992 3845806 . - 0 ID=cds-UUF01536.1;Parent=gene-NDY25_16560;Dbxref=NCBI_GP:UUF01536.1;Name=UUF01536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490925.1;locus_tag=NDY25_16560;product=protein adenylyltransferase SelO family protein;protein_id=UUF01536.1;transl_table=11 CP098604.1 Genbank gene 3846300 3847943 . + . ID=gene-NDY25_16565;Name=NDY25_16565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16565 CP098604.1 Protein Homology CDS 3846300 3847943 . + 0 ID=cds-UUF01537.1;Parent=gene-NDY25_16565;Dbxref=NCBI_GP:UUF01537.1;Name=UUF01537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450242.1;locus_tag=NDY25_16565;product=MobA/MobL family protein;protein_id=UUF01537.1;transl_table=11 CP098604.1 Genbank gene 3848312 3849292 . - . ID=gene-NDY25_16570;Name=NDY25_16570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16570 CP098604.1 Protein Homology CDS 3848312 3849292 . - 0 ID=cds-UUF01538.1;Parent=gene-NDY25_16570;Dbxref=NCBI_GP:UUF01538.1;Name=UUF01538.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_16570;product=IS5 family transposase;protein_id=UUF01538.1;transl_table=11 CP098604.1 Genbank gene 3849554 3850243 . + . ID=gene-NDY25_16575;Name=NDY25_16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16575 CP098604.1 Protein Homology CDS 3849554 3850243 . + 0 ID=cds-UUF01539.1;Parent=gene-NDY25_16575;Dbxref=NCBI_GP:UUF01539.1;Name=UUF01539.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450241.1;locus_tag=NDY25_16575;product=hypothetical protein;protein_id=UUF01539.1;transl_table=11 CP098604.1 Genbank gene 3850348 3850809 . - . ID=gene-NDY25_16580;Name=NDY25_16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16580 CP098604.1 GeneMarkS-2+ CDS 3850348 3850809 . - 0 ID=cds-UUF01540.1;Parent=gene-NDY25_16580;Dbxref=NCBI_GP:UUF01540.1;Name=UUF01540.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16580;product=hypothetical protein;protein_id=UUF01540.1;transl_table=11 CP098604.1 Genbank gene 3850809 3850967 . - . ID=gene-NDY25_16585;Name=NDY25_16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16585 CP098604.1 GeneMarkS-2+ CDS 3850809 3850967 . - 0 ID=cds-UUF01541.1;Parent=gene-NDY25_16585;Dbxref=NCBI_GP:UUF01541.1;Name=UUF01541.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16585;product=hypothetical protein;protein_id=UUF01541.1;transl_table=11 CP098604.1 Genbank gene 3851124 3851573 . - . ID=gene-NDY25_16590;Name=NDY25_16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16590 CP098604.1 Protein Homology CDS 3851124 3851573 . - 0 ID=cds-UUF01542.1;Parent=gene-NDY25_16590;Dbxref=NCBI_GP:UUF01542.1;Name=UUF01542.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF039808.1;locus_tag=NDY25_16590;product=DUF6527 family protein;protein_id=UUF01542.1;transl_table=11 CP098604.1 Genbank gene 3851570 3852754 . - . ID=gene-NDY25_16595;Name=NDY25_16595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16595 CP098604.1 Protein Homology CDS 3851570 3852754 . - 0 ID=cds-UUF01543.1;Parent=gene-NDY25_16595;Dbxref=NCBI_GP:UUF01543.1;Name=UUF01543.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF004804.0;locus_tag=NDY25_16595;product=ThiF family adenylyltransferase;protein_id=UUF01543.1;transl_table=11 CP098604.1 Genbank gene 3852729 3853481 . - . ID=gene-NDY25_16600;Name=NDY25_16600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16600 CP098604.1 Protein Homology CDS 3852729 3853481 . - 0 ID=cds-UUF01544.1;Parent=gene-NDY25_16600;Dbxref=NCBI_GP:UUF01544.1;Name=UUF01544.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025808.2;locus_tag=NDY25_16600;product=multiubiquitin domain-containing protein;protein_id=UUF01544.1;transl_table=11 CP098604.1 Genbank gene 3853572 3853898 . + . ID=gene-NDY25_16605;Name=NDY25_16605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16605 CP098604.1 Protein Homology CDS 3853572 3853898 . + 0 ID=cds-UUF01545.1;Parent=gene-NDY25_16605;Dbxref=NCBI_GP:UUF01545.1;Name=UUF01545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007804352.1;locus_tag=NDY25_16605;product=helix-turn-helix domain-containing protein;protein_id=UUF01545.1;transl_table=11 CP098604.1 Genbank gene 3853911 3854783 . + . ID=gene-NDY25_16610;Name=NDY25_16610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16610 CP098604.1 Protein Homology CDS 3853911 3854783 . + 0 ID=cds-UUF01546.1;Parent=gene-NDY25_16610;Dbxref=NCBI_GP:UUF01546.1;Name=UUF01546.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017885.2;locus_tag=NDY25_16610;product=ImmA/IrrE family metallo-endopeptidase;protein_id=UUF01546.1;transl_table=11 CP098604.1 Genbank gene 3855077 3856291 . - . ID=gene-NDY25_16615;Name=NDY25_16615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16615 CP098604.1 Protein Homology CDS 3855077 3856291 . - 0 ID=cds-UUF01547.1;Parent=gene-NDY25_16615;Dbxref=NCBI_GP:UUF01547.1;Name=UUF01547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452191.1;locus_tag=NDY25_16615;product=MFS transporter;protein_id=UUF01547.1;transl_table=11 CP098604.1 Genbank gene 3856288 3857481 . - . ID=gene-NDY25_16620;Name=NDY25_16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16620 CP098604.1 Protein Homology CDS 3856288 3857481 . - 0 ID=cds-UUF01548.1;Parent=gene-NDY25_16620;Dbxref=NCBI_GP:UUF01548.1;Name=UUF01548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014645764.1;locus_tag=NDY25_16620;product=beta-lactamase family protein;protein_id=UUF01548.1;transl_table=11 CP098604.1 Genbank gene 3857595 3858515 . + . ID=gene-NDY25_16625;Name=NDY25_16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16625 CP098604.1 Protein Homology CDS 3857595 3858515 . + 0 ID=cds-UUF01549.1;Parent=gene-NDY25_16625;Dbxref=NCBI_GP:UUF01549.1;Name=UUF01549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452192.1;locus_tag=NDY25_16625;product=LysR family transcriptional regulator;protein_id=UUF01549.1;transl_table=11 CP098604.1 Genbank gene 3858614 3859036 . + . ID=gene-NDY25_16630;Name=NDY25_16630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16630 CP098604.1 Protein Homology CDS 3858614 3859036 . + 0 ID=cds-UUF01550.1;Parent=gene-NDY25_16630;Dbxref=NCBI_GP:UUF01550.1;Name=UUF01550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158338.1;locus_tag=NDY25_16630;product=DedA family protein;protein_id=UUF01550.1;transl_table=11 CP098604.1 Genbank gene 3859328 3861574 . - . ID=gene-NDY25_16635;Name=NDY25_16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16635 CP098604.1 Protein Homology CDS 3859328 3861574 . - 0 ID=cds-UUF01551.1;Parent=gene-NDY25_16635;Dbxref=NCBI_GP:UUF01551.1;Name=UUF01551.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448347.1;locus_tag=NDY25_16635;product=methyl-accepting chemotaxis protein;protein_id=UUF01551.1;transl_table=11 CP098604.1 Genbank gene 3862027 3862311 . + . ID=gene-NDY25_16640;Name=NDY25_16640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16640 CP098604.1 Protein Homology CDS 3862027 3862311 . + 0 ID=cds-UUF01552.1;Parent=gene-NDY25_16640;Dbxref=NCBI_GP:UUF01552.1;Name=UUF01552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448348.1;locus_tag=NDY25_16640;product=hypothetical protein;protein_id=UUF01552.1;transl_table=11 CP098604.1 Genbank gene 3862308 3862577 . - . ID=gene-NDY25_16645;Name=NDY25_16645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16645 CP098604.1 GeneMarkS-2+ CDS 3862308 3862577 . - 0 ID=cds-UUF01553.1;Parent=gene-NDY25_16645;Dbxref=NCBI_GP:UUF01553.1;Name=UUF01553.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16645;product=hypothetical protein;protein_id=UUF01553.1;transl_table=11 CP098604.1 Genbank gene 3862741 3863928 . - . ID=gene-NDY25_16650;Name=NDY25_16650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16650 CP098604.1 GeneMarkS-2+ CDS 3862741 3863928 . - 0 ID=cds-UUF01554.1;Parent=gene-NDY25_16650;Dbxref=NCBI_GP:UUF01554.1;Name=UUF01554.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16650;product=hypothetical protein;protein_id=UUF01554.1;transl_table=11 CP098604.1 Genbank gene 3864183 3864578 . + . ID=gene-NDY25_16655;Name=NDY25_16655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16655 CP098604.1 Protein Homology CDS 3864183 3864578 . + 0 ID=cds-UUF01555.1;Parent=gene-NDY25_16655;Dbxref=NCBI_GP:UUF01555.1;Name=UUF01555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038225.1;locus_tag=NDY25_16655;product=MobC family plasmid mobilization relaxosome protein;protein_id=UUF01555.1;transl_table=11 CP098604.1 Genbank gene 3864667 3865059 . + . ID=gene-NDY25_16660;Name=NDY25_16660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16660 CP098604.1 Protein Homology CDS 3864667 3865059 . + 0 ID=cds-UUF01556.1;Parent=gene-NDY25_16660;Dbxref=NCBI_GP:UUF01556.1;Name=UUF01556.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154750.1;locus_tag=NDY25_16660;product=H-NS histone family protein;protein_id=UUF01556.1;transl_table=11 CP098604.1 Genbank gene 3865416 3867548 . - . ID=gene-NDY25_16665;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=NDY25_16665 CP098604.1 Protein Homology CDS 3865416 3867548 . - 0 ID=cds-UUF01557.1;Parent=gene-NDY25_16665;Dbxref=NCBI_GP:UUF01557.1;Name=UUF01557.1;Ontology_term=GO:0005980,GO:0004133;gbkey=CDS;gene=glgX;go_function=glycogen debranching enzyme activity|0004133||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172327.1;locus_tag=NDY25_16665;product=glycogen debranching protein GlgX;protein_id=UUF01557.1;transl_table=11 CP098604.1 Genbank gene 3868044 3868964 . + . ID=gene-NDY25_16670;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=NDY25_16670 CP098604.1 Protein Homology CDS 3868044 3868964 . + 0 ID=cds-UUF01558.1;Parent=gene-NDY25_16670;Dbxref=NCBI_GP:UUF01558.1;Name=UUF01558.1;Ontology_term=GO:0006464,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504335.1;locus_tag=NDY25_16670;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=UUF01558.1;transl_table=11 CP098604.1 Genbank gene 3869308 3869985 . + . ID=gene-NDY25_16675;Name=NDY25_16675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16675 CP098604.1 Protein Homology CDS 3869308 3869985 . + 0 ID=cds-UUF01559.1;Parent=gene-NDY25_16675;Dbxref=NCBI_GP:UUF01559.1;Name=UUF01559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169438.1;locus_tag=NDY25_16675;product=response regulator transcription factor;protein_id=UUF01559.1;transl_table=11 CP098604.1 Genbank gene 3869978 3871312 . + . ID=gene-NDY25_16680;Name=NDY25_16680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16680 CP098604.1 Protein Homology CDS 3869978 3871312 . + 0 ID=cds-UUF01560.1;Parent=gene-NDY25_16680;Dbxref=NCBI_GP:UUF01560.1;Name=UUF01560.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237347.1;locus_tag=NDY25_16680;product=HAMP domain-containing histidine kinase;protein_id=UUF01560.1;transl_table=11 CP098604.1 Genbank gene 3871461 3871952 . - . ID=gene-NDY25_16685;Name=NDY25_16685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16685 CP098604.1 Protein Homology CDS 3871461 3871952 . - 0 ID=cds-UUF01561.1;Parent=gene-NDY25_16685;Dbxref=NCBI_GP:UUF01561.1;Name=UUF01561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038220.1;locus_tag=NDY25_16685;product=GNAT family N-acetyltransferase;protein_id=UUF01561.1;transl_table=11 CP098604.1 Genbank gene 3871949 3872239 . - . ID=gene-NDY25_16690;Name=NDY25_16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16690 CP098604.1 Protein Homology CDS 3871949 3872239 . - 0 ID=cds-UUF01562.1;Parent=gene-NDY25_16690;Dbxref=NCBI_GP:UUF01562.1;Name=UUF01562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508712.1;locus_tag=NDY25_16690;product=DUF1778 domain-containing protein;protein_id=UUF01562.1;transl_table=11 CP098604.1 Genbank gene 3872315 3872716 . - . ID=gene-NDY25_16695;Name=NDY25_16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16695 CP098604.1 Protein Homology CDS 3872315 3872716 . - 0 ID=cds-UUF01563.1;Parent=gene-NDY25_16695;Dbxref=NCBI_GP:UUF01563.1;Name=UUF01563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437599.1;locus_tag=NDY25_16695;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF01563.1;transl_table=11 CP098604.1 Genbank gene 3873248 3873871 . - . ID=gene-NDY25_16700;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=NDY25_16700 CP098604.1 Protein Homology CDS 3873248 3873871 . - 0 ID=cds-UUF01564.1;Parent=gene-NDY25_16700;Dbxref=NCBI_GP:UUF01564.1;Name=UUF01564.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508710.1;locus_tag=NDY25_16700;product=dephospho-CoA kinase;protein_id=UUF01564.1;transl_table=11 CP098604.1 Genbank gene 3873885 3874748 . - . ID=gene-NDY25_16705;Name=NDY25_16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16705 CP098604.1 Protein Homology CDS 3873885 3874748 . - 0 ID=cds-UUF01565.1;Parent=gene-NDY25_16705;Dbxref=NCBI_GP:UUF01565.1;Name=UUF01565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302544.1;locus_tag=NDY25_16705;product=A24 family peptidase;protein_id=UUF01565.1;transl_table=11 CP098604.1 Genbank gene 3874755 3876014 . - . ID=gene-NDY25_16710;Name=NDY25_16710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16710 CP098604.1 Protein Homology CDS 3874755 3876014 . - 0 ID=cds-UUF01566.1;Parent=gene-NDY25_16710;Dbxref=NCBI_GP:UUF01566.1;Name=UUF01566.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437601.1;locus_tag=NDY25_16710;product=type II secretion system F family protein;protein_id=UUF01566.1;transl_table=11 CP098604.1 Genbank gene 3876365 3876790 . + . ID=gene-NDY25_16715;Name=NDY25_16715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16715 CP098604.1 Protein Homology CDS 3876365 3876790 . + 0 ID=cds-UUF01567.1;Parent=gene-NDY25_16715;Dbxref=NCBI_GP:UUF01567.1;Name=UUF01567.1;Ontology_term=GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363792.1;locus_tag=NDY25_16715;product=pilin;protein_id=UUF01567.1;transl_table=11 CP098604.1 Genbank gene 3877096 3877548 . + . ID=gene-NDY25_16720;Name=NDY25_16720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16720 CP098604.1 GeneMarkS-2+ CDS 3877096 3877548 . + 0 ID=cds-UUF01568.1;Parent=gene-NDY25_16720;Dbxref=NCBI_GP:UUF01568.1;Name=UUF01568.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16720;product=hypothetical protein;protein_id=UUF01568.1;transl_table=11 CP098604.1 Genbank gene 3877539 3878510 . + . ID=gene-NDY25_16725;Name=NDY25_16725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16725 CP098604.1 Protein Homology CDS 3877539 3878510 . + 0 ID=cds-UUF01569.1;Parent=gene-NDY25_16725;Dbxref=NCBI_GP:UUF01569.1;Name=UUF01569.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013080.2;locus_tag=NDY25_16725;product=phosphoethanolamine transferase;protein_id=UUF01569.1;transl_table=11 CP098604.1 Genbank gene 3878562 3879149 . + . ID=gene-NDY25_16730;Name=NDY25_16730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16730 CP098604.1 GeneMarkS-2+ CDS 3878562 3879149 . + 0 ID=cds-UUF01570.1;Parent=gene-NDY25_16730;Dbxref=NCBI_GP:UUF01570.1;Name=UUF01570.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16730;product=hypothetical protein;protein_id=UUF01570.1;transl_table=11 CP098604.1 Genbank gene 3879146 3879607 . + . ID=gene-NDY25_16735;Name=NDY25_16735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16735 CP098604.1 GeneMarkS-2+ CDS 3879146 3879607 . + 0 ID=cds-UUF01571.1;Parent=gene-NDY25_16735;Dbxref=NCBI_GP:UUF01571.1;Name=UUF01571.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16735;product=hypothetical protein;protein_id=UUF01571.1;transl_table=11 CP098604.1 Genbank gene 3879903 3880652 . + . ID=gene-NDY25_16740;Name=NDY25_16740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16740 CP098604.1 Protein Homology CDS 3879903 3880652 . + 0 ID=cds-UUF01572.1;Parent=gene-NDY25_16740;Dbxref=NCBI_GP:UUF01572.1;Name=UUF01572.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013713.2;locus_tag=NDY25_16740;product=hypothetical protein;protein_id=UUF01572.1;transl_table=11 CP098604.1 Genbank gene 3880687 3882423 . + . ID=gene-NDY25_16745;Name=pilB;gbkey=Gene;gene=pilB;gene_biotype=protein_coding;locus_tag=NDY25_16745 CP098604.1 Protein Homology CDS 3880687 3882423 . + 0 ID=cds-UUF04693.1;Parent=gene-NDY25_16745;Dbxref=NCBI_GP:UUF04693.1;Name=UUF04693.1;Ontology_term=GO:0009297,GO:0016887;gbkey=CDS;gene=pilB;go_function=ATP hydrolysis activity|0016887||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437606.1;locus_tag=NDY25_16745;product=type IV-A pilus assembly ATPase PilB;protein_id=UUF04693.1;transl_table=11 CP098604.1 Genbank gene 3882432 3883049 . - . ID=gene-NDY25_16750;Name=NDY25_16750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16750 CP098604.1 Protein Homology CDS 3882432 3883049 . - 0 ID=cds-UUF01573.1;Parent=gene-NDY25_16750;Dbxref=NCBI_GP:UUF01573.1;Name=UUF01573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003477095.1;locus_tag=NDY25_16750;product=Fic family protein;protein_id=UUF01573.1;transl_table=11 CP098604.1 Genbank gene 3883046 3883228 . - . ID=gene-NDY25_16755;Name=NDY25_16755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16755 CP098604.1 Protein Homology CDS 3883046 3883228 . - 0 ID=cds-UUF01574.1;Parent=gene-NDY25_16755;Dbxref=NCBI_GP:UUF01574.1;Name=UUF01574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812262.1;locus_tag=NDY25_16755;product=YhfG family protein;protein_id=UUF01574.1;transl_table=11 CP098604.1 Genbank gene 3883302 3884696 . - . ID=gene-NDY25_16760;Name=NDY25_16760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16760 CP098604.1 Protein Homology CDS 3883302 3884696 . - 0 ID=cds-UUF01575.1;Parent=gene-NDY25_16760;Dbxref=NCBI_GP:UUF01575.1;Name=UUF01575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003094694.1;locus_tag=NDY25_16760;product=sigma-54 dependent transcriptional regulator;protein_id=UUF01575.1;transl_table=11 CP098604.1 Genbank gene 3884842 3886455 . - . ID=gene-NDY25_16765;Name=NDY25_16765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16765 CP098604.1 Protein Homology CDS 3884842 3886455 . - 0 ID=cds-UUF01576.1;Parent=gene-NDY25_16765;Dbxref=NCBI_GP:UUF01576.1;Name=UUF01576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348336.1;locus_tag=NDY25_16765;product=HAMP domain-containing histidine kinase;protein_id=UUF01576.1;transl_table=11 CP098604.1 Genbank gene 3886687 3887856 . + . ID=gene-NDY25_16770;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=NDY25_16770 CP098604.1 Protein Homology CDS 3886687 3887856 . + 0 ID=cds-UUF01577.1;Parent=gene-NDY25_16770;Dbxref=NCBI_GP:UUF01577.1;Name=UUF01577.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183942.1;locus_tag=NDY25_16770;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=UUF01577.1;transl_table=11 CP098604.1 Genbank gene 3887881 3888756 . + . ID=gene-NDY25_16775;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=NDY25_16775 CP098604.1 Protein Homology CDS 3887881 3888756 . + 0 ID=cds-UUF01578.1;Parent=gene-NDY25_16775;Dbxref=NCBI_GP:UUF01578.1;Name=UUF01578.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812253.1;locus_tag=NDY25_16775;product=succinate--CoA ligase subunit alpha;protein_id=UUF01578.1;transl_table=11 CP098604.1 Genbank gene 3888939 3889745 . - . ID=gene-NDY25_16780;Name=NDY25_16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16780 CP098604.1 Protein Homology CDS 3888939 3889745 . - 0 ID=cds-UUF01579.1;Parent=gene-NDY25_16780;Dbxref=NCBI_GP:UUF01579.1;Name=UUF01579.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015431.2;locus_tag=NDY25_16780;product=LysR substrate-binding domain-containing protein;protein_id=UUF01579.1;transl_table=11 CP098604.1 Genbank gene 3889962 3890138 . + . ID=gene-NDY25_16785;Name=NDY25_16785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16785 CP098604.1 GeneMarkS-2+ CDS 3889962 3890138 . + 0 ID=cds-UUF01580.1;Parent=gene-NDY25_16785;Dbxref=NCBI_GP:UUF01580.1;Name=UUF01580.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16785;product=hypothetical protein;protein_id=UUF01580.1;transl_table=11 CP098604.1 Genbank gene 3890202 3890606 . + . ID=gene-NDY25_16790;Name=NDY25_16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16790 CP098604.1 GeneMarkS-2+ CDS 3890202 3890606 . + 0 ID=cds-UUF01581.1;Parent=gene-NDY25_16790;Dbxref=NCBI_GP:UUF01581.1;Name=UUF01581.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16790;product=hypothetical protein;protein_id=UUF01581.1;transl_table=11 CP098604.1 Genbank gene 3891028 3891849 . + . ID=gene-NDY25_16795;Name=NDY25_16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16795 CP098604.1 Protein Homology CDS 3891028 3891849 . + 0 ID=cds-UUF01582.1;Parent=gene-NDY25_16795;Dbxref=NCBI_GP:UUF01582.1;Name=UUF01582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451883.1;locus_tag=NDY25_16795;product=MBL fold metallo-hydrolase;protein_id=UUF01582.1;transl_table=11 CP098604.1 Genbank gene 3891854 3892249 . + . ID=gene-NDY25_16800;Name=NDY25_16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16800 CP098604.1 Protein Homology CDS 3891854 3892249 . + 0 ID=cds-UUF01583.1;Parent=gene-NDY25_16800;Dbxref=NCBI_GP:UUF01583.1;Name=UUF01583.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024092.2;locus_tag=NDY25_16800;product=nuclear transport factor 2 family protein;protein_id=UUF01583.1;transl_table=11 CP098604.1 Genbank gene 3892742 3894382 . + . ID=gene-NDY25_16805;Name=NDY25_16805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16805 CP098604.1 Protein Homology CDS 3892742 3894382 . + 0 ID=cds-UUF01584.1;Parent=gene-NDY25_16805;Dbxref=NCBI_GP:UUF01584.1;Name=UUF01584.1;Ontology_term=GO:0009435,GO:0003952,GO:0005524;gbkey=CDS;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,ATP binding|0005524||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915802.1;locus_tag=NDY25_16805;product=NAD+ synthase;protein_id=UUF01584.1;transl_table=11 CP098604.1 Genbank gene 3894376 3895353 . - . ID=gene-NDY25_16810;Name=NDY25_16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16810 CP098604.1 Protein Homology CDS 3894376 3895353 . - 0 ID=cds-UUF01585.1;Parent=gene-NDY25_16810;Dbxref=NCBI_GP:UUF01585.1;Name=UUF01585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992839.1;locus_tag=NDY25_16810;product=hypothetical protein;protein_id=UUF01585.1;transl_table=11 CP098604.1 Genbank gene 3895699 3896580 . - . ID=gene-NDY25_16815;Name=NDY25_16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16815 CP098604.1 Protein Homology CDS 3895699 3896580 . - 0 ID=cds-UUF01586.1;Parent=gene-NDY25_16815;Dbxref=NCBI_GP:UUF01586.1;Name=UUF01586.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155156.1;locus_tag=NDY25_16815;product=outer membrane protein assembly factor BamD;protein_id=UUF01586.1;transl_table=11 CP098604.1 Genbank gene 3896700 3897695 . + . ID=gene-NDY25_16820;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=NDY25_16820 CP098604.1 Protein Homology CDS 3896700 3897695 . + 0 ID=cds-UUF01587.1;Parent=gene-NDY25_16820;Dbxref=NCBI_GP:UUF01587.1;Name=UUF01587.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992848.1;locus_tag=NDY25_16820;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=UUF01587.1;transl_table=11 CP098604.1 Genbank gene 3897697 3898512 . + . ID=gene-NDY25_16825;Name=pgeF;gbkey=Gene;gene=pgeF;gene_biotype=protein_coding;locus_tag=NDY25_16825 CP098604.1 Protein Homology CDS 3897697 3898512 . + 0 ID=cds-UUF01588.1;Parent=gene-NDY25_16825;Dbxref=NCBI_GP:UUF01588.1;Name=UUF01588.1;gbkey=CDS;gene=pgeF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155158.1;locus_tag=NDY25_16825;product=peptidoglycan editing factor PgeF;protein_id=UUF01588.1;transl_table=11 CP098604.1 Genbank gene 3898515 3899039 . + . ID=gene-NDY25_16830;Name=NDY25_16830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16830 CP098604.1 Protein Homology CDS 3898515 3899039 . + 0 ID=cds-UUF01589.1;Parent=gene-NDY25_16830;Dbxref=NCBI_GP:UUF01589.1;Name=UUF01589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577794.1;locus_tag=NDY25_16830;product=DUF4166 domain-containing protein;protein_id=UUF01589.1;transl_table=11 CP098604.1 Genbank gene 3899155 3899580 . + . ID=gene-NDY25_16835;Name=NDY25_16835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16835 CP098604.1 Protein Homology CDS 3899155 3899580 . + 0 ID=cds-UUF01590.1;Parent=gene-NDY25_16835;Dbxref=NCBI_GP:UUF01590.1;Name=UUF01590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504305.1;locus_tag=NDY25_16835;product=thiol-disulfide oxidoreductase DCC family protein;protein_id=UUF01590.1;transl_table=11 CP098604.1 Genbank gene 3899842 3901710 . - . ID=gene-NDY25_16840;Name=NDY25_16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16840 CP098604.1 Protein Homology CDS 3899842 3901710 . - 0 ID=cds-UUF01591.1;Parent=gene-NDY25_16840;Dbxref=NCBI_GP:UUF01591.1;Name=UUF01591.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038199.1;locus_tag=NDY25_16840;product=methyl-accepting chemotaxis protein;protein_id=UUF01591.1;transl_table=11 CP098604.1 Genbank gene 3902144 3904582 . - . ID=gene-NDY25_16845;Name=NDY25_16845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16845 CP098604.1 Protein Homology CDS 3902144 3904582 . - 0 ID=cds-UUF04694.1;Parent=gene-NDY25_16845;Dbxref=NCBI_GP:UUF04694.1;Name=UUF04694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171800.1;locus_tag=NDY25_16845;product=glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase;protein_id=UUF04694.1;transl_table=11 CP098604.1 Genbank gene 3905191 3906558 . - . ID=gene-NDY25_16850;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;locus_tag=NDY25_16850 CP098604.1 Protein Homology CDS 3905191 3906558 . - 0 ID=cds-UUF01592.1;Parent=gene-NDY25_16850;Dbxref=NCBI_GP:UUF01592.1;Name=UUF01592.1;Ontology_term=GO:0003825;gbkey=CDS;gene=otsA;go_function=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity|0003825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156978.1;locus_tag=NDY25_16850;product=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming);protein_id=UUF01592.1;transl_table=11 CP098604.1 Genbank gene 3906555 3908333 . - . ID=gene-NDY25_16855;Name=NDY25_16855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16855 CP098604.1 Protein Homology CDS 3906555 3908333 . - 0 ID=cds-UUF01593.1;Parent=gene-NDY25_16855;Dbxref=NCBI_GP:UUF01593.1;Name=UUF01593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901287.1;locus_tag=NDY25_16855;product=glycoside hydrolase family 15 protein;protein_id=UUF01593.1;transl_table=11 CP098604.1 Genbank gene 3908380 3909138 . - . ID=gene-NDY25_16860;Name=otsB;gbkey=Gene;gene=otsB;gene_biotype=protein_coding;locus_tag=NDY25_16860 CP098604.1 Protein Homology CDS 3908380 3909138 . - 0 ID=cds-UUF01594.1;Parent=gene-NDY25_16860;Dbxref=NCBI_GP:UUF01594.1;Name=UUF01594.1;Ontology_term=GO:0005992,GO:0004805;gbkey=CDS;gene=otsB;go_function=trehalose-phosphatase activity|0004805||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038195.1;locus_tag=NDY25_16860;product=trehalose-phosphatase;protein_id=UUF01594.1;transl_table=11 CP098604.1 Genbank pseudogene 3909373 3911806 . - . ID=gene-NDY25_16865;Name=NDY25_16865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16865;pseudo=true CP098604.1 Protein Homology CDS 3909373 3911806 . - 0 ID=cds-NDY25_16865;Parent=gene-NDY25_16865;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158509.1;locus_tag=NDY25_16865;product=TonB-dependent receptor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3912035 3912508 . + . ID=gene-NDY25_16870;Name=NDY25_16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16870 CP098604.1 Protein Homology CDS 3912035 3912508 . + 0 ID=cds-UUF01595.1;Parent=gene-NDY25_16870;Dbxref=NCBI_GP:UUF01595.1;Name=UUF01595.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156981.1;locus_tag=NDY25_16870;product=DUF3574 domain-containing protein;protein_id=UUF01595.1;transl_table=11 CP098604.1 Genbank gene 3912544 3913404 . + . ID=gene-NDY25_16875;Name=NDY25_16875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16875 CP098604.1 Protein Homology CDS 3912544 3913404 . + 0 ID=cds-UUF04695.1;Parent=gene-NDY25_16875;Dbxref=NCBI_GP:UUF04695.1;Name=UUF04695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165919.1;locus_tag=NDY25_16875;product=hypothetical protein;protein_id=UUF04695.1;transl_table=11 CP098604.1 Genbank gene 3913552 3915153 . + . ID=gene-NDY25_16880;Name=NDY25_16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16880 CP098604.1 Protein Homology CDS 3913552 3915153 . + 0 ID=cds-UUF01596.1;Parent=gene-NDY25_16880;Dbxref=NCBI_GP:UUF01596.1;Name=UUF01596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156983.1;locus_tag=NDY25_16880;product=hypothetical protein;protein_id=UUF01596.1;transl_table=11 CP098604.1 Genbank gene 3915150 3916319 . + . ID=gene-NDY25_16885;Name=NDY25_16885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16885 CP098604.1 Protein Homology CDS 3915150 3916319 . + 0 ID=cds-UUF01597.1;Parent=gene-NDY25_16885;Dbxref=NCBI_GP:UUF01597.1;Name=UUF01597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448803.1;locus_tag=NDY25_16885;product=lysozyme inhibitor LprI family protein;protein_id=UUF01597.1;transl_table=11 CP098604.1 Genbank gene 3916717 3917532 . + . ID=gene-NDY25_16890;Name=NDY25_16890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16890 CP098604.1 Protein Homology CDS 3916717 3917532 . + 0 ID=cds-UUF01598.1;Parent=gene-NDY25_16890;Dbxref=NCBI_GP:UUF01598.1;Name=UUF01598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172113.1;locus_tag=NDY25_16890;product=DUF3014 domain-containing protein;protein_id=UUF01598.1;transl_table=11 CP098604.1 Genbank gene 3917678 3918385 . - . ID=gene-NDY25_16895;Name=NDY25_16895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16895 CP098604.1 Protein Homology CDS 3917678 3918385 . - 0 ID=cds-UUF01599.1;Parent=gene-NDY25_16895;Dbxref=NCBI_GP:UUF01599.1;Name=UUF01599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812100.1;locus_tag=NDY25_16895;product=glutathione S-transferase;protein_id=UUF01599.1;transl_table=11 CP098604.1 Genbank gene 3918431 3918739 . - . ID=gene-NDY25_16900;Name=NDY25_16900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16900 CP098604.1 Protein Homology CDS 3918431 3918739 . - 0 ID=cds-UUF01600.1;Parent=gene-NDY25_16900;Dbxref=NCBI_GP:UUF01600.1;Name=UUF01600.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038187.1;locus_tag=NDY25_16900;product=GIY-YIG nuclease family protein;protein_id=UUF01600.1;transl_table=11 CP098604.1 Genbank gene 3919109 3921268 . + . ID=gene-NDY25_16905;Name=NDY25_16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16905 CP098604.1 Protein Homology CDS 3919109 3921268 . + 0 ID=cds-UUF04696.1;Parent=gene-NDY25_16905;Dbxref=NCBI_GP:UUF04696.1;Name=UUF04696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915762.1;locus_tag=NDY25_16905;product=TonB-dependent receptor;protein_id=UUF04696.1;transl_table=11 CP098604.1 Genbank gene 3921333 3922661 . + . ID=gene-NDY25_16910;Name=NDY25_16910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16910 CP098604.1 Protein Homology CDS 3921333 3922661 . + 0 ID=cds-UUF01601.1;Parent=gene-NDY25_16910;Dbxref=NCBI_GP:UUF01601.1;Name=UUF01601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901309.1;locus_tag=NDY25_16910;product=LLM class flavin-dependent oxidoreductase;protein_id=UUF01601.1;transl_table=11 CP098604.1 Genbank gene 3922678 3923718 . + . ID=gene-NDY25_16915;Name=mgrA;gbkey=Gene;gene=mgrA;gene_biotype=protein_coding;locus_tag=NDY25_16915 CP098604.1 Protein Homology CDS 3922678 3923718 . + 0 ID=cds-UUF01602.1;Parent=gene-NDY25_16915;Dbxref=NCBI_GP:UUF01602.1;Name=UUF01602.1;Ontology_term=GO:0047834;gbkey=CDS;gene=mgrA;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488911.1;locus_tag=NDY25_16915;product=L-glyceraldehyde 3-phosphate reductase;protein_id=UUF01602.1;transl_table=11 CP098604.1 Genbank gene 3923730 3924713 . + . ID=gene-NDY25_16920;Name=NDY25_16920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16920 CP098604.1 Protein Homology CDS 3923730 3924713 . + 0 ID=cds-UUF01603.1;Parent=gene-NDY25_16920;Dbxref=NCBI_GP:UUF01603.1;Name=UUF01603.1;Ontology_term=GO:0042626,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901311.1;locus_tag=NDY25_16920;product=aliphatic sulfonate ABC transporter substrate-binding protein;protein_id=UUF01603.1;transl_table=11 CP098604.1 Genbank gene 3924821 3925615 . + . ID=gene-NDY25_16925;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=NDY25_16925 CP098604.1 Protein Homology CDS 3924821 3925615 . + 0 ID=cds-UUF01604.1;Parent=gene-NDY25_16925;Dbxref=NCBI_GP:UUF01604.1;Name=UUF01604.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=ssuC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117872.1;locus_tag=NDY25_16925;product=aliphatic sulfonate ABC transporter permease SsuC;protein_id=UUF01604.1;transl_table=11 CP098604.1 Genbank gene 3925612 3926448 . + . ID=gene-NDY25_16930;Name=NDY25_16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16930 CP098604.1 Protein Homology CDS 3925612 3926448 . + 0 ID=cds-UUF01605.1;Parent=gene-NDY25_16930;Dbxref=NCBI_GP:UUF01605.1;Name=UUF01605.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488905.1;locus_tag=NDY25_16930;product=ATP-binding cassette domain-containing protein;protein_id=UUF01605.1;transl_table=11 CP098604.1 Genbank gene 3926672 3929257 . + . ID=gene-NDY25_16935;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=NDY25_16935 CP098604.1 Protein Homology CDS 3926672 3929257 . + 0 ID=cds-UUF01606.1;Parent=gene-NDY25_16935;Dbxref=NCBI_GP:UUF01606.1;Name=UUF01606.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363370.1;locus_tag=NDY25_16935;product=ATP-dependent chaperone ClpB;protein_id=UUF01606.1;transl_table=11 CP098604.1 Genbank gene 3929471 3930757 . + . ID=gene-NDY25_16940;Name=NDY25_16940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16940 CP098604.1 Protein Homology CDS 3929471 3930757 . + 0 ID=cds-UUF01607.1;Parent=gene-NDY25_16940;Dbxref=NCBI_GP:UUF01607.1;Name=UUF01607.1;Ontology_term=GO:0009058,GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038183.1;locus_tag=NDY25_16940;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=UUF01607.1;transl_table=11 CP098604.1 cmsearch riboswitch 3931620 3931843 . + . ID=id-CP098604.1:3931620..3931843;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 3931959 3933836 . + . ID=gene-NDY25_16945;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=NDY25_16945 CP098604.1 Protein Homology CDS 3931959 3933836 . + 0 ID=cds-UUF01608.1;Parent=gene-NDY25_16945;Dbxref=NCBI_GP:UUF01608.1;Name=UUF01608.1;Ontology_term=GO:0015889,GO:0015420,GO:0019867;gbkey=CDS;gene=btuB;go_component=outer membrane|0019867||IEA;go_function=ABC-type vitamin B12 transporter activity|0015420||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117952.1;locus_tag=NDY25_16945;product=TonB-dependent vitamin B12 receptor;protein_id=UUF01608.1;transl_table=11 CP098604.1 Genbank gene 3933867 3934034 . + . ID=gene-NDY25_16950;Name=NDY25_16950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16950 CP098604.1 GeneMarkS-2+ CDS 3933867 3934034 . + 0 ID=cds-UUF04760.1;Parent=gene-NDY25_16950;Dbxref=NCBI_GP:UUF04760.1;Name=UUF04760.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16950;product=hypothetical protein;protein_id=UUF04760.1;transl_table=11 CP098604.1 Genbank pseudogene 3934030 3934441 . + . ID=gene-NDY25_16955;Name=NDY25_16955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16955;pseudo=true CP098604.1 Protein Homology CDS 3934030 3934441 . + 0 ID=cds-NDY25_16955;Parent=gene-NDY25_16955;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0009236,GO:0000166,GO:0043752;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,adenosylcobinamide kinase activity|0043752||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488884.1;locus_tag=NDY25_16955;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3934438 3935484 . + . ID=gene-NDY25_16960;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=NDY25_16960 CP098604.1 Protein Homology CDS 3934438 3935484 . + 0 ID=cds-UUF01609.1;Parent=gene-NDY25_16960;Dbxref=NCBI_GP:UUF01609.1;Name=UUF01609.1;Ontology_term=GO:0009236,GO:0008939;gbkey=CDS;gene=cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|0008939||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452414.1;locus_tag=NDY25_16960;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=UUF01609.1;transl_table=11 CP098604.1 Genbank pseudogene 3935481 3935675 . + . ID=gene-NDY25_16965;Name=NDY25_16965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16965;pseudo=true CP098604.1 Protein Homology CDS 3935481 3935675 . + 0 ID=cds-NDY25_16965;Parent=gene-NDY25_16965;Note=internal stop%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924543.1;locus_tag=NDY25_16965;product=histidine phosphatase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3935786 3936676 . + . ID=gene-NDY25_16970;Name=NDY25_16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16970 CP098604.1 Protein Homology CDS 3935786 3936676 . + 0 ID=cds-UUF01610.1;Parent=gene-NDY25_16970;Dbxref=NCBI_GP:UUF01610.1;Name=UUF01610.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348303.1;locus_tag=NDY25_16970;product=GyrI-like domain-containing protein;protein_id=UUF01610.1;transl_table=11 CP098604.1 Genbank gene 3936887 3938329 . - . ID=gene-NDY25_16975;Name=NDY25_16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16975 CP098604.1 Protein Homology CDS 3936887 3938329 . - 0 ID=cds-UUF01611.1;Parent=gene-NDY25_16975;Dbxref=NCBI_GP:UUF01611.1;Name=UUF01611.1;Ontology_term=GO:0030245,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=cellulose catabolic process|0030245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508753.1;locus_tag=NDY25_16975;product=glycoside hydrolase family 6 protein;protein_id=UUF01611.1;transl_table=11 CP098604.1 Genbank gene 3938610 3939365 . - . ID=gene-NDY25_16980;Name=NDY25_16980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16980 CP098604.1 GeneMarkS-2+ CDS 3938610 3939365 . - 0 ID=cds-UUF01612.1;Parent=gene-NDY25_16980;Dbxref=NCBI_GP:UUF01612.1;Name=UUF01612.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_16980;product=hypothetical protein;protein_id=UUF01612.1;transl_table=11 CP098604.1 Genbank pseudogene 3939946 3940513 . + . ID=gene-NDY25_16985;Name=NDY25_16985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_16985;pseudo=true CP098604.1 Protein Homology CDS 3939946 3940513 . + 0 ID=cds-NDY25_16985;Parent=gene-NDY25_16985;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002802850.1;locus_tag=NDY25_16985;product=IS5 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3940574 3941794 . - . ID=gene-NDY25_16990;Name=NDY25_16990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16990 CP098604.1 Protein Homology CDS 3940574 3941794 . - 0 ID=cds-UUF01613.1;Parent=gene-NDY25_16990;Dbxref=NCBI_GP:UUF01613.1;Name=UUF01613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807763.1;locus_tag=NDY25_16990;product=type III PLP-dependent enzyme;protein_id=UUF01613.1;transl_table=11 CP098604.1 Genbank gene 3941791 3943560 . - . ID=gene-NDY25_16995;Name=NDY25_16995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_16995 CP098604.1 Protein Homology CDS 3941791 3943560 . - 0 ID=cds-UUF01614.1;Parent=gene-NDY25_16995;Dbxref=NCBI_GP:UUF01614.1;Name=UUF01614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850679.1;locus_tag=NDY25_16995;product=iron transporter;protein_id=UUF01614.1;transl_table=11 CP098604.1 Genbank gene 3943538 3944746 . - . ID=gene-NDY25_17000;Name=NDY25_17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17000 CP098604.1 Protein Homology CDS 3943538 3944746 . - 0 ID=cds-UUF01615.1;Parent=gene-NDY25_17000;Dbxref=NCBI_GP:UUF01615.1;Name=UUF01615.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160094.1;locus_tag=NDY25_17000;product=MFS transporter;protein_id=UUF01615.1;transl_table=11 CP098604.1 Genbank gene 3944743 3946545 . - . ID=gene-NDY25_17005;Name=NDY25_17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17005 CP098604.1 Protein Homology CDS 3944743 3946545 . - 0 ID=cds-UUF01616.1;Parent=gene-NDY25_17005;Dbxref=NCBI_GP:UUF01616.1;Name=UUF01616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010366987.1;locus_tag=NDY25_17005;product=IucA/IucC family siderophore biosynthesis protein;protein_id=UUF01616.1;transl_table=11 CP098604.1 Genbank gene 3946542 3947768 . - . ID=gene-NDY25_17010;Name=NDY25_17010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17010 CP098604.1 Protein Homology CDS 3946542 3947768 . - 0 ID=cds-UUF01617.1;Parent=gene-NDY25_17010;Dbxref=NCBI_GP:UUF01617.1;Name=UUF01617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452407.1;locus_tag=NDY25_17010;product=siderophore biosynthesis protein PvsA;protein_id=UUF01617.1;transl_table=11 CP098604.1 Genbank gene 3948021 3950153 . - . ID=gene-NDY25_17015;Name=NDY25_17015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17015 CP098604.1 Protein Homology CDS 3948021 3950153 . - 0 ID=cds-UUF01618.1;Parent=gene-NDY25_17015;Dbxref=NCBI_GP:UUF01618.1;Name=UUF01618.1;Ontology_term=GO:0015891,GO:0015343,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=siderophore transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488864.1;locus_tag=NDY25_17015;product=TonB-dependent siderophore receptor;protein_id=UUF01618.1;transl_table=11 CP098604.1 Genbank gene 3950154 3950915 . - . ID=gene-NDY25_17020;Name=NDY25_17020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17020 CP098604.1 Protein Homology CDS 3950154 3950915 . - 0 ID=cds-UUF01619.1;Parent=gene-NDY25_17020;Dbxref=NCBI_GP:UUF01619.1;Name=UUF01619.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913611.1;locus_tag=NDY25_17020;product=aldolase/citrate lyase family protein;protein_id=UUF01619.1;transl_table=11 CP098604.1 Genbank gene 3951133 3952830 . - . ID=gene-NDY25_17025;Name=NDY25_17025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17025 CP098604.1 Protein Homology CDS 3951133 3952830 . - 0 ID=cds-UUF01620.1;Parent=gene-NDY25_17025;Dbxref=NCBI_GP:UUF01620.1;Name=UUF01620.1;Ontology_term=GO:0006813,GO:0008324,GO:0015299,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=cation transmembrane transporter activity|0008324||IEA,solute:proton antiporter activity|0015299||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452404.1;locus_tag=NDY25_17025;product=Kef family K(+) transporter;protein_id=UUF01620.1;transl_table=11 CP098604.1 Genbank gene 3953319 3954512 . + . ID=gene-NDY25_17030;Name=NDY25_17030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17030 CP098604.1 Protein Homology CDS 3953319 3954512 . + 0 ID=cds-UUF01621.1;Parent=gene-NDY25_17030;Dbxref=NCBI_GP:UUF01621.1;Name=UUF01621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972544.1;locus_tag=NDY25_17030;product=cytochrome P450;protein_id=UUF01621.1;transl_table=11 CP098604.1 Genbank gene 3955328 3957727 . - . ID=gene-NDY25_17035;Name=NDY25_17035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17035 CP098604.1 Protein Homology CDS 3955328 3957727 . - 0 ID=cds-UUF01622.1;Parent=gene-NDY25_17035;Dbxref=NCBI_GP:UUF01622.1;Name=UUF01622.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090820.1;locus_tag=NDY25_17035;product=TonB-dependent receptor;protein_id=UUF01622.1;transl_table=11 CP098604.1 Genbank gene 3958067 3960454 . - . ID=gene-NDY25_17040;Name=NDY25_17040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17040 CP098604.1 Protein Homology CDS 3958067 3960454 . - 0 ID=cds-UUF01623.1;Parent=gene-NDY25_17040;Dbxref=NCBI_GP:UUF01623.1;Name=UUF01623.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921435.1;locus_tag=NDY25_17040;product=TonB-dependent receptor;protein_id=UUF01623.1;transl_table=11 CP098604.1 Genbank gene 3960969 3963368 . - . ID=gene-NDY25_17045;Name=NDY25_17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17045 CP098604.1 Protein Homology CDS 3960969 3963368 . - 0 ID=cds-UUF01624.1;Parent=gene-NDY25_17045;Dbxref=NCBI_GP:UUF01624.1;Name=UUF01624.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156670.1;locus_tag=NDY25_17045;product=TonB-dependent receptor;protein_id=UUF01624.1;transl_table=11 CP098604.1 Genbank gene 3963554 3965413 . + . ID=gene-NDY25_17050;Name=NDY25_17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17050 CP098604.1 Protein Homology CDS 3963554 3965413 . + 0 ID=cds-UUF01625.1;Parent=gene-NDY25_17050;Dbxref=NCBI_GP:UUF01625.1;Name=UUF01625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924596.1;locus_tag=NDY25_17050;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=UUF01625.1;transl_table=11 CP098604.1 Genbank gene 3965552 3966314 . - . ID=gene-NDY25_17055;Name=NDY25_17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17055 CP098604.1 Protein Homology CDS 3965995 3966314 . - 0 ID=cds-UUF04697.1;Parent=gene-NDY25_17055;Dbxref=NCBI_GP:UUF04697.1;Name=UUF04697.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_17055;product=IS5 family transposase;protein_id=UUF04697.1;transl_table=11 CP098604.1 Protein Homology CDS 3965552 3965996 . - 1 ID=cds-UUF04697.1;Parent=gene-NDY25_17055;Dbxref=NCBI_GP:UUF04697.1;Name=UUF04697.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_17055;product=IS5 family transposase;protein_id=UUF04697.1;transl_table=11 CP098604.1 Genbank gene 3966501 3967645 . + . ID=gene-NDY25_17060;Name=NDY25_17060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17060 CP098604.1 Protein Homology CDS 3966501 3966741 . + 0 ID=cds-UUF01626.1;Parent=gene-NDY25_17060;Dbxref=NCBI_GP:UUF01626.1;Name=UUF01626.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_17060;product=IS3 family transposase;protein_id=UUF01626.1;transl_table=11 CP098604.1 Protein Homology CDS 3966741 3967645 . + 2 ID=cds-UUF01626.1;Parent=gene-NDY25_17060;Dbxref=NCBI_GP:UUF01626.1;Name=UUF01626.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_17060;product=IS3 family transposase;protein_id=UUF01626.1;transl_table=11 CP098604.1 Genbank gene 3967995 3969239 . - . ID=gene-NDY25_17065;Name=NDY25_17065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17065 CP098604.1 Protein Homology CDS 3967995 3969239 . - 0 ID=cds-UUF01627.1;Parent=gene-NDY25_17065;Dbxref=NCBI_GP:UUF01627.1;Name=UUF01627.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451728.1;locus_tag=NDY25_17065;product=MFS transporter;protein_id=UUF01627.1;transl_table=11 CP098604.1 Genbank gene 3969723 3970025 . + . ID=gene-NDY25_17070;Name=NDY25_17070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17070 CP098604.1 Protein Homology CDS 3969723 3970025 . + 0 ID=cds-UUF01628.1;Parent=gene-NDY25_17070;Dbxref=NCBI_GP:UUF01628.1;Name=UUF01628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451727.1;locus_tag=NDY25_17070;product=zinc ribbon domain-containing protein;protein_id=UUF01628.1;transl_table=11 CP098604.1 Genbank gene 3970121 3970720 . + . ID=gene-NDY25_17075;Name=NDY25_17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17075 CP098604.1 Protein Homology CDS 3970121 3970720 . + 0 ID=cds-UUF01629.1;Parent=gene-NDY25_17075;Dbxref=NCBI_GP:UUF01629.1;Name=UUF01629.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019186137.1;locus_tag=NDY25_17075;product=hypothetical protein;protein_id=UUF01629.1;transl_table=11 CP098604.1 Genbank gene 3970932 3971705 . - . ID=gene-NDY25_17080;Name=NDY25_17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17080 CP098604.1 Protein Homology CDS 3970932 3971705 . - 0 ID=cds-UUF01630.1;Parent=gene-NDY25_17080;Dbxref=NCBI_GP:UUF01630.1;Name=UUF01630.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156660.1;locus_tag=NDY25_17080;product=DUF3011 domain-containing protein;protein_id=UUF01630.1;transl_table=11 CP098604.1 Genbank pseudogene 3971862 3973659 . + . ID=gene-NDY25_17085;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=pseudogene;locus_tag=NDY25_17085;pseudo=true CP098604.1 Protein Homology CDS 3971862 3973659 . + 0 ID=cds-NDY25_17085;Parent=gene-NDY25_17085;Note=frameshifted;Ontology_term=GO:0006418,GO:0000166,GO:0004812,GO:0005524,GO:0016874;gbkey=CDS;gene=aspS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008211013.1;locus_tag=NDY25_17085;product=aspartate--tRNA ligase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3974130 3974657 . + . ID=gene-NDY25_17090;Name=NDY25_17090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17090 CP098604.1 Protein Homology CDS 3974130 3974657 . + 0 ID=cds-UUF01631.1;Parent=gene-NDY25_17090;Dbxref=NCBI_GP:UUF01631.1;Name=UUF01631.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159325.1;locus_tag=NDY25_17090;product=GNAT family N-acetyltransferase;protein_id=UUF01631.1;transl_table=11 CP098604.1 Genbank gene 3974721 3975398 . + . ID=gene-NDY25_17095;Name=NDY25_17095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17095 CP098604.1 Protein Homology CDS 3974721 3975398 . + 0 ID=cds-UUF01632.1;Parent=gene-NDY25_17095;Dbxref=NCBI_GP:UUF01632.1;Name=UUF01632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156657.1;locus_tag=NDY25_17095;product=alpha/beta fold hydrolase;protein_id=UUF01632.1;transl_table=11 CP098604.1 Genbank gene 3975486 3976214 . + . ID=gene-NDY25_17100;Name=NDY25_17100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17100 CP098604.1 Protein Homology CDS 3975486 3976214 . + 0 ID=cds-UUF01633.1;Parent=gene-NDY25_17100;Dbxref=NCBI_GP:UUF01633.1;Name=UUF01633.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052063.1;locus_tag=NDY25_17100;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=UUF01633.1;transl_table=11 CP098604.1 Genbank gene 3976344 3976868 . + . ID=gene-NDY25_17105;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=NDY25_17105 CP098604.1 Protein Homology CDS 3976344 3976868 . + 0 ID=cds-UUF01634.1;Parent=gene-NDY25_17105;Dbxref=NCBI_GP:UUF01634.1;Name=UUF01634.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction endodeoxyribonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156655.1;locus_tag=NDY25_17105;product=crossover junction endodeoxyribonuclease RuvC;protein_id=UUF01634.1;transl_table=11 CP098604.1 Genbank pseudogene 3976987 3977568 . + . ID=gene-NDY25_17110;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=pseudogene;locus_tag=NDY25_17110;pseudo=true CP098604.1 Protein Homology CDS 3976987 3977568 . + 0 ID=cds-NDY25_17110;Parent=gene-NDY25_17110;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0006310,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=four-way junction helicase activity|0009378||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258432.1;locus_tag=NDY25_17110;product=Holliday junction branch migration protein RuvA;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3977628 3979535 . + . ID=gene-NDY25_17115;Name=NDY25_17115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17115 CP098604.1 Protein Homology CDS 3977628 3979535 . + 0 ID=cds-UUF01635.1;Parent=gene-NDY25_17115;Dbxref=NCBI_GP:UUF01635.1;Name=UUF01635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156654.1;locus_tag=NDY25_17115;product=potassium transporter Kup;protein_id=UUF01635.1;transl_table=11 CP098604.1 Genbank gene 3979714 3980751 . + . ID=gene-NDY25_17120;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=NDY25_17120 CP098604.1 Protein Homology CDS 3979714 3980751 . + 0 ID=cds-UUF01636.1;Parent=gene-NDY25_17120;Dbxref=NCBI_GP:UUF01636.1;Name=UUF01636.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452374.1;locus_tag=NDY25_17120;product=Holliday junction branch migration DNA helicase RuvB;protein_id=UUF01636.1;transl_table=11 CP098604.1 Genbank gene 3980741 3981172 . + . ID=gene-NDY25_17125;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=NDY25_17125 CP098604.1 Protein Homology CDS 3980741 3981172 . + 0 ID=cds-UUF01637.1;Parent=gene-NDY25_17125;Dbxref=NCBI_GP:UUF01637.1;Name=UUF01637.1;Ontology_term=GO:0005515,GO:0047617,GO:0005737;gbkey=CDS;gene=ybgC;go_component=cytoplasm|0005737||IEA;go_function=protein binding|0005515||IEA,acyl-CoA hydrolase activity|0047617||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019185222.1;locus_tag=NDY25_17125;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=UUF01637.1;transl_table=11 CP098604.1 Genbank gene 3981184 3981963 . + . ID=gene-NDY25_17130;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=NDY25_17130 CP098604.1 Protein Homology CDS 3981184 3981963 . + 0 ID=cds-UUF01638.1;Parent=gene-NDY25_17130;Dbxref=NCBI_GP:UUF01638.1;Name=UUF01638.1;Ontology_term=GO:1902600,GO:0015078,GO:0005887;gbkey=CDS;gene=tolQ;go_component=integral component of plasma membrane|0005887||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913648.1;locus_tag=NDY25_17130;product=protein TolQ;protein_id=UUF01638.1;transl_table=11 CP098604.1 Genbank gene 3982103 3982552 . + . ID=gene-NDY25_17135;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=NDY25_17135 CP098604.1 Protein Homology CDS 3982103 3982552 . + 0 ID=cds-UUF01639.1;Parent=gene-NDY25_17135;Dbxref=NCBI_GP:UUF01639.1;Name=UUF01639.1;Ontology_term=GO:0061024,GO:1902600,GO:0015078,GO:0031237;gbkey=CDS;gene=tolR;go_component=intrinsic component of periplasmic side of plasma membrane|0031237||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=membrane organization|0061024||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913652.1;locus_tag=NDY25_17135;product=protein TolR;protein_id=UUF01639.1;transl_table=11 CP098604.1 Genbank gene 3982542 3983582 . + . ID=gene-NDY25_17140;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=NDY25_17140 CP098604.1 Protein Homology CDS 3982542 3983582 . + 0 ID=cds-UUF01640.1;Parent=gene-NDY25_17140;Dbxref=NCBI_GP:UUF01640.1;Name=UUF01640.1;Ontology_term=GO:0006810,GO:0005215,GO:0031237;gbkey=CDS;gene=tolA;go_component=intrinsic component of periplasmic side of plasma membrane|0031237||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482566.1;locus_tag=NDY25_17140;product=cell envelope integrity protein TolA;protein_id=UUF01640.1;transl_table=11 CP098604.1 Genbank gene 3983740 3985059 . + . ID=gene-NDY25_17145;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=NDY25_17145 CP098604.1 Protein Homology CDS 3983740 3985059 . + 0 ID=cds-UUF01641.1;Parent=gene-NDY25_17145;Dbxref=NCBI_GP:UUF01641.1;Name=UUF01641.1;Ontology_term=GO:0006810,GO:0005215,GO:0030288;gbkey=CDS;gene=tolB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445349.1;locus_tag=NDY25_17145;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=UUF01641.1;transl_table=11 CP098604.1 Genbank gene 3985116 3985634 . + . ID=gene-NDY25_17150;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=NDY25_17150 CP098604.1 Protein Homology CDS 3985116 3985634 . + 0 ID=cds-UUF01642.1;Parent=gene-NDY25_17150;Dbxref=NCBI_GP:UUF01642.1;Name=UUF01642.1;Ontology_term=GO:0009279;gbkey=CDS;gene=pal;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010344309.1;locus_tag=NDY25_17150;product=peptidoglycan-associated lipoprotein Pal;protein_id=UUF01642.1;transl_table=11 CP098604.1 Genbank pseudogene 3985641 3986463 . + . ID=gene-NDY25_17155;Name=ybgF;gbkey=Gene;gene=ybgF;gene_biotype=pseudogene;locus_tag=NDY25_17155;pseudo=true CP098604.1 Protein Homology CDS 3985641 3986463 . + 0 ID=cds-NDY25_17155;Parent=gene-NDY25_17155;Note=frameshifted;Ontology_term=GO:0005515;gbkey=CDS;gene=ybgF;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304871.1;locus_tag=NDY25_17155;product=tol-pal system protein YbgF;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3986506 3987189 . + . ID=gene-NDY25_17160;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=NDY25_17160 CP098604.1 Protein Homology CDS 3986506 3987189 . + 0 ID=cds-UUF01643.1;Parent=gene-NDY25_17160;Dbxref=NCBI_GP:UUF01643.1;Name=UUF01643.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165275.1;locus_tag=NDY25_17160;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=UUF01643.1;transl_table=11 CP098604.1 Genbank gene 3987237 3988103 . - . ID=gene-NDY25_17165;Name=NDY25_17165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17165 CP098604.1 Protein Homology CDS 3987237 3988103 . - 0 ID=cds-UUF01644.1;Parent=gene-NDY25_17165;Dbxref=NCBI_GP:UUF01644.1;Name=UUF01644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904338.1;locus_tag=NDY25_17165;product=aldo/keto reductase family oxidoreductase;protein_id=UUF01644.1;transl_table=11 CP098604.1 Genbank gene 3988445 3988520 . - . ID=gene-NDY25_17170;Name=NDY25_17170;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_17170 CP098604.1 tRNAscan-SE tRNA 3988445 3988520 . - . ID=rna-NDY25_17170;Parent=gene-NDY25_17170;anticodon=(pos:complement(3988485..3988487));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_17170;product=tRNA-Lys CP098604.1 tRNAscan-SE exon 3988445 3988520 . - . ID=exon-NDY25_17170-1;Parent=rna-NDY25_17170;anticodon=(pos:complement(3988485..3988487));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_17170;product=tRNA-Lys CP098604.1 Genbank gene 3988568 3989242 . - . ID=gene-NDY25_17175;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=NDY25_17175 CP098604.1 Protein Homology CDS 3988568 3989242 . - 0 ID=cds-UUF01645.1;Parent=gene-NDY25_17175;Dbxref=NCBI_GP:UUF01645.1;Name=UUF01645.1;Ontology_term=GO:0008616;gbkey=CDS;gene=queC;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038130.1;locus_tag=NDY25_17175;product=7-cyano-7-deazaguanine synthase QueC;protein_id=UUF01645.1;transl_table=11 CP098604.1 Genbank gene 3989542 3990549 . + . ID=gene-NDY25_17180;Name=NDY25_17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17180 CP098604.1 Protein Homology CDS 3989542 3990549 . + 0 ID=cds-UUF01646.1;Parent=gene-NDY25_17180;Dbxref=NCBI_GP:UUF01646.1;Name=UUF01646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448629.1;locus_tag=NDY25_17180;product=PAS domain-containing protein;protein_id=UUF01646.1;transl_table=11 CP098604.1 Genbank gene 3990546 3990905 . + . ID=gene-NDY25_17185;Name=NDY25_17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17185 CP098604.1 Protein Homology CDS 3990546 3990905 . + 0 ID=cds-UUF01647.1;Parent=gene-NDY25_17185;Dbxref=NCBI_GP:UUF01647.1;Name=UUF01647.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364125.1;locus_tag=NDY25_17185;product=response regulator;protein_id=UUF01647.1;transl_table=11 CP098604.1 Genbank pseudogene 3990968 3991171 . + . ID=gene-NDY25_17190;Name=NDY25_17190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17190;pseudo=true CP098604.1 Protein Homology CDS 3990968 3991171 . + 0 ID=cds-NDY25_17190;Parent=gene-NDY25_17190;Note=incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448624.1;locus_tag=NDY25_17190;product=LysE family transporter;pseudo=true;transl_table=11 CP098604.1 Genbank gene 3991199 3991633 . + . ID=gene-NDY25_17195;Name=NDY25_17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17195 CP098604.1 Protein Homology CDS 3991199 3991633 . + 0 ID=cds-UUF04698.1;Parent=gene-NDY25_17195;Dbxref=NCBI_GP:UUF04698.1;Name=UUF04698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448623.1;locus_tag=NDY25_17195;product=GNAT family N-acetyltransferase;protein_id=UUF04698.1;transl_table=11 CP098604.1 Genbank gene 3991833 3994001 . - . ID=gene-NDY25_17200;Name=NDY25_17200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17200 CP098604.1 Protein Homology CDS 3991833 3994001 . - 0 ID=cds-UUF01648.1;Parent=gene-NDY25_17200;Dbxref=NCBI_GP:UUF01648.1;Name=UUF01648.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924661.1;locus_tag=NDY25_17200;product=methyl-accepting chemotaxis protein;protein_id=UUF01648.1;transl_table=11 CP098604.1 Genbank gene 3994529 3994735 . - . ID=gene-NDY25_17205;Name=NDY25_17205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17205 CP098604.1 Protein Homology CDS 3994529 3994735 . - 0 ID=cds-UUF01649.1;Parent=gene-NDY25_17205;Dbxref=NCBI_GP:UUF01649.1;Name=UUF01649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913665.1;locus_tag=NDY25_17205;product=hypothetical protein;protein_id=UUF01649.1;transl_table=11 CP098604.1 Genbank gene 3994982 3995692 . + . ID=gene-NDY25_17210;Name=NDY25_17210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17210 CP098604.1 Protein Homology CDS 3994982 3995692 . + 0 ID=cds-UUF01650.1;Parent=gene-NDY25_17210;Dbxref=NCBI_GP:UUF01650.1;Name=UUF01650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904347.1;locus_tag=NDY25_17210;product=rRNA pseudouridine synthase;protein_id=UUF01650.1;transl_table=11 CP098604.1 Genbank gene 3996242 3996646 . - . ID=gene-NDY25_17215;Name=NDY25_17215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17215 CP098604.1 Protein Homology CDS 3996242 3996646 . - 0 ID=cds-UUF01651.1;Parent=gene-NDY25_17215;Dbxref=NCBI_GP:UUF01651.1;Name=UUF01651.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090797.1;locus_tag=NDY25_17215;product=response regulator;protein_id=UUF01651.1;transl_table=11 CP098604.1 Genbank gene 3996725 3997207 . - . ID=gene-NDY25_17220;Name=NDY25_17220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17220 CP098604.1 Protein Homology CDS 3996725 3997207 . - 0 ID=cds-UUF01652.1;Parent=gene-NDY25_17220;Dbxref=NCBI_GP:UUF01652.1;Name=UUF01652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155539.1;locus_tag=NDY25_17220;product=hypothetical protein;protein_id=UUF01652.1;transl_table=11 CP098604.1 Genbank gene 3997346 3999148 . - . ID=gene-NDY25_17225;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=NDY25_17225 CP098604.1 Protein Homology CDS 3997346 3999148 . - 0 ID=cds-UUF01653.1;Parent=gene-NDY25_17225;Dbxref=NCBI_GP:UUF01653.1;Name=UUF01653.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155540.1;locus_tag=NDY25_17225;product=DNA helicase RecQ;protein_id=UUF01653.1;transl_table=11 CP098604.1 Genbank gene 3999363 3999920 . - . ID=gene-NDY25_17230;Name=NDY25_17230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17230 CP098604.1 Protein Homology CDS 3999363 3999920 . - 0 ID=cds-UUF01654.1;Parent=gene-NDY25_17230;Dbxref=NCBI_GP:UUF01654.1;Name=UUF01654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010364158.1;locus_tag=NDY25_17230;product=DNA starvation/stationary phase protection protein;protein_id=UUF01654.1;transl_table=11 CP098604.1 Genbank gene 4000011 4004132 . + . ID=gene-NDY25_17235;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=NDY25_17235 CP098604.1 Protein Homology CDS 4000011 4004132 . + 0 ID=cds-UUF01655.1;Parent=gene-NDY25_17235;Dbxref=NCBI_GP:UUF01655.1;Name=UUF01655.1;Ontology_term=GO:0006139,GO:0004386;gbkey=CDS;gene=hrpA;go_function=helicase activity|0004386||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303863.1;locus_tag=NDY25_17235;product=ATP-dependent RNA helicase HrpA;protein_id=UUF01655.1;transl_table=11 CP098604.1 Genbank gene 4004379 4007015 . - . ID=gene-NDY25_17240;Name=NDY25_17240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17240 CP098604.1 Protein Homology CDS 4004379 4007015 . - 0 ID=cds-UUF01656.1;Parent=gene-NDY25_17240;Dbxref=NCBI_GP:UUF01656.1;Name=UUF01656.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988680.1;locus_tag=NDY25_17240;product=TonB-dependent receptor;protein_id=UUF01656.1;transl_table=11 CP098604.1 Genbank gene 4007124 4008158 . - . ID=gene-NDY25_17245;Name=NDY25_17245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17245 CP098604.1 Protein Homology CDS 4007124 4008158 . - 0 ID=cds-UUF01657.1;Parent=gene-NDY25_17245;Dbxref=NCBI_GP:UUF01657.1;Name=UUF01657.1;Ontology_term=GO:0006096,GO:0004340;gbkey=CDS;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052049.1;locus_tag=NDY25_17245;product=glucokinase;protein_id=UUF01657.1;transl_table=11 CP098604.1 Genbank gene 4008436 4008948 . - . ID=gene-NDY25_17250;Name=NDY25_17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17250 CP098604.1 Protein Homology CDS 4008436 4008948 . - 0 ID=cds-UUF01658.1;Parent=gene-NDY25_17250;Dbxref=NCBI_GP:UUF01658.1;Name=UUF01658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482518.1;locus_tag=NDY25_17250;product=hypothetical protein;protein_id=UUF01658.1;transl_table=11 CP098604.1 Genbank gene 4009121 4010245 . - . ID=gene-NDY25_17255;Name=pqqE;gbkey=Gene;gene=pqqE;gene_biotype=protein_coding;locus_tag=NDY25_17255 CP098604.1 Protein Homology CDS 4009121 4010245 . - 0 ID=cds-UUF01659.1;Parent=gene-NDY25_17255;Dbxref=NCBI_GP:UUF01659.1;Name=UUF01659.1;Ontology_term=GO:0018149,GO:0018189;gbkey=CDS;gene=pqqE;go_process=peptide cross-linking|0018149||IEA,pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452763.1;locus_tag=NDY25_17255;product=pyrroloquinoline quinone biosynthesis protein PqqE;protein_id=UUF01659.1;transl_table=11 CP098604.1 Genbank gene 4010242 4010520 . - . ID=gene-NDY25_17260;Name=pqqD;gbkey=Gene;gene=pqqD;gene_biotype=protein_coding;locus_tag=NDY25_17260 CP098604.1 Protein Homology CDS 4010242 4010520 . - 0 ID=cds-UUF01660.1;Parent=gene-NDY25_17260;Dbxref=NCBI_GP:UUF01660.1;Name=UUF01660.1;Ontology_term=GO:0018189,GO:0048038;gbkey=CDS;gene=pqqD;go_function=quinone binding|0048038||IEA;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445334.1;locus_tag=NDY25_17260;product=pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;protein_id=UUF01660.1;transl_table=11 CP098604.1 Genbank gene 4010517 4011269 . - . ID=gene-NDY25_17265;Name=pqqC;gbkey=Gene;gene=pqqC;gene_biotype=protein_coding;locus_tag=NDY25_17265 CP098604.1 Protein Homology CDS 4010517 4011269 . - 0 ID=cds-UUF01661.1;Parent=gene-NDY25_17265;Dbxref=NCBI_GP:UUF01661.1;Name=UUF01661.1;Ontology_term=GO:0018189;gbkey=CDS;gene=pqqC;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437693.1;locus_tag=NDY25_17265;product=pyrroloquinoline-quinone synthase PqqC;protein_id=UUF01661.1;transl_table=11 CP098604.1 Genbank gene 4011266 4012165 . - . ID=gene-NDY25_17270;Name=pqqB;gbkey=Gene;gene=pqqB;gene_biotype=protein_coding;locus_tag=NDY25_17270 CP098604.1 Protein Homology CDS 4011266 4012165 . - 0 ID=cds-UUF01662.1;Parent=gene-NDY25_17270;Dbxref=NCBI_GP:UUF01662.1;Name=UUF01662.1;Ontology_term=GO:0018189;gbkey=CDS;gene=pqqB;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038060.1;locus_tag=NDY25_17270;product=pyrroloquinoline quinone biosynthesis protein PqqB;protein_id=UUF01662.1;transl_table=11 CP098604.1 Genbank gene 4012233 4012313 . - . ID=gene-NDY25_17275;Name=pqqA;gbkey=Gene;gene=pqqA;gene_biotype=protein_coding;locus_tag=NDY25_17275 CP098604.1 Protein Homology CDS 4012233 4012313 . - 0 ID=cds-UUF04699.1;Parent=gene-NDY25_17275;Dbxref=NCBI_GP:UUF04699.1;Name=UUF04699.1;Ontology_term=GO:0018189,GO:0003824;gbkey=CDS;gene=pqqA;go_function=catalytic activity|0003824||IEA;go_process=pyrroloquinoline quinone biosynthetic process|0018189||IEA;inference=COORDINATES: protein motif:HMM:TIGR02107.1;locus_tag=NDY25_17275;product=pyrroloquinoline quinone precursor peptide PqqA;protein_id=UUF04699.1;transl_table=11 CP098604.1 Genbank gene 4012604 4014790 . + . ID=gene-NDY25_17280;Name=NDY25_17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17280 CP098604.1 Protein Homology CDS 4012604 4014790 . + 0 ID=cds-UUF01663.1;Parent=gene-NDY25_17280;Dbxref=NCBI_GP:UUF01663.1;Name=UUF01663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090786.1;locus_tag=NDY25_17280;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=UUF01663.1;transl_table=11 CP098604.1 Genbank gene 4014995 4016509 . + . ID=gene-NDY25_17285;Name=NDY25_17285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17285 CP098604.1 Protein Homology CDS 4014995 4016509 . + 0 ID=cds-UUF01664.1;Parent=gene-NDY25_17285;Dbxref=NCBI_GP:UUF01664.1;Name=UUF01664.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237394.1;locus_tag=NDY25_17285;product=hypothetical protein;protein_id=UUF01664.1;transl_table=11 CP098604.1 Genbank gene 4016659 4018761 . - . ID=gene-NDY25_17290;Name=NDY25_17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17290 CP098604.1 Protein Homology CDS 4016659 4018761 . - 0 ID=cds-UUF01665.1;Parent=gene-NDY25_17290;Dbxref=NCBI_GP:UUF01665.1;Name=UUF01665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463485.1;locus_tag=NDY25_17290;product=glycosyltransferase;protein_id=UUF01665.1;transl_table=11 CP098604.1 Genbank gene 4018857 4021304 . + . ID=gene-NDY25_17295;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=NDY25_17295 CP098604.1 Protein Homology CDS 4018857 4021304 . + 0 ID=cds-UUF01666.1;Parent=gene-NDY25_17295;Dbxref=NCBI_GP:UUF01666.1;Name=UUF01666.1;Ontology_term=GO:0009252,GO:0046677,GO:0008233,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=peptidase activity|0008233||IEA,penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116043.1;locus_tag=NDY25_17295;product=penicillin-binding protein 1B;protein_id=UUF01666.1;transl_table=11 CP098604.1 Genbank gene 4021319 4021846 . + . ID=gene-NDY25_17300;Name=NDY25_17300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17300 CP098604.1 Protein Homology CDS 4021319 4021846 . + 0 ID=cds-UUF04700.1;Parent=gene-NDY25_17300;Dbxref=NCBI_GP:UUF04700.1;Name=UUF04700.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348248.1;locus_tag=NDY25_17300;product=hypothetical protein;protein_id=UUF04700.1;transl_table=11 CP098604.1 Genbank gene 4022126 4024132 . + . ID=gene-NDY25_17305;Name=NDY25_17305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17305 CP098604.1 Protein Homology CDS 4022126 4024132 . + 0 ID=cds-UUF01667.1;Parent=gene-NDY25_17305;Dbxref=NCBI_GP:UUF01667.1;Name=UUF01667.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452754.1;locus_tag=NDY25_17305;product=ATP-dependent DNA helicase;protein_id=UUF01667.1;transl_table=11 CP098604.1 Genbank gene 4024056 4024883 . + . ID=gene-NDY25_17310;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=NDY25_17310 CP098604.1 Protein Homology CDS 4024056 4024883 . + 0 ID=cds-UUF01668.1;Parent=gene-NDY25_17310;Dbxref=NCBI_GP:UUF01668.1;Name=UUF01668.1;Ontology_term=GO:0006400,GO:0003725;gbkey=CDS;gene=tsaB;go_function=double-stranded RNA binding|0003725||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258504.1;locus_tag=NDY25_17310;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=UUF01668.1;transl_table=11 CP098604.1 Genbank gene 4025460 4026335 . - . ID=gene-NDY25_17315;Name=NDY25_17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17315 CP098604.1 Protein Homology CDS 4025460 4026335 . - 0 ID=cds-UUF01669.1;Parent=gene-NDY25_17315;Dbxref=NCBI_GP:UUF01669.1;Name=UUF01669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159314.1;locus_tag=NDY25_17315;product=energy transducer TonB;protein_id=UUF01669.1;transl_table=11 CP098604.1 Genbank gene 4026332 4027282 . - . ID=gene-NDY25_17320;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=NDY25_17320 CP098604.1 Protein Homology CDS 4026332 4027282 . - 0 ID=cds-UUF01670.1;Parent=gene-NDY25_17320;Dbxref=NCBI_GP:UUF01670.1;Name=UUF01670.1;Ontology_term=GO:0006750,GO:0004363;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038049.1;locus_tag=NDY25_17320;product=glutathione synthase;protein_id=UUF01670.1;transl_table=11 CP098604.1 Genbank gene 4027519 4027920 . + . ID=gene-NDY25_17325;Name=pilG;gbkey=Gene;gene=pilG;gene_biotype=protein_coding;locus_tag=NDY25_17325 CP098604.1 Protein Homology CDS 4027519 4027920 . + 0 ID=cds-UUF01671.1;Parent=gene-NDY25_17325;Dbxref=NCBI_GP:UUF01671.1;Name=UUF01671.1;gbkey=CDS;gene=pilG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913706.1;locus_tag=NDY25_17325;product=twitching motility response regulator PilG;protein_id=UUF01671.1;transl_table=11 CP098604.1 Genbank gene 4027938 4028300 . + . ID=gene-NDY25_17330;Name=NDY25_17330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17330 CP098604.1 Protein Homology CDS 4027938 4028300 . + 0 ID=cds-UUF01672.1;Parent=gene-NDY25_17330;Dbxref=NCBI_GP:UUF01672.1;Name=UUF01672.