locus-tag	class	description
NDY24_00060	COG0784	Response regulator, receiver
NDY24_00060	COG2205	protein histidine kinase activity
NDY24_00060	COG5002	protein histidine kinase activity
NDY24_00065	COG2183	response to ionizing radiation
NDY24_00090	COG3243	poly(R)-hydroxyalkanoic acid synthase
NDY24_00100	COG1183	phosphatidylcholine synthase activity
NDY24_00130	COG0668	transmembrane transport
NDY24_00135	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NDY24_00150	COG1914	H( )-stimulated, divalent metal cation uptake system
NDY24_00180	COG2814	Major facilitator Superfamily
NDY24_00195	COG1335	isochorismatase
NDY24_00210	COG2197	response regulator
NDY24_00255	COG0583	DNA-binding transcription factor activity
NDY24_00275	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NDY24_00280	COG1605	Chorismate mutase
NDY24_00280	COG0077	Prephenate dehydratase
NDY24_00285	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NDY24_00290	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
NDY24_00295	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
NDY24_00330	COG1228	amidohydrolase
NDY24_00345	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
NDY24_00375	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
NDY24_00385	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NDY24_00390	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NDY24_00395	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NDY24_00400	COG3115	cell septum assembly
NDY24_00425	COG0316	Belongs to the HesB IscA family
NDY24_00430	COG0017	Asparaginyl-tRNA synthetase
NDY24_00445	COG2808	Putative FMN-binding domain
NDY24_00470	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDY24_00475	COG2925	Exonuclease
NDY24_00500	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NDY24_00515	COG0488	(ABC) transporter
NDY24_00565	COG1024	Enoyl-CoA hydratase
NDY24_00575	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NDY24_00580	COG0659	secondary active sulfate transmembrane transporter activity
NDY24_00605	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NDY24_00625	COG0704	Plays a role in the regulation of phosphate uptake
NDY24_00635	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NDY24_00645	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NDY24_00655	COG0557	exoribonuclease II activity
NDY24_00670	COG1960	acyl-CoA dehydrogenase activity
NDY24_00675	COG2226	methyltransferase
NDY24_00680	COG0646	methionine synthase
NDY24_00680	COG1410	methionine synthase
NDY24_00685	COG1410	methionine synthase
NDY24_00685	COG0646	methionine synthase
NDY24_00695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NDY24_00720	COG2900	Belongs to the SlyX family
NDY24_00735	COG0386	Belongs to the glutathione peroxidase family
NDY24_00745	COG1725	Transcriptional regulator
NDY24_00750	COG1131	(ABC) transporter
NDY24_00780	COG1253	flavin adenine dinucleotide binding
NDY24_00795	COG2850	peptidyl-arginine hydroxylation
NDY24_00830	COG1619	proteins homologs of microcin C7 resistance protein MccF
NDY24_00835	COG1132	(ABC) transporter
NDY24_00845	COG2274	protein secretion by the type I secretion system
NDY24_00865	COG1605	Chorismate mutase
NDY24_00865	COG0287	Prephenate dehydrogenase
NDY24_00890	COG1420	regulation of RNA biosynthetic process
NDY24_00895	COG0497	DNA recombination
NDY24_00905	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDY24_00920	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NDY24_01070	COG1611	Belongs to the LOG family
NDY24_01085	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_01090	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NDY24_01135	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NDY24_01140	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NDY24_01145	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NDY24_01155	COG0195	Participates in both transcription termination and antitermination
NDY24_01160	COG0779	Required for maturation of 30S ribosomal subunits
NDY24_01170	COG1007	ATP synthesis coupled electron transport
NDY24_01190	COG0839	Belongs to the complex I subunit 6 family
NDY24_01200	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
NDY24_01210	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
NDY24_01215	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
NDY24_01220	COG0649	NAD binding
NDY24_01225	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NDY24_01235	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NDY24_01255	COG4221	oxidoreductase activity
NDY24_01285	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NDY24_01295	COG0159	tryptophan synthase activity
NDY24_01305	COG0133	tryptophan synthase activity
NDY24_01320	COG0101	tRNA pseudouridine synthase activity
NDY24_01335	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NDY24_01340	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NDY24_01370	COG0433	COG0433 Predicted ATPase
NDY24_01380	COG0494	nUDIX hydrolase
NDY24_01425	COG0717	Belongs to the dCTP deaminase family
NDY24_01430	COG0489	protein tyrosine kinase activity
NDY24_01450	COG3590	peptidase
NDY24_01455	COG3590	peptidase
NDY24_01475	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDY24_01485	COG2311	Membrane
NDY24_01490	COG1047	Peptidyl-prolyl cis-trans
NDY24_01500	COG0791	NLP P60 protein
NDY24_01530	COG4191	Histidine kinase
NDY24_01545	COG1301	dicarboxylic acid transport
NDY24_01550	COG1785	Belongs to the alkaline phosphatase family
NDY24_01555	COG0037	tRNA processing
NDY24_01560	COG1722	exodeoxyribonuclease VII activity
NDY24_01565	COG0142	geranyltranstransferase activity
NDY24_01580	COG0312	modulator of DNA gyrase
NDY24_01590	COG0312	modulator of DNA gyrase
NDY24_01600	COG3164	Protein of unknown function
NDY24_01610	COG0424	maF-like protein
NDY24_01625	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NDY24_01645	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NDY24_01660	COG0495	leucyl-tRNA aminoacylation
