locus-tag class description NDY24_00010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_00020 PF00034 Cytochrome c NDY24_00060 PF00672 HAMP domain NDY24_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_00060 PF00512 His Kinase A (phospho-acceptor) domain NDY24_00060 PF01627 Hpt domain NDY24_00060 PF00072 Response regulator receiver domain NDY24_00060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDY24_00065 PF00575 S1 RNA binding domain NDY24_00065 PF17674 HHH domain NDY24_00065 PF09371 Tex-like protein N-terminal domain NDY24_00065 PF16921 Tex protein YqgF-like domain NDY24_00090 PF00561 alpha/beta hydrolase fold NDY24_00100 PF01066 CDP-alcohol phosphatidyltransferase NDY24_00120 PF03618 Kinase/pyrophosphorylase NDY24_00130 PF05552 Conserved TM helix NDY24_00130 PF00924 Mechanosensitive ion channel NDY24_00135 PF00929 Exonuclease NDY24_00140 PF14437 MafB19-like deaminase NDY24_00145 PF01325 Iron dependent repressor, N-terminal DNA binding domain NDY24_00145 PF02742 Iron dependent repressor, metal binding and dimerisation domain NDY24_00150 PF01566 Natural resistance-associated macrophage protein NDY24_00155 PF00561 alpha/beta hydrolase fold NDY24_00180 PF05977 Transmembrane secretion effector NDY24_00185 PF07969 Amidohydrolase family NDY24_00195 PF00857 Isochorismatase family NDY24_00210 PF00072 Response regulator receiver domain NDY24_00210 PF00196 Bacterial regulatory proteins, luxR family NDY24_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_00225 PF03466 LysR substrate binding domain NDY24_00230 PF03358 NADPH-dependent FMN reductase NDY24_00255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_00255 PF03466 LysR substrate binding domain NDY24_00265 PF03544 Gram-negative bacterial TonB protein C-terminal NDY24_00275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDY24_00280 PF01817 Chorismate mutase type II NDY24_00280 PF00800 Prephenate dehydratase NDY24_00280 PF01842 ACT domain NDY24_00285 PF00266 Aminotransferase class-V NDY24_00290 PF00174 Oxidoreductase molybdopterin binding domain NDY24_00295 PF01794 Ferric reductase like transmembrane component NDY24_00330 PF07969 Amidohydrolase family NDY24_00345 PF17391 Urocanase N-terminal domain NDY24_00345 PF17392 Urocanase C-terminal domain NDY24_00345 PF01175 Urocanase Rossmann-like domain NDY24_00370 PF00521 DNA gyrase/topoisomerase IV, subunit A NDY24_00370 PF03989 DNA gyrase C-terminal domain, beta-propeller NDY24_00375 PF01008 Initiation factor 2 subunit family NDY24_00385 PF00152 tRNA synthetases class II (D, K and N) NDY24_00390 PF12826 Helix-hairpin-helix motif NDY24_00390 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NDY24_00390 PF03120 NAD-dependent DNA ligase OB-fold domain NDY24_00390 PF01653 NAD-dependent DNA ligase adenylation domain NDY24_00390 PF00533 BRCA1 C Terminus (BRCT) domain NDY24_00395 PF00155 Aminotransferase class I and II NDY24_00400 PF04354 ZipA, C-terminal FtsZ-binding domain NDY24_00405 PF02463 RecF/RecN/SMC N terminal domain NDY24_00410 PF01281 Ribosomal protein L9, N-terminal domain NDY24_00410 PF03948 Ribosomal protein L9, C-terminal domain NDY24_00415 PF01084 Ribosomal protein S18 NDY24_00420 PF01250 Ribosomal protein S6 NDY24_00425 PF01521 Iron-sulphur cluster biosynthesis NDY24_00430 PF00152 tRNA synthetases class II (D, K and N) NDY24_00430 PF01336 OB-fold nucleic acid binding domain NDY24_00445 PF04299 Putative FMN-binding domain NDY24_00455 PF06052 3-hydroxyanthranilic acid dioxygenase NDY24_00465 PF00266 Aminotransferase class-V NDY24_00470 PF01494 FAD binding domain NDY24_00475 PF00929 Exonuclease NDY24_00475 PF08411 Exonuclease C-terminal NDY24_00500 PF01513 ATP-NAD kinase NDY24_00505 PF01170 Putative RNA methylase family UPF0020 NDY24_00505 PF02926 THUMP domain NDY24_00505 PF10672 S-adenosylmethionine-dependent methyltransferase NDY24_00515 PF16326 ABC transporter C-terminal domain NDY24_00515 PF00005 ABC transporter NDY24_00515 PF12848 ABC transporter NDY24_00550 PF00581 Rhodanese-like domain NDY24_00555 PF00293 NUDIX domain NDY24_00560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDY24_00560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDY24_00565 PF00378 Enoyl-CoA hydratase/isomerase NDY24_00575 PF10576 Iron-sulfur binding domain of endonuclease III NDY24_00575 PF00633 Helix-hairpin-helix motif NDY24_00575 PF00730 HhH-GPD superfamily base excision DNA repair protein NDY24_00580 PF00916 Sulfate permease family NDY24_00580 PF01740 STAS domain NDY24_00585 PF00484 Carbonic anhydrase NDY24_00600 PF12849 PBP superfamily domain NDY24_00605 PF12849 PBP superfamily domain NDY24_00620 PF00005 ABC transporter NDY24_00625 PF01895 PhoU domain NDY24_00635 PF00929 Exonuclease NDY24_00640 PF00990 Diguanylate cyclase, GGDEF domain NDY24_00645 PF00588 SpoU rRNA Methylase family NDY24_00645 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDY24_00655 PF08206 Ribonuclease B OB domain NDY24_00655 PF08461 Ribonuclease R winged-helix domain NDY24_00655 PF17876 Cold shock domain NDY24_00655 PF00575 S1 RNA binding domain NDY24_00655 PF00773 RNB domain NDY24_00670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDY24_00670 PF02770 Acyl-CoA dehydrogenase, middle domain NDY24_00670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDY24_00675 PF01209 ubiE/COQ5 methyltransferase family NDY24_00680 PF00809 Pterin binding enzyme NDY24_00680 PF02574 Homocysteine S-methyltransferase NDY24_00685 PF02607 B12 binding domain NDY24_00685 PF02965 Vitamin B12 dependent methionine synthase, activation domain NDY24_00685 PF00809 Pterin binding enzyme NDY24_00685 PF02574 Homocysteine S-methyltransferase NDY24_00685 PF02310 B12 binding domain NDY24_00695 PF00294 pfkB family carbohydrate kinase NDY24_00700 PF07690 Major Facilitator Superfamily NDY24_00705 PF00356 Bacterial regulatory proteins, lacI family NDY24_00720 PF04102 SlyX NDY24_00725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDY24_00725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDY24_00725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDY24_00730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDY24_00730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDY24_00735 PF00255 Glutathione peroxidase NDY24_00745 PF00392 Bacterial regulatory proteins, gntR family NDY24_00750 PF00005 ABC transporter NDY24_00775 PF00206 Lyase NDY24_00775 PF10415 Fumarase C C-terminus NDY24_00780 PF00571 CBS domain NDY24_00780 PF03471 Transporter associated domain NDY24_00780 PF01595 Cyclin M transmembrane N-terminal domain NDY24_00795 PF08007 Cupin superfamily protein NDY24_00815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDY24_00815 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_00825 PF01205 Uncharacterized protein family UPF0029 NDY24_00830 PF02016 LD-carboxypeptidase N-terminal domain NDY24_00830 PF17676 LD-carboxypeptidase C-terminal domain NDY24_00835 PF00005 ABC transporter NDY24_00835 PF00664 ABC transporter transmembrane region NDY24_00845 PF00664 ABC transporter transmembrane region NDY24_00845 PF03412 Peptidase C39 family NDY24_00845 PF00005 ABC transporter NDY24_00865 PF02153 Prephenate dehydrogenase NDY24_00865 PF01817 Chorismate mutase type II NDY24_00875 PF01556 DnaJ C terminal domain NDY24_00875 PF00684 DnaJ central domain NDY24_00875 PF00226 DnaJ domain NDY24_00880 PF00012 Hsp70 protein NDY24_00890 PF01628 HrcA protein C terminal domain NDY24_00890 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NDY24_00895 PF02463 RecF/RecN/SMC N terminal domain NDY24_00900 PF01475 Ferric uptake regulator family NDY24_00905 PF04355 SmpA / OmlA family NDY24_00920 PF01668 SmpB protein NDY24_00925 PF00082 Subtilase family NDY24_01035 PF05567 Neisseria PilC beta-propeller domain NDY24_01065 PF00114 Pilin (bacterial filament) NDY24_01065 PF07963 Prokaryotic N-terminal methylation motif NDY24_01070 PF11892 Domain of unknown function (DUF3412) NDY24_01070 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NDY24_01070 PF03641 Possible lysine decarboxylase NDY24_01090 PF00462 Glutaredoxin NDY24_01095 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDY24_01095 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDY24_01105 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NDY24_01105 PF02222 ATP-grasp domain NDY24_01110 PF00731 AIR carboxylase NDY24_01130 PF01138 3' exoribonuclease family, domain 1 NDY24_01130 PF03725 3' exoribonuclease family, domain 2 NDY24_01130 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NDY24_01130 PF00013 KH domain NDY24_01130 PF00575 S1 RNA binding domain NDY24_01135 PF00312 Ribosomal protein S15 NDY24_01140 PF09157 Pseudouridine synthase II TruB, C-terminal NDY24_01140 PF16198 tRNA pseudouridylate synthase B C-terminal domain NDY24_01140 PF01509 TruB family pseudouridylate synthase (N terminal domain) NDY24_01145 PF02033 Ribosome-binding factor A NDY24_01150 PF00009 Elongation factor Tu GTP binding domain NDY24_01150 PF11987 Translation-initiation factor 2 NDY24_01150 PF08364 Bacterial translation initiation factor IF-2 associated region NDY24_01150 PF04760 Translation initiation factor IF-2, N-terminal region NDY24_01155 PF08529 NusA N-terminal domain NDY24_01155 PF13184 NusA-like KH domain NDY24_01155 PF00575 S1 RNA binding domain NDY24_01160 PF02576 RimP N-terminal domain NDY24_01160 PF17384 RimP C-terminal SH3 domain NDY24_01170 PF00361 Proton-conducting membrane transporter NDY24_01175 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NDY24_01175 PF00361 Proton-conducting membrane transporter NDY24_01180 PF00361 Proton-conducting membrane transporter NDY24_01180 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDY24_01185 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDY24_01190 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NDY24_01195 PF12838 4Fe-4S dicluster domain NDY24_01200 PF00146 NADH dehydrogenase NDY24_01205 PF00384 Molybdopterin oxidoreductase NDY24_01205 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal NDY24_01205 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NDY24_01210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NDY24_01210 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NDY24_01210 PF10531 SLBB domain NDY24_01220 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDY24_01225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NDY24_01230 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NDY24_01235 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NDY24_01250 PF00121 Triosephosphate isomerase NDY24_01255 PF00106 short chain dehydrogenase NDY24_01270 PF00563 EAL domain NDY24_01270 PF00990 Diguanylate cyclase, GGDEF domain NDY24_01270 PF03707 Bacterial signalling protein N terminal repeat NDY24_01285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDY24_01285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDY24_01285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDY24_01285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDY24_01290 PF01039 Carboxyl transferase domain NDY24_01290 PF17848 Acetyl-coA carboxylase zinc finger domain NDY24_01295 PF00290 Tryptophan synthase alpha chain NDY24_01305 PF00291 Pyridoxal-phosphate dependent enzyme NDY24_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_01310 PF03466 LysR substrate binding domain NDY24_01315 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NDY24_01320 PF01416 tRNA pseudouridine synthase NDY24_01335 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDY24_01335 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDY24_01340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDY24_01340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDY24_01345 PF01264 Chorismate synthase NDY24_01355 PF02630 SCO1/SenC NDY24_01370 PF05872 Bacterial protein of unknown function (DUF853) NDY24_01380 PF00293 NUDIX domain NDY24_01400 PF04055 Radical SAM superfamily NDY24_01400 PF18693 TRAM domain NDY24_01400 PF00919 Uncharacterized protein family UPF0004 NDY24_01405 PF01738 Dienelactone hydrolase family NDY24_01425 PF00692 dUTPase NDY24_01430 PF10609 NUBPL iron-transfer P-loop NTPase NDY24_01435 PF00593 TonB dependent receptor NDY24_01435 PF07715 TonB-dependent Receptor Plug Domain NDY24_01450 PF01431 Peptidase family M13 NDY24_01450 PF05649 Peptidase family M13 NDY24_01455 PF05649 Peptidase family M13 NDY24_01455 PF01431 Peptidase family M13 NDY24_01475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDY24_01475 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_01485 PF04235 Protein of unknown function (DUF418) NDY24_01490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDY24_01500 PF00877 NlpC/P60 family NDY24_01525 PF00158 Sigma-54 interaction domain NDY24_01525 PF02954 Bacterial regulatory protein, Fis family NDY24_01525 PF00072 Response regulator receiver domain NDY24_01530 PF00512 His Kinase A (phospho-acceptor) domain NDY24_01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_01545 PF00375 Sodium:dicarboxylate symporter family NDY24_01550 PF00245 Alkaline phosphatase NDY24_01555 PF11734 TilS substrate C-terminal domain NDY24_01555 PF09179 TilS substrate binding domain NDY24_01555 PF01171 PP-loop family NDY24_01560 PF02609 Exonuclease VII small subunit NDY24_01565 PF00348 Polyprenyl synthetase NDY24_01580 PF01523 Putative modulator of DNA gyrase NDY24_01585 PF04751 Protein of unknown function (DUF615) NDY24_01590 PF01523 Putative modulator of DNA gyrase NDY24_01600 PF13116 Protein of unknown function NDY24_01600 PF13502 AsmA-like C-terminal region NDY24_01605 PF00575 S1 RNA binding domain NDY24_01605 PF10150 Ribonuclease E/G family NDY24_01610 PF02545 Maf-like protein NDY24_01625 PF02590 Predicted SPOUT methyltransferase NDY24_01645 PF01467 Cytidylyltransferase-like NDY24_01660 PF00133 tRNA synthetases class I (I, L, M and V) NDY24_01660 PF08264 Anticodon-binding domain of tRNA NDY24_01660 PF13603 Leucyl-tRNA synthetase, Domain 2 NDY24_01670 PF00085 Thioredoxin NDY24_01680 PF04070 Domain of unknown function (DUF378) NDY24_01695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_01695 PF03466 LysR substrate binding domain NDY24_01720 PF00664 ABC transporter transmembrane region NDY24_01720 PF00005 ABC transporter NDY24_01730 PF00999 Sodium/hydrogen exchanger family NDY24_01735 PF00144 Beta-lactamase NDY24_01740 PF03737 Aldolase/RraA NDY24_01755 PF00990 Diguanylate cyclase, GGDEF domain NDY24_01760 PF01479 S4 domain NDY24_01760 PF00849 RNA pseudouridylate synthase NDY24_01765 PF00563 EAL domain NDY24_01765 PF00990 Diguanylate cyclase, GGDEF domain NDY24_01765 PF08448 PAS fold NDY24_01770 PF03880 DbpA RNA binding domain NDY24_01770 PF00270 DEAD/DEAH box helicase NDY24_01770 PF00271 Helicase conserved C-terminal domain NDY24_01775 PF08281 Sigma-70, region 4 NDY24_01775 PF04542 Sigma-70 region 2 NDY24_01820 PF02805 Metal binding domain of Ada NDY24_01820 PF06029 AlkA N-terminal domain NDY24_01820 PF12833 Helix-turn-helix domain NDY24_01820 PF00730 HhH-GPD superfamily base excision DNA repair protein NDY24_01825 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDY24_01825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDY24_01835 PF00654 Voltage gated chloride channel NDY24_01850 PF00593 TonB dependent receptor NDY24_01850 PF07715 TonB-dependent Receptor Plug Domain NDY24_01870 PF00082 Subtilase family NDY24_01870 PF01483 Proprotein convertase P-domain NDY24_01890 PF00248 Aldo/keto reductase family NDY24_01895 PF07690 Major Facilitator Superfamily NDY24_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_01900 PF03466 LysR substrate binding domain NDY24_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_01920 PF03466 LysR substrate binding domain NDY24_01930 PF00248 Aldo/keto reductase family NDY24_01935 PF16859 Tetracyclin repressor-like, C-terminal domain NDY24_01935 PF00440 Bacterial regulatory proteins, tetR family NDY24_01945 PF00873 AcrB/AcrD/AcrF family NDY24_01950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_01950 PF00529 HlyD membrane-fusion protein of T1SS NDY24_01960 PF01475 Ferric uptake regulator family NDY24_01965 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDY24_01990 PF06123 Inner membrane protein CreD NDY24_02000 PF00486 Transcriptional regulatory protein, C terminal NDY24_02000 PF00072 Response regulator receiver domain NDY24_02010 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NDY24_02020 PF02559 CarD-like/TRCF domain NDY24_02020 PF00270 DEAD/DEAH box helicase NDY24_02020 PF00271 Helicase conserved C-terminal domain NDY24_02020 PF03461 TRCF domain NDY24_02020 PF17757 UvrB interaction domain NDY24_02075 PF01584 CheW-like domain NDY24_02075 PF09078 CheY binding NDY24_02075 PF02895 Signal transducing histidine kinase, homodimeric domain NDY24_02075 PF01627 Hpt domain NDY24_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_02080 PF00672 HAMP domain NDY24_02080 PF02203 Tar ligand binding domain homologue NDY24_02080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_02090 PF13426 PAS domain NDY24_02090 PF00990 Diguanylate cyclase, GGDEF domain NDY24_02090 PF00563 EAL domain NDY24_02095 PF03705 CheR methyltransferase, all-alpha domain NDY24_02095 PF01739 CheR methyltransferase, SAM binding domain NDY24_02100 PF01339 CheB methylesterase NDY24_02100 PF00072 Response regulator receiver domain NDY24_02105 PF13091 PLD-like domain NDY24_02110 PF05649 Peptidase family M13 NDY24_02110 PF01431 Peptidase family M13 NDY24_02120 PF00300 Histidine phosphatase superfamily (branch 1) NDY24_02130 PF05726 Pirin C-terminal cupin domain NDY24_02130 PF02678 Pirin NDY24_02155 PF04328 Selenoprotein, putative NDY24_02160 PF13419 Haloacid dehalogenase-like hydrolase NDY24_02185 PF12804 MobA-like NTP transferase domain NDY24_02190 PF13478 XdhC Rossmann domain NDY24_02190 PF02625 XdhC and CoxI family NDY24_02195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NDY24_02195 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NDY24_02200 PF00941 FAD binding domain in molybdopterin dehydrogenase NDY24_02200 PF03450 CO dehydrogenase flavoprotein C-terminal domain NDY24_02205 PF10518 TAT (twin-arginine translocation) pathway signal sequence NDY24_02205 PF01799 [2Fe-2S] binding domain NDY24_02205 PF00111 2Fe-2S iron-sulfur cluster binding domain NDY24_02210 PF00563 EAL domain NDY24_02210 PF00360 Phytochrome region NDY24_02210 PF00990 Diguanylate cyclase, GGDEF domain NDY24_02210 PF01590 GAF domain NDY24_02215 PF04052 TolB amino-terminal domain NDY24_02215 PF07676 WD40-like Beta Propeller Repeat NDY24_02220 PF07715 TonB-dependent Receptor Plug Domain NDY24_02220 PF00593 TonB dependent receptor NDY24_02225 PF00436 Single-strand binding protein family NDY24_02230 PF00348 Polyprenyl synthetase NDY24_02235 PF08245 Mur ligase middle domain NDY24_02250 PF00696 Amino acid kinase family NDY24_02250 PF01842 ACT domain NDY24_02270 PF02566 OsmC-like protein NDY24_02275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDY24_02275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDY24_02280 PF03652 Holliday junction resolvase NDY24_02285 PF02622 Uncharacterized ACR, COG1678 NDY24_02290 PF13302 Acetyltransferase (GNAT) domain NDY24_02290 PF13673 Acetyltransferase (GNAT) domain NDY24_02290 PF00117 Glutamine amidotransferase class-I NDY24_02290 PF00958 GMP synthase C terminal domain NDY24_02290 PF03352 Methyladenine glycosylase NDY24_02300 PF00437 Type II/IV secretion system protein NDY24_02305 PF00437 Type II/IV secretion system protein NDY24_02315 PF03807 NADP oxidoreductase coenzyme F420-dependent NDY24_02315 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDY24_02350 PF02082 Transcriptional regulator NDY24_02355 PF01458 Uncharacterized protein family (UPF0051) NDY24_02360 PF00005 ABC transporter NDY24_02365 PF01458 Uncharacterized protein family (UPF0051) NDY24_02380 PF00355 Rieske [2Fe-2S] domain NDY24_02385 PF07715 TonB-dependent Receptor Plug Domain NDY24_02385 PF00593 TonB dependent receptor NDY24_02390 PF13640 2OG-Fe(II) oxygenase superfamily NDY24_02390 PF18331 PKHD-type hydroxylase C-terminal domain NDY24_02415 PF02424 ApbE family NDY24_02435 PF07687 Peptidase dimerisation domain NDY24_02435 PF01546 Peptidase family M20/M25/M40 NDY24_02445 PF01636 Phosphotransferase enzyme family NDY24_02460 PF02253 Phospholipase A1 NDY24_02470 PF00484 Carbonic anhydrase NDY24_02480 PF05681 Fumarate hydratase (Fumerase) NDY24_02480 PF05683 Fumarase C-terminus NDY24_02485 PF00005 ABC transporter NDY24_02490 PF00970 Oxidoreductase FAD-binding domain NDY24_02490 PF00175 Oxidoreductase NAD-binding domain NDY24_02495 PF00255 Glutathione peroxidase NDY24_02500 PF01432 Peptidase family M3 NDY24_02505 PF12802 MarR family NDY24_02530 PF00854 POT family NDY24_02540 PF14310 Fibronectin type III-like domain NDY24_02540 PF01915 Glycosyl hydrolase family 3 C-terminal domain NDY24_02540 PF00933 Glycosyl hydrolase family 3 N terminal domain NDY24_02555 PF07690 Major Facilitator Superfamily NDY24_02560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_02560 PF00529 HlyD membrane-fusion protein of T1SS NDY24_02565 PF02321 Outer membrane efflux protein NDY24_02580 PF00521 DNA gyrase/topoisomerase IV, subunit A NDY24_02580 PF03989 DNA gyrase C-terminal domain, beta-propeller NDY24_02585 PF05724 Thiopurine S-methyltransferase (TPMT) NDY24_02590 PF00210 Ferritin-like domain NDY24_02595 PF01804 Penicillin amidase NDY24_02600 PF00593 TonB dependent receptor NDY24_02600 PF07715 TonB-dependent Receptor Plug Domain NDY24_02610 PF13537 Glutamine amidotransferase domain NDY24_02610 PF00733 Asparagine synthase NDY24_02620 PF01546 Peptidase family M20/M25/M40 NDY24_02620 PF07687 Peptidase dimerisation domain NDY24_02625 PF03960 ArsC family NDY24_02635 PF00132 Bacterial transferase hexapeptide (six repeats) NDY24_02635 PF14602 Hexapeptide repeat of succinyl-transferase NDY24_02635 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NDY24_02640 PF01966 HD domain NDY24_02640 PF08335 GlnD PII-uridylyltransferase NDY24_02640 PF01909 Nucleotidyltransferase domain NDY24_02645 PF00557 Metallopeptidase family M24 NDY24_02680 PF00318 Ribosomal protein S2 NDY24_02685 PF00889 Elongation factor TS NDY24_02690 PF00990 Diguanylate cyclase, GGDEF domain NDY24_02690 PF00072 Response regulator receiver domain NDY24_02695 PF00696 Amino acid kinase family NDY24_02700 PF01765 Ribosome recycling factor NDY24_02705 PF01255 Putative undecaprenyl diphosphate synthase NDY24_02715 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NDY24_02715 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NDY24_02715 PF13288 DXP reductoisomerase C-terminal domain NDY24_02720 PF17820 PDZ domain NDY24_02720 PF02163 Peptidase family M50 NDY24_02725 PF07244 Surface antigen variable number repeat NDY24_02725 PF01103 Surface antigen NDY24_02735 PF00132 Bacterial transferase hexapeptide (six repeats) NDY24_02735 