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450735.1;locus_tag=NDY25_17330;product=response regulator;protein_id=UUF01672.1;transl_table=11 CP098604.1 Genbank gene 4028300 4028830 . + . ID=gene-NDY25_17335;Name=NDY25_17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17335 CP098604.1 Protein Homology CDS 4028300 4028830 . + 0 ID=cds-UUF01673.1;Parent=gene-NDY25_17335;Dbxref=NCBI_GP:UUF01673.1;Name=UUF01673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508568.1;locus_tag=NDY25_17335;product=chemotaxis protein CheW;protein_id=UUF01673.1;transl_table=11 CP098604.1 Genbank gene 4028870 4030906 . + . ID=gene-NDY25_17340;Name=NDY25_17340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17340 CP098604.1 Protein Homology CDS 4028870 4030906 . + 0 ID=cds-UUF01674.1;Parent=gene-NDY25_17340;Dbxref=NCBI_GP:UUF01674.1;Name=UUF01674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988635.1;locus_tag=NDY25_17340;product=methyl-accepting chemotaxis protein;protein_id=UUF01674.1;transl_table=11 CP098604.1 Genbank gene 4031022 4038242 . + . ID=gene-NDY25_17345;Name=NDY25_17345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17345 CP098604.1 Protein Homology CDS 4031022 4038242 . + 0 ID=cds-UUF01675.1;Parent=gene-NDY25_17345;Dbxref=NCBI_GP:UUF01675.1;Name=UUF01675.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158585.1;locus_tag=NDY25_17345;product=Hpt domain-containing protein;protein_id=UUF01675.1;transl_table=11 CP098604.1 Genbank gene 4038250 4039437 . + . ID=gene-NDY25_17350;Name=NDY25_17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17350 CP098604.1 Protein Homology CDS 4038250 4039437 . + 0 ID=cds-UUF04701.1;Parent=gene-NDY25_17350;Dbxref=NCBI_GP:UUF04701.1;Name=UUF04701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988631.1;locus_tag=NDY25_17350;product=chemotaxis protein;protein_id=UUF04701.1;transl_table=11 CP098604.1 Genbank gene 4039472 4039948 . + . ID=gene-NDY25_17355;Name=NDY25_17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17355 CP098604.1 Protein Homology CDS 4039472 4039948 . + 0 ID=cds-UUF01676.1;Parent=gene-NDY25_17355;Dbxref=NCBI_GP:UUF01676.1;Name=UUF01676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482475.1;locus_tag=NDY25_17355;product=chemotaxis protein CheW;protein_id=UUF01676.1;transl_table=11 CP098604.1 Genbank gene 4039979 4040572 . + . ID=gene-NDY25_17360;Name=NDY25_17360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17360 CP098604.1 Protein Homology CDS 4039979 4040572 . + 0 ID=cds-UUF04702.1;Parent=gene-NDY25_17360;Dbxref=NCBI_GP:UUF04702.1;Name=UUF04702.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450741.1;locus_tag=NDY25_17360;product=GNAT family N-acetyltransferase;protein_id=UUF04702.1;transl_table=11 CP098604.1 Genbank gene 4040778 4041038 . - . ID=gene-NDY25_17365;Name=NDY25_17365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17365 CP098604.1 GeneMarkS-2+ CDS 4040778 4041038 . - 0 ID=cds-UUF01677.1;Parent=gene-NDY25_17365;Dbxref=NCBI_GP:UUF01677.1;Name=UUF01677.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_17365;product=hypothetical protein;protein_id=UUF01677.1;transl_table=11 CP098604.1 Genbank gene 4041769 4042587 . - . ID=gene-NDY25_17370;Name=NDY25_17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17370 CP098604.1 GeneMarkS-2+ CDS 4041769 4042587 . - 0 ID=cds-UUF01678.1;Parent=gene-NDY25_17370;Dbxref=NCBI_GP:UUF01678.1;Name=UUF01678.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_17370;product=hypothetical protein;protein_id=UUF01678.1;transl_table=11 CP098604.1 Genbank gene 4042584 4043156 . - . ID=gene-NDY25_17375;Name=NDY25_17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17375 CP098604.1 Protein Homology CDS 4042584 4043156 . - 0 ID=cds-UUF01679.1;Parent=gene-NDY25_17375;Dbxref=NCBI_GP:UUF01679.1;Name=UUF01679.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437708.1;locus_tag=NDY25_17375;product=sigma-70 family RNA polymerase sigma factor;protein_id=UUF01679.1;transl_table=11 CP098604.1 Genbank pseudogene 4043186 4045001 . - . ID=gene-NDY25_17380;Name=NDY25_17380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17380;pseudo=true CP098604.1 Protein Homology CDS 4043186 4045001 . - 0 ID=cds-NDY25_17380;Parent=gene-NDY25_17380;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437709.1;locus_tag=NDY25_17380;product=VWA domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4045382 4046446 . + . ID=gene-NDY25_17385;Name=NDY25_17385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17385 CP098604.1 Protein Homology CDS 4045382 4046446 . + 0 ID=cds-UUF01680.1;Parent=gene-NDY25_17385;Dbxref=NCBI_GP:UUF01680.1;Name=UUF01680.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038037.1;locus_tag=NDY25_17385;product=isoaspartyl peptidase/L-asparaginase;protein_id=UUF01680.1;transl_table=11 CP098604.1 Genbank gene 4046443 4047174 . + . ID=gene-NDY25_17390;Name=NDY25_17390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17390 CP098604.1 Protein Homology CDS 4046443 4047174 . + 0 ID=cds-UUF01681.1;Parent=gene-NDY25_17390;Dbxref=NCBI_GP:UUF01681.1;Name=UUF01681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482467.1;locus_tag=NDY25_17390;product=copper homeostasis protein CutC;protein_id=UUF01681.1;transl_table=11 CP098604.1 Genbank gene 4047795 4048880 . - . ID=gene-NDY25_17395;Name=NDY25_17395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17395 CP098604.1 Protein Homology CDS 4047795 4048880 . - 0 ID=cds-UUF01682.1;Parent=gene-NDY25_17395;Dbxref=NCBI_GP:UUF01682.1;Name=UUF01682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437713.1;locus_tag=NDY25_17395;product=exo-alpha-sialidase;protein_id=UUF01682.1;transl_table=11 CP098604.1 Genbank gene 4049284 4049613 . + . ID=gene-NDY25_17400;Name=NDY25_17400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17400 CP098604.1 Protein Homology CDS 4049284 4049613 . + 0 ID=cds-UUF01683.1;Parent=gene-NDY25_17400;Dbxref=NCBI_GP:UUF01683.1;Name=UUF01683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155568.1;locus_tag=NDY25_17400;product=RebB family R body protein;protein_id=UUF01683.1;transl_table=11 CP098604.1 Genbank gene 4049670 4049885 . - . ID=gene-NDY25_17405;Name=NDY25_17405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17405 CP098604.1 Protein Homology CDS 4049670 4049885 . - 0 ID=cds-UUF01684.1;Parent=gene-NDY25_17405;Dbxref=NCBI_GP:UUF01684.1;Name=UUF01684.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408193.1;locus_tag=NDY25_17405;product=hypothetical protein;protein_id=UUF01684.1;transl_table=11 CP098604.1 Genbank gene 4050283 4051029 . - . ID=gene-NDY25_17410;Name=NDY25_17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17410 CP098604.1 Protein Homology CDS 4050283 4051029 . - 0 ID=cds-UUF01685.1;Parent=gene-NDY25_17410;Dbxref=NCBI_GP:UUF01685.1;Name=UUF01685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437715.1;locus_tag=NDY25_17410;product=M48 family metallopeptidase;protein_id=UUF01685.1;transl_table=11 CP098604.1 Genbank gene 4051026 4054316 . - . ID=gene-NDY25_17415;Name=NDY25_17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17415 CP098604.1 Protein Homology CDS 4051026 4054316 . - 0 ID=cds-UUF01686.1;Parent=gene-NDY25_17415;Dbxref=NCBI_GP:UUF01686.1;Name=UUF01686.1;Ontology_term=GO:0009307,GO:0009035,GO:0019812;gbkey=CDS;go_component=type I site-specific deoxyribonuclease complex|0019812||IEA;go_function=type I site-specific deoxyribonuclease activity|0009035||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038029.1;locus_tag=NDY25_17415;product=HsdR family type I site-specific deoxyribonuclease;protein_id=UUF01686.1;transl_table=11 CP098604.1 Genbank gene 4054313 4055614 . - . ID=gene-NDY25_17420;Name=NDY25_17420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17420 CP098604.1 Protein Homology CDS 4054313 4055614 . - 0 ID=cds-UUF01687.1;Parent=gene-NDY25_17420;Dbxref=NCBI_GP:UUF01687.1;Name=UUF01687.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904390.1;locus_tag=NDY25_17420;product=restriction endonuclease subunit S;protein_id=UUF01687.1;transl_table=11 CP098604.1 Genbank gene 4055580 4056071 . - . ID=gene-NDY25_17425;Name=NDY25_17425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17425 CP098604.1 Protein Homology CDS 4055580 4056071 . - 0 ID=cds-UUF01688.1;Parent=gene-NDY25_17425;Dbxref=NCBI_GP:UUF01688.1;Name=UUF01688.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024706.2;locus_tag=NDY25_17425;product=virulence RhuM family protein;protein_id=UUF01688.1;transl_table=11 CP098604.1 Genbank gene 4056094 4056231 . - . ID=gene-NDY25_17430;Name=NDY25_17430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17430 CP098604.1 GeneMarkS-2+ CDS 4056094 4056231 . - 0 ID=cds-UUF01689.1;Parent=gene-NDY25_17430;Dbxref=NCBI_GP:UUF01689.1;Name=UUF01689.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_17430;product=hypothetical protein;protein_id=UUF01689.1;transl_table=11 CP098604.1 Genbank gene 4056228 4057082 . - . ID=gene-NDY25_17435;Name=NDY25_17435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17435 CP098604.1 Protein Homology CDS 4056228 4057082 . - 0 ID=cds-UUF01690.1;Parent=gene-NDY25_17435;Dbxref=NCBI_GP:UUF01690.1;Name=UUF01690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237405.1;locus_tag=NDY25_17435;product=damage-inducible protein D;protein_id=UUF01690.1;transl_table=11 CP098604.1 Genbank gene 4057075 4058583 . - . ID=gene-NDY25_17440;Name=NDY25_17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17440 CP098604.1 Protein Homology CDS 4057075 4058583 . - 0 ID=cds-UUF01691.1;Parent=gene-NDY25_17440;Dbxref=NCBI_GP:UUF01691.1;Name=UUF01691.1;Ontology_term=GO:0006306,GO:0009307,GO:0009007,GO:0015666;gbkey=CDS;go_function=site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA,restriction endodeoxyribonuclease activity|0015666||IEA;go_process=DNA methylation|0006306||IEA,DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038026.1;locus_tag=NDY25_17440;product=type I restriction-modification system subunit M;protein_id=UUF01691.1;transl_table=11 CP098604.1 Genbank gene 4058601 4059188 . - . ID=gene-NDY25_17445;Name=NDY25_17445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17445 CP098604.1 Protein Homology CDS 4058601 4059188 . - 0 ID=cds-UUF01692.1;Parent=gene-NDY25_17445;Dbxref=NCBI_GP:UUF01692.1;Name=UUF01692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452952.1;locus_tag=NDY25_17445;product=restriction endonuclease subunit S;protein_id=UUF01692.1;transl_table=11 CP098604.1 Genbank gene 4059358 4059618 . + . ID=gene-NDY25_17450;Name=NDY25_17450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17450 CP098604.1 Protein Homology CDS 4059358 4059618 . + 0 ID=cds-UUF01693.1;Parent=gene-NDY25_17450;Dbxref=NCBI_GP:UUF01693.1;Name=UUF01693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038024.1;locus_tag=NDY25_17450;product=hypothetical protein;protein_id=UUF01693.1;transl_table=11 CP098604.1 Genbank pseudogene 4059923 4060105 . - . ID=gene-NDY25_17455;Name=NDY25_17455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17455;pseudo=true CP098604.1 Protein Homology CDS 4059923 4060105 . - 0 ID=cds-NDY25_17455;Parent=gene-NDY25_17455;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612267.1;locus_tag=NDY25_17455;product=transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4060444 4062825 . + . ID=gene-NDY25_17460;Name=NDY25_17460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17460 CP098604.1 Protein Homology CDS 4060444 4062825 . + 0 ID=cds-UUF01694.1;Parent=gene-NDY25_17460;Dbxref=NCBI_GP:UUF01694.1;Name=UUF01694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904688.1;locus_tag=NDY25_17460;product=type III secretion system effector protein XopK;protein_id=UUF01694.1;transl_table=11 CP098604.1 Genbank gene 4062887 4062962 . - . ID=gene-NDY25_17465;Name=NDY25_17465;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_17465 CP098604.1 cmsearch ncRNA 4062887 4062962 . - . ID=rna-NDY25_17465;Parent=gene-NDY25_17465;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_17465;product=sX9 sRNA CP098604.1 cmsearch exon 4062887 4062962 . - . ID=exon-NDY25_17465-1;Parent=rna-NDY25_17465;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_17465;product=sX9 sRNA CP098604.1 Genbank gene 4063281 4065632 . + . ID=gene-NDY25_17470;Name=NDY25_17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17470 CP098604.1 Protein Homology CDS 4063281 4065632 . + 0 ID=cds-UUF04703.1;Parent=gene-NDY25_17470;Dbxref=NCBI_GP:UUF04703.1;Name=UUF04703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451431.1;locus_tag=NDY25_17470;product=C48 family peptidase;protein_id=UUF04703.1;transl_table=11 CP098604.1 Genbank gene 4065865 4067706 . - . ID=gene-NDY25_17475;Name=NDY25_17475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17475 CP098604.1 Protein Homology CDS 4065865 4067706 . - 0 ID=cds-UUF01695.1;Parent=gene-NDY25_17475;Dbxref=NCBI_GP:UUF01695.1;Name=UUF01695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173652.1;locus_tag=NDY25_17475;product=beta-galactosidase;protein_id=UUF01695.1;transl_table=11 CP098604.1 Genbank gene 4067761 4070106 . - . ID=gene-NDY25_17480;Name=NDY25_17480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17480 CP098604.1 Protein Homology CDS 4067761 4070106 . - 0 ID=cds-UUF01696.1;Parent=gene-NDY25_17480;Dbxref=NCBI_GP:UUF01696.1;Name=UUF01696.1;Ontology_term=GO:0005975,GO:0030246;gbkey=CDS;go_function=carbohydrate binding|0030246||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155572.1;locus_tag=NDY25_17480;product=GH92 family glycosyl hydrolase;protein_id=UUF01696.1;transl_table=11 CP098604.1 Genbank gene 4070241 4071704 . - . ID=gene-NDY25_17485;Name=NDY25_17485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17485 CP098604.1 Protein Homology CDS 4070241 4071704 . - 0 ID=cds-UUF01697.1;Parent=gene-NDY25_17485;Dbxref=NCBI_GP:UUF01697.1;Name=UUF01697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813906.1;locus_tag=NDY25_17485;product=glycoside hydrolase family 125 protein;protein_id=UUF01697.1;transl_table=11 CP098604.1 Genbank gene 4071908 4073332 . - . ID=gene-NDY25_17490;Name=NDY25_17490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17490 CP098604.1 Protein Homology CDS 4071908 4073332 . - 0 ID=cds-UUF01698.1;Parent=gene-NDY25_17490;Dbxref=NCBI_GP:UUF01698.1;Name=UUF01698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482450.1;locus_tag=NDY25_17490;product=6-phospho-beta-glucosidase;protein_id=UUF01698.1;transl_table=11 CP098604.1 Genbank gene 4073329 4074264 . - . ID=gene-NDY25_17495;Name=NDY25_17495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17495 CP098604.1 Protein Homology CDS 4073329 4074264 . - 0 ID=cds-UUF01699.1;Parent=gene-NDY25_17495;Dbxref=NCBI_GP:UUF01699.1;Name=UUF01699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052024.1;locus_tag=NDY25_17495;product=carbohydrate kinase family protein;protein_id=UUF01699.1;transl_table=11 CP098604.1 Genbank gene 4074243 4074797 . - . ID=gene-NDY25_17500;Name=NDY25_17500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17500 CP098604.1 Protein Homology CDS 4074243 4074797 . - 0 ID=cds-UUF01700.1;Parent=gene-NDY25_17500;Dbxref=NCBI_GP:UUF01700.1;Name=UUF01700.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF024910.2;locus_tag=NDY25_17500;product=amino acid permease;protein_id=UUF01700.1;transl_table=11 CP098604.1 Genbank gene 4074767 4075609 . - . ID=gene-NDY25_17505;Name=NDY25_17505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17505 CP098604.1 Protein Homology CDS 4074767 4075609 . - 0 ID=cds-UUF01701.1;Parent=gene-NDY25_17505;Dbxref=NCBI_GP:UUF01701.1;Name=UUF01701.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024910.2;locus_tag=NDY25_17505;product=APC family permease;protein_id=UUF01701.1;transl_table=11 CP098604.1 Genbank gene 4075603 4077516 . - . ID=gene-NDY25_17510;Name=NDY25_17510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17510 CP098604.1 Protein Homology CDS 4075603 4077516 . - 0 ID=cds-UUF01702.1;Parent=gene-NDY25_17510;Dbxref=NCBI_GP:UUF01702.1;Name=UUF01702.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451438.1;locus_tag=NDY25_17510;product=beta-galactosidase;protein_id=UUF01702.1;transl_table=11 CP098604.1 Genbank gene 4077595 4080483 . - . ID=gene-NDY25_17515;Name=NDY25_17515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17515 CP098604.1 Protein Homology CDS 4077595 4080483 . - 0 ID=cds-UUF04704.1;Parent=gene-NDY25_17515;Dbxref=NCBI_GP:UUF04704.1;Name=UUF04704.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482441.1;locus_tag=NDY25_17515;product=TonB-dependent receptor;protein_id=UUF04704.1;transl_table=11 CP098604.1 Genbank pseudogene 4081223 4083890 . - . ID=gene-NDY25_17520;Name=NDY25_17520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17520;pseudo=true CP098604.1 Protein Homology CDS 4081223 4083890 . - 0 ID=cds-NDY25_17520;Parent=gene-NDY25_17520;Note=frameshifted;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155574.1;locus_tag=NDY25_17520;product=glycoside hydrolase family 3 C-terminal domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4084042 4084118 . + . ID=gene-NDY25_17525;Name=NDY25_17525;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_17525 CP098604.1 cmsearch ncRNA 4084042 4084118 . + . ID=rna-NDY25_17525;Parent=gene-NDY25_17525;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_17525;product=sX9 sRNA CP098604.1 cmsearch exon 4084042 4084118 . + . ID=exon-NDY25_17525-1;Parent=rna-NDY25_17525;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_17525;product=sX9 sRNA CP098604.1 Genbank gene 4084269 4086950 . - . ID=gene-NDY25_17530;Name=NDY25_17530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17530 CP098604.1 Protein Homology CDS 4084269 4086950 . - 0 ID=cds-UUF01703.1;Parent=gene-NDY25_17530;Dbxref=NCBI_GP:UUF01703.1;Name=UUF01703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504091.1;locus_tag=NDY25_17530;product=glycoside hydrolase family 2 protein;protein_id=UUF01703.1;transl_table=11 CP098604.1 Genbank gene 4086972 4089461 . - . ID=gene-NDY25_17535;Name=NDY25_17535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17535 CP098604.1 Protein Homology CDS 4086972 4089461 . - 0 ID=cds-UUF01704.1;Parent=gene-NDY25_17535;Dbxref=NCBI_GP:UUF01704.1;Name=UUF01704.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919009.1;locus_tag=NDY25_17535;product=family 20 glycosylhydrolase;protein_id=UUF01704.1;transl_table=11 CP098604.1 Genbank gene 4089716 4090771 . - . ID=gene-NDY25_17540;Name=NDY25_17540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17540 CP098604.1 Protein Homology CDS 4089716 4090771 . - 0 ID=cds-UUF01705.1;Parent=gene-NDY25_17540;Dbxref=NCBI_GP:UUF01705.1;Name=UUF01705.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970189.1;locus_tag=NDY25_17540;product=glycosyl hydrolase family 18 protein;protein_id=UUF01705.1;transl_table=11 CP098604.1 Genbank gene 4090786 4092477 . - . ID=gene-NDY25_17545;Name=NDY25_17545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17545 CP098604.1 Protein Homology CDS 4090786 4092477 . - 0 ID=cds-UUF01706.1;Parent=gene-NDY25_17545;Dbxref=NCBI_GP:UUF01706.1;Name=UUF01706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161486.1;locus_tag=NDY25_17545;product=alpha-L-fucosidase;protein_id=UUF01706.1;transl_table=11 CP098604.1 Genbank pseudogene 4092686 4095373 . - . ID=gene-NDY25_17550;Name=NDY25_17550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17550;pseudo=true CP098604.1 Protein Homology CDS 4092686 4095373 . - 0 ID=cds-NDY25_17550;Parent=gene-NDY25_17550;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164668.1;locus_tag=NDY25_17550;product=TonB-dependent receptor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4096094 4097092 . + . ID=gene-NDY25_17555;Name=NDY25_17555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17555 CP098604.1 Protein Homology CDS 4096094 4097092 . + 0 ID=cds-UUF04705.1;Parent=gene-NDY25_17555;Dbxref=NCBI_GP:UUF04705.1;Name=UUF04705.1;Ontology_term=GO:0006096,GO:0004340;gbkey=CDS;go_function=glucokinase activity|0004340||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988601.1;locus_tag=NDY25_17555;product=glucokinase;protein_id=UUF04705.1;transl_table=11 CP098604.1 Genbank gene 4097258 4097992 . - . ID=gene-NDY25_17560;Name=NDY25_17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17560 CP098604.1 Protein Homology CDS 4097258 4097992 . - 0 ID=cds-UUF01707.1;Parent=gene-NDY25_17560;Dbxref=NCBI_GP:UUF01707.1;Name=UUF01707.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931477.1;locus_tag=NDY25_17560;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=UUF01707.1;transl_table=11 CP098604.1 Genbank gene 4097983 4099401 . - . ID=gene-NDY25_17565;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=NDY25_17565 CP098604.1 Protein Homology CDS 4097983 4099401 . - 0 ID=cds-UUF01708.1;Parent=gene-NDY25_17565;Dbxref=NCBI_GP:UUF01708.1;Name=UUF01708.1;Ontology_term=GO:0009102,GO:0004015;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851465.1;locus_tag=NDY25_17565;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=UUF01708.1;transl_table=11 CP098604.1 Genbank gene 4099443 4099991 . + . ID=gene-NDY25_17570;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=NDY25_17570 CP098604.1 Protein Homology CDS 4099443 4099991 . + 0 ID=cds-UUF01709.1;Parent=gene-NDY25_17570;Dbxref=NCBI_GP:UUF01709.1;Name=UUF01709.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090754.1;locus_tag=NDY25_17570;product=ADP compounds hydrolase NudE;protein_id=UUF01709.1;transl_table=11 CP098604.1 Genbank gene 4099988 4100788 . + . ID=gene-NDY25_17575;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=NDY25_17575 CP098604.1 Protein Homology CDS 4099988 4100788 . + 0 ID=cds-UUF01710.1;Parent=gene-NDY25_17575;Dbxref=NCBI_GP:UUF01710.1;Name=UUF01710.1;Ontology_term=GO:0006790,GO:0008441;gbkey=CDS;gene=cysQ;go_function=3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011038007.1;locus_tag=NDY25_17575;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=UUF01710.1;transl_table=11 CP098604.1 Genbank gene 4100797 4101771 . + . ID=gene-NDY25_17580;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=NDY25_17580 CP098604.1 Protein Homology CDS 4100797 4101771 . + 0 ID=cds-UUF01711.1;Parent=gene-NDY25_17580;Dbxref=NCBI_GP:UUF01711.1;Name=UUF01711.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451452.1;locus_tag=NDY25_17580;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=UUF01711.1;transl_table=11 CP098604.1 Genbank gene 4101768 4102103 . + . ID=gene-NDY25_17585;Name=NDY25_17585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17585 CP098604.1 Protein Homology CDS 4101768 4102103 . + 0 ID=cds-UUF01712.1;Parent=gene-NDY25_17585;Dbxref=NCBI_GP:UUF01712.1;Name=UUF01712.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451453.1;locus_tag=NDY25_17585;product=YnfA family protein;protein_id=UUF01712.1;transl_table=11 CP098604.1 Genbank gene 4102300 4103409 . + . ID=gene-NDY25_17590;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=NDY25_17590 CP098604.1 Protein Homology CDS 4102300 4103409 . + 0 ID=cds-UUF01713.1;Parent=gene-NDY25_17590;Dbxref=NCBI_GP:UUF01713.1;Name=UUF01713.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811293.1;locus_tag=NDY25_17590;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=UUF01713.1;transl_table=11 CP098604.1 Genbank gene 4103551 4103946 . + . ID=gene-NDY25_17595;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=NDY25_17595 CP098604.1 Protein Homology CDS 4103551 4103946 . + 0 ID=cds-UUF01714.1;Parent=gene-NDY25_17595;Dbxref=NCBI_GP:UUF01714.1;Name=UUF01714.1;Ontology_term=GO:0019464,GO:0003824;gbkey=CDS;gene=gcvH;go_function=catalytic activity|0003824||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368686.1;locus_tag=NDY25_17595;product=glycine cleavage system protein GcvH;protein_id=UUF01714.1;transl_table=11 CP098604.1 Genbank gene 4104985 4105452 . + . ID=gene-NDY25_17600;Name=NDY25_17600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17600 CP098604.1 GeneMarkS-2+ CDS 4104985 4105452 . + 0 ID=cds-UUF01715.1;Parent=gene-NDY25_17600;Dbxref=NCBI_GP:UUF01715.1;Name=UUF01715.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_17600;product=hypothetical protein;protein_id=UUF01715.1;transl_table=11 CP098604.1 Genbank gene 4105607 4106950 . - . ID=gene-NDY25_17605;Name=NDY25_17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17605 CP098604.1 Protein Homology CDS 4105607 4106950 . - 0 ID=cds-UUF04706.1;Parent=gene-NDY25_17605;Dbxref=NCBI_GP:UUF04706.1;Name=UUF04706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504072.1;locus_tag=NDY25_17605;product=beta-lactamase family protein;protein_id=UUF04706.1;transl_table=11 CP098604.1 Genbank gene 4107320 4108684 . + . ID=gene-NDY25_17610;Name=NDY25_17610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17610 CP098604.1 Protein Homology CDS 4107320 4108684 . + 0 ID=cds-UUF01716.1;Parent=gene-NDY25_17610;Dbxref=NCBI_GP:UUF01716.1;Name=UUF01716.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849238.1;locus_tag=NDY25_17610;product=MFS transporter;protein_id=UUF01716.1;transl_table=11 CP098604.1 Genbank gene 4109669 4110022 . + . ID=gene-NDY25_17615;Name=NDY25_17615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17615 CP098604.1 Protein Homology CDS 4109669 4110022 . + 0 ID=cds-UUF01717.1;Parent=gene-NDY25_17615;Dbxref=NCBI_GP:UUF01717.1;Name=UUF01717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368701.1;locus_tag=NDY25_17615;product=DUF1304 domain-containing protein;protein_id=UUF01717.1;transl_table=11 CP098604.1 Genbank gene 4110250 4112724 . - . ID=gene-NDY25_17620;Name=NDY25_17620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17620 CP098604.1 Protein Homology CDS 4110250 4112724 . - 0 ID=cds-UUF01718.1;Parent=gene-NDY25_17620;Dbxref=NCBI_GP:UUF01718.1;Name=UUF01718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090746.1;locus_tag=NDY25_17620;product=acyl-CoA dehydrogenase;protein_id=UUF01718.1;transl_table=11 CP098604.1 Genbank gene 4112721 4113644 . - . ID=gene-NDY25_17625;Name=NDY25_17625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17625 CP098604.1 Protein Homology CDS 4112721 4113644 . - 0 ID=cds-UUF01719.1;Parent=gene-NDY25_17625;Dbxref=NCBI_GP:UUF01719.1;Name=UUF01719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166286.1;locus_tag=NDY25_17625;product=alpha/beta hydrolase;protein_id=UUF01719.1;transl_table=11 CP098604.1 Genbank gene 4113782 4114390 . + . ID=gene-NDY25_17630;Name=NDY25_17630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17630 CP098604.1 Protein Homology CDS 4113782 4114390 . + 0 ID=cds-UUF01720.1;Parent=gene-NDY25_17630;Dbxref=NCBI_GP:UUF01720.1;Name=UUF01720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988563.1;locus_tag=NDY25_17630;product=TetR/AcrR family transcriptional regulator;protein_id=UUF01720.1;transl_table=11 CP098604.1 Genbank gene 4114498 4117269 . - . ID=gene-NDY25_17635;Name=NDY25_17635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17635 CP098604.1 Protein Homology CDS 4114498 4117269 . - 0 ID=cds-UUF01721.1;Parent=gene-NDY25_17635;Dbxref=NCBI_GP:UUF01721.1;Name=UUF01721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237424.1;locus_tag=NDY25_17635;product=TonB-dependent receptor;protein_id=UUF01721.1;transl_table=11 CP098604.1 Genbank gene 4117512 4118351 . - . ID=gene-NDY25_17640;Name=NDY25_17640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17640 CP098604.1 Protein Homology CDS 4117512 4118351 . - 0 ID=cds-UUF04707.1;Parent=gene-NDY25_17640;Dbxref=NCBI_GP:UUF04707.1;Name=UUF04707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572079.1;locus_tag=NDY25_17640;product=hypothetical protein;protein_id=UUF04707.1;transl_table=11 CP098604.1 Genbank gene 4118505 4119395 . - . ID=gene-NDY25_17645;Name=NDY25_17645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17645 CP098604.1 Protein Homology CDS 4118505 4119395 . - 0 ID=cds-UUF01722.1;Parent=gene-NDY25_17645;Dbxref=NCBI_GP:UUF01722.1;Name=UUF01722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368716.1;locus_tag=NDY25_17645;product=Hsp33 family molecular chaperone HslO;protein_id=UUF01722.1;transl_table=11 CP098604.1 Genbank gene 4119471 4120202 . + . ID=gene-NDY25_17650;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=NDY25_17650 CP098604.1 Protein Homology CDS 4119471 4120202 . + 0 ID=cds-UUF01723.1;Parent=gene-NDY25_17650;Dbxref=NCBI_GP:UUF01723.1;Name=UUF01723.1;Ontology_term=GO:0009252,GO:0009274,GO:0016021;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,integral component of membrane|0016021||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037989.1;locus_tag=NDY25_17650;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=UUF01723.1;transl_table=11 CP098604.1 Genbank gene 4120205 4121251 . + . ID=gene-NDY25_17655;Name=NDY25_17655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17655 CP098604.1 Protein Homology CDS 4120205 4121251 . + 0 ID=cds-UUF01724.1;Parent=gene-NDY25_17655;Dbxref=NCBI_GP:UUF01724.1;Name=UUF01724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157863.1;locus_tag=NDY25_17655;product=glycosyltransferase family 2 protein;protein_id=UUF01724.1;transl_table=11 CP098604.1 Genbank gene 4121211 4121639 . + . ID=gene-NDY25_17660;Name=NDY25_17660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17660 CP098604.1 Protein Homology CDS 4121211 4121639 . + 0 ID=cds-UUF01725.1;Parent=gene-NDY25_17660;Dbxref=NCBI_GP:UUF01725.1;Name=UUF01725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090742.1;locus_tag=NDY25_17660;product=CBS domain-containing protein;protein_id=UUF01725.1;transl_table=11 CP098604.1 Genbank pseudogene 4122143 4123065 . - . ID=gene-NDY25_17665;Name=NDY25_17665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17665;pseudo=true CP098604.1 Protein Homology CDS 4122143 4123065 . - 0 ID=cds-NDY25_17665;Parent=gene-NDY25_17665;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012509957.1;locus_tag=NDY25_17665;product=IS110 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4123541 4125496 . - . ID=gene-NDY25_17670;Name=NDY25_17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17670 CP098604.1 Protein Homology CDS 4123541 4125496 . - 0 ID=cds-UUF01726.1;Parent=gene-NDY25_17670;Dbxref=NCBI_GP:UUF01726.1;Name=UUF01726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157861.1;locus_tag=NDY25_17670;product=AsmA family protein;protein_id=UUF01726.1;transl_table=11 CP098604.1 Genbank gene 4125573 4126217 . - . ID=gene-NDY25_17675;Name=NDY25_17675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17675 CP098604.1 Protein Homology CDS 4125573 4126217 . - 0 ID=cds-UUF01727.1;Parent=gene-NDY25_17675;Dbxref=NCBI_GP:UUF01727.1;Name=UUF01727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301897.1;locus_tag=NDY25_17675;product=hemolysin III family protein;protein_id=UUF01727.1;transl_table=11 CP098604.1 Genbank gene 4126293 4127897 . - . ID=gene-NDY25_17680;Name=NDY25_17680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17680 CP098604.1 Protein Homology CDS 4126293 4127897 . - 0 ID=cds-UUF01728.1;Parent=gene-NDY25_17680;Dbxref=NCBI_GP:UUF01728.1;Name=UUF01728.1;Ontology_term=GO:0006415,GO:0003924;gbkey=CDS;go_function=GTPase activity|0003924||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157859.1;locus_tag=NDY25_17680;product=peptide chain release factor 3;protein_id=UUF01728.1;transl_table=11 CP098604.1 Genbank gene 4128033 4128944 . - . ID=gene-NDY25_17685;Name=NDY25_17685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17685 CP098604.1 Protein Homology CDS 4128033 4128944 . - 0 ID=cds-UUF01729.1;Parent=gene-NDY25_17685;Dbxref=NCBI_GP:UUF01729.1;Name=UUF01729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348199.1;locus_tag=NDY25_17685;product=M23 family metallopeptidase;protein_id=UUF01729.1;transl_table=11 CP098604.1 cmsearch riboswitch 4129074 4129194 . + . ID=id-CP098604.1:4129074..4129194;Dbxref=RFAM:RF00162;Note=SAM riboswitch class I;bound_moiety=S-adenosylmethionine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.1;regulatory_class=riboswitch CP098604.1 Genbank gene 4129266 4130297 . + . ID=gene-NDY25_17690;Name=NDY25_17690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17690 CP098604.1 Protein Homology CDS 4129266 4130297 . + 0 ID=cds-UUF01730.1;Parent=gene-NDY25_17690;Dbxref=NCBI_GP:UUF01730.1;Name=UUF01730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348198.1;locus_tag=NDY25_17690;product=homoserine O-succinyltransferase;protein_id=UUF01730.1;transl_table=11 CP098604.1 Genbank gene 4130294 4131511 . + . ID=gene-NDY25_17695;Name=NDY25_17695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17695 CP098604.1 Protein Homology CDS 4130294 4131511 . + 0 ID=cds-UUF01731.1;Parent=gene-NDY25_17695;Dbxref=NCBI_GP:UUF01731.1;Name=UUF01731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157856.1;locus_tag=NDY25_17695;product=O-succinylhomoserine (thiol)-lyase;protein_id=UUF01731.1;transl_table=11 CP098604.1 Genbank gene 4131508 4132596 . + . ID=gene-NDY25_17700;Name=NDY25_17700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17700 CP098604.1 Protein Homology CDS 4131508 4132596 . + 0 ID=cds-UUF01732.1;Parent=gene-NDY25_17700;Dbxref=NCBI_GP:UUF01732.1;Name=UUF01732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007967946.1;locus_tag=NDY25_17700;product=homoserine dehydrogenase;protein_id=UUF01732.1;transl_table=11 CP098604.1 Genbank gene 4132793 4133788 . - . ID=gene-NDY25_17705;Name=NDY25_17705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17705 CP098604.1 Protein Homology CDS 4132793 4133788 . - 0 ID=cds-UUF01733.1;Parent=gene-NDY25_17705;Dbxref=NCBI_GP:UUF01733.1;Name=UUF01733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508519.1;locus_tag=NDY25_17705;product=alpha/beta hydrolase;protein_id=UUF01733.1;transl_table=11 CP098604.1 Genbank gene 4134059 4135441 . - . ID=gene-NDY25_17710;Name=NDY25_17710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17710 CP098604.1 Protein Homology CDS 4134059 4135441 . - 0 ID=cds-UUF01734.1;Parent=gene-NDY25_17710;Dbxref=NCBI_GP:UUF01734.1;Name=UUF01734.1;Ontology_term=GO:0009063,GO:0003941,GO:0051539;gbkey=CDS;go_function=L-serine ammonia-lyase activity|0003941||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=cellular amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014161485.1;locus_tag=NDY25_17710;product=L-serine ammonia-lyase;protein_id=UUF01734.1;transl_table=11 CP098604.1 Genbank gene 4135529 4135762 . + . ID=gene-NDY25_17715;Name=NDY25_17715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17715 CP098604.1 Protein Homology CDS 4135529 4135762 . + 0 ID=cds-UUF01735.1;Parent=gene-NDY25_17715;Dbxref=NCBI_GP:UUF01735.1;Name=UUF01735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449619.1;locus_tag=NDY25_17715;product=glutaredoxin family protein;protein_id=UUF01735.1;transl_table=11 CP098604.1 Genbank gene 4136272 4136856 . - . ID=gene-NDY25_17720;Name=NDY25_17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17720 CP098604.1 Protein Homology CDS 4136272 4136856 . - 0 ID=cds-UUF04708.1;Parent=gene-NDY25_17720;Dbxref=NCBI_GP:UUF04708.1;Name=UUF04708.1;Ontology_term=GO:0003676;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504048.1;locus_tag=NDY25_17720;product=cold shock domain-containing protein;protein_id=UUF04708.1;transl_table=11 CP098604.1 Genbank gene 4136989 4137558 . - . ID=gene-NDY25_17725;Name=NDY25_17725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17725 CP098604.1 Protein Homology CDS 4136989 4137558 . - 0 ID=cds-UUF01736.1;Parent=gene-NDY25_17725;Dbxref=NCBI_GP:UUF01736.1;Name=UUF01736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504047.1;locus_tag=NDY25_17725;product=YceI family protein;protein_id=UUF01736.1;transl_table=11 CP098604.1 Genbank gene 4137569 4138132 . - . ID=gene-NDY25_17730;Name=NDY25_17730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17730 CP098604.1 Protein Homology CDS 4137569 4138132 . - 0 ID=cds-UUF01737.1;Parent=gene-NDY25_17730;Dbxref=NCBI_GP:UUF01737.1;Name=UUF01737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017907780.1;locus_tag=NDY25_17730;product=cytochrome b;protein_id=UUF01737.1;transl_table=11 CP098604.1 Genbank gene 4138135 4138791 . - . ID=gene-NDY25_17735;Name=NDY25_17735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17735 CP098604.1 Protein Homology CDS 4138135 4138791 . - 0 ID=cds-UUF01738.1;Parent=gene-NDY25_17735;Dbxref=NCBI_GP:UUF01738.1;Name=UUF01738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904746.1;locus_tag=NDY25_17735;product=YceI family protein;protein_id=UUF01738.1;transl_table=11 CP098604.1 Genbank gene 4138887 4142456 . + . ID=gene-NDY25_17740;Name=NDY25_17740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17740 CP098604.1 Protein Homology CDS 4138887 4142456 . + 0 ID=cds-UUF01739.1;Parent=gene-NDY25_17740;Dbxref=NCBI_GP:UUF01739.1;Name=UUF01739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450663.1;locus_tag=NDY25_17740;product=ATP-binding protein;protein_id=UUF01739.1;transl_table=11 CP098604.1 Genbank pseudogene 4142542 4146095 . + . ID=gene-NDY25_17745;Name=NDY25_17745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17745;pseudo=true CP098604.1 Protein Homology CDS 4142542 4146095 . + 0 ID=cds-NDY25_17745;Parent=gene-NDY25_17745;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157847.1;locus_tag=NDY25_17745;product=ATP-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 4146221 4149759 . + . ID=gene-NDY25_17750;Name=NDY25_17750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17750;pseudo=true CP098604.1 Protein Homology CDS 4146221 4149759 . + 0 ID=cds-NDY25_17750;Parent=gene-NDY25_17750;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014504041.1;locus_tag=NDY25_17750;product=ATP-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4149835 4151256 . - . ID=gene-NDY25_17755;Name=mdtD;gbkey=Gene;gene=mdtD;gene_biotype=protein_coding;locus_tag=NDY25_17755 CP098604.1 Protein Homology CDS 4149835 4151256 . - 0 ID=cds-UUF01740.1;Parent=gene-NDY25_17755;Dbxref=NCBI_GP:UUF01740.1;Name=UUF01740.1;Ontology_term=GO:0055085,GO:0022857,GO:0016021;gbkey=CDS;gene=mdtD;go_component=integral component of membrane|0016021||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157844.1;locus_tag=NDY25_17755;product=multidrug transporter subunit MdtD;protein_id=UUF01740.1;transl_table=11 CP098604.1 Genbank gene 4151821 4152885 . - . ID=gene-NDY25_17760;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=NDY25_17760 CP098604.1 Protein Homology CDS 4151821 4152885 . - 0 ID=cds-UUF01741.1;Parent=gene-NDY25_17760;Dbxref=NCBI_GP:UUF01741.1;Name=UUF01741.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407863.1;locus_tag=NDY25_17760;product=uroporphyrinogen decarboxylase;protein_id=UUF01741.1;transl_table=11 CP098604.1 Genbank gene 4152895 4153146 . - . ID=gene-NDY25_17765;Name=NDY25_17765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17765 CP098604.1 Protein Homology CDS 4152895 4153146 . - 0 ID=cds-UUF01742.1;Parent=gene-NDY25_17765;Dbxref=NCBI_GP:UUF01742.1;Name=UUF01742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158980.1;locus_tag=NDY25_17765;product=WGR domain-containing protein;protein_id=UUF01742.1;transl_table=11 CP098604.1 Genbank gene 4153326 4154438 . - . ID=gene-NDY25_17770;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=NDY25_17770 CP098604.1 Protein Homology CDS 4153326 4154438 . - 0 ID=cds-UUF01743.1;Parent=gene-NDY25_17770;Dbxref=NCBI_GP:UUF01743.1;Name=UUF01743.1;Ontology_term=GO:0009423,GO:0003856;gbkey=CDS;gene=aroB;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807954.1;locus_tag=NDY25_17770;product=3-dehydroquinate synthase;protein_id=UUF01743.1;transl_table=11 CP098604.1 Genbank gene 4154435 4154977 . - . ID=gene-NDY25_17775;Name=NDY25_17775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17775 CP098604.1 Protein Homology CDS 4154435 4154977 . - 0 ID=cds-UUF01744.1;Parent=gene-NDY25_17775;Dbxref=NCBI_GP:UUF01744.1;Name=UUF01744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917545.1;locus_tag=NDY25_17775;product=shikimate kinase;protein_id=UUF01744.1;transl_table=11 CP098604.1 Genbank gene 4155184 4155783 . + . ID=gene-NDY25_17780;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=NDY25_17780 CP098604.1 Protein Homology CDS 4155184 4155783 . + 0 ID=cds-UUF01745.1;Parent=gene-NDY25_17780;Dbxref=NCBI_GP:UUF01745.1;Name=UUF01745.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine-phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010381128.1;locus_tag=NDY25_17780;product=pyridoxamine 5'-phosphate oxidase;protein_id=UUF01745.1;transl_table=11 CP098604.1 Genbank gene 4155780 4156250 . + . ID=gene-NDY25_17785;Name=NDY25_17785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17785 CP098604.1 Protein Homology CDS 4155780 4156250 . + 0 ID=cds-UUF01746.1;Parent=gene-NDY25_17785;Dbxref=NCBI_GP:UUF01746.1;Name=UUF01746.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904372.1;locus_tag=NDY25_17785;product=GNAT family N-acetyltransferase;protein_id=UUF01746.1;transl_table=11 CP098604.1 Genbank gene 4156377 4156793 . + . ID=gene-NDY25_17790;Name=NDY25_17790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17790 CP098604.1 Protein Homology CDS 4156377 4156793 . + 0 ID=cds-UUF01747.1;Parent=gene-NDY25_17790;Dbxref=NCBI_GP:UUF01747.1;Name=UUF01747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489526.1;locus_tag=NDY25_17790;product=YjfI family protein;protein_id=UUF01747.1;transl_table=11 CP098604.1 Genbank gene 4156812 4157576 . + . ID=gene-NDY25_17795;Name=NDY25_17795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17795 CP098604.1 Protein Homology CDS 4156812 4157576 . + 0 ID=cds-UUF04709.1;Parent=gene-NDY25_17795;Dbxref=NCBI_GP:UUF04709.1;Name=UUF04709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302374.1;locus_tag=NDY25_17795;product=PspA/IM30 family protein;protein_id=UUF04709.1;transl_table=11 CP098604.1 Genbank gene 4157602 4158684 . + . ID=gene-NDY25_17800;Name=NDY25_17800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17800 CP098604.1 Protein Homology CDS 4157602 4158684 . + 0 ID=cds-UUF01748.1;Parent=gene-NDY25_17800;Dbxref=NCBI_GP:UUF01748.1;Name=UUF01748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449072.1;locus_tag=NDY25_17800;product=ion channel;protein_id=UUF01748.1;transl_table=11 CP098604.1 Genbank gene 4158681 4159358 . + . ID=gene-NDY25_17805;Name=NDY25_17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17805 CP098604.1 Protein Homology CDS 4158681 4159358 . + 0 ID=cds-UUF01749.1;Parent=gene-NDY25_17805;Dbxref=NCBI_GP:UUF01749.1;Name=UUF01749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237428.1;locus_tag=NDY25_17805;product=YjfK family protein;protein_id=UUF01749.1;transl_table=11 CP098604.1 Genbank gene 4159396 4159800 . + . ID=gene-NDY25_17810;Name=NDY25_17810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17810 CP098604.1 Protein Homology CDS 4159396 4159800 . + 0 ID=cds-UUF01750.1;Parent=gene-NDY25_17810;Dbxref=NCBI_GP:UUF01750.1;Name=UUF01750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807970.1;locus_tag=NDY25_17810;product=DUF350 domain-containing protein;protein_id=UUF01750.1;transl_table=11 CP098604.1 Genbank gene 4159813 4160391 . + . ID=gene-NDY25_17815;Name=NDY25_17815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17815 CP098604.1 Protein Homology CDS 4159813 4160391 . + 0 ID=cds-UUF01751.1;Parent=gene-NDY25_17815;Dbxref=NCBI_GP:UUF01751.1;Name=UUF01751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965639.1;locus_tag=NDY25_17815;product=DUF1190 domain-containing protein;protein_id=UUF01751.1;transl_table=11 CP098604.1 Genbank gene 4160393 4161559 . + . ID=gene-NDY25_17820;Name=NDY25_17820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17820 CP098604.1 Protein Homology CDS 4160393 4161559 . + 0 ID=cds-UUF01752.1;Parent=gene-NDY25_17820;Dbxref=NCBI_GP:UUF01752.1;Name=UUF01752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171699.1;locus_tag=NDY25_17820;product=glutathionylspermidine synthase family protein;protein_id=UUF01752.1;transl_table=11 CP098604.1 Genbank pseudogene 4161962 4163311 . - . ID=gene-NDY25_17825;Name=NDY25_17825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17825;pseudo=true CP098604.1 Protein Homology CDS 4161962 4163311 . - 0 ID=cds-NDY25_17825;Parent=gene-NDY25_17825;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449067.1;locus_tag=NDY25_17825;product=MFS transporter;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4163424 4163870 . + . ID=gene-NDY25_17830;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=NDY25_17830 CP098604.1 Protein Homology CDS 4163424 4163870 . + 0 ID=cds-UUF04710.1;Parent=gene-NDY25_17830;Dbxref=NCBI_GP:UUF04710.1;Name=UUF04710.1;Ontology_term=GO:0006355,GO:0006979,GO:0003677,GO:0003700,GO:0051537;gbkey=CDS;gene=soxR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965644.1;locus_tag=NDY25_17830;product=redox-sensitive transcriptional activator SoxR;protein_id=UUF04710.1;transl_table=11 CP098604.1 Genbank gene 4164464 4166470 . + . ID=gene-NDY25_17835;Name=NDY25_17835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17835 CP098604.1 Protein Homology CDS 4164464 4166470 . + 0 ID=cds-UUF01753.1;Parent=gene-NDY25_17835;Dbxref=NCBI_GP:UUF01753.1;Name=UUF01753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851403.1;locus_tag=NDY25_17835;product=M1 family metallopeptidase;protein_id=UUF01753.1;transl_table=11 CP098604.1 Genbank gene 4166467 4166820 . - . ID=gene-NDY25_17840;Name=NDY25_17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17840 CP098604.1 GeneMarkS-2+ CDS 4166467 4166820 . - 0 ID=cds-UUF01754.1;Parent=gene-NDY25_17840;Dbxref=NCBI_GP:UUF01754.1;Name=UUF01754.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_17840;product=hypothetical protein;protein_id=UUF01754.1;transl_table=11 CP098604.1 Genbank gene 4167266 4170424 . + . ID=gene-NDY25_17845;Name=NDY25_17845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17845 CP098604.1 Protein Homology CDS 4167266 4170424 . + 0 ID=cds-UUF01755.1;Parent=gene-NDY25_17845;Dbxref=NCBI_GP:UUF01755.1;Name=UUF01755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489548.1;locus_tag=NDY25_17845;product=TonB-dependent receptor;protein_id=UUF01755.1;transl_table=11 CP098604.1 Genbank gene 4170874 4171635 . + . ID=gene-NDY25_17850;Name=NDY25_17850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17850 CP098604.1 Protein Homology CDS 4170874 4171635 . + 0 ID=cds-UUF01756.1;Parent=gene-NDY25_17850;Dbxref=NCBI_GP:UUF01756.1;Name=UUF01756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051964.1;locus_tag=NDY25_17850;product=SapC family protein;protein_id=UUF01756.1;transl_table=11 CP098604.1 Genbank gene 4171661 4172689 . + . ID=gene-NDY25_17855;Name=NDY25_17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17855 CP098604.1 Protein Homology CDS 4171661 4172689 . + 0 ID=cds-UUF01757.1;Parent=gene-NDY25_17855;Dbxref=NCBI_GP:UUF01757.1;Name=UUF01757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995069.1;locus_tag=NDY25_17855;product=cupin-like domain-containing protein;protein_id=UUF01757.1;transl_table=11 CP098604.1 Genbank pseudogene 4172730 4174223 . + . ID=gene-NDY25_17860;Name=NDY25_17860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_17860;pseudo=true CP098604.1 Protein Homology CDS 4172730 4174223 . + 0 ID=cds-NDY25_17860;Parent=gene-NDY25_17860;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173993.1;locus_tag=NDY25_17860;product=tryptophan 7-halogenase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4174264 4175271 . - . ID=gene-NDY25_17865;Name=NDY25_17865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17865 CP098604.1 Protein Homology CDS 4174264 4175271 . - 0 ID=cds-UUF01758.1;Parent=gene-NDY25_17865;Dbxref=NCBI_GP:UUF01758.1;Name=UUF01758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116322.1;locus_tag=NDY25_17865;product=MBL fold metallo-hydrolase;protein_id=UUF01758.1;transl_table=11 CP098604.1 Genbank gene 4175360 4175764 . - . ID=gene-NDY25_17870;Name=NDY25_17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17870 CP098604.1 Protein Homology CDS 4175360 4175764 . - 0 ID=cds-UUF01759.1;Parent=gene-NDY25_17870;Dbxref=NCBI_GP:UUF01759.1;Name=UUF01759.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449229.1;locus_tag=NDY25_17870;product=hypothetical protein;protein_id=UUF01759.1;transl_table=11 CP098604.1 Genbank gene 4175892 4177289 . - . ID=gene-NDY25_17875;Name=NDY25_17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17875 CP098604.1 Protein Homology CDS 4175892 4177289 . - 0 ID=cds-UUF01760.1;Parent=gene-NDY25_17875;Dbxref=NCBI_GP:UUF01760.1;Name=UUF01760.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002807981.1;locus_tag=NDY25_17875;product=trypsin-like peptidase domain-containing protein;protein_id=UUF01760.1;transl_table=11 CP098604.1 Genbank gene 4177752 4179137 . - . ID=gene-NDY25_17880;Name=NDY25_17880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17880 CP098604.1 Protein Homology CDS 4177752 4179137 . - 0 ID=cds-UUF01761.1;Parent=gene-NDY25_17880;Dbxref=NCBI_GP:UUF01761.1;Name=UUF01761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157822.1;locus_tag=NDY25_17880;product=APC family permease;protein_id=UUF01761.1;transl_table=11 CP098604.1 Genbank gene 4179332 4180096 . + . ID=gene-NDY25_17885;Name=NDY25_17885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17885 CP098604.1 Protein Homology CDS 4179332 4180096 . + 0 ID=cds-UUF01762.1;Parent=gene-NDY25_17885;Dbxref=NCBI_GP:UUF01762.1;Name=UUF01762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964311.1;locus_tag=NDY25_17885;product=LuxR family transcriptional regulator;protein_id=UUF01762.1;transl_table=11 CP098604.1 Genbank gene 4180282 4181223 . + . ID=gene-NDY25_17890;Name=NDY25_17890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17890 CP098604.1 Protein Homology CDS 4180282 4181223 . + 0 ID=cds-UUF01763.1;Parent=gene-NDY25_17890;Dbxref=NCBI_GP:UUF01763.1;Name=UUF01763.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437774.1;locus_tag=NDY25_17890;product=proline iminopeptidase-family hydrolase;protein_id=UUF01763.1;transl_table=11 CP098604.1 Genbank gene 4181830 4182891 . + . ID=gene-NDY25_17895;Name=NDY25_17895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17895 CP098604.1 Protein Homology CDS 4181830 4182891 . + 0 ID=cds-UUF01764.1;Parent=gene-NDY25_17895;Dbxref=NCBI_GP:UUF01764.1;Name=UUF01764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904208.1;locus_tag=NDY25_17895;product=pectate lyase;protein_id=UUF01764.1;transl_table=11 CP098604.1 Genbank gene 4183169 4184557 . + . ID=gene-NDY25_17900;Name=NDY25_17900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17900 CP098604.1 Protein Homology CDS 4183169 4184557 . + 0 ID=cds-UUF01765.1;Parent=gene-NDY25_17900;Dbxref=NCBI_GP:UUF01765.1;Name=UUF01765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508483.1;locus_tag=NDY25_17900;product=amino acid permease;protein_id=UUF01765.1;transl_table=11 CP098604.1 Genbank gene 4184893 4186122 . + . ID=gene-NDY25_17905;Name=NDY25_17905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17905 CP098604.1 Protein Homology CDS 4184893 4186122 . + 0 ID=cds-UUF01766.1;Parent=gene-NDY25_17905;Dbxref=NCBI_GP:UUF01766.1;Name=UUF01766.1;Ontology_term=GO:0006508,GO:0070573;gbkey=CDS;go_function=metallodipeptidase activity|0070573||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158987.1;locus_tag=NDY25_17905;product=membrane dipeptidase;protein_id=UUF01766.1;transl_table=11 CP098604.1 Genbank gene 4186564 4187961 . + . ID=gene-NDY25_17910;Name=NDY25_17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17910 CP098604.1 Protein Homology CDS 4186564 4187961 . + 0 ID=cds-UUF01767.1;Parent=gene-NDY25_17910;Dbxref=NCBI_GP:UUF01767.1;Name=UUF01767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237439.1;locus_tag=NDY25_17910;product=cytochrome ubiquinol oxidase subunit I;protein_id=UUF01767.1;transl_table=11 CP098604.1 Genbank gene 4187961 4188977 . + . ID=gene-NDY25_17915;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=NDY25_17915 CP098604.1 Protein Homology CDS 4187961 4188977 . + 0 ID=cds-UUF01768.1;Parent=gene-NDY25_17915;Dbxref=NCBI_GP:UUF01768.1;Name=UUF01768.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051953.1;locus_tag=NDY25_17915;product=cytochrome d ubiquinol oxidase subunit II;protein_id=UUF01768.1;transl_table=11 CP098604.1 Genbank gene 4189015 4189875 . - . ID=gene-NDY25_17920;Name=NDY25_17920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17920 CP098604.1 Protein Homology CDS 4189015 4189875 . - 0 ID=cds-UUF01769.1;Parent=gene-NDY25_17920;Dbxref=NCBI_GP:UUF01769.1;Name=UUF01769.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451263.1;locus_tag=NDY25_17920;product=prolyl oligopeptidase family serine peptidase;protein_id=UUF01769.1;transl_table=11 CP098604.1 Genbank gene 4189930 4191291 . - . ID=gene-NDY25_17925;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=NDY25_17925 CP098604.1 Protein Homology CDS 4189930 4191291 . - 0 ID=cds-UUF01770.1;Parent=gene-NDY25_17925;Dbxref=NCBI_GP:UUF01770.1;Name=UUF01770.1;Ontology_term=GO:0015693,GO:0015095;gbkey=CDS;gene=mgtE;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502484.1;locus_tag=NDY25_17925;product=magnesium transporter;protein_id=UUF01770.1;transl_table=11 CP098604.1 Genbank gene 4191586 4193316 . - . ID=gene-NDY25_17930;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=NDY25_17930 CP098604.1 Protein Homology CDS 4191586 4193316 . - 0 ID=cds-UUF01771.1;Parent=gene-NDY25_17930;Dbxref=NCBI_GP:UUF01771.1;Name=UUF01771.1;Ontology_term=GO:0006808,GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=regulation of nitrogen utilization|0006808||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154796.1;locus_tag=NDY25_17930;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=UUF01771.1;transl_table=11 CP098604.1 Genbank gene 4193375 4193644 . - . ID=gene-NDY25_17935;Name=NDY25_17935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17935 CP098604.1 Protein Homology CDS 4193375 4193644 . - 0 ID=cds-UUF01772.1;Parent=gene-NDY25_17935;Dbxref=NCBI_GP:UUF01772.1;Name=UUF01772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237443.1;locus_tag=NDY25_17935;product=HPr family phosphocarrier protein;protein_id=UUF01772.1;transl_table=11 CP098604.1 Genbank gene 4193637 4194029 . - . ID=gene-NDY25_17940;Name=NDY25_17940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17940 CP098604.1 Protein Homology CDS 4193637 4194029 . - 0 ID=cds-UUF01773.1;Parent=gene-NDY25_17940;Dbxref=NCBI_GP:UUF01773.1;Name=UUF01773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154797.1;locus_tag=NDY25_17940;product=PTS fructose IIA subunit family protein;protein_id=UUF01773.1;transl_table=11 CP098604.1 Genbank gene 4194280 4195152 . - . ID=gene-NDY25_17945;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=NDY25_17945 CP098604.1 Protein Homology CDS 4194280 4195152 . - 0 ID=cds-UUF01774.1;Parent=gene-NDY25_17945;Dbxref=NCBI_GP:UUF01774.1;Name=UUF01774.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993216.1;locus_tag=NDY25_17945;product=RNase adapter RapZ;protein_id=UUF01774.1;transl_table=11 CP098604.1 Genbank gene 4195149 4196099 . - . ID=gene-NDY25_17950;Name=hprK;gbkey=Gene;gene=hprK;gene_biotype=protein_coding;locus_tag=NDY25_17950 CP098604.1 Protein Homology CDS 4195149 4196099 . - 0 ID=cds-UUF01775.1;Parent=gene-NDY25_17950;Dbxref=NCBI_GP:UUF01775.1;Name=UUF01775.1;Ontology_term=GO:0009401,GO:0004674,GO:0016791;gbkey=CDS;gene=hprK;go_function=protein serine/threonine kinase activity|0004674||IEA,phosphatase activity|0016791||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004425835.1;locus_tag=NDY25_17950;product=HPr(Ser) kinase/phosphatase;protein_id=UUF01775.1;transl_table=11 CP098604.1 Genbank gene 4196096 4196554 . - . ID=gene-NDY25_17955;Name=NDY25_17955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17955 CP098604.1 Protein Homology CDS 4196096 4196554 . - 0 ID=cds-UUF01776.1;Parent=gene-NDY25_17955;Dbxref=NCBI_GP:UUF01776.1;Name=UUF01776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944116.1;locus_tag=NDY25_17955;product=PTS sugar transporter subunit IIA;protein_id=UUF01776.1;transl_table=11 CP098604.1 Genbank gene 4196576 4196893 . - . ID=gene-NDY25_17960;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=NDY25_17960 CP098604.1 Protein Homology CDS 4196576 4196893 . - 0 ID=cds-UUF01777.1;Parent=gene-NDY25_17960;Dbxref=NCBI_GP:UUF01777.1;Name=UUF01777.1;Ontology_term=GO:0009386,GO:0045182,GO:0005840,GO:0022626;gbkey=CDS;gene=raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome|0022626||IEA;go_function=translation regulator activity|0045182||IEA;go_process=translational attenuation|0009386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913379.1;locus_tag=NDY25_17960;product=ribosome-associated translation inhibitor RaiA;protein_id=UUF01777.1;transl_table=11 CP098604.1 Genbank gene 4196981 4198378 . - . ID=gene-NDY25_17965;Name=NDY25_17965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17965 CP098604.1 Protein Homology CDS 4196981 4198378 . - 0 ID=cds-UUF01778.1;Parent=gene-NDY25_17965;Dbxref=NCBI_GP:UUF01778.1;Name=UUF01778.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161722.1;locus_tag=NDY25_17965;product=RNA polymerase factor sigma-54;protein_id=UUF01778.1;transl_table=11 CP098604.1 Genbank gene 4198461 4199180 . - . ID=gene-NDY25_17970;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=NDY25_17970 CP098604.1 Protein Homology CDS 4198461 4199180 . - 0 ID=cds-UUF01779.1;Parent=gene-NDY25_17970;Dbxref=NCBI_GP:UUF01779.1;Name=UUF01779.1;Ontology_term=GO:0015920,GO:0015221,GO:0042626,GO:0009898,GO:0043190;gbkey=CDS;gene=lptB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913374.1;locus_tag=NDY25_17970;product=LPS export ABC transporter ATP-binding protein;protein_id=UUF01779.1;transl_table=11 CP098604.1 Genbank gene 4199180 4199740 . - . ID=gene-NDY25_17975;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=NDY25_17975 CP098604.1 Protein Homology CDS 4199180 4199740 . - 0 ID=cds-UUF01780.1;Parent=gene-NDY25_17975;Dbxref=NCBI_GP:UUF01780.1;Name=UUF01780.1;Ontology_term=GO:0015920,GO:0001530,GO:0030288,GO:0043190;gbkey=CDS;gene=lptA;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide binding|0001530||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157712.1;locus_tag=NDY25_17975;product=lipopolysaccharide transport periplasmic protein LptA;protein_id=UUF01780.1;transl_table=11 CP098604.1 Genbank gene 4199718 4200293 . - . ID=gene-NDY25_17980;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=NDY25_17980 CP098604.1 Protein Homology CDS 4199718 4200293 . - 0 ID=cds-UUF01781.1;Parent=gene-NDY25_17980;Dbxref=NCBI_GP:UUF01781.1;Name=UUF01781.1;Ontology_term=GO:0015920,GO:0015221,GO:0005886;gbkey=CDS;gene=lptC;go_component=plasma membrane|0005886||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301638.1;locus_tag=NDY25_17980;product=LPS export ABC transporter periplasmic protein LptC;protein_id=UUF01781.1;transl_table=11 CP098604.1 Genbank gene 4200290 4200838 . - . ID=gene-NDY25_17985;Name=NDY25_17985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17985 CP098604.1 Protein Homology CDS 4200290 4200838 . - 0 ID=cds-UUF01782.1;Parent=gene-NDY25_17985;Dbxref=NCBI_GP:UUF01782.1;Name=UUF01782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011407889.1;locus_tag=NDY25_17985;product=HAD hydrolase family protein;protein_id=UUF01782.1;transl_table=11 CP098604.1 Genbank gene 4200887 4201888 . - . ID=gene-NDY25_17990;Name=NDY25_17990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17990 CP098604.1 Protein Homology CDS 4200887 4201888 . - 0 ID=cds-UUF01783.1;Parent=gene-NDY25_17990;Dbxref=NCBI_GP:UUF01783.1;Name=UUF01783.1;Ontology_term=GO:0005975,GO:0016853;gbkey=CDS;go_function=isomerase activity|0016853||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993233.1;locus_tag=NDY25_17990;product=KpsF/GutQ family sugar-phosphate isomerase;protein_id=UUF01783.1;transl_table=11 CP098604.1 Genbank gene 4201942 4202169 . + . ID=gene-NDY25_17995;Name=NDY25_17995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_17995 CP098604.1 Protein Homology CDS 4201942 4202169 . + 0 ID=cds-UUF01784.1;Parent=gene-NDY25_17995;Dbxref=NCBI_GP:UUF01784.1;Name=UUF01784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016905061.1;locus_tag=NDY25_17995;product=BolA family transcriptional regulator;protein_id=UUF01784.1;transl_table=11 CP098604.1 Genbank gene 4202288 4203562 . + . ID=gene-NDY25_18000;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=NDY25_18000 CP098604.1 Protein Homology CDS 4202288 4203562 . + 0 ID=cds-UUF01785.1;Parent=gene-NDY25_18000;Dbxref=NCBI_GP:UUF01785.1;Name=UUF01785.1;Ontology_term=GO:0009252,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437778.1;locus_tag=NDY25_18000;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=UUF01785.1;transl_table=11 CP098604.1 Genbank gene 4203559 4203882 . + . ID=gene-NDY25_18005;Name=NDY25_18005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18005 CP098604.1 Protein Homology CDS 4203559 4203882 . + 0 ID=cds-UUF01786.1;Parent=gene-NDY25_18005;Dbxref=NCBI_GP:UUF01786.1;Name=UUF01786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348142.1;locus_tag=NDY25_18005;product=EF-hand domain-containing protein;protein_id=UUF01786.1;transl_table=11 CP098604.1 Genbank gene 4204448 4205131 . - . ID=gene-NDY25_18010;Name=NDY25_18010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18010 CP098604.1 Protein Homology CDS 4204448 4205131 . - 0 ID=cds-UUF01787.1;Parent=gene-NDY25_18010;Dbxref=NCBI_GP:UUF01787.1;Name=UUF01787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168434.1;locus_tag=NDY25_18010;product=DUF3108 domain-containing protein;protein_id=UUF01787.1;transl_table=11 CP098604.1 Genbank gene 4205135 4205971 . - . ID=gene-NDY25_18015;Name=NDY25_18015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18015 CP098604.1 Protein Homology CDS 4205135 4205971 . - 0 ID=cds-UUF01788.1;Parent=gene-NDY25_18015;Dbxref=NCBI_GP:UUF01788.1;Name=UUF01788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158355.1;locus_tag=NDY25_18015;product=DUF3108 domain-containing protein;protein_id=UUF01788.1;transl_table=11 CP098604.1 Genbank gene 4206038 4206706 . - . ID=gene-NDY25_18020;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=NDY25_18020 CP098604.1 Protein Homology CDS 4206038 4206706 . - 0 ID=cds-UUF01789.1;Parent=gene-NDY25_18020;Dbxref=NCBI_GP:UUF01789.1;Name=UUF01789.1;Ontology_term=GO:0009152,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487817.1;locus_tag=NDY25_18020;product=phosphoribosylglycinamide formyltransferase;protein_id=UUF01789.1;transl_table=11 CP098604.1 Genbank gene 4206693 4207310 . - . ID=gene-NDY25_18025;Name=NDY25_18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18025 CP098604.1 Protein Homology CDS 4206693 4207310 . - 0 ID=cds-UUF01790.1;Parent=gene-NDY25_18025;Dbxref=NCBI_GP:UUF01790.1;Name=UUF01790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157703.1;locus_tag=NDY25_18025;product=DUF2238 domain-containing protein;protein_id=UUF01790.1;transl_table=11 CP098604.1 Genbank gene 4207324 4208457 . - . ID=gene-NDY25_18030;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=NDY25_18030 CP098604.1 Protein Homology CDS 4207324 4208457 . - 0 ID=cds-UUF01791.1;Parent=gene-NDY25_18030;Dbxref=NCBI_GP:UUF01791.1;Name=UUF01791.1;Ontology_term=GO:0006189,GO:0009152,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850074.1;locus_tag=NDY25_18030;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=UUF01791.1;transl_table=11 CP098604.1 Genbank gene 4208480 4209592 . + . ID=gene-NDY25_18035;Name=NDY25_18035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18035 CP098604.1 Protein Homology CDS 4208480 4209592 . + 0 ID=cds-UUF01792.1;Parent=gene-NDY25_18035;Dbxref=NCBI_GP:UUF01792.1;Name=UUF01792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970596.1;locus_tag=NDY25_18035;product=DUF2066 domain-containing protein;protein_id=UUF01792.1;transl_table=11 CP098604.1 Genbank gene 4209589 4210758 . + . ID=gene-NDY25_18040;Name=NDY25_18040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18040 CP098604.1 Protein Homology CDS 4209589 4210758 . + 0 ID=cds-UUF01793.1;Parent=gene-NDY25_18040;Dbxref=NCBI_GP:UUF01793.1;Name=UUF01793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157699.1;locus_tag=NDY25_18040;product=AI-2E family transporter;protein_id=UUF01793.1;transl_table=11 CP098604.1 Genbank gene 4210755 4211456 . + . ID=gene-NDY25_18045;Name=hda;gbkey=Gene;gene=hda;gene_biotype=protein_coding;locus_tag=NDY25_18045 CP098604.1 Protein Homology CDS 4210755 4211456 . + 0 ID=cds-UUF01794.1;Parent=gene-NDY25_18045;Dbxref=NCBI_GP:UUF01794.1;Name=UUF01794.1;Ontology_term=GO:0032297,GO:0016818;gbkey=CDS;gene=hda;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010369247.1;locus_tag=NDY25_18045;product=DnaA regulatory inactivator Hda;protein_id=UUF01794.1;transl_table=11 CP098604.1 Genbank pseudogene 4211770 4211960 . + . ID=gene-NDY25_18050;Name=NDY25_18050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18050;pseudo=true CP098604.1 Protein Homology CDS 4211770 4211960 . + 0 ID=cds-NDY25_18050;Parent=gene-NDY25_18050;Note=frameshifted%3B internal stop%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158623.1;locus_tag=NDY25_18050;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4211957 4212720 . - . ID=gene-NDY25_18055;Name=NDY25_18055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18055 CP098604.1 Protein Homology CDS 4212405 4212720 . - 0 ID=cds-UUF04711.1;Parent=gene-NDY25_18055;Dbxref=NCBI_GP:UUF04711.1;Name=UUF04711.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_18055;product=IS5 family transposase;protein_id=UUF04711.1;transl_table=11 CP098604.1 Protein Homology CDS 4211957 4212405 . - 2 ID=cds-UUF04711.1;Parent=gene-NDY25_18055;Dbxref=NCBI_GP:UUF04711.1;Name=UUF04711.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_18055;product=IS5 family transposase;protein_id=UUF04711.1;transl_table=11 CP098604.1 Genbank gene 4212763 4213248 . - . ID=gene-NDY25_18060;Name=NDY25_18060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18060 CP098604.1 Protein Homology CDS 4212763 4213248 . - 0 ID=cds-UUF01795.1;Parent=gene-NDY25_18060;Dbxref=NCBI_GP:UUF01795.1;Name=UUF01795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155733.1;locus_tag=NDY25_18060;product=DUF456 domain-containing protein;protein_id=UUF01795.1;transl_table=11 CP098604.1 Genbank gene 4213476 4213691 . + . ID=gene-NDY25_18065;Name=NDY25_18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18065 CP098604.1 Protein Homology CDS 4213476 4213691 . + 0 ID=cds-UUF01796.1;Parent=gene-NDY25_18065;Dbxref=NCBI_GP:UUF01796.1;Name=UUF01796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483561.1;locus_tag=NDY25_18065;product=cold-shock protein;protein_id=UUF01796.1;transl_table=11 CP098604.1 Genbank gene 4213780 4214259 . - . ID=gene-NDY25_18070;Name=NDY25_18070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18070 CP098604.1 Protein Homology CDS 4213780 4214259 . - 0 ID=cds-UUF01797.1;Parent=gene-NDY25_18070;Dbxref=NCBI_GP:UUF01797.1;Name=UUF01797.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303254.1;locus_tag=NDY25_18070;product=glycine zipper 2TM domain-containing protein;protein_id=UUF01797.1;transl_table=11 CP098604.1 Genbank gene 4214381 4214809 . - . ID=gene-NDY25_18075;Name=NDY25_18075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18075 CP098604.1 Protein Homology CDS 4214381 4214809 . - 0 ID=cds-UUF01798.1;Parent=gene-NDY25_18075;Dbxref=NCBI_GP:UUF01798.1;Name=UUF01798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966688.1;locus_tag=NDY25_18075;product=hypothetical protein;protein_id=UUF01798.1;transl_table=11 CP098604.1 Genbank gene 4214886 4215722 . + . ID=gene-NDY25_18080;Name=NDY25_18080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18080 CP098604.1 Protein Homology CDS 4214886 4215722 . + 0 ID=cds-UUF01799.1;Parent=gene-NDY25_18080;Dbxref=NCBI_GP:UUF01799.1;Name=UUF01799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036615.1;locus_tag=NDY25_18080;product=tRNA threonylcarbamoyladenosine dehydratase;protein_id=UUF01799.1;transl_table=11 CP098604.1 Genbank gene 4215759 4216541 . - . ID=gene-NDY25_18085;Name=NDY25_18085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18085 CP098604.1 Protein Homology CDS 4215759 4216541 . - 0 ID=cds-UUF01800.1;Parent=gene-NDY25_18085;Dbxref=NCBI_GP:UUF01800.1;Name=UUF01800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451919.1;locus_tag=NDY25_18085;product=TatD family hydrolase;protein_id=UUF01800.1;transl_table=11 CP098604.1 Genbank gene 4216541 4216756 . - . ID=gene-NDY25_18090;Name=NDY25_18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18090 CP098604.1 Protein Homology CDS 4216541 4216756 . - 0 ID=cds-UUF01801.1;Parent=gene-NDY25_18090;Dbxref=NCBI_GP:UUF01801.1;Name=UUF01801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902710.1;locus_tag=NDY25_18090;product=hypothetical protein;protein_id=UUF01801.1;transl_table=11 CP098604.1 Genbank gene 4216902 4217693 . + . ID=gene-NDY25_18095;Name=NDY25_18095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18095 CP098604.1 Protein Homology CDS 4216902 4217693 . + 0 ID=cds-UUF01802.1;Parent=gene-NDY25_18095;Dbxref=NCBI_GP:UUF01802.1;Name=UUF01802.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017161798.1;locus_tag=NDY25_18095;product=glycine zipper 2TM domain-containing protein;protein_id=UUF01802.1;transl_table=11 CP098604.1 Genbank gene 4217866 4219041 . + . ID=gene-NDY25_18100;Name=NDY25_18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18100 CP098604.1 Protein Homology CDS 4217866 4219041 . + 0 ID=cds-UUF01803.1;Parent=gene-NDY25_18100;Dbxref=NCBI_GP:UUF01803.1;Name=UUF01803.1;Ontology_term=GO:0016627,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005988347.1;locus_tag=NDY25_18100;product=acyl-CoA dehydrogenase family protein;protein_id=UUF01803.1;transl_table=11 CP098604.1 Genbank gene 4219100 4221667 . + . ID=gene-NDY25_18105;Name=NDY25_18105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18105 CP098604.1 Protein Homology CDS 4219100 4221667 . + 0 ID=cds-UUF04712.1;Parent=gene-NDY25_18105;Dbxref=NCBI_GP:UUF04712.1;Name=UUF04712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451923.1;locus_tag=NDY25_18105;product=DUF3857 and transglutaminase domain-containing protein;protein_id=UUF04712.1;transl_table=11 CP098604.1 Genbank gene 4221934 4222578 . + . ID=gene-NDY25_18110;Name=NDY25_18110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18110 CP098604.1 Protein Homology CDS 4221934 4222578 . + 0 ID=cds-UUF01804.1;Parent=gene-NDY25_18110;Dbxref=NCBI_GP:UUF01804.1;Name=UUF01804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902714.1;locus_tag=NDY25_18110;product=glutathione S-transferase family protein;protein_id=UUF01804.1;transl_table=11 CP098604.1 Genbank gene 4222619 4224559 . + . ID=gene-NDY25_18115;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=NDY25_18115 CP098604.1 Protein Homology CDS 4222619 4224559 . + 0 ID=cds-UUF01805.1;Parent=gene-NDY25_18115;Dbxref=NCBI_GP:UUF01805.1;Name=UUF01805.