NDY24_01670	COG3118	belongs to the thioredoxin family
NDY24_01680	COG2155	Conserved Protein
NDY24_01720	COG1132	(ABC) transporter
NDY24_01730	COG0475	glutathione-regulated potassium exporter activity
NDY24_01740	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NDY24_01760	COG1187	pseudouridine synthase activity
NDY24_01765	COG5002	protein histidine kinase activity
NDY24_01765	COG5001	Diguanylate cyclase
NDY24_01775	COG1595	DNA-templated transcription, initiation
NDY24_01890	COG0667	Aldo Keto reductase
NDY24_01895	COG2814	Major facilitator Superfamily
NDY24_01900	COG0583	DNA-binding transcription factor activity
NDY24_01930	COG0667	Aldo Keto reductase
NDY24_01935	COG1309	transcriptional regulator
NDY24_01945	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDY24_01960	COG0735	belongs to the Fur family
NDY24_01965	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDY24_01990	COG4452	Inner membrane protein CreD
NDY24_02000	COG0745	RESPONSE REGULATOR receiver
NDY24_02010	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NDY24_02020	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NDY24_02075	COG2198	Histidine kinase
NDY24_02075	COG0643	Histidine kinase
NDY24_02080	COG0840	transmembrane signaling receptor activity
NDY24_02090	COG2202	Pas domain
NDY24_02090	COG2200	EAL domain
NDY24_02090	COG2199	diguanylate cyclase activity
NDY24_02095	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NDY24_02105	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDY24_02110	COG3590	peptidase
NDY24_02120	COG0588	phosphoglycerate mutase activity
NDY24_02130	COG1741	Belongs to the pirin family
NDY24_02155	COG2879	small protein
NDY24_02160	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NDY24_02190	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
NDY24_02195	COG1529	Aldehyde oxidase and xanthine dehydrogenase
NDY24_02200	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
NDY24_02205	COG2080	2 iron, 2 sulfur cluster binding
NDY24_02210	COG2203	Gaf domain
NDY24_02210	COG3706	GGDEF domain
NDY24_02210	COG4251	negative regulation of phosphorylation
NDY24_02210	COG5001	Diguanylate cyclase
NDY24_02225	COG0629	single-stranded DNA binding
NDY24_02230	COG0142	geranyltranstransferase activity
NDY24_02250	COG0527	aspartate kinase activity
NDY24_02270	COG1764	response to oxidative stress
NDY24_02280	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NDY24_02285	COG1678	Uncharacterized ACR, COG1678
NDY24_02290	COG0519	Catalyzes the synthesis of GMP from XMP
NDY24_02350	COG1959	2 iron, 2 sulfur cluster binding
NDY24_02355	COG0719	Fe-S assembly protein
NDY24_02360	COG0396	ATPase activity
NDY24_02365	COG0719	Fe-S assembly protein
NDY24_02385	COG4774	siderophore transport
NDY24_02390	COG3128	pkhd-type hydroxylase
NDY24_02415	COG1477	protein flavinylation
NDY24_02430	COG1555	photosystem II stabilization
NDY24_02445	COG3178	'Phosphotransferase
NDY24_02470	COG0288	reversible hydration of carbon dioxide
NDY24_02495	COG0386	Belongs to the glutathione peroxidase family
NDY24_02500	COG0339	signal peptide processing
NDY24_02555	COG2814	Major facilitator Superfamily
NDY24_02560	COG1566	PFAM secretion protein HlyD family protein
NDY24_02600	COG4774	siderophore transport
NDY24_02610	COG0367	asparagine synthase
NDY24_02620	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NDY24_02625	COG1393	Belongs to the ArsC family
NDY24_02640	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
NDY24_02685	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NDY24_02695	COG0528	UMP kinase activity
NDY24_02705	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NDY24_02710	COG0575	Belongs to the CDS family
NDY24_02715	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
NDY24_02720	COG0750	zinc metalloprotease
NDY24_02735	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDY24_02740	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NDY24_02745	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDY24_02750	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDY24_02765	COG0825	malonyl-CoA metabolic process
NDY24_02775	COG1981	membrane
NDY24_02795	COG1695	Transcriptional regulator
NDY24_02820	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NDY24_02840	COG2040	homocysteine
NDY24_02845	COG0833	amino acid
NDY24_02850	COG0346	lactoylglutathione lyase activity
NDY24_02855	COG1131	(ABC) transporter
NDY24_02870	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDY24_02870	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDY24_02880	COG2878	Part of a membrane complex involved in electron transport
NDY24_02895	COG1595	DNA-templated transcription, initiation
NDY24_02920	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NDY24_02945	COG0251	oxidation-reduction process
NDY24_02955	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
NDY24_02955	COG0392	lysyltransferase activity
NDY24_02985	COG2814	Major facilitator Superfamily
NDY24_02990	COG1902	pentaerythritol trinitrate reductase activity
NDY24_03005	COG2824	Alkylphosphonate utilization operon protein PhnA
NDY24_03015	COG1047	Peptidyl-prolyl cis-trans
NDY24_03055	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NDY24_03065	COG5487	UPF0391 membrane protein
NDY24_03070	COG1451	nucleotide metabolic process
NDY24_03090	COG0183	Belongs to the thiolase family
NDY24_03120	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NDY24_03120	COG1793	dna ligase
NDY24_03130	COG1793	dna ligase
NDY24_03135	COG1201	RNA secondary structure unwinding
NDY24_03145	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDY24_03150	COG1278	Cold shock
NDY24_03155	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
NDY24_03160	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