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NDY24_02740 PF07977 FabA-like domain NDY24_02745 PF00132 Bacterial transferase hexapeptide (six repeats) NDY24_02745 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NDY24_02750 PF02684 Lipid-A-disaccharide synthetase NDY24_02755 PF01351 Ribonuclease HII NDY24_02760 PF01336 OB-fold nucleic acid binding domain NDY24_02760 PF14579 Helix-hairpin-helix motif NDY24_02760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDY24_02760 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDY24_02760 PF02811 PHP domain NDY24_02765 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NDY24_02775 PF03653 Uncharacterised protein family (UPF0093) NDY24_02795 PF03551 Transcriptional regulator PadR-like family NDY24_02820 PF02592 Putative vitamin uptake transporter NDY24_02825 PF01810 LysE type translocator NDY24_02840 PF02574 Homocysteine S-methyltransferase NDY24_02845 PF00324 Amino acid permease NDY24_02850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDY24_02855 PF00005 ABC transporter NDY24_02855 PF13732 Domain of unknown function (DUF4162) NDY24_02870 PF09334 tRNA synthetases class I (M) NDY24_02870 PF01588 Putative tRNA binding domain NDY24_02880 PF04060 Putative Fe-S cluster NDY24_02895 PF04542 Sigma-70 region 2 NDY24_02895 PF04545 Sigma-70, region 4 NDY24_02945 PF01042 Endoribonuclease L-PSP NDY24_02955 PF03706 Lysylphosphatidylglycerol synthase TM region NDY24_02955 PF09924 Uncharacterised conserved protein (DUF2156) NDY24_02985 PF07690 Major Facilitator Superfamily NDY24_02990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDY24_03005 PF03831 PhnA domain NDY24_03005 PF08274 PhnA Zinc-Ribbon NDY24_03015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDY24_03040 PF04542 Sigma-70 region 2 NDY24_03040 PF08281 Sigma-70, region 4 NDY24_03055 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDY24_03065 PF07043 Protein of unknown function (DUF1328) NDY24_03070 PF01863 Protein of unknown function DUF45 NDY24_03080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDY24_03080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDY24_03085 PF03797 Autotransporter beta-domain NDY24_03085 PF12951 Passenger-associated-transport-repeat NDY24_03085 PF00082 Subtilase family NDY24_03090 PF02803 Thiolase, C-terminal domain NDY24_03090 PF00108 Thiolase, N-terminal domain NDY24_03105 PF00990 Diguanylate cyclase, GGDEF domain NDY24_03105 PF00072 Response regulator receiver domain NDY24_03120 PF04679 ATP dependent DNA ligase C terminal region NDY24_03120 PF01068 ATP dependent DNA ligase domain NDY24_03120 PF04675 DNA ligase N terminus NDY24_03130 PF01068 ATP dependent DNA ligase domain NDY24_03130 PF04675 DNA ligase N terminus NDY24_03130 PF04679 ATP dependent DNA ligase C terminal region NDY24_03135 PF00270 DEAD/DEAH box helicase NDY24_03135 PF08494 DEAD/H associated NDY24_03135 PF00271 Helicase conserved C-terminal domain NDY24_03145 PF01494 FAD binding domain NDY24_03150 PF00313 'Cold-shock' DNA-binding domain NDY24_03155 PF01048 Phosphorylase superfamily NDY24_03160 PF00156 Phosphoribosyl transferase domain NDY24_03170 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NDY24_03175 PF01593 Flavin containing amine oxidoreductase NDY24_03180 PF01323 DSBA-like thioredoxin domain NDY24_03185 PF01928 CYTH domain NDY24_03195 PF05958 tRNA (Uracil-5-)-methyltransferase NDY24_03200 PF00072 Response regulator receiver domain NDY24_03200 PF00486 Transcriptional regulatory protein, C terminal NDY24_03210 PF01926 50S ribosome-binding GTPase NDY24_03210 PF07650 KH domain NDY24_03215 PF00035 Double-stranded RNA binding motif NDY24_03215 PF14622 Ribonuclease-III-like NDY24_03225 PF10502 Signal peptidase, peptidase S26 NDY24_03230 PF00679 Elongation factor G C-terminus NDY24_03230 PF00009 Elongation factor Tu GTP binding domain NDY24_03230 PF03144 Elongation factor Tu domain 2 NDY24_03230 PF06421 GTP-binding protein LepA C-terminus NDY24_03235 PF13180 PDZ domain NDY24_03245 PF04542 Sigma-70 region 2 NDY24_03245 PF08281 Sigma-70, region 4 NDY24_03250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDY24_03250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDY24_03250 PF00378 Enoyl-CoA hydratase/isomerase NDY24_03255 PF00593 TonB dependent receptor NDY24_03255 PF07715 TonB-dependent Receptor Plug Domain NDY24_03260 PF13181 Tetratricopeptide repeat NDY24_03280 PF01545 Cation efflux family NDY24_03285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDY24_03285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDY24_03290 PF00378 Enoyl-CoA hydratase/isomerase NDY24_03290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDY24_03290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDY24_03295 PF00378 Enoyl-CoA hydratase/isomerase NDY24_03305 PF00171 Aldehyde dehydrogenase family NDY24_03310 PF09856 Predicted transcriptional regulator (DUF2083) NDY24_03310 PF06114 IrrE N-terminal-like domain NDY24_03310 PF01381 Helix-turn-helix NDY24_03320 PF07745 Glycosyl hydrolase family 53 NDY24_03325 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NDY24_03325 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NDY24_03325 PF02837 Glycosyl hydrolases family 2, sugar binding domain NDY24_03325 PF16355 Domain of unknown function (DUF4982) NDY24_03325 PF00703 Glycosyl hydrolases family 2 NDY24_03335 PF00155 Aminotransferase class I and II NDY24_03345 PF00266 Aminotransferase class-V NDY24_03355 PF03301 Tryptophan 2,3-dioxygenase NDY24_03360 PF03301 Tryptophan 2,3-dioxygenase NDY24_03365 PF03301 Tryptophan 2,3-dioxygenase NDY24_03375 PF01624 MutS domain I NDY24_03375 PF05188 MutS domain II NDY24_03375 PF05192 MutS domain III NDY24_03375 PF05190 MutS family domain IV NDY24_03375 PF00488 MutS domain V NDY24_03385 PF00141 Peroxidase NDY24_03390 PF01479 S4 domain NDY24_03395 PF01554 MatE NDY24_03400 PF01245 Ribosomal protein L19 NDY24_03405 PF01746 tRNA (Guanine-1)-methyltransferase NDY24_03410 PF01782 RimM N-terminal domain NDY24_03410 PF05239 PRC-barrel domain NDY24_03415 PF00886 Ribosomal protein S16 NDY24_03425 PF03060 Nitronate monooxygenase NDY24_03430 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) NDY24_03440 PF02881 SRP54-type protein, helical bundle domain NDY24_03440 PF00448 SRP54-type protein, GTPase domain NDY24_03440 PF02978 Signal peptide binding domain NDY24_03445 PF01578 Cytochrome C assembly protein NDY24_03450 PF01263 Aldose 1-epimerase NDY24_03475 PF00072 Response regulator receiver domain NDY24_03485 PF01627 Hpt domain NDY24_03485 PF00072 Response regulator receiver domain NDY24_03485 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDY24_03485 PF00512 His Kinase A (phospho-acceptor) domain NDY24_03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_03485 PF00672 HAMP domain NDY24_03490 PF01739 CheR methyltransferase, SAM binding domain NDY24_03490 PF03705 CheR methyltransferase, all-alpha domain NDY24_03495 PF01339 CheB methylesterase NDY24_03495 PF00072 Response regulator receiver domain NDY24_03500 PF00512 His Kinase A (phospho-acceptor) domain NDY24_03500 PF02702 Osmosensitive K+ channel His kinase sensor domain NDY24_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_03500 PF13492 GAF domain NDY24_03500 PF13493 Domain of unknown function (DUF4118) NDY24_03505 PF07237 Protein of unknown function (DUF1428) NDY24_03525 PF07715 TonB-dependent Receptor Plug Domain NDY24_03525 PF00593 TonB dependent receptor NDY24_03535 PF13188 PAS domain NDY24_03535 PF08448 PAS fold NDY24_03535 PF00512 His Kinase A (phospho-acceptor) domain NDY24_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_03535 PF00072 Response regulator receiver domain NDY24_03540 PF17149 Periplasmic sensor domain found in signal transduction proteins NDY24_03540 PF00672 HAMP domain NDY24_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_03540 PF00512 His Kinase A (phospho-acceptor) domain NDY24_03540 PF01627 Hpt domain NDY24_03540 PF00072 Response regulator receiver domain NDY24_03550 PF13581 Histidine kinase-like ATPase domain NDY24_03555 PF01740 STAS domain NDY24_03560 PF01740 STAS domain NDY24_03560 PF08678 Rsbr N terminal NDY24_03565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDY24_03575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_03575 PF00183 Hsp90 protein NDY24_03580 PF12833 Helix-turn-helix domain NDY24_03590 PF05656 Protein of unknown function (DUF805) NDY24_03595 PF18073 Rubredoxin metal binding domain NDY24_03605 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NDY24_03615 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDY24_03620 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDY24_03620 PF06481 COX Aromatic Rich Motif NDY24_03630 PF02401 LytB protein NDY24_03635 PF01252 Signal peptidase (SPase) II NDY24_03640 PF08264 Anticodon-binding domain of tRNA NDY24_03640 PF06827 Zinc finger found in FPG and IleRS NDY24_03640 PF00133 tRNA synthetases class I (I, L, M and V) NDY24_03645 PF06574 FAD synthetase NDY24_03645 PF01687 Riboflavin kinase NDY24_03650 PF03023 Lipid II flippase MurJ NDY24_03655 PF01649 Ribosomal protein S20 NDY24_03660 PF01926 50S ribosome-binding GTPase NDY24_03660 PF01018 GTP1/OBG NDY24_03665 PF01016 Ribosomal L27 protein NDY24_03670 PF00829 Ribosomal prokaryotic L21 protein NDY24_03675 PF17760 UvrA interaction domain NDY24_03675 PF17755 UvrA DNA-binding domain NDY24_03675 PF00005 ABC transporter NDY24_03690 PF00378 Enoyl-CoA hydratase/isomerase NDY24_03715 PF04377 Arginine-tRNA-protein transferase, C terminus NDY24_03715 PF04376 Arginine-tRNA-protein transferase, N terminus NDY24_03780 PF00196 Bacterial regulatory proteins, luxR family NDY24_03780 PF00072 Response regulator receiver domain NDY24_03785 PF07730 Histidine kinase NDY24_03795 PF03775 Septum formation inhibitor MinC, C-terminal domain NDY24_03795 PF05209 Septum formation inhibitor MinC, N-terminal domain NDY24_03805 PF03776 Septum formation topological specificity factor MinE NDY24_03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_03815 PF00512 His Kinase A (phospho-acceptor) domain NDY24_03820 PF00072 Response regulator receiver domain NDY24_03820 PF00486 Transcriptional regulatory protein, C terminal NDY24_03835 PF08019 Phosphoethanolamine transferase EptA/EptB NDY24_03835 PF00884 Sulfatase NDY24_03855 PF07690 Major Facilitator Superfamily NDY24_03860 PF02347 Glycine cleavage system P-protein NDY24_03865 PF00135 Carboxylesterase family NDY24_03870 PF00248 Aldo/keto reductase family NDY24_03880 PF00199 Catalase NDY24_03880 PF06628 Catalase-related immune-responsive NDY24_03880 PF18011 C-terminal domain found in long catalases NDY24_03885 PF02311 AraC-like ligand binding domain NDY24_03885 PF12833 Helix-turn-helix domain NDY24_03895 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NDY24_03895 PF07676 WD40-like Beta Propeller Repeat NDY24_03895 PF00326 Prolyl oligopeptidase family NDY24_03905 PF03169 OPT oligopeptide transporter protein NDY24_03925 PF02811 PHP domain NDY24_03925 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDY24_03925 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDY24_03925 PF14579 Helix-hairpin-helix motif NDY24_03940 PF01726 LexA DNA binding domain NDY24_03940 PF00717 Peptidase S24-like NDY24_03960 PF00328 Histidine phosphatase superfamily (branch 2) NDY24_03975 PF04542 Sigma-70 region 2 NDY24_03975 PF08281 Sigma-70, region 4 NDY24_03980 PF01799 [2Fe-2S] binding domain NDY24_03980 PF00111 2Fe-2S iron-sulfur cluster binding domain NDY24_03985 PF03450 CO dehydrogenase flavoprotein C-terminal domain NDY24_03985 PF00941 FAD binding domain in molybdopterin dehydrogenase NDY24_03990 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NDY24_03990 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NDY24_04005 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_04005 PF00107 Zinc-binding dehydrogenase NDY24_04010 PF14310 Fibronectin type III-like domain NDY24_04010 PF00933 Glycosyl hydrolase family 3 N terminal domain NDY24_04010 PF01915 Glycosyl hydrolase family 3 C-terminal domain NDY24_04020 PF17755 UvrA DNA-binding domain NDY24_04040 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_04050 PF07971 Glycosyl hydrolase family 92 NDY24_04050 PF17678 Glycosyl hydrolase family 92 N-terminal domain NDY24_04070 PF01256 Carbohydrate kinase NDY24_04075 PF13456 Reverse transcriptase-like NDY24_04075 PF00300 Histidine phosphatase superfamily (branch 1) NDY24_04175 PF01555 DNA methylase NDY24_04230 PF02661 Fic/DOC family NDY24_04240 PF02384 N-6 DNA Methylase NDY24_04245 PF01420 Type I restriction modification DNA specificity domain NDY24_04280 PF11838 ERAP1-like C-terminal domain NDY24_04280 PF01433 Peptidase family M1 domain NDY24_04285 PF00709 Adenylosuccinate synthetase NDY24_04295 PF01145 SPFH domain / Band 7 family NDY24_04300 PF12221 Bacterial membrane protein N terminal NDY24_04300 PF01145 SPFH domain / Band 7 family NDY24_04305 PF00072 Response regulator receiver domain NDY24_04310 PF01556 DnaJ C terminal domain NDY24_04310 PF00226 DnaJ domain NDY24_04320 PF08534 Redoxin NDY24_04330 PF00905 Penicillin binding protein transpeptidase domain NDY24_04330 PF00912 Transglycosylase NDY24_04330 PF06832 Penicillin-Binding Protein C-terminus Family NDY24_04400 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NDY24_04405 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NDY24_04420 PF09115 DNA polymerase III, delta subunit, C terminal NDY24_04430 PF04715 Anthranilate synthase component I, N terminal region NDY24_04430 PF00425 chorismate binding enzyme NDY24_04440 PF00550 Phosphopantetheine attachment site NDY24_04450 PF00698 Acyl transferase domain NDY24_04465 PF01783 Ribosomal L32p protein family NDY24_04470 PF02620 Large ribosomal RNA subunit accumulation protein YceD NDY24_04475 PF02545 Maf-like protein NDY24_04490 PF17863 AAA lid domain NDY24_04490 PF07726 ATPase family associated with various cellular activities (AAA) NDY24_04510 PF01230 HIT domain NDY24_04520 PF02575 YbaB/EbfC DNA-binding family NDY24_04525 PF12169 DNA polymerase III subunits gamma and tau domain III NDY24_04525 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NDY24_04525 PF12170 DNA polymerase III tau subunit V interacting with alpha NDY24_04620 PF02391 MoaE protein NDY24_04625 PF02597 ThiS family NDY24_04630 PF01967 MoaC family NDY24_04635 PF06463 Molybdenum Cofactor Synthesis C NDY24_04635 PF04055 Radical SAM superfamily NDY24_04650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NDY24_04670 PF00929 Exonuclease NDY24_04675 PF00075 RNase H NDY24_04685 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDY24_04685 PF00753 Metallo-beta-lactamase superfamily NDY24_04690 PF01476 LysM domain NDY24_04690 PF05257 CHAP domain NDY24_04715 PF00216 Bacterial DNA-binding protein NDY24_04725 PF07724 AAA domain (Cdc48 subfamily) NDY24_04725 PF10431 C-terminal, D2-small domain, of ClpB protein NDY24_04725 PF06689 ClpX C4-type zinc finger NDY24_04730 PF00574 Clp protease NDY24_04735 PF05698 Bacterial trigger factor protein (TF) C-terminus NDY24_04735 PF05697 Bacterial trigger factor protein (TF) NDY24_04745 PF00072 Response regulator receiver domain NDY24_04745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_04745 PF13426 PAS domain NDY24_04780 PF00180 Isocitrate/isopropylmalate dehydrogenase NDY24_04790 PF00462 Glutaredoxin NDY24_04795 PF13181 Tetratricopeptide repeat NDY24_04795 PF01435 Peptidase family M48 NDY24_04800 PF00072 Response regulator receiver domain NDY24_04800 PF00486 Transcriptional regulatory protein, C terminal NDY24_04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_04805 PF00512 His Kinase A (phospho-acceptor) domain NDY24_04805 PF00989 PAS fold NDY24_04805 PF11808 Phosphate regulon sensor protein PhoR NDY24_04810 PF02503 Polyphosphate kinase middle domain NDY24_04810 PF13090 Polyphosphate kinase C-terminal domain 2 NDY24_04810 PF17941 Polyphosphate kinase C-terminal domain 1 NDY24_04810 PF13089 Polyphosphate kinase N-terminal domain NDY24_04815 PF02541 Ppx/GppA phosphatase family NDY24_04820 PF13439 Glycosyltransferase Family 4 NDY24_04820 PF00534 Glycosyl transferases group 1 NDY24_04825 PF01569 PAP2 superfamily NDY24_04830 PF00149 Calcineurin-like phosphoesterase NDY24_04845 PF04305 Protein of unknown function (DUF455) NDY24_04850 PF00156 Phosphoribosyl transferase domain NDY24_04865 PF02875 Mur ligase family, glutamate ligase domain NDY24_04865 PF08245 Mur ligase middle domain NDY24_04875 PF00300 Histidine phosphatase superfamily (branch 1) NDY24_04880 PF10459 Peptidase S46 NDY24_04885 PF04185 Phosphoesterase family NDY24_04885 PF05506 Domain of unknown function (DUF756) NDY24_04895 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_04895 PF00107 Zinc-binding dehydrogenase NDY24_04905 PF00005 ABC transporter NDY24_04905 PF17850 CysA C-terminal regulatory domain NDY24_04905 PF12857 TOBE-like domain NDY24_04910 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_04915 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_04925 PF00155 Aminotransferase class I and II NDY24_04935 PF00849 RNA pseudouridylate synthase NDY24_04945 PF00691 OmpA family NDY24_04945 PF00223 Photosystem I psaA/psaB protein NDY24_04950 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_04950 PF00107 Zinc-binding dehydrogenase NDY24_04955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDY24_04955 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_04975 PF02798 Glutathione S-transferase, N-terminal domain NDY24_04975 PF00043 Glutathione S-transferase, C-terminal domain NDY24_04980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NDY24_04980 PF00056 lactate/malate dehydrogenase, NAD binding domain NDY24_04985 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDY24_04990 PF00679 Elongation factor G C-terminus NDY24_04990 PF00009 Elongation factor Tu GTP binding domain NDY24_04990 PF03144 Elongation factor Tu domain 2 NDY24_05000 PF01425 Amidase NDY24_05010 PF01474 Class-II DAHP synthetase family NDY24_05015 PF02600 Disulfide bond formation protein DsbB NDY24_05020 PF01196 Ribosomal protein L17 NDY24_05025 PF01000 RNA polymerase Rpb3/RpoA insert domain NDY24_05025 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NDY24_05025 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NDY24_05030 PF01479 S4 domain NDY24_05030 PF00163 Ribosomal protein S4/S9 N-terminal domain NDY24_05035 PF00411 Ribosomal protein S11 NDY24_05040 PF00416 Ribosomal protein S13/S18 NDY24_05045 PF00344 SecY translocase NDY24_05050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NDY24_05055 PF00327 Ribosomal protein L30p/L7e NDY24_05060 PF00333 Ribosomal protein S5, N-terminal domain NDY24_05060 PF03719 Ribosomal protein S5, C-terminal domain NDY24_05065 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NDY24_05070 PF00347 Ribosomal protein L6 NDY24_05075 PF00410 Ribosomal protein S8 NDY24_05080 PF00253 Ribosomal protein S14p/S29e NDY24_05085 PF00281 Ribosomal protein L5 NDY24_05085 PF00673 ribosomal L5P family C-terminus NDY24_05090 PF00467 KOW motif NDY24_05090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NDY24_05095 PF00238 Ribosomal protein L14p/L23e NDY24_05100 PF00366 Ribosomal protein S17 NDY24_05105 PF00831 Ribosomal L29 protein NDY24_05110 PF00252 Ribosomal protein L16p/L10e NDY24_05115 PF00189 Ribosomal protein S3, C-terminal domain NDY24_05115 PF07650 KH domain NDY24_05120 PF00237 Ribosomal protein L22p/L17e NDY24_05125 PF00203 Ribosomal protein S19 NDY24_05130 PF00181 Ribosomal Proteins L2, RNA binding domain NDY24_05130 PF03947 Ribosomal Proteins L2, C-terminal domain NDY24_05135 PF00276 Ribosomal protein L23 NDY24_05140 PF00573 Ribosomal protein L4/L1 family NDY24_05145 PF00297 Ribosomal protein L3 NDY24_05150 PF00338 Ribosomal protein S10p/S20e NDY24_05155 PF03143 Elongation factor Tu C-terminal domain NDY24_05155 PF03144 Elongation factor Tu domain 2 NDY24_05155 PF00009 Elongation factor Tu GTP binding domain NDY24_05160 PF00679 Elongation factor G C-terminus NDY24_05160 PF00009 Elongation factor Tu GTP binding domain NDY24_05160 PF03144 Elongation factor Tu domain 2 NDY24_05160 PF14492 Elongation Factor G, domain II NDY24_05160 PF03764 Elongation factor G, domain IV NDY24_05165 PF00177 Ribosomal protein S7p/S5e NDY24_05170 PF00164 Ribosomal protein S12/S23 NDY24_05175 PF04998 RNA polymerase Rpb1, domain 5 NDY24_05175 PF00623 RNA polymerase Rpb1, domain 2 NDY24_05175 PF04997 RNA polymerase Rpb1, domain 1 NDY24_05175 PF04983 RNA polymerase Rpb1, domain 3 NDY24_05175 PF05000 RNA polymerase Rpb1, domain 4 NDY24_05180 PF04563 RNA polymerase beta subunit NDY24_05180 PF04561 RNA polymerase Rpb2, domain 2 NDY24_05180 PF04560 RNA polymerase Rpb2, domain 7 NDY24_05180 PF00562 RNA polymerase Rpb2, domain 6 NDY24_05180 PF10385 RNA polymerase beta subunit external 1 domain NDY24_05180 PF04565 RNA polymerase Rpb2, domain 3 NDY24_05185 PF16320 Ribosomal protein L7/L12 dimerisation domain NDY24_05185 PF00542 Ribosomal protein L7/L12 C-terminal domain NDY24_05190 PF00466 Ribosomal protein L10 NDY24_05195 PF00687 Ribosomal protein L1p/L10e family NDY24_05200 PF00298 Ribosomal protein L11, RNA binding domain NDY24_05200 PF03946 Ribosomal protein L11, N-terminal domain NDY24_05205 PF00467 KOW motif NDY24_05205 PF02357 Transcription termination factor nusG NDY24_05210 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NDY24_05220 PF03144 Elongation factor Tu domain 2 NDY24_05220 PF00009 Elongation factor Tu GTP binding domain NDY24_05220 PF03143 Elongation factor Tu C-terminal domain NDY24_05240 PF01926 50S ribosome-binding GTPase NDY24_05240 PF06071 Protein of unknown function (DUF933) NDY24_05245 PF01195 Peptidyl-tRNA hydrolase NDY24_05250 PF01386 Ribosomal L25p family NDY24_05250 PF14693 Ribosomal protein TL5, C-terminal domain NDY24_05255 PF14572 Phosphoribosyl synthetase-associated domain NDY24_05255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDY24_05265 PF08544 GHMP kinases C terminal NDY24_05265 PF00288 GHMP kinases N terminal domain NDY24_05270 PF03550 Outer membrane lipoprotein LolB NDY24_05280 PF01488 Shikimate / quinate 5-dehydrogenase NDY24_05280 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NDY24_05280 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NDY24_05285 PF03462 PCRF domain NDY24_05285 PF00472 RF-1 domain NDY24_05295 PF00994 Probable molybdopterin binding domain NDY24_05300 PF03976 Polyphosphate kinase 2 (PPK2) NDY24_05310 PF00708 Acylphosphatase NDY24_05315 PF08534 Redoxin NDY24_05320 PF03631 Virulence factor BrkB NDY24_05325 PF03358 NADPH-dependent FMN reductase NDY24_05340 PF04073 Aminoacyl-tRNA editing domain NDY24_05345 PF04151 Bacterial pre-peptidase C-terminal domain NDY24_05345 PF00082 Subtilase family NDY24_05350 PF04151 Bacterial pre-peptidase C-terminal domain NDY24_05350 PF00082 Subtilase family NDY24_05355 PF04151 Bacterial pre-peptidase