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089787.1;locus_tag=NDY25_18115;product=asparagine synthase (glutamine-hydrolyzing);protein_id=UUF01805.1;transl_table=11 CP098604.1 Genbank gene 4224818 4225372 . + . ID=gene-NDY25_18120;Name=NDY25_18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18120 CP098604.1 Protein Homology CDS 4224818 4225372 . + 0 ID=cds-UUF01806.1;Parent=gene-NDY25_18120;Dbxref=NCBI_GP:UUF01806.1;Name=UUF01806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972091.1;locus_tag=NDY25_18120;product=NAD(P)H-dependent oxidoreductase;protein_id=UUF01806.1;transl_table=11 CP098604.1 Genbank gene 4225592 4227022 . + . ID=gene-NDY25_18125;Name=NDY25_18125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18125 CP098604.1 Protein Homology CDS 4225592 4227022 . + 0 ID=cds-UUF01807.1;Parent=gene-NDY25_18125;Dbxref=NCBI_GP:UUF01807.1;Name=UUF01807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006377195.1;locus_tag=NDY25_18125;product=replicative DNA helicase;protein_id=UUF01807.1;transl_table=11 CP098604.1 Genbank gene 4227754 4229172 . + . ID=gene-NDY25_18130;Name=NDY25_18130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18130 CP098604.1 Protein Homology CDS 4227754 4229172 . + 0 ID=cds-UUF01808.1;Parent=gene-NDY25_18130;Dbxref=NCBI_GP:UUF01808.1;Name=UUF01808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902718.1;locus_tag=NDY25_18130;product=DNA photolyase family protein;protein_id=UUF01808.1;transl_table=11 CP098604.1 Genbank gene 4229307 4230032 . + . ID=gene-NDY25_18135;Name=NDY25_18135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18135 CP098604.1 Protein Homology CDS 4229307 4230032 . + 0 ID=cds-UUF01809.1;Parent=gene-NDY25_18135;Dbxref=NCBI_GP:UUF01809.1;Name=UUF01809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155745.1;locus_tag=NDY25_18135;product=OmpA family protein;protein_id=UUF01809.1;transl_table=11 CP098604.1 Genbank gene 4231018 4232052 . - . ID=gene-NDY25_18140;Name=NDY25_18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18140 CP098604.1 Protein Homology CDS 4231018 4232052 . - 0 ID=cds-UUF01810.1;Parent=gene-NDY25_18140;Dbxref=NCBI_GP:UUF01810.1;Name=UUF01810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155746.1;locus_tag=NDY25_18140;product=LysR family transcriptional regulator;protein_id=UUF01810.1;transl_table=11 CP098604.1 Genbank gene 4232182 4232409 . + . ID=gene-NDY25_18145;Name=NDY25_18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18145 CP098604.1 Protein Homology CDS 4232182 4232409 . + 0 ID=cds-UUF01811.1;Parent=gene-NDY25_18145;Dbxref=NCBI_GP:UUF01811.1;Name=UUF01811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163298.1;locus_tag=NDY25_18145;product=hypothetical protein;protein_id=UUF01811.1;transl_table=11 CP098604.1 Genbank gene 4232406 4233173 . + . ID=gene-NDY25_18150;Name=NDY25_18150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18150 CP098604.1 Protein Homology CDS 4232406 4233173 . + 0 ID=cds-UUF01812.1;Parent=gene-NDY25_18150;Dbxref=NCBI_GP:UUF01812.1;Name=UUF01812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089791.1;locus_tag=NDY25_18150;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=UUF01812.1;transl_table=11 CP098604.1 Genbank gene 4233170 4234360 . + . ID=gene-NDY25_18155;Name=NDY25_18155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18155 CP098604.1 Protein Homology CDS 4233170 4234360 . + 0 ID=cds-UUF01813.1;Parent=gene-NDY25_18155;Dbxref=NCBI_GP:UUF01813.1;Name=UUF01813.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036629.1;locus_tag=NDY25_18155;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF01813.1;transl_table=11 CP098604.1 Genbank gene 4234539 4237712 . + . ID=gene-NDY25_18160;Name=NDY25_18160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18160 CP098604.1 Protein Homology CDS 4234539 4237712 . + 0 ID=cds-UUF01814.1;Parent=gene-NDY25_18160;Dbxref=NCBI_GP:UUF01814.1;Name=UUF01814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944196.1;locus_tag=NDY25_18160;product=efflux RND transporter permease subunit;protein_id=UUF01814.1;transl_table=11 CP098604.1 Genbank gene 4237751 4238482 . + . ID=gene-NDY25_18165;Name=NDY25_18165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18165 CP098604.1 Protein Homology CDS 4237751 4238482 . + 0 ID=cds-UUF01815.1;Parent=gene-NDY25_18165;Dbxref=NCBI_GP:UUF01815.1;Name=UUF01815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003483598.1;locus_tag=NDY25_18165;product=SDR family oxidoreductase;protein_id=UUF01815.1;transl_table=11 CP098604.1 Genbank gene 4238476 4239900 . + . ID=gene-NDY25_18170;Name=NDY25_18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18170 CP098604.1 Protein Homology CDS 4238476 4239900 . + 0 ID=cds-UUF01816.1;Parent=gene-NDY25_18170;Dbxref=NCBI_GP:UUF01816.1;Name=UUF01816.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159387.1;locus_tag=NDY25_18170;product=efflux transporter outer membrane subunit;protein_id=UUF01816.1;transl_table=11 CP098604.1 Genbank gene 4239946 4240920 . - . ID=gene-NDY25_18175;Name=NDY25_18175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18175 CP098604.1 Protein Homology CDS 4239946 4240920 . - 0 ID=cds-UUF01817.1;Parent=gene-NDY25_18175;Dbxref=NCBI_GP:UUF01817.1;Name=UUF01817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503843.1;locus_tag=NDY25_18175;product=GGDEF domain-containing protein;protein_id=UUF01817.1;transl_table=11 CP098604.1 Genbank gene 4241014 4241319 . + . ID=gene-NDY25_18180;Name=NDY25_18180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18180 CP098604.1 Protein Homology CDS 4241014 4241319 . + 0 ID=cds-UUF01818.1;Parent=gene-NDY25_18180;Dbxref=NCBI_GP:UUF01818.1;Name=UUF01818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155753.1;locus_tag=NDY25_18180;product=hypothetical protein;protein_id=UUF01818.1;transl_table=11 CP098604.1 Genbank gene 4241443 4243143 . - . ID=gene-NDY25_18185;Name=NDY25_18185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18185 CP098604.1 Protein Homology CDS 4241443 4243143 . - 0 ID=cds-UUF01819.1;Parent=gene-NDY25_18185;Dbxref=NCBI_GP:UUF01819.1;Name=UUF01819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050947.1;locus_tag=NDY25_18185;product=GGDEF domain-containing protein;protein_id=UUF01819.1;transl_table=11 CP098604.1 Genbank gene 4243482 4243652 . + . ID=gene-NDY25_18190;Name=NDY25_18190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18190 CP098604.1 Protein Homology CDS 4243482 4243652 . + 0 ID=cds-UUF01820.1;Parent=gene-NDY25_18190;Dbxref=NCBI_GP:UUF01820.1;Name=UUF01820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449450.1;locus_tag=NDY25_18190;product=hypothetical protein;protein_id=UUF01820.1;transl_table=11 CP098604.1 Genbank gene 4243907 4244191 . - . ID=gene-NDY25_18195;Name=NDY25_18195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18195 CP098604.1 Protein Homology CDS 4243907 4244191 . - 0 ID=cds-UUF01821.1;Parent=gene-NDY25_18195;Dbxref=NCBI_GP:UUF01821.1;Name=UUF01821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050951.1;locus_tag=NDY25_18195;product=hypothetical protein;protein_id=UUF01821.1;transl_table=11 CP098604.1 Genbank gene 4244320 4244490 . - . ID=gene-NDY25_18200;Name=NDY25_18200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18200 CP098604.1 Protein Homology CDS 4244320 4244490 . - 0 ID=cds-UUF01822.1;Parent=gene-NDY25_18200;Dbxref=NCBI_GP:UUF01822.1;Name=UUF01822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463016.1;locus_tag=NDY25_18200;product=hypothetical protein;protein_id=UUF01822.1;transl_table=11 CP098604.1 Genbank gene 4244618 4244947 . + . ID=gene-NDY25_18205;Name=NDY25_18205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18205 CP098604.1 Protein Homology CDS 4244618 4244947 . + 0 ID=cds-UUF01823.1;Parent=gene-NDY25_18205;Dbxref=NCBI_GP:UUF01823.1;Name=UUF01823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050952.1;locus_tag=NDY25_18205;product=helix-turn-helix domain-containing protein;protein_id=UUF01823.1;transl_table=11 CP098604.1 Genbank gene 4244940 4245767 . + . ID=gene-NDY25_18210;Name=NDY25_18210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18210 CP098604.1 Protein Homology CDS 4244940 4245767 . + 0 ID=cds-UUF01824.1;Parent=gene-NDY25_18210;Dbxref=NCBI_GP:UUF01824.1;Name=UUF01824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050953.1;locus_tag=NDY25_18210;product=ImmA/IrrE family metallo-endopeptidase;protein_id=UUF01824.1;transl_table=11 CP098604.1 Genbank gene 4245999 4246232 . - . ID=gene-NDY25_18215;Name=NDY25_18215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18215 CP098604.1 GeneMarkS-2+ CDS 4245999 4246232 . - 0 ID=cds-UUF01825.1;Parent=gene-NDY25_18215;Dbxref=NCBI_GP:UUF01825.1;Name=UUF01825.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18215;product=hypothetical protein;protein_id=UUF01825.1;transl_table=11 CP098604.1 Genbank gene 4246450 4247412 . + . ID=gene-NDY25_18220;Name=NDY25_18220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18220 CP098604.1 Protein Homology CDS 4246450 4247412 . + 0 ID=cds-UUF01826.1;Parent=gene-NDY25_18220;Dbxref=NCBI_GP:UUF01826.1;Name=UUF01826.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_18220;product=IS1595 family transposase;protein_id=UUF01826.1;transl_table=11 CP098604.1 Genbank gene 4247484 4247888 . + . ID=gene-NDY25_18225;Name=NDY25_18225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18225 CP098604.1 Protein Homology CDS 4247484 4247888 . + 0 ID=cds-UUF01827.1;Parent=gene-NDY25_18225;Dbxref=NCBI_GP:UUF01827.1;Name=UUF01827.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011050954.1;locus_tag=NDY25_18225;product=H-NS histone family protein;protein_id=UUF01827.1;transl_table=11 CP098604.1 Genbank gene 4248342 4249373 . - . ID=gene-NDY25_18230;Name=NDY25_18230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18230 CP098604.1 Protein Homology CDS 4248342 4249373 . - 0 ID=cds-UUF01828.1;Parent=gene-NDY25_18230;Dbxref=NCBI_GP:UUF01828.1;Name=UUF01828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011348379.1;locus_tag=NDY25_18230;product=hypothetical protein;protein_id=UUF01828.1;transl_table=11 CP098604.1 Genbank gene 4249650 4250612 . + . ID=gene-NDY25_18235;Name=NDY25_18235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18235 CP098604.1 Protein Homology CDS 4249650 4250612 . + 0 ID=cds-UUF01829.1;Parent=gene-NDY25_18235;Dbxref=NCBI_GP:UUF01829.1;Name=UUF01829.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_18235;product=IS1595 family transposase;protein_id=UUF01829.1;transl_table=11 CP098604.1 Genbank gene 4251068 4252360 . - . ID=gene-NDY25_18240;Name=NDY25_18240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18240 CP098604.1 Protein Homology CDS 4251068 4252360 . - 0 ID=cds-UUF01830.1;Parent=gene-NDY25_18240;Dbxref=NCBI_GP:UUF01830.1;Name=UUF01830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806239.1;locus_tag=NDY25_18240;product=M12 family metallo-peptidase;protein_id=UUF01830.1;transl_table=11 CP098604.1 Genbank gene 4252670 4253632 . - . ID=gene-NDY25_18245;Name=NDY25_18245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18245 CP098604.1 Protein Homology CDS 4252670 4253632 . - 0 ID=cds-UUF01831.1;Parent=gene-NDY25_18245;Dbxref=NCBI_GP:UUF01831.1;Name=UUF01831.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037261.1;locus_tag=NDY25_18245;product=IS1595 family transposase;protein_id=UUF01831.1;transl_table=11 CP098604.1 Genbank pseudogene 4254257 4255133 . - . ID=gene-NDY25_18250;Name=NDY25_18250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18250;pseudo=true CP098604.1 Protein Homology CDS 4254257 4255133 . - 0 ID=cds-NDY25_18250;Parent=gene-NDY25_18250;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_18250;product=IS3 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4255556 4255834 . - . ID=gene-NDY25_18255;Name=NDY25_18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18255 CP098604.1 GeneMarkS-2+ CDS 4255556 4255834 . - 0 ID=cds-UUF01832.1;Parent=gene-NDY25_18255;Dbxref=NCBI_GP:UUF01832.1;Name=UUF01832.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18255;product=hypothetical protein;protein_id=UUF01832.1;transl_table=11 CP098604.1 Genbank gene 4256631 4257611 . - . ID=gene-NDY25_18260;Name=NDY25_18260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18260 CP098604.1 Protein Homology CDS 4256631 4257611 . - 0 ID=cds-UUF01833.1;Parent=gene-NDY25_18260;Dbxref=NCBI_GP:UUF01833.1;Name=UUF01833.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_18260;product=IS5 family transposase;protein_id=UUF01833.1;transl_table=11 CP098604.1 Genbank gene 4257796 4258903 . + . ID=gene-NDY25_18265;Name=NDY25_18265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18265 CP098604.1 Protein Homology CDS 4257796 4258052 . + 0 ID=cds-UUF01834.1;Parent=gene-NDY25_18265;Dbxref=NCBI_GP:UUF01834.1;Name=UUF01834.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_18265;product=IS3 family transposase;protein_id=UUF01834.1;transl_table=11 CP098604.1 Protein Homology CDS 4258051 4258903 . + 1 ID=cds-UUF01834.1;Parent=gene-NDY25_18265;Dbxref=NCBI_GP:UUF01834.1;Name=UUF01834.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_18265;product=IS3 family transposase;protein_id=UUF01834.1;transl_table=11 CP098604.1 Genbank pseudogene 4259040 4262595 . - . ID=gene-NDY25_18270;Name=NDY25_18270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18270;pseudo=true CP098604.1 Protein Homology CDS 4259040 4262595 . - 0 ID=cds-NDY25_18270;Parent=gene-NDY25_18270;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162515.1;locus_tag=NDY25_18270;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 4263110 4263750 . - . ID=gene-NDY25_18275;Name=NDY25_18275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18275;pseudo=true CP098604.1 Protein Homology CDS 4263110 4263750 . - 0 ID=cds-NDY25_18275;Parent=gene-NDY25_18275;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472824.1;locus_tag=NDY25_18275;product=DUF1629 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4264525 4264695 . + . ID=gene-NDY25_18280;Name=NDY25_18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18280 CP098604.1 Protein Homology CDS 4264525 4264695 . + 0 ID=cds-UUF01835.1;Parent=gene-NDY25_18280;Dbxref=NCBI_GP:UUF01835.1;Name=UUF01835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450529.1;locus_tag=NDY25_18280;product=hypothetical protein;protein_id=UUF01835.1;transl_table=11 CP098604.1 Genbank gene 4265247 4265789 . - . ID=gene-NDY25_18285;Name=NDY25_18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18285 CP098604.1 Protein Homology CDS 4265247 4265789 . - 0 ID=cds-UUF01836.1;Parent=gene-NDY25_18285;Dbxref=NCBI_GP:UUF01836.1;Name=UUF01836.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371290.1;locus_tag=NDY25_18285;product=GspH/FimT family pseudopilin;protein_id=UUF01836.1;transl_table=11 CP098604.1 Genbank gene 4265930 4267951 . + . ID=gene-NDY25_18290;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=NDY25_18290 CP098604.1 Protein Homology CDS 4265930 4267951 . + 0 ID=cds-UUF01837.1;Parent=gene-NDY25_18290;Dbxref=NCBI_GP:UUF01837.1;Name=UUF01837.1;Ontology_term=GO:0006289,GO:0003677,GO:0005515,GO:0005524,GO:0016787,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037621.1;locus_tag=NDY25_18290;product=excinuclease ABC subunit UvrB;protein_id=UUF01837.1;transl_table=11 CP098604.1 Genbank gene 4268049 4268123 . + . ID=gene-NDY25_18295;Name=NDY25_18295;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_18295 CP098604.1 tRNAscan-SE tRNA 4268049 4268123 . + . ID=rna-NDY25_18295;Parent=gene-NDY25_18295;anticodon=(pos:4268081..4268083);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_18295;product=tRNA-Val CP098604.1 tRNAscan-SE exon 4268049 4268123 . + . ID=exon-NDY25_18295-1;Parent=rna-NDY25_18295;anticodon=(pos:4268081..4268083);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_18295;product=tRNA-Val CP098604.1 Genbank pseudogene 4268314 4268555 . + . ID=gene-NDY25_18300;Name=NDY25_18300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18300;pseudo=true CP098604.1 Protein Homology CDS 4268314 4268555 . + 0 ID=cds-NDY25_18300;Parent=gene-NDY25_18300;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901079.1;locus_tag=NDY25_18300;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4268593 4270266 . + . ID=gene-NDY25_18305;Name=NDY25_18305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18305 CP098604.1 Protein Homology CDS 4268593 4270266 . + 0 ID=cds-UUF01838.1;Parent=gene-NDY25_18305;Dbxref=NCBI_GP:UUF01838.1;Name=UUF01838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347915.1;locus_tag=NDY25_18305;product=type IV secretory system conjugative DNA transfer family protein;protein_id=UUF01838.1;transl_table=11 CP098604.1 Genbank gene 4270617 4271027 . + . ID=gene-NDY25_18310;Name=NDY25_18310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18310 CP098604.1 Protein Homology CDS 4270617 4271027 . + 0 ID=cds-UUF01839.1;Parent=gene-NDY25_18310;Dbxref=NCBI_GP:UUF01839.1;Name=UUF01839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371304.1;locus_tag=NDY25_18310;product=toxin co-regulated pilus biosynthesis Q family protein;protein_id=UUF01839.1;transl_table=11 CP098604.1 Genbank gene 4271153 4272139 . + . ID=gene-NDY25_18315;Name=NDY25_18315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18315 CP098604.1 Protein Homology CDS 4271153 4272139 . + 0 ID=cds-UUF01840.1;Parent=gene-NDY25_18315;Dbxref=NCBI_GP:UUF01840.1;Name=UUF01840.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437991.1;locus_tag=NDY25_18315;product=VirB8/TrbF family protein;protein_id=UUF01840.1;transl_table=11 CP098604.1 Genbank gene 4272136 4272903 . + . ID=gene-NDY25_18320;Name=NDY25_18320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18320 CP098604.1 Protein Homology CDS 4272136 4272903 . + 0 ID=cds-UUF01841.1;Parent=gene-NDY25_18320;Dbxref=NCBI_GP:UUF01841.1;Name=UUF01841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920257.1;locus_tag=NDY25_18320;product=TrbG/VirB9 family P-type conjugative transfer protein;protein_id=UUF01841.1;transl_table=11 CP098604.1 Genbank gene 4273275 4274072 . + . ID=gene-NDY25_18325;Name=NDY25_18325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18325 CP098604.1 Protein Homology CDS 4273275 4274072 . + 0 ID=cds-UUF04713.1;Parent=gene-NDY25_18325;Dbxref=NCBI_GP:UUF04713.1;Name=UUF04713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158328.1;locus_tag=NDY25_18325;product=hypothetical protein;protein_id=UUF04713.1;transl_table=11 CP098604.1 Genbank gene 4274069 4275127 . + . ID=gene-NDY25_18330;Name=virB11;gbkey=Gene;gene=virB11;gene_biotype=protein_coding;locus_tag=NDY25_18330 CP098604.1 Protein Homology CDS 4274069 4275127 . + 0 ID=cds-UUF01842.1;Parent=gene-NDY25_18330;Dbxref=NCBI_GP:UUF01842.1;Name=UUF01842.1;Ontology_term=GO:0044097,GO:0043684;gbkey=CDS;gene=virB11;go_component=type IV secretion system complex|0043684||IEA;go_process=secretion by the type IV secretion system|0044097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437994.1;locus_tag=NDY25_18330;product=P-type DNA transfer ATPase VirB11;protein_id=UUF01842.1;transl_table=11 CP098604.1 Genbank pseudogene 4275184 4275927 . + . ID=gene-NDY25_18335;Name=NDY25_18335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18335;pseudo=true CP098604.1 Protein Homology CDS 4275184 4275927 . + 0 ID=cds-NDY25_18335;Parent=gene-NDY25_18335;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158787.1;locus_tag=NDY25_18335;product=lytic transglycosylase domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4276064 4276468 . + . ID=gene-NDY25_18340;Name=NDY25_18340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18340 CP098604.1 Protein Homology CDS 4276064 4276468 . + 0 ID=cds-UUF01843.1;Parent=gene-NDY25_18340;Dbxref=NCBI_GP:UUF01843.1;Name=UUF01843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437996.1;locus_tag=NDY25_18340;product=TrbC/VirB2 family protein;protein_id=UUF01843.1;transl_table=11 CP098604.1 Genbank gene 4276461 4276772 . + . ID=gene-NDY25_18345;Name=NDY25_18345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18345 CP098604.1 Protein Homology CDS 4276461 4276772 . + 0 ID=cds-UUF01844.1;Parent=gene-NDY25_18345;Dbxref=NCBI_GP:UUF01844.1;Name=UUF01844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901062.1;locus_tag=NDY25_18345;product=VirB3 family type IV secretion system protein;protein_id=UUF01844.1;transl_table=11 CP098604.1 Genbank gene 4276876 4279332 . + . ID=gene-NDY25_18350;Name=NDY25_18350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18350 CP098604.1 Protein Homology CDS 4276876 4279332 . + 0 ID=cds-UUF01845.1;Parent=gene-NDY25_18350;Dbxref=NCBI_GP:UUF01845.1;Name=UUF01845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914226.1;locus_tag=NDY25_18350;product=VirB4 family type IV secretion/conjugal transfer ATPase;protein_id=UUF01845.1;transl_table=11 CP098604.1 Genbank gene 4279507 4279584 . + . ID=gene-NDY25_18355;Name=NDY25_18355;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_18355 CP098604.1 cmsearch ncRNA 4279507 4279584 . + . ID=rna-NDY25_18355;Parent=gene-NDY25_18355;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_18355;product=sX9 sRNA CP098604.1 cmsearch exon 4279507 4279584 . + . ID=exon-NDY25_18355-1;Parent=rna-NDY25_18355;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_18355;product=sX9 sRNA CP098604.1 Genbank gene 4280171 4282075 . + . ID=gene-NDY25_18360;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=NDY25_18360 CP098604.1 Protein Homology CDS 4280171 4282075 . + 0 ID=cds-UUF01846.1;Parent=gene-NDY25_18360;Dbxref=NCBI_GP:UUF01846.1;Name=UUF01846.1;Ontology_term=GO:0006435,GO:0004829,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303507.1;locus_tag=NDY25_18360;product=threonine--tRNA ligase;protein_id=UUF01846.1;transl_table=11 CP098604.1 Genbank gene 4282124 4282666 . + . ID=gene-NDY25_18365;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=NDY25_18365 CP098604.1 Protein Homology CDS 4282124 4282666 . + 0 ID=cds-UUF04714.1;Parent=gene-NDY25_18365;Dbxref=NCBI_GP:UUF04714.1;Name=UUF04714.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660568.1;locus_tag=NDY25_18365;product=translation initiation factor IF-3;protein_id=UUF04714.1;transl_table=11 CP098604.1 Genbank gene 4282907 4283104 . + . ID=gene-NDY25_18370;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=NDY25_18370 CP098604.1 Protein Homology CDS 4282907 4283104 . + 0 ID=cds-UUF01847.1;Parent=gene-NDY25_18370;Dbxref=NCBI_GP:UUF01847.1;Name=UUF01847.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmI;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005410436.1;locus_tag=NDY25_18370;product=50S ribosomal protein L35;protein_id=UUF01847.1;transl_table=11 CP098604.1 Genbank gene 4283115 4283474 . + . ID=gene-NDY25_18375;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=NDY25_18375 CP098604.1 Protein Homology CDS 4283115 4283474 . + 0 ID=cds-UUF01848.1;Parent=gene-NDY25_18375;Dbxref=NCBI_GP:UUF01848.1;Name=UUF01848.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplT;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000124858.1;locus_tag=NDY25_18375;product=50S ribosomal protein L20;protein_id=UUF01848.1;transl_table=11 CP098604.1 Genbank gene 4283759 4284754 . + . ID=gene-NDY25_18380;Name=NDY25_18380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18380 CP098604.1 Protein Homology CDS 4283759 4284754 . + 0 ID=cds-UUF01849.1;Parent=gene-NDY25_18380;Dbxref=NCBI_GP:UUF01849.1;Name=UUF01849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019299936.1;locus_tag=NDY25_18380;product=phenylalanine--tRNA ligase subunit alpha;protein_id=UUF01849.1;transl_table=11 CP098604.1 Genbank gene 4284884 4287262 . + . ID=gene-NDY25_18385;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=NDY25_18385 CP098604.1 Protein Homology CDS 4284884 4287262 . + 0 ID=cds-UUF01850.1;Parent=gene-NDY25_18385;Dbxref=NCBI_GP:UUF01850.1;Name=UUF01850.1;Ontology_term=GO:0006432,GO:0004826,GO:0009328;gbkey=CDS;gene=pheT;go_component=phenylalanine-tRNA ligase complex|0009328||IEA;go_function=phenylalanine-tRNA ligase activity|0004826||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903311.1;locus_tag=NDY25_18385;product=phenylalanine--tRNA ligase subunit beta;protein_id=UUF01850.1;transl_table=11 CP098604.1 Genbank gene 4287284 4287583 . + . ID=gene-NDY25_18390;Name=NDY25_18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18390 CP098604.1 Protein Homology CDS 4287284 4287583 . + 0 ID=cds-UUF01851.1;Parent=gene-NDY25_18390;Dbxref=NCBI_GP:UUF01851.1;Name=UUF01851.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002811076.1;locus_tag=NDY25_18390;product=integration host factor subunit alpha;protein_id=UUF01851.1;transl_table=11 CP098604.1 Genbank gene 4287564 4287920 . + . ID=gene-NDY25_18395;Name=NDY25_18395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18395 CP098604.1 Protein Homology CDS 4287564 4287920 . + 0 ID=cds-UUF01852.1;Parent=gene-NDY25_18395;Dbxref=NCBI_GP:UUF01852.1;Name=UUF01852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019182707.1;locus_tag=NDY25_18395;product=MerR family transcriptional regulator;protein_id=UUF01852.1;transl_table=11 CP098604.1 Genbank gene 4287982 4288058 . + . ID=gene-NDY25_18400;Name=NDY25_18400;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_18400 CP098604.1 tRNAscan-SE tRNA 4287982 4288058 . + . ID=rna-NDY25_18400;Parent=gene-NDY25_18400;anticodon=(pos:4288016..4288018);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_18400;product=tRNA-Pro CP098604.1 tRNAscan-SE exon 4287982 4288058 . + . ID=exon-NDY25_18400-1;Parent=rna-NDY25_18400;anticodon=(pos:4288016..4288018);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_18400;product=tRNA-Pro CP098604.1 Genbank gene 4288531 4289229 . + . ID=gene-NDY25_18405;Name=NDY25_18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18405 CP098604.1 Protein Homology CDS 4288531 4289229 . + 0 ID=cds-UUF01853.1;Parent=gene-NDY25_18405;Dbxref=NCBI_GP:UUF01853.1;Name=UUF01853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112207.1;locus_tag=NDY25_18405;product=polysaccharide export protein;protein_id=UUF01853.1;transl_table=11 CP098604.1 Genbank gene 4289211 4290650 . + . ID=gene-NDY25_18410;Name=NDY25_18410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18410 CP098604.1 Protein Homology CDS 4289211 4290650 . + 0 ID=cds-UUF01854.1;Parent=gene-NDY25_18410;Dbxref=NCBI_GP:UUF01854.1;Name=UUF01854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157116.1;locus_tag=NDY25_18410;product=GumC family protein;protein_id=UUF01854.1;transl_table=11 CP098604.1 Genbank gene 4290894 4292348 . + . ID=gene-NDY25_18415;Name=NDY25_18415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18415 CP098604.1 Protein Homology CDS 4290894 4292348 . + 0 ID=cds-UUF01855.1;Parent=gene-NDY25_18415;Dbxref=NCBI_GP:UUF01855.1;Name=UUF01855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914017.1;locus_tag=NDY25_18415;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=UUF01855.1;transl_table=11 CP098604.1 Genbank gene 4292443 4293729 . + . ID=gene-NDY25_18420;Name=NDY25_18420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18420 CP098604.1 Protein Homology CDS 4292443 4293729 . + 0 ID=cds-UUF04715.1;Parent=gene-NDY25_18420;Dbxref=NCBI_GP:UUF04715.1;Name=UUF04715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117349.1;locus_tag=NDY25_18420;product=polysaccharide biosynthesis protein GumE;protein_id=UUF04715.1;transl_table=11 CP098604.1 Genbank gene 4293726 4294817 . + . ID=gene-NDY25_18425;Name=NDY25_18425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18425 CP098604.1 Protein Homology CDS 4293726 4294817 . + 0 ID=cds-UUF01856.1;Parent=gene-NDY25_18425;Dbxref=NCBI_GP:UUF01856.1;Name=UUF01856.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574566.1;locus_tag=NDY25_18425;product=acyltransferase family protein;protein_id=UUF01856.1;transl_table=11 CP098604.1 Genbank gene 4294831 4295919 . + . ID=gene-NDY25_18430;Name=NDY25_18430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18430 CP098604.1 Protein Homology CDS 4294831 4295919 . + 0 ID=cds-UUF01857.1;Parent=gene-NDY25_18430;Dbxref=NCBI_GP:UUF01857.1;Name=UUF01857.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974718.1;locus_tag=NDY25_18430;product=acyltransferase family protein;protein_id=UUF01857.1;transl_table=11 CP098604.1 Genbank gene 4295987 4297129 . + . ID=gene-NDY25_18435;Name=NDY25_18435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18435 CP098604.1 Protein Homology CDS 4295987 4297129 . + 0 ID=cds-UUF01858.1;Parent=gene-NDY25_18435;Dbxref=NCBI_GP:UUF01858.1;Name=UUF01858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484848.1;locus_tag=NDY25_18435;product=glycosyltransferase family 4 protein;protein_id=UUF01858.1;transl_table=11 CP098604.1 Genbank gene 4297126 4298175 . + . ID=gene-NDY25_18440;Name=NDY25_18440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18440 CP098604.1 Protein Homology CDS 4297126 4298175 . + 0 ID=cds-UUF01859.1;Parent=gene-NDY25_18440;Dbxref=NCBI_GP:UUF01859.1;Name=UUF01859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157110.1;locus_tag=NDY25_18440;product=GDP-mannose--glycolipid 4-beta-D-mannosyltransferase;protein_id=UUF01859.1;transl_table=11 CP098604.1 Genbank gene 4298193 4299677 . + . ID=gene-NDY25_18445;Name=NDY25_18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18445 CP098604.1 Protein Homology CDS 4298193 4299677 . + 0 ID=cds-UUF01860.1;Parent=gene-NDY25_18445;Dbxref=NCBI_GP:UUF01860.1;Name=UUF01860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157109.1;locus_tag=NDY25_18445;product=lipopolysaccharide biosynthesis protein;protein_id=UUF01860.1;transl_table=11 CP098604.1 Genbank gene 4299742 4300941 . + . ID=gene-NDY25_18450;Name=NDY25_18450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18450 CP098604.1 Protein Homology CDS 4299742 4300941 . + 0 ID=cds-UUF01861.1;Parent=gene-NDY25_18450;Dbxref=NCBI_GP:UUF01861.1;Name=UUF01861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363526.1;locus_tag=NDY25_18450;product=glycosyltransferase;protein_id=UUF01861.1;transl_table=11 CP098604.1 Genbank gene 4300982 4301776 . + . ID=gene-NDY25_18455;Name=NDY25_18455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18455 CP098604.1 Protein Homology CDS 4300982 4301776 . + 0 ID=cds-UUF01862.1;Parent=gene-NDY25_18455;Dbxref=NCBI_GP:UUF01862.1;Name=UUF01862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484852.1;locus_tag=NDY25_18455;product=polysaccharide pyruvyl transferase family protein;protein_id=UUF01862.1;transl_table=11 CP098604.1 Genbank gene 4301781 4302575 . + . ID=gene-NDY25_18460;Name=NDY25_18460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18460 CP098604.1 Protein Homology CDS 4301781 4302575 . + 0 ID=cds-UUF01863.1;Parent=gene-NDY25_18460;Dbxref=NCBI_GP:UUF01863.1;Name=UUF01863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157106.1;locus_tag=NDY25_18460;product=WecB/TagA/CpsF family glycosyltransferase;protein_id=UUF01863.1;transl_table=11 CP098604.1 Genbank gene 4302610 4303071 . + . ID=gene-NDY25_18465;Name=NDY25_18465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18465 CP098604.1 Protein Homology CDS 4302610 4303071 . + 0 ID=cds-UUF01864.1;Parent=gene-NDY25_18465;Dbxref=NCBI_GP:UUF01864.1;Name=UUF01864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914032.1;locus_tag=NDY25_18465;product=cupin domain-containing protein;protein_id=UUF01864.1;transl_table=11 CP098604.1 Genbank gene 4303164 4304201 . + . ID=gene-NDY25_18470;Name=NDY25_18470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18470 CP098604.1 Protein Homology CDS 4303164 4304201 . + 0 ID=cds-UUF01865.1;Parent=gene-NDY25_18470;Dbxref=NCBI_GP:UUF01865.1;Name=UUF01865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173582.1;locus_tag=NDY25_18470;product=TraB/GumN family protein;protein_id=UUF01865.1;transl_table=11 CP098604.1 Genbank gene 4304316 4305347 . + . ID=gene-NDY25_18475;Name=NDY25_18475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18475 CP098604.1 Protein Homology CDS 4304316 4305347 . + 0 ID=cds-UUF04716.1;Parent=gene-NDY25_18475;Dbxref=NCBI_GP:UUF04716.1;Name=UUF04716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174298.1;locus_tag=NDY25_18475;product=ketoacyl-ACP synthase III;protein_id=UUF04716.1;transl_table=11 CP098604.1 Genbank gene 4305383 4306231 . + . ID=gene-NDY25_18480;Name=NDY25_18480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18480 CP098604.1 Protein Homology CDS 4305383 4306231 . + 0 ID=cds-UUF01866.1;Parent=gene-NDY25_18480;Dbxref=NCBI_GP:UUF01866.1;Name=UUF01866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157102.1;locus_tag=NDY25_18480;product=MBL fold metallo-hydrolase;protein_id=UUF01866.1;transl_table=11 CP098604.1 Genbank gene 4306228 4307187 . + . ID=gene-NDY25_18485;Name=NDY25_18485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18485 CP098604.1 Protein Homology CDS 4306228 4307187 . + 0 ID=cds-UUF01867.1;Parent=gene-NDY25_18485;Dbxref=NCBI_GP:UUF01867.1;Name=UUF01867.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574543.1;locus_tag=NDY25_18485;product=NAD(P)-dependent oxidoreductase;protein_id=UUF01867.1;transl_table=11 CP098604.1 Genbank pseudogene 4307178 4308331 . + . ID=gene-NDY25_18490;Name=NDY25_18490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18490;pseudo=true CP098604.1 Protein Homology CDS 4307178 4308331 . + 0 ID=cds-NDY25_18490;Parent=gene-NDY25_18490;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378234.1;locus_tag=NDY25_18490;product=glycosyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4308309 4308926 . + . ID=gene-NDY25_18495;Name=NDY25_18495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18495 CP098604.1 Protein Homology CDS 4308309 4308926 . + 0 ID=cds-UUF01868.1;Parent=gene-NDY25_18495;Dbxref=NCBI_GP:UUF01868.1;Name=UUF01868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974702.1;locus_tag=NDY25_18495;product=hypothetical protein;protein_id=UUF01868.1;transl_table=11 CP098604.1 Genbank gene 4308911 4310167 . + . ID=gene-NDY25_18500;Name=NDY25_18500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18500 CP098604.1 Protein Homology CDS 4308911 4310167 . + 0 ID=cds-UUF01869.1;Parent=gene-NDY25_18500;Dbxref=NCBI_GP:UUF01869.1;Name=UUF01869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848791.1;locus_tag=NDY25_18500;product=glycosyl transferase;protein_id=UUF01869.1;transl_table=11 CP098604.1 Genbank gene 4310672 4312588 . - . ID=gene-NDY25_18505;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=NDY25_18505 CP098604.1 Protein Homology CDS 4310672 4312588 . - 0 ID=cds-UUF01870.1;Parent=gene-NDY25_18505;Dbxref=NCBI_GP:UUF01870.1;Name=UUF01870.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037575.1;locus_tag=NDY25_18505;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=UUF01870.1;transl_table=11 CP098604.1 Genbank gene 4312776 4313432 . - . ID=gene-NDY25_18510;Name=NDY25_18510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18510 CP098604.1 Protein Homology CDS 4312776 4313432 . - 0 ID=cds-UUF01871.1;Parent=gene-NDY25_18510;Dbxref=NCBI_GP:UUF01871.1;Name=UUF01871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157096.1;locus_tag=NDY25_18510;product=HNH endonuclease;protein_id=UUF01871.1;transl_table=11 CP098604.1 Genbank gene 4313482 4315275 . - . ID=gene-NDY25_18515;Name=NDY25_18515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18515 CP098604.1 Protein Homology CDS 4313482 4315275 . - 0 ID=cds-UUF01872.1;Parent=gene-NDY25_18515;Dbxref=NCBI_GP:UUF01872.1;Name=UUF01872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378222.1;locus_tag=NDY25_18515;product=acyl-CoA dehydrogenase C-terminal domain-containing protein;protein_id=UUF01872.1;transl_table=11 CP098604.1 Genbank gene 4315313 4315789 . - . ID=gene-NDY25_18520;Name=NDY25_18520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18520 CP098604.1 Protein Homology CDS 4315313 4315789 . - 0 ID=cds-UUF01873.1;Parent=gene-NDY25_18520;Dbxref=NCBI_GP:UUF01873.1;Name=UUF01873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448491.1;locus_tag=NDY25_18520;product=LEA type 2 family protein;protein_id=UUF01873.1;transl_table=11 CP098604.1 Genbank gene 4315897 4316433 . - . ID=gene-NDY25_18525;Name=NDY25_18525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18525 CP098604.1 Protein Homology CDS 4315897 4316433 . - 0 ID=cds-UUF01874.1;Parent=gene-NDY25_18525;Dbxref=NCBI_GP:UUF01874.1;Name=UUF01874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157093.1;locus_tag=NDY25_18525;product=lipocalin family protein;protein_id=UUF01874.1;transl_table=11 CP098604.1 Genbank gene 4316614 4316689 . + . ID=gene-NDY25_18530;Name=NDY25_18530;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_18530 CP098604.1 tRNAscan-SE tRNA 4316614 4316689 . + . ID=rna-NDY25_18530;Parent=gene-NDY25_18530;anticodon=(pos:4316647..4316649);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_18530;product=tRNA-Phe CP098604.1 tRNAscan-SE exon 4316614 4316689 . + . ID=exon-NDY25_18530-1;Parent=rna-NDY25_18530;anticodon=(pos:4316647..4316649);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_18530;product=tRNA-Phe CP098604.1 Genbank gene 4316974 4317240 . + . ID=gene-NDY25_18535;Name=NDY25_18535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18535 CP098604.1 Protein Homology CDS 4316974 4317240 . + 0 ID=cds-UUF04717.1;Parent=gene-NDY25_18535;Dbxref=NCBI_GP:UUF04717.1;Name=UUF04717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090462.1;locus_tag=NDY25_18535;product=hypothetical protein;protein_id=UUF04717.1;transl_table=11 CP098604.1 Genbank gene 4317394 4318005 . + . ID=gene-NDY25_18540;Name=NDY25_18540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18540 CP098604.1 Protein Homology CDS 4317394 4318005 . + 0 ID=cds-UUF01875.1;Parent=gene-NDY25_18540;Dbxref=NCBI_GP:UUF01875.1;Name=UUF01875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448488.1;locus_tag=NDY25_18540;product=hypothetical protein;protein_id=UUF01875.1;transl_table=11 CP098604.1 Genbank gene 4318022 4318696 . - . ID=gene-NDY25_18545;Name=NDY25_18545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18545 CP098604.1 Protein Homology CDS 4318022 4318696 . - 0 ID=cds-UUF01876.1;Parent=gene-NDY25_18545;Dbxref=NCBI_GP:UUF01876.1;Name=UUF01876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448487.1;locus_tag=NDY25_18545;product=methyltransferase domain-containing protein;protein_id=UUF01876.1;transl_table=11 CP098604.1 Genbank gene 4318984 4319316 . + . ID=gene-NDY25_18550;Name=NDY25_18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18550 CP098604.1 Protein Homology CDS 4318984 4319316 . + 0 ID=cds-UUF04718.1;Parent=gene-NDY25_18550;Dbxref=NCBI_GP:UUF04718.1;Name=UUF04718.1;Ontology_term=GO:0022857,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015059047.1;locus_tag=NDY25_18550;product=SMR family transporter;protein_id=UUF04718.1;transl_table=11 CP098604.1 Genbank gene 4319432 4321054 . + . ID=gene-NDY25_18555;Name=NDY25_18555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18555 CP098604.1 Protein Homology CDS 4319432 4321054 . + 0 ID=cds-UUF01877.1;Parent=gene-NDY25_18555;Dbxref=NCBI_GP:UUF01877.1;Name=UUF01877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347876.1;locus_tag=NDY25_18555;product=histidine kinase famiy protein;protein_id=UUF01877.1;transl_table=11 CP098604.1 Genbank gene 4321832 4322110 . - . ID=gene-NDY25_18560;Name=NDY25_18560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18560 CP098604.1 Protein Homology CDS 4321832 4322110 . - 0 ID=cds-UUF01878.1;Parent=gene-NDY25_18560;Dbxref=NCBI_GP:UUF01878.1;Name=UUF01878.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157086.1;locus_tag=NDY25_18560;product=oxidative damage protection protein;protein_id=UUF01878.1;transl_table=11 CP098604.1 Genbank gene 4322164 4323237 . - . ID=gene-NDY25_18565;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=NDY25_18565 CP098604.1 Protein Homology CDS 4322164 4323237 . - 0 ID=cds-UUF01879.1;Parent=gene-NDY25_18565;Dbxref=NCBI_GP:UUF01879.1;Name=UUF01879.1;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0004844;gbkey=CDS;gene=mutY;go_function=uracil DNA N-glycosylase activity|0004844||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157085.1;locus_tag=NDY25_18565;product=A/G-specific adenine glycosylase;protein_id=UUF01879.1;transl_table=11 CP098604.1 Genbank pseudogene 4323294 4324980 . - . ID=gene-NDY25_18570;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=pseudogene;locus_tag=NDY25_18570;pseudo=true CP098604.1 Protein Homology CDS 4323294 4324980 . - 0 ID=cds-NDY25_18570;Parent=gene-NDY25_18570;Note=frameshifted;Ontology_term=GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990528.1;locus_tag=NDY25_18570;product=signal recognition particle-docking protein FtsY;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4325185 4325901 . - . ID=gene-NDY25_18575;Name=NDY25_18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18575 CP098604.1 Protein Homology CDS 4325185 4325901 . - 0 ID=cds-UUF04719.1;Parent=gene-NDY25_18575;Dbxref=NCBI_GP:UUF04719.1;Name=UUF04719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965956.1;locus_tag=NDY25_18575;product=AraC family transcriptional regulator;protein_id=UUF04719.1;transl_table=11 CP098604.1 Genbank gene 4326062 4327000 . + . ID=gene-NDY25_18580;Name=NDY25_18580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18580 CP098604.1 Protein Homology CDS 4326062 4327000 . + 0 ID=cds-UUF01880.1;Parent=gene-NDY25_18580;Dbxref=NCBI_GP:UUF01880.1;Name=UUF01880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810965.1;locus_tag=NDY25_18580;product=proline racemase family protein;protein_id=UUF01880.1;transl_table=11 CP098604.1 Genbank gene 4327000 4328262 . + . ID=gene-NDY25_18585;Name=NDY25_18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18585 CP098604.1 Protein Homology CDS 4327000 4328262 . + 0 ID=cds-UUF01881.1;Parent=gene-NDY25_18585;Dbxref=NCBI_GP:UUF01881.1;Name=UUF01881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037556.1;locus_tag=NDY25_18585;product=FAD-binding oxidoreductase;protein_id=UUF01881.1;transl_table=11 CP098604.1 Genbank gene 4328259 4328504 . + . ID=gene-NDY25_18590;Name=NDY25_18590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18590 CP098604.1 Protein Homology CDS 4328259 4328504 . + 0 ID=cds-UUF01882.1;Parent=gene-NDY25_18590;Dbxref=NCBI_GP:UUF01882.1;Name=UUF01882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301582.1;locus_tag=NDY25_18590;product=(2Fe-2S)-binding protein;protein_id=UUF01882.1;transl_table=11 CP098604.1 Genbank gene 4328497 4329810 . + . ID=gene-NDY25_18595;Name=NDY25_18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18595 CP098604.1 Protein Homology CDS 4328497 4329810 . + 0 ID=cds-UUF01883.1;Parent=gene-NDY25_18595;Dbxref=NCBI_GP:UUF01883.1;Name=UUF01883.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172038.1;locus_tag=NDY25_18595;product=FAD-dependent oxidoreductase;protein_id=UUF01883.1;transl_table=11 CP098604.1 Genbank gene 4329807 4330715 . + . ID=gene-NDY25_18600;Name=NDY25_18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18600 CP098604.1 Protein Homology CDS 4329807 4330715 . + 0 ID=cds-UUF01884.1;Parent=gene-NDY25_18600;Dbxref=NCBI_GP:UUF01884.1;Name=UUF01884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451841.1;locus_tag=NDY25_18600;product=dihydrodipicolinate synthase family protein;protein_id=UUF01884.1;transl_table=11 CP098604.1 Genbank gene 4330928 4332544 . + . ID=gene-NDY25_18605;Name=NDY25_18605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18605 CP098604.1 Protein Homology CDS 4330928 4332544 . + 0 ID=cds-UUF01885.1;Parent=gene-NDY25_18605;Dbxref=NCBI_GP:UUF01885.1;Name=UUF01885.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451842.1;locus_tag=NDY25_18605;product=aldehyde dehydrogenase family protein;protein_id=UUF01885.1;transl_table=11 CP098604.1 Genbank gene 4332541 4333740 . + . ID=gene-NDY25_18610;Name=NDY25_18610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18610 CP098604.1 Protein Homology CDS 4332541 4333740 . + 0 ID=cds-UUF01886.1;Parent=gene-NDY25_18610;Dbxref=NCBI_GP:UUF01886.1;Name=UUF01886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157076.1;locus_tag=NDY25_18610;product=Xaa-Pro peptidase family protein;protein_id=UUF01886.1;transl_table=11 CP098604.1 Genbank gene 4333836 4335674 . + . ID=gene-NDY25_18615;Name=NDY25_18615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18615 CP098604.1 Protein Homology CDS 4333836 4335674 . + 0 ID=cds-UUF04720.1;Parent=gene-NDY25_18615;Dbxref=NCBI_GP:UUF04720.1;Name=UUF04720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451844.1;locus_tag=NDY25_18615;product=DUF885 family protein;protein_id=UUF04720.1;transl_table=11 CP098604.1 Genbank gene 4335671 4337551 . + . ID=gene-NDY25_18620;Name=NDY25_18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18620 CP098604.1 Protein Homology CDS 4335671 4337551 . + 0 ID=cds-UUF01887.1;Parent=gene-NDY25_18620;Dbxref=NCBI_GP:UUF01887.1;Name=UUF01887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914076.1;locus_tag=NDY25_18620;product=DUF885 family protein;protein_id=UUF01887.1;transl_table=11 CP098604.1 Genbank gene 4337618 4339204 . + . ID=gene-NDY25_18625;Name=NDY25_18625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18625 CP098604.1 Protein Homology CDS 4337618 4339204 . + 0 ID=cds-UUF01888.1;Parent=gene-NDY25_18625;Dbxref=NCBI_GP:UUF01888.1;Name=UUF01888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003484927.1;locus_tag=NDY25_18625;product=APC family permease;protein_id=UUF01888.1;transl_table=11 CP098604.1 Genbank gene 4339194 4341542 . + . ID=gene-NDY25_18630;Name=NDY25_18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18630 CP098604.1 Protein Homology CDS 4339194 4341542 . + 0 ID=cds-UUF01889.1;Parent=gene-NDY25_18630;Dbxref=NCBI_GP:UUF01889.1;Name=UUF01889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451847.1;locus_tag=NDY25_18630;product=S9 family peptidase;protein_id=UUF01889.1;transl_table=11 CP098604.1 Genbank pseudogene 4341539 4343178 . + . ID=gene-NDY25_18635;Name=NDY25_18635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18635;pseudo=true CP098604.1 Protein Homology CDS 4341539 4343178 . + 0 ID=cds-NDY25_18635;Parent=gene-NDY25_18635;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008574367.1;locus_tag=NDY25_18635;product=DUF5597 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4343411 4343707 . + . ID=gene-NDY25_18640;Name=NDY25_18640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18640 CP098604.1 Protein Homology CDS 4343411 4343707 . + 0 ID=cds-UUF01890.1;Parent=gene-NDY25_18640;Dbxref=NCBI_GP:UUF01890.1;Name=UUF01890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378174.1;locus_tag=NDY25_18640;product=hypothetical protein;protein_id=UUF01890.1;transl_table=11 CP098604.1 Genbank pseudogene 4344306 4345390 . - . ID=gene-NDY25_18645;Name=NDY25_18645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18645;pseudo=true CP098604.1 Protein Homology CDS 4344306 4345390 . - 0 ID=cds-NDY25_18645;Parent=gene-NDY25_18645;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452074.1;locus_tag=NDY25_18645;product=DUF5694 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4345800 4346966 . - . ID=gene-NDY25_18650;Name=NDY25_18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18650 CP098604.1 Protein Homology CDS 4345800 4346966 . - 0 ID=cds-UUF01891.1;Parent=gene-NDY25_18650;Dbxref=NCBI_GP:UUF01891.1;Name=UUF01891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452074.1;locus_tag=NDY25_18650;product=DUF5694 domain-containing protein;protein_id=UUF01891.1;transl_table=11 CP098604.1 Genbank gene 4347156 4348721 . - . ID=gene-NDY25_18655;Name=NDY25_18655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18655 CP098604.1 Protein Homology CDS 4347156 4348721 . - 0 ID=cds-UUF01892.1;Parent=gene-NDY25_18655;Dbxref=NCBI_GP:UUF01892.1;Name=UUF01892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303782.1;locus_tag=NDY25_18655;product=S53 family peptidase;protein_id=UUF01892.1;transl_table=11 CP098604.1 Genbank gene 4349226 4351583 . + . ID=gene-NDY25_18660;Name=NDY25_18660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18660 CP098604.1 Protein Homology CDS 4349226 4351583 . + 0 ID=cds-UUF01893.1;Parent=gene-NDY25_18660;Dbxref=NCBI_GP:UUF01893.1;Name=UUF01893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167589.1;locus_tag=NDY25_18660;product=Tat pathway signal protein;protein_id=UUF01893.1;transl_table=11 CP098604.1 Genbank gene 4352024 4354837 . + . ID=gene-NDY25_18665;Name=NDY25_18665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18665 CP098604.1 Protein Homology CDS 4352024 4354837 . + 0 ID=cds-UUF01894.1;Parent=gene-NDY25_18665;Dbxref=NCBI_GP:UUF01894.1;Name=UUF01894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944278.1;locus_tag=NDY25_18665;product=TonB-dependent receptor;protein_id=UUF01894.1;transl_table=11 CP098604.1 Genbank gene 4354892 4359253 . + . ID=gene-NDY25_18670;Name=NDY25_18670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18670 CP098604.1 Protein Homology CDS 4354892 4359253 . + 0 ID=cds-UUF01895.1;Parent=gene-NDY25_18670;Dbxref=NCBI_GP:UUF01895.1;Name=UUF01895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154735.1;locus_tag=NDY25_18670;product=Ig-like domain-containing protein;protein_id=UUF01895.1;transl_table=11 CP098604.1 Genbank gene 4359250 4360869 . + . ID=gene-NDY25_18675;Name=NDY25_18675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18675 CP098604.1 Protein Homology CDS 4359250 4360869 . + 0 ID=cds-UUF01896.1;Parent=gene-NDY25_18675;Dbxref=NCBI_GP:UUF01896.1;Name=UUF01896.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005920354.1;locus_tag=NDY25_18675;product=family 43 glycosylhydrolase;protein_id=UUF01896.1;transl_table=11 CP098604.1 Genbank gene 4361061 4363424 . + . ID=gene-NDY25_18680;Name=NDY25_18680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18680 CP098604.1 Protein Homology CDS 4361061 4363424 . + 0 ID=cds-UUF01897.1;Parent=gene-NDY25_18680;Dbxref=NCBI_GP:UUF01897.1;Name=UUF01897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112183.1;locus_tag=NDY25_18680;product=S9 family peptidase;protein_id=UUF01897.1;transl_table=11 CP098604.1 Genbank gene 4363985 4366882 . + . ID=gene-NDY25_18685;Name=NDY25_18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18685 CP098604.1 Protein Homology CDS 4363985 4366882 . + 0 ID=cds-UUF01898.1;Parent=gene-NDY25_18685;Dbxref=NCBI_GP:UUF01898.1;Name=UUF01898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850071.1;locus_tag=NDY25_18685;product=TonB-dependent receptor;protein_id=UUF01898.1;transl_table=11 CP098604.1 Genbank gene 4367049 4369424 . + . ID=gene-NDY25_18690;Name=NDY25_18690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18690 CP098604.1 Protein Homology CDS 4367049 4369424 . + 0 ID=cds-UUF01899.1;Parent=gene-NDY25_18690;Dbxref=NCBI_GP:UUF01899.1;Name=UUF01899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448827.1;locus_tag=NDY25_18690;product=glycoside hydrolase family 127 protein;protein_id=UUF01899.1;transl_table=11 CP098604.1 Genbank gene 4369626 4371530 . - . ID=gene-NDY25_18695;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=NDY25_18695 CP098604.1 Protein Homology CDS 4369626 4371530 . - 0 ID=cds-UUF01900.1;Parent=gene-NDY25_18695;Dbxref=NCBI_GP:UUF01900.1;Name=UUF01900.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302880.1;locus_tag=NDY25_18695;product=molecular chaperone HtpG;protein_id=UUF01900.1;transl_table=11 CP098604.1 Genbank gene 4371769 4372392 . + . ID=gene-NDY25_18700;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=NDY25_18700 CP098604.1 Protein Homology CDS 4371769 4372392 . + 0 ID=cds-UUF01901.1;Parent=gene-NDY25_18700;Dbxref=NCBI_GP:UUF01901.1;Name=UUF01901.1;Ontology_term=GO:0031167,GO:0052913;gbkey=CDS;gene=rsmD;go_function=16S rRNA (guanine(966)-N(2))-methyltransferase activity|0052913||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019768378.1;locus_tag=NDY25_18700;product=16S rRNA (guanine(966)-N(2))-methyltransferase RsmD;protein_id=UUF01901.1;transl_table=11 CP098604.1 Genbank gene 4372389 4372895 . + . ID=gene-NDY25_18705;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=NDY25_18705 CP098604.1 Protein Homology CDS 4372389 4372895 . + 0 ID=cds-UUF01902.1;Parent=gene-NDY25_18705;Dbxref=NCBI_GP:UUF01902.1;Name=UUF01902.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372369.1;locus_tag=NDY25_18705;product=pantetheine-phosphate adenylyltransferase;protein_id=UUF01902.1;transl_table=11 CP098604.1 Genbank gene 4372943 4373440 . + . ID=gene-NDY25_18710;Name=NDY25_18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18710 CP098604.1 Protein Homology CDS 4372943 4373440 . + 0 ID=cds-UUF01903.1;Parent=gene-NDY25_18710;Dbxref=NCBI_GP:UUF01903.1;Name=UUF01903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157277.1;locus_tag=NDY25_18710;product=hypothetical protein;protein_id=UUF01903.1;transl_table=11 CP098604.1 Genbank gene 4373675 4373959 . + . ID=gene-NDY25_18715;Name=NDY25_18715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18715 CP098604.1 Protein Homology CDS 4373675 4373959 . + 0 ID=cds-UUF01904.1;Parent=gene-NDY25_18715;Dbxref=NCBI_GP:UUF01904.1;Name=UUF01904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502923.1;locus_tag=NDY25_18715;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=UUF01904.1;transl_table=11 CP098604.1 Genbank gene 4373956 4375734 . + . ID=gene-NDY25_18720;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=NDY25_18720 CP098604.1 Protein Homology CDS 4373956 4375734 . + 0 ID=cds-UUF01905.1;Parent=gene-NDY25_18720;Dbxref=NCBI_GP:UUF01905.1;Name=UUF01905.1;Ontology_term=GO:0006750;gbkey=CDS;gene=ggt;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157276.1;locus_tag=NDY25_18720;product=gamma-glutamyltransferase;protein_id=UUF01905.1;transl_table=11 CP098604.1 Genbank gene 4375804 4375881 . + . ID=gene-NDY25_18725;Name=NDY25_18725;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_18725 CP098604.1 cmsearch ncRNA 4375804 4375881 . + . ID=rna-NDY25_18725;Parent=gene-NDY25_18725;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_18725;product=sX9 sRNA CP098604.1 cmsearch exon 4375804 4375881 . + . ID=exon-NDY25_18725-1;Parent=rna-NDY25_18725;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_18725;product=sX9 sRNA CP098604.1 Genbank gene 4376105 4377862 . + . ID=gene-NDY25_18730;Name=NDY25_18730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18730 CP098604.1 Protein Homology CDS 4376105 4377862 . + 0 ID=cds-UUF01906.1;Parent=gene-NDY25_18730;Dbxref=NCBI_GP:UUF01906.1;Name=UUF01906.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917081.1;locus_tag=NDY25_18730;product=glycoside hydrolase family 9 protein;protein_id=UUF01906.1;transl_table=11 CP098604.1 Genbank gene 4378062 4378694 . - . ID=gene-NDY25_18735;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=NDY25_18735 CP098604.1 Protein Homology CDS 4378062 4378694 . - 0 ID=cds-UUF01907.1;Parent=gene-NDY25_18735;Dbxref=NCBI_GP:UUF01907.1;Name=UUF01907.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116260.1;locus_tag=NDY25_18735;product=uracil phosphoribosyltransferase;protein_id=UUF01907.1;transl_table=11 CP098604.1 Genbank gene 4378846 4381404 . + . ID=gene-NDY25_18740;Name=NDY25_18740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18740 CP098604.1 Protein Homology CDS 4378846 4381404 . + 0 ID=cds-UUF01908.1;Parent=gene-NDY25_18740;Dbxref=NCBI_GP:UUF01908.1;Name=UUF01908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014502926.1;locus_tag=NDY25_18740;product=TonB-dependent receptor;protein_id=UUF01908.1;transl_table=11 CP098604.1 Genbank gene 4381401 4382537 . + . ID=gene-NDY25_18745;Name=NDY25_18745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18745 CP098604.1 Protein Homology CDS 4381401 4382537 . + 0 ID=cds-UUF01909.1;Parent=gene-NDY25_18745;Dbxref=NCBI_GP:UUF01909.1;Name=UUF01909.1;Ontology_term=GO:0016158;gbkey=CDS;go_function=3-phytase activity|0016158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903287.1;locus_tag=NDY25_18745;product=phytase;protein_id=UUF01909.1;transl_table=11 CP098604.1 Genbank gene 4382534 4383913 . + . ID=gene-NDY25_18750;Name=NDY25_18750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18750 CP098604.1 Protein Homology CDS 4382534 4383913 . + 0 ID=cds-UUF01910.1;Parent=gene-NDY25_18750;Dbxref=NCBI_GP:UUF01910.1;Name=UUF01910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051644.1;locus_tag=NDY25_18750;product=metallophosphoesterase family protein;protein_id=UUF01910.1;transl_table=11 CP098604.1 Genbank gene 4384156 4384863 . + . ID=gene-NDY25_18755;Name=NDY25_18755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18755 CP098604.1 Protein Homology CDS 4384156 4384863 . + 0 ID=cds-UUF01911.1;Parent=gene-NDY25_18755;Dbxref=NCBI_GP:UUF01911.1;Name=UUF01911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157269.1;locus_tag=NDY25_18755;product=hypothetical protein;protein_id=UUF01911.1;transl_table=11 CP098604.1 Genbank gene 4385086 4386582 . - . ID=gene-NDY25_18760;Name=NDY25_18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18760 CP098604.1 Protein Homology CDS 4385086 4386582 . - 0 ID=cds-UUF01912.1;Parent=gene-NDY25_18760;Dbxref=NCBI_GP:UUF01912.1;Name=UUF01912.1;Ontology_term=GO:0008483,GO:0030170;gbkey=CDS;go_function=transaminase activity|0008483||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438074.1;locus_tag=NDY25_18760;product=aminotransferase class III-fold pyridoxal phosphate-dependent enzyme;protein_id=UUF01912.1;transl_table=11 CP098604.1 Genbank gene 4386704 4387135 . + . ID=gene-NDY25_18765;Name=NDY25_18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18765 CP098604.1 Protein Homology CDS 4386704 4387135 . + 0 ID=cds-UUF01913.1;Parent=gene-NDY25_18765;Dbxref=NCBI_GP:UUF01913.1;Name=UUF01913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489775.1;locus_tag=NDY25_18765;product=Lrp/AsnC family transcriptional regulator;protein_id=UUF01913.1;transl_table=11 CP098604.1 Genbank gene 4387665 4388735 . + . ID=gene-NDY25_18770;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=NDY25_18770 CP098604.1 Protein Homology CDS 4387665 4388735 . + 0 ID=cds-UUF01914.1;Parent=gene-NDY25_18770;Dbxref=NCBI_GP:UUF01914.1;Name=UUF01914.1;Ontology_term=GO:0016740,GO:0016853;gbkey=CDS;gene=queA;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037521.1;locus_tag=NDY25_18770;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=UUF01914.1;transl_table=11 CP098604.1 Genbank gene 4388817 4389962 . + . ID=gene-NDY25_18775;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=NDY25_18775 CP098604.1 Protein Homology CDS 4388817 4389962 . + 0 ID=cds-UUF01915.1;Parent=gene-NDY25_18775;Dbxref=NCBI_GP:UUF01915.1;Name=UUF01915.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=queuine tRNA-ribosyltransferase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157264.1;locus_tag=NDY25_18775;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=UUF01915.1;transl_table=11 CP098604.1 Genbank gene 4390094 4390447 . + . ID=gene-NDY25_18780;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=NDY25_18780 CP098604.1 Protein Homology CDS 4390094 4390447 . + 0 ID=cds-UUF01916.1;Parent=gene-NDY25_18780;Dbxref=NCBI_GP:UUF01916.1;Name=UUF01916.1;Ontology_term=GO:0009306,GO:0015450,GO:0005887;gbkey=CDS;gene=yajC;go_component=integral component of plasma membrane|0005887||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157263.1;locus_tag=NDY25_18780;product=preprotein translocase subunit YajC;protein_id=UUF01916.1;transl_table=11 CP098604.1 Genbank gene 4390639 4392483 . + . ID=gene-NDY25_18785;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=NDY25_18785 CP098604.1 Protein Homology CDS 4390639 4392483 . + 0 ID=cds-UUF01917.1;Parent=gene-NDY25_18785;Dbxref=NCBI_GP:UUF01917.1;Name=UUF01917.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917104.1;locus_tag=NDY25_18785;product=protein translocase subunit SecD;protein_id=UUF01917.1;transl_table=11 CP098604.1 Genbank gene 4392575 4393543 . + . ID=gene-NDY25_18790;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=NDY25_18790 CP098604.1 Protein Homology CDS 4392575 4393543 . + 0 ID=cds-UUF01918.1;Parent=gene-NDY25_18790;Dbxref=NCBI_GP:UUF01918.1;Name=UUF01918.1;Ontology_term=GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438079.1;locus_tag=NDY25_18790;product=protein translocase subunit SecF;protein_id=UUF01918.1;transl_table=11 CP098604.1 Genbank gene 4394015 4395122 . - . ID=gene-NDY25_18795;Name=NDY25_18795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18795 CP098604.1 Protein Homology CDS 4394866 4395122 . - 0 ID=cds-UUF01919.1;Parent=gene-NDY25_18795;Dbxref=NCBI_GP:UUF01919.1;Name=UUF01919.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_18795;product=IS3 family transposase;protein_id=UUF01919.1;transl_table=11 CP098604.1 Protein Homology CDS 4394015 4394867 . - 1 ID=cds-UUF01919.1;Parent=gene-NDY25_18795;Dbxref=NCBI_GP:UUF01919.1;Name=UUF01919.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_18795;product=IS3 family transposase;protein_id=UUF01919.1;transl_table=11 CP098604.1 Genbank gene 4395170 4395868 . + . ID=gene-NDY25_18800;Name=NDY25_18800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18800 CP098604.1 GeneMarkS-2+ CDS 4395170 4395868 . + 0 ID=cds-UUF01920.1;Parent=gene-NDY25_18800;Dbxref=NCBI_GP:UUF01920.1;Name=UUF01920.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18800;product=hypothetical protein;protein_id=UUF01920.1;transl_table=11 CP098604.1 Genbank gene 4395936 4396394 . + . ID=gene-NDY25_18805;Name=NDY25_18805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18805 CP098604.1 GeneMarkS-2+ CDS 4395936 4396394 . + 0 ID=cds-UUF01921.1;Parent=gene-NDY25_18805;Dbxref=NCBI_GP:UUF01921.1;Name=UUF01921.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18805;product=hypothetical protein;protein_id=UUF01921.1;transl_table=11 CP098604.1 Genbank gene 4396504 4396728 . - . ID=gene-NDY25_18810;Name=NDY25_18810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18810 CP098604.1 Protein Homology CDS 4396504 4396728 . - 0 ID=cds-UUF01922.1;Parent=gene-NDY25_18810;Dbxref=NCBI_GP:UUF01922.1;Name=UUF01922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451698.1;locus_tag=NDY25_18810;product=type I toxin-antitoxin system SymE family toxin;protein_id=UUF01922.1;transl_table=11 CP098604.1 Genbank gene 4397345 4397986 . + . ID=gene-NDY25_18815;Name=NDY25_18815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18815 CP098604.1 Protein Homology CDS 4397345 4397986 . + 0 ID=cds-UUF01923.1;Parent=gene-NDY25_18815;Dbxref=NCBI_GP:UUF01923.1;Name=UUF01923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171929.1;locus_tag=NDY25_18815;product=DUF1629 domain-containing protein;protein_id=UUF01923.1;transl_table=11 CP098604.1 Genbank gene 4398318 4398914 . + . ID=gene-NDY25_18820;Name=NDY25_18820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18820 CP098604.1 Protein Homology CDS 4398318 4398914 . + 0 ID=cds-UUF01924.1;Parent=gene-NDY25_18820;Dbxref=NCBI_GP:UUF01924.1;Name=UUF01924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005990057.1;locus_tag=NDY25_18820;product=DUF1629 domain-containing protein;protein_id=UUF01924.1;transl_table=11 CP098604.1 Genbank pseudogene 4398944 4402950 . + . ID=gene-NDY25_18825;Name=NDY25_18825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18825;pseudo=true CP098604.1 Protein Homology CDS 4398944 4402950 . + 0 ID=cds-NDY25_18825;Parent=gene-NDY25_18825;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052193.1;locus_tag=NDY25_18825;product=AHH domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4402991 4403641 . + . ID=gene-NDY25_18830;Name=NDY25_18830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18830 CP098604.1 GeneMarkS-2+ CDS 4402991 4403641 . + 0 ID=cds-UUF01925.1;Parent=gene-NDY25_18830;Dbxref=NCBI_GP:UUF01925.1;Name=UUF01925.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18830;product=hypothetical protein;protein_id=UUF01925.1;transl_table=11 CP098604.1 Genbank gene 4403879 4405156 . - . ID=gene-NDY25_18835;Name=NDY25_18835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18835 CP098604.1 Protein Homology CDS 4403879 4405156 . - 0 ID=cds-UUF01926.1;Parent=gene-NDY25_18835;Dbxref=NCBI_GP:UUF01926.1;Name=UUF01926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237567.1;locus_tag=NDY25_18835;product=carbohydrate porin;protein_id=UUF01926.1;transl_table=11 CP098604.1 Genbank gene 4405342 4407084 . - . ID=gene-NDY25_18840;Name=NDY25_18840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18840 CP098604.1 Protein Homology CDS 4405342 4407084 . - 0 ID=cds-UUF01927.1;Parent=gene-NDY25_18840;Dbxref=NCBI_GP:UUF01927.1;Name=UUF01927.1;Ontology_term=GO:0009401,GO:0022877,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993427.1;locus_tag=NDY25_18840;product=fructose-specific PTS transporter subunit EIIC;protein_id=UUF01927.1;transl_table=11 CP098604.1 Genbank gene 4407234 4408190 . - . ID=gene-NDY25_18845;Name=pfkB;gbkey=Gene;gene=pfkB;gene_biotype=protein_coding;locus_tag=NDY25_18845 CP098604.1 Protein Homology CDS 4407234 4408190 . - 0 ID=cds-UUF01928.1;Parent=gene-NDY25_18845;Dbxref=NCBI_GP:UUF01928.1;Name=UUF01928.1;Ontology_term=GO:0008662;gbkey=CDS;gene=pfkB;go_function=1-phosphofructokinase activity|0008662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007969646.1;locus_tag=NDY25_18845;product=1-phosphofructokinase;protein_id=UUF01928.1;transl_table=11 CP098604.1 Genbank gene 4408187 4410706 . - . ID=gene-NDY25_18850;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=NDY25_18850 CP098604.1 Protein Homology CDS 4408187 4410706 . - 0 ID=cds-UUF01929.1;Parent=gene-NDY25_18850;Dbxref=NCBI_GP:UUF01929.1;Name=UUF01929.1;Ontology_term=GO:0006808,GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=regulation of nitrogen utilization|0006808||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051629.1;locus_tag=NDY25_18850;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=UUF01929.1;transl_table=11 CP098604.1 Genbank gene 4410870 4411859 . + . ID=gene-NDY25_18855;Name=NDY25_18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18855 CP098604.1 Protein Homology CDS 4410870 4411859 . + 0 ID=cds-UUF01930.1;Parent=gene-NDY25_18855;Dbxref=NCBI_GP:UUF01930.1;Name=UUF01930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037512.1;locus_tag=NDY25_18855;product=LacI family transcriptional regulator;protein_id=UUF01930.1;transl_table=11 CP098604.1 Genbank gene 4412174 4415344 . - . ID=gene-NDY25_18860;Name=NDY25_18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18860 CP098604.1 Protein Homology CDS 4412174 4415344 . - 0 ID=cds-UUF01931.1;Parent=gene-NDY25_18860;Dbxref=NCBI_GP:UUF01931.1;Name=UUF01931.1;Ontology_term=GO:0042908,GO:0055085,GO:0015562,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997967.1;locus_tag=NDY25_18860;product=multidrug efflux RND transporter permease subunit;protein_id=UUF01931.1;transl_table=11 CP098604.1 Genbank pseudogene 4415357 4416662 . - . ID=gene-NDY25_18865;Name=NDY25_18865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_18865;pseudo=true CP098604.1 Protein Homology CDS 4415357 4416662 . - 0 ID=cds-NDY25_18865;Parent=gene-NDY25_18865;Note=frameshifted;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171867.1;locus_tag=NDY25_18865;product=efflux RND transporter periplasmic adaptor subunit;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4416677 4417336 . - . ID=gene-NDY25_18870;Name=NDY25_18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18870 CP098604.1 Protein Homology CDS 4416677 4417336 . - 0 ID=cds-UUF01932.1;Parent=gene-NDY25_18870;Dbxref=NCBI_GP:UUF01932.1;Name=UUF01932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005917360.1;locus_tag=NDY25_18870;product=TetR/AcrR family transcriptional regulator;protein_id=UUF01932.1;transl_table=11 CP098604.1 Genbank gene 4417625 4422634 . + . ID=gene-NDY25_18875;Name=NDY25_18875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18875 CP098604.1 Protein Homology CDS 4417625 4422634 . + 0 ID=cds-UUF01933.1;Parent=gene-NDY25_18875;Dbxref=NCBI_GP:UUF01933.1;Name=UUF01933.1;Ontology_term=GO:0019551,GO:0004352;gbkey=CDS;go_function=glutamate dehydrogenase (NAD+) activity|0004352||IEA;go_process=glutamate catabolic process to 2-oxoglutarate|0019551||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051626.1;locus_tag=NDY25_18875;product=NAD-glutamate dehydrogenase;protein_id=UUF01933.1;transl_table=11 CP098604.1 Genbank gene 4423325 4424326 . - . ID=gene-NDY25_18880;Name=NDY25_18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18880 CP098604.1 Protein Homology CDS 4423325 4424326 . - 0 ID=cds-UUF01934.1;Parent=gene-NDY25_18880;Dbxref=NCBI_GP:UUF01934.1;Name=UUF01934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449722.1;locus_tag=NDY25_18880;product=NADP-dependent oxidoreductase;protein_id=UUF01934.1;transl_table=11 CP098604.1 Genbank gene 4424560 4425324 . - . ID=gene-NDY25_18885;Name=NDY25_18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18885 CP098604.1 Protein Homology CDS 4424560 4425324 . - 0 ID=cds-UUF04721.1;Parent=gene-NDY25_18885;Dbxref=NCBI_GP:UUF04721.1;Name=UUF04721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449721.1;locus_tag=NDY25_18885;product=SDR family oxidoreductase;protein_id=UUF04721.1;transl_table=11 CP098604.1 Genbank gene 4425412 4426494 . - . ID=gene-NDY25_18890;Name=NDY25_18890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18890 CP098604.1 Protein Homology CDS 4425412 4426494 . - 0 ID=cds-UUF01935.1;Parent=gene-NDY25_18890;Dbxref=NCBI_GP:UUF01935.1;Name=UUF01935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904437.1;locus_tag=NDY25_18890;product=alkene reductase;protein_id=UUF01935.1;transl_table=11 CP098604.1 Genbank gene 4426627 4427202 . + . ID=gene-NDY25_18895;Name=NDY25_18895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18895 CP098604.1 Protein Homology CDS 4426627 4427202 . + 0 ID=cds-UUF01936.1;Parent=gene-NDY25_18895;Dbxref=NCBI_GP:UUF01936.1;Name=UUF01936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449719.1;locus_tag=NDY25_18895;product=TetR/AcrR family transcriptional regulator;protein_id=UUF01936.1;transl_table=11 CP098604.1 Genbank gene 4427301 4428155 . + . ID=gene-NDY25_18900;Name=NDY25_18900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18900 CP098604.1 Protein Homology CDS 4427301 4428155 . + 0 ID=cds-UUF01937.1;Parent=gene-NDY25_18900;Dbxref=NCBI_GP:UUF01937.1;Name=UUF01937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449718.1;locus_tag=NDY25_18900;product=oxidoreductase;protein_id=UUF01937.1;transl_table=11 CP098604.1 Genbank gene 4428267 4429253 . + . ID=gene-NDY25_18905;Name=NDY25_18905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18905 CP098604.1 Protein Homology CDS 4428267 4429253 . + 0 ID=cds-UUF01938.1;Parent=gene-NDY25_18905;Dbxref=NCBI_GP:UUF01938.1;Name=UUF01938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019660308.1;locus_tag=NDY25_18905;product=oxidoreductase;protein_id=UUF01938.1;transl_table=11 CP098604.1 Genbank gene 4429250 4429672 . + . ID=gene-NDY25_18910;Name=NDY25_18910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18910 CP098604.1 Protein Homology CDS 4429250 4429672 . + 0 ID=cds-UUF01939.1;Parent=gene-NDY25_18910;Dbxref=NCBI_GP:UUF01939.1;Name=UUF01939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449716.1;locus_tag=NDY25_18910;product=hypothetical protein;protein_id=UUF01939.1;transl_table=11 CP098604.1 Genbank gene 4429733 4431163 . - . ID=gene-NDY25_18915;Name=NDY25_18915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18915 CP098604.1 Protein Homology CDS 4429733 4431163 . - 0 ID=cds-UUF01940.1;Parent=gene-NDY25_18915;Dbxref=NCBI_GP:UUF01940.1;Name=UUF01940.1;Ontology_term=GO:0006855,GO:0009410,GO:0005887;gbkey=CDS;go_component=integral component of plasma membrane|0005887||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA,response to xenobiotic stimulus|0009410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922949.1;locus_tag=NDY25_18915;product=DHA2 family efflux MFS transporter permease subunit;protein_id=UUF01940.1;transl_table=11 CP098604.1 Genbank gene 4431584 4432576 . - . ID=gene-NDY25_18920;Name=NDY25_18920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18920 CP098604.1 Protein Homology CDS 4431584 4432576 . - 0 ID=cds-UUF01941.1;Parent=gene-NDY25_18920;Dbxref=NCBI_GP:UUF01941.1;Name=UUF01941.