NDY24_03170	COG3046	protein related to deoxyribodipyrimidine photolyase
NDY24_03175	COG1233	COG1233 Phytoene dehydrogenase and related
NDY24_03180	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
NDY24_03185	COG2954	triphosphatase activity
NDY24_03210	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NDY24_03235	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NDY24_03250	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDY24_03250	COG1024	Enoyl-CoA hydratase
NDY24_03260	COG0457	Tetratricopeptide repeat
NDY24_03295	COG1024	Enoyl-CoA hydratase
NDY24_03320	COG3867	Arabinogalactan endo-beta-1,4-galactanase
NDY24_03325	COG3250	beta-galactosidase activity
NDY24_03335	COG0436	Aminotransferase
NDY24_03345	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NDY24_03365	COG3483	tryptophan 2,3-dioxygenase activity
NDY24_03375	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NDY24_03385	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
NDY24_03395	COG0534	Mate efflux family protein
NDY24_03405	COG0336	Belongs to the RNA methyltransferase TrmD family
NDY24_03410	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NDY24_03440	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NDY24_03485	COG4999	Histidine kinase
NDY24_03485	COG2205	protein histidine kinase activity
NDY24_03485	COG3850	Histidine kinase
NDY24_03485	COG3437	response regulator, receiver
NDY24_03490	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NDY24_03495	COG2201	protein-glutamate methylesterase activity
NDY24_03500	COG2205	protein histidine kinase activity
NDY24_03505	COG5507	3-demethylubiquinone-9 3-methyltransferase
NDY24_03525	COG4771	TonB-dependent receptor
NDY24_03550	COG2172	sigma factor antagonist activity
NDY24_03555	COG1366	Belongs to the anti-sigma-factor antagonist family
NDY24_03560	COG1366	Belongs to the anti-sigma-factor antagonist family
NDY24_03565	COG1902	pentaerythritol trinitrate reductase activity
NDY24_03575	COG0326	Molecular chaperone. Has ATPase activity
NDY24_03580	COG2207	Transcriptional regulator
NDY24_03590	COG3152	Membrane
NDY24_03605	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NDY24_03615	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NDY24_03635	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NDY24_03645	COG0196	riboflavin kinase activity
NDY24_03660	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NDY24_03665	COG0211	Belongs to the bacterial ribosomal protein bL27 family
NDY24_03675	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NDY24_03690	COG1024	Enoyl-CoA hydratase
NDY24_03695	COG1946	Acyl-CoA thioesterase
NDY24_03715	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
NDY24_03780	COG2197	response regulator
NDY24_03785	COG4585	Histidine kinase
NDY24_03805	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NDY24_03815	COG5002	protein histidine kinase activity
NDY24_03820	COG0745	RESPONSE REGULATOR receiver
NDY24_03835	COG2194	sulfuric ester hydrolase activity
NDY24_03855	COG2814	Major facilitator Superfamily
NDY24_03860	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NDY24_03860	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NDY24_03870	COG0656	L-ascorbic acid biosynthetic process
NDY24_03880	COG0753	catalase activity
NDY24_03885	COG2207	Transcriptional regulator
NDY24_03885	COG1917	Cupin 2, conserved barrel domain protein
NDY24_03895	COG1506	peptidase
NDY24_03895	COG0823	Involved in the tonB-independent uptake of proteins
NDY24_03905	COG1297	OPT oligopeptide transporter protein
NDY24_03925	COG0587	DNA-directed DNA polymerase activity
NDY24_03980	COG2080	2 iron, 2 sulfur cluster binding
NDY24_03985	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
NDY24_03990	COG1529	Aldehyde oxidase and xanthine dehydrogenase
NDY24_04005	COG1064	alcohol dehydrogenase
NDY24_04050	COG3537	Alpha-1,2-mannosidase
NDY24_04060	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_04070	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NDY24_04245	COG0732	type I restriction modification DNA specificity domain
NDY24_04280	COG0308	aminopeptidase N
NDY24_04295	COG0330	HflC and HflK could
NDY24_04300	COG0330	HflC and HflK could
NDY24_04320	COG0678	peroxiredoxin activity
NDY24_04330	COG4953	penicillin-binding protein 1C
NDY24_04400	COG2161	toxin-antitoxin pair type II binding
NDY24_04405	COG4115	mRNA cleavage
NDY24_04430	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NDY24_04450	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
NDY24_04465	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NDY24_04470	COG1399	metal-binding, possibly nucleic acid-binding protein
NDY24_04475	COG0424	maF-like protein
NDY24_04490	COG0714	Associated with various cellular activities
NDY24_04510	COG0537	adenosine 5'-monophosphoramidase activity
NDY24_04520	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
NDY24_04620	COG0314	molybdopterin synthase activity
NDY24_04625	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NDY24_04630	COG0315	cyclic pyranopterin monophosphate synthase activity
NDY24_04635	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NDY24_04650	COG0859	PFAM glycosyl transferase family 9
NDY24_04665	COG0631	protein serine/threonine phosphatase activity
NDY24_04685	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDY24_04695	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDY24_04725	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NDY24_04735	COG0544	peptidyl-prolyl cis-trans isomerase activity
NDY24_04745	COG0784	Response regulator, receiver
NDY24_04745	COG4191	Histidine kinase
NDY24_04780	COG0473	3-isopropylmalate dehydrogenase activity
NDY24_04795	COG4783	chaperone-mediated protein folding
NDY24_04810	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NDY24_04820	COG0438	transferase activity, transferring glycosyl groups
NDY24_04825	COG0671	phosphoesterase, PA-phosphatase related