C-terminal domain NDY24_05355 PF00082 Subtilase family NDY24_05410 PF01367 5'-3' exonuclease, C-terminal SAM fold NDY24_05410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDY24_05410 PF00476 DNA polymerase family A NDY24_05410 PF01612 3'-5' exonuclease NDY24_05415 PF00293 NUDIX domain NDY24_05425 PF00561 alpha/beta hydrolase fold NDY24_05430 PF05175 Methyltransferase small domain NDY24_05430 PF17827 PrmC N-terminal domain NDY24_05435 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDY24_05435 PF00578 AhpC/TSA family NDY24_05440 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_05440 PF13192 Thioredoxin domain NDY24_05445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_05445 PF03466 LysR substrate binding domain NDY24_05450 PF01272 Transcription elongation factor, GreA/GreB, C-term NDY24_05450 PF14760 Rnk N-terminus NDY24_05455 PF00923 Transaldolase/Fructose-6-phosphate aldolase NDY24_05465 PF01625 Peptide methionine sulfoxide reductase NDY24_05475 PF00196 Bacterial regulatory proteins, luxR family NDY24_05475 PF00072 Response regulator receiver domain NDY24_05480 PF00512 His Kinase A (phospho-acceptor) domain NDY24_05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_05480 PF00672 HAMP domain NDY24_05480 PF17149 Periplasmic sensor domain found in signal transduction proteins NDY24_05480 PF01627 Hpt domain NDY24_05480 PF00072 Response regulator receiver domain NDY24_05485 PF00990 Diguanylate cyclase, GGDEF domain NDY24_05485 PF00072 Response regulator receiver domain NDY24_05505 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDY24_05505 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NDY24_05530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDY24_05530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NDY24_05535 PF08450 SMP-30/Gluconolactonase/LRE-like region NDY24_05555 PF00378 Enoyl-CoA hydratase/isomerase NDY24_05560 PF00171 Aldehyde dehydrogenase family NDY24_05565 PF00501 AMP-binding enzyme NDY24_05565 PF13193 AMP-binding enzyme C-terminal domain NDY24_05570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_05570 PF03466 LysR substrate binding domain NDY24_05575 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit NDY24_05575 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDY24_05580 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDY24_05585 PF00392 Bacterial regulatory proteins, gntR family NDY24_05585 PF07729 FCD domain NDY24_05605 PF01494 FAD binding domain NDY24_05610 PF01494 FAD binding domain NDY24_05620 PF01923 Cobalamin adenosyltransferase NDY24_05625 PF00850 Histone deacetylase domain NDY24_05630 PF03968 OstA-like protein NDY24_05630 PF04453 LPS transport system D NDY24_05635 PF09312 SurA N-terminal domain NDY24_05635 PF00639 PPIC-type PPIASE domain NDY24_05640 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NDY24_05645 PF00398 Ribosomal RNA adenine dimethylase NDY24_05650 PF04379 ApaG domain NDY24_05655 PF00149 Calcineurin-like phosphoesterase NDY24_05660 PF03358 NADPH-dependent FMN reductase NDY24_05665 PF00296 Luciferase-like monooxygenase NDY24_05675 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_05680 PF00005 ABC transporter NDY24_05685 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDY24_05685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDY24_05690 PF00186 Dihydrofolate reductase NDY24_05695 PF00303 Thymidylate synthase NDY24_05700 PF01790 Prolipoprotein diacylglyceryl transferase NDY24_05720 PF01219 Prokaryotic diacylglycerol kinase NDY24_05730 PF00512 His Kinase A (phospho-acceptor) domain NDY24_05730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_05730 PF08521 Two-component sensor kinase N-terminal NDY24_05735 PF00072 Response regulator receiver domain NDY24_05735 PF00486 Transcriptional regulatory protein, C terminal NDY24_05740 PF13472 GDSL-like Lipase/Acylhydrolase family NDY24_05745 PF00005 ABC transporter NDY24_05755 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDY24_05765 PF00005 ABC transporter NDY24_05770 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_05790 PF07715 TonB-dependent Receptor Plug Domain NDY24_05790 PF00593 TonB dependent receptor NDY24_05800 PF00248 Aldo/keto reductase family NDY24_05805 PF01773 Na+ dependent nucleoside transporter N-terminus NDY24_05805 PF07662 Na+ dependent nucleoside transporter C-terminus NDY24_05805 PF07670 Nucleoside recognition NDY24_05810 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDY24_05810 PF00294 pfkB family carbohydrate kinase NDY24_05815 PF01207 Dihydrouridine synthase (Dus) NDY24_05820 PF13649 Methyltransferase domain NDY24_05830 PF02773 S-adenosylmethionine synthetase, C-terminal domain NDY24_05830 PF02772 S-adenosylmethionine synthetase, central domain NDY24_05830 PF00438 S-adenosylmethionine synthetase, N-terminal domain NDY24_05835 PF00328 Histidine phosphatase superfamily (branch 2) NDY24_05875 PF04607 Region found in RelA / SpoT proteins NDY24_05900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDY24_05905 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_05905 PF00107 Zinc-binding dehydrogenase NDY24_05905 PF14765 Polyketide synthase dehydratase NDY24_05905 PF00550 Phosphopantetheine attachment site NDY24_05905 PF08659 KR domain NDY24_05905 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_05905 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_05905 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_05905 PF00698 Acyl transferase domain NDY24_05915 PF02219 Methylenetetrahydrofolate reductase NDY24_05930 PF00293 NUDIX domain NDY24_05940 PF02810 SEC-C motif NDY24_05940 PF07517 SecA DEAD-like domain NDY24_05940 PF01043 SecA preprotein cross-linking domain NDY24_05940 PF07516 SecA Wing and Scaffold domain NDY24_05945 PF01476 LysM domain NDY24_05945 PF01551 Peptidase family M23 NDY24_05945 PF08525 Opacity-associated protein A N-terminal motif NDY24_05955 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NDY24_05960 PF12327 FtsZ family, C-terminal domain NDY24_05960 PF00091 Tubulin/FtsZ family, GTPase domain NDY24_05965 PF02491 SHS2 domain inserted in FTSA NDY24_05970 PF03799 Cell division protein FtsQ NDY24_05970 PF08478 POTRA domain, FtsQ-type NDY24_05975 PF01820 D-ala D-ala ligase N-terminus NDY24_05975 PF07478 D-ala D-ala ligase C-terminus NDY24_05980 PF01225 Mur ligase family, catalytic domain NDY24_05980 PF02875 Mur ligase family, glutamate ligase domain NDY24_05980 PF08245 Mur ligase middle domain NDY24_05985 PF03033 Glycosyltransferase family 28 N-terminal domain NDY24_05985 PF04101 Glycosyltransferase family 28 C-terminal domain NDY24_05990 PF01098 Cell cycle protein NDY24_05995 PF00953 Glycosyl transferase family 4 NDY24_06000 PF08245 Mur ligase middle domain NDY24_06000 PF02875 Mur ligase family, glutamate ligase domain NDY24_06000 PF01225 Mur ligase family, catalytic domain NDY24_06005 PF01225 Mur ligase family, catalytic domain NDY24_06005 PF02875 Mur ligase family, glutamate ligase domain NDY24_06005 PF08245 Mur ligase middle domain NDY24_06010 PF03717 Penicillin-binding Protein dimerisation domain NDY24_06010 PF00905 Penicillin binding protein transpeptidase domain NDY24_06015 PF04999 Cell division protein FtsL NDY24_06020 PF01795 MraW methylase family NDY24_06025 PF02381 MraZ protein, putative antitoxin-like NDY24_06050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDY24_06060 PF02021 Uncharacterised protein family UPF0102 NDY24_06065 PF04307 LexA-binding, inner membrane-associated putative hydrolase NDY24_06070 PF02913 FAD linked oxidases, C-terminal domain NDY24_06070 PF01565 FAD binding domain NDY24_06075 PF00326 Prolyl oligopeptidase family NDY24_06075 PF07676 WD40-like Beta Propeller Repeat NDY24_06085 PF00072 Response regulator receiver domain NDY24_06085 PF00486 Transcriptional regulatory protein, C terminal NDY24_06090 PF02702 Osmosensitive K+ channel His kinase sensor domain NDY24_06090 PF00512 His Kinase A (phospho-acceptor) domain NDY24_06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_06090 PF13492 GAF domain NDY24_06090 PF13493 Domain of unknown function (DUF4118) NDY24_06095 PF02669 K+-transporting ATPase, c chain NDY24_06105 PF03814 Potassium-transporting ATPase A subunit NDY24_06120 PF00586 AIR synthase related protein, N-terminal domain NDY24_06120 PF02769 AIR synthase related protein, C-terminal domain NDY24_06125 PF01029 NusB family NDY24_06130 PF00885 6,7-dimethyl-8-ribityllumazine synthase NDY24_06140 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDY24_06140 PF00925 GTP cyclohydrolase II NDY24_06145 PF00677 Lumazine binding domain NDY24_06155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDY24_06155 PF01872 RibD C-terminal domain NDY24_06165 PF03477 ATP cone domain NDY24_06170 PF00464 Serine hydroxymethyltransferase NDY24_06180 PF00005 ABC transporter NDY24_06180 PF12848 ABC transporter NDY24_06185 PF01327 Polypeptide deformylase NDY24_06200 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDY24_06200 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NDY24_06235 PF07715 TonB-dependent Receptor Plug Domain NDY24_06235 PF00593 TonB dependent receptor NDY24_06245 PF00392 Bacterial regulatory proteins, gntR family NDY24_06245 PF07702 UTRA domain NDY24_06260 PF00263 Bacterial type II and III secretion system protein NDY24_06260 PF03958 Bacterial type II/III secretion system short domain NDY24_06270 PF10741 Type II secretion system (T2SS), protein M subtype b NDY24_06275 PF05137 Fimbrial assembly protein (PilN) NDY24_06280 PF03934 Type II secretion system (T2SS), protein K NDY24_06290 PF07963 Prokaryotic N-terminal methylation motif NDY24_06295 PF12019 Type II transport protein GspH NDY24_06300 PF08334 Type II secretion system (T2SS), protein G NDY24_06305 PF00482 Type II secretion system (T2SS), protein F NDY24_06310 PF00437 Type II/IV secretion system protein NDY24_06310 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDY24_06320 PF13018 Extended Signal Peptide of Type V secretion system NDY24_06320 PF03895 YadA-like membrane anchor domain NDY24_06320 PF05658 Head domain of trimeric autotransporter adhesin NDY24_06320 PF05662 Coiled stalk of trimeric autotransporter adhesin NDY24_06330 PF05662 Coiled stalk of trimeric autotransporter adhesin NDY24_06330 PF03895 YadA-like membrane anchor domain NDY24_06330 PF13018 Extended Signal Peptide of Type V secretion system NDY24_06330 PF05658 Head domain of trimeric autotransporter adhesin NDY24_06340 PF02769 AIR synthase related protein, C-terminal domain NDY24_06340 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NDY24_06340 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NDY24_06345 PF10411 Disulfide bond isomerase protein N-terminus NDY24_06345 PF13098 Thioredoxin-like domain NDY24_06350 PF02899 Phage integrase, N-terminal SAM-like domain NDY24_06350 PF00589 Phage integrase family NDY24_06360 PF03739 Lipopolysaccharide export system permease LptF/LptG NDY24_06370 PF00883 Cytosol aminopeptidase family, catalytic domain NDY24_06370 PF02789 Cytosol aminopeptidase family, N-terminal domain NDY24_06390 PF00544 Pectate lyase NDY24_06395 PF00544 Pectate lyase NDY24_06415 PF01066 CDP-alcohol phosphatidyltransferase NDY24_06430 PF03129 Anticodon binding domain NDY24_06430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDY24_06430 PF04073 Aminoacyl-tRNA editing domain NDY24_06445 PF02405 Permease MlaE NDY24_06450 PF00005 ABC transporter NDY24_06455 PF03886 ABC-type transport auxiliary lipoprotein component NDY24_06455 PF02470 MlaD protein NDY24_06485 PF01144 Coenzyme A transferase NDY24_06490 PF01144 Coenzyme A transferase NDY24_06500 PF01050 Mannose-6-phosphate isomerase NDY24_06500 PF00483 Nucleotidyl transferase NDY24_06505 PF04321 RmlD substrate binding domain NDY24_06510 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NDY24_06515 PF00483 Nucleotidyl transferase NDY24_06520 PF16363 GDP-mannose 4,6 dehydratase NDY24_06525 PF01012 Electron transfer flavoprotein domain NDY24_06530 PF01012 Electron transfer flavoprotein domain NDY24_06530 PF00766 Electron transfer flavoprotein FAD-binding domain NDY24_06540 PF00535 Glycosyl transferase family 2 NDY24_06560 PF01370 NAD dependent epimerase/dehydratase family NDY24_06565 PF16363 GDP-mannose 4,6 dehydratase NDY24_06580 PF00534 Glycosyl transferases group 1 NDY24_06580 PF13439 Glycosyltransferase Family 4 NDY24_06585 PF13847 Methyltransferase domain NDY24_06585 PF00069 Protein kinase domain NDY24_06590 PF00005 ABC transporter NDY24_06605 PF01053 Cys/Met metabolism PLP-dependent enzyme NDY24_06610 PF00571 CBS domain NDY24_06610 PF00291 Pyridoxal-phosphate dependent enzyme NDY24_06630 PF00437 Type II/IV secretion system protein NDY24_06635 PF14497 Glutathione S-transferase, C-terminal domain NDY24_06635 PF02798 Glutathione S-transferase, N-terminal domain NDY24_06645 PF00271 Helicase conserved C-terminal domain NDY24_06645 PF00270 DEAD/DEAH box helicase NDY24_06660 PF07715 TonB-dependent Receptor Plug Domain NDY24_06660 PF00593 TonB dependent receptor NDY24_06665 PF01242 6-pyruvoyl tetrahydropterin synthase NDY24_06680 PF12728 Helix-turn-helix domain NDY24_06690 PF13185 GAF domain NDY24_06700 PF00756 Putative esterase NDY24_06705 PF00593 TonB dependent receptor NDY24_06705 PF07715 TonB-dependent Receptor Plug Domain NDY24_06710 PF13419 Haloacid dehalogenase-like hydrolase NDY24_06715 PF11798 IMS family HHH motif NDY24_06715 PF11799 impB/mucB/samB family C-terminal domain NDY24_06715 PF00817 impB/mucB/samB family NDY24_06720 PF07977 FabA-like domain NDY24_06725 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_06725 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_06735 PF01432 Peptidase family M3 NDY24_06750 PF00394 Multicopper oxidase NDY24_06750 PF07731 Multicopper oxidase NDY24_06750 PF07732 Multicopper oxidase NDY24_06755 PF05275 Copper resistance protein B precursor (CopB) NDY24_06785 PF01380 SIS domain NDY24_06790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_06795 PF00005 ABC transporter NDY24_06815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_06815 PF00512 His Kinase A (phospho-acceptor) domain NDY24_06825 PF00132 Bacterial transferase hexapeptide (six repeats) NDY24_06825 PF14602 Hexapeptide repeat of succinyl-transferase NDY24_06825 PF12804 MobA-like NTP transferase domain NDY24_06835 PF01817 Chorismate mutase type II NDY24_06840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDY24_06840 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NDY24_06845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDY24_06845 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDY24_06850 PF00231 ATP synthase NDY24_06855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDY24_06855 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDY24_06855 PF00306 ATP synthase alpha/beta chain, C terminal domain NDY24_06865 PF00430 ATP synthase B/B' CF(0) NDY24_06870 PF00137 ATP synthase subunit C NDY24_06875 PF00119 ATP synthase A chain NDY24_06895 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_06895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDY24_06905 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDY24_06905 PF02817 e3 binding domain NDY24_06905 PF00364 Biotin-requiring enzyme NDY24_06935 PF03180 NLPA lipoprotein NDY24_06940 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_06945 PF00005 ABC transporter NDY24_06945 PF09383 NIL domain NDY24_06950 PF00892 EamA-like transporter family NDY24_06955 PF04461 Protein of unknown function (DUF520) NDY24_06970 PF00849 RNA pseudouridylate synthase NDY24_06970 PF01479 S4 domain NDY24_06975 PF08468 Methyltransferase small domain N-terminal NDY24_06975 PF05175 Methyltransferase small domain NDY24_06985 PF07995 Glucose / Sorbosone dehydrogenase NDY24_06995 PF00072 Response regulator receiver domain NDY24_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_06995 PF00512 His Kinase A (phospho-acceptor) domain NDY24_06995 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDY24_07015 PF00842 Alanine racemase, C-terminal domain NDY24_07015 PF01168 Alanine racemase, N-terminal domain NDY24_07020 PF01266 FAD dependent oxidoreductase NDY24_07025 PF01037 Lrp/AsnC ligand binding domain NDY24_07035 PF01641 SelR domain NDY24_07050 PF01618 MotA/TolQ/ExbB proton channel family NDY24_07055 PF13677 Membrane MotB of proton-channel complex MotA/MotB NDY24_07055 PF00691 OmpA family NDY24_07080 PF01061 ABC-2 type transporter NDY24_07085 PF00005 ABC transporter NDY24_07090 PF00999 Sodium/hydrogen exchanger family NDY24_07100 PF02469 Fasciclin domain NDY24_07125 PF03466 LysR substrate binding domain NDY24_07125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_07130 PF03358 NADPH-dependent FMN reductase NDY24_07135 PF00248 Aldo/keto reductase family NDY24_07145 PF05649 Peptidase family M13 NDY24_07145 PF01431 Peptidase family M13 NDY24_07160 PF13520 Amino acid permease NDY24_07170 PF04397 LytTr DNA-binding domain NDY24_07170 PF00072 Response regulator receiver domain NDY24_07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_07175 PF06580 Histidine kinase NDY24_07175 PF00672 HAMP domain NDY24_07175 PF02743 Cache domain NDY24_07195 PF05974 Domain of unknown function (DUF892) NDY24_07200 PF05067 Manganese containing catalase NDY24_07210 PF08448 PAS fold NDY24_07210 PF03705 CheR methyltransferase, all-alpha domain NDY24_07210 PF01339 CheB methylesterase NDY24_07210 PF01739 CheR methyltransferase, SAM binding domain NDY24_07225 PF00072 Response regulator receiver domain NDY24_07225 PF00158 Sigma-54 interaction domain NDY24_07225 PF02954 Bacterial regulatory protein, Fis family NDY24_07245 PF16363 GDP-mannose 4,6 dehydratase NDY24_07255 PF03275 UDP-galactopyranose mutase NDY24_07265 PF00005 ABC transporter NDY24_07265 PF00664 ABC transporter transmembrane region NDY24_07300 PF03466 LysR substrate binding domain NDY24_07300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_07305 PF07690 Major Facilitator Superfamily NDY24_07330 PF00593 TonB dependent receptor NDY24_07330 PF07715 TonB-dependent Receptor Plug Domain NDY24_07345 PF00005 ABC transporter NDY24_07355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_07355 PF03466 LysR substrate binding domain NDY24_07360 PF01042 Endoribonuclease L-PSP NDY24_07380 PF00672 HAMP domain NDY24_07380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_07380 PF02203 Tar ligand binding domain homologue NDY24_07410 PF01740 STAS domain NDY24_07410 PF00916 Sulfate permease family NDY24_07415 PF00557 Metallopeptidase family M24 NDY24_07430 PF01965 DJ-1/PfpI family NDY24_07440 PF07690 Major Facilitator Superfamily NDY24_07445 PF00440 Bacterial regulatory proteins, tetR family NDY24_07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_07450 PF03466 LysR substrate binding domain NDY24_07455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDY24_07485 PF00239 Resolvase, N terminal domain NDY24_07485 PF02796 Helix-turn-helix domain of resolvase NDY24_07515 PF07996 Type IV secretion system proteins NDY24_07545 PF00589 Phage integrase family NDY24_07560 PF04546 Sigma-70, non-essential region NDY24_07560 PF03979 Sigma-70 factor, region 1.1 NDY24_07560 PF00140 Sigma-70 factor, region 1.2 NDY24_07560 PF04542 Sigma-70 region 2 NDY24_07560 PF04539 Sigma-70 region 3 NDY24_07560 PF04545 Sigma-70, region 4 NDY24_07565 PF02580 D-Tyr-tRNA(Tyr) deacylase NDY24_07570 PF03279 Bacterial lipid A biosynthesis acyltransferase NDY24_07580 PF00925 GTP cyclohydrolase II NDY24_07600 PF00535 Glycosyl transferase family 2 NDY24_07615 PF01189 16S rRNA methyltransferase RsmB/F NDY24_07615 PF01029 NusB family NDY24_07620 PF00551 Formyl transferase NDY24_07620 PF02911 Formyl transferase, C-terminal domain NDY24_07625 PF01327 Polypeptide deformylase NDY24_07630 PF01476 LysM domain NDY24_07635 PF02481 DNA recombination-mediator protein A NDY24_07635 PF17782 DprA winged helix domain NDY24_07640 PF04361 Protein of unknown function (DUF494) NDY24_07645 PF07963 Prokaryotic N-terminal methylation motif NDY24_07645 PF00114 Pilin (bacterial filament) NDY24_07685 PF01343 Peptidase family S49 NDY24_07690 PF01554 MatE NDY24_07705 PF00270 DEAD/DEAH box helicase NDY24_07705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NDY24_07705 PF17764 3′ DNA-binding domain (3′BD) NDY24_07705 PF18074 Primosomal protein N C-terminal domain NDY24_07705 PF00271 Helicase conserved C-terminal domain NDY24_07715 PF00043 Glutathione S-transferase, C-terminal domain NDY24_07715 PF13417 Glutathione S-transferase, N-terminal domain NDY24_07730 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_07735 PF03458 UPF0126 domain NDY24_07740 PF04545 Sigma-70, region 4 NDY24_07740 PF04542 Sigma-70 region 2 NDY24_07745 PF03167 Uracil DNA glycosylase superfamily NDY24_07750 PF01339 CheB methylesterase NDY24_07750 PF00072 Response regulator receiver domain NDY24_07755 PF18075 FtsX extracellular domain NDY24_07760 PF00005 ABC transporter NDY24_07765 PF00270 DEAD/DEAH box helicase NDY24_07765 PF00271 Helicase conserved C-terminal domain NDY24_07765 PF12300 ATP-dependent RNA helicase RhlB NDY24_07770 PF00085 Thioredoxin NDY24_07775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDY24_07775 PF07498 Rho termination factor, N-terminal domain NDY24_07775 PF07497 Rho termination factor, RNA-binding domain NDY24_07810 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NDY24_07815 PF00072 Response regulator receiver domain NDY24_07815 PF00196 Bacterial regulatory proteins, luxR family NDY24_07825 PF03971 Monomeric isocitrate dehydrogenase NDY24_07835 PF01476 LysM domain NDY24_07835 PF00756 Putative esterase NDY24_07840 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NDY24_07840 PF14489 QueF-like protein NDY24_07845 PF01546 Peptidase family M20/M25/M40 NDY24_07845 PF07687 Peptidase dimerisation domain NDY24_07850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_07855 PF00873 AcrB/AcrD/AcrF family NDY24_07860 PF00873 AcrB/AcrD/AcrF family NDY24_07865 PF07063 Domain of unknown function (DUF1338) NDY24_07905 PF01427 D-ala-D-ala dipeptidase NDY24_07930 PF01510 N-acetylmuramoyl-L-alanine amidase NDY24_07940 PF13378 Enolase C-terminal domain-like NDY24_07940 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDY24_07950 PF13520 Amino acid permease NDY24_07965 PF05360 yiaA/B two helix domain NDY24_07970 PF07995 Glucose / Sorbosone dehydrogenase NDY24_07980 PF14310 Fibronectin type III-like domain NDY24_07980 PF01915 Glycosyl hydrolase family 3 C-terminal domain NDY24_07980 PF00933 Glycosyl hydrolase family 3 N terminal domain NDY24_07985 PF02152 Dihydroneopterin aldolase NDY24_07990 PF00814 Glycoprotease family NDY24_07995 PF01165 Ribosomal protein S21 NDY24_08000 PF09424 Yqey-like protein NDY24_08005 PF03631 Virulence factor BrkB NDY24_08015 PF13593 SBF-like CPA transporter family (DUF4137) NDY24_08025 PF01040 UbiA prenyltransferase