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156204.1;locus_tag=NDY25_18920;product=response regulator;protein_id=UUF01941.1;transl_table=11 CP098604.1 Genbank gene 4432610 4436704 . - . ID=gene-NDY25_18925;Name=NDY25_18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18925 CP098604.1 Protein Homology CDS 4432610 4436704 . - 0 ID=cds-UUF01942.1;Parent=gene-NDY25_18925;Dbxref=NCBI_GP:UUF01942.1;Name=UUF01942.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037503.1;locus_tag=NDY25_18925;product=response regulator;protein_id=UUF01942.1;transl_table=11 CP098604.1 Genbank gene 4436912 4438216 . - . ID=gene-NDY25_18930;Name=NDY25_18930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18930 CP098604.1 Protein Homology CDS 4436912 4438216 . - 0 ID=cds-UUF01943.1;Parent=gene-NDY25_18930;Dbxref=NCBI_GP:UUF01943.1;Name=UUF01943.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408789.1;locus_tag=NDY25_18930;product=DUF445 family protein;protein_id=UUF01943.1;transl_table=11 CP098604.1 Genbank gene 4438382 4439236 . - . ID=gene-NDY25_18935;Name=NDY25_18935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18935 CP098604.1 Protein Homology CDS 4438382 4439236 . - 0 ID=cds-UUF01944.1;Parent=gene-NDY25_18935;Dbxref=NCBI_GP:UUF01944.1;Name=UUF01944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915330.1;locus_tag=NDY25_18935;product=plasmid replication/partition related protein;protein_id=UUF01944.1;transl_table=11 CP098604.1 Genbank gene 4439402 4440325 . + . ID=gene-NDY25_18940;Name=NDY25_18940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18940 CP098604.1 GeneMarkS-2+ CDS 4439402 4440325 . + 0 ID=cds-UUF01945.1;Parent=gene-NDY25_18940;Dbxref=NCBI_GP:UUF01945.1;Name=UUF01945.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18940;product=hypothetical protein;protein_id=UUF01945.1;transl_table=11 CP098604.1 Genbank gene 4440322 4441542 . + . ID=gene-NDY25_18945;Name=NDY25_18945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18945 CP098604.1 GeneMarkS-2+ CDS 4440322 4441542 . + 0 ID=cds-UUF01946.1;Parent=gene-NDY25_18945;Dbxref=NCBI_GP:UUF01946.1;Name=UUF01946.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_18945;product=hypothetical protein;protein_id=UUF01946.1;transl_table=11 CP098604.1 Genbank gene 4441536 4442531 . + . ID=gene-NDY25_18950;Name=NDY25_18950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18950 CP098604.1 Protein Homology CDS 4441536 4442531 . + 0 ID=cds-UUF01947.1;Parent=gene-NDY25_18950;Dbxref=NCBI_GP:UUF01947.1;Name=UUF01947.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024487.2;locus_tag=NDY25_18950;product=DNA2/NAM7 family helicase;protein_id=UUF01947.1;transl_table=11 CP098604.1 Genbank gene 4442592 4443956 . - . ID=gene-NDY25_18955;Name=NDY25_18955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18955 CP098604.1 Protein Homology CDS 4442592 4443956 . - 0 ID=cds-UUF01948.1;Parent=gene-NDY25_18955;Dbxref=NCBI_GP:UUF01948.1;Name=UUF01948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571353.1;locus_tag=NDY25_18955;product=aspartate aminotransferase family protein;protein_id=UUF01948.1;transl_table=11 CP098604.1 Genbank gene 4444353 4446029 . + . ID=gene-NDY25_18960;Name=NDY25_18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18960 CP098604.1 Protein Homology CDS 4444353 4446029 . + 0 ID=cds-UUF01949.1;Parent=gene-NDY25_18960;Dbxref=NCBI_GP:UUF01949.1;Name=UUF01949.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915324.1;locus_tag=NDY25_18960;product=OFA family MFS transporter;protein_id=UUF01949.1;transl_table=11 CP098604.1 Genbank gene 4446036 4446881 . + . ID=gene-NDY25_18965;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=NDY25_18965 CP098604.1 Protein Homology CDS 4446036 4446881 . + 0 ID=cds-UUF01950.1;Parent=gene-NDY25_18965;Dbxref=NCBI_GP:UUF01950.1;Name=UUF01950.1;Ontology_term=GO:0009061,GO:0015942,GO:0008863,GO:0009326;gbkey=CDS;gene=fdhD;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA;go_process=anaerobic respiration|0009061||IEA,formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156198.1;locus_tag=NDY25_18965;product=formate dehydrogenase accessory sulfurtransferase FdhD;protein_id=UUF01950.1;transl_table=11 CP098604.1 Genbank gene 4446878 4449226 . + . ID=gene-NDY25_18970;Name=NDY25_18970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18970 CP098604.1 Protein Homology CDS 4446878 4449226 . + 0 ID=cds-UUF01951.1;Parent=gene-NDY25_18970;Dbxref=NCBI_GP:UUF01951.1;Name=UUF01951.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915320.1;locus_tag=NDY25_18970;product=FdhF/YdeP family oxidoreductase;protein_id=UUF01951.1;transl_table=11 CP098604.1 Genbank gene 4449216 4449494 . + . ID=gene-NDY25_18975;Name=NDY25_18975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18975 CP098604.1 Protein Homology CDS 4449216 4449494 . + 0 ID=cds-UUF01952.1;Parent=gene-NDY25_18975;Dbxref=NCBI_GP:UUF01952.1;Name=UUF01952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449705.1;locus_tag=NDY25_18975;product=hypothetical protein;protein_id=UUF01952.1;transl_table=11 CP098604.1 Genbank gene 4450870 4452177 . + . ID=gene-NDY25_18980;Name=NDY25_18980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18980 CP098604.1 Protein Homology CDS 4450870 4452177 . + 0 ID=cds-UUF01953.1;Parent=gene-NDY25_18980;Dbxref=NCBI_GP:UUF01953.1;Name=UUF01953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450891.1;locus_tag=NDY25_18980;product=MHS family MFS transporter;protein_id=UUF01953.1;transl_table=11 CP098604.1 Genbank gene 4452264 4453562 . - . ID=gene-NDY25_18985;Name=NDY25_18985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18985 CP098604.1 Protein Homology CDS 4452264 4453562 . - 0 ID=cds-UUF01954.1;Parent=gene-NDY25_18985;Dbxref=NCBI_GP:UUF01954.1;Name=UUF01954.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237577.1;locus_tag=NDY25_18985;product=diguanylate cyclase;protein_id=UUF01954.1;transl_table=11 CP098604.1 Genbank gene 4454108 4455424 . - . ID=gene-NDY25_18990;Name=NDY25_18990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18990 CP098604.1 Protein Homology CDS 4454108 4455424 . - 0 ID=cds-UUF01955.1;Parent=gene-NDY25_18990;Dbxref=NCBI_GP:UUF01955.1;Name=UUF01955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453118.1;locus_tag=NDY25_18990;product=FAD-binding oxidoreductase;protein_id=UUF01955.1;transl_table=11 CP098604.1 Genbank gene 4455424 4456803 . - . ID=gene-NDY25_18995;Name=NDY25_18995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_18995 CP098604.1 Protein Homology CDS 4455424 4456803 . - 0 ID=cds-UUF01956.1;Parent=gene-NDY25_18995;Dbxref=NCBI_GP:UUF01956.1;Name=UUF01956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347795.1;locus_tag=NDY25_18995;product=glutamine synthetase family protein;protein_id=UUF01956.1;transl_table=11 CP098604.1 Genbank gene 4456966 4457721 . + . ID=gene-NDY25_19000;Name=NDY25_19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19000 CP098604.1 Protein Homology CDS 4456966 4457721 . + 0 ID=cds-UUF01957.1;Parent=gene-NDY25_19000;Dbxref=NCBI_GP:UUF01957.1;Name=UUF01957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488313.1;locus_tag=NDY25_19000;product=gamma-glutamyl-gamma-aminobutyrate hydrolase family protein;protein_id=UUF01957.1;transl_table=11 CP098604.1 Genbank gene 4457728 4459113 . + . ID=gene-NDY25_19005;Name=NDY25_19005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19005 CP098604.1 Protein Homology CDS 4457728 4459113 . + 0 ID=cds-UUF01958.1;Parent=gene-NDY25_19005;Dbxref=NCBI_GP:UUF01958.1;Name=UUF01958.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014508026.1;locus_tag=NDY25_19005;product=glutamine synthetase family protein;protein_id=UUF01958.1;transl_table=11 CP098604.1 Genbank gene 4459345 4460712 . + . ID=gene-NDY25_19010;Name=NDY25_19010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19010 CP098604.1 Protein Homology CDS 4459345 4460712 . + 0 ID=cds-UUF01959.1;Parent=gene-NDY25_19010;Dbxref=NCBI_GP:UUF01959.1;Name=UUF01959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162669.1;locus_tag=NDY25_19010;product=aspartate aminotransferase family protein;protein_id=UUF01959.1;transl_table=11 CP098604.1 Genbank gene 4460952 4462067 . + . ID=gene-NDY25_19015;Name=NDY25_19015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19015 CP098604.1 Protein Homology CDS 4460952 4462067 . + 0 ID=cds-UUF01960.1;Parent=gene-NDY25_19015;Dbxref=NCBI_GP:UUF01960.1;Name=UUF01960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305095.1;locus_tag=NDY25_19015;product=polyamine ABC transporter substrate-binding protein;protein_id=UUF01960.1;transl_table=11 CP098604.1 Genbank gene 4462265 4463467 . + . ID=gene-NDY25_19020;Name=NDY25_19020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19020 CP098604.1 Protein Homology CDS 4462265 4463467 . + 0 ID=cds-UUF01961.1;Parent=gene-NDY25_19020;Dbxref=NCBI_GP:UUF01961.1;Name=UUF01961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159217.1;locus_tag=NDY25_19020;product=HlyD family secretion protein;protein_id=UUF01961.1;transl_table=11 CP098604.1 Genbank gene 4463464 4465050 . + . ID=gene-NDY25_19025;Name=NDY25_19025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19025 CP098604.1 Protein Homology CDS 4463464 4465050 . + 0 ID=cds-UUF01962.1;Parent=gene-NDY25_19025;Dbxref=NCBI_GP:UUF01962.1;Name=UUF01962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302223.1;locus_tag=NDY25_19025;product=multidrug efflux MFS transporter;protein_id=UUF01962.1;transl_table=11 CP098604.1 Genbank gene 4465055 4466545 . + . ID=gene-NDY25_19030;Name=NDY25_19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19030 CP098604.1 Protein Homology CDS 4465055 4466545 . + 0 ID=cds-UUF01963.1;Parent=gene-NDY25_19030;Dbxref=NCBI_GP:UUF01963.1;Name=UUF01963.1;Ontology_term=GO:0006810,GO:0015288,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156183.1;locus_tag=NDY25_19030;product=efflux transporter outer membrane subunit;protein_id=UUF01963.1;transl_table=11 CP098604.1 Genbank gene 4466655 4467773 . + . ID=gene-NDY25_19035;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=NDY25_19035 CP098604.1 Protein Homology CDS 4466655 4467773 . + 0 ID=cds-UUF01964.1;Parent=gene-NDY25_19035;Dbxref=NCBI_GP:UUF01964.1;Name=UUF01964.1;Ontology_term=GO:0015846,GO:0005524,GO:0015417,GO:0009898,GO:0055052;gbkey=CDS;gene=potA;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ABC-type polyamine transporter activity|0015417||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449560.1;locus_tag=NDY25_19035;product=polyamine ABC transporter ATP-binding protein;protein_id=UUF01964.1;transl_table=11 CP098604.1 Genbank gene 4467835 4467910 . + . ID=gene-NDY25_19040;Name=NDY25_19040;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_19040 CP098604.1 cmsearch ncRNA 4467835 4467910 . + . ID=rna-NDY25_19040;Parent=gene-NDY25_19040;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19040;product=sX9 sRNA CP098604.1 cmsearch exon 4467835 4467910 . + . ID=exon-NDY25_19040-1;Parent=rna-NDY25_19040;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19040;product=sX9 sRNA CP098604.1 Genbank gene 4467902 4468813 . + . ID=gene-NDY25_19045;Name=NDY25_19045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19045 CP098604.1 Protein Homology CDS 4467902 4468813 . + 0 ID=cds-UUF01965.1;Parent=gene-NDY25_19045;Dbxref=NCBI_GP:UUF01965.1;Name=UUF01965.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302220.1;locus_tag=NDY25_19045;product=ABC transporter permease subunit;protein_id=UUF01965.1;transl_table=11 CP098604.1 Genbank gene 4468810 4469658 . + . ID=gene-NDY25_19050;Name=NDY25_19050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19050 CP098604.1 Protein Homology CDS 4468810 4469658 . + 0 ID=cds-UUF01966.1;Parent=gene-NDY25_19050;Dbxref=NCBI_GP:UUF01966.1;Name=UUF01966.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449558.1;locus_tag=NDY25_19050;product=ABC transporter permease subunit;protein_id=UUF01966.1;transl_table=11 CP098604.1 Genbank gene 4469798 4470193 . - . ID=gene-NDY25_19055;Name=NDY25_19055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19055 CP098604.1 Protein Homology CDS 4469798 4470193 . - 0 ID=cds-UUF01967.1;Parent=gene-NDY25_19055;Dbxref=NCBI_GP:UUF01967.1;Name=UUF01967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449557.1;locus_tag=NDY25_19055;product=hypothetical protein;protein_id=UUF01967.1;transl_table=11 CP098604.1 Genbank gene 4470473 4471864 . + . ID=gene-NDY25_19060;Name=NDY25_19060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19060 CP098604.1 Protein Homology CDS 4470473 4471864 . + 0 ID=cds-UUF01968.1;Parent=gene-NDY25_19060;Dbxref=NCBI_GP:UUF01968.1;Name=UUF01968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571330.1;locus_tag=NDY25_19060;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=UUF01968.1;transl_table=11 CP098604.1 Genbank gene 4472066 4473067 . - . ID=gene-NDY25_19065;Name=NDY25_19065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19065 CP098604.1 Protein Homology CDS 4472066 4473067 . - 0 ID=cds-UUF01969.1;Parent=gene-NDY25_19065;Dbxref=NCBI_GP:UUF01969.1;Name=UUF01969.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488333.1;locus_tag=NDY25_19065;product=magnesium and cobalt transport protein CorA;protein_id=UUF01969.1;transl_table=11 CP098604.1 Genbank gene 4473082 4474260 . - . ID=gene-NDY25_19070;Name=NDY25_19070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19070 CP098604.1 Protein Homology CDS 4473082 4474260 . - 0 ID=cds-UUF04722.1;Parent=gene-NDY25_19070;Dbxref=NCBI_GP:UUF04722.1;Name=UUF04722.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449554.1;locus_tag=NDY25_19070;product=DUF4105 domain-containing protein;protein_id=UUF04722.1;transl_table=11 CP098604.1 Genbank gene 4474338 4475216 . - . ID=gene-NDY25_19075;Name=NDY25_19075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19075 CP098604.1 Protein Homology CDS 4474338 4475216 . - 0 ID=cds-UUF01970.1;Parent=gene-NDY25_19075;Dbxref=NCBI_GP:UUF01970.1;Name=UUF01970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003488337.1;locus_tag=NDY25_19075;product=CBS domain-containing protein;protein_id=UUF01970.1;transl_table=11 CP098604.1 Genbank gene 4475313 4475831 . - . ID=gene-NDY25_19080;Name=NDY25_19080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19080 CP098604.1 Protein Homology CDS 4475313 4475831 . - 0 ID=cds-UUF01971.1;Parent=gene-NDY25_19080;Dbxref=NCBI_GP:UUF01971.1;Name=UUF01971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347782.1;locus_tag=NDY25_19080;product=hypothetical protein;protein_id=UUF01971.1;transl_table=11 CP098604.1 Genbank gene 4475831 4476316 . - . ID=gene-NDY25_19085;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=NDY25_19085 CP098604.1 Protein Homology CDS 4475831 4476316 . - 0 ID=cds-UUF01972.1;Parent=gene-NDY25_19085;Dbxref=NCBI_GP:UUF01972.1;Name=UUF01972.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=ribonuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449551.1;locus_tag=NDY25_19085;product=rRNA maturation RNase YbeY;protein_id=UUF01972.1;transl_table=11 CP098604.1 Genbank pseudogene 4476572 4477525 . - . ID=gene-NDY25_19090;Name=NDY25_19090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19090;pseudo=true CP098604.1 Protein Homology CDS 4476572 4477525 . - 0 ID=cds-NDY25_19090;Parent=gene-NDY25_19090;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174255.1;locus_tag=NDY25_19090;product=PhoH family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4478057 4479526 . - . ID=gene-NDY25_19095;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=NDY25_19095 CP098604.1 Protein Homology CDS 4478057 4479526 . - 0 ID=cds-UUF01973.1;Parent=gene-NDY25_19095;Dbxref=NCBI_GP:UUF01973.1;Name=UUF01973.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372574.1;locus_tag=NDY25_19095;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=UUF01973.1;transl_table=11 CP098604.1 Genbank gene 4479596 4480210 . - . ID=gene-NDY25_19100;Name=NDY25_19100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19100 CP098604.1 Protein Homology CDS 4479596 4480210 . - 0 ID=cds-UUF01974.1;Parent=gene-NDY25_19100;Dbxref=NCBI_GP:UUF01974.1;Name=UUF01974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449547.1;locus_tag=NDY25_19100;product=glutathione S-transferase family protein;protein_id=UUF01974.1;transl_table=11 CP098604.1 Genbank pseudogene 4480330 4480721 . + . ID=gene-NDY25_19105;Name=NDY25_19105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19105;pseudo=true CP098604.1 Protein Homology CDS 4480330 4480721 . + 0 ID=cds-NDY25_19105;Parent=gene-NDY25_19105;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156170.1;locus_tag=NDY25_19105;product=HTH domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4480840 4481832 . + . ID=gene-NDY25_19110;Name=NDY25_19110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19110 CP098604.1 Protein Homology CDS 4480840 4481832 . + 0 ID=cds-UUF01975.1;Parent=gene-NDY25_19110;Dbxref=NCBI_GP:UUF01975.1;Name=UUF01975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171389.1;locus_tag=NDY25_19110;product=transglycosylase SLT domain-containing protein;protein_id=UUF01975.1;transl_table=11 CP098604.1 Genbank gene 4482010 4482654 . + . ID=gene-NDY25_19115;Name=petA;gbkey=Gene;gene=petA;gene_biotype=protein_coding;locus_tag=NDY25_19115 CP098604.1 Protein Homology CDS 4482010 4482654 . + 0 ID=cds-UUF01976.1;Parent=gene-NDY25_19115;Dbxref=NCBI_GP:UUF01976.1;Name=UUF01976.1;Ontology_term=GO:0009060,GO:0008121,GO:0009055,GO:0045275;gbkey=CDS;gene=petA;go_component=respiratory chain complex III|0045275||IEA;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA;go_process=aerobic respiration|0009060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010382428.1;locus_tag=NDY25_19115;product=ubiquinol-cytochrome c reductase iron-sulfur subunit;protein_id=UUF01976.1;transl_table=11 CP098604.1 Genbank gene 4482654 4483913 . + . ID=gene-NDY25_19120;Name=NDY25_19120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19120 CP098604.1 Protein Homology CDS 4482654 4483913 . + 0 ID=cds-UUF01977.1;Parent=gene-NDY25_19120;Dbxref=NCBI_GP:UUF01977.1;Name=UUF01977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965674.1;locus_tag=NDY25_19120;product=cytochrome bc complex cytochrome b subunit;protein_id=UUF01977.1;transl_table=11 CP098604.1 Genbank gene 4483906 4484664 . + . ID=gene-NDY25_19125;Name=NDY25_19125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19125 CP098604.1 Protein Homology CDS 4483906 4484664 . + 0 ID=cds-UUF01978.1;Parent=gene-NDY25_19125;Dbxref=NCBI_GP:UUF01978.1;Name=UUF01978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009598114.1;locus_tag=NDY25_19125;product=cytochrome c1;protein_id=UUF01978.1;transl_table=11 CP098604.1 Genbank gene 4485390 4486025 . + . ID=gene-NDY25_19130;Name=NDY25_19130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19130 CP098604.1 Protein Homology CDS 4485390 4486025 . + 0 ID=cds-UUF01979.1;Parent=gene-NDY25_19130;Dbxref=NCBI_GP:UUF01979.1;Name=UUF01979.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002810483.1;locus_tag=NDY25_19130;product=glutathione S-transferase N-terminal domain-containing protein;protein_id=UUF01979.1;transl_table=11 CP098604.1 Genbank gene 4486104 4486547 . + . ID=gene-NDY25_19135;Name=NDY25_19135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19135 CP098604.1 Protein Homology CDS 4486104 4486547 . + 0 ID=cds-UUF01980.1;Parent=gene-NDY25_19135;Dbxref=NCBI_GP:UUF01980.1;Name=UUF01980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901612.1;locus_tag=NDY25_19135;product=ClpXP protease specificity-enhancing factor;protein_id=UUF01980.1;transl_table=11 CP098604.1 Genbank gene 4486798 4487142 . - . ID=gene-NDY25_19140;Name=NDY25_19140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19140 CP098604.1 Protein Homology CDS 4486798 4487142 . - 0 ID=cds-UUF01981.1;Parent=gene-NDY25_19140;Dbxref=NCBI_GP:UUF01981.1;Name=UUF01981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453245.1;locus_tag=NDY25_19140;product=DUF3301 domain-containing protein;protein_id=UUF01981.1;transl_table=11 CP098604.1 Genbank gene 4487573 4492045 . + . ID=gene-NDY25_19145;Name=NDY25_19145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19145 CP098604.1 Protein Homology CDS 4487573 4492045 . + 0 ID=cds-UUF01982.1;Parent=gene-NDY25_19145;Dbxref=NCBI_GP:UUF01982.1;Name=UUF01982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463325.1;locus_tag=NDY25_19145;product=DEAD/DEAH box helicase;protein_id=UUF01982.1;transl_table=11 CP098604.1 Genbank pseudogene 4491985 4492603 . - . ID=gene-NDY25_19150;Name=NDY25_19150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19150;pseudo=true CP098604.1 Protein Homology CDS 4491985 4492603 . - 0 ID=cds-NDY25_19150;Parent=gene-NDY25_19150;Note=frameshifted;Ontology_term=GO:0006284,GO:0003905;gbkey=CDS;go_function=alkylbase DNA N-glycosylase activity|0003905||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017170332.1;locus_tag=NDY25_19150;product=DNA-3-methyladenine glycosylase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4492918 4494576 . + . ID=gene-NDY25_19155;Name=NDY25_19155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19155 CP098604.1 Protein Homology CDS 4492918 4494576 . + 0 ID=cds-UUF01983.1;Parent=gene-NDY25_19155;Dbxref=NCBI_GP:UUF01983.1;Name=UUF01983.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037458.1;locus_tag=NDY25_19155;product=methyl-accepting chemotaxis protein;protein_id=UUF01983.1;transl_table=11 CP098604.1 Genbank gene 4494588 4495097 . + . ID=gene-NDY25_19160;Name=NDY25_19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19160 CP098604.1 Protein Homology CDS 4494588 4495097 . + 0 ID=cds-UUF01984.1;Parent=gene-NDY25_19160;Dbxref=NCBI_GP:UUF01984.1;Name=UUF01984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576110.1;locus_tag=NDY25_19160;product=chemotaxis protein CheW;protein_id=UUF01984.1;transl_table=11 CP098604.1 Genbank gene 4495150 4496235 . - . ID=gene-NDY25_19165;Name=NDY25_19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19165 CP098604.1 Protein Homology CDS 4495150 4496235 . - 0 ID=cds-UUF01985.1;Parent=gene-NDY25_19165;Dbxref=NCBI_GP:UUF01985.1;Name=UUF01985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303972.1;locus_tag=NDY25_19165;product=sensor domain-containing diguanylate cyclase;protein_id=UUF01985.1;transl_table=11 CP098604.1 Genbank gene 4496421 4496495 . - . ID=gene-NDY25_19170;Name=NDY25_19170;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_19170 CP098604.1 cmsearch ncRNA 4496421 4496495 . - . ID=rna-NDY25_19170;Parent=gene-NDY25_19170;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19170;product=sX9 sRNA CP098604.1 cmsearch exon 4496421 4496495 . - . ID=exon-NDY25_19170-1;Parent=rna-NDY25_19170;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19170;product=sX9 sRNA CP098604.1 Genbank gene 4496594 4496770 . - . ID=gene-NDY25_19175;Name=NDY25_19175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19175 CP098604.1 Protein Homology CDS 4496594 4496770 . - 0 ID=cds-UUF01986.1;Parent=gene-NDY25_19175;Dbxref=NCBI_GP:UUF01986.1;Name=UUF01986.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156157.1;locus_tag=NDY25_19175;product=hypothetical protein;protein_id=UUF01986.1;transl_table=11 CP098604.1 Genbank gene 4496968 4497043 . - . ID=gene-NDY25_19180;Name=NDY25_19180;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_19180 CP098604.1 tRNAscan-SE tRNA 4496968 4497043 . - . ID=rna-NDY25_19180;Parent=gene-NDY25_19180;anticodon=(pos:complement(4497008..4497010));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_19180;product=tRNA-Ala CP098604.1 tRNAscan-SE exon 4496968 4497043 . - . ID=exon-NDY25_19180-1;Parent=rna-NDY25_19180;anticodon=(pos:complement(4497008..4497010));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_19180;product=tRNA-Ala CP098604.1 Genbank gene 4497149 4497550 . - . ID=gene-NDY25_19185;Name=NDY25_19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19185 CP098604.1 Protein Homology CDS 4497149 4497550 . - 0 ID=cds-UUF01987.1;Parent=gene-NDY25_19185;Dbxref=NCBI_GP:UUF01987.1;Name=UUF01987.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003485983.1;locus_tag=NDY25_19185;product=H-NS histone family protein;protein_id=UUF01987.1;transl_table=11 CP098604.1 Genbank gene 4497785 4498879 . - . ID=gene-NDY25_19190;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=NDY25_19190 CP098604.1 Protein Homology CDS 4497785 4498879 . - 0 ID=cds-UUF01988.1;Parent=gene-NDY25_19190;Dbxref=NCBI_GP:UUF01988.1;Name=UUF01988.1;Ontology_term=GO:0006396,GO:0016891;gbkey=CDS;gene=rnd;go_function=endoribonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904996.1;locus_tag=NDY25_19190;product=ribonuclease D;protein_id=UUF01988.1;transl_table=11 CP098604.1 Genbank gene 4498998 4500842 . + . ID=gene-NDY25_19195;Name=NDY25_19195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19195 CP098604.1 Protein Homology CDS 4498998 4500842 . + 0 ID=cds-UUF01989.1;Parent=gene-NDY25_19195;Dbxref=NCBI_GP:UUF01989.1;Name=UUF01989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965697.1;locus_tag=NDY25_19195;product=formylglycine-generating enzyme family protein;protein_id=UUF01989.1;transl_table=11 CP098604.1 Genbank gene 4501104 4502357 . + . ID=gene-NDY25_19200;Name=NDY25_19200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19200 CP098604.1 Protein Homology CDS 4501104 4502357 . + 0 ID=cds-UUF01990.1;Parent=gene-NDY25_19200;Dbxref=NCBI_GP:UUF01990.1;Name=UUF01990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453235.1;locus_tag=NDY25_19200;product=virulence factor;protein_id=UUF01990.1;transl_table=11 CP098604.1 Genbank gene 4502948 4504285 . - . ID=gene-NDY25_19205;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=NDY25_19205 CP098604.1 Protein Homology CDS 4502948 4504285 . - 0 ID=cds-UUF01991.1;Parent=gene-NDY25_19205;Dbxref=NCBI_GP:UUF01991.1;Name=UUF01991.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507983.1;locus_tag=NDY25_19205;product=exodeoxyribonuclease VII large subunit;protein_id=UUF01991.1;transl_table=11 CP098604.1 Genbank gene 4504340 4505407 . - . ID=gene-NDY25_19210;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=NDY25_19210 CP098604.1 Protein Homology CDS 4504340 4505407 . - 0 ID=cds-UUF01992.1;Parent=gene-NDY25_19210;Dbxref=NCBI_GP:UUF01992.1;Name=UUF01992.1;Ontology_term=GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051562.1;locus_tag=NDY25_19210;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=UUF01992.1;transl_table=11 CP098604.1 Genbank gene 4505432 4506919 . + . ID=gene-NDY25_19215;Name=NDY25_19215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19215 CP098604.1 Protein Homology CDS 4505432 4506919 . + 0 ID=cds-UUF01993.1;Parent=gene-NDY25_19215;Dbxref=NCBI_GP:UUF01993.1;Name=UUF01993.1;Ontology_term=GO:0052855;gbkey=CDS;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965703.1;locus_tag=NDY25_19215;product=NAD(P)H-hydrate dehydratase;protein_id=UUF01993.1;transl_table=11 CP098604.1 Genbank gene 4506916 4507416 . + . ID=gene-NDY25_19220;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=NDY25_19220 CP098604.1 Protein Homology CDS 4506916 4507416 . + 0 ID=cds-UUF01994.1;Parent=gene-NDY25_19220;Dbxref=NCBI_GP:UUF01994.1;Name=UUF01994.1;Ontology_term=GO:0006400,GO:0016887,GO:0005737;gbkey=CDS;gene=tsaE;go_component=cytoplasm|0005737||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452171.1;locus_tag=NDY25_19220;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=UUF01994.1;transl_table=11 CP098604.1 Genbank pseudogene 4507487 4509218 . + . ID=gene-NDY25_19225;Name=NDY25_19225;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19225;pseudo=true CP098604.1 Protein Homology CDS 4507487 4509218 . + 0 ID=cds-NDY25_19225;Parent=gene-NDY25_19225;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159951.1;locus_tag=NDY25_19225;product=N-acetylmuramoyl-L-alanine amidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4509356 4511218 . + . ID=gene-NDY25_19230;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=NDY25_19230 CP098604.1 Protein Homology CDS 4509356 4511218 . + 0 ID=cds-UUF01995.1;Parent=gene-NDY25_19230;Dbxref=NCBI_GP:UUF01995.1;Name=UUF01995.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486008.1;locus_tag=NDY25_19230;product=DNA mismatch repair endonuclease MutL;protein_id=UUF01995.1;transl_table=11 CP098604.1 Genbank gene 4511218 4512156 . + . ID=gene-NDY25_19235;Name=NDY25_19235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19235 CP098604.1 Protein Homology CDS 4511218 4512156 . + 0 ID=cds-UUF01996.1;Parent=gene-NDY25_19235;Dbxref=NCBI_GP:UUF01996.1;Name=UUF01996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452174.1;locus_tag=NDY25_19235;product=DUF1684 domain-containing protein;protein_id=UUF01996.1;transl_table=11 CP098604.1 Genbank gene 4512173 4513138 . + . ID=gene-NDY25_19240;Name=NDY25_19240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19240 CP098604.1 Protein Homology CDS 4512173 4513138 . + 0 ID=cds-UUF01997.1;Parent=gene-NDY25_19240;Dbxref=NCBI_GP:UUF01997.1;Name=UUF01997.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904483.1;locus_tag=NDY25_19240;product=TraB/GumN family protein;protein_id=UUF01997.1;transl_table=11 CP098604.1 Genbank gene 4513186 4513776 . - . ID=gene-NDY25_19245;Name=phaR;gbkey=Gene;gene=phaR;gene_biotype=protein_coding;locus_tag=NDY25_19245 CP098604.1 Protein Homology CDS 4513186 4513776 . - 0 ID=cds-UUF01998.1;Parent=gene-NDY25_19245;Dbxref=NCBI_GP:UUF01998.1;Name=UUF01998.1;Ontology_term=GO:0006355;gbkey=CDS;gene=phaR;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486016.1;locus_tag=NDY25_19245;product=polyhydroxyalkanoate synthesis repressor PhaR;protein_id=UUF01998.1;transl_table=11 CP098604.1 Genbank gene 4513934 4514674 . - . ID=gene-NDY25_19250;Name=NDY25_19250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19250 CP098604.1 Protein Homology CDS 4513934 4514674 . - 0 ID=cds-UUF01999.1;Parent=gene-NDY25_19250;Dbxref=NCBI_GP:UUF01999.1;Name=UUF01999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090372.1;locus_tag=NDY25_19250;product=beta-ketoacyl-ACP reductase;protein_id=UUF01999.1;transl_table=11 CP098604.1 Genbank gene 4514788 4515654 . - . ID=gene-NDY25_19255;Name=gluQRS;gbkey=Gene;gene=gluQRS;gene_biotype=protein_coding;locus_tag=NDY25_19255 CP098604.1 Protein Homology CDS 4514788 4515654 . - 0 ID=cds-UUF02000.1;Parent=gene-NDY25_19255;Dbxref=NCBI_GP:UUF02000.1;Name=UUF02000.1;Ontology_term=GO:0043039,GO:0004812;gbkey=CDS;gene=gluQRS;go_function=aminoacyl-tRNA ligase activity|0004812||IEA;go_process=tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452178.1;locus_tag=NDY25_19255;product=tRNA glutamyl-Q(34) synthetase GluQRS;protein_id=UUF02000.1;transl_table=11 CP098604.1 Genbank gene 4515753 4516631 . + . ID=gene-NDY25_19260;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=NDY25_19260 CP098604.1 Protein Homology CDS 4515753 4516631 . + 0 ID=cds-UUF02001.1;Parent=gene-NDY25_19260;Dbxref=NCBI_GP:UUF02001.1;Name=UUF02001.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051556.1;locus_tag=NDY25_19260;product=protease HtpX;protein_id=UUF02001.1;transl_table=11 CP098604.1 Genbank gene 4517044 4519113 . - . ID=gene-NDY25_19265;Name=NDY25_19265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19265 CP098604.1 Protein Homology CDS 4517044 4519113 . - 0 ID=cds-UUF02002.1;Parent=gene-NDY25_19265;Dbxref=NCBI_GP:UUF02002.1;Name=UUF02002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037435.1;locus_tag=NDY25_19265;product=EAL domain-containing protein;protein_id=UUF02002.1;transl_table=11 CP098604.1 Genbank gene 4519231 4520412 . - . ID=gene-NDY25_19270;Name=NDY25_19270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19270 CP098604.1 Protein Homology CDS 4519231 4520412 . - 0 ID=cds-UUF02003.1;Parent=gene-NDY25_19270;Dbxref=NCBI_GP:UUF02003.1;Name=UUF02003.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923170.1;locus_tag=NDY25_19270;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=UUF02003.1;transl_table=11 CP098604.1 Genbank gene 4520409 4520957 . - . ID=gene-NDY25_19275;Name=NDY25_19275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19275 CP098604.1 Protein Homology CDS 4520409 4520957 . - 0 ID=cds-UUF02004.1;Parent=gene-NDY25_19275;Dbxref=NCBI_GP:UUF02004.1;Name=UUF02004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503075.1;locus_tag=NDY25_19275;product=YaeQ family protein;protein_id=UUF02004.1;transl_table=11 CP098604.1 Genbank gene 4521019 4521498 . - . ID=gene-NDY25_19280;Name=NDY25_19280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19280 CP098604.1 Protein Homology CDS 4521019 4521498 . - 0 ID=cds-UUF02005.1;Parent=gene-NDY25_19280;Dbxref=NCBI_GP:UUF02005.1;Name=UUF02005.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019397064.1;locus_tag=NDY25_19280;product=YaiI/YqxD family protein;protein_id=UUF02005.1;transl_table=11 CP098604.1 Genbank gene 4521766 4521975 . + . ID=gene-NDY25_19285;Name=NDY25_19285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19285 CP098604.1 Protein Homology CDS 4521766 4521975 . + 0 ID=cds-UUF02006.1;Parent=gene-NDY25_19285;Dbxref=NCBI_GP:UUF02006.1;Name=UUF02006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009597534.1;locus_tag=NDY25_19285;product=cold-shock protein;protein_id=UUF02006.1;transl_table=11 CP098604.1 Genbank gene 4522156 4522854 . + . ID=gene-NDY25_19290;Name=NDY25_19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19290 CP098604.1 Protein Homology CDS 4522156 4522854 . + 0 ID=cds-UUF02007.1;Parent=gene-NDY25_19290;Dbxref=NCBI_GP:UUF02007.1;Name=UUF02007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156137.1;locus_tag=NDY25_19290;product=glutathione S-transferase;protein_id=UUF02007.1;transl_table=11 CP098604.1 Genbank gene 4522992 4523858 . - . ID=gene-NDY25_19295;Name=NDY25_19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19295 CP098604.1 Protein Homology CDS 4522992 4523858 . - 0 ID=cds-UUF02008.1;Parent=gene-NDY25_19295;Dbxref=NCBI_GP:UUF02008.1;Name=UUF02008.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451991.1;locus_tag=NDY25_19295;product=alpha/beta hydrolase;protein_id=UUF02008.1;transl_table=11 CP098604.1 Genbank gene 4524032 4525588 . + . ID=gene-NDY25_19300;Name=NDY25_19300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19300 CP098604.1 Protein Homology CDS 4524032 4525588 . + 0 ID=cds-UUF02009.1;Parent=gene-NDY25_19300;Dbxref=NCBI_GP:UUF02009.1;Name=UUF02009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408741.1;locus_tag=NDY25_19300;product=YdiU family protein;protein_id=UUF02009.1;transl_table=11 CP098604.1 Genbank gene 4525683 4526243 . + . ID=gene-NDY25_19305;Name=NDY25_19305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19305 CP098604.1 Protein Homology CDS 4525683 4526243 . + 0 ID=cds-UUF02010.1;Parent=gene-NDY25_19305;Dbxref=NCBI_GP:UUF02010.1;Name=UUF02010.1;Ontology_term=GO:0009116,GO:0003999;gbkey=CDS;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007965724.1;locus_tag=NDY25_19305;product=adenine phosphoribosyltransferase;protein_id=UUF02010.1;transl_table=11 CP098604.1 Genbank gene 4526377 4527753 . - . ID=gene-NDY25_19310;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=NDY25_19310 CP098604.1 Protein Homology CDS 4526377 4527753 . - 0 ID=cds-UUF02011.1;Parent=gene-NDY25_19310;Dbxref=NCBI_GP:UUF02011.1;Name=UUF02011.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=dbpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090365.1;locus_tag=NDY25_19310;product=ATP-dependent RNA helicase DbpA;protein_id=UUF02011.1;transl_table=11 CP098604.1 Genbank gene 4527854 4529749 . + . ID=gene-NDY25_19315;Name=NDY25_19315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19315 CP098604.1 Protein Homology CDS 4527854 4529749 . + 0 ID=cds-UUF02012.1;Parent=gene-NDY25_19315;Dbxref=NCBI_GP:UUF02012.1;Name=UUF02012.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005923190.1;locus_tag=NDY25_19315;product=ATP-binding cassette domain-containing protein;protein_id=UUF02012.1;transl_table=11 CP098604.1 Genbank gene 4530257 4530682 . - . ID=gene-NDY25_19320;Name=NDY25_19320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19320 CP098604.1 Protein Homology CDS 4530257 4530682 . - 0 ID=cds-UUF02013.1;Parent=gene-NDY25_19320;Dbxref=NCBI_GP:UUF02013.1;Name=UUF02013.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486050.1;locus_tag=NDY25_19320;product=barstar family protein;protein_id=UUF02013.1;transl_table=11 CP098604.1 Genbank gene 4530679 4531128 . - . ID=gene-NDY25_19325;Name=NDY25_19325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19325 CP098604.1 Protein Homology CDS 4530679 4531128 . - 0 ID=cds-UUF02014.1;Parent=gene-NDY25_19325;Dbxref=NCBI_GP:UUF02014.1;Name=UUF02014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372742.1;locus_tag=NDY25_19325;product=ribonuclease;protein_id=UUF02014.1;transl_table=11 CP098604.1 Genbank gene 4531395 4532006 . + . ID=gene-NDY25_19330;Name=NDY25_19330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19330 CP098604.1 Protein Homology CDS 4531395 4532006 . + 0 ID=cds-UUF02015.1;Parent=gene-NDY25_19330;Dbxref=NCBI_GP:UUF02015.1;Name=UUF02015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037422.1;locus_tag=NDY25_19330;product=superoxide dismutase;protein_id=UUF02015.1;transl_table=11 CP098604.1 Genbank gene 4532166 4532999 . - . ID=gene-NDY25_19335;Name=NDY25_19335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19335 CP098604.1 Protein Homology CDS 4532166 4532999 . - 0 ID=cds-UUF02016.1;Parent=gene-NDY25_19335;Dbxref=NCBI_GP:UUF02016.1;Name=UUF02016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913068.1;locus_tag=NDY25_19335;product=inositol monophosphatase;protein_id=UUF02016.1;transl_table=11 CP098604.1 Genbank gene 4533117 4533884 . + . ID=gene-NDY25_19340;Name=NDY25_19340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19340 CP098604.1 Protein Homology CDS 4533117 4533884 . + 0 ID=cds-UUF02017.1;Parent=gene-NDY25_19340;Dbxref=NCBI_GP:UUF02017.1;Name=UUF02017.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486059.1;locus_tag=NDY25_19340;product=RNA methyltransferase;protein_id=UUF02017.1;transl_table=11 CP098604.1 Genbank gene 4533935 4534864 . + . ID=gene-NDY25_19345;Name=NDY25_19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19345 CP098604.1 Protein Homology CDS 4533935 4534864 . + 0 ID=cds-UUF02018.1;Parent=gene-NDY25_19345;Dbxref=NCBI_GP:UUF02018.1;Name=UUF02018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850179.1;locus_tag=NDY25_19345;product=phosphate/phosphite/phosphonate ABC transporter substrate-binding protein;protein_id=UUF02018.1;transl_table=11 CP098604.1 Genbank gene 4534861 4536978 . + . ID=gene-NDY25_19350;Name=NDY25_19350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19350 CP098604.1 Protein Homology CDS 4534861 4536978 . + 0 ID=cds-UUF02019.1;Parent=gene-NDY25_19350;Dbxref=NCBI_GP:UUF02019.1;Name=UUF02019.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168504.1;locus_tag=NDY25_19350;product=EAL domain-containing protein;protein_id=UUF02019.1;transl_table=11 CP098604.1 Genbank gene 4537111 4538139 . - . ID=gene-NDY25_19355;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=NDY25_19355 CP098604.1 Protein Homology CDS 4537111 4538139 . - 0 ID=cds-UUF02020.1;Parent=gene-NDY25_19355;Dbxref=NCBI_GP:UUF02020.1;Name=UUF02020.1;Ontology_term=GO:0072581;gbkey=CDS;gene=epmB;go_process=protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine|0072581||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408738.1;locus_tag=NDY25_19355;product=EF-P beta-lysylation protein EpmB;protein_id=UUF02020.1;transl_table=11 CP098604.1 Genbank gene 4538243 4538809 . + . ID=gene-NDY25_19360;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=NDY25_19360 CP098604.1 Protein Homology CDS 4538243 4538809 . + 0 ID=cds-UUF02021.1;Parent=gene-NDY25_19360;Dbxref=NCBI_GP:UUF02021.1;Name=UUF02021.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301003.1;locus_tag=NDY25_19360;product=elongation factor P;protein_id=UUF02021.1;transl_table=11 CP098604.1 Genbank gene 4538815 4539663 . + . ID=gene-NDY25_19365;Name=NDY25_19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19365 CP098604.1 Protein Homology CDS 4538815 4539663 . + 0 ID=cds-UUF02022.1;Parent=gene-NDY25_19365;Dbxref=NCBI_GP:UUF02022.1;Name=UUF02022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037415.1;locus_tag=NDY25_19365;product=hypothetical protein;protein_id=UUF02022.1;transl_table=11 CP098604.1 Genbank gene 4539682 4541019 . + . ID=gene-NDY25_19370;Name=NDY25_19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19370 CP098604.1 Protein Homology CDS 4539682 4541019 . + 0 ID=cds-UUF02023.1;Parent=gene-NDY25_19370;Dbxref=NCBI_GP:UUF02023.1;Name=UUF02023.1;Ontology_term=GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159956.1;locus_tag=NDY25_19370;product=TRZ/ATZ family hydrolase;protein_id=UUF02023.1;transl_table=11 CP098604.1 Genbank gene 4541049 4541768 . + . ID=gene-NDY25_19375;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=NDY25_19375 CP098604.1 Protein Homology CDS 4541049 4541768 . + 0 ID=cds-UUF02024.1;Parent=gene-NDY25_19375;Dbxref=NCBI_GP:UUF02024.1;Name=UUF02024.1;Ontology_term=GO:0006744,GO:0008689;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinone-9 3-O-methyltransferase activity|0008689||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372777.1;locus_tag=NDY25_19375;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=UUF02024.1;transl_table=11 CP098604.1 Genbank gene 4541884 4542549 . + . ID=gene-NDY25_19380;Name=NDY25_19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19380 CP098604.1 Protein Homology CDS 4541884 4542549 . + 0 ID=cds-UUF04723.1;Parent=gene-NDY25_19380;Dbxref=NCBI_GP:UUF04723.1;Name=UUF04723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507953.1;locus_tag=NDY25_19380;product=phosphoglycolate phosphatase;protein_id=UUF04723.1;transl_table=11 CP098604.1 Genbank gene 4542578 4543267 . + . ID=gene-NDY25_19385;Name=NDY25_19385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19385 CP098604.1 Protein Homology CDS 4542578 4543267 . + 0 ID=cds-UUF02025.1;Parent=gene-NDY25_19385;Dbxref=NCBI_GP:UUF02025.1;Name=UUF02025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156122.1;locus_tag=NDY25_19385;product=phytoene/squalene synthase family protein;protein_id=UUF02025.1;transl_table=11 CP098604.1 Genbank gene 4543900 4545570 . - . ID=gene-NDY25_19390;Name=NDY25_19390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19390 CP098604.1 Protein Homology CDS 4543900 4545570 . - 0 ID=cds-UUF02026.1;Parent=gene-NDY25_19390;Dbxref=NCBI_GP:UUF02026.1;Name=UUF02026.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449342.1;locus_tag=NDY25_19390;product=glycoside hydrolase family 28 protein;protein_id=UUF02026.1;transl_table=11 CP098604.1 Genbank gene 4545868 4545957 . + . ID=gene-NDY25_19395;Name=NDY25_19395;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_19395 CP098604.1 cmsearch ncRNA 4545868 4545957 . + . ID=rna-NDY25_19395;Parent=gene-NDY25_19395;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19395;product=sX9 sRNA CP098604.1 cmsearch exon 4545868 4545957 . + . ID=exon-NDY25_19395-1;Parent=rna-NDY25_19395;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19395;product=sX9 sRNA CP098604.1 Genbank gene 4546341 4547147 . - . ID=gene-NDY25_19400;Name=NDY25_19400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19400 CP098604.1 Protein Homology CDS 4546341 4547147 . - 0 ID=cds-UUF02027.1;Parent=gene-NDY25_19400;Dbxref=NCBI_GP:UUF02027.1;Name=UUF02027.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801519.1;locus_tag=NDY25_19400;product=IS5 family transposase;protein_id=UUF02027.1;transl_table=11 CP098604.1 Genbank gene 4547396 4548529 . - . ID=gene-NDY25_19405;Name=NDY25_19405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19405 CP098604.1 Protein Homology CDS 4547396 4548529 . - 0 ID=cds-UUF02028.1;Parent=gene-NDY25_19405;Dbxref=NCBI_GP:UUF02028.1;Name=UUF02028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903775.1;locus_tag=NDY25_19405;product=pectate lyase;protein_id=UUF02028.1;transl_table=11 CP098604.1 Genbank gene 4548708 4549733 . - . ID=gene-NDY25_19410;Name=NDY25_19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19410 CP098604.1 Protein Homology CDS 4548708 4549733 . - 0 ID=cds-UUF02029.1;Parent=gene-NDY25_19410;Dbxref=NCBI_GP:UUF02029.1;Name=UUF02029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347720.1;locus_tag=NDY25_19410;product=hypothetical protein;protein_id=UUF02029.1;transl_table=11 CP098604.1 Genbank gene 4550152 4550655 . + . ID=gene-NDY25_19415;Name=NDY25_19415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19415 CP098604.1 Protein Homology CDS 4550152 4550655 . + 0 ID=cds-UUF02030.1;Parent=gene-NDY25_19415;Dbxref=NCBI_GP:UUF02030.1;Name=UUF02030.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472089.1;locus_tag=NDY25_19415;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=UUF02030.1;transl_table=11 CP098604.1 Genbank gene 4550842 4551132 . + . ID=gene-NDY25_19420;Name=NDY25_19420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19420 CP098604.1 Protein Homology CDS 4550842 4551132 . + 0 ID=cds-UUF02031.1;Parent=gene-NDY25_19420;Dbxref=NCBI_GP:UUF02031.1;Name=UUF02031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017156118.1;locus_tag=NDY25_19420;product=hypothetical protein;protein_id=UUF02031.1;transl_table=11 CP098604.1 Genbank gene 4551324 4551914 . + . ID=gene-NDY25_19425;Name=NDY25_19425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19425 CP098604.1 Protein Homology CDS 4551324 4551914 . + 0 ID=cds-UUF02032.1;Parent=gene-NDY25_19425;Dbxref=NCBI_GP:UUF02032.1;Name=UUF02032.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024966.2;locus_tag=NDY25_19425;product=nuclear transport factor 2 family protein;protein_id=UUF02032.1;transl_table=11 CP098604.1 Genbank gene 4551836 4552105 . + . ID=gene-NDY25_19430;Name=NDY25_19430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19430 CP098604.1 Protein Homology CDS 4551836 4552105 . + 0 ID=cds-UUF02033.1;Parent=gene-NDY25_19430;Dbxref=NCBI_GP:UUF02033.1;Name=UUF02033.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023380.2;locus_tag=NDY25_19430;product=DUF3471 domain-containing protein;protein_id=UUF02033.1;transl_table=11 CP098604.1 Genbank gene 4552192 4553037 . - . ID=gene-NDY25_19435;Name=eutC;gbkey=Gene;gene=eutC;gene_biotype=protein_coding;locus_tag=NDY25_19435 CP098604.1 Protein Homology CDS 4552192 4553037 . - 0 ID=cds-UUF02034.1;Parent=gene-NDY25_19435;Dbxref=NCBI_GP:UUF02034.1;Name=UUF02034.1;Ontology_term=GO:0006520,GO:0008851;gbkey=CDS;gene=eutC;go_function=ethanolamine ammonia-lyase activity|0008851||IEA;go_process=cellular amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452609.1;locus_tag=NDY25_19435;product=ethanolamine ammonia-lyase subunit EutC;protein_id=UUF02034.1;transl_table=11 CP098604.1 Genbank gene 4553037 4554443 . - . ID=gene-NDY25_19440;Name=NDY25_19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19440 CP098604.1 Protein Homology CDS 4553037 4554443 . - 0 ID=cds-UUF02035.1;Parent=gene-NDY25_19440;Dbxref=NCBI_GP:UUF02035.1;Name=UUF02035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452608.1;locus_tag=NDY25_19440;product=ethanolamine ammonia-lyase subunit EutB;protein_id=UUF02035.1;transl_table=11 CP098604.1 Genbank gene 4554440 4555804 . - . ID=gene-NDY25_19445;Name=eat;gbkey=Gene;gene=eat;gene_biotype=protein_coding;locus_tag=NDY25_19445 CP098604.1 Protein Homology CDS 4554440 4555804 . - 0 ID=cds-UUF02036.1;Parent=gene-NDY25_19445;Dbxref=NCBI_GP:UUF02036.1;Name=UUF02036.1;Ontology_term=GO:0006865,GO:0015171,GO:0016021;gbkey=CDS;gene=eat;go_component=integral component of membrane|0016021||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997946.1;locus_tag=NDY25_19445;product=ethanolamine permease;protein_id=UUF02036.1;transl_table=11 CP098604.1 Genbank gene 4556161 4557000 . - . ID=gene-NDY25_19450;Name=NDY25_19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19450 CP098604.1 Protein Homology CDS 4556161 4557000 . - 0 ID=cds-UUF02037.1;Parent=gene-NDY25_19450;Dbxref=NCBI_GP:UUF02037.1;Name=UUF02037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159191.1;locus_tag=NDY25_19450;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=UUF02037.1;transl_table=11 CP098604.1 Genbank gene 4557000 4558349 . - . ID=gene-NDY25_19455;Name=NDY25_19455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19455 CP098604.1 Protein Homology CDS 4557000 4558349 . - 0 ID=cds-UUF02038.1;Parent=gene-NDY25_19455;Dbxref=NCBI_GP:UUF02038.1;Name=UUF02038.1;Ontology_term=GO:0016812;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302579.1;locus_tag=NDY25_19455;product=dihydroorotase;protein_id=UUF02038.1;transl_table=11 CP098604.1 Genbank gene 4558346 4558639 . - . ID=gene-NDY25_19460;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=NDY25_19460 CP098604.1 Protein Homology CDS 4558346 4558639 . - 0 ID=cds-UUF02039.1;Parent=gene-NDY25_19460;Dbxref=NCBI_GP:UUF02039.1;Name=UUF02039.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158484.1;locus_tag=NDY25_19460;product=membrane protein insertion efficiency factor YidD;protein_id=UUF02039.1;transl_table=11 CP098604.1 Genbank gene 4558730 4559770 . + . ID=gene-NDY25_19465;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=NDY25_19465 CP098604.1 Protein Homology CDS 4558730 4559770 . + 0 ID=cds-UUF02040.1;Parent=gene-NDY25_19465;Dbxref=NCBI_GP:UUF02040.1;Name=UUF02040.1;Ontology_term=GO:0006355,GO:0019899;gbkey=CDS;gene=dksA;go_function=enzyme binding|0019899||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017112367.1;locus_tag=NDY25_19465;product=RNA polymerase-binding protein DksA;protein_id=UUF02040.1;transl_table=11 CP098604.1 Genbank gene 4559910 4561163 . - . ID=gene-NDY25_19470;Name=NDY25_19470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19470 CP098604.1 Protein Homology CDS 4559910 4561163 . - 0 ID=cds-UUF02041.1;Parent=gene-NDY25_19470;Dbxref=NCBI_GP:UUF02041.1;Name=UUF02041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573410.1;locus_tag=NDY25_19470;product=MFS transporter;protein_id=UUF02041.1;transl_table=11 CP098604.1 Genbank gene 4561160 4561597 . - . ID=gene-NDY25_19475;Name=NDY25_19475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19475 CP098604.1 Protein Homology CDS 4561160 4561597 . - 0 ID=cds-UUF02042.1;Parent=gene-NDY25_19475;Dbxref=NCBI_GP:UUF02042.1;Name=UUF02042.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159960.1;locus_tag=NDY25_19475;product=SufE family protein;protein_id=UUF02042.1;transl_table=11 CP098604.1 Genbank gene 4561839 4563278 . - . ID=gene-NDY25_19480;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=NDY25_19480 CP098604.1 Protein Homology CDS 4561839 4563278 . - 0 ID=cds-UUF02043.1;Parent=gene-NDY25_19480;Dbxref=NCBI_GP:UUF02043.1;Name=UUF02043.1;Ontology_term=GO:0006423,GO:0004817,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012444736.1;locus_tag=NDY25_19480;product=cysteine--tRNA ligase;protein_id=UUF02043.1;transl_table=11 CP098604.1 Genbank gene 4563477 4563977 . + . ID=gene-NDY25_19485;Name=NDY25_19485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19485 CP098604.1 Protein Homology CDS 4563477 4563977 . + 0 ID=cds-UUF04724.1;Parent=gene-NDY25_19485;Dbxref=NCBI_GP:UUF04724.1;Name=UUF04724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114649.1;locus_tag=NDY25_19485;product=hypothetical protein;protein_id=UUF04724.1;transl_table=11 CP098604.1 Genbank gene 4564290 4565321 . + . ID=gene-NDY25_19490;Name=NDY25_19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19490 CP098604.1 Protein Homology CDS 4564290 4565321 . + 0 ID=cds-UUF02044.1;Parent=gene-NDY25_19490;Dbxref=NCBI_GP:UUF02044.1;Name=UUF02044.1;Ontology_term=GO:0042450,GO:0016597,GO:0043857;gbkey=CDS;go_function=amino acid binding|0016597||IEA,N-acetylornithine carbamoyltransferase activity|0043857||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922555.1;locus_tag=NDY25_19490;product=N-acetylornithine carbamoyltransferase;protein_id=UUF02044.1;transl_table=11 CP098604.1 Genbank gene 4565374 4566615 . + . ID=gene-NDY25_19495;Name=NDY25_19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19495 CP098604.1 Protein Homology CDS 4565374 4566615 . + 0 ID=cds-UUF02045.1;Parent=gene-NDY25_19495;Dbxref=NCBI_GP:UUF02045.1;Name=UUF02045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486949.1;locus_tag=NDY25_19495;product=argininosuccinate synthase;protein_id=UUF02045.1;transl_table=11 CP098604.1 Genbank gene 4566850 4567950 . + . ID=gene-NDY25_19500;Name=NDY25_19500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19500 CP098604.1 Protein Homology CDS 4566850 4567950 . + 0 ID=cds-UUF02046.1;Parent=gene-NDY25_19500;Dbxref=NCBI_GP:UUF02046.1;Name=UUF02046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237600.1;locus_tag=NDY25_19500;product=acetylornithine deacetylase;protein_id=UUF02046.1;transl_table=11 CP098604.1 Genbank gene 4568026 4569369 . + . ID=gene-NDY25_19505;Name=NDY25_19505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19505 CP098604.1 Protein Homology CDS 4568026 4569369 . + 0 ID=cds-UUF02047.1;Parent=gene-NDY25_19505;Dbxref=NCBI_GP:UUF02047.1;Name=UUF02047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174254.1;locus_tag=NDY25_19505;product=acetylglutamate kinase;protein_id=UUF02047.1;transl_table=11 CP098604.1 Genbank gene 4569375 4569986 . + . ID=gene-NDY25_19510;Name=NDY25_19510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19510 CP098604.1 Protein Homology CDS 4569375 4569986 . + 0 ID=cds-UUF02048.1;Parent=gene-NDY25_19510;Dbxref=NCBI_GP:UUF02048.1;Name=UUF02048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573396.1;locus_tag=NDY25_19510;product=GNAT family N-acetyltransferase;protein_id=UUF02048.1;transl_table=11 CP098604.1 Genbank gene 4569983 4570933 . + . ID=gene-NDY25_19515;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=NDY25_19515 CP098604.1 Protein Homology CDS 4569983 4570933 . + 0 ID=cds-UUF02049.1;Parent=gene-NDY25_19515;Dbxref=NCBI_GP:UUF02049.1;Name=UUF02049.1;Ontology_term=GO:0006592,GO:0003942;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463283.1;locus_tag=NDY25_19515;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=UUF02049.1;transl_table=11 CP098604.1 Genbank gene 4571058 4572353 . + . ID=gene-NDY25_19520;Name=NDY25_19520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19520 CP098604.1 Protein Homology CDS 4571058 4572353 . + 0 ID=cds-UUF02050.1;Parent=gene-NDY25_19520;Dbxref=NCBI_GP:UUF02050.1;Name=UUF02050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116208.1;locus_tag=NDY25_19520;product=argininosuccinate lyase;protein_id=UUF02050.1;transl_table=11 CP098604.1 Genbank gene 4572353 4572718 . + . ID=gene-NDY25_19525;Name=NDY25_19525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19525 CP098604.1 Protein Homology CDS 4572353 4572718 . + 0 ID=cds-UUF02051.1;Parent=gene-NDY25_19525;Dbxref=NCBI_GP:UUF02051.1;Name=UUF02051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449418.1;locus_tag=NDY25_19525;product=cupin domain-containing protein;protein_id=UUF02051.1;transl_table=11 CP098604.1 Genbank gene 4572718 4572978 . + . ID=gene-NDY25_19530;Name=NDY25_19530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19530 CP098604.1 Protein Homology CDS 4572718 4572978 . + 0 ID=cds-UUF02052.1;Parent=gene-NDY25_19530;Dbxref=NCBI_GP:UUF02052.1;Name=UUF02052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347701.1;locus_tag=NDY25_19530;product=YciI family protein;protein_id=UUF02052.1;transl_table=11 CP098604.1 Genbank gene 4572992 4574146 . + . ID=gene-NDY25_19535;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=NDY25_19535 CP098604.1 Protein Homology CDS 4572992 4574146 . + 0 ID=cds-UUF02053.1;Parent=gene-NDY25_19535;Dbxref=NCBI_GP:UUF02053.1;Name=UUF02053.1;Ontology_term=GO:0006561,GO:0004349;gbkey=CDS;gene=proB;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167565.1;locus_tag=NDY25_19535;product=glutamate 5-kinase;protein_id=UUF02053.1;transl_table=11 CP098604.1 Genbank gene 4574281 4575525 . + . ID=gene-NDY25_19540;Name=NDY25_19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19540 CP098604.1 Protein Homology CDS 4574281 4575525 . + 0 ID=cds-UUF02054.1;Parent=gene-NDY25_19540;Dbxref=NCBI_GP:UUF02054.1;Name=UUF02054.1;Ontology_term=GO:0006561,GO:0004350,GO:0016620;gbkey=CDS;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007972357.1;locus_tag=NDY25_19540;product=glutamate-5-semialdehyde dehydrogenase;protein_id=UUF02054.1;transl_table=11 CP098604.1 Genbank gene 4575722 4577635 . + . ID=gene-NDY25_19545;Name=NDY25_19545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19545 CP098604.1 Protein Homology CDS 4575722 4577635 . + 0 ID=cds-UUF02055.1;Parent=gene-NDY25_19545;Dbxref=NCBI_GP:UUF02055.1;Name=UUF02055.1;Ontology_term=GO:0008152,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051520.1;locus_tag=NDY25_19545;product=CocE/NonD family hydrolase;protein_id=UUF02055.1;transl_table=11 CP098604.1 Genbank gene 4577616 4578842 . - . ID=gene-NDY25_19550;Name=NDY25_19550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19550 CP098604.1 Protein Homology CDS 4577616 4578842 . - 0 ID=cds-UUF04725.1;Parent=gene-NDY25_19550;Dbxref=NCBI_GP:UUF04725.1;Name=UUF04725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157790.1;locus_tag=NDY25_19550;product=MFS transporter;protein_id=UUF04725.1;transl_table=11 CP098604.1 Genbank gene 4578966 4579042 . - . ID=gene-NDY25_19555;Name=NDY25_19555;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_19555 CP098604.1 tRNAscan-SE tRNA 4578966 4579042 . - . ID=rna-NDY25_19555;Parent=gene-NDY25_19555;anticodon=(pos:complement(4579006..4579008));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_19555;product=tRNA-Pro CP098604.1 tRNAscan-SE exon 4578966 4579042 . - . ID=exon-NDY25_19555-1;Parent=rna-NDY25_19555;anticodon=(pos:complement(4579006..4579008));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_19555;product=tRNA-Pro CP098604.1 Genbank gene 4579102 4579212 . - . ID=gene-NDY25_19560;Name=cydX;gbkey=Gene;gene=cydX;gene_biotype=protein_coding;locus_tag=NDY25_19560 CP098604.1 Protein Homology CDS 4579102 4579212 . - 0 ID=cds-UUF02056.1;Parent=gene-NDY25_19560;Dbxref=NCBI_GP:UUF02056.1;Name=UUF02056.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydX;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008573380.1;locus_tag=NDY25_19560;product=cytochrome bd-I oxidase subunit CydX;protein_id=UUF02056.1;transl_table=11 CP098604.1 Genbank gene 4579304 4580455 . - . ID=gene-NDY25_19565;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=NDY25_19565 CP098604.1 Protein Homology CDS 4579304 4580455 . - 0 ID=cds-UUF02057.1;Parent=gene-NDY25_19565;Dbxref=NCBI_GP:UUF02057.1;Name=UUF02057.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347694.1;locus_tag=NDY25_19565;product=cytochrome d ubiquinol oxidase subunit II;protein_id=UUF02057.1;transl_table=11 CP098604.1 Genbank gene 4580471 4582093 . - . ID=gene-NDY25_19570;Name=NDY25_19570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19570 CP098604.1 Protein Homology CDS 4580471 4582093 . - 0 ID=cds-UUF02058.1;Parent=gene-NDY25_19570;Dbxref=NCBI_GP:UUF02058.1;Name=UUF02058.1;Ontology_term=GO:0019646,GO:0009055,GO:0070069;gbkey=CDS;go_component=cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=aerobic electron transport chain|0019646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163785.1;locus_tag=NDY25_19570;product=cytochrome ubiquinol oxidase subunit I;protein_id=UUF02058.1;transl_table=11 CP098604.1 Genbank gene 4582247 4583983 . + . ID=gene-NDY25_19575;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=NDY25_19575 CP098604.1 Protein Homology CDS 4582247 4583983 . + 0 ID=cds-UUF02059.1;Parent=gene-NDY25_19575;Dbxref=NCBI_GP:UUF02059.1;Name=UUF02059.1;Ontology_term=GO:0033228,GO:0005524,GO:0033230,GO:0005887,GO:0055051;gbkey=CDS;gene=cydD;go_component=integral component of plasma membrane|0005887||IEA,ATP-binding cassette (ABC) transporter complex%2C integrated substrate binding|0055051||IEA;go_function=ATP binding|0005524||IEA,ABC-type cysteine transporter activity|0033230||IEA;go_process=cysteine export across plasma membrane|0033228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850524.1;locus_tag=NDY25_19575;product=thiol reductant ABC exporter subunit CydD;protein_id=UUF02059.1;transl_table=11 CP098604.1 Genbank gene 4583946 4585655 . + . ID=gene-NDY25_19580;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=NDY25_19580 CP098604.1 Protein Homology CDS 4583946 4585655 . + 0 ID=cds-UUF04726.1;Parent=gene-NDY25_19580;Dbxref=NCBI_GP:UUF04726.1;Name=UUF04726.1;Ontology_term=GO:0033228,GO:0005524,GO:0033230,GO:0005887,GO:0055051;gbkey=CDS;gene=cydC;go_component=integral component of plasma membrane|0005887||IEA,ATP-binding cassette (ABC) transporter complex%2C integrated substrate binding|0055051||IEA;go_function=ATP binding|0005524||IEA,ABC-type cysteine transporter activity|0033230||IEA;go_process=cysteine export across plasma membrane|0033228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904041.1;locus_tag=NDY25_19580;product=thiol reductant ABC exporter subunit CydC;protein_id=UUF04726.1;transl_table=11 CP098604.1 Genbank gene 4585791 4586195 . - . ID=gene-NDY25_19585;Name=NDY25_19585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19585 CP098604.1 Protein Homology CDS 4585791 4586195 . - 0 ID=cds-UUF02060.1;Parent=gene-NDY25_19585;Dbxref=NCBI_GP:UUF02060.1;Name=UUF02060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904040.1;locus_tag=NDY25_19585;product=DUF1294 domain-containing protein;protein_id=UUF02060.1;transl_table=11 CP098604.1 Genbank pseudogene 4586207 4587407 . - . ID=gene-NDY25_19590;Name=NDY25_19590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19590;pseudo=true CP098604.1 Protein Homology CDS 4586207 4587407 . - 0 ID=cds-NDY25_19590;Parent=gene-NDY25_19590;Note=frameshifted;Ontology_term=GO:0009058,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503612.1;locus_tag=NDY25_19590;product=homoserine O-acetyltransferase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4587982 4588055 . + . ID=gene-NDY25_19595;Name=NDY25_19595;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_19595 CP098604.1 cmsearch ncRNA 4587982 4588055 . + . ID=rna-NDY25_19595;Parent=gene-NDY25_19595;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19595;product=sX9 sRNA CP098604.1 cmsearch exon 4587982 4588055 . + . ID=exon-NDY25_19595-1;Parent=rna-NDY25_19595;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_19595;product=sX9 sRNA CP098604.1 Genbank gene 4588103 4589116 . - . ID=gene-NDY25_19600;Name=NDY25_19600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19600 CP098604.1 Protein Homology CDS 4588103 4589116 . - 0 ID=cds-UUF02061.1;Parent=gene-NDY25_19600;Dbxref=NCBI_GP:UUF02061.1;Name=UUF02061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971030.1;locus_tag=NDY25_19600;product=tetratricopeptide repeat protein;protein_id=UUF02061.1;transl_table=11 CP098604.1 Genbank gene 4589116 4589550 . - . ID=gene-NDY25_19605;Name=NDY25_19605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19605 CP098604.1 Protein Homology CDS 4589116 4589550 . - 0 ID=cds-UUF02062.1;Parent=gene-NDY25_19605;Dbxref=NCBI_GP:UUF02062.1;Name=UUF02062.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051514.1;locus_tag=NDY25_19605;product=cytochrome c-type biogenesis protein CcmH;protein_id=UUF02062.1;transl_table=11 CP098604.1 Genbank gene 4589547 4590149 . - . ID=gene-NDY25_19610;Name=NDY25_19610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19610 CP098604.1 Protein Homology CDS 4589547 4590149 . - 0 ID=cds-UUF02063.1;Parent=gene-NDY25_19610;Dbxref=NCBI_GP:UUF02063.1;Name=UUF02063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157799.1;locus_tag=NDY25_19610;product=DsbE family thiol:disulfide interchange protein;protein_id=UUF02063.1;transl_table=11 CP098604.1 Genbank gene 4590142 4592079 . - . ID=gene-NDY25_19615;Name=NDY25_19615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19615 CP098604.1 Protein Homology CDS 4590142 4592079 . - 0 ID=cds-UUF02064.1;Parent=gene-NDY25_19615;Dbxref=NCBI_GP:UUF02064.1;Name=UUF02064.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171666.1;locus_tag=NDY25_19615;product=heme lyase CcmF/NrfE family subunit;protein_id=UUF02064.1;transl_table=11 CP098604.1 Genbank gene 4592254 4592724 . - . ID=gene-NDY25_19620;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=NDY25_19620 CP098604.1 Protein Homology CDS 4592254 4592724 . - 0 ID=cds-UUF02065.1;Parent=gene-NDY25_19620;Dbxref=NCBI_GP:UUF02065.1;Name=UUF02065.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503607.1;locus_tag=NDY25_19620;product=cytochrome c maturation protein CcmE;protein_id=UUF02065.1;transl_table=11 CP098604.1 Genbank gene 4592721 4592894 . - . ID=gene-NDY25_19625;Name=NDY25_19625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19625 CP098604.1 Protein Homology CDS 4592721 4592894 . - 0 ID=cds-UUF02066.1;Parent=gene-NDY25_19625;Dbxref=NCBI_GP:UUF02066.1;Name=UUF02066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005913150.1;locus_tag=NDY25_19625;product=heme exporter protein CcmD;protein_id=UUF02066.1;transl_table=11 CP098604.1 Genbank gene 4592891 4593643 . - . ID=gene-NDY25_19630;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=NDY25_19630 CP098604.1 Protein Homology CDS 4592891 4593643 . - 0 ID=cds-UUF02067.1;Parent=gene-NDY25_19630;Dbxref=NCBI_GP:UUF02067.1;Name=UUF02067.1;Ontology_term=GO:0015886,GO:0015232,GO:0016020;gbkey=CDS;gene=ccmC;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171667.1;locus_tag=NDY25_19630;product=heme ABC transporter permease CcmC;protein_id=UUF02067.1;transl_table=11 CP098604.1 Genbank gene 4593773 4594468 . - . ID=gene-NDY25_19635;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=NDY25_19635 CP098604.1 Protein Homology CDS 4593773 4594468 . - 0 ID=cds-UUF02068.1;Parent=gene-NDY25_19635;Dbxref=NCBI_GP:UUF02068.1;Name=UUF02068.1;Ontology_term=GO:0015886,GO:0015232;gbkey=CDS;gene=ccmB;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808060.1;locus_tag=NDY25_19635;product=heme exporter protein CcmB;protein_id=UUF02068.1;transl_table=11 CP098604.1 Genbank gene 4594465 4595109 . - . ID=gene-NDY25_19640;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=NDY25_19640 CP098604.1 Protein Homology CDS 4594465 4595109 . - 0 ID=cds-UUF02069.1;Parent=gene-NDY25_19640;Dbxref=NCBI_GP:UUF02069.1;Name=UUF02069.1;Ontology_term=GO:0015886,GO:0015439,GO:0043190;gbkey=CDS;gene=ccmA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type heme transporter activity|0015439||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007971018.1;locus_tag=NDY25_19640;product=heme ABC exporter ATP-binding protein CcmA;protein_id=UUF02069.1;transl_table=11 CP098604.1 Genbank gene 4595326 4596474 . + . ID=gene-NDY25_19645;Name=NDY25_19645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19645 CP098604.1 Protein Homology CDS 4595326 4596474 . + 0 ID=cds-UUF02070.1;Parent=gene-NDY25_19645;Dbxref=NCBI_GP:UUF02070.1;Name=UUF02070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964632.1;locus_tag=NDY25_19645;product=pyridoxal phosphate-dependent aminotransferase;protein_id=UUF02070.1;transl_table=11 CP098604.1 Genbank gene 4596625 4597425 . + . ID=gene-NDY25_19650;Name=NDY25_19650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19650 CP098604.1 Protein Homology CDS 4596625 4597425 . + 0 ID=cds-UUF02071.1;Parent=gene-NDY25_19650;Dbxref=NCBI_GP:UUF02071.1;Name=UUF02071.1;Ontology_term=GO:0006807;gbkey=CDS;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347683.1;locus_tag=NDY25_19650;product=amidohydrolase;protein_id=UUF02071.1;transl_table=11 CP098604.1 Genbank gene 4597519 4598289 . - . ID=gene-NDY25_19655;Name=NDY25_19655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19655 CP098604.1 Protein Homology CDS 4597519 4598289 . - 0 ID=cds-UUF02072.1;Parent=gene-NDY25_19655;Dbxref=NCBI_GP:UUF02072.1;Name=UUF02072.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003487017.1;locus_tag=NDY25_19655;product=glutaminyl-peptide cyclotransferase;protein_id=UUF02072.1;transl_table=11 CP098604.1 Genbank gene 4598455 4598892 . + . ID=gene-NDY25_19660;Name=NDY25_19660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19660 CP098604.1 Protein Homology CDS 4598455 4598892 . + 0 ID=cds-UUF02073.1;Parent=gene-NDY25_19660;Dbxref=NCBI_GP:UUF02073.1;Name=UUF02073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158703.1;locus_tag=NDY25_19660;product=hypothetical protein;protein_id=UUF02073.1;transl_table=11 CP098604.1 Genbank gene 4599287 4600924 . - . ID=gene-NDY25_19665;Name=NDY25_19665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19665 CP098604.1 Protein Homology CDS 4599287 4600924 . - 0 ID=cds-UUF02074.1;Parent=gene-NDY25_19665;Dbxref=NCBI_GP:UUF02074.1;Name=UUF02074.