NDY24_04830	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDY24_04840	COG3291	Pkd domain containing protein
NDY24_04845	COG2833	Protein of unknown function (DUF455)
NDY24_04865	COG0285	dihydrofolate synthase activity
NDY24_04875	COG0406	alpha-ribazole phosphatase activity
NDY24_04905	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
NDY24_04910	COG4208	sulfate ABC transporter
NDY24_04915	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NDY24_04920	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NDY24_04925	COG0156	8-amino-7-oxononanoate synthase activity
NDY24_04945	COG2885	chlorophyll binding
NDY24_04955	COG1902	pentaerythritol trinitrate reductase activity
NDY24_04955	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDY24_04975	COG0625	glutathione transferase activity
NDY24_04985	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NDY24_04990	COG1217	gtp-binding protein TYPA
NDY24_05000	COG0154	amidase activity
NDY24_05010	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
NDY24_05020	COG0203	ribosomal protein L17
NDY24_05045	COG0201	protein transport
NDY24_05090	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
NDY24_05100	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NDY24_05105	COG0255	Belongs to the universal ribosomal protein uL29 family
NDY24_05120	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NDY24_05130	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NDY24_05150	COG0051	transcription antitermination factor activity, RNA binding
NDY24_05155	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NDY24_05170	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NDY24_05175	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NDY24_05185	COG0222	ribosome binding
NDY24_05190	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NDY24_05195	COG0081	regulation of translation
NDY24_05200	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NDY24_05205	COG0250	Participates in transcription elongation, termination and antitermination
NDY24_05210	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NDY24_05240	COG0012	GTP binding
NDY24_05245	COG0193	aminoacyl-tRNA hydrolase activity
NDY24_05250	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
NDY24_05255	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NDY24_05270	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NDY24_05280	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NDY24_05295	COG0521	Mo-molybdopterin cofactor biosynthetic process
NDY24_05315	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDY24_05320	COG1295	ribonuclease BN
NDY24_05345	COG1404	Belongs to the peptidase S8 family
NDY24_05350	COG1404	Belongs to the peptidase S8 family
NDY24_05355	COG1404	Belongs to the peptidase S8 family
NDY24_05410	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NDY24_05410	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NDY24_05430	COG2890	protein-(glutamine-N5) methyltransferase activity
NDY24_05440	COG3634	alkyl hydroperoxide reductase activity
NDY24_05445	COG0583	DNA-binding transcription factor activity
NDY24_05450	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NDY24_05455	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NDY24_05465	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NDY24_05475	COG2197	response regulator
NDY24_05505	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDY24_05535	COG3386	PFAM SMP-30 Gluconolaconase
NDY24_05555	COG1024	Enoyl-CoA hydratase
NDY24_05565	COG0318	PFAM AMP-dependent synthetase and ligase
NDY24_05570	COG0583	DNA-binding transcription factor activity
NDY24_05575	COG3384	dioxygenase
NDY24_05605	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDY24_05610	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDY24_05620	COG2096	Adenosyltransferase
NDY24_05625	COG0123	including yeast histone deacetylase and acetoin utilization protein
NDY24_05640	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NDY24_05645	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NDY24_05650	COG2967	ApaG domain
NDY24_05655	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NDY24_05660	COG0431	NADPH-dependent FMN reductase
NDY24_05665	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDY24_05675	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDY24_05680	COG1116	anion transmembrane transporter activity
NDY24_05700	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
NDY24_05720	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NDY24_05730	COG0642	Histidine kinase
NDY24_05745	COG4181	ATPase activity
NDY24_05755	COG2175	clavaminate synthase activity
NDY24_05765	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
NDY24_05770	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDY24_05790	COG4771	TonB-dependent receptor
NDY24_05800	COG0667	Aldo Keto reductase
NDY24_05805	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NDY24_05815	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NDY24_05820	COG4106	trans-aconitate 2-methyltransferase activity
NDY24_05830	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NDY24_05875	COG2357	RelA SpoT domain protein
NDY24_05905	COG0604	alcohol dehydrogenase
NDY24_05905	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_05905	COG3321	synthase
NDY24_05915	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NDY24_05930	COG0494	nUDIX hydrolase
NDY24_05940	COG0653	protein targeting
NDY24_05945	COG0739	heme binding
NDY24_05970	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NDY24_05975	COG1181	Belongs to the D-alanine--D-alanine ligase family
NDY24_05980	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NDY24_06000	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NDY24_06005	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NDY24_06015	COG3116	cell division