family NDY24_08050 PF00510 Cytochrome c oxidase subunit III NDY24_08055 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NDY24_08065 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDY24_08070 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDY24_08070 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NDY24_08110 PF00579 tRNA synthetases class I (W and Y) NDY24_08115 PF04225 Opacity-associated protein A LysM-like domain NDY24_08115 PF01551 Peptidase family M23 NDY24_08120 PF03702 Anhydro-N-acetylmuramic acid kinase NDY24_08130 PF07690 Major Facilitator Superfamily NDY24_08135 PF03372 Endonuclease/Exonuclease/phosphatase family NDY24_08140 PF00156 Phosphoribosyl transferase domain NDY24_08150 PF13614 AAA domain NDY24_08155 PF02195 ParB-like nuclease domain NDY24_08155 PF17762 HTH domain found in ParB protein NDY24_08165 PF01370 NAD dependent epimerase/dehydratase family NDY24_08170 PF00535 Glycosyl transferase family 2 NDY24_08185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDY24_08185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDY24_08185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDY24_08185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDY24_08190 PF00692 dUTPase NDY24_08195 PF04127 DNA / pantothenate metabolism flavoprotein NDY24_08195 PF02441 Flavoprotein NDY24_08200 PF04002 RadC-like JAB domain NDY24_08205 PF03485 Arginyl tRNA synthetase N terminal domain NDY24_08205 PF05746 DALR anticodon binding domain NDY24_08205 PF00750 tRNA synthetases class I (R) NDY24_08215 PF00106 short chain dehydrogenase NDY24_08220 PF07715 TonB-dependent Receptor Plug Domain NDY24_08220 PF00593 TonB dependent receptor NDY24_08240 PF03033 Glycosyltransferase family 28 N-terminal domain NDY24_08245 PF00501 AMP-binding enzyme NDY24_08245 PF13193 AMP-binding enzyme C-terminal domain NDY24_08245 PF00668 Condensation domain NDY24_08245 PF00550 Phosphopantetheine attachment site NDY24_08245 PF00975 Thioesterase domain NDY24_08250 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDY24_08250 PF17944 Arginine decarboxylase C-terminal helical extension NDY24_08250 PF17810 Arginine decarboxylase helical bundle domain NDY24_08255 PF17284 Spermidine synthase tetramerisation domain NDY24_08280 PF00543 Nitrogen regulatory protein P-II NDY24_08285 PF04380 Membrane fusogenic activity NDY24_08290 PF01078 Magnesium chelatase, subunit ChlI NDY24_08290 PF13335 Magnesium chelatase, subunit ChlI C-terminal NDY24_08305 PF12792 CSS motif domain associated with EAL NDY24_08305 PF00563 EAL domain NDY24_08310 PF00487 Fatty acid desaturase NDY24_08315 PF00175 Oxidoreductase NAD-binding domain NDY24_08315 PF00970 Oxidoreductase FAD-binding domain NDY24_08315 PF00111 2Fe-2S iron-sulfur cluster binding domain NDY24_08320 PF00440 Bacterial regulatory proteins, tetR family NDY24_08355 PF08338 Domain of unknown function (DUF1731) NDY24_08355 PF01370 NAD dependent epimerase/dehydratase family NDY24_08360 PF00072 Response regulator receiver domain NDY24_08360 PF00486 Transcriptional regulatory protein, C terminal NDY24_08385 PF13180 PDZ domain NDY24_08385 PF00595 PDZ domain NDY24_08405 PF01594 AI-2E family transporter NDY24_08410 PF13419 Haloacid dehalogenase-like hydrolase NDY24_08415 PF00883 Cytosol aminopeptidase family, catalytic domain NDY24_08415 PF02789 Cytosol aminopeptidase family, N-terminal domain NDY24_08445 PF00196 Bacterial regulatory proteins, luxR family NDY24_08445 PF00072 Response regulator receiver domain NDY24_08450 PF07730 Histidine kinase NDY24_08455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_08460 PF00005 ABC transporter NDY24_08465 PF05598 Transposase domain (DUF772) NDY24_08465 PF01609 Transposase DDE domain NDY24_08490 PF00892 EamA-like transporter family NDY24_08510 PF00753 Metallo-beta-lactamase superfamily NDY24_08515 PF00579 tRNA synthetases class I (W and Y) NDY24_08520 PF05532 CsbD-like NDY24_08535 PF00491 Arginase family NDY24_08560 PF02223 Thymidylate kinase NDY24_08575 PF03309 Type III pantothenate kinase NDY24_08580 PF08279 HTH domain NDY24_08580 PF03099 Biotin/lipoate A/B protein ligase family NDY24_08580 PF02237 Biotin protein ligase C terminal domain NDY24_08590 PF06167 Glucose-regulated metallo-peptidase M90 NDY24_08605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_08610 PF00486 Transcriptional regulatory protein, C terminal NDY24_08610 PF00072 Response regulator receiver domain NDY24_08620 PF01207 Dihydrouridine synthase (Dus) NDY24_08640 PF06628 Catalase-related immune-responsive NDY24_08640 PF00199 Catalase NDY24_08645 PF13307 Helicase C-terminal domain NDY24_08645 PF06733 DEAD_2 NDY24_08660 PF01488 Shikimate / quinate 5-dehydrogenase NDY24_08660 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NDY24_08660 PF08501 Shikimate dehydrogenase substrate binding domain NDY24_08670 PF00175 Oxidoreductase NAD-binding domain NDY24_08670 PF00258 Flavodoxin NDY24_08670 PF00667 FAD binding domain NDY24_08675 PF00490 Delta-aminolevulinic acid dehydratase NDY24_08695 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NDY24_08730 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NDY24_08770 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NDY24_08770 PF00326 Prolyl oligopeptidase family NDY24_08795 PF04820 Tryptophan halogenase NDY24_08810 PF00005 ABC transporter NDY24_08820 PF01381 Helix-turn-helix NDY24_08830 PF01229 Glycosyl hydrolases family 39 NDY24_08835 PF02583 Metal-sensitive transcriptional repressor NDY24_08845 PF00175 Oxidoreductase NAD-binding domain NDY24_08845 PF00111 2Fe-2S iron-sulfur cluster binding domain NDY24_08845 PF00970 Oxidoreductase FAD-binding domain NDY24_08850 PF00005 ABC transporter NDY24_08855 PF01061 ABC-2 type transporter NDY24_08870 PF02558 Ketopantoate reductase PanE/ApbA NDY24_08870 PF08546 Ketopantoate reductase PanE/ApbA C terminal NDY24_08890 PF03061 Thioesterase superfamily NDY24_08895 PF00085 Thioredoxin NDY24_08915 PF00268 Ribonucleotide reductase, small chain NDY24_08930 PF13380 CoA binding domain NDY24_08930 PF13607 Succinyl-CoA ligase like flavodoxin domain NDY24_08930 PF00583 Acetyltransferase (GNAT) family NDY24_08945 PF07715 TonB-dependent Receptor Plug Domain NDY24_08945 PF04886 PT repeat NDY24_08945 PF00593 TonB dependent receptor NDY24_08950 PF01769 Divalent cation transporter NDY24_08950 PF00571 CBS domain NDY24_08950 PF03448 MgtE intracellular N domain NDY24_08955 PF02254 TrkA-N domain NDY24_08955 PF00999 Sodium/hydrogen exchanger family NDY24_08960 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NDY24_08960 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NDY24_08965 PF00723 Glycosyl hydrolases family 15 NDY24_08975 PF05166 YcgL domain NDY24_08980 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_08980 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_09030 PF01553 Acyltransferase NDY24_09040 PF00550 Phosphopantetheine attachment site NDY24_09045 PF04820 Tryptophan halogenase NDY24_09060 PF13193 AMP-binding enzyme C-terminal domain NDY24_09060 PF00501 AMP-binding enzyme NDY24_09080 PF01218 Coproporphyrinogen III oxidase NDY24_09085 PF01612 3'-5' exonuclease NDY24_09085 PF00476 DNA polymerase family A NDY24_09085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDY24_09085 PF01367 5'-3' exonuclease, C-terminal SAM fold NDY24_09095 PF00069 Protein kinase domain NDY24_09095 PF03793 PASTA domain NDY24_09120 PF01734 Patatin-like phospholipase NDY24_09145 PF13361 UvrD-like helicase C-terminal domain NDY24_09145 PF00580 UvrD/REP helicase N-terminal domain NDY24_09155 PF13396 Phospholipase_D-nuclease N-terminal NDY24_09155 PF13091 PLD-like domain NDY24_09160 PF03466 LysR substrate binding domain NDY24_09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_09165 PF03737 Aldolase/RraA NDY24_09170 PF04303 PrpF protein NDY24_09175 PF04909 Amidohydrolase NDY24_09180 PF00471 Ribosomal protein L33 NDY24_09185 PF00830 Ribosomal L28 family NDY24_09195 PF00873 AcrB/AcrD/AcrF family NDY24_09200 PF13533 Biotin-lipoyl like NDY24_09225 PF09423 PhoD-like phosphatase NDY24_09225 PF16655 PhoD-like phosphatase, N-terminal domain NDY24_09230 PF16655 PhoD-like phosphatase, N-terminal domain NDY24_09230 PF09423 PhoD-like phosphatase NDY24_09235 PF01648 4'-phosphopantetheinyl transferase superfamily NDY24_09240 PF04226 Transglycosylase associated protein NDY24_09250 PF03372 Endonuclease/Exonuclease/phosphatase family NDY24_09270 PF00480 ROK family NDY24_09280 PF09312 SurA N-terminal domain NDY24_09280 PF00639 PPIC-type PPIASE domain NDY24_09295 PF00474 Sodium:solute symporter family NDY24_09300 PF04341 Protein of unknown function, DUF485 NDY24_09310 PF00501 AMP-binding enzyme NDY24_09310 PF16177 Acetyl-coenzyme A synthetase N-terminus NDY24_09310 PF13193 AMP-binding enzyme C-terminal domain NDY24_09315 PF00072 Response regulator receiver domain NDY24_09315 PF00196 Bacterial regulatory proteins, luxR family NDY24_09355 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDY24_09360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDY24_09360 PF13378 Enolase C-terminal domain-like NDY24_09365 PF05336 L-rhamnose mutarotase NDY24_09370 PF07690 Major Facilitator Superfamily NDY24_09375 PF09339 IclR helix-turn-helix domain NDY24_09375 PF01614 Bacterial transcriptional regulator NDY24_09390 PF02659 Putative manganese efflux pump NDY24_09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_09395 PF00512 His Kinase A (phospho-acceptor) domain NDY24_09400 PF06165 Glycosyltransferase family 36 NDY24_09400 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NDY24_09415 PF13570 PQQ-like domain NDY24_09415 PF13360 PQQ-like domain NDY24_09415 PF01011 PQQ enzyme repeat NDY24_09440 PF04357 TamB, inner membrane protein subunit of TAM complex NDY24_09445 PF01103 Surface antigen NDY24_09445 PF17243 POTRA domain TamA domain 1 NDY24_09450 PF07715 TonB-dependent Receptor Plug Domain NDY24_09450 PF00593 TonB dependent receptor NDY24_09455 PF13181 Tetratricopeptide repeat NDY24_09460 PF02092 Glycyl-tRNA synthetase beta subunit NDY24_09460 PF05746 DALR anticodon binding domain NDY24_09465 PF02091 Glycyl-tRNA synthetase alpha subunit NDY24_09470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDY24_09470 PF00437 Type II/IV secretion system protein NDY24_09480 PF00958 GMP synthase C terminal domain NDY24_09480 PF00117 Glutamine amidotransferase class-I NDY24_09495 PF02416 mttA/Hcf106 family NDY24_09500 PF02416 mttA/Hcf106 family NDY24_09510 PF00762 Ferrochelatase NDY24_09515 PF12697 Alpha/beta hydrolase family NDY24_09525 PF04381 Putative exonuclease, RdgC NDY24_09540 PF00356 Bacterial regulatory proteins, lacI family NDY24_09550 PF07477 Glycosyl hydrolase family 67 C-terminus NDY24_09550 PF07488 Glycosyl hydrolase family 67 middle domain NDY24_09550 PF03648 Glycosyl hydrolase family 67 N-terminus NDY24_09560 PF13378 Enolase C-terminal domain-like NDY24_09560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDY24_09575 PF01232 Mannitol dehydrogenase Rossmann domain NDY24_09575 PF08125 Mannitol dehydrogenase C-terminal domain NDY24_09605 PF02652 L-lactate permease NDY24_09630 PF00331 Glycosyl hydrolase family 10 NDY24_09640 PF02614 Glucuronate isomerase NDY24_09645 PF00553 Cellulose binding domain NDY24_09645 PF03422 Carbohydrate binding module (family 6) NDY24_09645 PF00331 Glycosyl hydrolase family 10 NDY24_09690 PF14765 Polyketide synthase dehydratase NDY24_09690 PF08659 KR domain NDY24_09690 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_09690 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_09690 PF00550 Phosphopantetheine attachment site NDY24_09690 PF00107 Zinc-binding dehydrogenase NDY24_09690 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_09690 PF00698 Acyl transferase domain NDY24_09690 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_09695 PF01553 Acyltransferase NDY24_09705 PF00356 Bacterial regulatory proteins, lacI family NDY24_09720 PF04820 Tryptophan halogenase NDY24_09725 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NDY24_09730 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NDY24_09735 PF04337 Protein of unknown function, DUF480 NDY24_09750 PF13302 Acetyltransferase (GNAT) domain NDY24_09755 PF13361 UvrD-like helicase C-terminal domain NDY24_09755 PF00580 UvrD/REP helicase N-terminal domain NDY24_09760 PF00265 Thymidine kinase NDY24_09765 PF00360 Phytochrome region NDY24_09765 PF01590 GAF domain NDY24_09765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_09765 PF00512 His Kinase A (phospho-acceptor) domain NDY24_09765 PF08446 PAS fold NDY24_09770 PF04349 Periplasmic glucan biosynthesis protein, MdoG NDY24_09780 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDY24_09780 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDY24_09780 PF06827 Zinc finger found in FPG and IleRS NDY24_09815 PF03594 Benzoate membrane transport protein NDY24_09820 PF08446 PAS fold NDY24_09820 PF01590 GAF domain NDY24_09820 PF13426 PAS domain NDY24_09820 PF00360 Phytochrome region NDY24_09830 PF07690 Major Facilitator Superfamily NDY24_09845 PF02810 SEC-C motif NDY24_09850 PF01925 Sulfite exporter TauE/SafE NDY24_09860 PF07715 TonB-dependent Receptor Plug Domain NDY24_09860 PF00593 TonB dependent receptor NDY24_09885 PF01227 GTP cyclohydrolase I NDY24_09895 PF07869 Protein of unknown function (DUF1656) NDY24_09900 PF00529 HlyD membrane-fusion protein of T1SS NDY24_09900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_09905 PF02321 Outer membrane efflux protein NDY24_09910 PF04632 Fusaric acid resistance protein family NDY24_09915 PF00083 Sugar (and other) transporter NDY24_10040 PF12833 Helix-turn-helix domain NDY24_10040 PF06719 AraC-type transcriptional regulator N-terminus NDY24_10055 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB NDY24_10070 PF13361 UvrD-like helicase C-terminal domain NDY24_10070 PF00580 UvrD/REP helicase N-terminal domain NDY24_10070 PF12705 PD-(D/E)XK nuclease superfamily NDY24_10110 PF00005 ABC transporter NDY24_10115 PF02405 Permease MlaE NDY24_10120 PF02470 MlaD protein NDY24_10125 PF05494 MlaC protein NDY24_10135 PF04333 MlaA lipoprotein NDY24_10145 PF05199 GMC oxidoreductase NDY24_10145 PF00732 GMC oxidoreductase NDY24_10155 PF00255 Glutathione peroxidase NDY24_10165 PF02646 RmuC family NDY24_10170 PF00043 Glutathione S-transferase, C-terminal domain NDY24_10170 PF13417 Glutathione S-transferase, N-terminal domain NDY24_10175 PF13520 Amino acid permease NDY24_10180 PF07971 Glycosyl hydrolase family 92 NDY24_10180 PF17678 Glycosyl hydrolase family 92 N-terminal domain NDY24_10185 PF05394 Avirulence protein NDY24_10210 PF00593 TonB dependent receptor NDY24_10210 PF07715 TonB-dependent Receptor Plug Domain NDY24_10220 PF00990 Diguanylate cyclase, GGDEF domain NDY24_10225 PF05651 Putative sugar diacid recognition NDY24_10225 PF13556 PucR C-terminal helix-turn-helix domain NDY24_10225 PF17853 GGDEF-like domain NDY24_10235 PF07690 Major Facilitator Superfamily NDY24_10250 PF01804 Penicillin amidase NDY24_10255 PF00593 TonB dependent receptor NDY24_10255 PF07715 TonB-dependent Receptor Plug Domain NDY24_10290 PF17785 PUA-like domain NDY24_10290 PF10672 S-adenosylmethionine-dependent methyltransferase NDY24_10295 PF03741 Integral membrane protein TerC family NDY24_10300 PF01694 Rhomboid family NDY24_10305 PF03009 Glycerophosphoryl diester phosphodiesterase family NDY24_10320 PF01569 PAP2 superfamily NDY24_10325 PF00593 TonB dependent receptor NDY24_10340 PF01926 50S ribosome-binding GTPase NDY24_10340 PF12631 MnmE helical domain NDY24_10340 PF10396 GTP-binding protein TrmE N-terminus NDY24_10345 PF14849 YidC periplasmic domain NDY24_10345 PF02096 60Kd inner membrane protein NDY24_10350 PF00825 Ribonuclease P NDY24_10355 PF00468 Ribosomal protein L34 NDY24_10360 PF11638 DnaA N-terminal domain NDY24_10360 PF08299 Bacterial dnaA protein helix-turn-helix NDY24_10360 PF00308 Bacterial dnaA protein NDY24_10365 PF00712 DNA polymerase III beta subunit, N-terminal domain NDY24_10365 PF02767 DNA polymerase III beta subunit, central domain NDY24_10365 PF02768 DNA polymerase III beta subunit, C-terminal domain NDY24_10370 PF02463 RecF/RecN/SMC N terminal domain NDY24_10375 PF00204 DNA gyrase B NDY24_10375 PF18053 DNA gyrase B subunit insert domain NDY24_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_10375 PF01751 Toprim domain NDY24_10375 PF00986 DNA gyrase B subunit, carboxyl terminus NDY24_10385 PF01435 Peptidase family M48 NDY24_10395 PF03544 Gram-negative bacterial TonB protein C-terminal NDY24_10400 PF01618 MotA/TolQ/ExbB proton channel family NDY24_10405 PF02472 Biopolymer transport protein ExbD/TolR NDY24_10410 PF02472 Biopolymer transport protein ExbD/TolR NDY24_10420 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NDY24_10430 PF13396 Phospholipase_D-nuclease N-terminal NDY24_10430 PF13091 PLD-like domain NDY24_10450 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NDY24_10465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDY24_10465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDY24_10470 PF13180 PDZ domain NDY24_10470 PF03572 Peptidase family S41 NDY24_10475 PF01551 Peptidase family M23 NDY24_10485 PF04389 Peptidase family M28 NDY24_10495 PF00150 Cellulase (glycosyl hydrolase family 5) NDY24_10500 PF00150 Cellulase (glycosyl hydrolase family 5) NDY24_10505 PF00150 Cellulase (glycosyl hydrolase family 5) NDY24_10510 PF00150 Cellulase (glycosyl hydrolase family 5) NDY24_10515 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_10515 PF00107 Zinc-binding dehydrogenase NDY24_10525 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_10525 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDY24_10530 PF00310 Glutamine amidotransferases class-II NDY24_10530 PF01645 Conserved region in glutamate synthase NDY24_10530 PF04898 Glutamate synthase central domain NDY24_10530 PF01493 GXGXG motif NDY24_10565 PF05726 Pirin C-terminal cupin domain NDY24_10565 PF02678 Pirin NDY24_10575 PF02525 Flavodoxin-like fold NDY24_10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_10580 PF03466 LysR substrate binding domain NDY24_10590 PF06165 Glycosyltransferase family 36 NDY24_10590 PF10091 Putative glucoamylase NDY24_10590 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NDY24_10595 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NDY24_10595 PF06165 Glycosyltransferase family 36 NDY24_10595 PF10091 Putative glucoamylase NDY24_10670 PF02661 Fic/DOC family NDY24_10670 PF13784 Fic/DOC family N-terminal NDY24_10675 PF03006 Haemolysin-III related NDY24_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_10705 PF03466 LysR substrate binding domain NDY24_10720 PF01638 HxlR-like helix-turn-helix NDY24_10760 PF13683 Integrase core domain NDY24_10760 PF13276 HTH-like domain NDY24_10840 PF01695 IstB-like ATP binding protein NDY24_10845 PF00665 Integrase core domain NDY24_10885 PF00144 Beta-lactamase NDY24_10895 PF05532 CsbD-like NDY24_10900 PF00072 Response regulator receiver domain NDY24_10900 PF00196 Bacterial regulatory proteins, luxR family NDY24_10920 PF01447 Thermolysin metallopeptidase, catalytic domain NDY24_10920 PF02868 Thermolysin metallopeptidase, alpha-helical domain NDY24_10920 PF16485 Protealysin propeptide NDY24_10930 PF13344 Haloacid dehalogenase-like hydrolase NDY24_10930 PF00293 NUDIX domain NDY24_10935 PF07859 alpha/beta hydrolase fold NDY24_10945 PF00085 Thioredoxin NDY24_10950 PF08946 Osmosensory transporter coiled coil NDY24_10950 PF00083 Sugar (and other) transporter NDY24_10990 PF17863 AAA lid domain NDY24_10990 PF07726 ATPase family associated with various cellular activities (AAA) NDY24_11040 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NDY24_11045 PF00155 Aminotransferase class I and II NDY24_11050 PF07715 TonB-dependent Receptor Plug Domain NDY24_11050 PF00593 TonB dependent receptor NDY24_11060 PF07883 Cupin domain NDY24_11070 PF00171 Aldehyde dehydrogenase family NDY24_11105 PF02735 Ku70/Ku80 beta-barrel domain NDY24_11110 PF04679 ATP dependent DNA ligase C terminal region NDY24_11110 PF01068 ATP dependent DNA ligase domain NDY24_11110 PF13298 DNA polymerase Ligase (LigD) NDY24_11120 PF01070 FMN-dependent dehydrogenase NDY24_11135 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NDY24_11140 PF07730 Histidine kinase NDY24_11145 PF00196 Bacterial regulatory proteins, luxR family NDY24_11145 PF00072 Response regulator receiver domain NDY24_11160 PF18500 CadC C-terminal domain 1 NDY24_11160 PF00486 Transcriptional regulatory protein, C terminal NDY24_11165 PF07055 Enoyl reductase FAD binding domain NDY24_11165 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NDY24_11165 PF12241 Trans-2-enoyl-CoA reductase catalytic region NDY24_11175 PF00294 pfkB family carbohydrate kinase NDY24_11180 PF00593 TonB dependent receptor NDY24_11180 PF07715 TonB-dependent Receptor Plug Domain NDY24_11190 PF01095 Pectinesterase NDY24_11390 PF11896 Domain of unknown function (DUF3416) NDY24_11390 PF00128 Alpha amylase, catalytic domain NDY24_11395 PF16657 Maltogenic Amylase, C-terminal domain NDY24_11395 PF00128 Alpha amylase, catalytic domain NDY24_11400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NDY24_11400 PF02806 Alpha amylase, C-terminal all-beta domain NDY24_11400 PF00128 Alpha amylase, catalytic domain NDY24_11425 PF00248 Aldo/keto reductase family NDY24_11430 PF13472 GDSL-like Lipase/Acylhydrolase family NDY24_11440 PF07859 alpha/beta hydrolase fold NDY24_11440 PF13472 GDSL-like Lipase/Acylhydrolase family NDY24_11450 PF03480 Bacterial extracellular solute-binding protein, family 7 NDY24_11460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NDY24_11465 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NDY24_11465 PF04616 Glycosyl hydrolases family 43 NDY24_11470 PF00356 Bacterial regulatory proteins, lacI family NDY24_11475 PF04962 KduI/IolB family NDY24_11520 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NDY24_11525 PF01037 Lrp/AsnC ligand binding domain NDY24_11530 PF00593 TonB dependent receptor NDY24_11530 PF07660 Secretin and TonB N terminus short domain NDY24_11530 PF07715 TonB-dependent Receptor Plug Domain NDY24_11540 PF00005 ABC transporter NDY24_11555 PF00005 ABC transporter NDY24_11555 PF00571 CBS domain NDY24_11560 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_11570 PF12867 DinB superfamily NDY24_11570 PF03781 Sulfatase-modifying factor enzyme 1 NDY24_11580 PF13657 HipA N-terminal domain NDY24_11580 PF07804 HipA-like C-terminal domain NDY24_11585 PF01381 Helix-turn-helix NDY24_11605 PF10609 NUBPL iron-transfer P-loop NTPase NDY24_11605 PF01883 Iron-sulfur cluster assembly protein NDY24_11620 PF13091 PLD-like domain NDY24_11625 PF03061 Thioesterase superfamily NDY24_11640 PF01609 Transposase DDE domain NDY24_11640 PF05598 Transposase domain (DUF772) NDY24_11660 PF02673 Bacitracin resistance protein