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438191.1;locus_tag=NDY25_19665;product=pseudouridine synthase;protein_id=UUF02074.1;transl_table=11 CP098604.1 Genbank gene 4600917 4601879 . - . ID=gene-NDY25_19670;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=NDY25_19670 CP098604.1 Protein Homology CDS 4600917 4601879 . - 0 ID=cds-UUF02075.1;Parent=gene-NDY25_19670;Dbxref=NCBI_GP:UUF02075.1;Name=UUF02075.1;Ontology_term=GO:0007059,GO:0005515;gbkey=CDS;gene=scpB;go_function=protein binding|0005515||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237609.1;locus_tag=NDY25_19670;product=SMC-Scp complex subunit ScpB;protein_id=UUF02075.1;transl_table=11 CP098604.1 Genbank gene 4601893 4602798 . - . ID=gene-NDY25_19675;Name=NDY25_19675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19675 CP098604.1 Protein Homology CDS 4601893 4602798 . - 0 ID=cds-UUF02076.1;Parent=gene-NDY25_19675;Dbxref=NCBI_GP:UUF02076.1;Name=UUF02076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904542.1;locus_tag=NDY25_19675;product=segregation/condensation protein A;protein_id=UUF02076.1;transl_table=11 CP098604.1 Genbank gene 4603167 4603466 . + . ID=gene-NDY25_19680;Name=NDY25_19680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19680 CP098604.1 Protein Homology CDS 4603167 4603466 . + 0 ID=cds-UUF02077.1;Parent=gene-NDY25_19680;Dbxref=NCBI_GP:UUF02077.1;Name=UUF02077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503597.1;locus_tag=NDY25_19680;product=YciI family protein;protein_id=UUF02077.1;transl_table=11 CP098604.1 Genbank gene 4603463 4603732 . + . ID=gene-NDY25_19685;Name=NDY25_19685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19685 CP098604.1 Protein Homology CDS 4603463 4603732 . + 0 ID=cds-UUF02078.1;Parent=gene-NDY25_19685;Dbxref=NCBI_GP:UUF02078.1;Name=UUF02078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904540.1;locus_tag=NDY25_19685;product=BolA family transcriptional regulator;protein_id=UUF02078.1;transl_table=11 CP098604.1 Genbank gene 4604057 4605079 . + . ID=gene-NDY25_19690;Name=NDY25_19690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19690 CP098604.1 Protein Homology CDS 4604057 4605079 . + 0 ID=cds-UUF02079.1;Parent=gene-NDY25_19690;Dbxref=NCBI_GP:UUF02079.1;Name=UUF02079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451820.1;locus_tag=NDY25_19690;product=LacI family transcriptional regulator;protein_id=UUF02079.1;transl_table=11 CP098604.1 Genbank gene 4605234 4608212 . + . ID=gene-NDY25_19695;Name=NDY25_19695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19695 CP098604.1 Protein Homology CDS 4605234 4608212 . + 0 ID=cds-UUF02080.1;Parent=gene-NDY25_19695;Dbxref=NCBI_GP:UUF02080.1;Name=UUF02080.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172742.1;locus_tag=NDY25_19695;product=TonB-dependent receptor;protein_id=UUF02080.1;transl_table=11 CP098604.1 Genbank gene 4608313 4609950 . + . ID=gene-NDY25_19700;Name=NDY25_19700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19700 CP098604.1 Protein Homology CDS 4608313 4609950 . + 0 ID=cds-UUF02081.1;Parent=gene-NDY25_19700;Dbxref=NCBI_GP:UUF02081.1;Name=UUF02081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451818.1;locus_tag=NDY25_19700;product=hypothetical protein;protein_id=UUF02081.1;transl_table=11 CP098604.1 Genbank gene 4609954 4611312 . + . ID=gene-NDY25_19705;Name=NDY25_19705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19705 CP098604.1 Protein Homology CDS 4609954 4611312 . + 0 ID=cds-UUF02082.1;Parent=gene-NDY25_19705;Dbxref=NCBI_GP:UUF02082.1;Name=UUF02082.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157813.1;locus_tag=NDY25_19705;product=sugar ABC transporter substrate-binding protein;protein_id=UUF02082.1;transl_table=11 CP098604.1 Genbank gene 4611309 4612193 . + . ID=gene-NDY25_19710;Name=NDY25_19710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19710 CP098604.1 Protein Homology CDS 4611309 4612193 . + 0 ID=cds-UUF02083.1;Parent=gene-NDY25_19710;Dbxref=NCBI_GP:UUF02083.1;Name=UUF02083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157814.1;locus_tag=NDY25_19710;product=sugar ABC transporter permease;protein_id=UUF02083.1;transl_table=11 CP098604.1 Genbank gene 4612190 4613026 . + . ID=gene-NDY25_19715;Name=NDY25_19715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19715 CP098604.1 Protein Homology CDS 4612190 4613026 . + 0 ID=cds-UUF02084.1;Parent=gene-NDY25_19715;Dbxref=NCBI_GP:UUF02084.1;Name=UUF02084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017357393.1;locus_tag=NDY25_19715;product=carbohydrate ABC transporter permease;protein_id=UUF02084.1;transl_table=11 CP098604.1 Genbank gene 4613053 4616190 . + . ID=gene-NDY25_19720;Name=NDY25_19720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19720 CP098604.1 Protein Homology CDS 4613053 4616190 . + 0 ID=cds-UUF02085.1;Parent=gene-NDY25_19720;Dbxref=NCBI_GP:UUF02085.1;Name=UUF02085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163390.1;locus_tag=NDY25_19720;product=discoidin domain-containing protein;protein_id=UUF02085.1;transl_table=11 CP098604.1 Genbank gene 4616250 4617173 . + . ID=gene-NDY25_19725;Name=NDY25_19725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19725 CP098604.1 Protein Homology CDS 4616250 4617173 . + 0 ID=cds-UUF02086.1;Parent=gene-NDY25_19725;Dbxref=NCBI_GP:UUF02086.1;Name=UUF02086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904717.1;locus_tag=NDY25_19725;product=endonuclease/exonuclease/phosphatase family protein;protein_id=UUF02086.1;transl_table=11 CP098604.1 Genbank gene 4617303 4618523 . - . ID=gene-NDY25_19730;Name=NDY25_19730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19730 CP098604.1 Protein Homology CDS 4617303 4618523 . - 0 ID=cds-UUF02087.1;Parent=gene-NDY25_19730;Dbxref=NCBI_GP:UUF02087.1;Name=UUF02087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237613.1;locus_tag=NDY25_19730;product=TraB/GumN family protein;protein_id=UUF02087.1;transl_table=11 CP098604.1 Genbank gene 4618528 4619055 . - . ID=gene-NDY25_19735;Name=NDY25_19735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19735 CP098604.1 Protein Homology CDS 4618528 4619055 . - 0 ID=cds-UUF02088.1;Parent=gene-NDY25_19735;Dbxref=NCBI_GP:UUF02088.1;Name=UUF02088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507899.1;locus_tag=NDY25_19735;product=GNAT family N-acetyltransferase;protein_id=UUF02088.1;transl_table=11 CP098604.1 Genbank gene 4619060 4619944 . - . ID=gene-NDY25_19740;Name=NDY25_19740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19740 CP098604.1 Protein Homology CDS 4619060 4619944 . - 0 ID=cds-UUF02089.1;Parent=gene-NDY25_19740;Dbxref=NCBI_GP:UUF02089.1;Name=UUF02089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451810.1;locus_tag=NDY25_19740;product=carbon-nitrogen hydrolase;protein_id=UUF02089.1;transl_table=11 CP098604.1 Genbank gene 4620024 4621058 . - . ID=gene-NDY25_19745;Name=NDY25_19745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19745 CP098604.1 Protein Homology CDS 4620024 4621058 . - 0 ID=cds-UUF02090.1;Parent=gene-NDY25_19745;Dbxref=NCBI_GP:UUF02090.1;Name=UUF02090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010372979.1;locus_tag=NDY25_19745;product=agmatine deiminase family protein;protein_id=UUF02090.1;transl_table=11 CP098604.1 Genbank gene 4621150 4621485 . - . ID=gene-NDY25_19750;Name=NDY25_19750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19750 CP098604.1 Protein Homology CDS 4621150 4621485 . - 0 ID=cds-UUF02091.1;Parent=gene-NDY25_19750;Dbxref=NCBI_GP:UUF02091.1;Name=UUF02091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451808.1;locus_tag=NDY25_19750;product=hypothetical protein;protein_id=UUF02091.1;transl_table=11 CP098604.1 Genbank gene 4621744 4621869 . - . ID=gene-NDY25_19755;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=NDY25_19755 CP098604.1 Protein Homology CDS 4621744 4621869 . - 0 ID=cds-UUF02092.1;Parent=gene-NDY25_19755;Dbxref=NCBI_GP:UUF02092.1;Name=UUF02092.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011098120.1;locus_tag=NDY25_19755;product=type B 50S ribosomal protein L36;protein_id=UUF02092.1;transl_table=11 CP098604.1 Genbank gene 4622042 4622725 . + . ID=gene-NDY25_19760;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=NDY25_19760 CP098604.1 Protein Homology CDS 4622042 4622725 . + 0 ID=cds-UUF02093.1;Parent=gene-NDY25_19760;Dbxref=NCBI_GP:UUF02093.1;Name=UUF02093.1;Ontology_term=GO:0015949,GO:0004127;gbkey=CDS;gene=cmk;go_function=cytidylate kinase activity|0004127||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258877.1;locus_tag=NDY25_19760;product=(d)CMP kinase;protein_id=UUF02093.1;transl_table=11 CP098604.1 Genbank gene 4622910 4624598 . + . ID=gene-NDY25_19765;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=NDY25_19765 CP098604.1 Protein Homology CDS 4622910 4624598 . + 0 ID=cds-UUF02094.1;Parent=gene-NDY25_19765;Dbxref=NCBI_GP:UUF02094.1;Name=UUF02094.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019183099.1;locus_tag=NDY25_19765;product=30S ribosomal protein S1;protein_id=UUF02094.1;transl_table=11 CP098604.1 Genbank gene 4624688 4624999 . + . ID=gene-NDY25_19770;Name=NDY25_19770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19770 CP098604.1 Protein Homology CDS 4624688 4624999 . + 0 ID=cds-UUF02095.1;Parent=gene-NDY25_19770;Dbxref=NCBI_GP:UUF02095.1;Name=UUF02095.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408447.1;locus_tag=NDY25_19770;product=integration host factor subunit beta;protein_id=UUF02095.1;transl_table=11 CP098604.1 Genbank gene 4625067 4625372 . + . ID=gene-NDY25_19775;Name=NDY25_19775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19775 CP098604.1 Protein Homology CDS 4625067 4625372 . + 0 ID=cds-UUF02096.1;Parent=gene-NDY25_19775;Dbxref=NCBI_GP:UUF02096.1;Name=UUF02096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451180.1;locus_tag=NDY25_19775;product=LapA family protein;protein_id=UUF02096.1;transl_table=11 CP098604.1 Genbank gene 4625379 4626557 . + . ID=gene-NDY25_19780;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=NDY25_19780 CP098604.1 Protein Homology CDS 4625379 4626557 . + 0 ID=cds-UUF02097.1;Parent=gene-NDY25_19780;Dbxref=NCBI_GP:UUF02097.1;Name=UUF02097.1;gbkey=CDS;gene=lapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003468665.1;locus_tag=NDY25_19780;product=lipopolysaccharide assembly protein LapB;protein_id=UUF02097.1;transl_table=11 CP098604.1 Genbank gene 4626557 4627531 . + . ID=gene-NDY25_19785;Name=NDY25_19785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19785 CP098604.1 Protein Homology CDS 4626557 4627531 . + 0 ID=cds-UUF02098.1;Parent=gene-NDY25_19785;Dbxref=NCBI_GP:UUF02098.1;Name=UUF02098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507893.1;locus_tag=NDY25_19785;product=glycosyltransferase family 4 protein;protein_id=UUF02098.1;transl_table=11 CP098604.1 Genbank gene 4627545 4629452 . + . ID=gene-NDY25_19790;Name=NDY25_19790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19790 CP098604.1 Protein Homology CDS 4627545 4629452 . + 0 ID=cds-UUF02099.1;Parent=gene-NDY25_19790;Dbxref=NCBI_GP:UUF02099.1;Name=UUF02099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300130.1;locus_tag=NDY25_19790;product=polysaccharide biosynthesis protein;protein_id=UUF02099.1;transl_table=11 CP098604.1 Genbank gene 4629452 4630345 . + . ID=gene-NDY25_19795;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=NDY25_19795 CP098604.1 Protein Homology CDS 4629452 4630345 . + 0 ID=cds-UUF02100.1;Parent=gene-NDY25_19795;Dbxref=NCBI_GP:UUF02100.1;Name=UUF02100.1;Ontology_term=GO:0009225,GO:0003983;gbkey=CDS;gene=galU;go_function=UTP:glucose-1-phosphate uridylyltransferase activity|0003983||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017157591.1;locus_tag=NDY25_19795;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=UUF02100.1;transl_table=11 CP098604.1 Genbank gene 4630521 4632377 . + . ID=gene-NDY25_19800;Name=NDY25_19800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19800 CP098604.1 Protein Homology CDS 4630521 4632377 . + 0 ID=cds-UUF02101.1;Parent=gene-NDY25_19800;Dbxref=NCBI_GP:UUF02101.1;Name=UUF02101.1;Ontology_term=GO:0006812,GO:1902600,GO:0005451,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=monovalent cation:proton antiporter activity|0005451||IEA;go_process=cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489640.1;locus_tag=NDY25_19800;product=monovalent cation:proton antiporter-2 (CPA2) family protein;protein_id=UUF02101.1;transl_table=11 CP098604.1 Genbank gene 4632498 4632818 . - . ID=gene-NDY25_19805;Name=NDY25_19805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19805 CP098604.1 Protein Homology CDS 4632498 4632818 . - 0 ID=cds-UUF02102.1;Parent=gene-NDY25_19805;Dbxref=NCBI_GP:UUF02102.1;Name=UUF02102.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011258887.1;locus_tag=NDY25_19805;product=DUF1244 domain-containing protein;protein_id=UUF02102.1;transl_table=11 CP098604.1 Genbank gene 4632868 4633752 . + . ID=gene-NDY25_19810;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=NDY25_19810 CP098604.1 Protein Homology CDS 4632868 4633752 . + 0 ID=cds-UUF02103.1;Parent=gene-NDY25_19810;Dbxref=NCBI_GP:UUF02103.1;Name=UUF02103.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992303.1;locus_tag=NDY25_19810;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=UUF02103.1;transl_table=11 CP098604.1 Genbank gene 4633845 4635302 . + . ID=gene-NDY25_19815;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=NDY25_19815 CP098604.1 Protein Homology CDS 4633845 4635302 . + 0 ID=cds-UUF02104.1;Parent=gene-NDY25_19815;Dbxref=NCBI_GP:UUF02104.1;Name=UUF02104.1;Ontology_term=GO:0009152,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004657166.1;locus_tag=NDY25_19815;product=IMP dehydrogenase;protein_id=UUF02104.1;transl_table=11 CP098604.1 Genbank gene 4635429 4636994 . + . ID=gene-NDY25_19820;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=NDY25_19820 CP098604.1 Protein Homology CDS 4635429 4636994 . + 0 ID=cds-UUF02105.1;Parent=gene-NDY25_19820;Dbxref=NCBI_GP:UUF02105.1;Name=UUF02105.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012510808.1;locus_tag=NDY25_19820;product=glutamine-hydrolyzing GMP synthase;protein_id=UUF02105.1;transl_table=11 CP098604.1 Genbank gene 4637302 4638504 . + . ID=gene-NDY25_19825;Name=NDY25_19825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19825 CP098604.1 Protein Homology CDS 4637302 4638504 . + 0 ID=cds-UUF02106.1;Parent=gene-NDY25_19825;Dbxref=NCBI_GP:UUF02106.1;Name=UUF02106.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011666563.1;locus_tag=NDY25_19825;product=tyrosine-type recombinase/integrase;protein_id=UUF02106.1;transl_table=11 CP098604.1 Genbank gene 4638785 4638967 . - . ID=gene-NDY25_19830;Name=NDY25_19830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19830 CP098604.1 Protein Homology CDS 4638785 4638967 . - 0 ID=cds-UUF02107.1;Parent=gene-NDY25_19830;Dbxref=NCBI_GP:UUF02107.1;Name=UUF02107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003472506.1;locus_tag=NDY25_19830;product=hypothetical protein;protein_id=UUF02107.1;transl_table=11 CP098604.1 Genbank gene 4639616 4640401 . - . ID=gene-NDY25_19835;Name=NDY25_19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19835 CP098604.1 Protein Homology CDS 4639616 4640401 . - 0 ID=cds-UUF02108.1;Parent=gene-NDY25_19835;Dbxref=NCBI_GP:UUF02108.1;Name=UUF02108.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: protein motif:HMM:NF013594.2;locus_tag=NDY25_19835;product=M48 family metalloprotease;protein_id=UUF02108.1;transl_table=11 CP098604.1 Genbank gene 4640398 4640862 . - . ID=gene-NDY25_19840;Name=NDY25_19840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19840 CP098604.1 Protein Homology CDS 4640398 4640862 . - 0 ID=cds-UUF02109.1;Parent=gene-NDY25_19840;Dbxref=NCBI_GP:UUF02109.1;Name=UUF02109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450103.1;locus_tag=NDY25_19840;product=hypothetical protein;protein_id=UUF02109.1;transl_table=11 CP098604.1 Genbank pseudogene 4640995 4641093 . - . ID=gene-NDY25_19845;Name=NDY25_19845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19845;pseudo=true CP098604.1 Protein Homology CDS 4640995 4641093 . - 0 ID=cds-NDY25_19845;Parent=gene-NDY25_19845;Note=incomplete%3B partial on complete genome%3B missing N-terminus and C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1;locus_tag=NDY25_19845;product=recombinase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4641147 4641425 . + . ID=gene-NDY25_19850;Name=NDY25_19850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19850 CP098604.1 Protein Homology CDS 4641147 4641425 . + 0 ID=cds-UUF02110.1;Parent=gene-NDY25_19850;Dbxref=NCBI_GP:UUF02110.1;Name=UUF02110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005918295.1;locus_tag=NDY25_19850;product=hypothetical protein;protein_id=UUF02110.1;transl_table=11 CP098604.1 Genbank pseudogene 4641610 4641850 . + . ID=gene-NDY25_19855;Name=NDY25_19855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19855;pseudo=true CP098604.1 Protein Homology CDS 4641610 4641850 . + 0 ID=cds-NDY25_19855;Parent=gene-NDY25_19855;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159820.1;locus_tag=NDY25_19855;product=KfrA protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4642482 4643501 . + . ID=gene-NDY25_19860;Name=NDY25_19860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19860 CP098604.1 Protein Homology CDS 4642482 4643501 . + 0 ID=cds-UUF02111.1;Parent=gene-NDY25_19860;Dbxref=NCBI_GP:UUF02111.1;Name=UUF02111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974920.1;locus_tag=NDY25_19860;product=ParA family protein;protein_id=UUF02111.1;transl_table=11 CP098604.1 Genbank gene 4643666 4644073 . + . ID=gene-NDY25_19865;Name=NDY25_19865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19865 CP098604.1 GeneMarkS-2+ CDS 4643666 4644073 . + 0 ID=cds-UUF02112.1;Parent=gene-NDY25_19865;Dbxref=NCBI_GP:UUF02112.1;Name=UUF02112.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19865;product=hypothetical protein;protein_id=UUF02112.1;transl_table=11 CP098604.1 Genbank gene 4644555 4644683 . + . ID=gene-NDY25_19870;Name=NDY25_19870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19870 CP098604.1 Protein Homology CDS 4644555 4644683 . + 0 ID=cds-UUF04727.1;Parent=gene-NDY25_19870;Dbxref=NCBI_GP:UUF04727.1;Name=UUF04727.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016876.2;locus_tag=NDY25_19870;product=hypothetical protein;protein_id=UUF04727.1;transl_table=11 CP098604.1 Genbank gene 4644872 4646016 . - . ID=gene-NDY25_19875;Name=NDY25_19875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19875 CP098604.1 Protein Homology CDS 4645779 4646016 . - 0 ID=cds-UUF02113.1;Parent=gene-NDY25_19875;Dbxref=NCBI_GP:UUF02113.1;Name=UUF02113.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_19875;product=IS3 family transposase;protein_id=UUF02113.1;transl_table=11 CP098604.1 Protein Homology CDS 4644872 4645779 . - 2 ID=cds-UUF02113.1;Parent=gene-NDY25_19875;Dbxref=NCBI_GP:UUF02113.1;Name=UUF02113.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_19875;product=IS3 family transposase;protein_id=UUF02113.1;transl_table=11 CP098604.1 Genbank gene 4646054 4649332 . + . ID=gene-NDY25_19880;Name=NDY25_19880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19880 CP098604.1 Protein Homology CDS 4646054 4649332 . + 0 ID=cds-UUF02114.1;Parent=gene-NDY25_19880;Dbxref=NCBI_GP:UUF02114.1;Name=UUF02114.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051651.1;locus_tag=NDY25_19880;product=RHS repeat protein;protein_id=UUF02114.1;transl_table=11 CP098604.1 Genbank gene 4649423 4650403 . - . ID=gene-NDY25_19885;Name=NDY25_19885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19885 CP098604.1 Protein Homology CDS 4649423 4650403 . - 0 ID=cds-UUF02115.1;Parent=gene-NDY25_19885;Dbxref=NCBI_GP:UUF02115.1;Name=UUF02115.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_19885;product=IS5 family transposase;protein_id=UUF02115.1;transl_table=11 CP098604.1 Genbank gene 4650406 4650801 . + . ID=gene-NDY25_19890;Name=NDY25_19890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19890 CP098604.1 Protein Homology CDS 4650406 4650801 . + 0 ID=cds-UUF04728.1;Parent=gene-NDY25_19890;Dbxref=NCBI_GP:UUF04728.1;Name=UUF04728.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025581.2;locus_tag=NDY25_19890;product=DUF4329 domain-containing protein;protein_id=UUF04728.1;transl_table=11 CP098604.1 Genbank gene 4650798 4651121 . + . ID=gene-NDY25_19895;Name=NDY25_19895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19895 CP098604.1 Protein Homology CDS 4650798 4651121 . + 0 ID=cds-UUF02116.1;Parent=gene-NDY25_19895;Dbxref=NCBI_GP:UUF02116.1;Name=UUF02116.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463343.1;locus_tag=NDY25_19895;product=hypothetical protein;protein_id=UUF02116.1;transl_table=11 CP098604.1 Genbank pseudogene 4651123 4652700 . + . ID=gene-NDY25_19900;Name=NDY25_19900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19900;pseudo=true CP098604.1 Protein Homology CDS 4651123 4652700 . + 0 ID=cds-NDY25_19900;Parent=gene-NDY25_19900;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269888.1;locus_tag=NDY25_19900;product=RHS repeat-associated core domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 4653746 4654430 . - . ID=gene-NDY25_19905;Name=NDY25_19905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_19905;pseudo=true CP098604.1 Protein Homology CDS 4653746 4654430 . - 0 ID=cds-NDY25_19905;Parent=gene-NDY25_19905;Note=frameshifted%3B internal stop%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174107.1;locus_tag=NDY25_19905;product=site-specific integrase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4655119 4655478 . - . ID=gene-NDY25_19910;Name=NDY25_19910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19910 CP098604.1 GeneMarkS-2+ CDS 4655119 4655478 . - 0 ID=cds-UUF02117.1;Parent=gene-NDY25_19910;Dbxref=NCBI_GP:UUF02117.1;Name=UUF02117.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19910;product=hypothetical protein;protein_id=UUF02117.1;transl_table=11 CP098604.1 Genbank gene 4655652 4656760 . - . ID=gene-NDY25_19915;Name=NDY25_19915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19915 CP098604.1 Protein Homology CDS 4656499 4656760 . - 0 ID=cds-UUF02118.1;Parent=gene-NDY25_19915;Dbxref=NCBI_GP:UUF02118.1;Name=UUF02118.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_19915;product=IS3 family transposase;protein_id=UUF02118.1;transl_table=11 CP098604.1 Protein Homology CDS 4655652 4656499 . - 2 ID=cds-UUF02118.1;Parent=gene-NDY25_19915;Dbxref=NCBI_GP:UUF02118.1;Name=UUF02118.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_19915;product=IS3 family transposase;protein_id=UUF02118.1;transl_table=11 CP098604.1 Genbank gene 4656779 4657033 . - . ID=gene-NDY25_19920;Name=NDY25_19920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19920 CP098604.1 GeneMarkS-2+ CDS 4656779 4657033 . - 0 ID=cds-UUF02119.1;Parent=gene-NDY25_19920;Dbxref=NCBI_GP:UUF02119.1;Name=UUF02119.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19920;product=hypothetical protein;protein_id=UUF02119.1;transl_table=11 CP098604.1 Genbank gene 4657110 4664312 . - . ID=gene-NDY25_19925;Name=NDY25_19925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19925 CP098604.1 GeneMarkS-2+ CDS 4657110 4664312 . - 0 ID=cds-UUF02120.1;Parent=gene-NDY25_19925;Dbxref=NCBI_GP:UUF02120.1;Name=UUF02120.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19925;product=hypothetical protein;protein_id=UUF02120.1;transl_table=11 CP098604.1 Genbank gene 4664323 4664814 . - . ID=gene-NDY25_19930;Name=NDY25_19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19930 CP098604.1 GeneMarkS-2+ CDS 4664323 4664814 . - 0 ID=cds-UUF02121.1;Parent=gene-NDY25_19930;Dbxref=NCBI_GP:UUF02121.1;Name=UUF02121.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19930;product=hypothetical protein;protein_id=UUF02121.1;transl_table=11 CP098604.1 Genbank gene 4664768 4665127 . - . ID=gene-NDY25_19935;Name=NDY25_19935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19935 CP098604.1 GeneMarkS-2+ CDS 4664768 4665127 . - 0 ID=cds-UUF02122.1;Parent=gene-NDY25_19935;Dbxref=NCBI_GP:UUF02122.1;Name=UUF02122.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19935;product=hypothetical protein;protein_id=UUF02122.1;transl_table=11 CP098604.1 Genbank gene 4665124 4668726 . - . ID=gene-NDY25_19940;Name=NDY25_19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19940 CP098604.1 GeneMarkS-2+ CDS 4665124 4668726 . - 0 ID=cds-UUF02123.1;Parent=gene-NDY25_19940;Dbxref=NCBI_GP:UUF02123.1;Name=UUF02123.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19940;product=hypothetical protein;protein_id=UUF02123.1;transl_table=11 CP098604.1 Genbank gene 4668917 4669312 . - . ID=gene-NDY25_19945;Name=NDY25_19945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19945 CP098604.1 GeneMarkS-2+ CDS 4668917 4669312 . - 0 ID=cds-UUF02124.1;Parent=gene-NDY25_19945;Dbxref=NCBI_GP:UUF02124.1;Name=UUF02124.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19945;product=hypothetical protein;protein_id=UUF02124.1;transl_table=11 CP098604.1 Genbank gene 4669593 4669940 . - . ID=gene-NDY25_19950;Name=NDY25_19950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19950 CP098604.1 GeneMarkS-2+ CDS 4669593 4669940 . - 0 ID=cds-UUF02125.1;Parent=gene-NDY25_19950;Dbxref=NCBI_GP:UUF02125.1;Name=UUF02125.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_19950;product=hypothetical protein;protein_id=UUF02125.1;transl_table=11 CP098604.1 Genbank gene 4670252 4672363 . - . ID=gene-NDY25_19955;Name=NDY25_19955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19955 CP098604.1 Protein Homology CDS 4670252 4672363 . - 0 ID=cds-UUF02126.1;Parent=gene-NDY25_19955;Dbxref=NCBI_GP:UUF02126.1;Name=UUF02126.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155045.1;locus_tag=NDY25_19955;product=methyl-accepting chemotaxis protein;protein_id=UUF02126.1;transl_table=11 CP098604.1 Genbank gene 4672637 4673821 . - . ID=gene-NDY25_19960;Name=NDY25_19960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19960 CP098604.1 Protein Homology CDS 4672637 4673821 . - 0 ID=cds-UUF02127.1;Parent=gene-NDY25_19960;Dbxref=NCBI_GP:UUF02127.1;Name=UUF02127.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450353.1;locus_tag=NDY25_19960;product=FAD-dependent monooxygenase;protein_id=UUF02127.1;transl_table=11 CP098604.1 Genbank gene 4673858 4674322 . - . ID=gene-NDY25_19965;Name=NDY25_19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19965 CP098604.1 Protein Homology CDS 4673858 4674322 . - 0 ID=cds-UUF02128.1;Parent=gene-NDY25_19965;Dbxref=NCBI_GP:UUF02128.1;Name=UUF02128.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964087.1;locus_tag=NDY25_19965;product=MarR family transcriptional regulator;protein_id=UUF02128.1;transl_table=11 CP098604.1 Genbank gene 4674794 4677652 . + . ID=gene-NDY25_19970;Name=NDY25_19970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19970 CP098604.1 Protein Homology CDS 4674794 4677652 . + 0 ID=cds-UUF02129.1;Parent=gene-NDY25_19970;Dbxref=NCBI_GP:UUF02129.1;Name=UUF02129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155050.1;locus_tag=NDY25_19970;product=PAS domain-containing protein;protein_id=UUF02129.1;transl_table=11 CP098604.1 Genbank gene 4677692 4678036 . - . ID=gene-NDY25_19975;Name=NDY25_19975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19975 CP098604.1 Protein Homology CDS 4677692 4678036 . - 0 ID=cds-UUF04729.1;Parent=gene-NDY25_19975;Dbxref=NCBI_GP:UUF04729.1;Name=UUF04729.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155051.1;locus_tag=NDY25_19975;product=response regulator;protein_id=UUF04729.1;transl_table=11 CP098604.1 Genbank gene 4678293 4679807 . + . ID=gene-NDY25_19980;Name=NDY25_19980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19980 CP098604.1 Protein Homology CDS 4678293 4679807 . + 0 ID=cds-UUF02130.1;Parent=gene-NDY25_19980;Dbxref=NCBI_GP:UUF02130.1;Name=UUF02130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964093.1;locus_tag=NDY25_19980;product=AAA family ATPase;protein_id=UUF02130.1;transl_table=11 CP098604.1 Genbank gene 4679794 4681866 . + . ID=gene-NDY25_19985;Name=NDY25_19985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19985 CP098604.1 Protein Homology CDS 4679794 4681866 . + 0 ID=cds-UUF02131.1;Parent=gene-NDY25_19985;Dbxref=NCBI_GP:UUF02131.1;Name=UUF02131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964094.1;locus_tag=NDY25_19985;product=ATP-binding protein;protein_id=UUF02131.1;transl_table=11 CP098604.1 Genbank gene 4682568 4683290 . - . ID=gene-NDY25_19990;Name=NDY25_19990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19990 CP098604.1 Protein Homology CDS 4682568 4683290 . - 0 ID=cds-UUF02132.1;Parent=gene-NDY25_19990;Dbxref=NCBI_GP:UUF02132.1;Name=UUF02132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017167280.1;locus_tag=NDY25_19990;product=tetratricopeptide repeat protein;protein_id=UUF02132.1;transl_table=11 CP098604.1 Genbank gene 4683284 4683766 . - . ID=gene-NDY25_19995;Name=NDY25_19995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_19995 CP098604.1 Protein Homology CDS 4683284 4683766 . - 0 ID=cds-UUF02133.1;Parent=gene-NDY25_19995;Dbxref=NCBI_GP:UUF02133.1;Name=UUF02133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904802.1;locus_tag=NDY25_19995;product=cytochrome c-type biogenesis protein CcmH;protein_id=UUF02133.1;transl_table=11 CP098604.1 Genbank gene 4683766 4684308 . - . ID=gene-NDY25_20000;Name=NDY25_20000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20000 CP098604.1 Protein Homology CDS 4683766 4684308 . - 0 ID=cds-UUF02134.1;Parent=gene-NDY25_20000;Dbxref=NCBI_GP:UUF02134.1;Name=UUF02134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452994.1;locus_tag=NDY25_20000;product=DsbE family thiol:disulfide interchange protein;protein_id=UUF02134.1;transl_table=11 CP098604.1 Genbank gene 4684305 4686293 . - . ID=gene-NDY25_20005;Name=NDY25_20005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20005 CP098604.1 Protein Homology CDS 4684305 4686293 . - 0 ID=cds-UUF02135.1;Parent=gene-NDY25_20005;Dbxref=NCBI_GP:UUF02135.1;Name=UUF02135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452993.1;locus_tag=NDY25_20005;product=heme lyase CcmF/NrfE family subunit;protein_id=UUF02135.1;transl_table=11 CP098604.1 Genbank gene 4686357 4686827 . - . ID=gene-NDY25_20010;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=NDY25_20010 CP098604.1 Protein Homology CDS 4686357 4686827 . - 0 ID=cds-UUF02136.1;Parent=gene-NDY25_20010;Dbxref=NCBI_GP:UUF02136.1;Name=UUF02136.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155058.1;locus_tag=NDY25_20010;product=cytochrome c maturation protein CcmE;protein_id=UUF02136.1;transl_table=11 CP098604.1 Genbank gene 4686824 4687030 . - . ID=gene-NDY25_20015;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=NDY25_20015 CP098604.1 Protein Homology CDS 4686824 4687030 . - 0 ID=cds-UUF02137.1;Parent=gene-NDY25_20015;Dbxref=NCBI_GP:UUF02137.1;Name=UUF02137.1;Ontology_term=GO:0015886,GO:0017004,GO:0016021;gbkey=CDS;gene=ccmD;go_component=integral component of membrane|0016021||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155059.1;locus_tag=NDY25_20015;product=heme exporter protein CcmD;protein_id=UUF02137.1;transl_table=11 CP098604.1 Genbank gene 4687027 4687785 . - . ID=gene-NDY25_20020;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=NDY25_20020 CP098604.1 Protein Homology CDS 4687027 4687785 . - 0 ID=cds-UUF02138.1;Parent=gene-NDY25_20020;Dbxref=NCBI_GP:UUF02138.1;Name=UUF02138.1;Ontology_term=GO:0015886,GO:0015232,GO:0016020;gbkey=CDS;gene=ccmC;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302345.1;locus_tag=NDY25_20020;product=heme ABC transporter permease CcmC;protein_id=UUF02138.1;transl_table=11 CP098604.1 Genbank gene 4687796 4689124 . - . ID=gene-NDY25_20025;Name=NDY25_20025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20025 CP098604.1 Protein Homology CDS 4687796 4689124 . - 0 ID=cds-UUF02139.1;Parent=gene-NDY25_20025;Dbxref=NCBI_GP:UUF02139.1;Name=UUF02139.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010363686.1;locus_tag=NDY25_20025;product=S8 family serine peptidase;protein_id=UUF02139.1;transl_table=11 CP098604.1 Genbank gene 4689121 4689780 . - . ID=gene-NDY25_20030;Name=NDY25_20030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20030 CP098604.1 Protein Homology CDS 4689121 4689780 . - 0 ID=cds-UUF02140.1;Parent=gene-NDY25_20030;Dbxref=NCBI_GP:UUF02140.1;Name=UUF02140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169443.1;locus_tag=NDY25_20030;product=zf-HC2 domain-containing protein;protein_id=UUF02140.1;transl_table=11 CP098604.1 Genbank gene 4689777 4690358 . - . ID=gene-NDY25_20035;Name=NDY25_20035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20035 CP098604.1 Protein Homology CDS 4689777 4690358 . - 0 ID=cds-UUF02141.1;Parent=gene-NDY25_20035;Dbxref=NCBI_GP:UUF02141.1;Name=UUF02141.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919646.1;locus_tag=NDY25_20035;product=sigma-70 family RNA polymerase sigma factor;protein_id=UUF02141.1;transl_table=11 CP098604.1 Genbank gene 4690422 4691129 . - . ID=gene-NDY25_20040;Name=NDY25_20040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20040 CP098604.1 Protein Homology CDS 4690422 4691129 . - 0 ID=cds-UUF02142.1;Parent=gene-NDY25_20040;Dbxref=NCBI_GP:UUF02142.1;Name=UUF02142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914841.1;locus_tag=NDY25_20040;product=hypothetical protein;protein_id=UUF02142.1;transl_table=11 CP098604.1 Genbank gene 4691469 4691858 . - . ID=gene-NDY25_20045;Name=NDY25_20045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20045 CP098604.1 Protein Homology CDS 4691469 4691858 . - 0 ID=cds-UUF02143.1;Parent=gene-NDY25_20045;Dbxref=NCBI_GP:UUF02143.1;Name=UUF02143.1;Ontology_term=GO:0009055,GO:0020037;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016902092.1;locus_tag=NDY25_20045;product=c-type cytochrome;protein_id=UUF02143.1;transl_table=11 CP098604.1 Genbank gene 4691884 4693236 . - . ID=gene-NDY25_20050;Name=NDY25_20050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20050 CP098604.1 Protein Homology CDS 4691884 4693236 . - 0 ID=cds-UUF02144.1;Parent=gene-NDY25_20050;Dbxref=NCBI_GP:UUF02144.1;Name=UUF02144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914948.1;locus_tag=NDY25_20050;product=cytochrome C;protein_id=UUF02144.1;transl_table=11 CP098604.1 Genbank gene 4693308 4693922 . - . ID=gene-NDY25_20055;Name=NDY25_20055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20055 CP098604.1 Protein Homology CDS 4693308 4693922 . - 0 ID=cds-UUF02145.1;Parent=gene-NDY25_20055;Dbxref=NCBI_GP:UUF02145.1;Name=UUF02145.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452984.1;locus_tag=NDY25_20055;product=cytochrome b;protein_id=UUF02145.1;transl_table=11 CP098604.1 Genbank gene 4694231 4694668 . + . ID=gene-NDY25_20060;Name=NDY25_20060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20060 CP098604.1 Protein Homology CDS 4694231 4694668 . + 0 ID=cds-UUF02146.1;Parent=gene-NDY25_20060;Dbxref=NCBI_GP:UUF02146.1;Name=UUF02146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914950.1;locus_tag=NDY25_20060;product=FdtA/QdtA family cupin domain-containing protein;protein_id=UUF02146.1;transl_table=11 CP098604.1 Genbank gene 4694665 4695336 . + . ID=gene-NDY25_20065;Name=NDY25_20065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20065 CP098604.1 Protein Homology CDS 4694665 4695336 . + 0 ID=cds-UUF02147.1;Parent=gene-NDY25_20065;Dbxref=NCBI_GP:UUF02147.1;Name=UUF02147.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966838.1;locus_tag=NDY25_20065;product=acetyltransferase;protein_id=UUF02147.1;transl_table=11 CP098604.1 Genbank gene 4695340 4696293 . + . ID=gene-NDY25_20070;Name=NDY25_20070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20070 CP098604.1 Protein Homology CDS 4695340 4696293 . + 0 ID=cds-UUF02148.1;Parent=gene-NDY25_20070;Dbxref=NCBI_GP:UUF02148.1;Name=UUF02148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155068.1;locus_tag=NDY25_20070;product=hypothetical protein;protein_id=UUF02148.1;transl_table=11 CP098604.1 Genbank gene 4696280 4697212 . + . ID=gene-NDY25_20075;Name=NDY25_20075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20075 CP098604.1 Protein Homology CDS 4696280 4697212 . + 0 ID=cds-UUF02149.1;Parent=gene-NDY25_20075;Dbxref=NCBI_GP:UUF02149.1;Name=UUF02149.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408912.1;locus_tag=NDY25_20075;product=GNAT family N-acetyltransferase;protein_id=UUF02149.1;transl_table=11 CP098604.1 Genbank gene 4697200 4698324 . + . ID=gene-NDY25_20080;Name=NDY25_20080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20080 CP098604.1 Protein Homology CDS 4697200 4698324 . + 0 ID=cds-UUF02150.1;Parent=gene-NDY25_20080;Dbxref=NCBI_GP:UUF02150.1;Name=UUF02150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452982.1;locus_tag=NDY25_20080;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=UUF02150.1;transl_table=11 CP098604.1 Genbank gene 4698321 4699574 . + . ID=gene-NDY25_20085;Name=NDY25_20085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20085 CP098604.1 Protein Homology CDS 4698321 4699574 . + 0 ID=cds-UUF02151.1;Parent=gene-NDY25_20085;Dbxref=NCBI_GP:UUF02151.1;Name=UUF02151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014089953.1;locus_tag=NDY25_20085;product=O-antigen translocase;protein_id=UUF02151.1;transl_table=11 CP098604.1 Genbank gene 4699571 4700521 . + . ID=gene-NDY25_20090;Name=NDY25_20090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20090 CP098604.1 Protein Homology CDS 4699571 4700521 . + 0 ID=cds-UUF02152.1;Parent=gene-NDY25_20090;Dbxref=NCBI_GP:UUF02152.1;Name=UUF02152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503699.1;locus_tag=NDY25_20090;product=glycosyltransferase;protein_id=UUF02152.1;transl_table=11 CP098604.1 Genbank gene 4700518 4701651 . + . ID=gene-NDY25_20095;Name=NDY25_20095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20095 CP098604.1 Protein Homology CDS 4700518 4701651 . + 0 ID=cds-UUF02153.1;Parent=gene-NDY25_20095;Dbxref=NCBI_GP:UUF02153.1;Name=UUF02153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924253.1;locus_tag=NDY25_20095;product=hypothetical protein;protein_id=UUF02153.1;transl_table=11 CP098604.1 Genbank gene 4701696 4702547 . + . ID=gene-NDY25_20100;Name=NDY25_20100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20100 CP098604.1 Protein Homology CDS 4701696 4702547 . + 0 ID=cds-UUF02154.1;Parent=gene-NDY25_20100;Dbxref=NCBI_GP:UUF02154.1;Name=UUF02154.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452976.1;locus_tag=NDY25_20100;product=Wzz/FepE/Etk N-terminal domain-containing protein;protein_id=UUF02154.1;transl_table=11 CP098604.1 Genbank gene 4702705 4703547 . + . ID=gene-NDY25_20105;Name=NDY25_20105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20105 CP098604.1 Protein Homology CDS 4702705 4703547 . + 0 ID=cds-UUF02155.1;Parent=gene-NDY25_20105;Dbxref=NCBI_GP:UUF02155.1;Name=UUF02155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966827.1;locus_tag=NDY25_20105;product=class I SAM-dependent methyltransferase;protein_id=UUF02155.1;transl_table=11 CP098604.1 Genbank pseudogene 4703560 4704777 . + . ID=gene-NDY25_20110;Name=NDY25_20110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20110;pseudo=true CP098604.1 Protein Homology CDS 4703560 4704777 . + 0 ID=cds-NDY25_20110;Parent=gene-NDY25_20110;Note=incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159163.1;locus_tag=NDY25_20110;product=amidohydrolase family protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4704744 4705475 . + . ID=gene-NDY25_20115;Name=NDY25_20115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20115 CP098604.1 Protein Homology CDS 4704744 4705475 . + 0 ID=cds-UUF04730.1;Parent=gene-NDY25_20115;Dbxref=NCBI_GP:UUF04730.1;Name=UUF04730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155076.1;locus_tag=NDY25_20115;product=class I SAM-dependent methyltransferase;protein_id=UUF04730.1;transl_table=11 CP098604.1 Genbank gene 4705612 4706742 . + . ID=gene-NDY25_20120;Name=NDY25_20120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20120 CP098604.1 Protein Homology CDS 4705612 4706742 . + 0 ID=cds-UUF02156.1;Parent=gene-NDY25_20120;Dbxref=NCBI_GP:UUF02156.1;Name=UUF02156.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378292.1;locus_tag=NDY25_20120;product=glycosyltransferase family 4 protein;protein_id=UUF02156.1;transl_table=11 CP098604.1 Genbank gene 4706739 4707851 . + . ID=gene-NDY25_20125;Name=NDY25_20125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20125 CP098604.1 Protein Homology CDS 4706739 4707851 . + 0 ID=cds-UUF02157.1;Parent=gene-NDY25_20125;Dbxref=NCBI_GP:UUF02157.1;Name=UUF02157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452971.1;locus_tag=NDY25_20125;product=glycosyltransferase family 4 protein;protein_id=UUF02157.1;transl_table=11 CP098604.1 Genbank gene 4708428 4709642 . - . ID=gene-NDY25_20130;Name=NDY25_20130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20130 CP098604.1 Protein Homology CDS 4708428 4709642 . - 0 ID=cds-UUF02158.1;Parent=gene-NDY25_20130;Dbxref=NCBI_GP:UUF02158.1;Name=UUF02158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453082.1;locus_tag=NDY25_20130;product=nucleotidyltransferase family protein;protein_id=UUF02158.1;transl_table=11 CP098604.1 Genbank gene 4709700 4711253 . - . ID=gene-NDY25_20135;Name=NDY25_20135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20135 CP098604.1 Protein Homology CDS 4709700 4711253 . - 0 ID=cds-UUF02159.1;Parent=gene-NDY25_20135;Dbxref=NCBI_GP:UUF02159.1;Name=UUF02159.1;Ontology_term=GO:0003824,GO:0051536;gbkey=CDS;go_function=catalytic activity|0003824||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851562.1;locus_tag=NDY25_20135;product=radical SAM protein;protein_id=UUF02159.1;transl_table=11 CP098604.1 Genbank gene 4711408 4712469 . + . ID=gene-NDY25_20140;Name=NDY25_20140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20140 CP098604.1 Protein Homology CDS 4711408 4712469 . + 0 ID=cds-UUF02160.1;Parent=gene-NDY25_20140;Dbxref=NCBI_GP:UUF02160.1;Name=UUF02160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408904.1;locus_tag=NDY25_20140;product=serine kinase;protein_id=UUF02160.1;transl_table=11 CP098604.1 Genbank gene 4712554 4714278 . + . ID=gene-NDY25_20145;Name=NDY25_20145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20145 CP098604.1 Protein Homology CDS 4712554 4714278 . + 0 ID=cds-UUF02161.1;Parent=gene-NDY25_20145;Dbxref=NCBI_GP:UUF02161.1;Name=UUF02161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453079.1;locus_tag=NDY25_20145;product=ABC transporter ATP-binding protein/permease;protein_id=UUF02161.1;transl_table=11 CP098604.1 Genbank gene 4714312 4715724 . - . ID=gene-NDY25_20150;Name=NDY25_20150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20150 CP098604.1 Protein Homology CDS 4714312 4715724 . - 0 ID=cds-UUF02162.1;Parent=gene-NDY25_20150;Dbxref=NCBI_GP:UUF02162.1;Name=UUF02162.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452788.1;locus_tag=NDY25_20150;product=MFS transporter;protein_id=UUF02162.1;transl_table=11 CP098604.1 Genbank gene 4716170 4717171 . + . ID=gene-NDY25_20155;Name=NDY25_20155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20155 CP098604.1 Protein Homology CDS 4716170 4717171 . + 0 ID=cds-UUF02163.1;Parent=gene-NDY25_20155;Dbxref=NCBI_GP:UUF02163.1;Name=UUF02163.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155084.1;locus_tag=NDY25_20155;product=LLM class flavin-dependent oxidoreductase;protein_id=UUF02163.1;transl_table=11 CP098604.1 Genbank gene 4717232 4717732 . + . ID=gene-NDY25_20160;Name=NDY25_20160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20160 CP098604.1 Protein Homology CDS 4717232 4717732 . + 0 ID=cds-UUF02164.1;Parent=gene-NDY25_20160;Dbxref=NCBI_GP:UUF02164.1;Name=UUF02164.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966811.1;locus_tag=NDY25_20160;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=UUF02164.1;transl_table=11 CP098604.1 Genbank gene 4717768 4718439 . - . ID=gene-NDY25_20165;Name=NDY25_20165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20165 CP098604.1 Protein Homology CDS 4717768 4718439 . - 0 ID=cds-UUF02165.1;Parent=gene-NDY25_20165;Dbxref=NCBI_GP:UUF02165.1;Name=UUF02165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019301803.1;locus_tag=NDY25_20165;product=exopolysaccharide biosynthesis protein;protein_id=UUF02165.1;transl_table=11 CP098604.1 Genbank gene 4718423 4719763 . - . ID=gene-NDY25_20170;Name=NDY25_20170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20170 CP098604.1 Protein Homology CDS 4718423 4719763 . - 0 ID=cds-UUF02166.1;Parent=gene-NDY25_20170;Dbxref=NCBI_GP:UUF02166.1;Name=UUF02166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051102.1;locus_tag=NDY25_20170;product=hemolysin family protein;protein_id=UUF02166.1;transl_table=11 CP098604.1 Genbank gene 4720038 4720664 . + . ID=gene-NDY25_20175;Name=NDY25_20175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20175 CP098604.1 Protein Homology CDS 4720038 4720664 . + 0 ID=cds-UUF02167.1;Parent=gene-NDY25_20175;Dbxref=NCBI_GP:UUF02167.1;Name=UUF02167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992439.1;locus_tag=NDY25_20175;product=DUF47 family protein;protein_id=UUF02167.1;transl_table=11 CP098604.1 Genbank gene 4720674 4721801 . + . ID=gene-NDY25_20180;Name=NDY25_20180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20180 CP098604.1 Protein Homology CDS 4720674 4721801 . + 0 ID=cds-UUF02168.1;Parent=gene-NDY25_20180;Dbxref=NCBI_GP:UUF02168.1;Name=UUF02168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914989.1;locus_tag=NDY25_20180;product=inorganic phosphate transporter;protein_id=UUF02168.1;transl_table=11 CP098604.1 Genbank gene 4721924 4722685 . + . ID=gene-NDY25_20185;Name=NDY25_20185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20185 CP098604.1 Protein Homology CDS 4721924 4722685 . + 0 ID=cds-UUF02169.1;Parent=gene-NDY25_20185;Dbxref=NCBI_GP:UUF02169.1;Name=UUF02169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155090.1;locus_tag=NDY25_20185;product=YdcF family protein;protein_id=UUF02169.1;transl_table=11 CP098604.1 Genbank gene 4722944 4724458 . - . ID=gene-NDY25_20190;Name=NDY25_20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20190 CP098604.1 Protein Homology CDS 4722944 4724458 . - 0 ID=cds-UUF02170.1;Parent=gene-NDY25_20190;Dbxref=NCBI_GP:UUF02170.1;Name=UUF02170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919581.1;locus_tag=NDY25_20190;product=S10 family peptidase;protein_id=UUF02170.1;transl_table=11 CP098604.1 Genbank gene 4724943 4726832 . - . ID=gene-NDY25_20195;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=NDY25_20195 CP098604.1 Protein Homology CDS 4724943 4726832 . - 0 ID=cds-UUF02171.1;Parent=gene-NDY25_20195;Dbxref=NCBI_GP:UUF02171.1;Name=UUF02171.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parE;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237730.1;locus_tag=NDY25_20195;product=DNA topoisomerase IV subunit B;protein_id=UUF02171.1;transl_table=11 CP098604.1 Genbank gene 4726994 4727236 . + . ID=gene-NDY25_20200;Name=NDY25_20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20200 CP098604.1 Protein Homology CDS 4726994 4727236 . + 0 ID=cds-UUF02172.1;Parent=gene-NDY25_20200;Dbxref=NCBI_GP:UUF02172.1;Name=UUF02172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481819.1;locus_tag=NDY25_20200;product=hypothetical protein;protein_id=UUF02172.1;transl_table=11 CP098604.1 Genbank gene 4727426 4729090 . + . ID=gene-NDY25_20205;Name=NDY25_20205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20205 CP098604.1 Protein Homology CDS 4727426 4729090 . + 0 ID=cds-UUF02173.1;Parent=gene-NDY25_20205;Dbxref=NCBI_GP:UUF02173.1;Name=UUF02173.1;Ontology_term=GO:0006221,GO:0006241,GO:0003883;gbkey=CDS;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,CTP biosynthetic process|0006241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481821.1;locus_tag=NDY25_20205;product=CTP synthase;protein_id=UUF02173.1;transl_table=11 CP098604.1 Genbank gene 4729251 4730081 . + . ID=gene-NDY25_20210;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=NDY25_20210 CP098604.1 Protein Homology CDS 4729251 4730081 . + 0 ID=cds-UUF02174.1;Parent=gene-NDY25_20210;Dbxref=NCBI_GP:UUF02174.1;Name=UUF02174.1;Ontology_term=GO:0009058,GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005992423.1;locus_tag=NDY25_20210;product=3-deoxy-8-phosphooctulonate synthase;protein_id=UUF02174.1;transl_table=11 CP098604.1 Genbank gene 4730078 4730440 . + . ID=gene-NDY25_20215;Name=NDY25_20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20215 CP098604.1 Protein Homology CDS 4730078 4730440 . + 0 ID=cds-UUF02175.1;Parent=gene-NDY25_20215;Dbxref=NCBI_GP:UUF02175.1;Name=UUF02175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453320.1;locus_tag=NDY25_20215;product=hypothetical protein;protein_id=UUF02175.1;transl_table=11 CP098604.1 Genbank gene 4730566 4731858 . + . ID=gene-NDY25_20220;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=NDY25_20220 CP098604.1 Protein Homology CDS 4730566 4731858 . + 0 ID=cds-UUF02176.1;Parent=gene-NDY25_20220;Dbxref=NCBI_GP:UUF02176.1;Name=UUF02176.1;Ontology_term=GO:0006096,GO:0004634;gbkey=CDS;gene=eno;go_function=phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002808113.1;locus_tag=NDY25_20220;product=phosphopyruvate hydratase;protein_id=UUF02176.1;transl_table=11 CP098604.1 Genbank gene 4731862 4732224 . + . ID=gene-NDY25_20225;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=NDY25_20225 CP098604.1 Protein Homology CDS 4731862 4732224 . + 0 ID=cds-UUF02177.1;Parent=gene-NDY25_20225;Dbxref=NCBI_GP:UUF02177.1;Name=UUF02177.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259528.1;locus_tag=NDY25_20225;product=cell division protein FtsB;protein_id=UUF02177.1;transl_table=11 CP098604.1 Genbank gene 4732221 4732994 . + . ID=gene-NDY25_20230;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=NDY25_20230 CP098604.1 Protein Homology CDS 4732221 4732994 . + 0 ID=cds-UUF02178.1;Parent=gene-NDY25_20230;Dbxref=NCBI_GP:UUF02178.1;Name=UUF02178.1;Ontology_term=GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507477.1;locus_tag=NDY25_20230;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=UUF02178.1;transl_table=11 CP098604.1 Genbank gene 4733142 4733633 . + . ID=gene-NDY25_20235;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=NDY25_20235 CP098604.1 Protein Homology CDS 4733142 4733633 . + 0 ID=cds-UUF02179.1;Parent=gene-NDY25_20235;Dbxref=NCBI_GP:UUF02179.1;Name=UUF02179.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453316.1;locus_tag=NDY25_20235;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=UUF02179.1;transl_table=11 CP098604.1 Genbank gene 4733868 4734971 . + . ID=gene-NDY25_20240;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=NDY25_20240 CP098604.1 Protein Homology CDS 4733868 4734971 . + 0 ID=cds-UUF02180.1;Parent=gene-NDY25_20240;Dbxref=NCBI_GP:UUF02180.1;Name=UUF02180.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453315.1;locus_tag=NDY25_20240;product=tRNA pseudouridine(13) synthase TruD;protein_id=UUF02180.1;transl_table=11 CP098604.1 Genbank gene 4735096 4735635 . - . ID=gene-NDY25_20245;Name=NDY25_20245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20245 CP098604.1 Protein Homology CDS 4735096 4735635 . - 0 ID=cds-UUF02181.1;Parent=gene-NDY25_20245;Dbxref=NCBI_GP:UUF02181.1;Name=UUF02181.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237727.1;locus_tag=NDY25_20245;product=Smr/MutS family protein;protein_id=UUF02181.1;transl_table=11 CP098604.1 Genbank gene 4735735 4736514 . + . ID=gene-NDY25_20250;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=NDY25_20250 CP098604.1 Protein Homology CDS 4735735 4736514 . + 0 ID=cds-UUF02182.1;Parent=gene-NDY25_20250;Dbxref=NCBI_GP:UUF02182.1;Name=UUF02182.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019305385.1;locus_tag=NDY25_20250;product=5'/3'-nucleotidase SurE;protein_id=UUF02182.1;transl_table=11 CP098604.1 Genbank gene 4736511 4737191 . + . ID=gene-NDY25_20255;Name=NDY25_20255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20255 CP098604.1 Protein Homology CDS 4736511 4737191 . + 0 ID=cds-UUF02183.1;Parent=gene-NDY25_20255;Dbxref=NCBI_GP:UUF02183.1;Name=UUF02183.1;Ontology_term=GO:0006464,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=cellular protein modification process|0006464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503664.1;locus_tag=NDY25_20255;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=UUF02183.1;transl_table=11 CP098604.1 Genbank gene 4737210 4737824 . + . ID=gene-NDY25_20260;Name=NDY25_20260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20260 CP098604.1 Protein Homology CDS 4737210 4737824 . + 0 ID=cds-UUF02184.1;Parent=gene-NDY25_20260;Dbxref=NCBI_GP:UUF02184.1;Name=UUF02184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481846.1;locus_tag=NDY25_20260;product=DedA family protein;protein_id=UUF02184.1;transl_table=11 CP098604.1 Genbank gene 4737821 4738594 . + . ID=gene-NDY25_20265;Name=NDY25_20265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20265 CP098604.1 Protein Homology CDS 4737821 4738594 . + 0 ID=cds-UUF02185.1;Parent=gene-NDY25_20265;Dbxref=NCBI_GP:UUF02185.1;Name=UUF02185.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481848.1;locus_tag=NDY25_20265;product=peptidoglycan DD-metalloendopeptidase family protein;protein_id=UUF02185.1;transl_table=11 CP098604.1 Genbank gene 4738764 4739144 . - . ID=gene-NDY25_20270;Name=NDY25_20270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20270 CP098604.1 Protein Homology CDS 4738764 4739144 . - 0 ID=cds-UUF02186.1;Parent=gene-NDY25_20270;Dbxref=NCBI_GP:UUF02186.1;Name=UUF02186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904007.1;locus_tag=NDY25_20270;product=Mth938-like domain-containing protein;protein_id=UUF02186.1;transl_table=11 CP098604.1 Genbank gene 4739160 4739465 . - . ID=gene-NDY25_20275;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=NDY25_20275 CP098604.1 Protein Homology CDS 4739160 4739465 . - 0 ID=cds-UUF02187.1;Parent=gene-NDY25_20275;Dbxref=NCBI_GP:UUF02187.1;Name=UUF02187.1;Ontology_term=GO:0008150,GO:0003723,GO:0005737;gbkey=CDS;gene=yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300317.1;locus_tag=NDY25_20275;product=ribosome assembly RNA-binding protein YhbY;protein_id=UUF02187.1;transl_table=11 CP098604.1 Genbank gene 4739531 4740163 . + . ID=gene-NDY25_20280;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=NDY25_20280 CP098604.1 Protein Homology CDS 4739531 4740163 . + 0 ID=cds-UUF02188.1;Parent=gene-NDY25_20280;Dbxref=NCBI_GP:UUF02188.1;Name=UUF02188.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924322.1;locus_tag=NDY25_20280;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=UUF02188.1;transl_table=11 CP098604.1 Genbank gene 4740225 4742165 . + . ID=gene-NDY25_20285;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=NDY25_20285 CP098604.1 Protein Homology CDS 4740225 4742165 . + 0 ID=cds-UUF02189.1;Parent=gene-NDY25_20285;Dbxref=NCBI_GP:UUF02189.1;Name=UUF02189.1;Ontology_term=GO:0006508,GO:0051301,GO:0004222,GO:0016887;gbkey=CDS;gene=ftsH;go_function=metalloendopeptidase activity|0004222||IEA,ATP hydrolysis activity|0016887||IEA;go_process=proteolysis|0006508||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481854.1;locus_tag=NDY25_20285;product=ATP-dependent zinc metalloprotease FtsH;protein_id=UUF02189.1;transl_table=11 CP098604.1 Genbank gene 4742375 4743277 . + . ID=gene-NDY25_20290;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=NDY25_20290 CP098604.1 Protein Homology CDS 4742375 4743277 . + 0 ID=cds-UUF02190.1;Parent=gene-NDY25_20290;Dbxref=NCBI_GP:UUF02190.1;Name=UUF02190.1;Ontology_term=GO:0009396,GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453304.1;locus_tag=NDY25_20290;product=dihydropteroate synthase;protein_id=UUF02190.1;transl_table=11 CP098604.1 Genbank gene 4743277 4744260 . + . ID=gene-NDY25_20295;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=NDY25_20295 CP098604.1 Protein Homology CDS 4743277 4744260 . + 0 ID=cds-UUF02191.1;Parent=gene-NDY25_20295;Dbxref=NCBI_GP:UUF02191.1;Name=UUF02191.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155109.1;locus_tag=NDY25_20295;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=UUF02191.1;transl_table=11 CP098604.1 Genbank gene 4744338 4744616 . + . ID=gene-NDY25_20300;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=NDY25_20300 CP098604.1 Protein Homology CDS 4744338 4744616 . + 0 ID=cds-UUF04731.1;Parent=gene-NDY25_20300;Dbxref=NCBI_GP:UUF04731.1;Name=UUF04731.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002801494.1;locus_tag=NDY25_20300;product=RNA chaperone Hfq;protein_id=UUF04731.1;transl_table=11 CP098604.1 Genbank gene 4744628 4745947 . + . ID=gene-NDY25_20305;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=NDY25_20305 CP098604.1 Protein Homology CDS 4744628 4745947 . + 0 ID=cds-UUF02192.1;Parent=gene-NDY25_20305;Dbxref=NCBI_GP:UUF02192.1;Name=UUF02192.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503654.1;locus_tag=NDY25_20305;product=GTPase HflX;protein_id=UUF02192.1;transl_table=11 CP098604.1 Genbank gene 4746143 4746637 . + . ID=gene-NDY25_20310;Name=NDY25_20310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20310 CP098604.1 Protein Homology CDS 4746143 4746637 . + 0 ID=cds-UUF02193.1;Parent=gene-NDY25_20310;Dbxref=NCBI_GP:UUF02193.1;Name=UUF02193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481865.1;locus_tag=NDY25_20310;product=CinA family protein;protein_id=UUF02193.1;transl_table=11 CP098604.1 Genbank gene 4746917 4749445 . + . ID=gene-NDY25_20315;Name=NDY25_20315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20315 CP098604.1 Protein Homology CDS 4746917 4749445 . + 0 ID=cds-UUF02194.1;Parent=gene-NDY25_20315;Dbxref=NCBI_GP:UUF02194.1;Name=UUF02194.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453299.1;locus_tag=NDY25_20315;product=TonB-dependent receptor;protein_id=UUF02194.1;transl_table=11 CP098604.1 Genbank gene 4749877 4751553 . + . ID=gene-NDY25_20320;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=NDY25_20320 CP098604.1 Protein Homology CDS 4749877 4751553 . + 0 ID=cds-UUF02195.1;Parent=gene-NDY25_20320;Dbxref=NCBI_GP:UUF02195.1;Name=UUF02195.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155111.1;locus_tag=NDY25_20320;product=2-polyprenylphenol 6-hydroxylase;protein_id=UUF02195.1;transl_table=11 CP098604.1 Genbank gene 4751663 4752304 . + . ID=gene-NDY25_20325;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=NDY25_20325 CP098604.1 Protein Homology CDS 4751663 4752304 . + 0 ID=cds-UUF02196.1;Parent=gene-NDY25_20325;Dbxref=NCBI_GP:UUF02196.1;Name=UUF02196.1;Ontology_term=GO:0006282,GO:0006355,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=regulation of DNA repair|0006282||IEA,regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011269877.1;locus_tag=NDY25_20325;product=transcriptional repressor LexA;protein_id=UUF02196.1;transl_table=11 CP098604.1 Genbank gene 4752477 4753511 . + . ID=gene-NDY25_20330;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=NDY25_20330 CP098604.1 Protein Homology CDS 4752477 4753511 . + 0 ID=cds-UUF02197.1;Parent=gene-NDY25_20330;Dbxref=NCBI_GP:UUF02197.1;Name=UUF02197.1;Ontology_term=GO:0006281,GO:0006310,GO:0009432,GO:0003677,GO:0008094,GO:0005737;gbkey=CDS;gene=recA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051113.1;locus_tag=NDY25_20330;product=recombinase RecA;protein_id=UUF02197.1;transl_table=11 CP098604.1 Genbank gene 4753795 4754283 . + . ID=gene-NDY25_20335;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=NDY25_20335 CP098604.1 Protein Homology CDS 4753795 4754283 . + 0 ID=cds-UUF02198.1;Parent=gene-NDY25_20335;Dbxref=NCBI_GP:UUF02198.1;Name=UUF02198.1;gbkey=CDS;gene=recX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966764.1;locus_tag=NDY25_20335;product=recombination regulator RecX;protein_id=UUF02198.1;transl_table=11 CP098604.1 Genbank gene 4754384 4757032 . + . ID=gene-NDY25_20340;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=NDY25_20340 CP098604.1 Protein Homology CDS 4754384 4757032 . + 0 ID=cds-UUF02199.1;Parent=gene-NDY25_20340;Dbxref=NCBI_GP:UUF02199.1;Name=UUF02199.1;Ontology_term=GO:0006419,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347112.1;locus_tag=NDY25_20340;product=alanine--tRNA ligase;protein_id=UUF02199.1;transl_table=11 CP098604.1 Genbank gene 4757172 4757384 . + . ID=gene-NDY25_20345;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=NDY25_20345 CP098604.1 Protein Homology CDS 4757172 4757384 . + 0 ID=cds-UUF02200.1;Parent=gene-NDY25_20345;Dbxref=NCBI_GP:UUF02200.1;Name=UUF02200.1;Ontology_term=GO:0006109,GO:0006402,GO:0003723;gbkey=CDS;gene=csrA;go_function=RNA binding|0003723||IEA;go_process=regulation of carbohydrate metabolic process|0006109||IEA,mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481884.1;locus_tag=NDY25_20345;product=carbon storage regulator CsrA;protein_id=UUF02200.1;transl_table=11 CP098604.1 Genbank gene 4757468 4757560 . + . ID=gene-NDY25_20350;Name=NDY25_20350;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_20350 CP098604.1 tRNAscan-SE tRNA 4757468 4757560 . + . ID=rna-NDY25_20350;Parent=gene-NDY25_20350;anticodon=(pos:4757502..4757504);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20350;product=tRNA-Ser CP098604.1 tRNAscan-SE exon 4757468 4757560 . + . ID=exon-NDY25_20350-1;Parent=rna-NDY25_20350;anticodon=(pos:4757502..4757504);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20350;product=tRNA-Ser CP098604.1 Genbank gene 4757832 4759778 . + . ID=gene-NDY25_20355;Name=NDY25_20355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20355 CP098604.1 Protein Homology CDS 4757832 4759778 . + 0 ID=cds-UUF04732.1;Parent=gene-NDY25_20355;Dbxref=NCBI_GP:UUF04732.1;Name=UUF04732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904269.1;locus_tag=NDY25_20355;product=PAS domain-containing methyl-accepting chemotaxis protein;protein_id=UUF04732.1;transl_table=11 CP098604.1 Genbank gene 4760177 4760878 . - . ID=gene-NDY25_20360;Name=NDY25_20360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20360 CP098604.1 Protein Homology CDS 4760177 4760878 . - 0 ID=cds-UUF02201.1;Parent=gene-NDY25_20360;Dbxref=NCBI_GP:UUF02201.1;Name=UUF02201.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007966758.1;locus_tag=NDY25_20360;product=pirin family protein;protein_id=UUF02201.1;transl_table=11 CP098604.1 Genbank gene 4761015 4761959 . + . ID=gene-NDY25_20365;Name=NDY25_20365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20365 CP098604.1 Protein Homology CDS 4761015 4761959 . + 0 ID=cds-UUF02202.1;Parent=gene-NDY25_20365;Dbxref=NCBI_GP:UUF02202.1;Name=UUF02202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438553.1;locus_tag=NDY25_20365;product=LysR family transcriptional regulator;protein_id=UUF02202.1;transl_table=11 CP098604.1 Genbank gene 4762004 4762996 . + . ID=gene-NDY25_20370;Name=NDY25_20370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20370 CP098604.1 Protein Homology CDS 4762004 4762996 . + 0 ID=cds-UUF02203.1;Parent=gene-NDY25_20370;Dbxref=NCBI_GP:UUF02203.1;Name=UUF02203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006453290.1;locus_tag=NDY25_20370;product=DedA family protein/thiosulfate sulfurtransferase GlpE;protein_id=UUF02203.1;transl_table=11 CP098604.1 Genbank gene 4763133 4763209 . - . ID=gene-NDY25_20375;Name=NDY25_20375;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_20375 CP098604.1 tRNAscan-SE tRNA 4763133 4763209 . - . ID=rna-NDY25_20375;Parent=gene-NDY25_20375;anticodon=(pos:complement(4763173..4763175));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20375;product=tRNA-Arg CP098604.1 tRNAscan-SE exon 4763133 4763209 . - . ID=exon-NDY25_20375-1;Parent=rna-NDY25_20375;anticodon=(pos:complement(4763173..4763175));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20375;product=tRNA-Arg CP098604.1 Genbank gene 4763305 4763381 . - . ID=gene-NDY25_20380;Name=NDY25_20380;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_20380 CP098604.1 tRNAscan-SE tRNA 4763305 4763381 . - . ID=rna-NDY25_20380;Parent=gene-NDY25_20380;anticodon=(pos:complement(4763345..4763347));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20380;product=tRNA-Arg CP098604.1 tRNAscan-SE exon 4763305 4763381 . - . ID=exon-NDY25_20380-1;Parent=rna-NDY25_20380;anticodon=(pos:complement(4763345..4763347));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20380;product=tRNA-Arg CP098604.1 Genbank gene 4763518 4764327 . - . ID=gene-NDY25_20385;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=NDY25_20385 CP098604.1 Protein Homology CDS 4763518 4764327 . - 0 ID=cds-UUF02204.1;Parent=gene-NDY25_20385;Dbxref=NCBI_GP:UUF02204.1;Name=UUF02204.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481896.1;locus_tag=NDY25_20385;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=UUF02204.1;transl_table=11 CP098604.1 Genbank gene 4764365 4765036 . - . ID=gene-NDY25_20390;Name=NDY25_20390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20390 CP098604.1 Protein Homology CDS 4764365 4765036 . - 0 ID=cds-UUF02205.1;Parent=gene-NDY25_20390;Dbxref=NCBI_GP:UUF02205.1;Name=UUF02205.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904787.1;locus_tag=NDY25_20390;product=DUF1275 domain-containing protein;protein_id=UUF02205.1;transl_table=11 CP098604.1 Genbank gene 4765043 4765525 . - . ID=gene-NDY25_20395;Name=NDY25_20395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20395 CP098604.1 Protein Homology CDS 4765043 4765525 . - 0 ID=cds-UUF02206.1;Parent=gene-NDY25_20395;Dbxref=NCBI_GP:UUF02206.1;Name=UUF02206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481901.1;locus_tag=NDY25_20395;product=hypothetical protein;protein_id=UUF02206.1;transl_table=11 CP098604.1 Genbank gene 4765525 4766922 . - . ID=gene-NDY25_20400;Name=NDY25_20400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20400 CP098604.1 Protein Homology CDS 4765525 4766922 . - 0 ID=cds-UUF02207.1;Parent=gene-NDY25_20400;Dbxref=NCBI_GP:UUF02207.1;Name=UUF02207.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010365742.1;locus_tag=NDY25_20400;product=PhoH family protein;protein_id=UUF02207.1;transl_table=11 CP098604.1 Genbank gene 4767005 4767487 . - . ID=gene-NDY25_20405;Name=NDY25_20405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20405 CP098604.1 Protein Homology CDS 4767005 4767487 . - 0 ID=cds-UUF02208.1;Parent=gene-NDY25_20405;Dbxref=NCBI_GP:UUF02208.1;Name=UUF02208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481906.1;locus_tag=NDY25_20405;product=peroxiredoxin;protein_id=UUF02208.1;transl_table=11 CP098604.1 Genbank gene 4767525 4767875 . - . ID=gene-NDY25_20410;Name=NDY25_20410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20410 CP098604.1 Protein Homology CDS 4767525 4767875 . - 0 ID=cds-UUF02209.1;Parent=gene-NDY25_20410;Dbxref=NCBI_GP:UUF02209.1;Name=UUF02209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300297.1;locus_tag=NDY25_20410;product=ribonuclease E inhibitor RraB;protein_id=UUF02209.1;transl_table=11 CP098604.1 Genbank gene 4767889 4768515 . - . ID=gene-NDY25_20415;Name=NDY25_20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20415 CP098604.1 Protein Homology CDS 4767889 4768515 . - 0 ID=cds-UUF02210.1;Parent=gene-NDY25_20415;Dbxref=NCBI_GP:UUF02210.1;Name=UUF02210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503111.1;locus_tag=NDY25_20415;product=glycine cleavage system protein R;protein_id=UUF02210.1;transl_table=11 CP098604.1 Genbank gene 4768609 4769517 . + . ID=gene-NDY25_20420;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=NDY25_20420 CP098604.1 Protein Homology CDS 4768609 4769517 . + 0 ID=cds-UUF02211.1;Parent=gene-NDY25_20420;Dbxref=NCBI_GP:UUF02211.1;Name=UUF02211.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813784.1;locus_tag=NDY25_20420;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=UUF02211.1;transl_table=11 CP098604.1 Genbank gene 4769534 4770049 . + . ID=gene-NDY25_20425;Name=NDY25_20425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20425 CP098604.1 Protein Homology CDS 4769534 4770049 . + 0 ID=cds-UUF02212.1;Parent=gene-NDY25_20425;Dbxref=NCBI_GP:UUF02212.1;Name=UUF02212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994930.1;locus_tag=NDY25_20425;product=hypothetical protein;protein_id=UUF02212.1;transl_table=11 CP098604.1 Genbank gene 4770178 4770501 . - . ID=gene-NDY25_20430;Name=NDY25_20430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20430 CP098604.1 Protein Homology CDS 4770178 4770501 . - 0 ID=cds-UUF02213.1;Parent=gene-NDY25_20430;Dbxref=NCBI_GP:UUF02213.1;Name=UUF02213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005994928.1;locus_tag=NDY25_20430;product=ferredoxin family protein;protein_id=UUF02213.1;transl_table=11 CP098604.1 Genbank gene 4770828 4771805 . - . ID=gene-NDY25_20435;Name=NDY25_20435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20435 CP098604.1 Protein Homology CDS 4770828 4771805 . - 0 ID=cds-UUF02214.1;Parent=gene-NDY25_20435;Dbxref=NCBI_GP:UUF02214.1;Name=UUF02214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452537.1;locus_tag=NDY25_20435;product=2-dehydro-3-deoxygalactonokinase;protein_id=UUF02214.1;transl_table=11 CP098604.1 Genbank gene 4771802 4772719 . - . ID=gene-NDY25_20440;Name=NDY25_20440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20440 CP098604.1 Protein Homology CDS 4771802 4772719 . - 0 ID=cds-UUF02215.1;Parent=gene-NDY25_20440;Dbxref=NCBI_GP:UUF02215.1;Name=UUF02215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155129.1;locus_tag=NDY25_20440;product=SMP-30/gluconolactonase/LRE family protein;protein_id=UUF02215.1;transl_table=11 CP098604.1 Genbank gene 4772713 4773861 . - . ID=gene-NDY25_20445;Name=dgoD;gbkey=Gene;gene=dgoD;gene_biotype=protein_coding;locus_tag=NDY25_20445 CP098604.1 Protein Homology CDS 4772713 4773861 . - 0 ID=cds-UUF02216.1;Parent=gene-NDY25_20445;Dbxref=NCBI_GP:UUF02216.1;Name=UUF02216.1;Ontology_term=GO:0009063,GO:0008869;gbkey=CDS;gene=dgoD;go_function=galactonate dehydratase activity|0008869||IEA;go_process=cellular amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020077623.1;locus_tag=NDY25_20445;product=galactonate dehydratase;protein_id=UUF02216.1;transl_table=11 CP098604.1 Genbank gene 4773858 4774490 . - . ID=gene-NDY25_20450;Name=NDY25_20450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20450 CP098604.1 Protein Homology CDS 4773858 4774490 . - 0 ID=cds-UUF02217.1;Parent=gene-NDY25_20450;Dbxref=NCBI_GP:UUF02217.1;Name=UUF02217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452718.1;locus_tag=NDY25_20450;product=2-dehydro-3-deoxy-6-phosphogalactonate aldolase;protein_id=UUF02217.1;transl_table=11 CP098604.1 Genbank pseudogene 4774906 4775876 . + . ID=gene-NDY25_20455;Name=NDY25_20455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20455;pseudo=true CP098604.1 Protein Homology CDS 4774906 4775876 . + 0 ID=cds-NDY25_20455;Parent=gene-NDY25_20455;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903232.1;locus_tag=NDY25_20455;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4776140 4779070 . + . ID=gene-NDY25_20460;Name=NDY25_20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20460 CP098604.1 Protein Homology CDS 4776140 4779070 . + 0 ID=cds-UUF02218.1;Parent=gene-NDY25_20460;Dbxref=NCBI_GP:UUF02218.1;Name=UUF02218.1;Ontology_term=GO:0006810,GO:0022857,GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005919521.1;locus_tag=NDY25_20460;product=TonB-dependent receptor;protein_id=UUF02218.1;transl_table=11 CP098604.1 Genbank pseudogene 4779408 4782142 . + . ID=gene-NDY25_20465;Name=NDY25_20465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20465;pseudo=true CP098604.1 Protein Homology CDS 4779408 4782142 . + 0 ID=cds-NDY25_20465;Parent=gene-NDY25_20465;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171617.1;locus_tag=NDY25_20465;product=TonB-dependent receptor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4782252 4784516 . + . ID=gene-NDY25_20470;Name=NDY25_20470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20470 CP098604.1 Protein Homology CDS 4782252 4784516 . + 0 ID=cds-UUF02219.1;Parent=gene-NDY25_20470;Dbxref=NCBI_GP:UUF02219.1;Name=UUF02219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016849742.1;locus_tag=NDY25_20470;product=cellulase;protein_id=UUF02219.1;transl_table=11 CP098604.1 Genbank gene 4784623 4786539 . + . ID=gene-NDY25_20475;Name=NDY25_20475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20475 CP098604.1 Protein Homology CDS 4784623 4786539 . + 0 ID=cds-UUF02220.1;Parent=gene-NDY25_20475;Dbxref=NCBI_GP:UUF02220.1;Name=UUF02220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003481935.1;locus_tag=NDY25_20475;product=beta galactosidase jelly roll domain-containing protein;protein_id=UUF02220.1;transl_table=11 CP098604.1 Genbank gene 4786551 4788293 . + . ID=gene-NDY25_20480;Name=NDY25_20480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20480 CP098604.1 Protein Homology CDS 4786551 4788293 . + 0 ID=cds-UUF02221.1;Parent=gene-NDY25_20480;Dbxref=NCBI_GP:UUF02221.1;Name=UUF02221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438541.1;locus_tag=NDY25_20480;product=DUF5597 domain-containing protein;protein_id=UUF02221.1;transl_table=11 CP098604.1 Genbank gene 4788418 4791321 . + . ID=gene-NDY25_20485;Name=NDY25_20485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20485 CP098604.1 Protein Homology CDS 4788418 4791321 . + 0 ID=cds-UUF02222.1;Parent=gene-NDY25_20485;Dbxref=NCBI_GP:UUF02222.1;Name=UUF02222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017114815.1;locus_tag=NDY25_20485;product=DUF5110 domain-containing protein;protein_id=UUF02222.1;transl_table=11 CP098604.1 Genbank gene 4791413 4793794 . + . ID=gene-NDY25_20490;Name=NDY25_20490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20490 CP098604.1 Protein Homology CDS 4791413 4793794 . + 0 ID=cds-UUF02223.1;Parent=gene-NDY25_20490;Dbxref=NCBI_GP:UUF02223.1;Name=UUF02223.