NDY24_06060	COG0792	nuclease activity
NDY24_06065	COG1988	membrane-bound metal-dependent
NDY24_06070	COG0277	FAD linked oxidase domain protein
NDY24_06075	COG1506	peptidase
NDY24_06075	COG0823	Involved in the tonB-independent uptake of proteins
NDY24_06075	COG4946	Tricorn protease homolog
NDY24_06085	COG0745	RESPONSE REGULATOR receiver
NDY24_06090	COG2205	protein histidine kinase activity
NDY24_06100	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
NDY24_06105	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
NDY24_06120	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NDY24_06155	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NDY24_06155	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NDY24_06170	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
NDY24_06180	COG0488	(ABC) transporter
NDY24_06185	COG0242	peptide deformylase activity
NDY24_06200	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
NDY24_06245	COG2188	Transcriptional regulator
NDY24_06260	COG1450	Type ii and iii secretion system protein
NDY24_06275	COG3166	PFAM Fimbrial assembly family protein
NDY24_06280	COG3156	type II secretion system protein K
NDY24_06285	COG4795	General secretion pathway protein
NDY24_06290	COG2165	general secretion pathway protein
NDY24_06295	COG4970	Tfp pilus assembly protein FimT
NDY24_06300	COG2165	general secretion pathway protein
NDY24_06305	COG1459	type II secretion system
NDY24_06310	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NDY24_06320	COG5295	Hep Hag repeat protein
NDY24_06340	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NDY24_06340	COG0047	phosphoribosylformylglycinamidine synthase activity
NDY24_06345	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NDY24_06350	COG4974	Belongs to the 'phage' integrase family
NDY24_06360	COG0795	lipopolysaccharide-transporting ATPase activity
NDY24_06415	COG1183	phosphatidylcholine synthase activity
NDY24_06430	COG0442	prolyl-tRNA aminoacylation
NDY24_06445	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NDY24_06450	COG1127	ABC transporter
NDY24_06455	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NDY24_06455	COG3218	ABC-type transport auxiliary lipoprotein component
NDY24_06485	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NDY24_06500	COG0662	Cupin 2, conserved barrel domain protein
NDY24_06500	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
NDY24_06525	COG2086	electron transfer activity
NDY24_06540	COG0463	Glycosyl transferase, family 2
NDY24_06560	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NDY24_06565	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
NDY24_06605	COG0626	cystathionine gamma-synthase activity
NDY24_06635	COG0625	glutathione transferase activity
NDY24_06645	COG0513	Belongs to the DEAD box helicase family
NDY24_06660	COG4771	TonB-dependent receptor
NDY24_06665	COG0720	synthase
NDY24_06675	COG1569	PIN domain
NDY24_06680	COG3311	Transcriptional regulator
NDY24_06685	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NDY24_06690	COG1956	GAF domain-containing protein
NDY24_06700	COG2819	hydrolase of the alpha beta superfamily
NDY24_06710	COG0546	phosphoglycolate phosphatase activity
NDY24_06720	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NDY24_06735	COG0339	signal peptide processing
NDY24_06785	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NDY24_06795	COG1136	(ABC) transporter
NDY24_06815	COG4191	Histidine kinase
NDY24_06825	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NDY24_06840	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NDY24_06865	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NDY24_06875	COG0356	it plays a direct role in the translocation of protons across the membrane
NDY24_06895	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDY24_06905	COG0508	dehydrogenase complex catalyzes the overall conversion of
NDY24_06940	COG2011	ABC-type metal ion transport system permease component
NDY24_06945	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NDY24_06950	COG0697	spore germination
NDY24_06955	COG1666	GTP binding
NDY24_06970	COG1187	pseudouridine synthase activity
NDY24_06975	COG2813	Specifically methylates the guanine in position
NDY24_06995	COG0784	Response regulator, receiver
NDY24_06995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDY24_06995	COG2198	Histidine kinase
NDY24_06995	COG2205	protein histidine kinase activity
NDY24_07015	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NDY24_07020	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDY24_07080	COG0842	Transport permease protein
NDY24_07085	COG1131	(ABC) transporter
NDY24_07090	COG0025	NhaP-type Na H and K H
NDY24_07100	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
NDY24_07125	COG0583	DNA-binding transcription factor activity
NDY24_07135	COG0667	Aldo Keto reductase
NDY24_07145	COG3590	peptidase
NDY24_07160	COG0531	amino acid
NDY24_07175	COG2972	Histidine kinase
NDY24_07195	COG3685	Protein conserved in bacteria
NDY24_07200	COG3546	catalase activity
NDY24_07225	COG2204	response regulator
NDY24_07240	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_07245	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NDY24_07265	COG1132	(ABC) transporter
NDY24_07300	COG0583	DNA-binding transcription factor activity
NDY24_07305	COG2814	Major facilitator Superfamily
NDY24_07345	COG1131	(ABC) transporter
NDY24_07360	COG0251	oxidation-reduction process
NDY24_07380	COG0840	transmembrane signaling receptor activity
NDY24_07410	COG0659	secondary active sulfate transmembrane transporter activity
NDY24_07415	COG0024	Methionine aminopeptidase
NDY24_07445	COG1309	transcriptional regulator
NDY24_07455	COG1902	pentaerythritol trinitrate reductase activity
NDY24_07485	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NDY24_07560	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NDY24_07565	COG1490	D-aminoacyl-tRNA deacylase activity