BacA NDY24_11665 PF00120 Glutamine synthetase, catalytic domain NDY24_11665 PF03951 Glutamine synthetase, beta-Grasp domain NDY24_11670 PF00543 Nitrogen regulatory protein P-II NDY24_11675 PF00909 Ammonium Transporter Family NDY24_11680 PF00989 PAS fold NDY24_11680 PF00512 His Kinase A (phospho-acceptor) domain NDY24_11680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_11685 PF00072 Response regulator receiver domain NDY24_11685 PF00158 Sigma-54 interaction domain NDY24_11685 PF02954 Bacterial regulatory protein, Fis family NDY24_11690 PF00080 Copper/zinc superoxide dismutase (SODC) NDY24_11695 PF00080 Copper/zinc superoxide dismutase (SODC) NDY24_11705 PF02803 Thiolase, C-terminal domain NDY24_11705 PF00108 Thiolase, N-terminal domain NDY24_11745 PF00581 Rhodanese-like domain NDY24_11750 PF02556 Preprotein translocase subunit SecB NDY24_11755 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDY24_11755 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDY24_11765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDY24_11765 PF00205 Thiamine pyrophosphate enzyme, central domain NDY24_11765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDY24_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_11770 PF00512 His Kinase A (phospho-acceptor) domain NDY24_11775 PF00158 Sigma-54 interaction domain NDY24_11775 PF02954 Bacterial regulatory protein, Fis family NDY24_11775 PF00072 Response regulator receiver domain NDY24_11795 PF00588 SpoU rRNA Methylase family NDY24_11810 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDY24_11810 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDY24_11820 PF00561 alpha/beta hydrolase fold NDY24_11825 PF03692 Putative zinc- or iron-chelating domain NDY24_11830 PF00501 AMP-binding enzyme NDY24_11850 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NDY24_11865 PF01820 D-ala D-ala ligase N-terminus NDY24_11865 PF07478 D-ala D-ala ligase C-terminus NDY24_11875 PF03109 ABC1 family NDY24_11880 PF00849 RNA pseudouridylate synthase NDY24_11890 PF00472 RF-1 domain NDY24_11915 PF12706 Beta-lactamase superfamily domain NDY24_11935 PF00999 Sodium/hydrogen exchanger family NDY24_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_11940 PF03466 LysR substrate binding domain NDY24_11945 PF01274 Malate synthase NDY24_11950 PF00463 Isocitrate lyase family NDY24_11955 PF00990 Diguanylate cyclase, GGDEF domain NDY24_11975 PF00326 Prolyl oligopeptidase family NDY24_11985 PF01039 Carboxyl transferase domain NDY24_11990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDY24_11990 PF02770 Acyl-CoA dehydrogenase, middle domain NDY24_11990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDY24_12030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NDY24_12045 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDY24_12045 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDY24_12070 PF03969 AFG1-like ATPase NDY24_12085 PF01047 MarR family NDY24_12090 PF02566 OsmC-like protein NDY24_12095 PF12697 Alpha/beta hydrolase family NDY24_12115 PF00248 Aldo/keto reductase family NDY24_12120 PF16884 N-terminal domain of oxidoreductase NDY24_12120 PF00107 Zinc-binding dehydrogenase NDY24_12125 PF00248 Aldo/keto reductase family NDY24_12135 PF00849 RNA pseudouridylate synthase NDY24_12145 PF00270 DEAD/DEAH box helicase NDY24_12145 PF04408 Helicase associated domain (HA2) NDY24_12145 PF00271 Helicase conserved C-terminal domain NDY24_12145 PF08482 ATP-dependent helicase C-terminal NDY24_12150 PF00672 HAMP domain NDY24_12150 PF02203 Tar ligand binding domain homologue NDY24_12150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_12155 PF07308 Protein of unknown function (DUF1456) NDY24_12160 PF00576 HIUase/Transthyretin family NDY24_12165 PF13454 FAD-NAD(P)-binding NDY24_12170 PF09349 OHCU decarboxylase NDY24_12170 PF01014 Uricase NDY24_12185 PF00266 Aminotransferase class-V NDY24_12190 PF01546 Peptidase family M20/M25/M40 NDY24_12190 PF07687 Peptidase dimerisation domain NDY24_12195 PF03466 LysR substrate binding domain NDY24_12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_12200 PF07690 Major Facilitator Superfamily NDY24_12205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_12205 PF03466 LysR substrate binding domain NDY24_12210 PF00561 alpha/beta hydrolase fold NDY24_12240 PF01609 Transposase DDE domain NDY24_12240 PF05598 Transposase domain (DUF772) NDY24_12270 PF01425 Amidase NDY24_12285 PF00860 Permease family NDY24_12295 PF00355 Rieske [2Fe-2S] domain NDY24_12300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_12300 PF03466 LysR substrate binding domain NDY24_12305 PF01026 TatD related DNase NDY24_12315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_12315 PF03466 LysR substrate binding domain NDY24_12320 PF07690 Major Facilitator Superfamily NDY24_12330 PF00561 alpha/beta hydrolase fold NDY24_12350 PF02146 Sir2 family NDY24_12355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDY24_12360 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDY24_12360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDY24_12375 PF07690 Major Facilitator Superfamily NDY24_12380 PF00486 Transcriptional regulatory protein, C terminal NDY24_12380 PF00072 Response regulator receiver domain NDY24_12385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_12385 PF00672 HAMP domain NDY24_12385 PF00512 His Kinase A (phospho-acceptor) domain NDY24_12390 PF00529 HlyD membrane-fusion protein of T1SS NDY24_12390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_12400 PF02321 Outer membrane efflux protein NDY24_12410 PF02219 Methylenetetrahydrofolate reductase NDY24_12415 PF02677 Epoxyqueuosine reductase QueH NDY24_12425 PF03358 NADPH-dependent FMN reductase NDY24_12435 PF01717 Cobalamin-independent synthase, Catalytic domain NDY24_12435 PF08267 Cobalamin-independent synthase, N-terminal domain NDY24_12445 PF05368 NmrA-like family NDY24_12450 PF01638 HxlR-like helix-turn-helix NDY24_12545 PF01609 Transposase DDE domain NDY24_12545 PF05598 Transposase domain (DUF772) NDY24_12550 PF05598 Transposase domain (DUF772) NDY24_12550 PF01609 Transposase DDE domain NDY24_12580 PF00920 Dehydratase family NDY24_12585 PF03692 Putative zinc- or iron-chelating domain NDY24_12590 PF00132 Bacterial transferase hexapeptide (six repeats) NDY24_12595 PF07690 Major Facilitator Superfamily NDY24_12600 PF01966 HD domain NDY24_12600 PF11871 Domain of unknown function (DUF3391) NDY24_12620 PF00171 Aldehyde dehydrogenase family NDY24_12630 PF01494 FAD binding domain NDY24_12640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDY24_12640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDY24_12645 PF00230 Major intrinsic protein NDY24_12650 PF01266 FAD dependent oxidoreductase NDY24_12650 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NDY24_12655 PF00455 DeoR C terminal sensor domain NDY24_12655 PF08220 DeoR-like helix-turn-helix domain NDY24_12665 PF00970 Oxidoreductase FAD-binding domain NDY24_12665 PF00111 2Fe-2S iron-sulfur cluster binding domain NDY24_12675 PF00355 Rieske [2Fe-2S] domain NDY24_12680 PF01144 Coenzyme A transferase NDY24_12685 PF01144 Coenzyme A transferase NDY24_12690 PF00108 Thiolase, N-terminal domain NDY24_12690 PF02803 Thiolase, C-terminal domain NDY24_12695 PF00775 Dioxygenase NDY24_12695 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NDY24_12710 PF12146 Serine aminopeptidase, S33 NDY24_12715 PF02627 Carboxymuconolactone decarboxylase family NDY24_12725 PF09339 IclR helix-turn-helix domain NDY24_12725 PF01614 Bacterial transcriptional regulator NDY24_12735 PF07859 alpha/beta hydrolase fold NDY24_12740 PF10677 Protein of unknown function (DUF2490) NDY24_12745 PF01134 Glucose inhibited division protein A NDY24_12745 PF13932 GidA associated domain NDY24_12755 PF00291 Pyridoxal-phosphate dependent enzyme NDY24_12780 PF13649 Methyltransferase domain NDY24_12790 PF12697 Alpha/beta hydrolase family NDY24_12795 PF00155 Aminotransferase class I and II NDY24_12800 PF04055 Radical SAM superfamily NDY24_12800 PF06968 Biotin and Thiamin Synthesis associated domain NDY24_12810 PF01040 UbiA prenyltransferase family NDY24_12835 PF12794 Mechanosensitive ion channel inner membrane domain 1 NDY24_12835 PF12795 Mechanosensitive ion channel porin domain NDY24_12835 PF00924 Mechanosensitive ion channel NDY24_12845 PF00884 Sulfatase NDY24_12850 PF03109 ABC1 family NDY24_12855 PF05661 Protein of unknown function (DUF808) NDY24_12860 PF02638 Glycosyl hydrolase-like 10 NDY24_12870 PF08323 Starch synthase catalytic domain NDY24_12870 PF00534 Glycosyl transferases group 1 NDY24_12875 PF00128 Alpha amylase, catalytic domain NDY24_12875 PF02806 Alpha amylase, C-terminal all-beta domain NDY24_12875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NDY24_12880 PF00128 Alpha amylase, catalytic domain NDY24_12880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NDY24_12880 PF11941 Domain of unknown function (DUF3459) NDY24_12885 PF02446 4-alpha-glucanotransferase NDY24_12890 PF00128 Alpha amylase, catalytic domain NDY24_12900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NDY24_12900 PF00128 Alpha amylase, catalytic domain NDY24_12930 PF06903 VirK protein NDY24_12935 PF06903 VirK protein NDY24_12940 PF02321 Outer membrane efflux protein NDY24_12945 PF00440 Bacterial regulatory proteins, tetR family NDY24_12955 PF00873 AcrB/AcrD/AcrF family NDY24_12965 PF00270 DEAD/DEAH box helicase NDY24_12965 PF00271 Helicase conserved C-terminal domain NDY24_12975 PF00364 Biotin-requiring enzyme NDY24_12975 PF02817 e3 binding domain NDY24_12975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDY24_12985 PF02780 Transketolase, C-terminal domain NDY24_12985 PF02779 Transketolase, pyrimidine binding domain NDY24_12990 PF00676 Dehydrogenase E1 component NDY24_13000 PF03301 Tryptophan 2,3-dioxygenase NDY24_13005 PF00854 POT family NDY24_13015 PF01047 MarR family NDY24_13020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDY24_13025 PF04480 Protein of unknown function (DUF559) NDY24_13030 PF04209 homogentisate 1,2-dioxygenase NDY24_13035 PF01609 Transposase DDE domain NDY24_13035 PF05598 Transposase domain (DUF772) NDY24_13070 PF03334 Na+/H+ antiporter subunit NDY24_13075 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NDY24_13085 PF00361 Proton-conducting membrane transporter NDY24_13090 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDY24_13095 PF13244 Domain of unknown function (DUF4040) NDY24_13095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDY24_13095 PF00361 Proton-conducting membrane transporter NDY24_13095 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NDY24_13135 PF01259 SAICAR synthetase NDY24_13140 PF00226 DnaJ domain NDY24_13140 PF05099 Tellurite resistance protein TerB NDY24_13150 PF00834 Ribulose-phosphate 3 epimerase family NDY24_13160 PF00781 Diacylglycerol kinase catalytic domain NDY24_13165 PF00425 chorismate binding enzyme NDY24_13165 PF04715 Anthranilate synthase component I, N terminal region NDY24_13185 PF01527 Transposase NDY24_13220 PF05598 Transposase domain (DUF772) NDY24_13220 PF01609 Transposase DDE domain NDY24_13230 PF05598 Transposase domain (DUF772) NDY24_13230 PF01609 Transposase DDE domain NDY24_13240 PF01609 Transposase DDE domain NDY24_13240 PF05598 Transposase domain (DUF772) NDY24_13315 PF01313 Bacterial export proteins, family 3 NDY24_13320 PF00813 FliP family NDY24_13335 PF00771 FHIPEP family NDY24_13340 PF01312 FlhB HrpN YscU SpaS Family NDY24_13355 PF01514 Secretory protein of YscJ/FliF family NDY24_13370 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDY24_13370 PF18269 T3SS EscN ATPase C-terminal domain NDY24_13370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDY24_13385 PF00263 Bacterial type II and III secretion system protein NDY24_13385 PF03958 Bacterial type II/III secretion system short domain NDY24_13395 PF01464 Transglycosylase SLT domain NDY24_13410 PF02203 Tar ligand binding domain homologue NDY24_13410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_13410 PF00672 HAMP domain NDY24_13415 PF00117 Glutamine amidotransferase class-I NDY24_13425 PF02885 Glycosyl transferase family, helical bundle domain NDY24_13425 PF00591 Glycosyl transferase family, a/b domain NDY24_13430 PF00218 Indole-3-glycerol phosphate synthase NDY24_13440 PF00027 Cyclic nucleotide-binding domain NDY24_13440 PF00325 Bacterial regulatory proteins, crp family NDY24_13445 PF02675 S-adenosylmethionine decarboxylase NDY24_13450 PF00893 Small Multidrug Resistance protein NDY24_13455 PF03232 Ubiquinone biosynthesis protein COQ7 NDY24_13460 PF00572 Ribosomal protein L13 NDY24_13465 PF00380 Ribosomal protein S9/S16 NDY24_13480 PF00293 NUDIX domain NDY24_13490 PF00210 Ferritin-like domain NDY24_13495 PF00512 His Kinase A (phospho-acceptor) domain NDY24_13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_13495 PF01627 Hpt domain NDY24_13495 PF00672 HAMP domain NDY24_13495 PF00072 Response regulator receiver domain NDY24_13495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDY24_13500 PF03707 Bacterial signalling protein N terminal repeat NDY24_13500 PF00563 EAL domain NDY24_13500 PF00990 Diguanylate cyclase, GGDEF domain NDY24_13520 PF01521 Iron-sulphur cluster biosynthesis NDY24_13525 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NDY24_13525 PF00293 NUDIX domain NDY24_13525 PF09297 NADH pyrophosphatase zinc ribbon domain NDY24_13530 PF03186 CobD/Cbib protein NDY24_13530 PF17113 Regulatory signalling modulator protein AmpE NDY24_13550 PF07690 Major Facilitator Superfamily NDY24_13555 PF12805 FUSC-like inner membrane protein yccS NDY24_13560 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NDY24_13560 PF02844 Phosphoribosylglycinamide synthetase, N domain NDY24_13560 PF02843 Phosphoribosylglycinamide synthetase, C domain NDY24_13565 PF02142 MGS-like domain NDY24_13565 PF01808 AICARFT/IMPCHase bienzyme NDY24_13590 PF00818 Ice nucleation protein repeat NDY24_13590 PF00818 Ice nucleation protein repeat NDY24_13595 PF02954 Bacterial regulatory protein, Fis family NDY24_13605 PF01381 Helix-turn-helix NDY24_13630 PF02785 Biotin carboxylase C-terminal domain NDY24_13630 PF00289 Biotin carboxylase, N-terminal domain NDY24_13630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDY24_13640 PF00364 Biotin-requiring enzyme NDY24_13645 PF01220 Dehydroquinase class II NDY24_13665 PF11412 Disulphide bond corrector protein DsbC NDY24_13665 PF02683 Cytochrome C biogenesis protein transmembrane region NDY24_13670 PF03091 CutA1 divalent ion tolerance protein NDY24_13675 PF04231 Endonuclease I NDY24_13680 PF00166 Chaperonin 10 Kd subunit NDY24_13685 PF00118 TCP-1/cpn60 chaperonin family NDY24_13695 PF00271 Helicase conserved C-terminal domain NDY24_13695 PF00176 SNF2 family N-terminal domain NDY24_13710 PF00270 DEAD/DEAH box helicase NDY24_13710 PF17191 RecG wedge domain NDY24_13710 PF13749 Putative ATP-dependent DNA helicase recG C-terminal NDY24_13715 PF01555 DNA methylase NDY24_13745 PF01738 Dienelactone hydrolase family NDY24_13760 PF00793 DAHP synthetase I family NDY24_13765 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NDY24_13765 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NDY24_13785 PF16220 Domain of unknown function (DUF4880) NDY24_13785 PF04773 FecR protein NDY24_13790 PF00593 TonB dependent receptor NDY24_13790 PF07715 TonB-dependent Receptor Plug Domain NDY24_13790 PF07660 Secretin and TonB N terminus short domain NDY24_13810 PF08335 GlnD PII-uridylyltransferase NDY24_13810 PF03710 Glutamate-ammonia ligase adenylyltransferase NDY24_13820 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NDY24_13825 PF02592 Putative vitamin uptake transporter NDY24_13850 PF04264 YceI-like domain NDY24_13870 PF16957 Malonate decarboxylase, alpha subunit, transporter NDY24_13875 PF06857 Malonate decarboxylase delta subunit (MdcD) NDY24_13880 PF01039 Carboxyl transferase domain NDY24_13890 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NDY24_13895 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NDY24_13900 PF08659 KR domain NDY24_13900 PF00550 Phosphopantetheine attachment site NDY24_13900 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_13900 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_13900 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_13900 PF00698 Acyl transferase domain NDY24_13910 PF07729 FCD domain NDY24_13910 PF00392 Bacterial regulatory proteins, gntR family NDY24_13925 PF01740 STAS domain NDY24_13950 PF07745 Glycosyl hydrolase family 53 NDY24_13955 PF00456 Transketolase, thiamine diphosphate binding domain NDY24_13955 PF17831 Pyruvate dehydrogenase E1 component middle domain NDY24_14055 PF01609 Transposase DDE domain NDY24_14055 PF05598 Transposase domain (DUF772) NDY24_14065 PF13340 Putative transposase of IS4/5 family (DUF4096) NDY24_14075 PF07715 TonB-dependent Receptor Plug Domain NDY24_14075 PF00593 TonB dependent receptor NDY24_14080 PF00326 Prolyl oligopeptidase family NDY24_14120 PF13409 Glutathione S-transferase, N-terminal domain NDY24_14155 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NDY24_14155 PF00326 Prolyl oligopeptidase family NDY24_14160 PF07759 Protein of unknown function (DUF1615) NDY24_14165 PF00990 Diguanylate cyclase, GGDEF domain NDY24_14190 PF00892 EamA-like transporter family NDY24_14195 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDY24_14210 PF00324 Amino acid permease NDY24_14215 PF01544 CorA-like Mg2+ transporter protein NDY24_14225 PF04616 Glycosyl hydrolases family 43 NDY24_14230 PF01204 Trehalase NDY24_14240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDY24_14240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDY24_14255 PF00544 Pectate lyase NDY24_14265 PF00563 EAL domain NDY24_14265 PF03707 Bacterial signalling protein N terminal repeat NDY24_14265 PF00990 Diguanylate cyclase, GGDEF domain NDY24_14270 PF02203 Tar ligand binding domain homologue NDY24_14270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_14270 PF00672 HAMP domain NDY24_14275 PF00150 Cellulase (glycosyl hydrolase family 5) NDY24_14275 PF00553 Cellulose binding domain NDY24_14280 PF01740 STAS domain NDY24_14280 PF00916 Sulfate permease family NDY24_14285 PF00990 Diguanylate cyclase, GGDEF domain NDY24_14300 PF13632 Glycosyl transferase family group 2 NDY24_14310 PF07694 5TMR of 5TMR-LYT NDY24_14310 PF06580 Histidine kinase NDY24_14315 PF00072 Response regulator receiver domain NDY24_14315 PF04397 LytTr DNA-binding domain NDY24_14320 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NDY24_14320 PF03900 Porphobilinogen deaminase, C-terminal domain NDY24_14345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NDY24_14345 PF00326 Prolyl oligopeptidase family NDY24_14350 PF00155 Aminotransferase class I and II NDY24_14360 PF04304 Protein of unknown function (DUF454) NDY24_14370 PF01678 Diaminopimelate epimerase NDY24_14380 PF00589 Phage integrase family NDY24_14380 PF02899 Phage integrase, N-terminal SAM-like domain NDY24_14385 PF00227 Proteasome subunit NDY24_14390 PF00004 ATPase family associated with various cellular activities (AAA) NDY24_14390 PF07724 AAA domain (Cdc48 subfamily) NDY24_14390 PF10431 C-terminal, D2-small domain, of ClpB protein NDY24_14395 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NDY24_14395 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDY24_14405 PF13673 Acetyltransferase (GNAT) domain NDY24_14410 PF13533 Biotin-lipoyl like NDY24_14420 PF01209 ubiE/COQ5 methyltransferase family NDY24_14425 PF03707 Bacterial signalling protein N terminal repeat NDY24_14425 PF00563 EAL domain NDY24_14425 PF00990 Diguanylate cyclase, GGDEF domain NDY24_14430 PF11838 ERAP1-like C-terminal domain NDY24_14430 PF01433 Peptidase family M1 domain NDY24_14445 PF13360 PQQ-like domain NDY24_14450 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDY24_14465 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_14465 PF00107 Zinc-binding dehydrogenase NDY24_14490 PF01925 Sulfite exporter TauE/SafE NDY24_14495 PF00171 Aldehyde dehydrogenase family NDY24_14500 PF13537 Glutamine amidotransferase domain NDY24_14500 PF00733 Asparagine synthase NDY24_14505 PF00483 Nucleotidyl transferase NDY24_14515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDY24_14515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDY24_14535 PF02954 Bacterial regulatory protein, Fis family NDY24_14535 PF01590 GAF domain NDY24_14535 PF00158 Sigma-54 interaction domain NDY24_14540 PF00294 pfkB family carbohydrate kinase NDY24_14550 PF04085 rod shape-determining protein MreC NDY24_14560 PF03717 Penicillin-binding Protein dimerisation domain NDY24_14560 PF00905 Penicillin binding protein transpeptidase domain NDY24_14565 PF01098 Cell cycle protein NDY24_14570 PF02534 Type IV secretory system Conjugative DNA transfer NDY24_14605 PF13406 Transglycosylase SLT domain NDY24_14610 PF03330 Lytic transglycolase NDY24_14610 PF05036 Sporulation related domain NDY24_14630 PF04359 Protein of unknown function (DUF493) NDY24_14635 PF03099 Biotin/lipoate A/B protein ligase family NDY24_14640 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NDY24_14640 PF04055 Radical SAM superfamily NDY24_14645 PF03572 Peptidase family S41 NDY24_14645 PF17804 Tail specific protease N-terminal domain NDY24_14645 PF00595 PDZ domain NDY24_14645 PF11818 C-terminal domain of tail specific protease (DUF3340) NDY24_14655 PF01467 Cytidylyltransferase-like NDY24_14655 PF00293 NUDIX domain NDY24_14690 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NDY24_14690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDY24_14695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDY24_14695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NDY24_14700 PF04972 BON domain NDY24_14720 PF07519 Tannase and feruloyl esterase NDY24_14730 PF07519 Tannase and feruloyl esterase NDY24_14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_14740 PF03466 LysR substrate binding domain NDY24_14745 PF08446 PAS fold NDY24_14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_14745 PF00512 His Kinase A (phospho-acceptor) domain NDY24_14745 PF00360 Phytochrome region NDY24_14745 PF01590 GAF domain NDY24_14750 PF00072 Response regulator receiver domain NDY24_14755 PF00512 His Kinase A (phospho-acceptor) domain NDY24_14755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_14760 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDY24_14800 PF00263 Bacterial type II and III secretion system protein NDY24_14800 PF03958 Bacterial type II/III secretion system short domain NDY24_14805 PF00437 Type II/IV secretion system protein NDY24_14810 PF00482 Type II secretion system (T2SS), protein F NDY24_14815 PF07963 Prokaryotic N-terminal methylation motif NDY24_14815 PF08334 Type II secretion system (T2SS), protein G NDY24_14820 PF12019 Type II transport