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924393.1;locus_tag=NDY25_20490;product=glycoside hydrolase family 95 protein;protein_id=UUF02223.1;transl_table=11 CP098604.1 Genbank gene 4793791 4795284 . + . ID=gene-NDY25_20495;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=NDY25_20495 CP098604.1 Protein Homology CDS 4793791 4795284 . + 0 ID=cds-UUF02224.1;Parent=gene-NDY25_20495;Dbxref=NCBI_GP:UUF02224.1;Name=UUF02224.1;Ontology_term=GO:0005997,GO:0042732,GO:0004856,GO:0005515;gbkey=CDS;gene=xylB;go_function=xylulokinase activity|0004856||IEA,protein binding|0005515||IEA;go_process=xylulose metabolic process|0005997||IEA,D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813741.1;locus_tag=NDY25_20495;product=xylulokinase;protein_id=UUF02224.1;transl_table=11 CP098604.1 Genbank gene 4795333 4796670 . + . ID=gene-NDY25_20500;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=NDY25_20500 CP098604.1 Protein Homology CDS 4795333 4796670 . + 0 ID=cds-UUF02225.1;Parent=gene-NDY25_20500;Dbxref=NCBI_GP:UUF02225.1;Name=UUF02225.1;Ontology_term=GO:0006098,GO:0042732,GO:0000287,GO:0009045;gbkey=CDS;gene=xylA;go_function=magnesium ion binding|0000287||IEA,xylose isomerase activity|0009045||IEA;go_process=pentose-phosphate shunt|0006098||IEA,D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171248.1;locus_tag=NDY25_20500;product=xylose isomerase;protein_id=UUF02225.1;transl_table=11 CP098604.1 Genbank gene 4796756 4798183 . + . ID=gene-NDY25_20505;Name=NDY25_20505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20505 CP098604.1 Protein Homology CDS 4796756 4798183 . + 0 ID=cds-UUF02226.1;Parent=gene-NDY25_20505;Dbxref=NCBI_GP:UUF02226.1;Name=UUF02226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371361.1;locus_tag=NDY25_20505;product=sugar porter family MFS transporter;protein_id=UUF02226.1;transl_table=11 CP098604.1 Genbank pseudogene 4798568 4800116 . + . ID=gene-NDY25_20510;Name=NDY25_20510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20510;pseudo=true CP098604.1 Protein Homology CDS 4798568 4800116 . + 0 ID=cds-NDY25_20510;Parent=gene-NDY25_20510;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158034.1;locus_tag=NDY25_20510;product=MASE1 domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 4800055 4800524 . - . ID=gene-NDY25_20515;Name=NDY25_20515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20515;pseudo=true CP098604.1 Protein Homology CDS 4800055 4800524 . - 0 ID=cds-NDY25_20515;Parent=gene-NDY25_20515;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993317.1;locus_tag=NDY25_20515;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4800934 4801158 . - . ID=gene-NDY25_20520;Name=NDY25_20520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20520 CP098604.1 Protein Homology CDS 4800934 4801158 . - 0 ID=cds-UUF02227.1;Parent=gene-NDY25_20520;Dbxref=NCBI_GP:UUF02227.1;Name=UUF02227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036936.1;locus_tag=NDY25_20520;product=hypothetical protein;protein_id=UUF02227.1;transl_table=11 CP098604.1 Genbank gene 4801379 4802539 . + . ID=gene-NDY25_20525;Name=NDY25_20525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20525 CP098604.1 Protein Homology CDS 4801379 4802539 . + 0 ID=cds-UUF02228.1;Parent=gene-NDY25_20525;Dbxref=NCBI_GP:UUF02228.1;Name=UUF02228.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036937.1;locus_tag=NDY25_20525;product=N-acetylmuramoyl-L-alanine amidase;protein_id=UUF02228.1;transl_table=11 CP098604.1 Genbank gene 4802575 4803498 . + . ID=gene-NDY25_20530;Name=folE2;gbkey=Gene;gene=folE2;gene_biotype=protein_coding;locus_tag=NDY25_20530 CP098604.1 Protein Homology CDS 4802575 4803498 . + 0 ID=cds-UUF02229.1;Parent=gene-NDY25_20530;Dbxref=NCBI_GP:UUF02229.1;Name=UUF02229.1;Ontology_term=GO:0035998,GO:0003933;gbkey=CDS;gene=folE2;go_function=GTP cyclohydrolase activity|0003933||IEA;go_process=7%2C8-dihydroneopterin 3'-triphosphate biosynthetic process|0035998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158037.1;locus_tag=NDY25_20530;product=GTP cyclohydrolase FolE2;protein_id=UUF02229.1;transl_table=11 CP098604.1 Genbank gene 4803938 4804012 . - . ID=gene-NDY25_20535;Name=NDY25_20535;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_20535 CP098604.1 tRNAscan-SE tRNA 4803938 4804012 . - . ID=rna-NDY25_20535;Parent=gene-NDY25_20535;anticodon=(pos:complement(4803977..4803979));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20535;product=tRNA-Glu CP098604.1 tRNAscan-SE exon 4803938 4804012 . - . ID=exon-NDY25_20535-1;Parent=rna-NDY25_20535;anticodon=(pos:complement(4803977..4803979));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20535;product=tRNA-Glu CP098604.1 Genbank gene 4804061 4805428 . + . ID=gene-NDY25_20540;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=NDY25_20540 CP098604.1 Protein Homology CDS 4804061 4805428 . + 0 ID=cds-UUF02230.1;Parent=gene-NDY25_20540;Dbxref=NCBI_GP:UUF02230.1;Name=UUF02230.1;Ontology_term=GO:0006378,GO:0003723,GO:0004652;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,polynucleotide adenylyltransferase activity|0004652||IEA;go_process=mRNA polyadenylation|0006378||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116093.1;locus_tag=NDY25_20540;product=polynucleotide adenylyltransferase PcnB;protein_id=UUF02230.1;transl_table=11 CP098604.1 Genbank gene 4805432 4805917 . + . ID=gene-NDY25_20545;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=NDY25_20545 CP098604.1 Protein Homology CDS 4805432 4805917 . + 0 ID=cds-UUF02231.1;Parent=gene-NDY25_20545;Dbxref=NCBI_GP:UUF02231.1;Name=UUF02231.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;gene=folK;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017169088.1;locus_tag=NDY25_20545;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=UUF02231.1;transl_table=11 CP098604.1 Genbank gene 4805953 4806768 . + . ID=gene-NDY25_20550;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=NDY25_20550 CP098604.1 Protein Homology CDS 4805953 4806768 . + 0 ID=cds-UUF02232.1;Parent=gene-NDY25_20550;Dbxref=NCBI_GP:UUF02232.1;Name=UUF02232.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408567.1;locus_tag=NDY25_20550;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=UUF02232.1;transl_table=11 CP098604.1 Genbank gene 4806765 4807607 . + . ID=gene-NDY25_20555;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=NDY25_20555 CP098604.1 Protein Homology CDS 4806765 4807607 . + 0 ID=cds-UUF02233.1;Parent=gene-NDY25_20555;Dbxref=NCBI_GP:UUF02233.1;Name=UUF02233.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259031.1;locus_tag=NDY25_20555;product=pantoate--beta-alanine ligase;protein_id=UUF02233.1;transl_table=11 CP098604.1 Genbank gene 4807717 4808097 . + . ID=gene-NDY25_20560;Name=NDY25_20560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20560 CP098604.1 Protein Homology CDS 4807717 4808097 . + 0 ID=cds-UUF02234.1;Parent=gene-NDY25_20560;Dbxref=NCBI_GP:UUF02234.1;Name=UUF02234.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011036943.1;locus_tag=NDY25_20560;product=aspartate 1-decarboxylase;protein_id=UUF02234.1;transl_table=11 CP098604.1 Genbank gene 4808094 4809608 . + . ID=gene-NDY25_20565;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=NDY25_20565 CP098604.1 Protein Homology CDS 4808094 4809608 . + 0 ID=cds-UUF02235.1;Parent=gene-NDY25_20565;Dbxref=NCBI_GP:UUF02235.1;Name=UUF02235.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300464.1;locus_tag=NDY25_20565;product=glucose-6-phosphate isomerase;protein_id=UUF02235.1;transl_table=11 CP098604.1 Genbank gene 4809821 4810165 . + . ID=gene-NDY25_20570;Name=NDY25_20570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20570 CP098604.1 Protein Homology CDS 4809821 4810165 . + 0 ID=cds-UUF02236.1;Parent=gene-NDY25_20570;Dbxref=NCBI_GP:UUF02236.1;Name=UUF02236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010371400.1;locus_tag=NDY25_20570;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=UUF02236.1;transl_table=11 CP098604.1 Genbank gene 4810169 4810795 . + . ID=gene-NDY25_20575;Name=NDY25_20575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20575 CP098604.1 Protein Homology CDS 4810169 4810795 . + 0 ID=cds-UUF02237.1;Parent=gene-NDY25_20575;Dbxref=NCBI_GP:UUF02237.1;Name=UUF02237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452315.1;locus_tag=NDY25_20575;product=hypothetical protein;protein_id=UUF02237.1;transl_table=11 CP098604.1 Genbank gene 4811718 4813673 . - . ID=gene-NDY25_20580;Name=NDY25_20580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20580 CP098604.1 Protein Homology CDS 4811718 4813673 . - 0 ID=cds-UUF02238.1;Parent=gene-NDY25_20580;Dbxref=NCBI_GP:UUF02238.1;Name=UUF02238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463094.1;locus_tag=NDY25_20580;product=PhoX family protein;protein_id=UUF02238.1;transl_table=11 CP098604.1 Genbank gene 4814109 4816721 . + . ID=gene-NDY25_20585;Name=NDY25_20585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20585 CP098604.1 Protein Homology CDS 4814109 4816721 . + 0 ID=cds-UUF02239.1;Parent=gene-NDY25_20585;Dbxref=NCBI_GP:UUF02239.1;Name=UUF02239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300459.1;locus_tag=NDY25_20585;product=exo 1%2C3/1%2C4-beta-D-glucan glucohydrolase;protein_id=UUF02239.1;transl_table=11 CP098604.1 Genbank gene 4816977 4818539 . + . ID=gene-NDY25_20590;Name=NDY25_20590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20590 CP098604.1 Protein Homology CDS 4816977 4818539 . + 0 ID=cds-UUF02240.1;Parent=gene-NDY25_20590;Dbxref=NCBI_GP:UUF02240.1;Name=UUF02240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116097.1;locus_tag=NDY25_20590;product=sodium/sugar symporter;protein_id=UUF02240.1;transl_table=11 CP098604.1 Genbank gene 4818641 4820488 . - . ID=gene-NDY25_20595;Name=NDY25_20595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20595 CP098604.1 Protein Homology CDS 4818641 4820488 . - 0 ID=cds-UUF02241.1;Parent=gene-NDY25_20595;Dbxref=NCBI_GP:UUF02241.1;Name=UUF02241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259023.1;locus_tag=NDY25_20595;product=EAL domain-containing protein;protein_id=UUF02241.1;transl_table=11 CP098604.1 Genbank gene 4820924 4821910 . + . ID=gene-NDY25_20600;Name=NDY25_20600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20600 CP098604.1 Protein Homology CDS 4820924 4821910 . + 0 ID=cds-UUF02242.1;Parent=gene-NDY25_20600;Dbxref=NCBI_GP:UUF02242.1;Name=UUF02242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503142.1;locus_tag=NDY25_20600;product=glycoside hydrolase family 5 protein;protein_id=UUF02242.1;transl_table=11 CP098604.1 Genbank gene 4822818 4823396 . - . ID=gene-NDY25_20605;Name=NDY25_20605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20605 CP098604.1 Protein Homology CDS 4822818 4823396 . - 0 ID=cds-UUF02243.1;Parent=gene-NDY25_20605;Dbxref=NCBI_GP:UUF02243.1;Name=UUF02243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903100.1;locus_tag=NDY25_20605;product=response regulator transcription factor;protein_id=UUF02243.1;transl_table=11 CP098604.1 Genbank gene 4823393 4824619 . - . ID=gene-NDY25_20610;Name=NDY25_20610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20610 CP098604.1 Protein Homology CDS 4823393 4824619 . - 0 ID=cds-UUF02244.1;Parent=gene-NDY25_20610;Dbxref=NCBI_GP:UUF02244.1;Name=UUF02244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158053.1;locus_tag=NDY25_20610;product=ATP-binding protein;protein_id=UUF02244.1;transl_table=11 CP098604.1 Genbank gene 4824740 4826005 . + . ID=gene-NDY25_20615;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=NDY25_20615 CP098604.1 Protein Homology CDS 4824740 4826005 . + 0 ID=cds-UUF02245.1;Parent=gene-NDY25_20615;Dbxref=NCBI_GP:UUF02245.1;Name=UUF02245.1;Ontology_term=GO:0044237,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity|0046429||IEA;go_process=cellular metabolic process|0044237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300453.1;locus_tag=NDY25_20615;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=UUF02245.1;transl_table=11 CP098604.1 Genbank gene 4825986 4826699 . + . ID=gene-NDY25_20620;Name=NDY25_20620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20620 CP098604.1 Protein Homology CDS 4825986 4826699 . + 0 ID=cds-UUF04733.1;Parent=gene-NDY25_20620;Dbxref=NCBI_GP:UUF04733.1;Name=UUF04733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903103.1;locus_tag=NDY25_20620;product=phosphatase PAP2 family protein;protein_id=UUF04733.1;transl_table=11 CP098604.1 Genbank gene 4826810 4827235 . + . ID=gene-NDY25_20625;Name=NDY25_20625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20625 CP098604.1 Protein Homology CDS 4826810 4827235 . + 0 ID=cds-UUF02246.1;Parent=gene-NDY25_20625;Dbxref=NCBI_GP:UUF02246.1;Name=UUF02246.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004086769.1;locus_tag=NDY25_20625;product=cupin domain-containing protein;protein_id=UUF02246.1;transl_table=11 CP098604.1 Genbank gene 4827315 4828613 . - . ID=gene-NDY25_20630;Name=NDY25_20630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20630 CP098604.1 Protein Homology CDS 4827315 4828613 . - 0 ID=cds-UUF02247.1;Parent=gene-NDY25_20630;Dbxref=NCBI_GP:UUF02247.1;Name=UUF02247.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449320.1;locus_tag=NDY25_20630;product=MFS transporter;protein_id=UUF02247.1;transl_table=11 CP098604.1 Genbank pseudogene 4828779 4829004 . - . ID=gene-NDY25_20635;Name=NDY25_20635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20635;pseudo=true CP098604.1 Protein Homology CDS 4828779 4829004 . - 0 ID=cds-NDY25_20635;Parent=gene-NDY25_20635;Note=frameshifted%3B internal stop%3B incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016851273.1;locus_tag=NDY25_20635;product=aspartate/glutamate racemase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4829099 4830010 . - . ID=gene-NDY25_20640;Name=NDY25_20640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20640 CP098604.1 Protein Homology CDS 4829099 4830010 . - 0 ID=cds-UUF02248.1;Parent=gene-NDY25_20640;Dbxref=NCBI_GP:UUF02248.1;Name=UUF02248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813681.1;locus_tag=NDY25_20640;product=DMT family transporter;protein_id=UUF02248.1;transl_table=11 CP098604.1 Genbank gene 4830004 4831056 . - . ID=gene-NDY25_20645;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=NDY25_20645 CP098604.1 Protein Homology CDS 4830004 4831056 . - 0 ID=cds-UUF02249.1;Parent=gene-NDY25_20645;Dbxref=NCBI_GP:UUF02249.1;Name=UUF02249.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090027.1;locus_tag=NDY25_20645;product=UDP-N-acetylmuramate dehydrogenase;protein_id=UUF02249.1;transl_table=11 CP098604.1 Genbank gene 4831053 4832108 . - . ID=gene-NDY25_20650;Name=NDY25_20650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20650 CP098604.1 Protein Homology CDS 4831053 4832108 . - 0 ID=cds-UUF02250.1;Parent=gene-NDY25_20650;Dbxref=NCBI_GP:UUF02250.1;Name=UUF02250.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090028.1;locus_tag=NDY25_20650;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=UUF02250.1;transl_table=11 CP098604.1 Genbank gene 4832114 4832881 . - . ID=gene-NDY25_20655;Name=NDY25_20655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20655 CP098604.1 Protein Homology CDS 4832114 4832881 . - 0 ID=cds-UUF02251.1;Parent=gene-NDY25_20655;Dbxref=NCBI_GP:UUF02251.1;Name=UUF02251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015472255.1;locus_tag=NDY25_20655;product=class I SAM-dependent methyltransferase;protein_id=UUF02251.1;transl_table=11 CP098604.1 Genbank gene 4832884 4833168 . - . ID=gene-NDY25_20660;Name=NDY25_20660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20660 CP098604.1 Protein Homology CDS 4832884 4833168 . - 0 ID=cds-UUF02252.1;Parent=gene-NDY25_20660;Dbxref=NCBI_GP:UUF02252.1;Name=UUF02252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005916283.1;locus_tag=NDY25_20660;product=DUF4190 domain-containing protein;protein_id=UUF02252.1;transl_table=11 CP098604.1 Genbank gene 4833548 4835083 . - . ID=gene-NDY25_20665;Name=NDY25_20665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20665 CP098604.1 Protein Homology CDS 4833548 4835083 . - 0 ID=cds-UUF02253.1;Parent=gene-NDY25_20665;Dbxref=NCBI_GP:UUF02253.1;Name=UUF02253.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449326.1;locus_tag=NDY25_20665;product=aldehyde dehydrogenase family protein;protein_id=UUF02253.1;transl_table=11 CP098604.1 Genbank gene 4835218 4835293 . + . ID=gene-NDY25_20670;Name=NDY25_20670;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_20670 CP098604.1 tRNAscan-SE tRNA 4835218 4835293 . + . ID=rna-NDY25_20670;Parent=gene-NDY25_20670;gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20670;product=tRNA-OTHER CP098604.1 tRNAscan-SE exon 4835218 4835293 . + . ID=exon-NDY25_20670-1;Parent=rna-NDY25_20670;gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_20670;product=tRNA-OTHER CP098604.1 Genbank gene 4835882 4840348 . + . ID=gene-NDY25_20675;Name=NDY25_20675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20675 CP098604.1 Protein Homology CDS 4835882 4840348 . + 0 ID=cds-UUF02254.1;Parent=gene-NDY25_20675;Dbxref=NCBI_GP:UUF02254.1;Name=UUF02254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452940.1;locus_tag=NDY25_20675;product=polymorphic toxin type 34 domain-containing protein;protein_id=UUF02254.1;transl_table=11 CP098604.1 Genbank gene 4840312 4841196 . + . ID=gene-NDY25_20680;Name=NDY25_20680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20680 CP098604.1 Protein Homology CDS 4840312 4841196 . + 0 ID=cds-UUF02255.1;Parent=gene-NDY25_20680;Dbxref=NCBI_GP:UUF02255.1;Name=UUF02255.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025030.2;locus_tag=NDY25_20680;product=HEAT repeat domain-containing protein;protein_id=UUF02255.1;transl_table=11 CP098604.1 Genbank gene 4841338 4842526 . + . ID=gene-NDY25_20685;Name=NDY25_20685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20685 CP098604.1 Protein Homology CDS 4841338 4841582 . + 0 ID=cds-UUF02256.1;Parent=gene-NDY25_20685;Dbxref=NCBI_GP:UUF02256.1;Name=UUF02256.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_20685;product=IS3 family transposase;protein_id=UUF02256.1;transl_table=11 CP098604.1 Protein Homology CDS 4841581 4842526 . + 1 ID=cds-UUF02256.1;Parent=gene-NDY25_20685;Dbxref=NCBI_GP:UUF02256.1;Name=UUF02256.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612016.1;locus_tag=NDY25_20685;product=IS3 family transposase;protein_id=UUF02256.1;transl_table=11 CP098604.1 Genbank gene 4842545 4843652 . + . ID=gene-NDY25_20690;Name=NDY25_20690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20690 CP098604.1 Protein Homology CDS 4842545 4842801 . + 0 ID=cds-UUF02257.1;Parent=gene-NDY25_20690;Dbxref=NCBI_GP:UUF02257.1;Name=UUF02257.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_20690;product=IS3 family transposase;protein_id=UUF02257.1;transl_table=11 CP098604.1 Protein Homology CDS 4842800 4843652 . + 1 ID=cds-UUF02257.1;Parent=gene-NDY25_20690;Dbxref=NCBI_GP:UUF02257.1;Name=UUF02257.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611839.1;locus_tag=NDY25_20690;product=IS3 family transposase;protein_id=UUF02257.1;transl_table=11 CP098604.1 Genbank gene 4843609 4844310 . + . ID=gene-NDY25_20695;Name=NDY25_20695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20695 CP098604.1 GeneMarkS-2+ CDS 4843609 4844310 . + 0 ID=cds-UUF02258.1;Parent=gene-NDY25_20695;Dbxref=NCBI_GP:UUF02258.1;Name=UUF02258.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_20695;product=hypothetical protein;protein_id=UUF02258.1;transl_table=11 CP098604.1 Genbank gene 4844400 4845380 . - . ID=gene-NDY25_20700;Name=NDY25_20700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20700 CP098604.1 Protein Homology CDS 4844400 4845380 . - 0 ID=cds-UUF02259.1;Parent=gene-NDY25_20700;Dbxref=NCBI_GP:UUF02259.1;Name=UUF02259.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_20700;product=IS5 family transposase;protein_id=UUF02259.1;transl_table=11 CP098604.1 Genbank gene 4846162 4846560 . + . ID=gene-NDY25_20705;Name=NDY25_20705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20705 CP098604.1 GeneMarkS-2+ CDS 4846162 4846560 . + 0 ID=cds-UUF02260.1;Parent=gene-NDY25_20705;Dbxref=NCBI_GP:UUF02260.1;Name=UUF02260.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_20705;product=hypothetical protein;protein_id=UUF02260.1;transl_table=11 CP098604.1 Genbank pseudogene 4846631 4846962 . + . ID=gene-NDY25_20710;Name=NDY25_20710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_20710;pseudo=true CP098604.1 Protein Homology CDS 4846631 4846962 . + 0 ID=cds-NDY25_20710;Parent=gene-NDY25_20710;Note=frameshifted%3B incomplete%3B partial on complete genome%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=transposition%2C DNA-mediated|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558217.1;locus_tag=NDY25_20710;product=transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4847060 4847560 . + . ID=gene-NDY25_20715;Name=NDY25_20715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20715 CP098604.1 Protein Homology CDS 4847060 4847560 . + 0 ID=cds-UUF02261.1;Parent=gene-NDY25_20715;Dbxref=NCBI_GP:UUF02261.1;Name=UUF02261.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158458.1;locus_tag=NDY25_20715;product=tryptophan-rich sensory protein;protein_id=UUF02261.1;transl_table=11 CP098604.1 Genbank gene 4848082 4850589 . + . ID=gene-NDY25_20720;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=NDY25_20720 CP098604.1 Protein Homology CDS 4848082 4850589 . + 0 ID=cds-UUF02262.1;Parent=gene-NDY25_20720;Dbxref=NCBI_GP:UUF02262.1;Name=UUF02262.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=cellular amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113111.1;locus_tag=NDY25_20720;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=UUF02262.1;transl_table=11 CP098604.1 Genbank gene 4850658 4851599 . + . ID=gene-NDY25_20725;Name=NDY25_20725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20725 CP098604.1 Protein Homology CDS 4850658 4851599 . + 0 ID=cds-UUF02263.1;Parent=gene-NDY25_20725;Dbxref=NCBI_GP:UUF02263.1;Name=UUF02263.1;Ontology_term=GO:0006566,GO:0004413,GO:0005524;gbkey=CDS;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine metabolic process|0006566||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450790.1;locus_tag=NDY25_20725;product=homoserine kinase;protein_id=UUF02263.1;transl_table=11 CP098604.1 Genbank gene 4851674 4851988 . - . ID=gene-NDY25_20730;Name=NDY25_20730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20730 CP098604.1 Protein Homology CDS 4851674 4851988 . - 0 ID=cds-UUF02264.1;Parent=gene-NDY25_20730;Dbxref=NCBI_GP:UUF02264.1;Name=UUF02264.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507566.1;locus_tag=NDY25_20730;product=EthD family reductase;protein_id=UUF02264.1;transl_table=11 CP098604.1 Genbank gene 4852162 4853469 . + . ID=gene-NDY25_20735;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=NDY25_20735 CP098604.1 Protein Homology CDS 4852162 4853469 . + 0 ID=cds-UUF02265.1;Parent=gene-NDY25_20735;Dbxref=NCBI_GP:UUF02265.1;Name=UUF02265.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450787.1;locus_tag=NDY25_20735;product=threonine synthase;protein_id=UUF02265.1;transl_table=11 CP098604.1 Genbank gene 4853572 4854318 . + . ID=gene-NDY25_20740;Name=NDY25_20740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20740 CP098604.1 Protein Homology CDS 4853572 4854318 . + 0 ID=cds-UUF02266.1;Parent=gene-NDY25_20740;Dbxref=NCBI_GP:UUF02266.1;Name=UUF02266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155322.1;locus_tag=NDY25_20740;product=murein L%2CD-transpeptidase catalytic domain family protein;protein_id=UUF02266.1;transl_table=11 CP098604.1 Genbank gene 4854543 4855305 . - . ID=gene-NDY25_20745;Name=NDY25_20745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20745 CP098604.1 Protein Homology CDS 4854986 4855305 . - 0 ID=cds-UUF04734.1;Parent=gene-NDY25_20745;Dbxref=NCBI_GP:UUF04734.1;Name=UUF04734.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_20745;product=IS5 family transposase;protein_id=UUF04734.1;transl_table=11 CP098604.1 Protein Homology CDS 4854543 4854987 . - 1 ID=cds-UUF04734.1;Parent=gene-NDY25_20745;Dbxref=NCBI_GP:UUF04734.1;Name=UUF04734.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558226.1;locus_tag=NDY25_20745;product=IS5 family transposase;protein_id=UUF04734.1;transl_table=11 CP098604.1 Genbank gene 4855386 4856051 . - . ID=gene-NDY25_20750;Name=NDY25_20750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20750 CP098604.1 Protein Homology CDS 4855386 4856051 . - 0 ID=cds-UUF04735.1;Parent=gene-NDY25_20750;Dbxref=NCBI_GP:UUF04735.1;Name=UUF04735.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of transcription%2C DNA-templated|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159460.1;locus_tag=NDY25_20750;product=helix-turn-helix domain-containing protein;protein_id=UUF04735.1;transl_table=11 CP098604.1 Genbank gene 4856255 4857691 . + . ID=gene-NDY25_20755;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=NDY25_20755 CP098604.1 Protein Homology CDS 4856255 4857691 . + 0 ID=cds-UUF02267.1;Parent=gene-NDY25_20755;Dbxref=NCBI_GP:UUF02267.1;Name=UUF02267.1;Ontology_term=GO:0006427,GO:0004821,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507570.1;locus_tag=NDY25_20755;product=histidine--tRNA ligase;protein_id=UUF02267.1;transl_table=11 CP098604.1 Genbank gene 4857917 4858243 . + . ID=gene-NDY25_20760;Name=NDY25_20760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20760 CP098604.1 Protein Homology CDS 4857917 4858243 . + 0 ID=cds-UUF02268.1;Parent=gene-NDY25_20760;Dbxref=NCBI_GP:UUF02268.1;Name=UUF02268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155319.1;locus_tag=NDY25_20760;product=YerC/YecD family TrpR-related protein;protein_id=UUF02268.1;transl_table=11 CP098604.1 Genbank gene 4858253 4859167 . + . ID=gene-NDY25_20765;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=NDY25_20765 CP098604.1 Protein Homology CDS 4858253 4859167 . + 0 ID=cds-UUF02269.1;Parent=gene-NDY25_20765;Dbxref=NCBI_GP:UUF02269.1;Name=UUF02269.1;Ontology_term=GO:0000105,GO:0003879;gbkey=CDS;gene=hisG;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237692.1;locus_tag=NDY25_20765;product=ATP phosphoribosyltransferase;protein_id=UUF02269.1;transl_table=11 CP098604.1 Genbank gene 4859164 4860459 . + . ID=gene-NDY25_20770;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=NDY25_20770 CP098604.1 Protein Homology CDS 4859164 4860459 . + 0 ID=cds-UUF02270.1;Parent=gene-NDY25_20770;Dbxref=NCBI_GP:UUF02270.1;Name=UUF02270.1;Ontology_term=GO:0000105,GO:0004399;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347185.1;locus_tag=NDY25_20770;product=histidinol dehydrogenase;protein_id=UUF02270.1;transl_table=11 CP098604.1 Genbank gene 4860456 4861547 . + . ID=gene-NDY25_20775;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=NDY25_20775 CP098604.1 Protein Homology CDS 4860456 4861547 . + 0 ID=cds-UUF02271.1;Parent=gene-NDY25_20775;Dbxref=NCBI_GP:UUF02271.1;Name=UUF02271.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090046.1;locus_tag=NDY25_20775;product=histidinol-phosphate transaminase;protein_id=UUF02271.1;transl_table=11 CP098604.1 Genbank gene 4861544 4862671 . + . ID=gene-NDY25_20780;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=NDY25_20780 CP098604.1 Protein Homology CDS 4861544 4862671 . + 0 ID=cds-UUF02272.1;Parent=gene-NDY25_20780;Dbxref=NCBI_GP:UUF02272.1;Name=UUF02272.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571443.1;locus_tag=NDY25_20780;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=UUF02272.1;transl_table=11 CP098604.1 Genbank gene 4862668 4863270 . + . ID=gene-NDY25_20785;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=NDY25_20785 CP098604.1 Protein Homology CDS 4862668 4863270 . + 0 ID=cds-UUF02273.1;Parent=gene-NDY25_20785;Dbxref=NCBI_GP:UUF02273.1;Name=UUF02273.1;Ontology_term=GO:0000105,GO:0000107,GO:0016884;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA,carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor|0016884||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302508.1;locus_tag=NDY25_20785;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=UUF02273.1;transl_table=11 CP098604.1 Genbank gene 4863267 4864001 . + . ID=gene-NDY25_20790;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=NDY25_20790 CP098604.1 Protein Homology CDS 4863267 4864001 . + 0 ID=cds-UUF02274.1;Parent=gene-NDY25_20790;Dbxref=NCBI_GP:UUF02274.1;Name=UUF02274.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155313.1;locus_tag=NDY25_20790;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=UUF02274.1;transl_table=11 CP098604.1 Genbank gene 4863995 4864771 . + . ID=gene-NDY25_20795;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=NDY25_20795 CP098604.1 Protein Homology CDS 4863995 4864771 . + 0 ID=cds-UUF02275.1;Parent=gene-NDY25_20795;Dbxref=NCBI_GP:UUF02275.1;Name=UUF02275.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503177.1;locus_tag=NDY25_20795;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=UUF02275.1;transl_table=11 CP098604.1 Genbank gene 4864807 4865385 . + . ID=gene-NDY25_20800;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=NDY25_20800 CP098604.1 Protein Homology CDS 4864807 4865385 . + 0 ID=cds-UUF04736.1;Parent=gene-NDY25_20800;Dbxref=NCBI_GP:UUF04736.1;Name=UUF04736.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020851328.1;locus_tag=NDY25_20800;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=UUF04736.1;transl_table=11 CP098604.1 Genbank gene 4865555 4867141 . + . ID=gene-NDY25_20805;Name=NDY25_20805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20805 CP098604.1 Protein Homology CDS 4865555 4867141 . + 0 ID=cds-UUF02276.1;Parent=gene-NDY25_20805;Dbxref=NCBI_GP:UUF02276.1;Name=UUF02276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017168443.1;locus_tag=NDY25_20805;product=calcineurin-like phosphoesterase family protein;protein_id=UUF02276.1;transl_table=11 CP098604.1 Genbank gene 4867430 4868521 . - . ID=gene-NDY25_20810;Name=NDY25_20810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20810 CP098604.1 Protein Homology CDS 4867430 4868521 . - 0 ID=cds-UUF02277.1;Parent=gene-NDY25_20810;Dbxref=NCBI_GP:UUF02277.1;Name=UUF02277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450773.1;locus_tag=NDY25_20810;product=C13 family peptidase;protein_id=UUF02277.1;transl_table=11 CP098604.1 Genbank gene 4869006 4869704 . - . ID=gene-NDY25_20815;Name=mtnC;gbkey=Gene;gene=mtnC;gene_biotype=protein_coding;locus_tag=NDY25_20815 CP098604.1 Protein Homology CDS 4869006 4869704 . - 0 ID=cds-UUF02278.1;Parent=gene-NDY25_20815;Dbxref=NCBI_GP:UUF02278.1;Name=UUF02278.1;Ontology_term=GO:0019509,GO:0016791,GO:0016862;gbkey=CDS;gene=mtnC;go_function=phosphatase activity|0016791||IEA,intramolecular oxidoreductase activity%2C interconverting keto- and enol-groups|0016862||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174222.1;locus_tag=NDY25_20815;product=acireductone synthase;protein_id=UUF02278.1;transl_table=11 CP098604.1 Genbank gene 4869707 4870273 . - . ID=gene-NDY25_20820;Name=NDY25_20820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20820 CP098604.1 Protein Homology CDS 4869707 4870273 . - 0 ID=cds-UUF02279.1;Parent=gene-NDY25_20820;Dbxref=NCBI_GP:UUF02279.1;Name=UUF02279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571451.1;locus_tag=NDY25_20820;product=acireductone dioxygenase;protein_id=UUF02279.1;transl_table=11 CP098604.1 Genbank gene 4870314 4870967 . - . ID=gene-NDY25_20825;Name=NDY25_20825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20825 CP098604.1 Protein Homology CDS 4870314 4870967 . - 0 ID=cds-UUF02280.1;Parent=gene-NDY25_20825;Dbxref=NCBI_GP:UUF02280.1;Name=UUF02280.1;Ontology_term=GO:0019509,GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;go_process=L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155307.1;locus_tag=NDY25_20825;product=methylthioribulose 1-phosphate dehydratase;protein_id=UUF02280.1;transl_table=11 CP098604.1 Genbank gene 4871535 4872965 . - . ID=gene-NDY25_20830;Name=NDY25_20830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20830 CP098604.1 Protein Homology CDS 4871535 4872965 . - 0 ID=cds-UUF02281.1;Parent=gene-NDY25_20830;Dbxref=NCBI_GP:UUF02281.1;Name=UUF02281.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486240.1;locus_tag=NDY25_20830;product=amino acid permease;protein_id=UUF02281.1;transl_table=11 CP098604.1 Genbank gene 4873107 4874579 . - . ID=gene-NDY25_20835;Name=NDY25_20835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20835 CP098604.1 Protein Homology CDS 4873107 4874579 . - 0 ID=cds-UUF02282.1;Parent=gene-NDY25_20835;Dbxref=NCBI_GP:UUF02282.1;Name=UUF02282.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922595.1;locus_tag=NDY25_20835;product=amino acid permease;protein_id=UUF02282.1;transl_table=11 CP098604.1 Genbank gene 4874722 4875309 . + . ID=gene-NDY25_20840;Name=NDY25_20840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20840 CP098604.1 Protein Homology CDS 4874722 4875309 . + 0 ID=cds-UUF02283.1;Parent=gene-NDY25_20840;Dbxref=NCBI_GP:UUF02283.1;Name=UUF02283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159458.1;locus_tag=NDY25_20840;product=NUDIX hydrolase;protein_id=UUF02283.1;transl_table=11 CP098604.1 Genbank gene 4875729 4876970 . - . ID=gene-NDY25_20845;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=NDY25_20845 CP098604.1 Protein Homology CDS 4875729 4876970 . - 0 ID=cds-UUF02284.1;Parent=gene-NDY25_20845;Dbxref=NCBI_GP:UUF02284.1;Name=UUF02284.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005915394.1;locus_tag=NDY25_20845;product=phosphoglycerate dehydrogenase;protein_id=UUF02284.1;transl_table=11 CP098604.1 Genbank gene 4877180 4878598 . + . ID=gene-NDY25_20850;Name=NDY25_20850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20850 CP098604.1 Protein Homology CDS 4877180 4878598 . + 0 ID=cds-UUF02285.1;Parent=gene-NDY25_20850;Dbxref=NCBI_GP:UUF02285.1;Name=UUF02285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155302.1;locus_tag=NDY25_20850;product=FAD-binding oxidoreductase;protein_id=UUF02285.1;transl_table=11 CP098604.1 Genbank gene 4878633 4878926 . + . ID=gene-NDY25_20855;Name=NDY25_20855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20855 CP098604.1 Protein Homology CDS 4878633 4878926 . + 0 ID=cds-UUF02286.1;Parent=gene-NDY25_20855;Dbxref=NCBI_GP:UUF02286.1;Name=UUF02286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011408424.1;locus_tag=NDY25_20855;product=DUF2388 domain-containing protein;protein_id=UUF02286.1;transl_table=11 CP098604.1 Genbank gene 4878923 4880782 . + . ID=gene-NDY25_20860;Name=NDY25_20860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20860 CP098604.1 Protein Homology CDS 4878923 4880782 . + 0 ID=cds-UUF02287.1;Parent=gene-NDY25_20860;Dbxref=NCBI_GP:UUF02287.1;Name=UUF02287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367134.1;locus_tag=NDY25_20860;product=DUF4105 domain-containing protein;protein_id=UUF02287.1;transl_table=11 CP098604.1 Genbank gene 4880960 4881352 . - . ID=gene-NDY25_20865;Name=NDY25_20865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20865 CP098604.1 Protein Homology CDS 4880960 4881352 . - 0 ID=cds-UUF02288.1;Parent=gene-NDY25_20865;Dbxref=NCBI_GP:UUF02288.1;Name=UUF02288.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155301.1;locus_tag=NDY25_20865;product=hypothetical protein;protein_id=UUF02288.1;transl_table=11 CP098604.1 Genbank gene 4881352 4881918 . - . ID=gene-NDY25_20870;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=NDY25_20870 CP098604.1 Protein Homology CDS 4881352 4881918 . - 0 ID=cds-UUF02289.1;Parent=gene-NDY25_20870;Dbxref=NCBI_GP:UUF02289.1;Name=UUF02289.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009603592.1;locus_tag=NDY25_20870;product=elongation factor P-like protein YeiP;protein_id=UUF02289.1;transl_table=11 CP098604.1 Genbank gene 4882019 4882789 . - . ID=gene-NDY25_20875;Name=NDY25_20875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20875 CP098604.1 Protein Homology CDS 4882019 4882789 . - 0 ID=cds-UUF02290.1;Parent=gene-NDY25_20875;Dbxref=NCBI_GP:UUF02290.1;Name=UUF02290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486257.1;locus_tag=NDY25_20875;product=SDR family oxidoreductase;protein_id=UUF02290.1;transl_table=11 CP098604.1 Genbank gene 4882940 4883836 . - . ID=gene-NDY25_20880;Name=NDY25_20880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20880 CP098604.1 Protein Homology CDS 4882940 4883836 . - 0 ID=cds-UUF02291.1;Parent=gene-NDY25_20880;Dbxref=NCBI_GP:UUF02291.1;Name=UUF02291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571466.1;locus_tag=NDY25_20880;product=hydroxymethylglutaryl-CoA lyase;protein_id=UUF02291.1;transl_table=11 CP098604.1 Genbank gene 4883833 4884630 . - . ID=gene-NDY25_20885;Name=NDY25_20885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20885 CP098604.1 Protein Homology CDS 4883833 4884630 . - 0 ID=cds-UUF04737.1;Parent=gene-NDY25_20885;Dbxref=NCBI_GP:UUF04737.1;Name=UUF04737.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155296.1;locus_tag=NDY25_20885;product=enoyl-CoA hydratase-related protein;protein_id=UUF04737.1;transl_table=11 CP098604.1 Genbank gene 4884747 4884995 . + . ID=gene-NDY25_20890;Name=NDY25_20890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20890 CP098604.1 Protein Homology CDS 4884747 4884995 . + 0 ID=cds-UUF04738.1;Parent=gene-NDY25_20890;Dbxref=NCBI_GP:UUF04738.1;Name=UUF04738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944573.1;locus_tag=NDY25_20890;product=ferrous iron transport protein A;protein_id=UUF04738.1;transl_table=11 CP098604.1 Genbank gene 4884992 4886851 . + . ID=gene-NDY25_20895;Name=NDY25_20895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20895 CP098604.1 Protein Homology CDS 4884992 4886851 . + 0 ID=cds-UUF02292.1;Parent=gene-NDY25_20895;Dbxref=NCBI_GP:UUF02292.1;Name=UUF02292.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017164088.1;locus_tag=NDY25_20895;product=ferrous iron transporter B;protein_id=UUF02292.1;transl_table=11 CP098604.1 Genbank gene 4886853 4887107 . + . ID=gene-NDY25_20900;Name=NDY25_20900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20900 CP098604.1 Protein Homology CDS 4886853 4887107 . + 0 ID=cds-UUF02293.1;Parent=gene-NDY25_20900;Dbxref=NCBI_GP:UUF02293.1;Name=UUF02293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051184.1;locus_tag=NDY25_20900;product=hypothetical protein;protein_id=UUF02293.1;transl_table=11 CP098604.1 Genbank gene 4887160 4888362 . + . ID=gene-NDY25_20905;Name=NDY25_20905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20905 CP098604.1 Protein Homology CDS 4887160 4888362 . + 0 ID=cds-UUF02294.1;Parent=gene-NDY25_20905;Dbxref=NCBI_GP:UUF02294.1;Name=UUF02294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303888.1;locus_tag=NDY25_20905;product=PLP-dependent aminotransferase family protein;protein_id=UUF02294.1;transl_table=11 CP098604.1 Genbank gene 4888507 4889223 . + . ID=gene-NDY25_20910;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=NDY25_20910 CP098604.1 Protein Homology CDS 4888507 4889223 . + 0 ID=cds-UUF02295.1;Parent=gene-NDY25_20910;Dbxref=NCBI_GP:UUF02295.1;Name=UUF02295.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010367114.1;locus_tag=NDY25_20910;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=UUF02295.1;transl_table=11 CP098604.1 Genbank gene 4889463 4890590 . + . ID=gene-NDY25_20915;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=NDY25_20915 CP098604.1 Protein Homology CDS 4889463 4890590 . + 0 ID=cds-UUF02296.1;Parent=gene-NDY25_20915;Dbxref=NCBI_GP:UUF02296.1;Name=UUF02296.1;Ontology_term=GO:0009220,GO:0004088,GO:0005951;gbkey=CDS;gene=carA;go_component=carbamoyl-phosphate synthase complex|0005951||IEA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037011.1;locus_tag=NDY25_20915;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=UUF02296.1;transl_table=11 CP098604.1 Genbank gene 4890590 4891141 . + . ID=gene-NDY25_20920;Name=NDY25_20920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20920 CP098604.1 Protein Homology CDS 4890590 4891141 . + 0 ID=cds-UUF02297.1;Parent=gene-NDY25_20920;Dbxref=NCBI_GP:UUF02297.1;Name=UUF02297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507601.1;locus_tag=NDY25_20920;product=hypothetical protein;protein_id=UUF02297.1;transl_table=11 CP098604.1 Genbank gene 4891199 4894441 . + . ID=gene-NDY25_20925;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=NDY25_20925 CP098604.1 Protein Homology CDS 4891199 4894441 . + 0 ID=cds-UUF02298.1;Parent=gene-NDY25_20925;Dbxref=NCBI_GP:UUF02298.1;Name=UUF02298.1;Ontology_term=GO:0006807,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=nitrogen compound metabolic process|0006807||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806440.1;locus_tag=NDY25_20925;product=carbamoyl-phosphate synthase large subunit;protein_id=UUF02298.1;transl_table=11 CP098604.1 Genbank gene 4894450 4894914 . + . ID=gene-NDY25_20930;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=NDY25_20930 CP098604.1 Protein Homology CDS 4894450 4894914 . + 0 ID=cds-UUF02299.1;Parent=gene-NDY25_20930;Dbxref=NCBI_GP:UUF02299.1;Name=UUF02299.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription%2C elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507602.1;locus_tag=NDY25_20930;product=transcription elongation factor GreA;protein_id=UUF02299.1;transl_table=11 CP098604.1 Genbank gene 4894958 4895878 . + . ID=gene-NDY25_20935;Name=NDY25_20935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20935 CP098604.1 Protein Homology CDS 4894958 4895878 . + 0 ID=cds-UUF02300.1;Parent=gene-NDY25_20935;Dbxref=NCBI_GP:UUF02300.1;Name=UUF02300.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806444.1;locus_tag=NDY25_20935;product=phosphoglycerate mutase;protein_id=UUF02300.1;transl_table=11 CP098604.1 Genbank gene 4895875 4897614 . + . ID=gene-NDY25_20940;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=NDY25_20940 CP098604.1 Protein Homology CDS 4895875 4897614 . + 0 ID=cds-UUF02301.1;Parent=gene-NDY25_20940;Dbxref=NCBI_GP:UUF02301.1;Name=UUF02301.1;Ontology_term=GO:0006310,GO:0008297;gbkey=CDS;gene=recJ;go_function=single-stranded DNA exodeoxyribonuclease activity|0008297||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008571481.1;locus_tag=NDY25_20940;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=UUF02301.1;transl_table=11 CP098604.1 Genbank gene 4898454 4899491 . - . ID=gene-NDY25_20945;Name=NDY25_20945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20945 CP098604.1 Protein Homology CDS 4898454 4899491 . - 0 ID=cds-UUF02302.1;Parent=gene-NDY25_20945;Dbxref=NCBI_GP:UUF02302.1;Name=UUF02302.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903169.1;locus_tag=NDY25_20945;product=DUF1176 domain-containing protein;protein_id=UUF02302.1;transl_table=11 CP098604.1 Genbank gene 4899593 4900807 . - . ID=gene-NDY25_20950;Name=NDY25_20950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20950 CP098604.1 Protein Homology CDS 4899593 4900807 . - 0 ID=cds-UUF04739.1;Parent=gene-NDY25_20950;Dbxref=NCBI_GP:UUF04739.1;Name=UUF04739.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903170.1;locus_tag=NDY25_20950;product=acyltransferase family protein;protein_id=UUF04739.1;transl_table=11 CP098604.1 Genbank gene 4900959 4901882 . + . ID=gene-NDY25_20955;Name=NDY25_20955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20955 CP098604.1 Protein Homology CDS 4900959 4901882 . + 0 ID=cds-UUF02303.1;Parent=gene-NDY25_20955;Dbxref=NCBI_GP:UUF02303.1;Name=UUF02303.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903171.1;locus_tag=NDY25_20955;product=LytTR family transcriptional regulator;protein_id=UUF02303.1;transl_table=11 CP098604.1 Genbank gene 4902105 4903230 . + . ID=gene-NDY25_20960;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=NDY25_20960 CP098604.1 Protein Homology CDS 4902105 4902179 . + 0 ID=cds-UUF02304.1;Parent=gene-NDY25_20960;Dbxref=NCBI_GP:UUF02304.1;Name=UUF02304.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503214.1;locus_tag=NDY25_20960;product=peptide chain release factor 2;protein_id=UUF02304.1;transl_table=11 CP098604.1 Protein Homology CDS 4902181 4903230 . + 0 ID=cds-UUF02304.1;Parent=gene-NDY25_20960;Dbxref=NCBI_GP:UUF02304.1;Name=UUF02304.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0003747;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503214.1;locus_tag=NDY25_20960;product=peptide chain release factor 2;protein_id=UUF02304.1;transl_table=11 CP098604.1 Genbank gene 4903451 4904968 . + . ID=gene-NDY25_20965;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=NDY25_20965 CP098604.1 Protein Homology CDS 4903451 4904968 . + 0 ID=cds-UUF02305.1;Parent=gene-NDY25_20965;Dbxref=NCBI_GP:UUF02305.1;Name=UUF02305.1;Ontology_term=GO:0006430,GO:0004824,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486300.1;locus_tag=NDY25_20965;product=lysine--tRNA ligase;protein_id=UUF02305.1;transl_table=11 CP098604.1 Genbank gene 4905107 4906243 . + . ID=gene-NDY25_20970;Name=NDY25_20970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20970 CP098604.1 Protein Homology CDS 4905107 4906243 . + 0 ID=cds-UUF02306.1;Parent=gene-NDY25_20970;Dbxref=NCBI_GP:UUF02306.1;Name=UUF02306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005922786.1;locus_tag=NDY25_20970;product=two-component system response regulator;protein_id=UUF02306.1;transl_table=11 CP098604.1 Genbank gene 4906254 4906871 . + . ID=gene-NDY25_20975;Name=NDY25_20975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20975 CP098604.1 Protein Homology CDS 4906254 4906871 . + 0 ID=cds-UUF04740.1;Parent=gene-NDY25_20975;Dbxref=NCBI_GP:UUF04740.1;Name=UUF04740.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159452.1;locus_tag=NDY25_20975;product=RpfH protein;protein_id=UUF04740.1;transl_table=11 CP098604.1 Genbank gene 4906879 4909053 . + . ID=gene-NDY25_20980;Name=NDY25_20980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20980 CP098604.1 Protein Homology CDS 4906879 4909053 . + 0 ID=cds-UUF02307.1;Parent=gene-NDY25_20980;Dbxref=NCBI_GP:UUF02307.1;Name=UUF02307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017174224.1;locus_tag=NDY25_20980;product=ATP-binding protein;protein_id=UUF02307.1;transl_table=11 CP098604.1 Genbank gene 4909067 4909936 . - . ID=gene-NDY25_20985;Name=NDY25_20985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20985 CP098604.1 Protein Homology CDS 4909067 4909936 . - 0 ID=cds-UUF02308.1;Parent=gene-NDY25_20985;Dbxref=NCBI_GP:UUF02308.1;Name=UUF02308.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486308.1;locus_tag=NDY25_20985;product=crotonase/enoyl-CoA hydratase family protein;protein_id=UUF02308.1;transl_table=11 CP098604.1 Genbank gene 4910115 4911797 . - . ID=gene-NDY25_20990;Name=NDY25_20990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20990 CP098604.1 Protein Homology CDS 4910115 4911797 . - 0 ID=cds-UUF02309.1;Parent=gene-NDY25_20990;Dbxref=NCBI_GP:UUF02309.1;Name=UUF02309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005930006.1;locus_tag=NDY25_20990;product=long-chain fatty acid--CoA ligase;protein_id=UUF02309.1;transl_table=11 CP098604.1 Genbank gene 4911895 4912344 . + . ID=gene-NDY25_20995;Name=NDY25_20995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_20995 CP098604.1 Protein Homology CDS 4911895 4912344 . + 0 ID=cds-UUF02310.1;Parent=gene-NDY25_20995;Dbxref=NCBI_GP:UUF02310.1;Name=UUF02310.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903178.1;locus_tag=NDY25_20995;product=nuclear transport factor 2 family protein;protein_id=UUF02310.1;transl_table=11 CP098604.1 Genbank gene 4912420 4915188 . - . ID=gene-NDY25_21000;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=NDY25_21000 CP098604.1 Protein Homology CDS 4912420 4915188 . - 0 ID=cds-UUF02311.1;Parent=gene-NDY25_21000;Dbxref=NCBI_GP:UUF02311.1;Name=UUF02311.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159833.1;locus_tag=NDY25_21000;product=aconitate hydratase AcnA;protein_id=UUF02311.1;transl_table=11 CP098604.1 Genbank gene 4915340 4915588 . + . ID=gene-NDY25_21005;Name=NDY25_21005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21005 CP098604.1 Protein Homology CDS 4915340 4915588 . + 0 ID=cds-UUF02312.1;Parent=gene-NDY25_21005;Dbxref=NCBI_GP:UUF02312.1;Name=UUF02312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115874.1;locus_tag=NDY25_21005;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=UUF02312.1;transl_table=11 CP098604.1 Genbank gene 4915585 4915995 . + . ID=gene-NDY25_21010;Name=NDY25_21010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21010 CP098604.1 Protein Homology CDS 4915585 4915995 . + 0 ID=cds-UUF02313.1;Parent=gene-NDY25_21010;Dbxref=NCBI_GP:UUF02313.1;Name=UUF02313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259444.1;locus_tag=NDY25_21010;product=type II toxin-antitoxin system VapC family toxin;protein_id=UUF02313.1;transl_table=11 CP098604.1 Genbank gene 4916071 4918662 . + . ID=gene-NDY25_21015;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=NDY25_21015 CP098604.1 Protein Homology CDS 4916071 4918662 . + 0 ID=cds-UUF02314.1;Parent=gene-NDY25_21015;Dbxref=NCBI_GP:UUF02314.1;Name=UUF02314.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnB;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908727.1;locus_tag=NDY25_21015;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=UUF02314.1;transl_table=11 CP098604.1 Genbank pseudogene 4918859 4919706 . + . ID=gene-NDY25_21020;Name=NDY25_21020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21020;pseudo=true CP098604.1 Protein Homology CDS 4918859 4919706 . + 0 ID=cds-NDY25_21020;Parent=gene-NDY25_21020;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451231.1;locus_tag=NDY25_21020;product=alpha/beta fold hydrolase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4920253 4920329 . - . ID=gene-NDY25_21025;Name=NDY25_21025;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_21025 CP098604.1 cmsearch ncRNA 4920253 4920329 . - . ID=rna-NDY25_21025;Parent=gene-NDY25_21025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_21025;product=sX9 sRNA CP098604.1 cmsearch exon 4920253 4920329 . - . ID=exon-NDY25_21025-1;Parent=rna-NDY25_21025;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_21025;product=sX9 sRNA CP098604.1 Genbank gene 4920388 4922730 . - . ID=gene-NDY25_21030;Name=NDY25_21030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21030 CP098604.1 Protein Homology CDS 4920388 4922730 . - 0 ID=cds-UUF02315.1;Parent=gene-NDY25_21030;Dbxref=NCBI_GP:UUF02315.1;Name=UUF02315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019303209.1;locus_tag=NDY25_21030;product=EAL domain-containing protein;protein_id=UUF02315.1;transl_table=11 CP098604.1 Genbank gene 4922737 4923813 . - . ID=gene-NDY25_21035;Name=NDY25_21035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21035 CP098604.1 Protein Homology CDS 4922737 4923813 . - 0 ID=cds-UUF02316.1;Parent=gene-NDY25_21035;Dbxref=NCBI_GP:UUF02316.1;Name=UUF02316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914919.1;locus_tag=NDY25_21035;product=chemotaxis response regulator protein-glutamate methylesterase;protein_id=UUF02316.1;transl_table=11 CP098604.1 Genbank gene 4923810 4924406 . - . ID=gene-NDY25_21040;Name=cheD;gbkey=Gene;gene=cheD;gene_biotype=protein_coding;locus_tag=NDY25_21040 CP098604.1 Protein Homology CDS 4923810 4924406 . - 0 ID=cds-UUF02317.1;Parent=gene-NDY25_21040;Dbxref=NCBI_GP:UUF02317.1;Name=UUF02317.1;Ontology_term=GO:0006935,GO:0050568;gbkey=CDS;gene=cheD;go_function=protein-glutamine glutaminase activity|0050568||IEA;go_process=chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486330.1;locus_tag=NDY25_21040;product=chemoreceptor glutamine deamidase CheD;protein_id=UUF02317.1;transl_table=11 CP098604.1 Genbank gene 4924403 4925266 . - . ID=gene-NDY25_21045;Name=NDY25_21045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21045 CP098604.1 Protein Homology CDS 4924403 4925266 . - 0 ID=cds-UUF02318.1;Parent=gene-NDY25_21045;Dbxref=NCBI_GP:UUF02318.1;Name=UUF02318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448346.1;locus_tag=NDY25_21045;product=chemotaxis protein CheR;protein_id=UUF02318.1;transl_table=11 CP098604.1 Genbank gene 4925508 4927886 . - . ID=gene-NDY25_21050;Name=NDY25_21050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21050 CP098604.1 Protein Homology CDS 4925508 4927886 . - 0 ID=cds-UUF02319.1;Parent=gene-NDY25_21050;Dbxref=NCBI_GP:UUF02319.1;Name=UUF02319.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486335.1;locus_tag=NDY25_21050;product=methyl-accepting chemotaxis protein;protein_id=UUF02319.1;transl_table=11 CP098604.1 Genbank gene 4927971 4928354 . - . ID=gene-NDY25_21055;Name=NDY25_21055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21055 CP098604.1 Protein Homology CDS 4927971 4928354 . - 0 ID=cds-UUF02320.1;Parent=gene-NDY25_21055;Dbxref=NCBI_GP:UUF02320.1;Name=UUF02320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486337.1;locus_tag=NDY25_21055;product=hypothetical protein;protein_id=UUF02320.1;transl_table=11 CP098604.1 Genbank gene 4928667 4929152 . - . ID=gene-NDY25_21060;Name=NDY25_21060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21060 CP098604.1 Protein Homology CDS 4928667 4929152 . - 0 ID=cds-UUF02321.1;Parent=gene-NDY25_21060;Dbxref=NCBI_GP:UUF02321.1;Name=UUF02321.1;Ontology_term=GO:0006935,GO:0007165;gbkey=CDS;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003486339.1;locus_tag=NDY25_21060;product=chemotaxis protein CheW;protein_id=UUF02321.1;transl_table=11 CP098604.1 Genbank gene 4929300 4930085 . - . ID=gene-NDY25_21065;Name=NDY25_21065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21065 CP098604.1 Protein Homology CDS 4929300 4930085 . - 0 ID=cds-UUF02322.1;Parent=gene-NDY25_21065;Dbxref=NCBI_GP:UUF02322.1;Name=UUF02322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159446.1;locus_tag=NDY25_21065;product=flagellar brake protein;protein_id=UUF02322.1;transl_table=11 CP098604.1 Genbank gene 4931088 4933760 . - . ID=gene-NDY25_21070;Name=NDY25_21070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21070 CP098604.1 Protein Homology CDS 4931088 4933760 . - 0 ID=cds-UUF02323.1;Parent=gene-NDY25_21070;Dbxref=NCBI_GP:UUF02323.1;Name=UUF02323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005993873.1;locus_tag=NDY25_21070;product=Cache 3/Cache 2 fusion domain-containing protein;protein_id=UUF02323.1;transl_table=11 CP098604.1 Genbank gene 4934111 4936369 . - . ID=gene-NDY25_21075;Name=NDY25_21075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21075 CP098604.1 Protein Homology CDS 4934111 4936369 . - 0 ID=cds-UUF02324.1;Parent=gene-NDY25_21075;Dbxref=NCBI_GP:UUF02324.1;Name=UUF02324.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155261.1;locus_tag=NDY25_21075;product=methyl-accepting chemotaxis protein;protein_id=UUF02324.1;transl_table=11 CP098604.1 Genbank pseudogene 4936898 4939155 . - . ID=gene-NDY25_21080;Name=NDY25_21080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21080;pseudo=true CP098604.1 Protein Homology CDS 4936898 4939155 . - 0 ID=cds-NDY25_21080;Parent=gene-NDY25_21080;Note=frameshifted;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155261.1;locus_tag=NDY25_21080;product=methyl-accepting chemotaxis protein;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 4939626 4942101 . - . ID=gene-NDY25_21085;Name=NDY25_21085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21085;pseudo=true CP098604.1 Protein Homology CDS 4939626 4942101 . - 0 ID=cds-NDY25_21085;Parent=gene-NDY25_21085;Note=frameshifted;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113373.1;locus_tag=NDY25_21085;product=methyl-accepting chemotaxis protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4942191 4944440 . - . ID=gene-NDY25_21090;Name=NDY25_21090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21090 CP098604.1 Protein Homology CDS 4942191 4944440 . - 0 ID=cds-UUF02325.1;Parent=gene-NDY25_21090;Dbxref=NCBI_GP:UUF02325.1;Name=UUF02325.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037047.1;locus_tag=NDY25_21090;product=methyl-accepting chemotaxis protein;protein_id=UUF02325.1;transl_table=11 CP098604.1 Genbank gene 4944830 4947133 . - . ID=gene-NDY25_21095;Name=NDY25_21095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21095 CP098604.1 Protein Homology CDS 4944830 4947133 . - 0 ID=cds-UUF02326.1;Parent=gene-NDY25_21095;Dbxref=NCBI_GP:UUF02326.1;Name=UUF02326.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155256.1;locus_tag=NDY25_21095;product=methyl-accepting chemotaxis protein;protein_id=UUF02326.1;transl_table=11 CP098604.1 Genbank gene 4947360 4950161 . - . ID=gene-NDY25_21100;Name=NDY25_21100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21100 CP098604.1 Protein Homology CDS 4947360 4950161 . - 0 ID=cds-UUF02327.1;Parent=gene-NDY25_21100;Dbxref=NCBI_GP:UUF02327.1;Name=UUF02327.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090085.1;locus_tag=NDY25_21100;product=methyl-accepting chemotaxis protein;protein_id=UUF02327.1;transl_table=11 CP098604.1 Genbank gene 4950217 4952394 . - . ID=gene-NDY25_21105;Name=NDY25_21105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21105 CP098604.1 Protein Homology CDS 4950217 4952394 . - 0 ID=cds-UUF02328.1;Parent=gene-NDY25_21105;Dbxref=NCBI_GP:UUF02328.1;Name=UUF02328.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507632.1;locus_tag=NDY25_21105;product=methyl-accepting chemotaxis protein;protein_id=UUF02328.1;transl_table=11 CP098604.1 Genbank gene 4952742 4953275 . - . ID=gene-NDY25_21110;Name=NDY25_21110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21110 CP098604.1 Protein Homology CDS 4952742 4953275 . - 0 ID=cds-UUF02329.1;Parent=gene-NDY25_21110;Dbxref=NCBI_GP:UUF02329.1;Name=UUF02329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051219.1;locus_tag=NDY25_21110;product=hypothetical protein;protein_id=UUF02329.1;transl_table=11 CP098604.1 Genbank gene 4953971 4955575 . - . ID=gene-NDY25_21115;Name=NDY25_21115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21115 CP098604.1 Protein Homology CDS 4953971 4955575 . - 0 ID=cds-UUF04741.1;Parent=gene-NDY25_21115;Dbxref=NCBI_GP:UUF04741.1;Name=UUF04741.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051220.1;locus_tag=NDY25_21115;product=methyl-accepting chemotaxis protein;protein_id=UUF04741.1;transl_table=11 CP098604.1 Genbank pseudogene 4955660 4956118 . - . ID=gene-NDY25_21120;Name=NDY25_21120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21120;pseudo=true CP098604.1 Protein Homology CDS 4955660 4956118 . - 0 ID=cds-NDY25_21120;Parent=gene-NDY25_21120;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024140.2;locus_tag=NDY25_21120;product=MCP four helix bundle domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4956779 4958779 . - . ID=gene-NDY25_21125;Name=NDY25_21125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21125 CP098604.1 Protein Homology CDS 4956779 4958779 . - 0 ID=cds-UUF02330.1;Parent=gene-NDY25_21125;Dbxref=NCBI_GP:UUF02330.1;Name=UUF02330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008577777.1;locus_tag=NDY25_21125;product=chemotaxis protein CheA;protein_id=UUF02330.1;transl_table=11 CP098604.1 Genbank gene 4958813 4959178 . - . ID=gene-NDY25_21130;Name=NDY25_21130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21130 CP098604.1 Protein Homology CDS 4958813 4959178 . - 0 ID=cds-UUF02331.1;Parent=gene-NDY25_21130;Dbxref=NCBI_GP:UUF02331.1;Name=UUF02331.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806565.1;locus_tag=NDY25_21130;product=response regulator;protein_id=UUF02331.1;transl_table=11 CP098604.1 Genbank gene 4959175 4959483 . - . ID=gene-NDY25_21135;Name=NDY25_21135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21135 CP098604.1 Protein Homology CDS 4959175 4959483 . - 0 ID=cds-UUF02332.1;Parent=gene-NDY25_21135;Dbxref=NCBI_GP:UUF02332.1;Name=UUF02332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302363.1;locus_tag=NDY25_21135;product=STAS domain-containing protein;protein_id=UUF02332.1;transl_table=11 CP098604.1 Genbank gene 4959587 4960822 . - . ID=gene-NDY25_21140;Name=NDY25_21140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21140 CP098604.1 Protein Homology CDS 4959587 4960822 . - 0 ID=cds-UUF02333.1;Parent=gene-NDY25_21140;Dbxref=NCBI_GP:UUF02333.1;Name=UUF02333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003489694.1;locus_tag=NDY25_21140;product=chemotaxis protein CheW;protein_id=UUF02333.1;transl_table=11 CP098604.1 Genbank gene 4960819 4961601 . - . ID=gene-NDY25_21145;Name=NDY25_21145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21145 CP098604.1 Protein Homology CDS 4960819 4961601 . - 0 ID=cds-UUF02334.1;Parent=gene-NDY25_21145;Dbxref=NCBI_GP:UUF02334.1;Name=UUF02334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503257.1;locus_tag=NDY25_21145;product=ParA family protein;protein_id=UUF02334.1;transl_table=11 CP098604.1 Genbank pseudogene 4961603 4962578 . - . ID=gene-NDY25_21150;Name=motD;gbkey=Gene;gene=motD;gene_biotype=pseudogene;locus_tag=NDY25_21150;pseudo=true CP098604.1 Protein Homology CDS 4961603 4962578 . - 0 ID=cds-NDY25_21150;Parent=gene-NDY25_21150;Note=frameshifted;gbkey=CDS;gene=motD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005931860.1;locus_tag=NDY25_21150;product=flagellar motor protein MotD;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4962586 4963326 . - . ID=gene-NDY25_21155;Name=NDY25_21155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21155 CP098604.1 Protein Homology CDS 4962586 4963326 . - 0 ID=cds-UUF02335.1;Parent=gene-NDY25_21155;Dbxref=NCBI_GP:UUF02335.1;Name=UUF02335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002806574.1;locus_tag=NDY25_21155;product=flagellar motor protein;protein_id=UUF02335.1;transl_table=11 CP098604.1 Genbank pseudogene 4963951 4964157 . + . ID=gene-NDY25_21160;Name=NDY25_21160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21160;pseudo=true CP098604.1 Protein Homology CDS 4963951 4964157 . + 0 ID=cds-NDY25_21160;Parent=gene-NDY25_21160;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010952670.1;locus_tag=NDY25_21160;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4964167 4964466 . + . ID=gene-NDY25_21165;Name=NDY25_21165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21165 CP098604.1 Protein Homology CDS 4964167 4964466 . + 0 ID=cds-UUF02336.1;Parent=gene-NDY25_21165;Dbxref=NCBI_GP:UUF02336.1;Name=UUF02336.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450903.1;locus_tag=NDY25_21165;product=HigA family addiction module antitoxin;protein_id=UUF02336.1;transl_table=11 CP098604.1 Genbank gene 4964677 4965543 . - . ID=gene-NDY25_21170;Name=NDY25_21170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21170 CP098604.1 Protein Homology CDS 4964677 4965543 . - 0 ID=cds-UUF02337.1;Parent=gene-NDY25_21170;Dbxref=NCBI_GP:UUF02337.1;Name=UUF02337.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012801.2;locus_tag=NDY25_21170;product=TonB-dependent receptor;protein_id=UUF02337.1;transl_table=11 CP098604.1 Genbank gene 4965447 4965689 . - . ID=gene-NDY25_21175;Name=NDY25_21175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21175 CP098604.1 GeneMarkS-2+ CDS 4965447 4965689 . - 0 ID=cds-UUF02338.1;Parent=gene-NDY25_21175;Dbxref=NCBI_GP:UUF02338.1;Name=UUF02338.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21175;product=hypothetical protein;protein_id=UUF02338.1;transl_table=11 CP098604.1 Genbank gene 4965695 4966822 . - . ID=gene-NDY25_21180;Name=NDY25_21180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21180 CP098604.1 Protein Homology CDS 4965695 4966822 . - 0 ID=cds-UUF02339.1;Parent=gene-NDY25_21180;Dbxref=NCBI_GP:UUF02339.1;Name=UUF02339.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019335.2;locus_tag=NDY25_21180;product=TonB-dependent receptor plug domain-containing protein;protein_id=UUF02339.1;transl_table=11 CP098604.1 Genbank gene 4966904 4967830 . - . ID=gene-NDY25_21185;Name=NDY25_21185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21185 CP098604.1 GeneMarkS-2+ CDS 4966904 4967830 . - 0 ID=cds-UUF02340.1;Parent=gene-NDY25_21185;Dbxref=NCBI_GP:UUF02340.1;Name=UUF02340.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21185;product=hypothetical protein;protein_id=UUF02340.1;transl_table=11 CP098604.1 Genbank gene 4968525 4969478 . - . ID=gene-NDY25_21190;Name=NDY25_21190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21190 CP098604.1 GeneMarkS-2+ CDS 4968525 4969478 . - 0 ID=cds-UUF02341.1;Parent=gene-NDY25_21190;Dbxref=NCBI_GP:UUF02341.1;Name=UUF02341.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21190;product=hypothetical protein;protein_id=UUF02341.1;transl_table=11 CP098604.1 Genbank gene 4969627 4970346 . + . ID=gene-NDY25_21195;Name=NDY25_21195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21195 CP098604.1 GeneMarkS-2+ CDS 4969627 4970346 . + 0 ID=cds-UUF02342.1;Parent=gene-NDY25_21195;Dbxref=NCBI_GP:UUF02342.1;Name=UUF02342.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21195;product=hypothetical protein;protein_id=UUF02342.1;transl_table=11 CP098604.1 Genbank gene 4970298 4971188 . - . ID=gene-NDY25_21200;Name=NDY25_21200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21200 CP098604.1 Protein Homology CDS 4970298 4971188 . - 0 ID=cds-UUF02343.1;Parent=gene-NDY25_21200;Dbxref=NCBI_GP:UUF02343.1;Name=UUF02343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019659375.1;locus_tag=NDY25_21200;product=ABC transporter ATP-binding protein;protein_id=UUF02343.1;transl_table=11 CP098604.1 Genbank gene 4971753 4972508 . - . ID=gene-NDY25_21205;Name=NDY25_21205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21205 CP098604.1 Protein Homology CDS 4971753 4972508 . - 0 ID=cds-UUF02344.1;Parent=gene-NDY25_21205;Dbxref=NCBI_GP:UUF02344.1;Name=UUF02344.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019846.2;locus_tag=NDY25_21205;product=class I SAM-dependent methyltransferase;protein_id=UUF02344.1;transl_table=11 CP098604.1 Genbank gene 4972611 4973918 . - . ID=gene-NDY25_21210;Name=NDY25_21210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21210 CP098604.1 Protein Homology CDS 4972611 4973918 . - 0 ID=cds-UUF04742.1;Parent=gene-NDY25_21210;Dbxref=NCBI_GP:UUF04742.1;Name=UUF04742.1;Ontology_term=GO:0009058,GO:0008909,GO:0043904;gbkey=CDS;go_function=isochorismate synthase activity|0008909||IEA,isochorismate pyruvate lyase activity|0043904||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: protein motif:HMM:TIGR03494.1;locus_tag=NDY25_21210;product=salicylate synthase;protein_id=UUF04742.1;transl_table=11 CP098604.1 Genbank pseudogene 4973988 4975580 . - . ID=gene-NDY25_21215;Name=NDY25_21215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21215;pseudo=true CP098604.1 Protein Homology CDS 4973988 4975580 . - 0 ID=cds-NDY25_21215;Parent=gene-NDY25_21215;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001088826.1;locus_tag=NDY25_21215;product=AMP-binding protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 4975585 4976055 . - . ID=gene-NDY25_21220;Name=NDY25_21220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21220 CP098604.1 Protein Homology CDS 4975585 4976055 . - 0 ID=cds-UUF04743.1;Parent=gene-NDY25_21220;Dbxref=NCBI_GP:UUF04743.1;Name=UUF04743.1;Ontology_term=GO:0009058;gbkey=CDS;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: protein motif:HMM:NF013166.2;locus_tag=NDY25_21220;product=thioesterase domain-containing protein;protein_id=UUF04743.1;transl_table=11 CP098604.1 Genbank gene 4975938 4976360 . - . ID=gene-NDY25_21225;Name=NDY25_21225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21225 CP098604.1 Protein Homology CDS 4975938 4976360 . - 0 ID=cds-UUF02345.1;Parent=gene-NDY25_21225;Dbxref=NCBI_GP:UUF02345.1;Name=UUF02345.1;Ontology_term=GO:0009058;gbkey=CDS;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: protein motif:HMM:NF013166.2;locus_tag=NDY25_21225;product=thioesterase domain-containing protein;protein_id=UUF02345.1;transl_table=11 CP098604.1 Genbank gene 4976357 4977463 . - . ID=gene-NDY25_21230;Name=NDY25_21230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21230 CP098604.1 Protein Homology CDS 4976357 4977463 . - 0 ID=cds-UUF02346.1;Parent=gene-NDY25_21230;Dbxref=NCBI_GP:UUF02346.1;Name=UUF02346.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:TIGR01761.1;locus_tag=NDY25_21230;product=Gfo/Idh/MocA family oxidoreductase;protein_id=UUF02346.1;transl_table=11 CP098604.1 Genbank gene 4977489 4977746 . - . ID=gene-NDY25_21235;Name=NDY25_21235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21235 CP098604.1 GeneMarkS-2+ CDS 4977489 4977746 . - 0 ID=cds-UUF02347.1;Parent=gene-NDY25_21235;Dbxref=NCBI_GP:UUF02347.1;Name=UUF02347.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21235;product=hypothetical protein;protein_id=UUF02347.1;transl_table=11 CP098604.1 Genbank gene 4977683 4979284 . - . ID=gene-NDY25_21240;Name=NDY25_21240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21240 CP098604.1 Protein Homology CDS 4977683 4979284 . - 0 ID=cds-UUF02348.1;Parent=gene-NDY25_21240;Dbxref=NCBI_GP:UUF02348.1;Name=UUF02348.