NDY24_07570	COG1560	Kdo2-lipid A biosynthetic process
NDY24_07580	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NDY24_07615	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NDY24_07615	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NDY24_07620	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
NDY24_07625	COG0242	peptide deformylase activity
NDY24_07630	COG1652	LysM domain
NDY24_07635	COG0758	DNA mediated transformation
NDY24_07675	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_07685	COG0616	signal peptide processing
NDY24_07690	COG0534	Mate efflux family protein
NDY24_07705	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NDY24_07715	COG0625	glutathione transferase activity
NDY24_07730	COG1252	NADH dehydrogenase
NDY24_07735	COG2860	membrane
NDY24_07740	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NDY24_07745	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
NDY24_07750	COG2201	protein-glutamate methylesterase activity
NDY24_07755	COG2177	Part of the ABC transporter FtsEX involved in
NDY24_07760	COG2884	Cell division ATP-binding protein ftsE
NDY24_07770	COG3118	belongs to the thioredoxin family
NDY24_07775	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
NDY24_07810	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
NDY24_07840	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NDY24_07840	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NDY24_07845	COG1473	amidohydrolase
NDY24_07850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDY24_07855	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDY24_07865	COG5383	Protein conserved in bacteria
NDY24_07905	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
NDY24_07930	COG3023	N-Acetylmuramoyl-L-alanine amidase
NDY24_07940	COG4948	Mandelate Racemase Muconate Lactonizing
NDY24_07950	COG0531	amino acid
NDY24_07965	COG4682	membrane
NDY24_07970	COG2133	pyrroloquinoline quinone binding
NDY24_07985	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NDY24_08000	COG1610	YqeY-like protein
NDY24_08005	COG1295	ribonuclease BN
NDY24_08025	COG0109	protoheme IX farnesyltransferase activity
NDY24_08055	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
NDY24_08070	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NDY24_08115	COG0739	heme binding
NDY24_08130	COG2807	transmembrane transport
NDY24_08135	COG0708	Exodeoxyribonuclease III
NDY24_08150	COG1192	Involved in chromosome partitioning
NDY24_08155	COG1475	DNA binding
NDY24_08170	COG0463	Glycosyl transferase, family 2
NDY24_08190	COG0756	dUTP diphosphatase activity
NDY24_08195	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NDY24_08205	COG0018	arginyl-trna synthetase
NDY24_08215	COG4221	oxidoreductase activity
NDY24_08245	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_08250	COG1166	arginine decarboxylase activity
NDY24_08255	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
NDY24_08290	COG0606	chelatase, subunit chli
NDY24_08305	COG4943	cyclic-guanylate-specific phosphodiesterase activity
NDY24_08355	COG1090	epimerase
NDY24_08385	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NDY24_08410	COG1011	Hydrolase
NDY24_08415	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NDY24_08445	COG2197	response regulator
NDY24_08450	COG4585	Histidine kinase
NDY24_08455	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDY24_08460	COG1136	(ABC) transporter
NDY24_08465	COG3039	Transposase
NDY24_08490	COG0697	spore germination
NDY24_08515	COG0180	Tryptophanyl-tRNA synthetase
NDY24_08520	COG3237	CsbD-like
NDY24_08560	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NDY24_08575	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
NDY24_08580	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
NDY24_08580	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
NDY24_08620	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NDY24_08645	COG1199	ATP-dependent helicase activity
NDY24_08670	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NDY24_08810	COG4555	ABC transporter
NDY24_08820	COG1476	TRANSCRIPTIONal
NDY24_08845	COG0543	2 iron, 2 sulfur cluster binding
NDY24_08845	COG0633	Ferredoxin
NDY24_08850	COG1131	(ABC) transporter
NDY24_08855	COG0842	Transport permease protein
NDY24_08870	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NDY24_08890	COG1607	acyl-coa hydrolase
NDY24_08895	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDY24_08915	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NDY24_08930	COG0045	succinate-CoA ligase (ADP-forming) activity
NDY24_08930	COG1042	CoA-binding domain protein
NDY24_08930	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NDY24_08945	COG1629	transport
NDY24_08945	COG4771	TonB-dependent receptor
NDY24_08950	COG2239	Acts as a magnesium transporter
NDY24_08960	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NDY24_08965	COG3387	PFAM Glycoside hydrolase 15-related
NDY24_08975	COG3100	YcgL domain-containing protein
NDY24_08980	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NDY24_09000	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_09040	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NDY24_09120	COG3621	Patatin-like phospholipase
NDY24_09145	COG0210	DNA helicase
NDY24_09155	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDY24_09165	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NDY24_09175	COG2159	amidohydrolase
NDY24_09200	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDY24_09225	COG3540	Alkaline phosphatase
NDY24_09235	COG2091	lysine biosynthetic process via aminoadipic acid
NDY24_09250	COG0708	Exodeoxyribonuclease III
NDY24_09270	COG1940	carbohydrate kinase activity
NDY24_09295	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDY24_09300	COG3162	membrane