protein GspH NDY24_14820 PF07963 Prokaryotic N-terminal methylation motif NDY24_14825 PF02501 Type II secretion system (T2SS), protein I NDY24_14825 PF07963 Prokaryotic N-terminal methylation motif NDY24_14830 PF07963 Prokaryotic N-terminal methylation motif NDY24_14830 PF11612 Type II secretion system (T2SS), protein J NDY24_14835 PF03934 Type II secretion system (T2SS), protein K NDY24_14860 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NDY24_14860 PF02837 Glycosyl hydrolases family 2, sugar binding domain NDY24_14860 PF00703 Glycosyl hydrolases family 2 NDY24_14860 PF16355 Domain of unknown function (DUF4982) NDY24_14860 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NDY24_14880 PF07702 UTRA domain NDY24_14880 PF00392 Bacterial regulatory proteins, gntR family NDY24_14885 PF07690 Major Facilitator Superfamily NDY24_14890 PF00356 Bacterial regulatory proteins, lacI family NDY24_14895 PF01380 SIS domain NDY24_14900 PF01979 Amidohydrolase family NDY24_14920 PF01966 HD domain NDY24_14920 PF01743 Poly A polymerase head domain NDY24_14920 PF12627 Probable RNA and SrmB- binding site of polymerase A NDY24_14930 PF07715 TonB-dependent Receptor Plug Domain NDY24_14930 PF00593 TonB dependent receptor NDY24_14940 PF05199 GMC oxidoreductase NDY24_14940 PF00732 GMC oxidoreductase NDY24_14945 PF00171 Aldehyde dehydrogenase family NDY24_14950 PF02028 BCCT, betaine/carnitine/choline family transporter NDY24_14960 PF01323 DSBA-like thioredoxin domain NDY24_14970 PF00034 Cytochrome c NDY24_14975 PF01926 50S ribosome-binding GTPase NDY24_14980 PF00753 Metallo-beta-lactamase superfamily NDY24_14980 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NDY24_14980 PF10996 Beta-Casp domain NDY24_14985 PF12833 Helix-turn-helix domain NDY24_14985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDY24_14990 PF04107 Glutamate-cysteine ligase family 2(GCS2) NDY24_14995 PF00672 HAMP domain NDY24_14995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_14995 PF00512 His Kinase A (phospho-acceptor) domain NDY24_15000 PF00072 Response regulator receiver domain NDY24_15000 PF00486 Transcriptional regulatory protein, C terminal NDY24_15020 PF07536 HWE histidine kinase NDY24_15020 PF13426 PAS domain NDY24_15020 PF13581 Histidine kinase-like ATPase domain NDY24_15025 PF02583 Metal-sensitive transcriptional repressor NDY24_15030 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_15030 PF00107 Zinc-binding dehydrogenase NDY24_15035 PF04828 Glutathione-dependent formaldehyde-activating enzyme NDY24_15040 PF00756 Putative esterase NDY24_15045 PF00155 Aminotransferase class I and II NDY24_15045 PF00392 Bacterial regulatory proteins, gntR family NDY24_15050 PF02567 Phenazine biosynthesis-like protein NDY24_15055 PF00892 EamA-like transporter family NDY24_15095 PF01979 Amidohydrolase family NDY24_15100 PF01979 Amidohydrolase family NDY24_15110 PF00462 Glutaredoxin NDY24_15115 PF01522 Polysaccharide deacetylase NDY24_15120 PF07715 TonB-dependent Receptor Plug Domain NDY24_15120 PF00593 TonB dependent receptor NDY24_15145 PF03193 RsgA GTPase NDY24_15170 PF00128 Alpha amylase, catalytic domain NDY24_15185 PF00356 Bacterial regulatory proteins, lacI family NDY24_15190 PF00106 short chain dehydrogenase NDY24_15195 PF03600 Citrate transporter NDY24_15205 PF00072 Response regulator receiver domain NDY24_15205 PF00486 Transcriptional regulatory protein, C terminal NDY24_15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_15210 PF00512 His Kinase A (phospho-acceptor) domain NDY24_15210 PF08521 Two-component sensor kinase N-terminal NDY24_15220 PF00196 Bacterial regulatory proteins, luxR family NDY24_15220 PF00072 Response regulator receiver domain NDY24_15225 PF00593 TonB dependent receptor NDY24_15225 PF07715 TonB-dependent Receptor Plug Domain NDY24_15230 PF03466 LysR substrate binding domain NDY24_15230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_15240 PF07690 Major Facilitator Superfamily NDY24_15250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_15250 PF00512 His Kinase A (phospho-acceptor) domain NDY24_15265 PF03949 Malic enzyme, NAD binding domain NDY24_15265 PF01515 Phosphate acetyl/butaryl transferase NDY24_15265 PF00390 Malic enzyme, N-terminal domain NDY24_15290 PF03279 Bacterial lipid A biosynthesis acyltransferase NDY24_15295 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NDY24_15315 PF00990 Diguanylate cyclase, GGDEF domain NDY24_15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_15325 PF00330 Aconitase family (aconitate hydratase) NDY24_15330 PF00694 Aconitase C-terminal domain NDY24_15335 PF08241 Methyltransferase domain NDY24_15340 PF00180 Isocitrate/isopropylmalate dehydrogenase NDY24_15345 PF08502 LeuA allosteric (dimerisation) domain NDY24_15345 PF00682 HMGL-like NDY24_15350 PF00291 Pyridoxal-phosphate dependent enzyme NDY24_15360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDY24_15360 PF00205 Thiamine pyrophosphate enzyme, central domain NDY24_15360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDY24_15375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_15375 PF02203 Tar ligand binding domain homologue NDY24_15375 PF00672 HAMP domain NDY24_15380 PF07715 TonB-dependent Receptor Plug Domain NDY24_15380 PF00593 TonB dependent receptor NDY24_15385 PF01964 Radical SAM ThiC family NDY24_15385 PF13667 ThiC-associated domain NDY24_15395 PF12833 Helix-turn-helix domain NDY24_15400 PF07715 TonB-dependent Receptor Plug Domain NDY24_15400 PF00593 TonB dependent receptor NDY24_15410 PF00719 Inorganic pyrophosphatase NDY24_15420 PF03030 Inorganic H+ pyrophosphatase NDY24_15430 PF00365 Phosphofructokinase NDY24_15440 PF08245 Mur ligase middle domain NDY24_15440 PF02875 Mur ligase family, glutamate ligase domain NDY24_15440 PF01225 Mur ligase family, catalytic domain NDY24_15450 PF01062 Bestrophin, RFP-TM, chloride channel NDY24_15455 PF01569 PAP2 superfamily NDY24_15485 PF00027 Cyclic nucleotide-binding domain NDY24_15485 PF00520 Ion transport protein NDY24_15490 PF00202 Aminotransferase class-III NDY24_15505 PF01593 Flavin containing amine oxidoreductase NDY24_15510 PF00034 Cytochrome c NDY24_15510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NDY24_15520 PF00155 Aminotransferase class I and II NDY24_15525 PF00127 Copper binding proteins, plastocyanin/azurin family NDY24_15535 PF00202 Aminotransferase class-III NDY24_15545 PF02581 Thiamine monophosphate synthase NDY24_15550 PF00301 Rubredoxin NDY24_15555 PF13369 Transglutaminase-like superfamily NDY24_15565 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDY24_15585 PF05164 Cell division protein ZapA NDY24_15595 PF03695 Uncharacterised protein family (UPF0149) NDY24_15600 PF05195 Aminopeptidase P, N-terminal domain NDY24_15600 PF00557 Metallopeptidase family M24 NDY24_15610 PF00557 Metallopeptidase family M24 NDY24_15625 PF06969 HemN C-terminal domain NDY24_15625 PF04055 Radical SAM superfamily NDY24_15630 PF01725 Ham1 family NDY24_15640 PF01138 3' exoribonuclease family, domain 1 NDY24_15640 PF03725 3' exoribonuclease family, domain 2 NDY24_15645 PF03755 YicC-like family, N-terminal region NDY24_15645 PF08340 Domain of unknown function (DUF1732) NDY24_15650 PF00625 Guanylate kinase NDY24_15655 PF01192 RNA polymerase Rpb6 NDY24_15675 PF01156 Inosine-uridine preferring nucleoside hydrolase NDY24_15680 PF01197 Ribosomal protein L31 NDY24_15685 PF00285 Citrate synthase, C-terminal domain NDY24_15700 PF11104 Type IV pilus assembly protein PilM; NDY24_15705 PF05137 Fimbrial assembly protein (PilN) NDY24_15710 PF04350 Pilus assembly protein, PilO NDY24_15715 PF04351 Pilus assembly protein, PilP NDY24_15720 PF07660 Secretin and TonB N terminus short domain NDY24_15720 PF11741 AMIN domain NDY24_15720 PF00263 Bacterial type II and III secretion system protein NDY24_15720 PF03958 Bacterial type II/III secretion system short domain NDY24_15725 PF17863 AAA lid domain NDY24_15725 PF07726 ATPase family associated with various cellular activities (AAA) NDY24_15745 PF07584 Aerotolerance regulator N-terminal NDY24_15745 PF13519 von Willebrand factor type A domain NDY24_15755 PF00375 Sodium:dicarboxylate symporter family NDY24_15760 PF02779 Transketolase, pyrimidine binding domain NDY24_15760 PF02780 Transketolase, C-terminal domain NDY24_15760 PF00456 Transketolase, thiamine diphosphate binding domain NDY24_15770 PF00593 TonB dependent receptor NDY24_15770 PF07715 TonB-dependent Receptor Plug Domain NDY24_15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_15775 PF03466 LysR substrate binding domain NDY24_15790 PF03734 L,D-transpeptidase catalytic domain NDY24_15790 PF01476 LysM domain NDY24_15810 PF03965 Penicillinase repressor NDY24_15825 PF03459 TOBE domain NDY24_15825 PF00005 ABC transporter NDY24_15830 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_15840 PF04273 Putative phosphatase (DUF442) NDY24_15840 PF00753 Metallo-beta-lactamase superfamily NDY24_15850 PF03922 OmpW family NDY24_15865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDY24_15865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDY24_15885 PF00162 Phosphoglycerate kinase NDY24_15890 PF13419 Haloacid dehalogenase-like hydrolase NDY24_15900 PF00274 Fructose-bisphosphate aldolase class-I NDY24_15905 PF01661 Macro domain NDY24_15915 PF00291 Pyridoxal-phosphate dependent enzyme NDY24_15925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_15925 PF03466 LysR substrate binding domain NDY24_15935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_15935 PF00072 Response regulator receiver domain NDY24_15935 PF09308 LuxQ, periplasmic NDY24_15935 PF00512 His Kinase A (phospho-acceptor) domain NDY24_15960 PF01507 Phosphoadenosine phosphosulfate reductase family NDY24_15965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDY24_15965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDY24_15970 PF00667 FAD binding domain NDY24_15970 PF00258 Flavodoxin NDY24_15970 PF00175 Oxidoreductase NAD-binding domain NDY24_15975 PF01507 Phosphoadenosine phosphosulfate reductase family NDY24_15980 PF00009 Elongation factor Tu GTP binding domain NDY24_15985 PF00529 HlyD membrane-fusion protein of T1SS NDY24_15985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_15990 PF00873 AcrB/AcrD/AcrF family NDY24_16080 PF00135 Carboxylesterase family NDY24_16090 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation NDY24_16090 PF10566 Glycoside hydrolase 97 NDY24_16090 PF14508 Glycosyl-hydrolase 97 N-terminal NDY24_16105 PF00356 Bacterial regulatory proteins, lacI family NDY24_16115 PF01741 Large-conductance mechanosensitive channel, MscL NDY24_16120 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDY24_16135 PF02080 TrkA-C domain NDY24_16135 PF03600 Citrate transporter NDY24_16140 PF02390 Putative methyltransferase NDY24_16145 PF05690 Thiazole biosynthesis protein ThiG NDY24_16155 PF03797 Autotransporter beta-domain NDY24_16155 PF00657 GDSL-like Lipase/Acylhydrolase NDY24_16180 PF00709 Adenylosuccinate synthetase NDY24_16220 PF05114 Protein of unknown function (DUF692) NDY24_16330 PF00069 Protein kinase domain NDY24_16330 PF03793 PASTA domain NDY24_16335 PF00069 Protein kinase domain NDY24_16335 PF03793 PASTA domain NDY24_16420 PF03412 Peptidase C39 family NDY24_16420 PF00664 ABC transporter transmembrane region NDY24_16420 PF00005 ABC transporter NDY24_16435 PF07690 Major Facilitator Superfamily NDY24_16440 PF02794 RTX toxin acyltransferase family NDY24_16455 PF01609 Transposase DDE domain NDY24_16455 PF05598 Transposase domain (DUF772) NDY24_16490 PF06114 IrrE N-terminal-like domain NDY24_16495 PF07690 Major Facilitator Superfamily NDY24_16500 PF00144 Beta-lactamase NDY24_16505 PF03466 LysR substrate binding domain NDY24_16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_16510 PF09335 SNARE associated Golgi protein NDY24_16515 PF02203 Tar ligand binding domain homologue NDY24_16515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_16515 PF00672 HAMP domain NDY24_16545 PF00128 Alpha amylase, catalytic domain NDY24_16545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NDY24_16550 PF08443 RimK-like ATP-grasp domain NDY24_16550 PF18030 RimK PreATP-grasp domain NDY24_16555 PF00072 Response regulator receiver domain NDY24_16555 PF00486 Transcriptional regulatory protein, C terminal NDY24_16560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_16560 PF00512 His Kinase A (phospho-acceptor) domain NDY24_16560 PF00989 PAS fold NDY24_16560 PF11808 Phosphate regulon sensor protein PhoR NDY24_16580 PF01121 Dephospho-CoA kinase NDY24_16585 PF01478 Type IV leader peptidase family NDY24_16585 PF06750 Bacterial Peptidase A24 N-terminal domain NDY24_16590 PF00482 Type II secretion system (T2SS), protein F NDY24_16595 PF07963 Prokaryotic N-terminal methylation motif NDY24_16595 PF00114 Pilin (bacterial filament) NDY24_16600 PF08019 Phosphoethanolamine transferase EptA/EptB NDY24_16600 PF00884 Sulfatase NDY24_16630 PF02661 Fic/DOC family NDY24_16640 PF02954 Bacterial regulatory protein, Fis family NDY24_16640 PF00072 Response regulator receiver domain NDY24_16640 PF00158 Sigma-54 interaction domain NDY24_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_16645 PF00512 His Kinase A (phospho-acceptor) domain NDY24_16650 PF00549 CoA-ligase NDY24_16650 PF08442 ATP-grasp domain NDY24_16660 PF03466 LysR substrate binding domain NDY24_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_16690 PF02540 NAD synthase NDY24_16690 PF00795 Carbon-nitrogen hydrolase NDY24_16700 PF13525 Outer membrane lipoprotein NDY24_16705 PF00849 RNA pseudouridylate synthase NDY24_16720 PF04134 Protein of unknown function, DUF393 NDY24_16725 PF02203 Tar ligand binding domain homologue NDY24_16725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_16725 PF00672 HAMP domain NDY24_16730 PF01011 PQQ enzyme repeat NDY24_16735 PF00982 Glycosyltransferase family 20 NDY24_16740 PF00723 Glycosyl hydrolases family 15 NDY24_16785 PF01541 GIY-YIG catalytic domain NDY24_16795 PF00296 Luciferase-like monooxygenase NDY24_16800 PF00248 Aldo/keto reductase family NDY24_16805 PF09084 NMT1/THI5 like NDY24_16810 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_16815 PF00005 ABC transporter NDY24_16820 PF00004 ATPase family associated with various cellular activities (AAA) NDY24_16820 PF07724 AAA domain (Cdc48 subfamily) NDY24_16820 PF17871 AAA lid domain NDY24_16820 PF10431 C-terminal, D2-small domain, of ClpB protein NDY24_16820 PF02861 Clp amino terminal domain, pathogenicity island component NDY24_16825 PF01053 Cys/Met metabolism PLP-dependent enzyme NDY24_16830 PF00593 TonB dependent receptor NDY24_16830 PF07715 TonB-dependent Receptor Plug Domain NDY24_16840 PF02277 Phosphoribosyltransferase NDY24_16855 PF00553 Cellulose binding domain NDY24_16855 PF00041 Fibronectin type III domain NDY24_16855 PF01341 Glycosyl hydrolases family 6 NDY24_16870 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDY24_16870 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NDY24_16875 PF06276 Ferric iron reductase FhuF-like transporter NDY24_16875 PF04183 IucA / IucC family NDY24_16880 PF07690 Major Facilitator Superfamily NDY24_16885 PF06276 Ferric iron reductase FhuF-like transporter NDY24_16885 PF04183 IucA / IucC family NDY24_16895 PF00593 TonB dependent receptor NDY24_16895 PF07660 Secretin and TonB N terminus short domain NDY24_16895 PF07715 TonB-dependent Receptor Plug Domain NDY24_16905 PF00999 Sodium/hydrogen exchanger family NDY24_16905 PF02254 TrkA-N domain NDY24_16910 PF00067 Cytochrome P450 NDY24_16915 PF07715 TonB-dependent Receptor Plug Domain NDY24_16915 PF00593 TonB dependent receptor NDY24_16920 PF07715 TonB-dependent Receptor Plug Domain NDY24_16920 PF00593 TonB dependent receptor NDY24_16925 PF07715 TonB-dependent Receptor Plug Domain NDY24_16925 PF00593 TonB dependent receptor NDY24_16930 PF00005 ABC transporter NDY24_16930 PF12848 ABC transporter NDY24_16945 PF07690 Major Facilitator Superfamily NDY24_16980 PF01709 Transcriptional regulator NDY24_16985 PF02075 Crossover junction endodeoxyribonuclease RuvC NDY24_16990 PF01330 RuvA N terminal domain NDY24_16990 PF07499 RuvA, C-terminal domain NDY24_16995 PF02705 K+ potassium transporter NDY24_17000 PF05491 RuvB C-terminal winged helix domain NDY24_17000 PF17864 RuvB AAA lid domain NDY24_17000 PF05496 Holliday junction DNA helicase RuvB P-loop domain NDY24_17005 PF03061 Thioesterase superfamily NDY24_17010 PF01618 MotA/TolQ/ExbB proton channel family NDY24_17015 PF02472 Biopolymer transport protein ExbD/TolR NDY24_17025 PF07676 WD40-like Beta Propeller Repeat NDY24_17025 PF04052 TolB amino-terminal domain NDY24_17030 PF00691 OmpA family NDY24_17040 PF04055 Radical SAM superfamily NDY24_17045 PF00248 Aldo/keto reductase family NDY24_17055 PF06508 Queuosine biosynthesis protein QueC NDY24_17060 PF07536 HWE histidine kinase NDY24_17060 PF13426 PAS domain NDY24_17060 PF13581 Histidine kinase-like ATPase domain NDY24_17080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_17080 PF00672 HAMP domain NDY24_17080 PF02203 Tar ligand binding domain homologue NDY24_17090 PF01479 S4 domain NDY24_17090 PF00849 RNA pseudouridylate synthase NDY24_17105 PF09382 RQC domain NDY24_17105 PF00570 HRDC domain NDY24_17105 PF00271 Helicase conserved C-terminal domain NDY24_17105 PF00270 DEAD/DEAH box helicase NDY24_17105 PF16124 RecQ zinc-binding NDY24_17110 PF00210 Ferritin-like domain NDY24_17135 PF04055 Radical SAM superfamily NDY24_17135 PF13186 Iron-sulfur cluster-binding domain NDY24_17140 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NDY24_17145 PF03070 TENA/THI-4/PQQC family NDY24_17150 PF12706 Beta-lactamase superfamily domain NDY24_17155 PF08042 PqqA family NDY24_17160 PF13291 ACT domain NDY24_17160 PF04607 Region found in RelA / SpoT proteins NDY24_17160 PF02824 TGS domain NDY24_17170 PF00535 Glycosyl transferase family 2 NDY24_17175 PF14814 Bifunctional transglycosylase second domain NDY24_17175 PF00905 Penicillin binding protein transpeptidase domain NDY24_17175 PF00912 Transglycosylase NDY24_17185 PF13307 Helicase C-terminal domain NDY24_17185 PF04851 Type III restriction enzyme, res subunit NDY24_17190 PF00814 Glycoprotease family NDY24_17200 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NDY24_17200 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NDY24_17205 PF00072 Response regulator receiver domain NDY24_17210 PF00072 Response regulator receiver domain NDY24_17215 PF01584 CheW-like domain NDY24_17220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_17220 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NDY24_17225 PF01584 CheW-like domain NDY24_17225 PF02895 Signal transducing histidine kinase, homodimeric domain NDY24_17225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_17225 PF01627 Hpt domain NDY24_17225 PF00072 Response regulator receiver domain NDY24_17230 PF01339 CheB methylesterase NDY24_17230 PF00072 Response regulator receiver domain NDY24_17240 PF13302 Acetyltransferase (GNAT) domain NDY24_17255 PF04542 Sigma-70 region 2 NDY24_17255 PF08281 Sigma-70, region 4 NDY24_17260 PF12034 Domain of unknown function (DUF3520) NDY24_17260 PF00092 von Willebrand factor type A domain NDY24_17260 PF12450 von Willebrand factor NDY24_17265 PF01112 Asparaginase NDY24_17295 PF11867 Domain of unknown function (DUF3387) NDY24_17295 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NDY24_17295 PF18766 SWI2/SNF2 ATPase NDY24_17300 PF01420 Type I restriction modification DNA specificity domain NDY24_17315 PF12161 HsdM N-terminal domain NDY24_17315 PF02384 N-6 DNA Methylase NDY24_17365 PF01301 Glycosyl hydrolases family 35 NDY24_17380 PF02056 Family 4 glycosyl hydrolase NDY24_17380 PF11975 Family 4 glycosyl hydrolase C-terminal domain NDY24_17420 PF02838 Glycosyl hydrolase family 20, domain 2 NDY24_17420 PF07691 PA14 domain NDY24_17420 PF00728 Glycosyl hydrolase family 20, catalytic domain NDY24_17440 PF02685 Glucokinase NDY24_17445 PF04452 RNA methyltransferase NDY24_17450 PF00202 Aminotransferase class-III NDY24_17455 PF00293 NUDIX domain NDY24_17460 PF00459 Inositol monophosphatase family NDY24_17465 PF03819 MazG nucleotide pyrophosphohydrolase domain NDY24_17470 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NDY24_17505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDY24_17505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDY24_17505 PF09317 Domain of unknown function (DUF1974) NDY24_17510 PF00561 alpha/beta hydrolase fold NDY24_17515 PF00440 Bacterial regulatory proteins, tetR family NDY24_17520 PF00593 TonB dependent receptor NDY24_17520 PF07715 TonB-dependent Receptor Plug Domain NDY24_17530 PF01430 Hsp33 protein NDY24_17535 PF00912 Transglycosylase NDY24_17540 PF00535 Glycosyl transferase family 2 NDY24_17545 PF00478 IMP dehydrogenase / GMP reductase domain NDY24_17545 PF00571 CBS domain NDY24_17550 PF01548 Transposase NDY24_17550 PF02371 Transposase IS116/IS110/IS902 family NDY24_17560 PF03006 Haemolysin-III related NDY24_17565 PF00009 Elongation factor Tu GTP binding domain NDY24_17565 PF16658 Class II release factor RF3, C-terminal domain NDY24_17570 PF01551 Peptidase family M23 NDY24_17570 PF08460 Bacterial SH3 domain NDY24_17575 PF00561 alpha/beta hydrolase fold NDY24_17580 PF01053 Cys/Met metabolism PLP-dependent enzyme NDY24_17585 PF00696 Amino acid kinase family NDY24_17585 PF00742 Homoserine dehydrogenase NDY24_17585 PF03447 Homoserine dehydrogenase, NAD binding domain NDY24_17590 PF12697 Alpha/beta hydrolase family NDY24_17595 PF03313 Serine dehydratase alpha chain NDY24_17595 PF03315 Serine dehydratase beta chain NDY24_17605 PF00313 'Cold-shock' DNA-binding domain NDY24_17615 PF01292 Prokaryotic cytochrome b561 NDY24_17620 PF04264 YceI-like domain NDY24_17625 PF01627 Hpt domain NDY24_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_17625 PF00512 His Kinase A (phospho-acceptor) domain NDY24_17625 PF00072 Response regulator receiver domain NDY24_17640 PF07690 Major Facilitator Superfamily NDY24_17645 PF01208 Uroporphyrinogen decarboxylase (URO-D) NDY24_17655 PF01761 3-dehydroquinate synthase NDY24_17660 PF01202 Shikimate kinase NDY24_17665 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NDY24_17665 PF01243 Pyridoxamine 5'-phosphate oxidase NDY24_17670 PF00583 Acetyltransferase (GNAT) family NDY24_17680 PF04012 PspA/IM30 family NDY24_17705 PF03738 Glutathionylspermidine synthase preATP-grasp NDY24_17715 PF00376 MerR family regulatory protein NDY24_17715 PF09278 MerR, DNA binding NDY24_17750 PF12706 Beta-lactamase superfamily domain NDY24_17770 PF00196 Bacterial regulatory proteins, luxR family NDY24_17775 PF00561 alpha/beta hydrolase fold NDY24_17780 PF00544 Pectate lyase NDY24_17785 PF00324 Amino acid permease NDY24_17795 PF01654 Cytochrome bd terminal oxidase subunit I NDY24_17800 PF02322 Cytochrome bd terminal