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024880.2;locus_tag=NDY25_21240;product=methyltransferase;protein_id=UUF02348.1;transl_table=11 CP098604.1 Genbank gene 4979269 4986351 . - . ID=gene-NDY25_21245;Name=NDY25_21245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21245 CP098604.1 Protein Homology CDS 4979269 4986351 . - 0 ID=cds-UUF04744.1;Parent=gene-NDY25_21245;Dbxref=NCBI_GP:UUF04744.1;Name=UUF04744.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012873.2;locus_tag=NDY25_21245;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=UUF04744.1;transl_table=11 CP098604.1 Genbank gene 4986261 4987193 . - . ID=gene-NDY25_21250;Name=NDY25_21250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21250 CP098604.1 Protein Homology CDS 4986261 4987193 . - 0 ID=cds-UUF02349.1;Parent=gene-NDY25_21250;Dbxref=NCBI_GP:UUF02349.1;Name=UUF02349.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012337.2;locus_tag=NDY25_21250;product=polyketide synthase;protein_id=UUF02349.1;transl_table=11 CP098604.1 Genbank gene 4987186 4988430 . - . ID=gene-NDY25_21255;Name=NDY25_21255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21255 CP098604.1 GeneMarkS-2+ CDS 4987186 4988430 . - 0 ID=cds-UUF02350.1;Parent=gene-NDY25_21255;Dbxref=NCBI_GP:UUF02350.1;Name=UUF02350.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21255;product=hypothetical protein;protein_id=UUF02350.1;transl_table=11 CP098604.1 Genbank gene 4988427 4994678 . - . ID=gene-NDY25_21260;Name=NDY25_21260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21260 CP098604.1 Protein Homology CDS 4988427 4994678 . - 0 ID=cds-UUF02351.1;Parent=gene-NDY25_21260;Dbxref=NCBI_GP:UUF02351.1;Name=UUF02351.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR01733.1;locus_tag=NDY25_21260;product=non-ribosomal peptide synthetase;protein_id=UUF02351.1;transl_table=11 CP098604.1 Genbank gene 4994766 4995203 . - . ID=gene-NDY25_21265;Name=NDY25_21265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21265 CP098604.1 GeneMarkS-2+ CDS 4994766 4995203 . - 0 ID=cds-UUF02352.1;Parent=gene-NDY25_21265;Dbxref=NCBI_GP:UUF02352.1;Name=UUF02352.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21265;product=hypothetical protein;protein_id=UUF02352.1;transl_table=11 CP098604.1 Genbank gene 4995458 4996423 . - . ID=gene-NDY25_21270;Name=NDY25_21270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21270 CP098604.1 Protein Homology CDS 4995458 4996423 . - 0 ID=cds-UUF02353.1;Parent=gene-NDY25_21270;Dbxref=NCBI_GP:UUF02353.1;Name=UUF02353.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024242.2;locus_tag=NDY25_21270;product=AraC family transcriptional regulator;protein_id=UUF02353.1;transl_table=11 CP098604.1 Genbank gene 4996689 4998287 . + . ID=gene-NDY25_21275;Name=NDY25_21275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21275 CP098604.1 Protein Homology CDS 4996689 4998287 . + 0 ID=cds-UUF02354.1;Parent=gene-NDY25_21275;Dbxref=NCBI_GP:UUF02354.1;Name=UUF02354.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012801.2;locus_tag=NDY25_21275;product=TonB-dependent receptor;protein_id=UUF02354.1;transl_table=11 CP098604.1 Genbank gene 4998209 4998862 . + . ID=gene-NDY25_21280;Name=NDY25_21280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21280 CP098604.1 Protein Homology CDS 4998209 4998862 . + 0 ID=cds-UUF02355.1;Parent=gene-NDY25_21280;Dbxref=NCBI_GP:UUF02355.1;Name=UUF02355.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012801.2;locus_tag=NDY25_21280;product=TonB-dependent receptor;protein_id=UUF02355.1;transl_table=11 CP098604.1 Genbank gene 4998852 5000498 . + . ID=gene-NDY25_21285;Name=NDY25_21285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21285 CP098604.1 Protein Homology CDS 4998852 5000498 . + 0 ID=cds-UUF02356.1;Parent=gene-NDY25_21285;Dbxref=NCBI_GP:UUF02356.1;Name=UUF02356.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012869.2;locus_tag=NDY25_21285;product=ABC transporter ATP-binding protein/permease;protein_id=UUF02356.1;transl_table=11 CP098604.1 Genbank gene 5000402 5000755 . + . ID=gene-NDY25_21290;Name=NDY25_21290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21290 CP098604.1 Protein Homology CDS 5000402 5000755 . + 0 ID=cds-UUF04745.1;Parent=gene-NDY25_21290;Dbxref=NCBI_GP:UUF04745.1;Name=UUF04745.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=NDY25_21290;product=ABC transporter ATP-binding protein/permease;protein_id=UUF04745.1;transl_table=11 CP098604.1 Genbank gene 5000752 5002545 . + . ID=gene-NDY25_21295;Name=NDY25_21295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21295 CP098604.1 Protein Homology CDS 5000752 5002545 . + 0 ID=cds-UUF02357.1;Parent=gene-NDY25_21295;Dbxref=NCBI_GP:UUF02357.1;Name=UUF02357.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012235.2;locus_tag=NDY25_21295;product=ABC transporter ATP-binding protein/permease;protein_id=UUF02357.1;transl_table=11 CP098604.1 Genbank gene 5002724 5004382 . - . ID=gene-NDY25_21300;Name=NDY25_21300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21300 CP098604.1 Protein Homology CDS 5002724 5004382 . - 0 ID=cds-UUF02358.1;Parent=gene-NDY25_21300;Dbxref=NCBI_GP:UUF02358.1;Name=UUF02358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304939.1;locus_tag=NDY25_21300;product=chemotaxis protein CheA;protein_id=UUF02358.1;transl_table=11 CP098604.1 Genbank gene 5004385 5005011 . - . ID=gene-NDY25_21305;Name=NDY25_21305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21305 CP098604.1 Protein Homology CDS 5004385 5005011 . - 0 ID=cds-UUF02359.1;Parent=gene-NDY25_21305;Dbxref=NCBI_GP:UUF02359.1;Name=UUF02359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302999.1;locus_tag=NDY25_21305;product=protein phosphatase CheZ;protein_id=UUF02359.1;transl_table=11 CP098604.1 Genbank gene 5005011 5005403 . - . ID=gene-NDY25_21310;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=NDY25_21310 CP098604.1 Protein Homology CDS 5005011 5005403 . - 0 ID=cds-UUF02360.1;Parent=gene-NDY25_21310;Dbxref=NCBI_GP:UUF02360.1;Name=UUF02360.1;Ontology_term=GO:0000160;gbkey=CDS;gene=cheY;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507662.1;locus_tag=NDY25_21310;product=chemotaxis response regulator CheY;protein_id=UUF02360.1;transl_table=11 CP098604.1 Genbank gene 5005439 5006212 . - . ID=gene-NDY25_21315;Name=NDY25_21315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21315 CP098604.1 Protein Homology CDS 5005439 5006212 . - 0 ID=cds-UUF02361.1;Parent=gene-NDY25_21315;Dbxref=NCBI_GP:UUF02361.1;Name=UUF02361.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008576048.1;locus_tag=NDY25_21315;product=RNA polymerase sigma factor FliA;protein_id=UUF02361.1;transl_table=11 CP098604.1 Genbank gene 5006209 5007093 . - . ID=gene-NDY25_21320;Name=NDY25_21320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21320 CP098604.1 Protein Homology CDS 5006209 5007093 . - 0 ID=cds-UUF02362.1;Parent=gene-NDY25_21320;Dbxref=NCBI_GP:UUF02362.1;Name=UUF02362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010374294.1;locus_tag=NDY25_21320;product=MinD/ParA family protein;protein_id=UUF02362.1;transl_table=11 CP098604.1 Genbank gene 5007080 5008747 . - . ID=gene-NDY25_21325;Name=flhF;gbkey=Gene;gene=flhF;gene_biotype=protein_coding;locus_tag=NDY25_21325 CP098604.1 Protein Homology CDS 5007080 5008747 . - 0 ID=cds-UUF02363.1;Parent=gene-NDY25_21325;Dbxref=NCBI_GP:UUF02363.1;Name=UUF02363.1;Ontology_term=GO:0006614,GO:0044781,GO:0003924,GO:0005525;gbkey=CDS;gene=flhF;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154801.1;locus_tag=NDY25_21325;product=flagellar biosynthesis protein FlhF;protein_id=UUF02363.1;transl_table=11 CP098604.1 Genbank gene 5009307 5011400 . - . ID=gene-NDY25_21330;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=NDY25_21330 CP098604.1 Protein Homology CDS 5009307 5011400 . - 0 ID=cds-UUF02364.1;Parent=gene-NDY25_21330;Dbxref=NCBI_GP:UUF02364.1;Name=UUF02364.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=flhA;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302100.1;locus_tag=NDY25_21330;product=flagellar biosynthesis protein FlhA;protein_id=UUF02364.1;transl_table=11 CP098604.1 Genbank gene 5011397 5012527 . - . ID=gene-NDY25_21335;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=NDY25_21335 CP098604.1 Protein Homology CDS 5011397 5012527 . - 0 ID=cds-UUF02365.1;Parent=gene-NDY25_21335;Dbxref=NCBI_GP:UUF02365.1;Name=UUF02365.1;Ontology_term=GO:0001539;gbkey=CDS;gene=flhB;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921357.1;locus_tag=NDY25_21335;product=flagellar biosynthesis protein FlhB;protein_id=UUF02365.1;transl_table=11 CP098604.1 Genbank pseudogene 5012892 5014427 . - . ID=gene-NDY25_21340;Name=NDY25_21340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21340;pseudo=true CP098604.1 Protein Homology CDS 5012892 5014427 . - 0 ID=cds-NDY25_21340;Parent=gene-NDY25_21340;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970797.1;locus_tag=NDY25_21340;product=EAL domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5014529 5017450 . - . ID=gene-NDY25_21345;Name=NDY25_21345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21345 CP098604.1 Protein Homology CDS 5014529 5017450 . - 0 ID=cds-UUF04746.1;Parent=gene-NDY25_21345;Dbxref=NCBI_GP:UUF04746.1;Name=UUF04746.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090104.1;locus_tag=NDY25_21345;product=diguanylate cyclase;protein_id=UUF04746.1;transl_table=11 CP098604.1 Genbank gene 5017741 5020689 . - . ID=gene-NDY25_21350;Name=NDY25_21350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21350 CP098604.1 Protein Homology CDS 5017741 5020689 . - 0 ID=cds-UUF02366.1;Parent=gene-NDY25_21350;Dbxref=NCBI_GP:UUF02366.1;Name=UUF02366.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006449773.1;locus_tag=NDY25_21350;product=diguanylate cyclase;protein_id=UUF02366.1;transl_table=11 CP098604.1 Genbank gene 5020797 5021588 . - . ID=gene-NDY25_21355;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=NDY25_21355 CP098604.1 Protein Homology CDS 5020797 5021588 . - 0 ID=cds-UUF02367.1;Parent=gene-NDY25_21355;Dbxref=NCBI_GP:UUF02367.1;Name=UUF02367.1;Ontology_term=GO:0006605,GO:0044780,GO:0016021;gbkey=CDS;gene=fliR;go_component=integral component of membrane|0016021||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160558.1;locus_tag=NDY25_21355;product=flagellar biosynthetic protein FliR;protein_id=UUF02367.1;transl_table=11 CP098604.1 Genbank gene 5021602 5021871 . - . ID=gene-NDY25_21360;Name=NDY25_21360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21360 CP098604.1 Protein Homology CDS 5021602 5021871 . - 0 ID=cds-UUF02368.1;Parent=gene-NDY25_21360;Dbxref=NCBI_GP:UUF02368.1;Name=UUF02368.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037081.1;locus_tag=NDY25_21360;product=flagellar biosynthetic protein FliQ;protein_id=UUF02368.1;transl_table=11 CP098604.1 Genbank gene 5022177 5023016 . - . ID=gene-NDY25_21365;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=NDY25_21365 CP098604.1 Protein Homology CDS 5022177 5023016 . - 0 ID=cds-UUF02369.1;Parent=gene-NDY25_21365;Dbxref=NCBI_GP:UUF02369.1;Name=UUF02369.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0001539;gbkey=CDS;gene=fliP;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373751.1;locus_tag=NDY25_21365;product=flagellar type III secretion system pore protein FliP;protein_id=UUF02369.1;transl_table=11 CP098604.1 Genbank gene 5023018 5023425 . - . ID=gene-NDY25_21370;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=NDY25_21370 CP098604.1 Protein Homology CDS 5023018 5023425 . - 0 ID=cds-UUF02370.1;Parent=gene-NDY25_21370;Dbxref=NCBI_GP:UUF02370.1;Name=UUF02370.1;Ontology_term=GO:0044781;gbkey=CDS;gene=fliO;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158024.1;locus_tag=NDY25_21370;product=flagellar biosynthetic protein FliO;protein_id=UUF02370.1;transl_table=11 CP098604.1 Genbank gene 5023422 5023760 . - . ID=gene-NDY25_21375;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=NDY25_21375 CP098604.1 Protein Homology CDS 5023422 5023760 . - 0 ID=cds-UUF02371.1;Parent=gene-NDY25_21375;Dbxref=NCBI_GP:UUF02371.1;Name=UUF02371.1;Ontology_term=GO:0001539,GO:0003774,GO:0009288;gbkey=CDS;gene=fliN;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507674.1;locus_tag=NDY25_21375;product=flagellar motor switch protein FliN;protein_id=UUF02371.1;transl_table=11 CP098604.1 Genbank gene 5023757 5024770 . - . ID=gene-NDY25_21380;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=NDY25_21380 CP098604.1 Protein Homology CDS 5023757 5024770 . - 0 ID=cds-UUF02372.1;Parent=gene-NDY25_21380;Dbxref=NCBI_GP:UUF02372.1;Name=UUF02372.1;Ontology_term=GO:0071973,GO:0003774,GO:0009425;gbkey=CDS;gene=fliM;go_component=bacterial-type flagellum basal body|0009425||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302238.1;locus_tag=NDY25_21380;product=flagellar motor switch protein FliM;protein_id=UUF02372.1;transl_table=11 CP098604.1 Genbank gene 5024780 5025331 . - . ID=gene-NDY25_21385;Name=NDY25_21385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21385 CP098604.1 Protein Homology CDS 5024780 5025331 . - 0 ID=cds-UUF02373.1;Parent=gene-NDY25_21385;Dbxref=NCBI_GP:UUF02373.1;Name=UUF02373.1;Ontology_term=GO:0006935,GO:0071973,GO:0009425;gbkey=CDS;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158026.1;locus_tag=NDY25_21385;product=flagellar basal body-associated FliL family protein;protein_id=UUF02373.1;transl_table=11 CP098604.1 Genbank gene 5025496 5026797 . - . ID=gene-NDY25_21390;Name=NDY25_21390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21390 CP098604.1 Protein Homology CDS 5025496 5026797 . - 0 ID=cds-UUF02374.1;Parent=gene-NDY25_21390;Dbxref=NCBI_GP:UUF02374.1;Name=UUF02374.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159589.1;locus_tag=NDY25_21390;product=flagellar hook-length control protein FliK;protein_id=UUF02374.1;transl_table=11 CP098604.1 Genbank gene 5026794 5027249 . - . ID=gene-NDY25_21395;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=NDY25_21395 CP098604.1 Protein Homology CDS 5026794 5027249 . - 0 ID=cds-UUF02375.1;Parent=gene-NDY25_21395;Dbxref=NCBI_GP:UUF02375.1;Name=UUF02375.1;Ontology_term=GO:0006935,GO:0071973,GO:0003774,GO:0009288,GO:0016020;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA,membrane|0016020||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158028.1;locus_tag=NDY25_21395;product=flagellar export protein FliJ;protein_id=UUF02375.1;transl_table=11 CP098604.1 Genbank gene 5027253 5028635 . - . ID=gene-NDY25_21400;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=NDY25_21400 CP098604.1 Protein Homology CDS 5027253 5028635 . - 0 ID=cds-UUF02376.1;Parent=gene-NDY25_21400;Dbxref=NCBI_GP:UUF02376.1;Name=UUF02376.1;Ontology_term=GO:0001539,GO:0016887,GO:0009288;gbkey=CDS;gene=fliI;go_component=bacterial-type flagellum|0009288||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904676.1;locus_tag=NDY25_21400;product=flagellar protein export ATPase FliI;protein_id=UUF02376.1;transl_table=11 CP098604.1 Genbank gene 5028632 5029252 . - . ID=gene-NDY25_21405;Name=NDY25_21405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21405 CP098604.1 Protein Homology CDS 5028632 5029252 . - 0 ID=cds-UUF02377.1;Parent=gene-NDY25_21405;Dbxref=NCBI_GP:UUF02377.1;Name=UUF02377.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016850279.1;locus_tag=NDY25_21405;product=FliH/SctL family protein;protein_id=UUF02377.1;transl_table=11 CP098604.1 Genbank gene 5029249 5030238 . - . ID=gene-NDY25_21410;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=NDY25_21410 CP098604.1 Protein Homology CDS 5029249 5030238 . - 0 ID=cds-UUF02378.1;Parent=gene-NDY25_21410;Dbxref=NCBI_GP:UUF02378.1;Name=UUF02378.1;Ontology_term=GO:0001539,GO:0006935,GO:0005198,GO:0009433;gbkey=CDS;gene=fliG;go_component=bacterial-type flagellum basal body%2C C ring|0009433||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA,chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158030.1;locus_tag=NDY25_21410;product=flagellar motor switch protein FliG;protein_id=UUF02378.1;transl_table=11 CP098604.1 Genbank gene 5030249 5031979 . - . ID=gene-NDY25_21415;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=NDY25_21415 CP098604.1 Protein Homology CDS 5030249 5031979 . - 0 ID=cds-UUF02379.1;Parent=gene-NDY25_21415;Dbxref=NCBI_GP:UUF02379.1;Name=UUF02379.1;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158031.1;locus_tag=NDY25_21415;product=flagellar M-ring protein FliF;protein_id=UUF02379.1;transl_table=11 CP098604.1 Genbank gene 5031993 5032364 . - . ID=gene-NDY25_21420;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=NDY25_21420 CP098604.1 Protein Homology CDS 5031993 5032364 . - 0 ID=cds-UUF02380.1;Parent=gene-NDY25_21420;Dbxref=NCBI_GP:UUF02380.1;Name=UUF02380.1;Ontology_term=GO:0071973,GO:0003774,GO:0005198,GO:0009288;gbkey=CDS;gene=fliE;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA,structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997134.1;locus_tag=NDY25_21420;product=flagellar hook-basal body complex protein FliE;protein_id=UUF02380.1;transl_table=11 CP098604.1 Genbank gene 5033303 5036806 . - . ID=gene-NDY25_21425;Name=NDY25_21425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21425 CP098604.1 Protein Homology CDS 5033303 5036806 . - 0 ID=cds-UUF02381.1;Parent=gene-NDY25_21425;Dbxref=NCBI_GP:UUF02381.1;Name=UUF02381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158033.1;locus_tag=NDY25_21425;product=glycosyltransferase;protein_id=UUF02381.1;transl_table=11 CP098604.1 Genbank gene 5036984 5037538 . - . ID=gene-NDY25_21430;Name=NDY25_21430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21430 CP098604.1 Protein Homology CDS 5036984 5037538 . - 0 ID=cds-UUF02382.1;Parent=gene-NDY25_21430;Dbxref=NCBI_GP:UUF02382.1;Name=UUF02382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997137.1;locus_tag=NDY25_21430;product=methyltransferase domain-containing protein;protein_id=UUF02382.1;transl_table=11 CP098604.1 Genbank gene 5037535 5039349 . - . ID=gene-NDY25_21435;Name=NDY25_21435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21435 CP098604.1 GeneMarkS-2+ CDS 5037535 5039349 . - 0 ID=cds-UUF02383.1;Parent=gene-NDY25_21435;Dbxref=NCBI_GP:UUF02383.1;Name=UUF02383.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21435;product=class I SAM-dependent methyltransferase;protein_id=UUF02383.1;transl_table=11 CP098604.1 Genbank gene 5039450 5040430 . - . ID=gene-NDY25_21440;Name=NDY25_21440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21440 CP098604.1 Protein Homology CDS 5039450 5040430 . - 0 ID=cds-UUF02384.1;Parent=gene-NDY25_21440;Dbxref=NCBI_GP:UUF02384.1;Name=UUF02384.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_21440;product=IS5 family transposase;protein_id=UUF02384.1;transl_table=11 CP098604.1 Genbank gene 5040637 5042160 . - . ID=gene-NDY25_21445;Name=NDY25_21445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21445 CP098604.1 Protein Homology CDS 5040637 5042160 . - 0 ID=cds-UUF02385.1;Parent=gene-NDY25_21445;Dbxref=NCBI_GP:UUF02385.1;Name=UUF02385.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017118762.1;locus_tag=NDY25_21445;product=FkbM family methyltransferase;protein_id=UUF02385.1;transl_table=11 CP098604.1 Genbank gene 5042157 5042780 . - . ID=gene-NDY25_21450;Name=NDY25_21450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21450 CP098604.1 Protein Homology CDS 5042157 5042780 . - 0 ID=cds-UUF02386.1;Parent=gene-NDY25_21450;Dbxref=NCBI_GP:UUF02386.1;Name=UUF02386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848712.1;locus_tag=NDY25_21450;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=UUF02386.1;transl_table=11 CP098604.1 Genbank gene 5042770 5043915 . - . ID=gene-NDY25_21455;Name=NDY25_21455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21455 CP098604.1 Protein Homology CDS 5042770 5043915 . - 0 ID=cds-UUF02387.1;Parent=gene-NDY25_21455;Dbxref=NCBI_GP:UUF02387.1;Name=UUF02387.1;Ontology_term=GO:0051537;gbkey=CDS;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921325.1;locus_tag=NDY25_21455;product=Rieske 2Fe-2S domain-containing protein;protein_id=UUF02387.1;transl_table=11 CP098604.1 Genbank gene 5043929 5044594 . - . ID=gene-NDY25_21460;Name=NDY25_21460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21460 CP098604.1 Protein Homology CDS 5043929 5044594 . - 0 ID=cds-UUF02388.1;Parent=gene-NDY25_21460;Dbxref=NCBI_GP:UUF02388.1;Name=UUF02388.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997147.1;locus_tag=NDY25_21460;product=NeuD/PglB/VioB family sugar acetyltransferase;protein_id=UUF02388.1;transl_table=11 CP098604.1 Genbank gene 5044591 5045370 . - . ID=gene-NDY25_21465;Name=NDY25_21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21465 CP098604.1 Protein Homology CDS 5044591 5045370 . - 0 ID=cds-UUF02389.1;Parent=gene-NDY25_21465;Dbxref=NCBI_GP:UUF02389.1;Name=UUF02389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017908527.1;locus_tag=NDY25_21465;product=SDR family oxidoreductase;protein_id=UUF02389.1;transl_table=11 CP098604.1 Genbank gene 5045367 5046131 . - . ID=gene-NDY25_21470;Name=NDY25_21470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21470 CP098604.1 Protein Homology CDS 5045367 5046131 . - 0 ID=cds-UUF02390.1;Parent=gene-NDY25_21470;Dbxref=NCBI_GP:UUF02390.1;Name=UUF02390.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090117.1;locus_tag=NDY25_21470;product=SDR family oxidoreductase;protein_id=UUF02390.1;transl_table=11 CP098604.1 Genbank gene 5046131 5047171 . - . ID=gene-NDY25_21475;Name=NDY25_21475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21475 CP098604.1 Protein Homology CDS 5046131 5047171 . - 0 ID=cds-UUF02391.1;Parent=gene-NDY25_21475;Dbxref=NCBI_GP:UUF02391.1;Name=UUF02391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003466860.1;locus_tag=NDY25_21475;product=ketoacyl-ACP synthase III;protein_id=UUF02391.1;transl_table=11 CP098604.1 Genbank gene 5047177 5047401 . - . ID=gene-NDY25_21480;Name=NDY25_21480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21480 CP098604.1 Protein Homology CDS 5047177 5047401 . - 0 ID=cds-UUF02392.1;Parent=gene-NDY25_21480;Dbxref=NCBI_GP:UUF02392.1;Name=UUF02392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302780.1;locus_tag=NDY25_21480;product=acyl carrier protein;protein_id=UUF02392.1;transl_table=11 CP098604.1 Genbank gene 5047466 5048575 . - . ID=gene-NDY25_21485;Name=NDY25_21485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21485 CP098604.1 Protein Homology CDS 5047466 5048575 . - 0 ID=cds-UUF02393.1;Parent=gene-NDY25_21485;Dbxref=NCBI_GP:UUF02393.1;Name=UUF02393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373650.1;locus_tag=NDY25_21485;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=UUF02393.1;transl_table=11 CP098604.1 Genbank gene 5048697 5050181 . - . ID=gene-NDY25_21490;Name=NDY25_21490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21490 CP098604.1 Protein Homology CDS 5048697 5050181 . - 0 ID=cds-UUF02394.1;Parent=gene-NDY25_21490;Dbxref=NCBI_GP:UUF02394.1;Name=UUF02394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006452274.1;locus_tag=NDY25_21490;product=sigma-54 dependent transcriptional regulator;protein_id=UUF02394.1;transl_table=11 CP098604.1 Genbank gene 5050174 5050557 . - . ID=gene-NDY25_21495;Name=NDY25_21495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21495 CP098604.1 Protein Homology CDS 5050174 5050557 . - 0 ID=cds-UUF02395.1;Parent=gene-NDY25_21495;Dbxref=NCBI_GP:UUF02395.1;Name=UUF02395.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904817.1;locus_tag=NDY25_21495;product=response regulator transcription factor;protein_id=UUF02395.1;transl_table=11 CP098604.1 Genbank gene 5050566 5051969 . - . ID=gene-NDY25_21500;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=NDY25_21500 CP098604.1 Protein Homology CDS 5050566 5051969 . - 0 ID=cds-UUF02396.1;Parent=gene-NDY25_21500;Dbxref=NCBI_GP:UUF02396.1;Name=UUF02396.1;Ontology_term=GO:0006352,GO:0016987;gbkey=CDS;gene=rpoN;go_function=sigma factor activity|0016987||IEA;go_process=DNA-templated transcription%2C initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019302731.1;locus_tag=NDY25_21500;product=RNA polymerase factor sigma-54;protein_id=UUF02396.1;transl_table=11 CP098604.1 Genbank gene 5052193 5052825 . - . ID=gene-NDY25_21505;Name=NDY25_21505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21505 CP098604.1 Protein Homology CDS 5052193 5052825 . - 0 ID=cds-UUF02397.1;Parent=gene-NDY25_21505;Dbxref=NCBI_GP:UUF02397.1;Name=UUF02397.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037101.1;locus_tag=NDY25_21505;product=response regulator transcription factor;protein_id=UUF02397.1;transl_table=11 CP098604.1 Genbank gene 5052896 5053462 . - . ID=gene-NDY25_21510;Name=NDY25_21510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21510 CP098604.1 Protein Homology CDS 5052896 5053462 . - 0 ID=cds-UUF02398.1;Parent=gene-NDY25_21510;Dbxref=NCBI_GP:UUF02398.1;Name=UUF02398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154658.1;locus_tag=NDY25_21510;product=PilZ domain-containing protein;protein_id=UUF02398.1;transl_table=11 CP098604.1 Genbank gene 5053462 5053755 . - . ID=gene-NDY25_21515;Name=NDY25_21515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21515 CP098604.1 Protein Homology CDS 5053462 5053755 . - 0 ID=cds-UUF04747.1;Parent=gene-NDY25_21515;Dbxref=NCBI_GP:UUF04747.1;Name=UUF04747.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154657.1;locus_tag=NDY25_21515;product=hypothetical protein;protein_id=UUF04747.1;transl_table=11 CP098604.1 Genbank gene 5053764 5054177 . - . ID=gene-NDY25_21520;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=NDY25_21520 CP098604.1 Protein Homology CDS 5053764 5054177 . - 0 ID=cds-UUF02399.1;Parent=gene-NDY25_21520;Dbxref=NCBI_GP:UUF02399.1;Name=UUF02399.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliS;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575950.1;locus_tag=NDY25_21520;product=flagellar export chaperone FliS;protein_id=UUF02399.1;transl_table=11 CP098604.1 Genbank gene 5054328 5055653 . - . ID=gene-NDY25_21525;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=NDY25_21525 CP098604.1 Protein Homology CDS 5054328 5055653 . - 0 ID=cds-UUF02400.1;Parent=gene-NDY25_21525;Dbxref=NCBI_GP:UUF02400.1;Name=UUF02400.1;Ontology_term=GO:0009288;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005921315.1;locus_tag=NDY25_21525;product=flagellar filament capping protein FliD;protein_id=UUF02400.1;transl_table=11 CP098604.1 Genbank gene 5055902 5057101 . - . ID=gene-NDY25_21530;Name=NDY25_21530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21530 CP098604.1 Protein Homology CDS 5055902 5057101 . - 0 ID=cds-UUF02401.1;Parent=gene-NDY25_21530;Dbxref=NCBI_GP:UUF02401.1;Name=UUF02401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007962409.1;locus_tag=NDY25_21530;product=flagellin;protein_id=UUF02401.1;transl_table=11 CP098604.1 Genbank gene 5057419 5058624 . - . ID=gene-NDY25_21535;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=NDY25_21535 CP098604.1 Protein Homology CDS 5057419 5058624 . - 0 ID=cds-UUF02402.1;Parent=gene-NDY25_21535;Dbxref=NCBI_GP:UUF02402.1;Name=UUF02402.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154653.1;locus_tag=NDY25_21535;product=flagellar hook-associated protein FlgL;protein_id=UUF02402.1;transl_table=11 CP098604.1 Genbank gene 5058624 5060498 . - . ID=gene-NDY25_21540;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=NDY25_21540 CP098604.1 Protein Homology CDS 5058624 5060498 . - 0 ID=cds-UUF02403.1;Parent=gene-NDY25_21540;Dbxref=NCBI_GP:UUF02403.1;Name=UUF02403.1;gbkey=CDS;gene=flgK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019300294.1;locus_tag=NDY25_21540;product=flagellar hook-associated protein FlgK;protein_id=UUF02403.1;transl_table=11 CP098604.1 Genbank gene 5060510 5061700 . - . ID=gene-NDY25_21545;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=NDY25_21545 CP098604.1 Protein Homology CDS 5060510 5061700 . - 0 ID=cds-UUF02404.1;Parent=gene-NDY25_21545;Dbxref=NCBI_GP:UUF02404.1;Name=UUF02404.1;gbkey=CDS;gene=flgJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482966.1;locus_tag=NDY25_21545;product=flagellar assembly peptidoglycan hydrolase FlgJ;protein_id=UUF02404.1;transl_table=11 CP098604.1 Genbank gene 5061702 5062820 . - . ID=gene-NDY25_21550;Name=NDY25_21550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21550 CP098604.1 Protein Homology CDS 5061702 5062820 . - 0 ID=cds-UUF02405.1;Parent=gene-NDY25_21550;Dbxref=NCBI_GP:UUF02405.1;Name=UUF02405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482965.1;locus_tag=NDY25_21550;product=flagellar basal body P-ring protein FlgI;protein_id=UUF02405.1;transl_table=11 CP098604.1 Genbank gene 5062831 5063523 . - . ID=gene-NDY25_21555;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=NDY25_21555 CP098604.1 Protein Homology CDS 5062831 5063523 . - 0 ID=cds-UUF02406.1;Parent=gene-NDY25_21555;Dbxref=NCBI_GP:UUF02406.1;Name=UUF02406.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901722.1;locus_tag=NDY25_21555;product=flagellar basal body L-ring protein FlgH;protein_id=UUF02406.1;transl_table=11 CP098604.1 Genbank gene 5063562 5064347 . - . ID=gene-NDY25_21560;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=NDY25_21560 CP098604.1 Protein Homology CDS 5063562 5064347 . - 0 ID=cds-UUF02407.1;Parent=gene-NDY25_21560;Dbxref=NCBI_GP:UUF02407.1;Name=UUF02407.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901723.1;locus_tag=NDY25_21560;product=flagellar basal-body rod protein FlgG;protein_id=UUF02407.1;transl_table=11 CP098604.1 Genbank gene 5065178 5065933 . - . ID=gene-NDY25_21565;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=NDY25_21565 CP098604.1 Protein Homology CDS 5065178 5065933 . - 0 ID=cds-UUF02408.1;Parent=gene-NDY25_21565;Dbxref=NCBI_GP:UUF02408.1;Name=UUF02408.1;Ontology_term=GO:0001539,GO:0005198;gbkey=CDS;gene=flgF;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154648.1;locus_tag=NDY25_21565;product=flagellar basal-body rod protein FlgF;protein_id=UUF02408.1;transl_table=11 CP098604.1 Genbank gene 5066078 5067301 . - . ID=gene-NDY25_21570;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=NDY25_21570 CP098604.1 Protein Homology CDS 5066078 5067301 . - 0 ID=cds-UUF02409.1;Parent=gene-NDY25_21570;Dbxref=NCBI_GP:UUF02409.1;Name=UUF02409.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159265.1;locus_tag=NDY25_21570;product=flagellar hook protein FlgE;protein_id=UUF02409.1;transl_table=11 CP098604.1 Genbank gene 5067333 5068004 . - . ID=gene-NDY25_21575;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=NDY25_21575 CP098604.1 Protein Homology CDS 5067333 5068004 . - 0 ID=cds-UUF02410.1;Parent=gene-NDY25_21575;Dbxref=NCBI_GP:UUF02410.1;Name=UUF02410.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod;gbkey=CDS;gene=flgD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017117421.1;locus_tag=NDY25_21575;product=flagellar hook assembly protein FlgD;protein_id=UUF02410.1;transl_table=11 CP098604.1 Genbank gene 5068043 5068450 . - . ID=gene-NDY25_21580;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=NDY25_21580 CP098604.1 Protein Homology CDS 5068043 5068450 . - 0 ID=cds-UUF02411.1;Parent=gene-NDY25_21580;Dbxref=NCBI_GP:UUF02411.1;Name=UUF02411.1;gbkey=CDS;gene=flgC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004425624.1;locus_tag=NDY25_21580;product=flagellar basal body rod protein FlgC;protein_id=UUF02411.1;transl_table=11 CP098604.1 Genbank gene 5068454 5068855 . - . ID=gene-NDY25_21585;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=NDY25_21585 CP098604.1 Protein Homology CDS 5068454 5068855 . - 0 ID=cds-UUF02412.1;Parent=gene-NDY25_21585;Dbxref=NCBI_GP:UUF02412.1;Name=UUF02412.1;Ontology_term=GO:0001539,GO:0005198,GO:0009429;gbkey=CDS;gene=flgB;go_component=bacterial-type flagellum basal body%2C proximal rod|0009429||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482950.1;locus_tag=NDY25_21585;product=flagellar basal body rod protein FlgB;protein_id=UUF02412.1;transl_table=11 CP098604.1 Genbank gene 5069191 5070135 . - . ID=gene-NDY25_21590;Name=NDY25_21590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21590 CP098604.1 Protein Homology CDS 5069191 5070135 . - 0 ID=cds-UUF02413.1;Parent=gene-NDY25_21590;Dbxref=NCBI_GP:UUF02413.1;Name=UUF02413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002813451.1;locus_tag=NDY25_21590;product=chemotaxis protein;protein_id=UUF02413.1;transl_table=11 CP098604.1 Genbank gene 5070436 5071080 . + . ID=gene-NDY25_21595;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=NDY25_21595 CP098604.1 Protein Homology CDS 5070436 5071080 . + 0 ID=cds-UUF02414.1;Parent=gene-NDY25_21595;Dbxref=NCBI_GP:UUF02414.1;Name=UUF02414.1;gbkey=CDS;gene=flgA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373601.1;locus_tag=NDY25_21595;product=flagellar basal body P-ring formation protein FlgA;protein_id=UUF02414.1;transl_table=11 CP098604.1 Genbank gene 5071144 5071455 . + . ID=gene-NDY25_21600;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=NDY25_21600 CP098604.1 Protein Homology CDS 5071144 5071455 . + 0 ID=cds-UUF02415.1;Parent=gene-NDY25_21600;Dbxref=NCBI_GP:UUF02415.1;Name=UUF02415.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of transcription%2C DNA-templated|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503328.1;locus_tag=NDY25_21600;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=UUF02415.1;transl_table=11 CP098604.1 Genbank gene 5071471 5071803 . + . ID=gene-NDY25_21605;Name=NDY25_21605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21605 CP098604.1 Protein Homology CDS 5071471 5071803 . + 0 ID=cds-UUF02416.1;Parent=gene-NDY25_21605;Dbxref=NCBI_GP:UUF02416.1;Name=UUF02416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450202.1;locus_tag=NDY25_21605;product=flagellar protein FlgN;protein_id=UUF02416.1;transl_table=11 CP098604.1 Genbank gene 5071957 5073183 . + . ID=gene-NDY25_21610;Name=NDY25_21610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21610 CP098604.1 Protein Homology CDS 5071957 5073183 . + 0 ID=cds-UUF02417.1;Parent=gene-NDY25_21610;Dbxref=NCBI_GP:UUF02417.1;Name=UUF02417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019304404.1;locus_tag=NDY25_21610;product=ATP-binding protein;protein_id=UUF02417.1;transl_table=11 CP098604.1 Genbank gene 5073322 5075043 . - . ID=gene-NDY25_21615;Name=NDY25_21615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21615 CP098604.1 Protein Homology CDS 5073322 5075043 . - 0 ID=cds-UUF02418.1;Parent=gene-NDY25_21615;Dbxref=NCBI_GP:UUF02418.1;Name=UUF02418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154643.1;locus_tag=NDY25_21615;product=EAL domain-containing protein;protein_id=UUF02418.1;transl_table=11 CP098604.1 Genbank gene 5075047 5077179 . - . ID=gene-NDY25_21620;Name=NDY25_21620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21620 CP098604.1 Protein Homology CDS 5075047 5077179 . - 0 ID=cds-UUF02419.1;Parent=gene-NDY25_21620;Dbxref=NCBI_GP:UUF02419.1;Name=UUF02419.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016848734.1;locus_tag=NDY25_21620;product=PAS domain S-box protein;protein_id=UUF02419.1;transl_table=11 CP098604.1 Genbank gene 5077299 5080085 . + . ID=gene-NDY25_21625;Name=NDY25_21625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21625 CP098604.1 Protein Homology CDS 5077299 5080085 . + 0 ID=cds-UUF02420.1;Parent=gene-NDY25_21625;Dbxref=NCBI_GP:UUF02420.1;Name=UUF02420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347293.1;locus_tag=NDY25_21625;product=EAL domain-containing protein;protein_id=UUF02420.1;transl_table=11 CP098604.1 Genbank gene 5080174 5080250 . + . ID=gene-NDY25_21630;Name=NDY25_21630;gbkey=Gene;gene_biotype=ncRNA;locus_tag=NDY25_21630 CP098604.1 cmsearch ncRNA 5080174 5080250 . + . ID=rna-NDY25_21630;Parent=gene-NDY25_21630;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_21630;product=sX9 sRNA CP098604.1 cmsearch exon 5080174 5080250 . + . ID=exon-NDY25_21630-1;Parent=rna-NDY25_21630;Dbxref=RFAM:RF02228;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.1;locus_tag=NDY25_21630;product=sX9 sRNA CP098604.1 Genbank gene 5081210 5081494 . - . ID=gene-NDY25_21635;Name=NDY25_21635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21635 CP098604.1 Protein Homology CDS 5081210 5081494 . - 0 ID=cds-UUF02421.1;Parent=gene-NDY25_21635;Dbxref=NCBI_GP:UUF02421.1;Name=UUF02421.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575786.1;locus_tag=NDY25_21635;product=hypothetical protein;protein_id=UUF02421.1;transl_table=11 CP098604.1 Genbank gene 5081579 5082856 . - . ID=gene-NDY25_21640;Name=NDY25_21640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21640 CP098604.1 Protein Homology CDS 5081579 5082856 . - 0 ID=cds-UUF04748.1;Parent=gene-NDY25_21640;Dbxref=NCBI_GP:UUF04748.1;Name=UUF04748.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159263.1;locus_tag=NDY25_21640;product=methyl-accepting chemotaxis protein;protein_id=UUF04748.1;transl_table=11 CP098604.1 Genbank gene 5082918 5083532 . - . ID=gene-NDY25_21645;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=NDY25_21645 CP098604.1 Protein Homology CDS 5082918 5083532 . - 0 ID=cds-UUF02422.1;Parent=gene-NDY25_21645;Dbxref=NCBI_GP:UUF02422.1;Name=UUF02422.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_029217215.1;locus_tag=NDY25_21645;product=high frequency lysogenization protein HflD;protein_id=UUF02422.1;transl_table=11 CP098604.1 Genbank gene 5083532 5084668 . - . ID=gene-NDY25_21650;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=NDY25_21650 CP098604.1 Protein Homology CDS 5083532 5084668 . - 0 ID=cds-UUF02423.1;Parent=gene-NDY25_21650;Dbxref=NCBI_GP:UUF02423.1;Name=UUF02423.1;Ontology_term=GO:0008033,GO:0016740,GO:0016783;gbkey=CDS;gene=mnmA;go_function=transferase activity|0016740||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575784.1;locus_tag=NDY25_21650;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=UUF02423.1;transl_table=11 CP098604.1 Genbank gene 5084665 5085123 . - . ID=gene-NDY25_21655;Name=NDY25_21655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21655 CP098604.1 Protein Homology CDS 5084665 5085123 . - 0 ID=cds-UUF02424.1;Parent=gene-NDY25_21655;Dbxref=NCBI_GP:UUF02424.1;Name=UUF02424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011259188.1;locus_tag=NDY25_21655;product=NUDIX hydrolase;protein_id=UUF02424.1;transl_table=11 CP098604.1 Genbank gene 5085386 5085706 . + . ID=gene-NDY25_21660;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=NDY25_21660 CP098604.1 Protein Homology CDS 5085386 5085706 . + 0 ID=cds-UUF02425.1;Parent=gene-NDY25_21660;Dbxref=NCBI_GP:UUF02425.1;Name=UUF02425.1;gbkey=CDS;gene=clpS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448844.1;locus_tag=NDY25_21660;product=ATP-dependent Clp protease adapter ClpS;protein_id=UUF02425.1;transl_table=11 CP098604.1 Genbank gene 5085849 5088131 . + . ID=gene-NDY25_21665;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=NDY25_21665 CP098604.1 Protein Homology CDS 5085849 5088131 . + 0 ID=cds-UUF02426.1;Parent=gene-NDY25_21665;Dbxref=NCBI_GP:UUF02426.1;Name=UUF02426.1;Ontology_term=GO:0006508,GO:0043335,GO:0004176,GO:0009368;gbkey=CDS;gene=clpA;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA;go_process=proteolysis|0006508||IEA,protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016901749.1;locus_tag=NDY25_21665;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=UUF02426.1;transl_table=11 CP098604.1 Genbank gene 5088274 5088492 . - . ID=gene-NDY25_21670;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=NDY25_21670 CP098604.1 Protein Homology CDS 5088274 5088492 . - 0 ID=cds-UUF02427.1;Parent=gene-NDY25_21670;Dbxref=NCBI_GP:UUF02427.1;Name=UUF02427.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002553999.1;locus_tag=NDY25_21670;product=translation initiation factor IF-1;protein_id=UUF02427.1;transl_table=11 CP098604.1 Genbank gene 5088573 5089301 . - . ID=gene-NDY25_21675;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=NDY25_21675 CP098604.1 Protein Homology CDS 5088573 5089301 . - 0 ID=cds-UUF04749.1;Parent=gene-NDY25_21675;Dbxref=NCBI_GP:UUF04749.1;Name=UUF04749.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyltransferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373570.1;locus_tag=NDY25_21675;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=UUF04749.1;transl_table=11 CP098604.1 Genbank gene 5089402 5090520 . - . ID=gene-NDY25_21680;Name=NDY25_21680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21680 CP098604.1 Protein Homology CDS 5089402 5090520 . - 0 ID=cds-UUF02428.1;Parent=gene-NDY25_21680;Dbxref=NCBI_GP:UUF02428.1;Name=UUF02428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017116067.1;locus_tag=NDY25_21680;product=GNAT family N-acetyltransferase;protein_id=UUF02428.1;transl_table=11 CP098604.1 Genbank gene 5090578 5091546 . - . ID=gene-NDY25_21685;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=NDY25_21685 CP098604.1 Protein Homology CDS 5090578 5091546 . - 0 ID=cds-UUF02429.1;Parent=gene-NDY25_21685;Dbxref=NCBI_GP:UUF02429.1;Name=UUF02429.1;Ontology_term=GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase activity|0004791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007964266.1;locus_tag=NDY25_21685;product=thioredoxin-disulfide reductase;protein_id=UUF02429.1;transl_table=11 CP098604.1 Genbank gene 5091829 5094186 . + . ID=gene-NDY25_21690;Name=NDY25_21690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21690 CP098604.1 Protein Homology CDS 5091829 5094186 . + 0 ID=cds-UUF02430.1;Parent=gene-NDY25_21690;Dbxref=NCBI_GP:UUF02430.1;Name=UUF02430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172352.1;locus_tag=NDY25_21690;product=DNA translocase FtsK 4TM domain-containing protein;protein_id=UUF02430.1;transl_table=11 CP098604.1 Genbank gene 5094476 5096401 . + . ID=gene-NDY25_21695;Name=NDY25_21695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21695 CP098604.1 Protein Homology CDS 5094476 5096401 . + 0 ID=cds-UUF02431.1;Parent=gene-NDY25_21695;Dbxref=NCBI_GP:UUF02431.1;Name=UUF02431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914468.1;locus_tag=NDY25_21695;product=DUF3857 and transglutaminase domain-containing protein;protein_id=UUF02431.1;transl_table=11 CP098604.1 Genbank gene 5096466 5097137 . + . ID=gene-NDY25_21700;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=NDY25_21700 CP098604.1 Protein Homology CDS 5096466 5097137 . + 0 ID=cds-UUF02432.1;Parent=gene-NDY25_21700;Dbxref=NCBI_GP:UUF02432.1;Name=UUF02432.1;Ontology_term=GO:0009306,GO:0008320;gbkey=CDS;gene=lolA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158314.1;locus_tag=NDY25_21700;product=outer membrane lipoprotein chaperone LolA;protein_id=UUF02432.1;transl_table=11 CP098604.1 Genbank gene 5097297 5098586 . + . ID=gene-NDY25_21705;Name=NDY25_21705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21705 CP098604.1 Protein Homology CDS 5097297 5098586 . + 0 ID=cds-UUF04750.1;Parent=gene-NDY25_21705;Dbxref=NCBI_GP:UUF04750.1;Name=UUF04750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448737.1;locus_tag=NDY25_21705;product=replication-associated recombination protein A;protein_id=UUF04750.1;transl_table=11 CP098604.1 Genbank gene 5098903 5099304 . + . ID=gene-NDY25_21710;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=NDY25_21710 CP098604.1 Protein Homology CDS 5098903 5099304 . + 0 ID=cds-UUF02433.1;Parent=gene-NDY25_21710;Dbxref=NCBI_GP:UUF02433.1;Name=UUF02433.1;gbkey=CDS;gene=crcB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448736.1;locus_tag=NDY25_21710;product=fluoride efflux transporter CrcB;protein_id=UUF02433.1;transl_table=11 CP098604.1 Genbank gene 5099403 5100608 . - . ID=gene-NDY25_21715;Name=NDY25_21715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21715 CP098604.1 Protein Homology CDS 5099403 5100608 . - 0 ID=cds-UUF02434.1;Parent=gene-NDY25_21715;Dbxref=NCBI_GP:UUF02434.1;Name=UUF02434.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812978.1;locus_tag=NDY25_21715;product=acetyl-CoA C-acyltransferase;protein_id=UUF02434.1;transl_table=11 CP098604.1 Genbank gene 5100764 5103136 . - . ID=gene-NDY25_21720;Name=NDY25_21720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21720 CP098604.1 Protein Homology CDS 5100764 5103136 . - 0 ID=cds-UUF02435.1;Parent=gene-NDY25_21720;Dbxref=NCBI_GP:UUF02435.1;Name=UUF02435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158309.1;locus_tag=NDY25_21720;product=3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein;protein_id=UUF02435.1;transl_table=11 CP098604.1 Genbank gene 5103162 5103794 . - . ID=gene-NDY25_21725;Name=NDY25_21725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21725 CP098604.1 Protein Homology CDS 5103162 5103794 . - 0 ID=cds-UUF02436.1;Parent=gene-NDY25_21725;Dbxref=NCBI_GP:UUF02436.1;Name=UUF02436.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015463154.1;locus_tag=NDY25_21725;product=TetR family transcriptional regulator;protein_id=UUF02436.1;transl_table=11 CP098604.1 Genbank gene 5104014 5104439 . + . ID=gene-NDY25_21730;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=NDY25_21730 CP098604.1 Protein Homology CDS 5104014 5104439 . + 0 ID=cds-UUF02437.1;Parent=gene-NDY25_21730;Dbxref=NCBI_GP:UUF02437.1;Name=UUF02437.1;Ontology_term=GO:0006165,GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;go_process=nucleoside diphosphate phosphorylation|0006165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005409295.1;locus_tag=NDY25_21730;product=nucleoside-diphosphate kinase;protein_id=UUF02437.1;transl_table=11 CP098604.1 Genbank gene 5104470 5105663 . + . ID=gene-NDY25_21735;Name=rlmN;gbkey=Gene;gene=rlmN;gene_biotype=protein_coding;locus_tag=NDY25_21735 CP098604.1 Protein Homology CDS 5104470 5105663 . + 0 ID=cds-UUF04751.1;Parent=gene-NDY25_21735;Dbxref=NCBI_GP:UUF04751.1;Name=UUF04751.1;Ontology_term=GO:0031167,GO:0008757,GO:0016433;gbkey=CDS;gene=rlmN;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,rRNA (adenine) methyltransferase activity|0016433||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005914477.1;locus_tag=NDY25_21735;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=UUF04751.1;transl_table=11 CP098604.1 Genbank gene 5105674 5106462 . + . ID=gene-NDY25_21740;Name=pilW;gbkey=Gene;gene=pilW;gene_biotype=protein_coding;locus_tag=NDY25_21740 CP098604.1 Protein Homology CDS 5105674 5106462 . + 0 ID=cds-UUF04752.1;Parent=gene-NDY25_21740;Dbxref=NCBI_GP:UUF04752.1;Name=UUF04752.1;Ontology_term=GO:0005515;gbkey=CDS;gene=pilW;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158306.1;locus_tag=NDY25_21740;product=type IV pilus biogenesis/stability protein PilW;protein_id=UUF04752.1;transl_table=11 CP098604.1 Genbank gene 5106459 5107319 . + . ID=gene-NDY25_21745;Name=NDY25_21745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21745 CP098604.1 Protein Homology CDS 5106459 5107319 . + 0 ID=cds-UUF02438.1;Parent=gene-NDY25_21745;Dbxref=NCBI_GP:UUF02438.1;Name=UUF02438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012445040.1;locus_tag=NDY25_21745;product=DUF4115 domain-containing protein;protein_id=UUF02438.1;transl_table=11 CP098604.1 Genbank gene 5107390 5108028 . + . ID=gene-NDY25_21750;Name=NDY25_21750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21750 CP098604.1 Protein Homology CDS 5107390 5108028 . + 0 ID=cds-UUF02439.1;Parent=gene-NDY25_21750;Dbxref=NCBI_GP:UUF02439.1;Name=UUF02439.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014503367.1;locus_tag=NDY25_21750;product=tetratricopeptide repeat protein;protein_id=UUF02439.1;transl_table=11 CP098604.1 Genbank gene 5108028 5109245 . + . ID=gene-NDY25_21755;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=NDY25_21755 CP098604.1 Protein Homology CDS 5108028 5109245 . + 0 ID=cds-UUF02440.1;Parent=gene-NDY25_21755;Dbxref=NCBI_GP:UUF02440.1;Name=UUF02440.1;Ontology_term=GO:0005515,GO:0009279;gbkey=CDS;gene=bamB;go_component=cell outer membrane|0009279||IEA;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007963809.1;locus_tag=NDY25_21755;product=outer membrane protein assembly factor BamB;protein_id=UUF02440.1;transl_table=11 CP098604.1 Genbank gene 5109256 5110653 . + . ID=gene-NDY25_21760;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=NDY25_21760 CP098604.1 Protein Homology CDS 5109256 5110653 . + 0 ID=cds-UUF02441.1;Parent=gene-NDY25_21760;Dbxref=NCBI_GP:UUF02441.1;Name=UUF02441.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904421.1;locus_tag=NDY25_21760;product=ribosome biogenesis GTPase Der;protein_id=UUF02441.1;transl_table=11 CP098604.1 Genbank gene 5110859 5112079 . + . ID=gene-NDY25_21765;Name=NDY25_21765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21765 CP098604.1 Protein Homology CDS 5110859 5112079 . + 0 ID=cds-UUF02442.1;Parent=gene-NDY25_21765;Dbxref=NCBI_GP:UUF02442.1;Name=UUF02442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160125.1;locus_tag=NDY25_21765;product=molybdopterin molybdotransferase MoeA;protein_id=UUF02442.1;transl_table=11 CP098604.1 Genbank gene 5112238 5113380 . - . ID=gene-NDY25_21770;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=NDY25_21770 CP098604.1 Protein Homology CDS 5112238 5113380 . - 0 ID=cds-UUF02443.1;Parent=gene-NDY25_21770;Dbxref=NCBI_GP:UUF02443.1;Name=UUF02443.1;gbkey=CDS;gene=moeB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003482871.1;locus_tag=NDY25_21770;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=UUF02443.1;transl_table=11 CP098604.1 Genbank gene 5113484 5113699 . + . ID=gene-NDY25_21775;Name=NDY25_21775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21775 CP098604.1 Protein Homology CDS 5113484 5113699 . + 0 ID=cds-UUF04753.1;Parent=gene-NDY25_21775;Dbxref=NCBI_GP:UUF04753.1;Name=UUF04753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158298.1;locus_tag=NDY25_21775;product=hypothetical protein;protein_id=UUF04753.1;transl_table=11 CP098604.1 Genbank gene 5113894 5114874 . + . ID=gene-NDY25_21780;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=NDY25_21780 CP098604.1 Protein Homology CDS 5113894 5114874 . + 0 ID=cds-UUF02444.1;Parent=gene-NDY25_21780;Dbxref=NCBI_GP:UUF02444.1;Name=UUF02444.1;Ontology_term=GO:0006281,GO:0008853;gbkey=CDS;gene=xth;go_function=exodeoxyribonuclease III activity|0008853||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007970070.1;locus_tag=NDY25_21780;product=exodeoxyribonuclease III;protein_id=UUF02444.1;transl_table=11 CP098604.1 Genbank gene 5114867 5115142 . - . ID=gene-NDY25_21785;Name=NDY25_21785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21785 CP098604.1 Protein Homology CDS 5114867 5115142 . - 0 ID=cds-UUF02445.1;Parent=gene-NDY25_21785;Dbxref=NCBI_GP:UUF02445.1;Name=UUF02445.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158292.1;locus_tag=NDY25_21785;product=hypothetical protein;protein_id=UUF02445.1;transl_table=11 CP098604.1 Genbank gene 5115347 5116600 . + . ID=gene-NDY25_21790;Name=NDY25_21790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21790 CP098604.1 Protein Homology CDS 5115347 5116600 . + 0 ID=cds-UUF02446.1;Parent=gene-NDY25_21790;Dbxref=NCBI_GP:UUF02446.1;Name=UUF02446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448718.1;locus_tag=NDY25_21790;product=molybdopterin molybdotransferase MoeA;protein_id=UUF02446.1;transl_table=11 CP098604.1 Genbank gene 5116647 5117216 . + . ID=gene-NDY25_21795;Name=NDY25_21795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21795 CP098604.1 Protein Homology CDS 5116647 5117216 . + 0 ID=cds-UUF02447.1;Parent=gene-NDY25_21795;Dbxref=NCBI_GP:UUF02447.1;Name=UUF02447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575382.1;locus_tag=NDY25_21795;product=molybdenum cofactor guanylyltransferase;protein_id=UUF02447.1;transl_table=11 CP098604.1 Genbank gene 5117170 5117562 . + . ID=gene-NDY25_21800;Name=NDY25_21800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21800 CP098604.1 Protein Homology CDS 5117170 5117562 . + 0 ID=cds-UUF04754.1;Parent=gene-NDY25_21800;Dbxref=NCBI_GP:UUF04754.1;Name=UUF04754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448716.1;locus_tag=NDY25_21800;product=hypothetical protein;protein_id=UUF04754.1;transl_table=11 CP098604.1 Genbank gene 5117591 5118589 . - . ID=gene-NDY25_21805;Name=NDY25_21805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21805 CP098604.1 Protein Homology CDS 5117591 5118589 . - 0 ID=cds-UUF02448.1;Parent=gene-NDY25_21805;Dbxref=NCBI_GP:UUF02448.1;Name=UUF02448.1;Ontology_term=GO:0008168;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448715.1;locus_tag=NDY25_21805;product=SAM-dependent methyltransferase;protein_id=UUF02448.1;transl_table=11 CP098604.1 Genbank gene 5118672 5119244 . + . ID=gene-NDY25_21810;Name=NDY25_21810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21810 CP098604.1 Protein Homology CDS 5118672 5119244 . + 0 ID=cds-UUF02449.1;Parent=gene-NDY25_21810;Dbxref=NCBI_GP:UUF02449.1;Name=UUF02449.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575394.1;locus_tag=NDY25_21810;product=ANTAR domain-containing protein;protein_id=UUF02449.1;transl_table=11 CP098604.1 Genbank gene 5119249 5120313 . + . ID=gene-NDY25_21815;Name=NDY25_21815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21815 CP098604.1 Protein Homology CDS 5119249 5120313 . + 0 ID=cds-UUF02450.1;Parent=gene-NDY25_21815;Dbxref=NCBI_GP:UUF02450.1;Name=UUF02450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448713.1;locus_tag=NDY25_21815;product=ABC transporter substrate-binding protein;protein_id=UUF02450.1;transl_table=11 CP098604.1 Genbank gene 5121244 5122413 . + . ID=gene-NDY25_21820;Name=NDY25_21820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21820 CP098604.1 Protein Homology CDS 5121244 5122413 . + 0 ID=cds-UUF04755.1;Parent=gene-NDY25_21820;Dbxref=NCBI_GP:UUF04755.1;Name=UUF04755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158282.1;locus_tag=NDY25_21820;product=NarK/NasA family nitrate transporter;protein_id=UUF04755.1;transl_table=11 CP098604.1 Genbank gene 5122473 5124890 . + . ID=gene-NDY25_21825;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=NDY25_21825 CP098604.1 Protein Homology CDS 5122473 5124890 . + 0 ID=cds-UUF04756.1;Parent=gene-NDY25_21825;Dbxref=NCBI_GP:UUF04756.1;Name=UUF04756.1;Ontology_term=GO:0042128,GO:0008942,GO:0016491,GO:0050660,GO:0050661;gbkey=CDS;gene=nirB;go_function=nitrite reductase [NAD(P)H] activity|0008942||IEA,oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=nitrate assimilation|0042128||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158281.1;locus_tag=NDY25_21825;product=nitrite reductase large subunit NirB;protein_id=UUF04756.1;transl_table=11 CP098604.1 Genbank gene 5124887 5125252 . + . ID=gene-NDY25_21830;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=NDY25_21830 CP098604.1 Protein Homology CDS 5124887 5125252 . + 0 ID=cds-UUF02451.1;Parent=gene-NDY25_21830;Dbxref=NCBI_GP:UUF02451.1;Name=UUF02451.1;Ontology_term=GO:0008942,GO:0051537;gbkey=CDS;gene=nirD;go_function=nitrite reductase [NAD(P)H] activity|0008942||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019237667.1;locus_tag=NDY25_21830;product=nitrite reductase small subunit NirD;protein_id=UUF02451.1;transl_table=11 CP098604.1 Genbank gene 5125249 5128047 . + . ID=gene-NDY25_21835;Name=NDY25_21835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21835 CP098604.1 Protein Homology CDS 5125249 5128047 . + 0 ID=cds-UUF02452.1;Parent=gene-NDY25_21835;Dbxref=NCBI_GP:UUF02452.1;Name=UUF02452.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014090169.1;locus_tag=NDY25_21835;product=molybdopterin-dependent oxidoreductase;protein_id=UUF02452.1;transl_table=11 CP098604.1 Genbank gene 5128117 5128863 . + . ID=gene-NDY25_21840;Name=cobA;gbkey=Gene;gene=cobA;gene_biotype=protein_coding;locus_tag=NDY25_21840 CP098604.1 Protein Homology CDS 5128117 5128863 . + 0 ID=cds-UUF04757.1;Parent=gene-NDY25_21840;Dbxref=NCBI_GP:UUF04757.1;Name=UUF04757.1;Ontology_term=GO:0019354,GO:0004851;gbkey=CDS;gene=cobA;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017159251.1;locus_tag=NDY25_21840;product=uroporphyrinogen-III C-methyltransferase;protein_id=UUF04757.1;transl_table=11 CP098604.1 Genbank gene 5128925 5129968 . - . ID=gene-NDY25_21845;Name=NDY25_21845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21845 CP098604.1 Protein Homology CDS 5128925 5129968 . - 0 ID=cds-UUF02453.1;Parent=gene-NDY25_21845;Dbxref=NCBI_GP:UUF02453.1;Name=UUF02453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451328.1;locus_tag=NDY25_21845;product=acyltransferase;protein_id=UUF02453.1;transl_table=11 CP098604.1 Genbank gene 5130013 5131314 . - . ID=gene-NDY25_21850;Name=NDY25_21850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21850 CP098604.1 Protein Homology CDS 5130013 5131314 . - 0 ID=cds-UUF02454.1;Parent=gene-NDY25_21850;Dbxref=NCBI_GP:UUF02454.1;Name=UUF02454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507756.1;locus_tag=NDY25_21850;product=NAD(P)-dependent oxidoreductase;protein_id=UUF02454.1;transl_table=11 CP098604.1 Genbank gene 5131311 5131892 . - . ID=gene-NDY25_21855;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=NDY25_21855 CP098604.1 Protein Homology CDS 5131311 5131892 . - 0 ID=cds-UUF02455.1;Parent=gene-NDY25_21855;Dbxref=NCBI_GP:UUF02455.1;Name=UUF02455.1;Ontology_term=GO:0009243,GO:0019305,GO:0008830;gbkey=CDS;gene=rfbC;go_function=dTDP-4-dehydrorhamnose 3%2C5-epimerase activity|0008830||IEA;go_process=O antigen biosynthetic process|0009243||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438396.1;locus_tag=NDY25_21855;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=UUF02455.1;transl_table=11 CP098604.1 Genbank gene 5131889 5132938 . - . ID=gene-NDY25_21860;Name=NDY25_21860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21860 CP098604.1 Protein Homology CDS 5131889 5132938 . - 0 ID=cds-UUF02456.1;Parent=gene-NDY25_21860;Dbxref=NCBI_GP:UUF02456.1;Name=UUF02456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011037177.1;locus_tag=NDY25_21860;product=SDR family oxidoreductase;protein_id=UUF02456.1;transl_table=11 CP098604.1 Genbank gene 5132943 5133716 . - . ID=gene-NDY25_21865;Name=rfbF;gbkey=Gene;gene=rfbF;gene_biotype=protein_coding;locus_tag=NDY25_21865 CP098604.1 Protein Homology CDS 5132943 5133716 . - 0 ID=cds-UUF02457.1;Parent=gene-NDY25_21865;Dbxref=NCBI_GP:UUF02457.1;Name=UUF02457.1;Ontology_term=GO:0009103,GO:0047343;gbkey=CDS;gene=rfbF;go_function=glucose-1-phosphate cytidylyltransferase activity|0047343||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000648783.1;locus_tag=NDY25_21865;product=glucose-1-phosphate cytidylyltransferase;protein_id=UUF02457.1;transl_table=11 CP098604.1 Genbank gene 5133773 5134957 . - . ID=gene-NDY25_21870;Name=NDY25_21870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21870 CP098604.1 Protein Homology CDS 5133773 5134957 . - 0 ID=cds-UUF02458.1;Parent=gene-NDY25_21870;Dbxref=NCBI_GP:UUF02458.1;Name=UUF02458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438398.1;locus_tag=NDY25_21870;product=glycosyltransferase;protein_id=UUF02458.1;transl_table=11 CP098604.1 Genbank gene 5135199 5135846 . + . ID=gene-NDY25_21875;Name=NDY25_21875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21875 CP098604.1 Protein Homology CDS 5135199 5135846 . + 0 ID=cds-UUF02459.1;Parent=gene-NDY25_21875;Dbxref=NCBI_GP:UUF02459.1;Name=UUF02459.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:NF013434.2;locus_tag=NDY25_21875;product=FAD-dependent oxidoreductase;protein_id=UUF02459.1;transl_table=11 CP098604.1 Genbank gene 5135950 5136929 . - . ID=gene-NDY25_21880;Name=NDY25_21880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21880 CP098604.1 Protein Homology CDS 5136218 5136929 . - 0 ID=cds-UUF02460.1;Parent=gene-NDY25_21880;Dbxref=NCBI_GP:UUF02460.1;Name=UUF02460.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_21880;product=IS5 family transposase;protein_id=UUF02460.1;transl_table=11 CP098604.1 Protein Homology CDS 5135950 5136218 . - 2 ID=cds-UUF02460.1;Parent=gene-NDY25_21880;Dbxref=NCBI_GP:UUF02460.1;Name=UUF02460.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007975311.1;locus_tag=NDY25_21880;product=IS5 family transposase;protein_id=UUF02460.1;transl_table=11 CP098604.1 Genbank gene 5136957 5137535 . + . ID=gene-NDY25_21885;Name=NDY25_21885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21885 CP098604.1 Protein Homology CDS 5136957 5137535 . + 0 ID=cds-UUF02461.1;Parent=gene-NDY25_21885;Dbxref=NCBI_GP:UUF02461.1;Name=UUF02461.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: protein motif:HMM:NF013434.2;locus_tag=NDY25_21885;product=FAD-dependent oxidoreductase;protein_id=UUF02461.1;transl_table=11 CP098604.1 Genbank gene 5137685 5137942 . + . ID=gene-NDY25_21890;Name=NDY25_21890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21890 CP098604.1 Protein Homology CDS 5137685 5137942 . + 0 ID=cds-UUF02462.1;Parent=gene-NDY25_21890;Dbxref=NCBI_GP:UUF02462.1;Name=UUF02462.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002812907.1;locus_tag=NDY25_21890;product=stress-induced protein;protein_id=UUF02462.1;transl_table=11 CP098604.1 Genbank gene 5138426 5138935 . + . ID=gene-NDY25_21895;Name=NDY25_21895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21895 CP098604.1 Protein Homology CDS 5138426 5138935 . + 0 ID=cds-UUF02463.1;Parent=gene-NDY25_21895;Dbxref=NCBI_GP:UUF02463.1;Name=UUF02463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373481.1;locus_tag=NDY25_21895;product=DUF892 family protein;protein_id=UUF02463.1;transl_table=11 CP098604.1 Genbank gene 5139110 5140030 . + . ID=gene-NDY25_21900;Name=NDY25_21900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21900 CP098604.1 Protein Homology CDS 5139110 5140030 . + 0 ID=cds-UUF02464.1;Parent=gene-NDY25_21900;Dbxref=NCBI_GP:UUF02464.1;Name=UUF02464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010373479.1;locus_tag=NDY25_21900;product=M14 family metallocarboxypeptidase;protein_id=UUF02464.1;transl_table=11 CP098604.1 Genbank gene 5140078 5140668 . + . ID=gene-NDY25_21905;Name=NDY25_21905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21905 CP098604.1 Protein Homology CDS 5140078 5140668 . + 0 ID=cds-UUF02465.1;Parent=gene-NDY25_21905;Dbxref=NCBI_GP:UUF02465.1;Name=UUF02465.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011051370.1;locus_tag=NDY25_21905;product=DUF1349 domain-containing protein;protein_id=UUF02465.1;transl_table=11 CP098604.1 Genbank gene 5140678 5142489 . - . ID=gene-NDY25_21910;Name=NDY25_21910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21910 CP098604.1 Protein Homology CDS 5140678 5142489 . - 0 ID=cds-UUF02466.1;Parent=gene-NDY25_21910;Dbxref=NCBI_GP:UUF02466.1;Name=UUF02466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017165052.1;locus_tag=NDY25_21910;product=EAL domain-containing protein;protein_id=UUF02466.1;transl_table=11 CP098604.1 Genbank gene 5143243 5154279 . + . ID=gene-NDY25_21915;Name=NDY25_21915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21915 CP098604.1 Protein Homology CDS 5143243 5154279 . + 0 ID=cds-UUF02467.1;Parent=gene-NDY25_21915;Dbxref=NCBI_GP:UUF02467.1;Name=UUF02467.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507767.1;locus_tag=NDY25_21915;product=autotransporter-associated beta strand repeat-containing protein;protein_id=UUF02467.1;transl_table=11 CP098604.1 Genbank pseudogene 5154510 5157363 . - . ID=gene-NDY25_21920;Name=NDY25_21920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21920;pseudo=true CP098604.1 Protein Homology CDS 5154510 5157363 . - 0 ID=cds-NDY25_21920;Parent=gene-NDY25_21920;Note=frameshifted;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160179.1;locus_tag=NDY25_21920;product=S8 family serine peptidase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5158151 5158825 . - . ID=gene-NDY25_21925;Name=NDY25_21925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21925 CP098604.1 GeneMarkS-2+ CDS 5158151 5158825 . - 0 ID=cds-UUF02468.1;Parent=gene-NDY25_21925;Dbxref=NCBI_GP:UUF02468.1;Name=UUF02468.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_21925;product=hypothetical protein;protein_id=UUF02468.1;transl_table=11 CP098604.1 Genbank gene 5159187 5159993 . - . ID=gene-NDY25_21930;Name=NDY25_21930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21930 CP098604.1 Protein Homology CDS 5159187 5159993 . - 0 ID=cds-UUF04758.1;Parent=gene-NDY25_21930;Dbxref=NCBI_GP:UUF04758.1;Name=UUF04758.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012722.2;locus_tag=NDY25_21930;product=HAMP domain-containing histidine kinase;protein_id=UUF04758.1;transl_table=11 CP098604.1 Genbank pseudogene 5160636 5161331 . - . ID=gene-NDY25_21935;Name=NDY25_21935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_21935;pseudo=true CP098604.1 Protein Homology CDS 5160636 5161331 . - 0 ID=cds-NDY25_21935;Parent=gene-NDY25_21935;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016944104.1;locus_tag=NDY25_21935;product=response regulator transcription factor;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5161441 5162412 . - . ID=gene-NDY25_21940;Name=NDY25_21940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21940 CP098604.1 Protein Homology CDS 5161441 5162412 . - 0 ID=cds-UUF02469.1;Parent=gene-NDY25_21940;Dbxref=NCBI_GP:UUF02469.1;Name=UUF02469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437817.1;locus_tag=NDY25_21940;product=aspartyl/asparaginyl beta-hydroxylase domain-containing protein;protein_id=UUF02469.1;transl_table=11 CP098604.1 Genbank gene 5162477 5163283 . - . ID=gene-NDY25_21945;Name=NDY25_21945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21945 CP098604.1 Protein Homology CDS 5162477 5163283 . - 0 ID=cds-UUF02470.1;Parent=gene-NDY25_21945;Dbxref=NCBI_GP:UUF02470.1;Name=UUF02470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012437816.1;locus_tag=NDY25_21945;product=MipA/OmpV family protein;protein_id=UUF02470.1;transl_table=11 CP098604.1 Genbank gene 5163589 5163750 . + . ID=gene-NDY25_21950;Name=NDY25_21950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21950 CP098604.1 Protein Homology CDS 5163589 5163750 . + 0 ID=cds-UUF02471.1;Parent=gene-NDY25_21950;Dbxref=NCBI_GP:UUF02471.1;Name=UUF02471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448798.1;locus_tag=NDY25_21950;product=hypothetical protein;protein_id=UUF02471.1;transl_table=11 CP098604.1 Genbank gene 5163890 5165407 . + . ID=gene-NDY25_21955;Name=NDY25_21955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21955 CP098604.1 Protein Homology CDS 5163890 5165407 . + 0 ID=cds-UUF02472.1;Parent=gene-NDY25_21955;Dbxref=NCBI_GP:UUF02472.1;Name=UUF02472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448797.1;locus_tag=NDY25_21955;product=FAD-dependent oxidoreductase;protein_id=UUF02472.1;transl_table=11 CP098604.1 Genbank gene 5165476 5166051 . - . ID=gene-NDY25_21960;Name=NDY25_21960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21960 CP098604.1 Protein Homology CDS 5165476 5166051 . - 0 ID=cds-UUF02473.1;Parent=gene-NDY25_21960;Dbxref=NCBI_GP:UUF02473.1;Name=UUF02473.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448796.1;locus_tag=NDY25_21960;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=UUF02473.1;transl_table=11 CP098604.1 Genbank gene 5166106 5166792 . - . ID=gene-NDY25_21965;Name=NDY25_21965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21965 CP098604.1 Protein Homology CDS 5166106 5166792 . - 0 ID=cds-UUF02474.1;Parent=gene-NDY25_21965;Dbxref=NCBI_GP:UUF02474.1;Name=UUF02474.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448795.1;locus_tag=NDY25_21965;product=glycosyltransferase;protein_id=UUF02474.1;transl_table=11 CP098604.1 Genbank gene 5166789 5167385 . - . ID=gene-NDY25_21970;Name=NDY25_21970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21970 CP098604.1 Protein Homology CDS 5166789 5167385 . - 0 ID=cds-UUF02475.1;Parent=gene-NDY25_21970;Dbxref=NCBI_GP:UUF02475.1;Name=UUF02475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158086.1;locus_tag=NDY25_21970;product=class I SAM-dependent methyltransferase;protein_id=UUF02475.1;transl_table=11 CP098604.1 Genbank gene 5167382 5168143 . - . ID=gene-NDY25_21975;Name=NDY25_21975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21975 CP098604.1 Protein Homology CDS 5167382 5168143 . - 0 ID=cds-UUF02476.1;Parent=gene-NDY25_21975;Dbxref=NCBI_GP:UUF02476.1;Name=UUF02476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448793.1;locus_tag=NDY25_21975;product=PIG-L family deacetylase;protein_id=UUF02476.1;transl_table=11 CP098604.1 Genbank gene 5168131 5169126 . - . ID=gene-NDY25_21980;Name=NDY25_21980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21980 CP098604.1 Protein Homology CDS 5168131 5169126 . - 0 ID=cds-UUF02477.1;Parent=gene-NDY25_21980;Dbxref=NCBI_GP:UUF02477.1;Name=UUF02477.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014507429.1;locus_tag=NDY25_21980;product=acyl-CoA dehydrogenase family protein;protein_id=UUF02477.1;transl_table=11 CP098604.1 Genbank gene 5169236 5169604 . - . ID=gene-NDY25_21985;Name=NDY25_21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21985 CP098604.1 Protein Homology CDS 5169236 5169604 . - 0 ID=cds-UUF02478.1;Parent=gene-NDY25_21985;Dbxref=NCBI_GP:UUF02478.1;Name=UUF02478.