NDY24_09350	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_09355	COG0179	Fumarylacetoacetate (FAA) hydrolase
NDY24_09360	COG4948	Mandelate Racemase Muconate Lactonizing
NDY24_09365	COG3254	rhamnose metabolic process
NDY24_09370	COG0738	Major facilitator superfamily
NDY24_09375	COG1414	Transcriptional regulator
NDY24_09390	COG1971	Probably functions as a manganese efflux pump
NDY24_09395	COG2205	protein histidine kinase activity
NDY24_09400	COG3459	Glycosyltransferase 36 associated
NDY24_09405	COG2211	Major facilitator Superfamily
NDY24_09410	COG3265	gluconokinase activity
NDY24_09415	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDY24_09440	COG2911	Protein conserved in bacteria
NDY24_09445	COG0729	surface antigen
NDY24_09450	COG4771	TonB-dependent receptor
NDY24_09455	COG0457	Tetratricopeptide repeat
NDY24_09470	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NDY24_09480	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NDY24_09480	COG0519	Catalyzes the synthesis of GMP from XMP
NDY24_09495	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NDY24_09500	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NDY24_09510	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NDY24_09525	COG2974	May be involved in recombination
NDY24_09535	COG2115	Belongs to the xylose isomerase family
NDY24_09550	COG3661	Belongs to the glycosyl hydrolase 67 family
NDY24_09560	COG4948	Mandelate Racemase Muconate Lactonizing
NDY24_09575	COG0246	Mannitol dehydrogenase
NDY24_09605	COG1620	l-lactate permease
NDY24_09640	COG1904	glucuronate isomerase
NDY24_09645	COG3693	PFAM glycoside hydrolase, family 10
NDY24_09660	COG2211	Major facilitator Superfamily
NDY24_09695	COG2937	Belongs to the GPAT DAPAT family
NDY24_09725	COG0284	orotidine-5'-phosphate decarboxylase activity
NDY24_09730	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
NDY24_09735	COG3132	Protein of unknown function, DUF480
NDY24_09755	COG0210	DNA helicase
NDY24_09760	COG1435	thymidine kinase activity
NDY24_09770	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
NDY24_09780	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
NDY24_09815	COG3135	benzoate transporter
NDY24_09850	COG0730	response to heat
NDY24_09885	COG0302	gtp cyclohydrolase
NDY24_09900	COG1566	PFAM secretion protein HlyD family protein
NDY24_09910	COG1289	transmembrane transporter activity
NDY24_09915	COG0477	Major facilitator Superfamily
NDY24_10040	COG2207	Transcriptional regulator
NDY24_10045	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_10055	COG3549	Plasmid maintenance system killer
NDY24_10070	COG1074	ATP-dependent DNA helicase activity
NDY24_10110	COG1127	ABC transporter
NDY24_10115	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NDY24_10120	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NDY24_10135	COG2853	Lipoprotein
NDY24_10155	COG0386	Belongs to the glutathione peroxidase family
NDY24_10165	COG1322	Protein conserved in bacteria
NDY24_10170	COG0625	glutathione transferase activity
NDY24_10175	COG0531	amino acid
NDY24_10180	COG3537	Alpha-1,2-mannosidase
NDY24_10210	COG4771	TonB-dependent receptor
NDY24_10220	COG2199	diguanylate cyclase activity
NDY24_10220	COG2203	Gaf domain
NDY24_10225	COG3835	regulator
NDY24_10235	COG2271	Major facilitator Superfamily
NDY24_10290	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NDY24_10295	COG0861	Integral membrane protein TerC family
NDY24_10305	COG0584	glycerophosphoryl diester phosphodiesterase
NDY24_10320	COG0671	phosphoesterase, PA-phosphatase related
NDY24_10345	COG0706	membrane insertase activity
NDY24_10375	COG0187	DNA topoisomerase II activity
NDY24_10385	COG0501	Belongs to the peptidase M48B family
NDY24_10420	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NDY24_10430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDY24_10465	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NDY24_10470	COG0793	Belongs to the peptidase S41A family
NDY24_10475	COG4942	peptidase
NDY24_10485	COG2234	aminopeptidase activity
NDY24_10495	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDY24_10500	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDY24_10505	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDY24_10510	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDY24_10515	COG1064	alcohol dehydrogenase
NDY24_10525	COG0493	'glutamate synthase
NDY24_10530	COG0067	glutamate synthase
NDY24_10530	COG0070	glutamate synthase
NDY24_10530	COG0069	glutamate synthase activity
NDY24_10565	COG1741	Belongs to the pirin family
NDY24_10575	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NDY24_10590	COG3459	Glycosyltransferase 36 associated
NDY24_10595	COG3459	Glycosyltransferase 36 associated
NDY24_10670	COG3177	Filamentation induced by cAMP protein fic
NDY24_10675	COG1272	protein, Hemolysin III
NDY24_10705	COG0583	DNA-binding transcription factor activity
NDY24_10710	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_10720	COG1733	regulation of RNA biosynthetic process
NDY24_10760	COG2801	Transposase and inactivated derivatives
NDY24_10840	COG1484	DNA-dependent DNA replication
NDY24_10845	COG4584	PFAM Integrase catalytic
NDY24_10885	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NDY24_10895	COG3237	CsbD-like
NDY24_10935	COG0657	acetylesterase activity
NDY24_10945	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDY24_10990	COG0714	Associated with various cellular activities
NDY24_11050	COG4772	TonB-dependent receptor
NDY24_11060	COG0662	Cupin 2, conserved barrel domain protein
NDY24_11070	COG1012	belongs to the aldehyde dehydrogenase family
NDY24_11135	COG1755	Isoprenylcysteine carboxyl methyltransferase
NDY24_11140	COG4585	Histidine kinase
NDY24_11145	COG2197	response regulator
NDY24_11160	COG3710	Transcriptional regulator
NDY24_11165	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