oxidase subunit II NDY24_17805 PF00756 Putative esterase NDY24_17810 PF03448 MgtE intracellular N domain NDY24_17810 PF00571 CBS domain NDY24_17810 PF01769 Divalent cation transporter NDY24_17815 PF02896 PEP-utilising enzyme, TIM barrel domain NDY24_17815 PF00391 PEP-utilising enzyme, mobile domain NDY24_17815 PF05524 PEP-utilising enzyme, N-terminal NDY24_17820 PF00381 PTS HPr component phosphorylation site NDY24_17830 PF03668 P-loop ATPase protein family NDY24_17835 PF07475 HPr Serine kinase C-terminal domain NDY24_17835 PF02603 HPr Serine kinase N terminus NDY24_17840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NDY24_17845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NDY24_17855 PF00005 ABC transporter NDY24_17860 PF03968 OstA-like protein NDY24_17875 PF00571 CBS domain NDY24_17875 PF01380 SIS domain NDY24_17885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDY24_17915 PF00586 AIR synthase related protein, N-terminal domain NDY24_17915 PF02769 AIR synthase related protein, C-terminal domain NDY24_17930 PF00308 Bacterial dnaA protein NDY24_17950 PF00313 'Cold-shock' DNA-binding domain NDY24_17965 PF00899 ThiF family NDY24_17970 PF01026 TatD related DNase NDY24_17985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDY24_17985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDY24_17985 PF02770 Acyl-CoA dehydrogenase, middle domain NDY24_17995 PF02798 Glutathione S-transferase, N-terminal domain NDY24_17995 PF00043 Glutathione S-transferase, C-terminal domain NDY24_18000 PF13537 Glutamine amidotransferase domain NDY24_18000 PF00733 Asparagine synthase NDY24_18005 PF03358 NADPH-dependent FMN reductase NDY24_18010 PF00772 DnaB-like helicase N terminal domain NDY24_18010 PF03796 DnaB-like helicase C terminal domain NDY24_18015 PF00875 DNA photolyase NDY24_18015 PF03441 FAD binding domain of DNA photolyase NDY24_18020 PF00691 OmpA family NDY24_18020 PF05736 OprF membrane domain NDY24_18025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_18025 PF03466 LysR substrate binding domain NDY24_18040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_18040 PF00529 HlyD membrane-fusion protein of T1SS NDY24_18045 PF00873 AcrB/AcrD/AcrF family NDY24_18050 PF00106 short chain dehydrogenase NDY24_18055 PF02321 Outer membrane efflux protein NDY24_18060 PF00990 Diguanylate cyclase, GGDEF domain NDY24_18070 PF00990 Diguanylate cyclase, GGDEF domain NDY24_18170 PF02151 UvrB/uvrC motif NDY24_18170 PF12344 Ultra-violet resistance protein B NDY24_18170 PF17757 UvrB interaction domain NDY24_18170 PF00271 Helicase conserved C-terminal domain NDY24_18170 PF04851 Type III restriction enzyme, res subunit NDY24_18205 PF03743 Bacterial conjugation TrbI-like protein NDY24_18210 PF00437 Type II/IV secretion system protein NDY24_18225 PF05101 Type IV secretory pathway, VirB3-like protein NDY24_18230 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NDY24_18240 PF02824 TGS domain NDY24_18240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDY24_18240 PF03129 Anticodon binding domain NDY24_18240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDY24_18245 PF05198 Translation initiation factor IF-3, N-terminal domain NDY24_18245 PF00707 Translation initiation factor IF-3, C-terminal domain NDY24_18250 PF01632 Ribosomal protein L35 NDY24_18255 PF00453 Ribosomal protein L20 NDY24_18260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NDY24_18260 PF01409 tRNA synthetases class II core domain (F) NDY24_18265 PF03483 B3/4 domain NDY24_18265 PF03484 tRNA synthetase B5 domain NDY24_18265 PF03147 Ferredoxin-fold anticodon binding domain NDY24_18265 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NDY24_18265 PF01588 Putative tRNA binding domain NDY24_18270 PF00216 Bacterial DNA-binding protein NDY24_18275 PF13411 MerR HTH family regulatory protein NDY24_18295 PF02397 Bacterial sugar transferase NDY24_18315 PF13439 Glycosyltransferase Family 4 NDY24_18315 PF00534 Glycosyl transferases group 1 NDY24_18325 PF14667 Polysaccharide biosynthesis C-terminal domain NDY24_18340 PF03808 Glycosyl transferase WecB/TagA/CpsF family NDY24_18355 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDY24_18355 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDY24_18360 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDY24_18360 PF00753 Metallo-beta-lactamase superfamily NDY24_18365 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NDY24_18385 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NDY24_18385 PF02779 Transketolase, pyrimidine binding domain NDY24_18385 PF02780 Transketolase, C-terminal domain NDY24_18395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDY24_18395 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDY24_18395 PF02770 Acyl-CoA dehydrogenase, middle domain NDY24_18395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDY24_18405 PF08212 Lipocalin-like domain NDY24_18430 PF00893 Small Multidrug Resistance protein NDY24_18435 PF00072 Response regulator receiver domain NDY24_18435 PF13426 PAS domain NDY24_18435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_18440 PF04362 Bacterial Fe(2+) trafficking NDY24_18445 PF14815 NUDIX domain NDY24_18445 PF00730 HhH-GPD superfamily base excision DNA repair protein NDY24_18445 PF00633 Helix-hairpin-helix motif NDY24_18445 PF10576 Iron-sulfur binding domain of endonuclease III NDY24_18460 PF05544 Proline racemase NDY24_18480 PF00701 Dihydrodipicolinate synthetase family NDY24_18505 PF13520 Amino acid permease NDY24_18535 PF00082 Subtilase family NDY24_18535 PF09286 Pro-kumamolisin, activation domain NDY24_18545 PF00593 TonB dependent receptor NDY24_18545 PF07715 TonB-dependent Receptor Plug Domain NDY24_18565 PF07715 TonB-dependent Receptor Plug Domain NDY24_18565 PF00593 TonB dependent receptor NDY24_18575 PF00183 Hsp90 protein NDY24_18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_18585 PF01467 Cytidylyltransferase-like NDY24_18595 PF00037 4Fe-4S binding domain NDY24_18655 PF01702 Queuine tRNA-ribosyltransferase NDY24_18660 PF02699 Preprotein translocase subunit NDY24_18665 PF02355 Protein export membrane protein NDY24_18665 PF13721 SecD export protein N-terminal TM region NDY24_18665 PF07549 SecD/SecF GG Motif NDY24_18670 PF07549 SecD/SecF GG Motif NDY24_18670 PF02355 Protein export membrane protein NDY24_18720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NDY24_18725 PF00294 pfkB family carbohydrate kinase NDY24_18730 PF02896 PEP-utilising enzyme, TIM barrel domain NDY24_18730 PF05524 PEP-utilising enzyme, N-terminal NDY24_18730 PF00391 PEP-utilising enzyme, mobile domain NDY24_18730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NDY24_18730 PF00381 PTS HPr component phosphorylation site NDY24_18735 PF00356 Bacterial regulatory proteins, lacI family NDY24_18740 PF00873 AcrB/AcrD/AcrF family NDY24_18755 PF05088 Bacterial NAD-glutamate dehydrogenase NDY24_18760 PF08659 KR domain NDY24_18760 PF00698 Acyl transferase domain NDY24_18760 PF14765 Polyketide synthase dehydratase NDY24_18760 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_18760 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_18760 PF00550 Phosphopantetheine attachment site NDY24_18760 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_18760 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_18765 PF00106 short chain dehydrogenase NDY24_18770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDY24_18775 PF00440 Bacterial regulatory proteins, tetR family NDY24_18780 PF00106 short chain dehydrogenase NDY24_18785 PF00107 Zinc-binding dehydrogenase NDY24_18785 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_18795 PF07690 Major Facilitator Superfamily NDY24_18800 PF00072 Response regulator receiver domain NDY24_18805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_18805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDY24_18805 PF01627 Hpt domain NDY24_18805 PF00672 HAMP domain NDY24_18805 PF00512 His Kinase A (phospho-acceptor) domain NDY24_18805 PF00072 Response regulator receiver domain NDY24_18810 PF04286 Protein of unknown function (DUF445) NDY24_18835 PF00202 Aminotransferase class-III NDY24_18840 PF07690 Major Facilitator Superfamily NDY24_18845 PF02634 FdhD/NarQ family NDY24_18850 PF00384 Molybdopterin oxidoreductase NDY24_18860 PF07690 Major Facilitator Superfamily NDY24_18860 PF00083 Sugar (and other) transporter NDY24_18865 PF00990 Diguanylate cyclase, GGDEF domain NDY24_18865 PF00072 Response regulator receiver domain NDY24_18870 PF01266 FAD dependent oxidoreductase NDY24_18875 PF00120 Glutamine synthetase, catalytic domain NDY24_18880 PF07722 Peptidase C26 NDY24_18885 PF00120 Glutamine synthetase, catalytic domain NDY24_18890 PF00202 Aminotransferase class-III NDY24_18895 PF13416 Bacterial extracellular solute-binding protein NDY24_18900 PF13533 Biotin-lipoyl like NDY24_18905 PF07690 Major Facilitator Superfamily NDY24_18930 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_18945 PF00171 Aldehyde dehydrogenase family NDY24_18960 PF00571 CBS domain NDY24_18960 PF03471 Transporter associated domain NDY24_18970 PF02130 Uncharacterized protein family UPF0054 NDY24_18980 PF04055 Radical SAM superfamily NDY24_18980 PF01938 TRAM domain NDY24_18980 PF00919 Uncharacterized protein family UPF0004 NDY24_19000 PF00355 Rieske [2Fe-2S] domain NDY24_19000 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NDY24_19005 PF00033 Cytochrome b/b6/petB NDY24_19005 PF00032 Cytochrome b(C-terminal)/b6/petD NDY24_19015 PF00043 Glutathione S-transferase, C-terminal domain NDY24_19015 PF02798 Glutathione S-transferase, N-terminal domain NDY24_19020 PF04386 Stringent starvation protein B NDY24_19035 PF02245 Methylpurine-DNA glycosylase (MPG) NDY24_19040 PF02245 Methylpurine-DNA glycosylase (MPG) NDY24_19050 PF01584 CheW-like domain NDY24_19055 PF07694 5TMR of 5TMR-LYT NDY24_19055 PF00990 Diguanylate cyclase, GGDEF domain NDY24_19080 PF00570 HRDC domain NDY24_19080 PF01612 3'-5' exonuclease NDY24_19085 PF03781 Sulfatase-modifying factor enzyme 1 NDY24_19095 PF02601 Exonuclease VII, large subunit NDY24_19095 PF13742 OB-fold nucleic acid binding domain NDY24_19100 PF08331 Domain of unknown function (DUF1730) NDY24_19105 PF01256 Carbohydrate kinase NDY24_19105 PF03853 YjeF-related protein N-terminus NDY24_19120 PF01119 DNA mismatch repair protein, C-terminal domain NDY24_19120 PF08676 MutL C terminal dimerisation domain NDY24_19135 PF05233 PHB accumulation regulatory domain NDY24_19135 PF07879 PHB/PHA accumulation regulator DNA-binding domain NDY24_19140 PF00106 short chain dehydrogenase NDY24_19145 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDY24_19150 PF01435 Peptidase family M48 NDY24_19155 PF03707 Bacterial signalling protein N terminal repeat NDY24_19155 PF00990 Diguanylate cyclase, GGDEF domain NDY24_19155 PF00563 EAL domain NDY24_19165 PF07152 YaeQ protein NDY24_19170 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NDY24_19175 PF00313 'Cold-shock' DNA-binding domain NDY24_19180 PF14497 Glutathione S-transferase, C-terminal domain NDY24_19180 PF02798 Glutathione S-transferase, N-terminal domain NDY24_19190 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NDY24_19195 PF00156 Phosphoribosyl transferase domain NDY24_19200 PF00271 Helicase conserved C-terminal domain NDY24_19200 PF00270 DEAD/DEAH box helicase NDY24_19200 PF03880 DbpA RNA binding domain NDY24_19205 PF00005 ABC transporter NDY24_19205 PF16326 ABC transporter C-terminal domain NDY24_19205 PF12848 ABC transporter NDY24_19215 PF00545 ribonuclease NDY24_19220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDY24_19220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDY24_19225 PF00459 Inositol monophosphatase family NDY24_19230 PF00588 SpoU rRNA Methylase family NDY24_19250 PF09285 Elongation factor P, C-terminal NDY24_19250 PF01132 Elongation factor P (EF-P) OB domain NDY24_19250 PF08207 Elongation factor P (EF-P) KOW-like domain NDY24_19260 PF01979 Amidohydrolase family NDY24_19280 PF00295 Glycosyl hydrolases family 28 NDY24_19325 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NDY24_19330 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NDY24_19340 PF08460 Bacterial SH3 domain NDY24_19340 PF01551 Peptidase family M23 NDY24_19345 PF01979 Amidohydrolase family NDY24_19350 PF01809 Putative membrane protein insertion efficiency factor NDY24_19355 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDY24_19365 PF02657 Fe-S metabolism associated domain NDY24_19370 PF01406 tRNA synthetases class I (C) catalytic domain NDY24_19370 PF09190 DALR domain NDY24_19380 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDY24_19380 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDY24_19385 PF00764 Arginosuccinate synthase NDY24_19390 PF07687 Peptidase dimerisation domain NDY24_19390 PF01546 Peptidase family M20/M25/M40 NDY24_19395 PF00696 Amino acid kinase family NDY24_19395 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase NDY24_19405 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDY24_19410 PF00206 Lyase NDY24_19425 PF00696 Amino acid kinase family NDY24_19425 PF01472 PUA domain NDY24_19430 PF00171 Aldehyde dehydrogenase family NDY24_19435 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NDY24_19435 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain NDY24_19460 PF01654 Cytochrome bd terminal oxidase subunit I NDY24_19465 PF00664 ABC transporter transmembrane region NDY24_19465 PF00005 ABC transporter NDY24_19495 PF03918 Cytochrome C biogenesis protein NDY24_19500 PF08534 Redoxin NDY24_19510 PF03100 CcmE NDY24_19520 PF01578 Cytochrome C assembly protein NDY24_19525 PF03379 CcmB protein NDY24_19530 PF00005 ABC transporter NDY24_19535 PF00155 Aminotransferase class I and II NDY24_19540 PF00795 Carbon-nitrogen hydrolase NDY24_19555 PF01479 S4 domain NDY24_19555 PF00849 RNA pseudouridylate synthase NDY24_19560 PF04079 Segregation and condensation complex subunit ScpB NDY24_19565 PF02616 Segregation and condensation protein ScpA NDY24_19570 PF03795 YCII-related domain NDY24_19580 PF00356 Bacterial regulatory proteins, lacI family NDY24_19595 PF01547 Bacterial extracellular solute-binding protein NDY24_19600 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_19605 PF00528 Binding-protein-dependent transport system inner membrane component NDY24_19630 PF00795 Carbon-nitrogen hydrolase NDY24_19635 PF04371 Porphyromonas-type peptidyl-arginine deiminase NDY24_19645 PF00444 Ribosomal protein L36 NDY24_19650 PF02224 Cytidylate kinase NDY24_19655 PF00575 S1 RNA binding domain NDY24_19660 PF00216 Bacterial DNA-binding protein NDY24_19670 PF18073 Rubredoxin metal binding domain NDY24_19675 PF00953 Glycosyl transferase family 4 NDY24_19680 PF02719 Polysaccharide biosynthesis protein NDY24_19685 PF00483 Nucleotidyl transferase NDY24_19690 PF02254 TrkA-N domain NDY24_19690 PF00999 Sodium/hydrogen exchanger family NDY24_19700 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NDY24_19700 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NDY24_19705 PF00571 CBS domain NDY24_19705 PF00478 IMP dehydrogenase / GMP reductase domain NDY24_19710 PF00117 Glutamine amidotransferase class-I NDY24_19710 PF00958 GMP synthase C terminal domain NDY24_19710 PF02540 NAD synthase NDY24_19715 PF13356 Arm DNA-binding domain NDY24_19715 PF00589 Phage integrase family NDY24_19850 PF00672 HAMP domain NDY24_19850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_19850 PF02203 Tar ligand binding domain homologue NDY24_19855 PF01494 FAD binding domain NDY24_19865 PF08448 PAS fold NDY24_19865 PF00512 His Kinase A (phospho-acceptor) domain NDY24_19865 PF13188 PAS domain NDY24_19865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_19865 PF00072 Response regulator receiver domain NDY24_19870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_19870 PF00672 HAMP domain NDY24_19870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDY24_19870 PF00072 Response regulator receiver domain NDY24_19870 PF01627 Hpt domain NDY24_19870 PF00512 His Kinase A (phospho-acceptor) domain NDY24_19875 PF06745 KaiC NDY24_19880 PF00072 Response regulator receiver domain NDY24_19880 PF13426 PAS domain NDY24_19880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_19890 PF03918 Cytochrome C biogenesis protein NDY24_19895 PF08534 Redoxin NDY24_19900 PF01578 Cytochrome C assembly protein NDY24_19900 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NDY24_19905 PF03100 CcmE NDY24_19910 PF04995 Heme exporter protein D (CcmD) NDY24_19915 PF01578 Cytochrome C assembly protein NDY24_19920 PF00082 Subtilase family NDY24_19930 PF04542 Sigma-70 region 2 NDY24_19930 PF08281 Sigma-70, region 4 NDY24_19940 PF00034 Cytochrome c NDY24_19955 PF05523 WxcM-like, C-terminal NDY24_19975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDY24_19980 PF01943 Polysaccharide biosynthesis protein NDY24_19985 PF00535 Glycosyl transferase family 2 NDY24_20000 PF08241 Methyltransferase domain NDY24_20020 PF00534 Glycosyl transferases group 1 NDY24_20020 PF13579 Glycosyl transferase 4-like domain NDY24_20035 PF00005 ABC transporter NDY24_20040 PF00005 ABC transporter NDY24_20040 PF00664 ABC transporter transmembrane region NDY24_20045 PF07690 Major Facilitator Superfamily NDY24_20050 PF00296 Luciferase-like monooxygenase NDY24_20065 PF01595 Cyclin M transmembrane N-terminal domain NDY24_20065 PF03471 Transporter associated domain NDY24_20065 PF00571 CBS domain NDY24_20075 PF01384 Phosphate transporter family NDY24_20090 PF00204 DNA gyrase B NDY24_20090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_20090 PF01751 Toprim domain NDY24_20090 PF00986 DNA gyrase B subunit, carboxyl terminus NDY24_20100 PF06418 CTP synthase N-terminus NDY24_20100 PF00117 Glutamine amidotransferase class-I NDY24_20105 PF00793 DAHP synthetase I family NDY24_20115 PF00113 Enolase, C-terminal TIM barrel domain NDY24_20115 PF03952 Enolase, N-terminal domain NDY24_20120 PF04977 Septum formation initiator NDY24_20125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NDY24_20130 PF02542 YgbB family NDY24_20135 PF01142 tRNA pseudouridine synthase D (TruD) NDY24_20140 PF01713 Smr domain NDY24_20145 PF01975 Survival protein SurE NDY24_20155 PF09335 SNARE associated Golgi protein NDY24_20160 PF01476 LysM domain NDY24_20160 PF01551 Peptidase family M23 NDY24_20170 PF01985 CRS1 / YhbY (CRM) domain NDY24_20175 PF01728 FtsJ-like methyltransferase NDY24_20180 PF00004 ATPase family associated with various cellular activities (AAA) NDY24_20180 PF06480 FtsH Extracellular NDY24_20180 PF01434 Peptidase family M41 NDY24_20180 PF17862 AAA+ lid domain NDY24_20185 PF00809 Pterin binding enzyme NDY24_20195 PF17209 Hfq protein NDY24_20200 PF16360 GTP-binding GTPase Middle Region NDY24_20200 PF13167 GTP-binding GTPase N-terminal NDY24_20200 PF01926 50S ribosome-binding GTPase NDY24_20205 PF02464 Competence-damaged protein NDY24_20210 PF07715 TonB-dependent Receptor Plug Domain NDY24_20210 PF00593 TonB dependent receptor NDY24_20215 PF03109 ABC1 family NDY24_20220 PF01726 LexA DNA binding domain NDY24_20220 PF00717 Peptidase S24-like NDY24_20225 PF00154 recA bacterial DNA recombination protein NDY24_20230 PF02631 RecX family NDY24_20235 PF02272 DHHA1 domain NDY24_20235 PF01411 tRNA synthetases class II (A) NDY24_20235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDY24_20240 PF02599 Global regulator protein family NDY24_20250 PF08447 PAS fold NDY24_20250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_20250 PF13426 PAS domain NDY24_20255 PF02678 Pirin NDY24_20255 PF17954 Quercetinase C-terminal cupin domain NDY24_20260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_20260 PF03466 LysR substrate binding domain NDY24_20280 PF08543 Phosphomethylpyrimidine kinase NDY24_20280 PF02581 Thiamine monophosphate synthase NDY24_20295 PF13638 PIN domain NDY24_20295 PF02562 PhoH-like protein NDY24_20300 PF00578 AhpC/TSA family NDY24_20315 PF00701 Dihydrodipicolinate synthetase family NDY24_20325 PF00037 4Fe-4S binding domain NDY24_20325 PF11953 Domain of unknown function (DUF3470) NDY24_20335 PF08450 SMP-30/Gluconolactonase/LRE-like region NDY24_20340 PF13378 Enolase C-terminal domain-like NDY24_20340 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDY24_20345 PF01081 KDPG and KHG aldolase NDY24_20350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_20350 PF03466 LysR substrate binding domain NDY24_20365 PF00942 Cellulose binding domain NDY24_20365 PF03442 Carbohydrate binding domain X2 NDY24_20380 PF16338 Domain of unknown function (DUF4968) NDY24_20380 PF17137 Domain of unknown function (DUF5110) NDY24_20380 PF01055 Glycosyl hydrolases family 31 NDY24_20390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDY24_20390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDY24_20400 PF00083 Sugar (and other) transporter NDY24_20425 PF01520 N-acetylmuramoyl-L-alanine amidase NDY24_20430 PF02649 Type I GTP cyclohydrolase folE2 NDY24_20440 PF12626 Polymerase A arginine-rich C-terminus NDY24_20440 PF01743 Poly A polymerase head domain NDY24_20440 PF12627 Probable RNA and SrmB- binding site of polymerase A NDY24_20445 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDY24_20450 PF02548 Ketopantoate hydroxymethyltransferase NDY24_20455 PF02569 Pantoate-beta-alanine ligase NDY24_20460 PF02261 Aspartate decarboxylase NDY24_20465 PF00342 Phosphoglucose isomerase NDY24_20490 PF00474 Sodium:solute symporter family NDY24_20495 PF00360 Phytochrome region NDY24_20495 PF00990 Diguanylate cyclase, GGDEF domain NDY24_20495 PF01590 GAF domain NDY24_20495 PF00563 EAL domain NDY24_20500 PF00150 Cellulase (glycosyl hydrolase family 5) NDY24_20500 PF02013 Cellulose or protein binding domain NDY24_20505 PF00072 Response regulator receiver domain NDY24_20515 PF04551 GcpE protein NDY24_20520 PF01569 PAP2 superfamily NDY24_20530 PF07690 Major Facilitator Superfamily NDY24_20540 PF00892 EamA-like transporter family NDY24_20545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NDY24_20545 PF01565 FAD binding domain NDY24_20565 PF00171 Aldehyde dehydrogenase family NDY24_20575 PF15606 Bacterial toxin 34 NDY24_20575 PF03527 RHS protein NDY24_20575 PF05593 RHS Repeat NDY24_20610 PF03073 TspO/MBR family NDY24_20615 PF00696 Amino acid kinase family NDY24_20615 PF01842 ACT domain NDY24_20615 PF13840 ACT domain NDY24_20615 PF00742 Homoserine dehydrogenase NDY24_20615 PF03447 Homoserine dehydrogenase, NAD binding domain NDY24_20620 PF08544 GHMP kinases C terminal NDY24_20620 PF00288 GHMP kinases N terminal domain NDY24_20630 PF00291 Pyridoxal-phosphate dependent enzyme NDY24_20630 PF14821 Threonine synthase N terminus NDY24_20645 PF00027 Cyclic nucleotide-binding domain NDY24_20645 PF13545 Crp-like helix-turn-helix domain NDY24_20650 PF13393 Histidyl-tRNA synthetase NDY24_20650 PF03129 Anticodon