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448791.1;locus_tag=NDY25_21985;product=response regulator;protein_id=UUF02478.1;transl_table=11 CP098604.1 Genbank gene 5169679 5170947 . + . ID=gene-NDY25_21990;Name=NDY25_21990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21990 CP098604.1 Protein Homology CDS 5169679 5170947 . + 0 ID=cds-UUF02479.1;Parent=gene-NDY25_21990;Dbxref=NCBI_GP:UUF02479.1;Name=UUF02479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448790.1;locus_tag=NDY25_21990;product=PAS domain-containing protein;protein_id=UUF02479.1;transl_table=11 CP098604.1 Genbank gene 5171061 5171348 . - . ID=gene-NDY25_21995;Name=NDY25_21995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_21995 CP098604.1 Protein Homology CDS 5171061 5171348 . - 0 ID=cds-UUF02480.1;Parent=gene-NDY25_21995;Dbxref=NCBI_GP:UUF02480.1;Name=UUF02480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904796.1;locus_tag=NDY25_21995;product=hypothetical protein;protein_id=UUF02480.1;transl_table=11 CP098604.1 Genbank gene 5171825 5172136 . + . ID=gene-NDY25_22000;Name=NDY25_22000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22000 CP098604.1 Protein Homology CDS 5171825 5172136 . + 0 ID=cds-UUF02481.1;Parent=gene-NDY25_22000;Dbxref=NCBI_GP:UUF02481.1;Name=UUF02481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012438427.1;locus_tag=NDY25_22000;product=hypothetical protein;protein_id=UUF02481.1;transl_table=11 CP098604.1 Genbank gene 5172215 5172631 . + . ID=gene-NDY25_22005;Name=NDY25_22005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22005 CP098604.1 Protein Homology CDS 5172215 5172631 . + 0 ID=cds-UUF02482.1;Parent=gene-NDY25_22005;Dbxref=NCBI_GP:UUF02482.1;Name=UUF02482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011347345.1;locus_tag=NDY25_22005;product=hypothetical protein;protein_id=UUF02482.1;transl_table=11 CP098604.1 Genbank gene 5172628 5173977 . + . ID=gene-NDY25_22010;Name=NDY25_22010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22010 CP098604.1 Protein Homology CDS 5172628 5173977 . + 0 ID=cds-UUF02483.1;Parent=gene-NDY25_22010;Dbxref=NCBI_GP:UUF02483.1;Name=UUF02483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448786.1;locus_tag=NDY25_22010;product=sorbosone dehydrogenase family protein;protein_id=UUF02483.1;transl_table=11 CP098604.1 Genbank gene 5174076 5175014 . - . ID=gene-NDY25_22015;Name=NDY25_22015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22015 CP098604.1 Protein Homology CDS 5174076 5175014 . - 0 ID=cds-UUF02484.1;Parent=gene-NDY25_22015;Dbxref=NCBI_GP:UUF02484.1;Name=UUF02484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448785.1;locus_tag=NDY25_22015;product=universal stress protein;protein_id=UUF02484.1;transl_table=11 CP098604.1 Genbank gene 5175029 5175937 . - . ID=gene-NDY25_22020;Name=NDY25_22020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22020 CP098604.1 Protein Homology CDS 5175029 5175937 . - 0 ID=cds-UUF02485.1;Parent=gene-NDY25_22020;Dbxref=NCBI_GP:UUF02485.1;Name=UUF02485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016903866.1;locus_tag=NDY25_22020;product=hypothetical protein;protein_id=UUF02485.1;transl_table=11 CP098604.1 Genbank gene 5176138 5177577 . + . ID=gene-NDY25_22025;Name=NDY25_22025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22025 CP098604.1 Protein Homology CDS 5176138 5177577 . + 0 ID=cds-UUF02486.1;Parent=gene-NDY25_22025;Dbxref=NCBI_GP:UUF02486.1;Name=UUF02486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448783.1;locus_tag=NDY25_22025;product=PAS domain-containing sensor histidine kinase;protein_id=UUF02486.1;transl_table=11 CP098604.1 Genbank gene 5177570 5178214 . + . ID=gene-NDY25_22030;Name=NDY25_22030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22030 CP098604.1 Protein Homology CDS 5177570 5178214 . + 0 ID=cds-UUF02487.1;Parent=gene-NDY25_22030;Dbxref=NCBI_GP:UUF02487.1;Name=UUF02487.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012301.2;locus_tag=NDY25_22030;product=response regulator transcription factor;protein_id=UUF02487.1;transl_table=11 CP098604.1 Genbank gene 5178284 5179327 . + . ID=gene-NDY25_22035;Name=NDY25_22035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22035 CP098604.1 Protein Homology CDS 5178284 5179327 . + 0 ID=cds-UUF02488.1;Parent=gene-NDY25_22035;Dbxref=NCBI_GP:UUF02488.1;Name=UUF02488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448781.1;locus_tag=NDY25_22035;product=Gfo/Idh/MocA family oxidoreductase;protein_id=UUF02488.1;transl_table=11 CP098604.1 Genbank gene 5179346 5179597 . - . ID=gene-NDY25_22040;Name=NDY25_22040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22040 CP098604.1 Protein Homology CDS 5179346 5179597 . - 0 ID=cds-UUF02489.1;Parent=gene-NDY25_22040;Dbxref=NCBI_GP:UUF02489.1;Name=UUF02489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448780.1;locus_tag=NDY25_22040;product=hypothetical protein;protein_id=UUF02489.1;transl_table=11 CP098604.1 Genbank gene 5179594 5180949 . - . ID=gene-NDY25_22045;Name=NDY25_22045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22045 CP098604.1 Protein Homology CDS 5179594 5180949 . - 0 ID=cds-UUF02490.1;Parent=gene-NDY25_22045;Dbxref=NCBI_GP:UUF02490.1;Name=UUF02490.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009602102.1;locus_tag=NDY25_22045;product=TFIIB-type zinc ribbon-containing protein;protein_id=UUF02490.1;transl_table=11 CP098604.1 Genbank gene 5180968 5182119 . - . ID=gene-NDY25_22050;Name=NDY25_22050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22050 CP098604.1 Protein Homology CDS 5180968 5182119 . - 0 ID=cds-UUF02491.1;Parent=gene-NDY25_22050;Dbxref=NCBI_GP:UUF02491.1;Name=UUF02491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012511156.1;locus_tag=NDY25_22050;product=SPFH domain-containing protein;protein_id=UUF02491.1;transl_table=11 CP098604.1 Genbank pseudogene 5182369 5182645 . - . ID=gene-NDY25_22055;Name=NDY25_22055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22055;pseudo=true CP098604.1 Protein Homology CDS 5182369 5182645 . - 0 ID=cds-NDY25_22055;Parent=gene-NDY25_22055;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003474535.1;locus_tag=NDY25_22055;product=hypothetical protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5182892 5185153 . - . ID=gene-NDY25_22060;Name=NDY25_22060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22060 CP098604.1 Protein Homology CDS 5182892 5185153 . - 0 ID=cds-UUF02492.1;Parent=gene-NDY25_22060;Dbxref=NCBI_GP:UUF02492.1;Name=UUF02492.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158529.1;locus_tag=NDY25_22060;product=methyl-accepting chemotaxis protein;protein_id=UUF02492.1;transl_table=11 CP098604.1 Genbank gene 5185433 5186302 . - . ID=gene-NDY25_22065;Name=NDY25_22065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22065 CP098604.1 Protein Homology CDS 5185433 5186302 . - 0 ID=cds-UUF02493.1;Parent=gene-NDY25_22065;Dbxref=NCBI_GP:UUF02493.1;Name=UUF02493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008572908.1;locus_tag=NDY25_22065;product=NmrA/HSCARG family protein;protein_id=UUF02493.1;transl_table=11 CP098604.1 Genbank gene 5186445 5187320 . + . ID=gene-NDY25_22070;Name=NDY25_22070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22070 CP098604.1 Protein Homology CDS 5186445 5187320 . + 0 ID=cds-UUF02494.1;Parent=gene-NDY25_22070;Dbxref=NCBI_GP:UUF02494.1;Name=UUF02494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448774.1;locus_tag=NDY25_22070;product=LysR family transcriptional regulator;protein_id=UUF02494.1;transl_table=11 CP098604.1 Genbank pseudogene 5187589 5188946 . + . ID=gene-NDY25_22075;Name=NDY25_22075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22075;pseudo=true CP098604.1 Protein Homology CDS 5187589 5188946 . + 0 ID=cds-NDY25_22075;Parent=gene-NDY25_22075;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006448773.1;locus_tag=NDY25_22075;product=alpha/beta hydrolase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 5188943 5189992 . + . ID=gene-NDY25_22080;Name=NDY25_22080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22080;pseudo=true CP098604.1 Protein Homology CDS 5188943 5189992 . + 0 ID=cds-NDY25_22080;Parent=gene-NDY25_22080;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016904821.1;locus_tag=NDY25_22080;product=GMC family oxidoreductase;pseudo=true;transl_table=11 CP098604.1 Genbank pseudogene 5190241 5190483 . + . ID=gene-NDY25_22085;Name=NDY25_22085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22085;pseudo=true CP098604.1 Protein Homology CDS 5190241 5190483 . + 0 ID=cds-NDY25_22085;Parent=gene-NDY25_22085;Note=incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1;locus_tag=NDY25_22085;product=integrase core domain-containing protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5190665 5191210 . - . ID=gene-NDY25_22090;Name=NDY25_22090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22090 CP098604.1 GeneMarkS-2+ CDS 5190665 5191210 . - 0 ID=cds-UUF02495.1;Parent=gene-NDY25_22090;Dbxref=NCBI_GP:UUF02495.1;Name=UUF02495.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22090;product=hypothetical protein;protein_id=UUF02495.1;transl_table=11 CP098604.1 Genbank gene 5191911 5192153 . - . ID=gene-NDY25_22095;Name=NDY25_22095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22095 CP098604.1 GeneMarkS-2+ CDS 5191911 5192153 . - 0 ID=cds-UUF02496.1;Parent=gene-NDY25_22095;Dbxref=NCBI_GP:UUF02496.1;Name=UUF02496.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22095;product=hypothetical protein;protein_id=UUF02496.1;transl_table=11 CP098604.1 Genbank gene 5192814 5193869 . - . ID=gene-NDY25_22100;Name=NDY25_22100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22100 CP098604.1 Protein Homology CDS 5192814 5193869 . - 0 ID=cds-UUF02497.1;Parent=gene-NDY25_22100;Dbxref=NCBI_GP:UUF02497.1;Name=UUF02497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158590.1;locus_tag=NDY25_22100;product=DNA-binding protein;protein_id=UUF02497.1;transl_table=11 CP098604.1 Genbank gene 5194140 5195720 . + . ID=gene-NDY25_22105;Name=NDY25_22105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22105 CP098604.1 Protein Homology CDS 5194140 5195720 . + 0 ID=cds-UUF02498.1;Parent=gene-NDY25_22105;Dbxref=NCBI_GP:UUF02498.1;Name=UUF02498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996627.1;locus_tag=NDY25_22105;product=AAA family ATPase;protein_id=UUF02498.1;transl_table=11 CP098604.1 Genbank gene 5195698 5196795 . + . ID=gene-NDY25_22110;Name=NDY25_22110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22110 CP098604.1 Protein Homology CDS 5195698 5196795 . + 0 ID=cds-UUF02499.1;Parent=gene-NDY25_22110;Dbxref=NCBI_GP:UUF02499.1;Name=UUF02499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012480224.1;locus_tag=NDY25_22110;product=AAA family ATPase;protein_id=UUF02499.1;transl_table=11 CP098604.1 Genbank gene 5197013 5197426 . + . ID=gene-NDY25_22115;Name=NDY25_22115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22115 CP098604.1 Protein Homology CDS 5197013 5197426 . + 0 ID=cds-UUF02500.1;Parent=gene-NDY25_22115;Dbxref=NCBI_GP:UUF02500.1;Name=UUF02500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184740.1;locus_tag=NDY25_22115;product=helix-turn-helix domain-containing protein;protein_id=UUF02500.1;transl_table=11 CP098604.1 Genbank gene 5197423 5198697 . + . ID=gene-NDY25_22120;Name=NDY25_22120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22120 CP098604.1 Protein Homology CDS 5197423 5198697 . + 0 ID=cds-UUF02501.1;Parent=gene-NDY25_22120;Dbxref=NCBI_GP:UUF02501.1;Name=UUF02501.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413373.1;locus_tag=NDY25_22120;product=site-specific integrase;protein_id=UUF02501.1;transl_table=11 CP098604.1 Genbank pseudogene 5198721 5201713 . + . ID=gene-NDY25_22125;Name=NDY25_22125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22125;pseudo=true CP098604.1 Protein Homology CDS 5198721 5201713 . + 0 ID=cds-NDY25_22125;Parent=gene-NDY25_22125;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159602.1;locus_tag=NDY25_22125;product=Tn3 family transposase;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5201827 5202768 . + . ID=gene-NDY25_22130;Name=NDY25_22130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22130 CP098604.1 Protein Homology CDS 5201827 5202768 . + 0 ID=cds-UUF02502.1;Parent=gene-NDY25_22130;Dbxref=NCBI_GP:UUF02502.1;Name=UUF02502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345678.1;locus_tag=NDY25_22130;product=DNA-binding protein;protein_id=UUF02502.1;transl_table=11 CP098604.1 Genbank gene 5202863 5203318 . - . ID=gene-NDY25_22135;Name=NDY25_22135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22135 CP098604.1 Protein Homology CDS 5202863 5203318 . - 0 ID=cds-UUF02503.1;Parent=gene-NDY25_22135;Dbxref=NCBI_GP:UUF02503.1;Name=UUF02503.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023888.2;locus_tag=NDY25_22135;product=DUF3693 domain-containing protein;protein_id=UUF02503.1;transl_table=11 CP098604.1 Genbank gene 5203475 5203651 . + . ID=gene-NDY25_22140;Name=NDY25_22140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22140 CP098604.1 GeneMarkS-2+ CDS 5203475 5203651 . + 0 ID=cds-UUF02504.1;Parent=gene-NDY25_22140;Dbxref=NCBI_GP:UUF02504.1;Name=UUF02504.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22140;product=hypothetical protein;protein_id=UUF02504.1;transl_table=11 CP098604.1 Genbank gene 5203648 5203869 . + . ID=gene-NDY25_22145;Name=NDY25_22145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22145 CP098604.1 GeneMarkS-2+ CDS 5203648 5203869 . + 0 ID=cds-UUF02505.1;Parent=gene-NDY25_22145;Dbxref=NCBI_GP:UUF02505.1;Name=UUF02505.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22145;product=hypothetical protein;protein_id=UUF02505.1;transl_table=11 CP098604.1 Genbank gene 5203862 5204062 . + . ID=gene-NDY25_22150;Name=NDY25_22150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22150 CP098604.1 Protein Homology CDS 5203862 5204062 . + 0 ID=cds-UUF02506.1;Parent=gene-NDY25_22150;Dbxref=NCBI_GP:UUF02506.1;Name=UUF02506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017115348.1;locus_tag=NDY25_22150;product=hypothetical protein;protein_id=UUF02506.1;transl_table=11 CP098604.1 Genbank gene 5204247 5204423 . + . ID=gene-NDY25_22155;Name=NDY25_22155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22155 CP098604.1 Protein Homology CDS 5204247 5204423 . + 0 ID=cds-UUF02507.1;Parent=gene-NDY25_22155;Dbxref=NCBI_GP:UUF02507.1;Name=UUF02507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017173011.1;locus_tag=NDY25_22155;product=hypothetical protein;protein_id=UUF02507.1;transl_table=11 CP098604.1 Genbank pseudogene 5204513 5205452 . + . ID=gene-NDY25_22160;Name=NDY25_22160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22160;pseudo=true CP098604.1 Protein Homology CDS 5204513 5205452 . + 0 ID=cds-NDY25_22160;Parent=gene-NDY25_22160;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154894.1;locus_tag=NDY25_22160;product=replication initiation protein;pseudo=true;transl_table=11 CP098604.1 Genbank gene 5205464 5205745 . + . ID=gene-NDY25_22165;Name=NDY25_22165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22165 CP098604.1 Protein Homology CDS 5205464 5205745 . + 0 ID=cds-UUF02508.1;Parent=gene-NDY25_22165;Dbxref=NCBI_GP:UUF02508.1;Name=UUF02508.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171365.1;locus_tag=NDY25_22165;product=G5P family DNA-binding protein;protein_id=UUF02508.1;transl_table=11 CP098604.1 Genbank gene 5205749 5205970 . + . ID=gene-NDY25_22170;Name=NDY25_22170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22170 CP098604.1 GeneMarkS-2+ CDS 5205749 5205970 . + 0 ID=cds-UUF02509.1;Parent=gene-NDY25_22170;Dbxref=NCBI_GP:UUF02509.1;Name=UUF02509.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22170;product=hypothetical protein;protein_id=UUF02509.1;transl_table=11 CP098604.1 Genbank gene 5205988 5206224 . + . ID=gene-NDY25_22175;Name=NDY25_22175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22175 CP098604.1 Protein Homology CDS 5205988 5206224 . + 0 ID=cds-UUF02510.1;Parent=gene-NDY25_22175;Dbxref=NCBI_GP:UUF02510.1;Name=UUF02510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003490393.1;locus_tag=NDY25_22175;product=hypothetical protein;protein_id=UUF02510.1;transl_table=11 CP098604.1 Genbank gene 5206359 5207186 . + . ID=gene-NDY25_22180;Name=NDY25_22180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22180 CP098604.1 GeneMarkS-2+ CDS 5206359 5207186 . + 0 ID=cds-UUF02511.1;Parent=gene-NDY25_22180;Dbxref=NCBI_GP:UUF02511.1;Name=UUF02511.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22180;product=hypothetical protein;protein_id=UUF02511.1;transl_table=11 CP098604.1 Genbank gene 5207313 5207789 . + . ID=gene-NDY25_22185;Name=NDY25_22185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22185 CP098604.1 GeneMarkS-2+ CDS 5207313 5207789 . + 0 ID=cds-UUF02512.1;Parent=gene-NDY25_22185;Dbxref=NCBI_GP:UUF02512.1;Name=UUF02512.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22185;product=hypothetical protein;protein_id=UUF02512.1;transl_table=11 CP098604.1 Genbank gene 5207817 5208137 . + . ID=gene-NDY25_22190;Name=NDY25_22190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22190 CP098604.1 Protein Homology CDS 5207817 5208137 . + 0 ID=cds-UUF02513.1;Parent=gene-NDY25_22190;Dbxref=NCBI_GP:UUF02513.1;Name=UUF02513.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022194.2;locus_tag=NDY25_22190;product=DUF2523 domain-containing protein;protein_id=UUF02513.1;transl_table=11 CP098604.1 Genbank gene 5208134 5208958 . + . ID=gene-NDY25_22195;Name=NDY25_22195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22195 CP098604.1 Protein Homology CDS 5208134 5208958 . + 0 ID=cds-UUF02514.1;Parent=gene-NDY25_22195;Dbxref=NCBI_GP:UUF02514.1;Name=UUF02514.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017518.2;locus_tag=NDY25_22195;product=zonular occludens toxin domain-containing protein;protein_id=UUF02514.1;transl_table=11 CP098604.1 Genbank gene 5209051 5209317 . + . ID=gene-NDY25_22200;Name=NDY25_22200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22200 CP098604.1 GeneMarkS-2+ CDS 5209051 5209317 . + 0 ID=cds-UUF02515.1;Parent=gene-NDY25_22200;Dbxref=NCBI_GP:UUF02515.1;Name=UUF02515.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22200;product=hypothetical protein;protein_id=UUF02515.1;transl_table=11 CP098604.1 Genbank gene 5209314 5209997 . + . ID=gene-NDY25_22205;Name=NDY25_22205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22205 CP098604.1 Protein Homology CDS 5209314 5209997 . + 0 ID=cds-UUF02516.1;Parent=gene-NDY25_22205;Dbxref=NCBI_GP:UUF02516.1;Name=UUF02516.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015979243.1;locus_tag=NDY25_22205;product=TraX family protein;protein_id=UUF02516.1;transl_table=11 CP098604.1 Genbank gene 5210498 5210851 . - . ID=gene-NDY25_22210;Name=NDY25_22210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22210 CP098604.1 GeneMarkS-2+ CDS 5210498 5210851 . - 0 ID=cds-UUF02517.1;Parent=gene-NDY25_22210;Dbxref=NCBI_GP:UUF02517.1;Name=UUF02517.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22210;product=hypothetical protein;protein_id=UUF02517.1;transl_table=11 CP098604.1 Genbank gene 5211058 5211423 . + . ID=gene-NDY25_22215;Name=NDY25_22215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22215 CP098604.1 Protein Homology CDS 5211058 5211423 . + 0 ID=cds-UUF02518.1;Parent=gene-NDY25_22215;Dbxref=NCBI_GP:UUF02518.1;Name=UUF02518.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450394.1;locus_tag=NDY25_22215;product=phage protein;protein_id=UUF02518.1;transl_table=11 CP098604.1 Genbank gene 5211460 5212134 . - . ID=gene-NDY25_22220;Name=NDY25_22220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22220 CP098604.1 Protein Homology CDS 5211460 5212134 . - 0 ID=cds-UUF02519.1;Parent=gene-NDY25_22220;Dbxref=NCBI_GP:UUF02519.1;Name=UUF02519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378718.1;locus_tag=NDY25_22220;product=TraX family protein;protein_id=UUF02519.1;transl_table=11 CP098604.1 Genbank gene 5212131 5212397 . - . ID=gene-NDY25_22225;Name=NDY25_22225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22225 CP098604.1 GeneMarkS-2+ CDS 5212131 5212397 . - 0 ID=cds-UUF02520.1;Parent=gene-NDY25_22225;Dbxref=NCBI_GP:UUF02520.1;Name=UUF02520.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22225;product=hypothetical protein;protein_id=UUF02520.1;transl_table=11 CP098604.1 Genbank gene 5212490 5213314 . - . ID=gene-NDY25_22230;Name=NDY25_22230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22230 CP098604.1 Protein Homology CDS 5212490 5213314 . - 0 ID=cds-UUF02521.1;Parent=gene-NDY25_22230;Dbxref=NCBI_GP:UUF02521.1;Name=UUF02521.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017518.2;locus_tag=NDY25_22230;product=zonular occludens toxin domain-containing protein;protein_id=UUF02521.1;transl_table=11 CP098604.1 Genbank gene 5213311 5213631 . - . ID=gene-NDY25_22235;Name=NDY25_22235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22235 CP098604.1 Protein Homology CDS 5213311 5213631 . - 0 ID=cds-UUF02522.1;Parent=gene-NDY25_22235;Dbxref=NCBI_GP:UUF02522.1;Name=UUF02522.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022194.2;locus_tag=NDY25_22235;product=DUF2523 domain-containing protein;protein_id=UUF02522.1;transl_table=11 CP098604.1 Genbank gene 5213659 5214135 . - . ID=gene-NDY25_22240;Name=NDY25_22240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22240 CP098604.1 GeneMarkS-2+ CDS 5213659 5214135 . - 0 ID=cds-UUF02523.1;Parent=gene-NDY25_22240;Dbxref=NCBI_GP:UUF02523.1;Name=UUF02523.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22240;product=hypothetical protein;protein_id=UUF02523.1;transl_table=11 CP098604.1 Genbank gene 5214327 5215037 . - . ID=gene-NDY25_00005;Name=NDY25_00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_00005 CP098604.1 GeneMarkS-2+ CDS 5214327 5215037 . - 0 ID=cds-UUF02524.1;Parent=gene-NDY25_00005;Dbxref=NCBI_GP:UUF02524.1;Name=UUF02524.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_00005;product=hypothetical protein;protein_id=UUF02524.1;transl_table=11 ##sequence-region CP098605.1 1 93726 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=453602 CP098605.1 Genbank region 1 93726 . + . ID=CP098605.1:1..93726;Dbxref=taxon:453602;Is_circular=true;Name=pOSU493;collection-date=2022;country=USA: PA;gbkey=Src;genome=plasmid;isolation-source=leaf sample;mol_type=genomic DNA;nat-host=geranium;pathovar=pelargonii;plasmid-name=pOSU493;strain=OSU493 CP098605.1 Genbank gene 917 1507 . - . ID=gene-NDY25_22250;Name=NDY25_22250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22250 CP098605.1 Protein Homology CDS 917 1507 . - 0 ID=cds-UUF04816.1;Parent=gene-NDY25_22250;Dbxref=NCBI_GP:UUF04816.1;Name=UUF04816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113463.1;locus_tag=NDY25_22250;product=lytic transglycosylase domain-containing protein;protein_id=UUF04816.1;transl_table=11 CP098605.1 Genbank gene 1500 2096 . - . ID=gene-NDY25_22255;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=NDY25_22255 CP098605.1 Protein Homology CDS 1500 2096 . - 0 ID=cds-UUF04862.1;Parent=gene-NDY25_22255;Dbxref=NCBI_GP:UUF04862.1;Name=UUF04862.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: protein motif:HMM:NF021981.2;locus_tag=NDY25_22255;product=signal peptidase I;protein_id=UUF04862.1;transl_table=11 CP098605.1 Genbank pseudogene 2118 2564 . - . ID=gene-NDY25_22260;Name=NDY25_22260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22260;pseudo=true CP098605.1 Protein Homology CDS 2118 2564 . - 0 ID=cds-NDY25_22260;Parent=gene-NDY25_22260;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238174.1;locus_tag=NDY25_22260;product=DUF2840 domain-containing protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 2897 3232 . - . ID=gene-NDY25_22265;Name=NDY25_22265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22265 CP098605.1 Protein Homology CDS 2897 3232 . - 0 ID=cds-UUF04817.1;Parent=gene-NDY25_22265;Dbxref=NCBI_GP:UUF04817.1;Name=UUF04817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163695.1;locus_tag=NDY25_22265;product=hypothetical protein;protein_id=UUF04817.1;transl_table=11 CP098605.1 Genbank gene 3229 3867 . - . ID=gene-NDY25_22270;Name=NDY25_22270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22270 CP098605.1 Protein Homology CDS 3229 3867 . - 0 ID=cds-UUF04818.1;Parent=gene-NDY25_22270;Dbxref=NCBI_GP:UUF04818.1;Name=UUF04818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163694.1;locus_tag=NDY25_22270;product=ParA family protein;protein_id=UUF04818.1;transl_table=11 CP098605.1 Genbank pseudogene 3991 4694 . - . ID=gene-NDY25_22275;Name=NDY25_22275;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22275;pseudo=true CP098605.1 Protein Homology CDS 3991 4694 . - 0 ID=cds-NDY25_22275;Parent=gene-NDY25_22275;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113458.1;locus_tag=NDY25_22275;product=DNA-binding protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 6135 6956 . - . ID=gene-NDY25_22280;Name=NDY25_22280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22280 CP098605.1 Protein Homology CDS 6135 6956 . - 0 ID=cds-UUF04819.1;Parent=gene-NDY25_22280;Dbxref=NCBI_GP:UUF04819.1;Name=UUF04819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113814.1;locus_tag=NDY25_22280;product=hypothetical protein;protein_id=UUF04819.1;transl_table=11 CP098605.1 Genbank gene 7398 7598 . - . ID=gene-NDY25_22285;Name=NDY25_22285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22285 CP098605.1 GeneMarkS-2+ CDS 7398 7598 . - 0 ID=cds-UUF04820.1;Parent=gene-NDY25_22285;Dbxref=NCBI_GP:UUF04820.1;Name=UUF04820.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22285;product=hypothetical protein;protein_id=UUF04820.1;transl_table=11 CP098605.1 Genbank gene 8102 8497 . - . ID=gene-NDY25_22290;Name=NDY25_22290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22290 CP098605.1 Protein Homology CDS 8102 8497 . - 0 ID=cds-UUF04821.1;Parent=gene-NDY25_22290;Dbxref=NCBI_GP:UUF04821.1;Name=UUF04821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1;locus_tag=NDY25_22290;product=type II toxin-antitoxin system VapC family toxin;protein_id=UUF04821.1;transl_table=11 CP098605.1 Genbank gene 8494 8745 . - . ID=gene-NDY25_22295;Name=NDY25_22295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22295 CP098605.1 Protein Homology CDS 8494 8745 . - 0 ID=cds-UUF04822.1;Parent=gene-NDY25_22295;Dbxref=NCBI_GP:UUF04822.1;Name=UUF04822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1;locus_tag=NDY25_22295;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=UUF04822.1;transl_table=11 CP098605.1 Genbank pseudogene 8927 9492 . + . ID=gene-NDY25_22300;Name=NDY25_22300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22300;pseudo=true CP098605.1 Protein Homology CDS 8927 9492 . + 0 ID=cds-NDY25_22300;Parent=gene-NDY25_22300;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1;locus_tag=NDY25_22300;product=recombinase family protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 9735 10190 . - . ID=gene-NDY25_22305;Name=NDY25_22305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22305 CP098605.1 Protein Homology CDS 9735 10190 . - 0 ID=cds-UUF04823.1;Parent=gene-NDY25_22305;Dbxref=NCBI_GP:UUF04823.1;Name=UUF04823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113410.1;locus_tag=NDY25_22305;product=hypothetical protein;protein_id=UUF04823.1;transl_table=11 CP098605.1 Genbank gene 10374 10703 . - . ID=gene-NDY25_22310;Name=NDY25_22310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22310 CP098605.1 Protein Homology CDS 10374 10703 . - 0 ID=cds-UUF04824.1;Parent=gene-NDY25_22310;Dbxref=NCBI_GP:UUF04824.1;Name=UUF04824.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025107.2;locus_tag=NDY25_22310;product=helix-turn-helix domain-containing protein;protein_id=UUF04824.1;transl_table=11 CP098605.1 Genbank pseudogene 10837 12203 . + . ID=gene-NDY25_22315;Name=NDY25_22315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22315;pseudo=true CP098605.1 Protein Homology CDS 10837 12203 . + 0 ID=cds-NDY25_22315;Parent=gene-NDY25_22315;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011035783.1;locus_tag=NDY25_22315;product=IS5 family transposase;pseudo=true;transl_table=11 CP098605.1 Genbank gene 12338 12502 . - . ID=gene-NDY25_22320;Name=NDY25_22320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22320 CP098605.1 GeneMarkS-2+ CDS 12338 12502 . - 0 ID=cds-UUF04825.1;Parent=gene-NDY25_22320;Dbxref=NCBI_GP:UUF04825.1;Name=UUF04825.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22320;product=hypothetical protein;protein_id=UUF04825.1;transl_table=11 CP098605.1 Genbank gene 13133 13543 . + . ID=gene-NDY25_22325;Name=NDY25_22325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22325 CP098605.1 GeneMarkS-2+ CDS 13133 13543 . + 0 ID=cds-UUF04826.1;Parent=gene-NDY25_22325;Dbxref=NCBI_GP:UUF04826.1;Name=UUF04826.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22325;product=type III effector;protein_id=UUF04826.1;transl_table=11 CP098605.1 Genbank gene 13708 14658 . + . ID=gene-NDY25_22330;Name=NDY25_22330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22330 CP098605.1 Protein Homology CDS 13708 14658 . + 0 ID=cds-UUF04827.1;Parent=gene-NDY25_22330;Dbxref=NCBI_GP:UUF04827.1;Name=UUF04827.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1;locus_tag=NDY25_22330;product=IS481 family transposase;protein_id=UUF04827.1;transl_table=11 CP098605.1 Genbank gene 14655 14831 . - . ID=gene-NDY25_22335;Name=NDY25_22335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22335 CP098605.1 GeneMarkS-2+ CDS 14655 14831 . - 0 ID=cds-UUF04828.1;Parent=gene-NDY25_22335;Dbxref=NCBI_GP:UUF04828.1;Name=UUF04828.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22335;product=hypothetical protein;protein_id=UUF04828.1;transl_table=11 CP098605.1 Genbank gene 14973 15440 . - . ID=gene-NDY25_22340;Name=NDY25_22340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22340 CP098605.1 Protein Homology CDS 14973 15440 . - 0 ID=cds-UUF04829.1;Parent=gene-NDY25_22340;Dbxref=NCBI_GP:UUF04829.1;Name=UUF04829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017160723.1;locus_tag=NDY25_22340;product=hypothetical protein;protein_id=UUF04829.1;transl_table=11 CP098605.1 Genbank gene 15827 16990 . - . ID=gene-NDY25_22345;Name=NDY25_22345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22345 CP098605.1 Protein Homology CDS 15827 16990 . - 0 ID=cds-UUF04863.1;Parent=gene-NDY25_22345;Dbxref=NCBI_GP:UUF04863.1;Name=UUF04863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017155015.1;locus_tag=NDY25_22345;product=alpha/beta hydrolase;protein_id=UUF04863.1;transl_table=11 CP098605.1 Genbank pseudogene 17385 17690 . - . ID=gene-NDY25_22350;Name=NDY25_22350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22350;pseudo=true CP098605.1 Protein Homology CDS 17385 17690 . - 0 ID=cds-NDY25_22350;Parent=gene-NDY25_22350;Note=incomplete%3B partial on complete genome%3B missing N-terminus;Ontology_term=GO:0006310,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1;locus_tag=NDY25_22350;product=recombinase family protein;pseudo=true;transl_table=11 CP098605.1 Genbank pseudogene 17873 18430 . + . ID=gene-NDY25_22355;Name=NDY25_22355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22355;pseudo=true CP098605.1 Protein Homology CDS 17873 18430 . + 0 ID=cds-NDY25_22355;Parent=gene-NDY25_22355;Note=incomplete%3B partial on complete genome%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026241.2;locus_tag=NDY25_22355;product=type III secretion system effector protein;pseudo=true;transl_table=11 CP098605.1 Genbank pseudogene 18527 19175 . - . ID=gene-NDY25_22360;Name=NDY25_22360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22360;pseudo=true CP098605.1 Protein Homology CDS 18527 19175 . - 0 ID=cds-NDY25_22360;Parent=gene-NDY25_22360;Note=frameshifted;Ontology_term=GO:0006310,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113411.1;locus_tag=NDY25_22360;product=recombinase family protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 19522 19707 . - . ID=gene-NDY25_22365;Name=NDY25_22365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22365 CP098605.1 GeneMarkS-2+ CDS 19522 19707 . - 0 ID=cds-UUF04830.1;Parent=gene-NDY25_22365;Dbxref=NCBI_GP:UUF04830.1;Name=UUF04830.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22365;product=hypothetical protein;protein_id=UUF04830.1;transl_table=11 CP098605.1 Genbank gene 19704 19943 . - . ID=gene-NDY25_22370;Name=NDY25_22370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22370 CP098605.1 Protein Homology CDS 19704 19943 . - 0 ID=cds-UUF04831.1;Parent=gene-NDY25_22370;Dbxref=NCBI_GP:UUF04831.1;Name=UUF04831.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017163910.1;locus_tag=NDY25_22370;product=hypothetical protein;protein_id=UUF04831.1;transl_table=11 CP098605.1 Genbank gene 20006 20365 . - . ID=gene-NDY25_22375;Name=NDY25_22375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22375 CP098605.1 Protein Homology CDS 20006 20365 . - 0 ID=cds-UUF04832.1;Parent=gene-NDY25_22375;Dbxref=NCBI_GP:UUF04832.1;Name=UUF04832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005998073.1;locus_tag=NDY25_22375;product=hypothetical protein;protein_id=UUF04832.1;transl_table=11 CP098605.1 Genbank gene 20769 20951 . - . ID=gene-NDY25_22380;Name=NDY25_22380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22380 CP098605.1 GeneMarkS-2+ CDS 20769 20951 . - 0 ID=cds-UUF04833.1;Parent=gene-NDY25_22380;Dbxref=NCBI_GP:UUF04833.1;Name=UUF04833.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22380;product=hypothetical protein;protein_id=UUF04833.1;transl_table=11 CP098605.1 Genbank gene 21109 21516 . - . ID=gene-NDY25_22385;Name=NDY25_22385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22385 CP098605.1 GeneMarkS-2+ CDS 21109 21516 . - 0 ID=cds-UUF04834.1;Parent=gene-NDY25_22385;Dbxref=NCBI_GP:UUF04834.1;Name=UUF04834.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22385;product=hypothetical protein;protein_id=UUF04834.1;transl_table=11 CP098605.1 Genbank gene 21527 21814 . - . ID=gene-NDY25_22390;Name=NDY25_22390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22390 CP098605.1 Protein Homology CDS 21527 21814 . - 0 ID=cds-UUF04835.1;Parent=gene-NDY25_22390;Dbxref=NCBI_GP:UUF04835.1;Name=UUF04835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005997470.1;locus_tag=NDY25_22390;product=hypothetical protein;protein_id=UUF04835.1;transl_table=11 CP098605.1 Genbank gene 21811 22395 . - . ID=gene-NDY25_22395;Name=NDY25_22395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22395 CP098605.1 GeneMarkS-2+ CDS 21811 22395 . - 0 ID=cds-UUF04836.1;Parent=gene-NDY25_22395;Dbxref=NCBI_GP:UUF04836.1;Name=UUF04836.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22395;product=hypothetical protein;protein_id=UUF04836.1;transl_table=11 CP098605.1 Genbank gene 22786 23931 . - . ID=gene-NDY25_22400;Name=NDY25_22400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22400 CP098605.1 Protein Homology CDS 22786 23931 . - 0 ID=cds-UUF04837.1;Parent=gene-NDY25_22400;Dbxref=NCBI_GP:UUF04837.1;Name=UUF04837.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: protein motif:HMM:NF013311.2;locus_tag=NDY25_22400;product=DNA topoisomerase;protein_id=UUF04837.1;transl_table=11 CP098605.1 Genbank gene 24133 24459 . - . ID=gene-NDY25_22405;Name=NDY25_22405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22405 CP098605.1 Protein Homology CDS 24133 24459 . - 0 ID=cds-UUF04838.1;Parent=gene-NDY25_22405;Dbxref=NCBI_GP:UUF04838.1;Name=UUF04838.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: protein motif:HMM:NF013311.2;locus_tag=NDY25_22405;product=DNA topoisomerase;protein_id=UUF04838.1;transl_table=11 CP098605.1 Genbank gene 24456 24959 . - . ID=gene-NDY25_22410;Name=NDY25_22410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22410 CP098605.1 Protein Homology CDS 24456 24959 . - 0 ID=cds-UUF04839.1;Parent=gene-NDY25_22410;Dbxref=NCBI_GP:UUF04839.1;Name=UUF04839.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013878.2;locus_tag=NDY25_22410;product=toprim domain-containing protein;protein_id=UUF04839.1;transl_table=11 CP098605.1 Genbank gene 24962 25168 . - . ID=gene-NDY25_22415;Name=NDY25_22415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22415 CP098605.1 Protein Homology CDS 24962 25168 . - 0 ID=cds-UUF04840.1;Parent=gene-NDY25_22415;Dbxref=NCBI_GP:UUF04840.1;Name=UUF04840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113417.1;locus_tag=NDY25_22415;product=hypothetical protein;protein_id=UUF04840.1;transl_table=11 CP098605.1 Genbank gene 25282 25521 . - . ID=gene-NDY25_22420;Name=NDY25_22420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22420 CP098605.1 Protein Homology CDS 25282 25521 . - 0 ID=cds-UUF04841.1;Parent=gene-NDY25_22420;Dbxref=NCBI_GP:UUF04841.1;Name=UUF04841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575015.1;locus_tag=NDY25_22420;product=hypothetical protein;protein_id=UUF04841.1;transl_table=11 CP098605.1 Genbank gene 25532 25894 . - . ID=gene-NDY25_22425;Name=NDY25_22425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22425 CP098605.1 Protein Homology CDS 25532 25894 . - 0 ID=cds-UUF04842.1;Parent=gene-NDY25_22425;Dbxref=NCBI_GP:UUF04842.1;Name=UUF04842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008575014.1;locus_tag=NDY25_22425;product=hypothetical protein;protein_id=UUF04842.1;transl_table=11 CP098605.1 Genbank gene 25907 26887 . - . ID=gene-NDY25_22430;Name=NDY25_22430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22430 CP098605.1 Protein Homology CDS 25907 26887 . - 0 ID=cds-UUF04843.1;Parent=gene-NDY25_22430;Dbxref=NCBI_GP:UUF04843.1;Name=UUF04843.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015688.2;locus_tag=NDY25_22430;product=TrbI/VirB10 family protein;protein_id=UUF04843.1;transl_table=11 CP098605.1 Genbank gene 27081 27260 . - . ID=gene-NDY25_22435;Name=NDY25_22435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22435 CP098605.1 GeneMarkS-2+ CDS 27081 27260 . - 0 ID=cds-UUF04844.1;Parent=gene-NDY25_22435;Dbxref=NCBI_GP:UUF04844.1;Name=UUF04844.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22435;product=hypothetical protein;protein_id=UUF04844.1;transl_table=11 CP098605.1 Genbank pseudogene 27276 28267 . - . ID=gene-NDY25_22440;Name=trbG;gbkey=Gene;gene=trbG;gene_biotype=pseudogene;locus_tag=NDY25_22440;pseudo=true CP098605.1 Protein Homology CDS 27276 28267 . - 0 ID=cds-NDY25_22440;Parent=gene-NDY25_22440;Note=frameshifted;Ontology_term=GO:0009291;gbkey=CDS;gene=trbG;go_process=unidirectional conjugation|0009291||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238157.1;locus_tag=NDY25_22440;product=P-type conjugative transfer protein TrbG;pseudo=true;transl_table=11 CP098605.1 Genbank pseudogene 28281 28942 . - . ID=gene-NDY25_22445;Name=trbF;gbkey=Gene;gene=trbF;gene_biotype=pseudogene;locus_tag=NDY25_22445;pseudo=true CP098605.1 Protein Homology CDS 28281 28942 . - 0 ID=cds-NDY25_22445;Parent=gene-NDY25_22445;Note=frameshifted;gbkey=CDS;gene=trbF;inference=COORDINATES: protein motif:HMM:NF016238.2;locus_tag=NDY25_22445;product=conjugal transfer protein TrbF;pseudo=true;transl_table=11 CP098605.1 Genbank gene 29009 29785 . - . ID=gene-NDY25_22450;Name=NDY25_22450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22450 CP098605.1 GeneMarkS-2+ CDS 29009 29785 . - 0 ID=cds-UUF04845.1;Parent=gene-NDY25_22450;Dbxref=NCBI_GP:UUF04845.1;Name=UUF04845.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22450;product=hypothetical protein;protein_id=UUF04845.1;transl_table=11 CP098605.1 Genbank gene 29803 30486 . - . ID=gene-NDY25_22455;Name=NDY25_22455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22455 CP098605.1 Protein Homology CDS 29803 30486 . - 0 ID=cds-UUF04846.1;Parent=gene-NDY25_22455;Dbxref=NCBI_GP:UUF04846.1;Name=UUF04846.1;Ontology_term=GO:0030255;gbkey=CDS;go_process=protein secretion by the type IV secretion system|0030255||IEA;inference=COORDINATES: protein motif:HMM:NF016491.2;locus_tag=NDY25_22455;product=type IV secretion system protein;protein_id=UUF04846.1;transl_table=11 CP098605.1 Genbank gene 30545 30898 . - . ID=gene-NDY25_22460;Name=NDY25_22460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22460 CP098605.1 GeneMarkS-2+ CDS 30545 30898 . - 0 ID=cds-UUF04847.1;Parent=gene-NDY25_22460;Dbxref=NCBI_GP:UUF04847.1;Name=UUF04847.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22460;product=hypothetical protein;protein_id=UUF04847.1;transl_table=11 CP098605.1 Genbank gene 31184 31849 . - . ID=gene-NDY25_22465;Name=NDY25_22465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22465 CP098605.1 GeneMarkS-2+ CDS 31184 31849 . - 0 ID=cds-UUF04848.1;Parent=gene-NDY25_22465;Dbxref=NCBI_GP:UUF04848.1;Name=UUF04848.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22465;product=hypothetical protein;protein_id=UUF04848.1;transl_table=11 CP098605.1 Genbank gene 32068 32730 . - . ID=gene-NDY25_22470;Name=NDY25_22470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22470 CP098605.1 Protein Homology CDS 32068 32730 . - 0 ID=cds-UUF04849.1;Parent=gene-NDY25_22470;Dbxref=NCBI_GP:UUF04849.1;Name=UUF04849.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF040179.1;locus_tag=NDY25_22470;product=DUF853 family protein;protein_id=UUF04849.1;transl_table=11 CP098605.1 Genbank gene 32718 34637 . - . ID=gene-NDY25_22475;Name=NDY25_22475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22475 CP098605.1 Protein Homology CDS 32718 34637 . - 0 ID=cds-UUF04850.1;Parent=gene-NDY25_22475;Dbxref=NCBI_GP:UUF04850.1;Name=UUF04850.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015118.2;locus_tag=NDY25_22475;product=DUF853 domain-containing protein;protein_id=UUF04850.1;transl_table=11 CP098605.1 Genbank gene 34705 34971 . - . ID=gene-NDY25_22480;Name=NDY25_22480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22480 CP098605.1 Protein Homology CDS 34705 34971 . - 0 ID=cds-UUF04851.1;Parent=gene-NDY25_22480;Dbxref=NCBI_GP:UUF04851.1;Name=UUF04851.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016957.2;locus_tag=NDY25_22480;product=VirB3 family type IV secretion system protein;protein_id=UUF04851.1;transl_table=11 CP098605.1 Genbank gene 34974 35294 . - . ID=gene-NDY25_22485;Name=NDY25_22485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22485 CP098605.1 Protein Homology CDS 34974 35294 . - 0 ID=cds-UUF04852.1;Parent=gene-NDY25_22485;Dbxref=NCBI_GP:UUF04852.1;Name=UUF04852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017162817.1;locus_tag=NDY25_22485;product=TrbC/VirB2 family protein;protein_id=UUF04852.1;transl_table=11 CP098605.1 Genbank pseudogene 35364 35546 . - . ID=gene-NDY25_22490;Name=NDY25_22490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22490;pseudo=true CP098605.1 Protein Homology CDS 35364 35546 . - 0 ID=cds-NDY25_22490;Parent=gene-NDY25_22490;Note=incomplete%3B partial on complete genome%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995704.1;locus_tag=NDY25_22490;product=type II/IV secretion system family protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 35667 38624 . - . ID=gene-NDY25_22495;Name=NDY25_22495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22495 CP098605.1 Protein Homology CDS 35667 38624 . - 0 ID=cds-UUF04853.1;Parent=gene-NDY25_22495;Dbxref=NCBI_GP:UUF04853.1;Name=UUF04853.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011052967.1;locus_tag=NDY25_22495;product=Tn3 family transposase;protein_id=UUF04853.1;transl_table=11 CP098605.1 Genbank gene 38648 39919 . - . ID=gene-NDY25_22500;Name=NDY25_22500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22500 CP098605.1 Protein Homology CDS 38648 39919 . - 0 ID=cds-UUF04854.1;Parent=gene-NDY25_22500;Dbxref=NCBI_GP:UUF04854.1;Name=UUF04854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413373.1;locus_tag=NDY25_22500;product=site-specific integrase;protein_id=UUF04854.1;transl_table=11 CP098605.1 Genbank gene 39916 40329 . - . ID=gene-NDY25_22505;Name=NDY25_22505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22505 CP098605.1 Protein Homology CDS 39916 40329 . - 0 ID=cds-UUF04855.1;Parent=gene-NDY25_22505;Dbxref=NCBI_GP:UUF04855.1;Name=UUF04855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019184740.1;locus_tag=NDY25_22505;product=helix-turn-helix domain-containing protein;protein_id=UUF04855.1;transl_table=11 CP098605.1 Genbank pseudogene 40420 42375 . + . ID=gene-NDY25_22510;Name=NDY25_22510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22510;pseudo=true CP098605.1 Protein Homology CDS 40420 42375 . + 0 ID=cds-NDY25_22510;Parent=gene-NDY25_22510;Note=frameshifted;Ontology_term=GO:0034755,GO:0005381,GO:0016020,GO:0033573;gbkey=CDS;go_component=membrane|0016020||IEA,high-affinity iron permease complex|0033573||IEA;go_function=iron ion transmembrane transporter activity|0005381||IEA;go_process=iron ion transmembrane transport|0034755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012480229.1;locus_tag=NDY25_22510;product=FTR1 family protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 42400 43017 . + . ID=gene-NDY25_22515;Name=NDY25_22515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22515 CP098605.1 Protein Homology CDS 42400 43017 . + 0 ID=cds-UUF04856.1;Parent=gene-NDY25_22515;Dbxref=NCBI_GP:UUF04856.1;Name=UUF04856.1;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=cation transmembrane transporter activity|0008324||IEA;go_process=cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413376.1;locus_tag=NDY25_22515;product=cation transporter;protein_id=UUF04856.1;transl_table=11 CP098605.1 Genbank gene 43014 43370 . + . ID=gene-NDY25_22520;Name=NDY25_22520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22520 CP098605.1 Protein Homology CDS 43014 43370 . + 0 ID=cds-UUF04857.1;Parent=gene-NDY25_22520;Dbxref=NCBI_GP:UUF04857.1;Name=UUF04857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012480228.1;locus_tag=NDY25_22520;product=hypothetical protein;protein_id=UUF04857.1;transl_table=11 CP098605.1 Genbank pseudogene 43457 44733 . + . ID=gene-NDY25_22525;Name=NDY25_22525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22525;pseudo=true CP098605.1 Protein Homology CDS 43457 44733 . + 0 ID=cds-NDY25_22525;Parent=gene-NDY25_22525;Note=frameshifted;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012480227.1;locus_tag=NDY25_22525;product=TolC family protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 44730 45677 . + . ID=gene-NDY25_22530;Name=NDY25_22530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22530 CP098605.1 Protein Homology CDS 44730 45677 . + 0 ID=cds-UUF04858.1;Parent=gene-NDY25_22530;Dbxref=NCBI_GP:UUF04858.1;Name=UUF04858.1;Ontology_term=GO:0006810,GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005413378.1;locus_tag=NDY25_22530;product=efflux RND transporter periplasmic adaptor subunit;protein_id=UUF04858.1;transl_table=11 CP098605.1 Genbank gene 45686 48883 . + . ID=gene-NDY25_22535;Name=NDY25_22535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22535 CP098605.1 Protein Homology CDS 45686 48883 . + 0 ID=cds-UUF04859.1;Parent=gene-NDY25_22535;Dbxref=NCBI_GP:UUF04859.1;Name=UUF04859.1;Ontology_term=GO:0051139,GO:0016021;gbkey=CDS;go_component=integral component of membrane|0016021||IEA;go_function=metal ion:proton antiporter activity|0051139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996619.1;locus_tag=NDY25_22535;product=CusA/CzcA family heavy metal efflux RND transporter;protein_id=UUF04859.1;transl_table=11 CP098605.1 Genbank gene 48880 49158 . + . ID=gene-NDY25_22540;Name=NDY25_22540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22540 CP098605.1 Protein Homology CDS 48880 49158 . + 0 ID=cds-UUF04764.1;Parent=gene-NDY25_22540;Dbxref=NCBI_GP:UUF04764.1;Name=UUF04764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159622.1;locus_tag=NDY25_22540;product=hypothetical protein;protein_id=UUF04764.1;transl_table=11 CP098605.1 Genbank gene 49174 50271 . - . ID=gene-NDY25_22545;Name=NDY25_22545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22545 CP098605.1 Protein Homology CDS 49174 50271 . - 0 ID=cds-UUF04765.1;Parent=gene-NDY25_22545;Dbxref=NCBI_GP:UUF04765.1;Name=UUF04765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012480224.1;locus_tag=NDY25_22545;product=AAA family ATPase;protein_id=UUF04765.1;transl_table=11 CP098605.1 Genbank gene 50249 51829 . - . ID=gene-NDY25_22550;Name=NDY25_22550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22550 CP098605.1 Protein Homology CDS 50249 51829 . - 0 ID=cds-UUF04766.1;Parent=gene-NDY25_22550;Dbxref=NCBI_GP:UUF04766.1;Name=UUF04766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005996627.1;locus_tag=NDY25_22550;product=AAA family ATPase;protein_id=UUF04766.1;transl_table=11 CP098605.1 Genbank pseudogene 52102 53153 . + . ID=gene-NDY25_22555;Name=NDY25_22555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22555;pseudo=true CP098605.1 Protein Homology CDS 52102 53153 . + 0 ID=cds-NDY25_22555;Parent=gene-NDY25_22555;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159630.1;locus_tag=NDY25_22555;product=DNA-binding protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 53264 53461 . + . ID=gene-NDY25_22560;Name=NDY25_22560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22560 CP098605.1 GeneMarkS-2+ CDS 53264 53461 . + 0 ID=cds-UUF04767.1;Parent=gene-NDY25_22560;Dbxref=NCBI_GP:UUF04767.1;Name=UUF04767.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22560;product=hypothetical protein;protein_id=UUF04767.1;transl_table=11 CP098605.1 Genbank gene 53458 53823 . + . ID=gene-NDY25_22565;Name=NDY25_22565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22565 CP098605.1 Protein Homology CDS 53458 53823 . + 0 ID=cds-UUF04768.1;Parent=gene-NDY25_22565;Dbxref=NCBI_GP:UUF04768.1;Name=UUF04768.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014825.2;locus_tag=NDY25_22565;product=SEC-C domain-containing protein;protein_id=UUF04768.1;transl_table=11 CP098605.1 Genbank gene 53827 53929 . - . ID=gene-NDY25_22570;Name=NDY25_22570;gbkey=Gene;gene_biotype=tRNA;locus_tag=NDY25_22570 CP098605.1 tRNAscan-SE tRNA 53827 53929 . - . ID=rna-NDY25_22570;Parent=gene-NDY25_22570;anticodon=(pos:complement(53892..53894));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_22570;product=tRNA-Ile CP098605.1 tRNAscan-SE exon 53827 53929 . - . ID=exon-NDY25_22570-1;Parent=rna-NDY25_22570;anticodon=(pos:complement(53892..53894));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.7;locus_tag=NDY25_22570;product=tRNA-Ile CP098605.1 Genbank gene 54022 54573 . - . ID=gene-NDY25_22575;Name=NDY25_22575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22575 CP098605.1 Protein Homology CDS 54022 54573 . - 0 ID=cds-UUF04769.1;Parent=gene-NDY25_22575;Dbxref=NCBI_GP:UUF04769.1;Name=UUF04769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014159632.1;locus_tag=NDY25_22575;product=3'-5' exoribonuclease;protein_id=UUF04769.1;transl_table=11 CP098605.1 Genbank gene 54719 55321 . + . ID=gene-NDY25_22580;Name=NDY25_22580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22580 CP098605.1 Protein Homology CDS 54719 55321 . + 0 ID=cds-UUF04770.1;Parent=gene-NDY25_22580;Dbxref=NCBI_GP:UUF04770.1;Name=UUF04770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450104.1;locus_tag=NDY25_22580;product=hypothetical protein;protein_id=UUF04770.1;transl_table=11 CP098605.1 Genbank gene 55672 56136 . + . ID=gene-NDY25_22585;Name=NDY25_22585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22585 CP098605.1 Protein Homology CDS 55672 56136 . + 0 ID=cds-UUF04771.1;Parent=gene-NDY25_22585;Dbxref=NCBI_GP:UUF04771.1;Name=UUF04771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006450103.1;locus_tag=NDY25_22585;product=hypothetical protein;protein_id=UUF04771.1;transl_table=11 CP098605.1 Genbank gene 56183 56518 . - . ID=gene-NDY25_22590;Name=NDY25_22590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22590 CP098605.1 GeneMarkS-2+ CDS 56183 56518 . - 0 ID=cds-UUF04772.1;Parent=gene-NDY25_22590;Dbxref=NCBI_GP:UUF04772.1;Name=UUF04772.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22590;product=hypothetical protein;protein_id=UUF04772.1;transl_table=11 CP098605.1 Genbank gene 56579 56899 . - . ID=gene-NDY25_22595;Name=NDY25_22595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22595 CP098605.1 Protein Homology CDS 56579 56899 . - 0 ID=cds-UUF04773.1;Parent=gene-NDY25_22595;Dbxref=NCBI_GP:UUF04773.1;Name=UUF04773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005924088.1;locus_tag=NDY25_22595;product=hypothetical protein;protein_id=UUF04773.1;transl_table=11 CP098605.1 Genbank gene 57115 57573 . + . ID=gene-NDY25_22600;Name=NDY25_22600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22600 CP098605.1 Protein Homology CDS 57115 57573 . + 0 ID=cds-UUF04860.1;Parent=gene-NDY25_22600;Dbxref=NCBI_GP:UUF04860.1;Name=UUF04860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017166857.1;locus_tag=NDY25_22600;product=hypothetical protein;protein_id=UUF04860.1;transl_table=11 CP098605.1 Genbank gene 57577 57882 . + . ID=gene-NDY25_22605;Name=NDY25_22605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22605 CP098605.1 Protein Homology CDS 57577 57882 . + 0 ID=cds-UUF04774.1;Parent=gene-NDY25_22605;Dbxref=NCBI_GP:UUF04774.1;Name=UUF04774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002718015.1;locus_tag=NDY25_22605;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=UUF04774.1;transl_table=11 CP098605.1 Genbank gene 57999 58319 . + . ID=gene-NDY25_22610;Name=NDY25_22610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22610 CP098605.1 Protein Homology CDS 57999 58319 . + 0 ID=cds-UUF04775.1;Parent=gene-NDY25_22610;Dbxref=NCBI_GP:UUF04775.1;Name=UUF04775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017158333.1;locus_tag=NDY25_22610;product=hypothetical protein;protein_id=UUF04775.1;transl_table=11 CP098605.1 Genbank gene 58496 59989 . + . ID=gene-NDY25_22615;Name=NDY25_22615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22615 CP098605.1 Protein Homology CDS 58496 59989 . + 0 ID=cds-UUF04776.1;Parent=gene-NDY25_22615;Dbxref=NCBI_GP:UUF04776.1;Name=UUF04776.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020750542.1;locus_tag=NDY25_22615;product=replication protein;protein_id=UUF04776.1;transl_table=11 CP098605.1 Genbank gene 60200 60523 . + . ID=gene-NDY25_22620;Name=NDY25_22620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22620 CP098605.1 Protein Homology CDS 60200 60523 . + 0 ID=cds-UUF04777.1;Parent=gene-NDY25_22620;Dbxref=NCBI_GP:UUF04777.1;Name=UUF04777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015042066.1;locus_tag=NDY25_22620;product=hypothetical protein;protein_id=UUF04777.1;transl_table=11 CP098605.1 Genbank gene 60835 61476 . + . ID=gene-NDY25_22625;Name=NDY25_22625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22625 CP098605.1 Protein Homology CDS 60835 61476 . + 0 ID=cds-UUF04778.1;Parent=gene-NDY25_22625;Dbxref=NCBI_GP:UUF04778.1;Name=UUF04778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003491420.1;locus_tag=NDY25_22625;product=DNA-binding protein;protein_id=UUF04778.1;transl_table=11 CP098605.1 Genbank gene 61489 62046 . + . ID=gene-NDY25_22630;Name=NDY25_22630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22630 CP098605.1 Protein Homology CDS 61489 62046 . + 0 ID=cds-UUF04779.1;Parent=gene-NDY25_22630;Dbxref=NCBI_GP:UUF04779.1;Name=UUF04779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017171841.1;locus_tag=NDY25_22630;product=restriction endonuclease;protein_id=UUF04779.1;transl_table=11 CP098605.1 Genbank gene 62130 62366 . + . ID=gene-NDY25_22635;Name=NDY25_22635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22635 CP098605.1 Protein Homology CDS 62130 62366 . + 0 ID=cds-UUF04780.1;Parent=gene-NDY25_22635;Dbxref=NCBI_GP:UUF04780.1;Name=UUF04780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011345676.1;locus_tag=NDY25_22635;product=hypothetical protein;protein_id=UUF04780.1;transl_table=11 CP098605.1 Genbank gene 63660 65741 . + . ID=gene-NDY25_22640;Name=NDY25_22640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22640 CP098605.1 Protein Homology CDS 63660 65741 . + 0 ID=cds-UUF04781.1;Parent=gene-NDY25_22640;Dbxref=NCBI_GP:UUF04781.1;Name=UUF04781.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014273.2;locus_tag=NDY25_22640;product=ParB/RepB/Spo0J family partition protein;protein_id=UUF04781.1;transl_table=11 CP098605.1 Genbank gene 65800 66240 . + . ID=gene-NDY25_22645;Name=NDY25_22645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22645 CP098605.1 GeneMarkS-2+ CDS 65800 66240 . + 0 ID=cds-UUF04782.1;Parent=gene-NDY25_22645;Dbxref=NCBI_GP:UUF04782.1;Name=UUF04782.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22645;product=hypothetical protein;protein_id=UUF04782.1;transl_table=11 CP098605.1 Genbank gene 66144 66866 . + . ID=gene-NDY25_22650;Name=NDY25_22650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22650 CP098605.1 Protein Homology CDS 66144 66866 . + 0 ID=cds-UUF04783.1;Parent=gene-NDY25_22650;Dbxref=NCBI_GP:UUF04783.1;Name=UUF04783.1;Ontology_term=GO:0006306,GO:0003677,GO:0008170;gbkey=CDS;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;go_process=DNA methylation|0006306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019054416.1;locus_tag=NDY25_22650;product=N-6 DNA methylase;protein_id=UUF04783.1;transl_table=11 CP098605.1 Genbank gene 66973 67185 . - . ID=gene-NDY25_22655;Name=NDY25_22655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22655 CP098605.1 GeneMarkS-2+ CDS 66973 67185 . - 0 ID=cds-UUF04784.1;Parent=gene-NDY25_22655;Dbxref=NCBI_GP:UUF04784.1;Name=UUF04784.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22655;product=hypothetical protein;protein_id=UUF04784.1;transl_table=11 CP098605.1 Genbank gene 68628 69452 . + . ID=gene-NDY25_22660;Name=NDY25_22660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22660 CP098605.1 Protein Homology CDS 68628 69452 . + 0 ID=cds-UUF04785.1;Parent=gene-NDY25_22660;Dbxref=NCBI_GP:UUF04785.1;Name=UUF04785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006156708.1;locus_tag=NDY25_22660;product=DUF945 domain-containing protein;protein_id=UUF04785.1;transl_table=11 CP098605.1 Genbank gene 69504 70127 . + . ID=gene-NDY25_22665;Name=NDY25_22665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22665 CP098605.1 GeneMarkS-2+ CDS 69504 70127 . + 0 ID=cds-UUF04786.1;Parent=gene-NDY25_22665;Dbxref=NCBI_GP:UUF04786.1;Name=UUF04786.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22665;product=hypothetical protein;protein_id=UUF04786.1;transl_table=11 CP098605.1 Genbank gene 70124 70345 . + . ID=gene-NDY25_22670;Name=NDY25_22670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22670 CP098605.1 Protein Homology CDS 70124 70345 . + 0 ID=cds-UUF04787.1;Parent=gene-NDY25_22670;Dbxref=NCBI_GP:UUF04787.1;Name=UUF04787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010890114.1;locus_tag=NDY25_22670;product=DUF2688 domain-containing protein;protein_id=UUF04787.1;transl_table=11 CP098605.1 Genbank gene 70350 70592 . + . ID=gene-NDY25_22675;Name=NDY25_22675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22675 CP098605.1 GeneMarkS-2+ CDS 70350 70592 . + 0 ID=cds-UUF04788.1;Parent=gene-NDY25_22675;Dbxref=NCBI_GP:UUF04788.1;Name=UUF04788.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22675;product=hypothetical protein;protein_id=UUF04788.1;transl_table=11 CP098605.1 Genbank gene 70717 71028 . + . ID=gene-NDY25_22680;Name=NDY25_22680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22680 CP098605.1 Protein Homology CDS 70717 71028 . + 0 ID=cds-UUF04789.1;Parent=gene-NDY25_22680;Dbxref=NCBI_GP:UUF04789.1;Name=UUF04789.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF027824.2;locus_tag=NDY25_22680;product=transcriptional regulator KorA;protein_id=UUF04789.1;transl_table=11 CP098605.1 Genbank gene 71021 71209 . + . ID=gene-NDY25_22685;Name=NDY25_22685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22685 CP098605.1 Protein Homology CDS 71021 71209 . + 0 ID=cds-UUF04790.1;Parent=gene-NDY25_22685;Dbxref=NCBI_GP:UUF04790.1;Name=UUF04790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004861683.1;locus_tag=NDY25_22685;product=antitoxin VbhA family protein;protein_id=UUF04790.1;transl_table=11 CP098605.1 Genbank gene 71230 71637 . + . ID=gene-NDY25_22690;Name=NDY25_22690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22690 CP098605.1 GeneMarkS-2+ CDS 71230 71637 . + 0 ID=cds-UUF04791.1;Parent=gene-NDY25_22690;Dbxref=NCBI_GP:UUF04791.1;Name=UUF04791.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22690;product=hypothetical protein;protein_id=UUF04791.1;transl_table=11 CP098605.1 Genbank gene 71852 72154 . + . ID=gene-NDY25_22695;Name=NDY25_22695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22695 CP098605.1 Protein Homology CDS 71852 72154 . + 0 ID=cds-UUF04792.1;Parent=gene-NDY25_22695;Dbxref=NCBI_GP:UUF04792.1;Name=UUF04792.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014691.2;locus_tag=NDY25_22695;product=Fic family protein;protein_id=UUF04792.1;transl_table=11 CP098605.1 Genbank gene 72151 72567 . + . ID=gene-NDY25_22700;Name=NDY25_22700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22700 CP098605.1 GeneMarkS-2+ CDS 72151 72567 . + 0 ID=cds-UUF04793.1;Parent=gene-NDY25_22700;Dbxref=NCBI_GP:UUF04793.1;Name=UUF04793.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22700;product=hypothetical protein;protein_id=UUF04793.1;transl_table=11 CP098605.1 Genbank gene 72643 73011 . + . ID=gene-NDY25_22705;Name=NDY25_22705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22705 CP098605.1 Protein Homology CDS 72643 73011 . + 0 ID=cds-UUF04794.1;Parent=gene-NDY25_22705;Dbxref=NCBI_GP:UUF04794.1;Name=UUF04794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113474.1;locus_tag=NDY25_22705;product=hypothetical protein;protein_id=UUF04794.1;transl_table=11 CP098605.1 Genbank gene 73724 74215 . + . ID=gene-NDY25_22710;Name=NDY25_22710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22710 CP098605.1 GeneMarkS-2+ CDS 73724 74215 . + 0 ID=cds-UUF04795.1;Parent=gene-NDY25_22710;Dbxref=NCBI_GP:UUF04795.1;Name=UUF04795.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22710;product=hypothetical protein;protein_id=UUF04795.1;transl_table=11 CP098605.1 Genbank gene 74230 74664 . + . ID=gene-NDY25_22715;Name=NDY25_22715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22715 CP098605.1 Protein Homology CDS 74230 74664 . + 0 ID=cds-UUF04796.1;Parent=gene-NDY25_22715;Dbxref=NCBI_GP:UUF04796.1;Name=UUF04796.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015205.2;locus_tag=NDY25_22715;product=antirestriction protein;protein_id=UUF04796.1;transl_table=11 CP098605.1 Genbank gene 74725 74982 . + . ID=gene-NDY25_22720;Name=NDY25_22720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22720 CP098605.1 GeneMarkS-2+ CDS 74725 74982 . + 0 ID=cds-UUF04797.1;Parent=gene-NDY25_22720;Dbxref=NCBI_GP:UUF04797.1;Name=UUF04797.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22720;product=hypothetical protein;protein_id=UUF04797.1;transl_table=11 CP098605.1 Genbank gene 75080 75304 . - . ID=gene-NDY25_22725;Name=NDY25_22725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22725 CP098605.1 GeneMarkS-2+ CDS 75080 75304 . - 0 ID=cds-UUF04798.1;Parent=gene-NDY25_22725;Dbxref=NCBI_GP:UUF04798.1;Name=UUF04798.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22725;product=hypothetical protein;protein_id=UUF04798.1;transl_table=11 CP098605.1 Genbank gene 75474 76169 . - . ID=gene-NDY25_22730;Name=NDY25_22730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22730 CP098605.1 Protein Homology CDS 75474 76169 . - 0 ID=cds-UUF04799.1;Parent=gene-NDY25_22730;Dbxref=NCBI_GP:UUF04799.1;Name=UUF04799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017154898.1;locus_tag=NDY25_22730;product=hypothetical protein;protein_id=UUF04799.1;transl_table=11 CP098605.1 Genbank pseudogene 76179 76624 . - . ID=gene-NDY25_22735;Name=NDY25_22735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22735;pseudo=true CP098605.1 Protein Homology CDS 76179 76624 . - 0 ID=cds-NDY25_22735;Parent=gene-NDY25_22735;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010368869.1;locus_tag=NDY25_22735;product=hypothetical protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 77007 77345 . + . ID=gene-NDY25_22740;Name=NDY25_22740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22740 CP098605.1 GeneMarkS-2+ CDS 77007 77345 . + 0 ID=cds-UUF04800.1;Parent=gene-NDY25_22740;Dbxref=NCBI_GP:UUF04800.1;Name=UUF04800.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22740;product=hypothetical protein;protein_id=UUF04800.1;transl_table=11 CP098605.1 Genbank gene 77349 78965 . + . ID=gene-NDY25_22745;Name=NDY25_22745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22745 CP098605.1 Protein Homology CDS 77349 78965 . + 0 ID=cds-UUF04801.1;Parent=gene-NDY25_22745;Dbxref=NCBI_GP:UUF04801.1;Name=UUF04801.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021897.2;locus_tag=NDY25_22745;product=type IV secretion system DNA-binding domain-containing protein;protein_id=UUF04801.1;transl_table=11 CP098605.1 Genbank gene 78892 79155 . + . ID=gene-NDY25_22750;Name=NDY25_22750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22750 CP098605.1 Protein Homology CDS 78892 79155 . + 0 ID=cds-UUF04802.1;Parent=gene-NDY25_22750;Dbxref=NCBI_GP:UUF04802.1;Name=UUF04802.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020332.2;locus_tag=NDY25_22750;product=relaxase domain-containing protein;protein_id=UUF04802.1;transl_table=11 CP098605.1 Genbank pseudogene 79152 80289 . + . ID=gene-NDY25_22755;Name=NDY25_22755;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22755;pseudo=true CP098605.1 Protein Homology CDS 79152 80289 . + 0 ID=cds-NDY25_22755;Parent=gene-NDY25_22755;Note=frameshifted;Ontology_term=GO:0006259,GO:0004386;gbkey=CDS;go_function=helicase activity|0004386||IEA;go_process=DNA metabolic process|0006259||IEA;inference=COORDINATES: protein motif:HMM:NF020332.2;locus_tag=NDY25_22755;product=conjugative relaxase;pseudo=true;transl_table=11 CP098605.1 Genbank gene 80178 81125 . + . ID=gene-NDY25_22760;Name=NDY25_22760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22760 CP098605.1 Protein Homology CDS 80178 81125 . + 0 ID=cds-UUF04803.1;Parent=gene-NDY25_22760;Dbxref=NCBI_GP:UUF04803.1;Name=UUF04803.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024991.2;locus_tag=NDY25_22760;product=AAA family ATPase;protein_id=UUF04803.1;transl_table=11 CP098605.1 Genbank gene 81122 81709 . + . ID=gene-NDY25_22765;Name=NDY25_22765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22765 CP098605.1 Protein Homology CDS 81122 81709 . + 0 ID=cds-UUF04804.1;Parent=gene-NDY25_22765;Dbxref=NCBI_GP:UUF04804.1;Name=UUF04804.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013601.2;locus_tag=NDY25_22765;product=ATP-binding domain-containing protein;protein_id=UUF04804.1;transl_table=11 CP098605.1 Genbank gene 81753 82028 . - . ID=gene-NDY25_22770;Name=NDY25_22770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22770 CP098605.1 GeneMarkS-2+ CDS 81753 82028 . - 0 ID=cds-UUF04805.1;Parent=gene-NDY25_22770;Dbxref=NCBI_GP:UUF04805.1;Name=UUF04805.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22770;product=hypothetical protein;protein_id=UUF04805.1;transl_table=11 CP098605.1 Genbank gene 82685 83113 . + . ID=gene-NDY25_22775;Name=NDY25_22775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22775 CP098605.1 Protein Homology CDS 82685 83113 . + 0 ID=cds-UUF04806.1;Parent=gene-NDY25_22775;Dbxref=NCBI_GP:UUF04806.1;Name=UUF04806.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013122.2;locus_tag=NDY25_22775;product=3'-5' exonuclease;protein_id=UUF04806.1;transl_table=11 CP098605.1 Genbank gene 83724 84608 . - . ID=gene-NDY25_22780;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=NDY25_22780 CP098605.1 Protein Homology CDS 83724 84608 . - 0 ID=cds-UUF04807.1;Parent=gene-NDY25_22780;Dbxref=NCBI_GP:UUF04807.1;Name=UUF04807.1;gbkey=CDS;gene=tadA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995704.1;locus_tag=NDY25_22780;product=Flp pilus assembly complex ATPase component TadA;protein_id=UUF04807.1;transl_table=11 CP098605.1 Genbank gene 84715 84972 . - . ID=gene-NDY25_22785;Name=NDY25_22785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22785 CP098605.1 Protein Homology CDS 84715 84972 . - 0 ID=cds-UUF04861.1;Parent=gene-NDY25_22785;Dbxref=NCBI_GP:UUF04861.1;Name=UUF04861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005995706.1;locus_tag=NDY25_22785;product=helix-turn-helix domain-containing protein;protein_id=UUF04861.1;transl_table=11 CP098605.1 Genbank gene 85156 85494 . + . ID=gene-NDY25_22790;Name=NDY25_22790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22790 CP098605.1 Protein Homology CDS 85156 85494 . + 0 ID=cds-UUF04808.1;Parent=gene-NDY25_22790;Dbxref=NCBI_GP:UUF04808.1;Name=UUF04808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010378701.1;locus_tag=NDY25_22790;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=UUF04808.1;transl_table=11 CP098605.1 Genbank pseudogene 85491 85770 . + . ID=gene-NDY25_22795;Name=NDY25_22795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22795;pseudo=true CP098605.1 Protein Homology CDS 85491 85770 . + 0 ID=cds-NDY25_22795;Parent=gene-NDY25_22795;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238166.1;locus_tag=NDY25_22795;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 86451 87272 . - . ID=gene-NDY25_22800;Name=NDY25_22800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22800 CP098605.1 Protein Homology CDS 86451 87272 . - 0 ID=cds-UUF04809.1;Parent=gene-NDY25_22800;Dbxref=NCBI_GP:UUF04809.1;Name=UUF04809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017113814.1;locus_tag=NDY25_22800;product=hypothetical protein;protein_id=UUF04809.1;transl_table=11 CP098605.1 Genbank gene 87782 88174 . - . ID=gene-NDY25_22805;Name=NDY25_22805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22805 CP098605.1 Protein Homology CDS 87782 88174 . - 0 ID=cds-UUF04810.1;Parent=gene-NDY25_22805;Dbxref=NCBI_GP:UUF04810.1;Name=UUF04810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007974941.1;locus_tag=NDY25_22805;product=hypothetical protein;protein_id=UUF04810.1;transl_table=11 CP098605.1 Genbank pseudogene 88270 88808 . - . ID=gene-NDY25_22810;Name=NDY25_22810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=NDY25_22810;pseudo=true CP098605.1 Protein Homology CDS 88270 88808 . - 0 ID=cds-NDY25_22810;Parent=gene-NDY25_22810;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238169.1;locus_tag=NDY25_22810;product=plasmid pRiA4b ORF-3 family protein;pseudo=true;transl_table=11 CP098605.1 Genbank gene 88841 89332 . - . ID=gene-NDY25_22815;Name=NDY25_22815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22815 CP098605.1 Protein Homology CDS 88841 89332 . - 0 ID=cds-UUF04811.1;Parent=gene-NDY25_22815;Dbxref=NCBI_GP:UUF04811.1;Name=UUF04811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006451398.1;locus_tag=NDY25_22815;product=hypothetical protein;protein_id=UUF04811.1;transl_table=11 CP098605.1 Genbank gene 89329 90957 . - . ID=gene-NDY25_22820;Name=NDY25_22820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22820 CP098605.1 Protein Homology CDS 89329 90957 . - 0 ID=cds-UUF04812.1;Parent=gene-NDY25_22820;Dbxref=NCBI_GP:UUF04812.1;Name=UUF04812.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: protein motif:HMM:NF014581.2;locus_tag=NDY25_22820;product=type IV secretory system conjugative DNA transfer family protein;protein_id=UUF04812.1;transl_table=11 CP098605.1 Genbank gene 90954 91385 . - . ID=gene-NDY25_22825;Name=NDY25_22825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22825 CP098605.1 GeneMarkS-2+ CDS 90954 91385 . - 0 ID=cds-UUF04813.1;Parent=gene-NDY25_22825;Dbxref=NCBI_GP:UUF04813.1;Name=UUF04813.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=NDY25_22825;product=hypothetical protein;protein_id=UUF04813.1;transl_table=11 CP098605.1 Genbank gene 91390 92199 . - . ID=gene-NDY25_22830;Name=NDY25_22830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22830 CP098605.1 Protein Homology CDS 91390 92199 . - 0 ID=cds-UUF04814.1;Parent=gene-NDY25_22830;Dbxref=NCBI_GP:UUF04814.1;Name=UUF04814.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023271.2;locus_tag=NDY25_22830;product=DUF3363 domain-containing protein;protein_id=UUF04814.1;transl_table=11 CP098605.1 Genbank gene 92196 94343 . - . ID=gene-NDY25_22245;Name=NDY25_22245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=NDY25_22245 CP098605.1 Protein Homology CDS 92196 94343 . - 0 ID=cds-UUF04815.1;Parent=gene-NDY25_22245;Dbxref=NCBI_GP:UUF04815.1;Name=UUF04815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019238172.1;locus_tag=NDY25_22245;product=DUF3363 domain-containing protein;protein_id=UUF04815.1;transl_table=11 ###