binding domain NDY24_20660 PF01634 ATP phosphoribosyltransferase NDY24_20660 PF08029 HisG, C-terminal domain NDY24_20665 PF00815 Histidinol dehydrogenase NDY24_20670 PF00155 Aminotransferase class I and II NDY24_20675 PF00475 Imidazoleglycerol-phosphate dehydratase NDY24_20680 PF00117 Glutamine amidotransferase class-I NDY24_20685 PF00977 Histidine biosynthesis protein NDY24_20690 PF00977 Histidine biosynthesis protein NDY24_20695 PF01502 Phosphoribosyl-AMP cyclohydrolase NDY24_20695 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NDY24_20715 PF03079 ARD/ARD' family NDY24_20720 PF00596 Class II Aldolase and Adducin N-terminal domain NDY24_20725 PF13520 Amino acid permease NDY24_20730 PF13520 Amino acid permease NDY24_20740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDY24_20740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDY24_20745 PF01565 FAD binding domain NDY24_20745 PF02913 FAD linked oxidases, C-terminal domain NDY24_20765 PF09285 Elongation factor P, C-terminal NDY24_20765 PF01132 Elongation factor P (EF-P) OB domain NDY24_20765 PF08207 Elongation factor P (EF-P) KOW-like domain NDY24_20770 PF00106 short chain dehydrogenase NDY24_20775 PF00682 HMGL-like NDY24_20790 PF07664 Ferrous iron transport protein B C terminus NDY24_20790 PF02421 Ferrous iron transport protein B NDY24_20790 PF07670 Nucleoside recognition NDY24_20805 PF01113 Dihydrodipicolinate reductase, N-terminus NDY24_20805 PF05173 Dihydrodipicolinate reductase, C-terminus NDY24_20810 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDY24_20810 PF00117 Glutamine amidotransferase class-I NDY24_20850 PF04397 LytTr DNA-binding domain NDY24_20850 PF00072 Response regulator receiver domain NDY24_20860 PF00152 tRNA synthetases class II (D, K and N) NDY24_20860 PF01336 OB-fold nucleic acid binding domain NDY24_20865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_20865 PF01627 Hpt domain NDY24_20865 PF00072 Response regulator receiver domain NDY24_20865 PF00512 His Kinase A (phospho-acceptor) domain NDY24_20870 PF00072 Response regulator receiver domain NDY24_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_20870 PF00512 His Kinase A (phospho-acceptor) domain NDY24_20870 PF01627 Hpt domain NDY24_20875 PF00378 Enoyl-CoA hydratase/isomerase NDY24_20880 PF00501 AMP-binding enzyme NDY24_20880 PF13193 AMP-binding enzyme C-terminal domain NDY24_20905 PF11791 Aconitate B N-terminal domain NDY24_20905 PF00330 Aconitase family (aconitate hydratase) NDY24_20905 PF06434 Aconitate hydratase 2 N-terminus NDY24_20910 PF00561 alpha/beta hydrolase fold NDY24_20920 PF00563 EAL domain NDY24_20920 PF00990 Diguanylate cyclase, GGDEF domain NDY24_20920 PF03707 Bacterial signalling protein N terminal repeat NDY24_20925 PF01339 CheB methylesterase NDY24_20925 PF00072 Response regulator receiver domain NDY24_20930 PF03975 CheD chemotactic sensory transduction NDY24_20935 PF01739 CheR methyltransferase, SAM binding domain NDY24_20935 PF03705 CheR methyltransferase, all-alpha domain NDY24_20940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_20940 PF02203 Tar ligand binding domain homologue NDY24_20940 PF00672 HAMP domain NDY24_20950 PF01584 CheW-like domain NDY24_20955 PF07317 Flagellar regulator YcgR NDY24_20955 PF07238 PilZ domain NDY24_20960 PF02203 Tar ligand binding domain homologue NDY24_20960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_20960 PF00672 HAMP domain NDY24_20980 PF00672 HAMP domain NDY24_20980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_20980 PF02203 Tar ligand binding domain homologue NDY24_20985 PF00672 HAMP domain NDY24_20985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_21015 PF02203 Tar ligand binding domain homologue NDY24_21015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_21015 PF00672 HAMP domain NDY24_21020 PF01584 CheW-like domain NDY24_21020 PF09078 CheY binding NDY24_21020 PF02895 Signal transducing histidine kinase, homodimeric domain NDY24_21020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_21020 PF01627 Hpt domain NDY24_21025 PF00072 Response regulator receiver domain NDY24_21035 PF01584 CheW-like domain NDY24_21040 PF13614 AAA domain NDY24_21045 PF00691 OmpA family NDY24_21045 PF13677 Membrane MotB of proton-channel complex MotA/MotB NDY24_21050 PF01618 MotA/TolQ/ExbB proton channel family NDY24_21060 PF01381 Helix-turn-helix NDY24_21070 PF07715 TonB-dependent Receptor Plug Domain NDY24_21070 PF00593 TonB dependent receptor NDY24_21105 PF00425 chorismate binding enzyme NDY24_21115 PF00975 Thioesterase domain NDY24_21130 PF00501 AMP-binding enzyme NDY24_21130 PF00550 Phosphopantetheine attachment site NDY24_21130 PF08242 Methyltransferase domain NDY24_21130 PF00668 Condensation domain NDY24_21145 PF08242 Methyltransferase domain NDY24_21145 PF00501 AMP-binding enzyme NDY24_21145 PF00550 Phosphopantetheine attachment site NDY24_21145 PF00668 Condensation domain NDY24_21155 PF14765 Polyketide synthase dehydratase NDY24_21155 PF00550 Phosphopantetheine attachment site NDY24_21155 PF08242 Methyltransferase domain NDY24_21155 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_21155 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_21155 PF08659 KR domain NDY24_21155 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_21165 PF00698 Acyl transferase domain NDY24_21165 PF08240 Alcohol dehydrogenase GroES-like domain NDY24_21165 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_21165 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_21165 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_21165 PF00550 Phosphopantetheine attachment site NDY24_21165 PF14765 Polyketide synthase dehydratase NDY24_21165 PF08659 KR domain NDY24_21170 PF02801 Beta-ketoacyl synthase, C-terminal domain NDY24_21170 PF00109 Beta-ketoacyl synthase, N-terminal domain NDY24_21170 PF00550 Phosphopantetheine attachment site NDY24_21170 PF00668 Condensation domain NDY24_21170 PF16197 Ketoacyl-synthetase C-terminal extension NDY24_21170 PF00698 Acyl transferase domain NDY24_21185 PF00501 AMP-binding enzyme NDY24_21185 PF00668 Condensation domain NDY24_21185 PF08242 Methyltransferase domain NDY24_21185 PF00550 Phosphopantetheine attachment site NDY24_21190 PF00550 Phosphopantetheine attachment site NDY24_21190 PF08242 Methyltransferase domain NDY24_21190 PF00668 Condensation domain NDY24_21190 PF00501 AMP-binding enzyme NDY24_21195 PF00550 Phosphopantetheine attachment site NDY24_21195 PF00668 Condensation domain NDY24_21195 PF08242 Methyltransferase domain NDY24_21195 PF00501 AMP-binding enzyme NDY24_21200 PF00550 Phosphopantetheine attachment site NDY24_21200 PF08242 Methyltransferase domain NDY24_21200 PF00668 Condensation domain NDY24_21200 PF00501 AMP-binding enzyme NDY24_21220 PF07715 TonB-dependent Receptor Plug Domain NDY24_21220 PF00593 TonB dependent receptor NDY24_21240 PF00005 ABC transporter NDY24_21240 PF08021 Siderophore-interacting FAD-binding domain NDY24_21240 PF04954 Siderophore-interacting protein NDY24_21240 PF00664 ABC transporter transmembrane region NDY24_21245 PF00005 ABC transporter NDY24_21245 PF00664 ABC transporter transmembrane region NDY24_21250 PF00664 ABC transporter transmembrane region NDY24_21250 PF00005 ABC transporter NDY24_21265 PF00664 ABC transporter transmembrane region NDY24_21265 PF00005 ABC transporter NDY24_21275 PF04344 Chemotaxis phosphatase, CheZ NDY24_21280 PF00072 Response regulator receiver domain NDY24_21285 PF04542 Sigma-70 region 2 NDY24_21285 PF04539 Sigma-70 region 3 NDY24_21285 PF04545 Sigma-70, region 4 NDY24_21300 PF00771 FHIPEP family NDY24_21305 PF01312 FlhB HrpN YscU SpaS Family NDY24_21315 PF00990 Diguanylate cyclase, GGDEF domain NDY24_21320 PF00563 EAL domain NDY24_21320 PF00990 Diguanylate cyclase, GGDEF domain NDY24_21320 PF03707 Bacterial signalling protein N terminal repeat NDY24_21320 PF13188 PAS domain NDY24_21325 PF01311 Bacterial export proteins, family 1 NDY24_21330 PF01313 Bacterial export proteins, family 3 NDY24_21335 PF00813 FliP family NDY24_21340 PF04347 Flagellar biosynthesis protein, FliO NDY24_21345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NDY24_21350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NDY24_21350 PF02154 Flagellar motor switch protein FliM NDY24_21370 PF18269 T3SS EscN ATPase C-terminal domain NDY24_21370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDY24_21380 PF14842 FliG N-terminal domain NDY24_21380 PF01706 FliG C-terminal domain NDY24_21380 PF14841 FliG middle domain NDY24_21385 PF08345 Flagellar M-ring protein C-terminal NDY24_21385 PF01514 Secretory protein of YscJ/FliF family NDY24_21390 PF02049 Flagellar hook-basal body complex protein FliE NDY24_21445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDY24_21445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDY24_21460 PF02954 Bacterial regulatory protein, Fis family NDY24_21460 PF00158 Sigma-54 interaction domain NDY24_21460 PF06490 Flagellar regulatory protein FleQ NDY24_21465 PF01339 CheB methylesterase NDY24_21465 PF00072 Response regulator receiver domain NDY24_21470 PF00309 Sigma-54 factor, Activator interacting domain (AID) NDY24_21470 PF04963 Sigma-54 factor, core binding domain NDY24_21470 PF04552 Sigma-54, DNA binding domain NDY24_21475 PF00196 Bacterial regulatory proteins, luxR family NDY24_21475 PF00072 Response regulator receiver domain NDY24_21490 PF02561 Flagellar protein FliS NDY24_21495 PF02465 Flagellar hook-associated protein 2 N-terminus NDY24_21495 PF07195 Flagellar hook-associated protein 2 C-terminus NDY24_21495 PF07196 Flagellin hook IN motif NDY24_21500 PF00700 Bacterial flagellin C-terminal helical region NDY24_21500 PF00669 Bacterial flagellin N-terminal helical region NDY24_21510 PF07196 Flagellin hook IN motif NDY24_21510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDY24_21515 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NDY24_21515 PF10135 Rod binding protein NDY24_21520 PF02119 Flagellar P-ring protein NDY24_21525 PF02107 Flagellar L-ring protein NDY24_21535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDY24_21535 PF00460 Flagella basal body rod protein NDY24_21540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDY24_21540 PF00460 Flagella basal body rod protein NDY24_21540 PF07559 Flagellar basal body protein FlaE NDY24_21545 PF03963 Flagellar hook capping protein - N-terminal region NDY24_21550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDY24_21550 PF00460 Flagella basal body rod protein NDY24_21560 PF00072 Response regulator receiver domain NDY24_21560 PF01584 CheW-like domain NDY24_21580 PF00512 His Kinase A (phospho-acceptor) domain NDY24_21580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_21585 PF03707 Bacterial signalling protein N terminal repeat NDY24_21585 PF00990 Diguanylate cyclase, GGDEF domain NDY24_21585 PF00563 EAL domain NDY24_21590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_21590 PF07730 Histidine kinase NDY24_21595 PF00990 Diguanylate cyclase, GGDEF domain NDY24_21595 PF03707 Bacterial signalling protein N terminal repeat NDY24_21595 PF00563 EAL domain NDY24_21610 PF00672 HAMP domain NDY24_21610 PF12729 Four helix bundle sensory module for signal transduction NDY24_21610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_21615 PF04356 Protein of unknown function (DUF489) NDY24_21625 PF00293 NUDIX domain NDY24_21630 PF02617 ATP-dependent Clp protease adaptor protein ClpS NDY24_21635 PF00004 ATPase family associated with various cellular activities (AAA) NDY24_21635 PF07724 AAA domain (Cdc48 subfamily) NDY24_21635 PF17871 AAA lid domain NDY24_21635 PF02861 Clp amino terminal domain, pathogenicity island component NDY24_21635 PF10431 C-terminal, D2-small domain, of ClpB protein NDY24_21640 PF01176 Translation initiation factor 1A / IF-1 NDY24_21645 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NDY24_21655 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_21660 PF09397 Ftsk gamma domain NDY24_21660 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NDY24_21660 PF01580 FtsK/SpoIIIE family NDY24_21660 PF17854 FtsK alpha domain NDY24_21670 PF03548 Outer membrane lipoprotein carrier protein LolA NDY24_21675 PF00004 ATPase family associated with various cellular activities (AAA) NDY24_21675 PF16193 AAA C-terminal domain NDY24_21675 PF12002 MgsA AAA+ ATPase C terminal NDY24_21680 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NDY24_21685 PF02803 Thiolase, C-terminal domain NDY24_21685 PF00108 Thiolase, N-terminal domain NDY24_21690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDY24_21690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDY24_21690 PF00378 Enoyl-CoA hydratase/isomerase NDY24_21700 PF00334 Nucleoside diphosphate kinase NDY24_21705 PF04055 Radical SAM superfamily NDY24_21715 PF13464 Domain of unknown function (DUF4115) NDY24_21725 PF01011 PQQ enzyme repeat NDY24_21725 PF13360 PQQ-like domain NDY24_21730 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NDY24_21730 PF01926 50S ribosome-binding GTPase NDY24_21735 PF00994 Probable molybdopterin binding domain NDY24_21735 PF03454 MoeA C-terminal region (domain IV) NDY24_21735 PF03453 MoeA N-terminal region (domain I and II) NDY24_21740 PF00899 ThiF family NDY24_21750 PF03372 Endonuclease/Exonuclease/phosphatase family NDY24_21760 PF03453 MoeA N-terminal region (domain I and II) NDY24_21760 PF03454 MoeA C-terminal region (domain IV) NDY24_21760 PF00994 Probable molybdopterin binding domain NDY24_21765 PF12804 MobA-like NTP transferase domain NDY24_21775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDY24_21775 PF14824 Sirohaem biosynthesis protein central NDY24_21775 PF10414 Sirohaem synthase dimerisation region NDY24_21780 PF03861 ANTAR domain NDY24_21780 PF00072 Response regulator receiver domain NDY24_21790 PF07690 Major Facilitator Superfamily NDY24_21795 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDY24_21795 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDY24_21795 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDY24_21795 PF04324 BFD-like [2Fe-2S] binding domain NDY24_21795 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDY24_21800 PF00355 Rieske [2Fe-2S] domain NDY24_21800 PF11723 Homotrimeric ring hydroxylase NDY24_21805 PF00384 Molybdopterin oxidoreductase NDY24_21805 PF04324 BFD-like [2Fe-2S] binding domain NDY24_21805 PF01568 Molydopterin dinucleotide binding domain NDY24_21805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDY24_21810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDY24_21825 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NDY24_21835 PF00483 Nucleotidyl transferase NDY24_21845 PF01266 FAD dependent oxidoreductase NDY24_21850 PF01609 Transposase DDE domain NDY24_21850 PF05598 Transposase domain (DUF772) NDY24_21865 PF05974 Domain of unknown function (DUF892) NDY24_21880 PF08448 PAS fold NDY24_21880 PF08447 PAS fold NDY24_21880 PF00990 Diguanylate cyclase, GGDEF domain NDY24_21880 PF00563 EAL domain NDY24_21885 PF12951 Passenger-associated-transport-repeat NDY24_21900 PF00512 His Kinase A (phospho-acceptor) domain NDY24_21900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_21900 PF00672 HAMP domain NDY24_21915 PF06629 MltA-interacting protein MipA NDY24_21925 PF01494 FAD binding domain NDY24_21955 PF00072 Response regulator receiver domain NDY24_21955 PF13426 PAS domain NDY24_21955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_21960 PF00512 His Kinase A (phospho-acceptor) domain NDY24_21960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_21960 PF00672 HAMP domain NDY24_21980 PF07995 Glucose / Sorbosone dehydrogenase NDY24_21995 PF01062 Bestrophin, RFP-TM, chloride channel NDY24_22000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDY24_22000 PF00512 His Kinase A (phospho-acceptor) domain NDY24_22005 PF00196 Bacterial regulatory proteins, luxR family NDY24_22005 PF00072 Response regulator receiver domain NDY24_22010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDY24_22035 PF00672 HAMP domain NDY24_22035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDY24_22035 PF02203 Tar ligand binding domain homologue NDY24_22045 PF03466 LysR substrate binding domain NDY24_22045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDY24_22080 PF00005 ABC transporter NDY24_22080 PF12848 ABC transporter NDY24_22095 PF09278 MerR, DNA binding NDY24_22095 PF00376 MerR family regulatory protein NDY24_22110 PF11740 Plasmid replication region DNA-binding N-term NDY24_22140 PF02303 Helix-destabilising protein NDY24_22225 PF02303 Helix-destabilising protein NDY24_22250 PF07516 SecA Wing and Scaffold domain NDY24_22250 PF01043 SecA preprotein cross-linking domain NDY24_22250 PF07517 SecA DEAD-like domain NDY24_22250 PF02810 SEC-C motif NDY24_22260 PF01106 NifU-like domain NDY24_22265 PF01329 Pterin 4 alpha carbinolamine dehydratase NDY24_22280 PF01479 S4 domain NDY24_22280 PF00849 RNA pseudouridylate synthase NDY24_22290 PF00196 Bacterial regulatory proteins, luxR family NDY24_22290 PF00072 Response regulator receiver domain NDY24_22295 PF17773 UPF0176 acylphosphatase like domain NDY24_22295 PF00581 Rhodanese-like domain NDY24_22305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDY24_22320 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDY24_22320 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDY24_22320 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDY24_22335 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NDY24_22335 PF01648 4'-phosphopantetheinyl transferase superfamily NDY24_22350 PF13193 AMP-binding enzyme C-terminal domain NDY24_22350 PF00501 AMP-binding enzyme NDY24_22350 PF00668 Condensation domain NDY24_22350 PF00550 Phosphopantetheine attachment site NDY24_22355 PF00550 Phosphopantetheine attachment site NDY24_22355 PF00668 Condensation domain NDY24_22355 PF13193 AMP-binding enzyme C-terminal domain NDY24_22355 PF00501 AMP-binding enzyme NDY24_22360 PF00550 Phosphopantetheine attachment site NDY24_22360 PF00668 Condensation domain NDY24_22360 PF13193 AMP-binding enzyme C-terminal domain NDY24_22360 PF00501 AMP-binding enzyme NDY24_22365 PF00501 AMP-binding enzyme NDY24_22365 PF00550 Phosphopantetheine attachment site NDY24_22365 PF13193 AMP-binding enzyme C-terminal domain NDY24_22365 PF00668 Condensation domain NDY24_22370 PF13193 AMP-binding enzyme C-terminal domain NDY24_22370 PF00550 Phosphopantetheine attachment site NDY24_22370 PF00668 Condensation domain NDY24_22370 PF00501 AMP-binding enzyme NDY24_22375 PF00668 Condensation domain NDY24_22375 PF00501 AMP-binding enzyme NDY24_22375 PF00550 Phosphopantetheine attachment site NDY24_22375 PF07993 Male sterility protein NDY24_22375 PF13193 AMP-binding enzyme C-terminal domain NDY24_22390 PF00550 Phosphopantetheine attachment site NDY24_22390 PF00668 Condensation domain NDY24_22390 PF13193 AMP-binding enzyme C-terminal domain NDY24_22390 PF00501 AMP-binding enzyme NDY24_22395 PF00550 Phosphopantetheine attachment site NDY24_22395 PF00668 Condensation domain NDY24_22395 PF00501 AMP-binding enzyme NDY24_22395 PF13193 AMP-binding enzyme C-terminal domain NDY24_22405 PF00155 Aminotransferase class I and II NDY24_22420 PF00583 Acetyltransferase (GNAT) family NDY24_22435 PF01066 CDP-alcohol phosphatidyltransferase NDY24_22440 PF08459 UvrC Helix-hairpin-helix N-terminal NDY24_22440 PF02151 UvrB/uvrC motif NDY24_22440 PF01541 GIY-YIG catalytic domain NDY24_22450 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDY24_22455 PF02348 Cytidylyltransferase NDY24_22460 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NDY24_22465 PF00664 ABC transporter transmembrane region NDY24_22465 PF00005 ABC transporter NDY24_22475 PF01618 MotA/TolQ/ExbB proton channel family NDY24_22480 PF00753 Metallo-beta-lactamase superfamily NDY24_22480 PF03772 Competence protein NDY24_22490 PF00005 ABC transporter NDY24_22495 PF12704 MacB-like periplasmic core domain NDY24_22495 PF02687 FtsX-like permease family NDY24_22505 PF03937 Flavinator of succinate dehydrogenase NDY24_22510 PF13085 2Fe-2S iron-sulfur cluster binding domain NDY24_22520 PF02910 Fumarate reductase flavoprotein C-term NDY24_22520 PF00890 FAD binding domain NDY24_22525 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDY24_22530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDY24_22535 PF01571 Aminomethyltransferase folate-binding domain NDY24_22540 PF17912 MalK OB fold domain NDY24_22540 PF00005 ABC transporter NDY24_22545 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NDY24_22545 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NDY24_22550 PF02685 Glucokinase NDY24_22555 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NDY24_22560 PF00920 Dehydratase family NDY24_22565 PF01081 KDPG and KHG aldolase NDY24_22570 PF00873 AcrB/AcrD/AcrF family NDY24_22615 PF02796 Helix-turn-helix domain of resolvase NDY24_22615 PF00239 Resolvase, N terminal domain NDY24_22680 PF02534 Type IV secretory system Conjugative DNA transfer NDY24_22720 PF00437 Type II/IV secretion system protein NDY24_22740 PF08751 TrwC relaxase NDY24_22740 PF18340 DNA relaxase TraI 2B/2B-like domain NDY24_22740 PF07057 DNA helicase TraI NDY24_22740 PF18272 single-stranded DNA binding TraI N-terminal subdomain NDY24_22755 PF18340 DNA relaxase TraI 2B/2B-like domain NDY24_22755 PF08751 TrwC relaxase NDY24_22755 PF18272 single-stranded DNA binding TraI N-terminal subdomain NDY24_22755 PF07057 DNA helicase TraI NDY24_22790 PF03230 Antirestriction protein NDY24_22810 PF02661 Fic/DOC family NDY24_22810 PF17841 BID domain of Bartonella effector protein (Bep) NDY24_22820 PF18495 Antitoxin VbhA NDY24_22845 PF06067 Domain of unknown function (DUF932) NDY24_22880 PF11740 Plasmid replication region DNA-binding N-term NDY24_22940 PF07516 SecA Wing and Scaffold domain NDY24_22940 PF01043 SecA preprotein cross-linking domain NDY24_22940 PF02810 SEC-C motif NDY24_22940 PF07517 SecA DEAD-like domain NDY24_22950 PF13175 AAA ATPase domain NDY24_22965 PF00873 AcrB/AcrD/AcrF family NDY24_22970 PF00529 HlyD membrane-fusion protein of T1SS NDY24_22970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDY24_22995 PF09278 MerR, DNA binding NDY24_22995 PF00376 MerR family regulatory protein NDY24_23005 PF01526 Tn3 transposase DDE domain NDY24_23005 PF13700 Domain of unknown function (DUF4158) NDY24_23025 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NDY24_23030 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NDY24_23045 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NDY24_23070 PF03743 Bacterial conjugation TrbI-like protein NDY24_23090 PF01131 DNA topoisomerase NDY24_23090 PF01751 Toprim domain NDY24_23095 PF01131 DNA topoisomerase NDY24_23095 PF01751 Toprim domain NDY24_23135 PF02796 Helix-turn-helix domain of resolvase NDY24_23135 PF00239 Resolvase, N terminal domain