NDY24_11180	COG4771	TonB-dependent receptor
NDY24_11390	COG0366	Alpha amylase catalytic
NDY24_11395	COG0366	Alpha amylase catalytic
NDY24_11400	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NDY24_11430	COG2755	lipolytic protein G-D-S-L family
NDY24_11440	COG0657	acetylesterase activity
NDY24_11440	COG2755	lipolytic protein G-D-S-L family
NDY24_11450	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NDY24_11465	COG3507	Belongs to the glycosyl hydrolase 43 family
NDY24_11470	COG1609	Transcriptional regulator
NDY24_11475	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
NDY24_11480	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_11520	COG3186	Phenylalanine-4-hydroxylase
NDY24_11525	COG1522	sequence-specific DNA binding
NDY24_11540	COG1119	ATPase activity
NDY24_11555	COG0517	IMP dehydrogenase activity
NDY24_11555	COG1125	glycine betaine transport
NDY24_11570	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NDY24_11580	COG3550	peptidyl-serine autophosphorylation
NDY24_11585	COG1396	sequence-specific DNA binding
NDY24_11605	COG0489	protein tyrosine kinase activity
NDY24_11610	COG2062	phosphohistidine phosphatase, SixA
NDY24_11620	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDY24_11640	COG3039	Transposase
NDY24_11665	COG0174	glutamine synthetase
NDY24_11670	COG0347	Belongs to the P(II) protein family
NDY24_11675	COG0004	ammonium transporteR
NDY24_11680	COG3852	Histidine kinase
NDY24_11685	COG2204	response regulator
NDY24_11690	COG2032	superoxide dismutase activity
NDY24_11695	COG2032	superoxide dismutase activity
NDY24_11705	COG0183	Belongs to the thiolase family
NDY24_11745	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NDY24_11755	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
NDY24_11765	COG0028	Belongs to the TPP enzyme family
NDY24_11795	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NDY24_11810	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NDY24_11820	COG0596	Alpha beta hydrolase
NDY24_11825	COG0727	PFAM Uncharacterised protein family (UPF0153)
NDY24_11830	COG0318	PFAM AMP-dependent synthetase and ligase
NDY24_11850	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NDY24_11865	COG1181	Belongs to the D-alanine--D-alanine ligase family
NDY24_11880	COG0564	pseudouridine synthase activity
NDY24_11935	COG0475	glutathione-regulated potassium exporter activity
NDY24_11940	COG0583	DNA-binding transcription factor activity
NDY24_11945	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NDY24_11950	COG2224	Isocitrate lyase
NDY24_11985	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NDY24_11990	COG1960	acyl-CoA dehydrogenase activity
NDY24_12045	COG0523	cobalamin synthesis protein
NDY24_12060	COG0697	spore germination
NDY24_12070	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NDY24_12085	COG1846	Transcriptional regulator
NDY24_12090	COG1764	response to oxidative stress
NDY24_12115	COG0656	L-ascorbic acid biosynthetic process
NDY24_12120	COG2130	NADP-dependent
NDY24_12135	COG1187	pseudouridine synthase activity
NDY24_12145	COG1643	Atp-dependent helicase
NDY24_12150	COG0840	transmembrane signaling receptor activity
NDY24_12155	COG4807	Protein conserved in bacteria
NDY24_12160	COG2351	hydroxyisourate hydrolase activity
NDY24_12165	COG2072	flavoprotein involved in K transport
NDY24_12185	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
NDY24_12240	COG3039	Transposase
NDY24_12285	COG2252	PERMEase
NDY24_12305	COG0084	hydrolase, TatD family'
NDY24_12315	COG0583	DNA-binding transcription factor activity
NDY24_12320	COG2814	Major facilitator Superfamily
NDY24_12330	COG0596	Alpha beta hydrolase
NDY24_12350	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
NDY24_12355	COG1902	pentaerythritol trinitrate reductase activity
NDY24_12375	COG2223	nitrite transmembrane transporter activity
NDY24_12380	COG0745	RESPONSE REGULATOR receiver
NDY24_12385	COG2205	protein histidine kinase activity
NDY24_12390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDY24_12410	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NDY24_12415	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NDY24_12445	COG0702	epimerase
NDY24_12450	COG1733	regulation of RNA biosynthetic process
NDY24_12545	COG3039	Transposase
NDY24_12550	COG3039	Transposase
NDY24_12580	COG0129	dihydroxy-acid dehydratase activity
NDY24_12590	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NDY24_12640	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
NDY24_12645	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NDY24_12680	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NDY24_12685	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NDY24_12695	COG3485	protocatechuate 3,4-dioxygenase
NDY24_12700	COG3485	protocatechuate 3,4-dioxygenase
NDY24_12710	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDY24_12715	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NDY24_12725	COG1414	Transcriptional regulator
NDY24_12735	COG0657	acetylesterase activity
NDY24_12745	COG0445	tRNA wobble uridine modification
NDY24_12755	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NDY24_12795	COG0156	8-amino-7-oxononanoate synthase activity
NDY24_12800	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NDY24_12805	COG1040	competence protein
NDY24_12835	COG3264	Mechanosensitive ion channel
NDY24_12835	COG1511	domain protein
NDY24_12845	COG1368	sulfuric ester hydrolase activity
NDY24_12850	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NDY24_12855	COG2354	Protein conserved in bacteria
NDY24_12860	COG1649	PFAM Uncharacterised BCR, COG1649
NDY24_12870	COG0297	glycogen (starch) synthase activity
NDY24_12875	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NDY24_12880	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NDY24_12920	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_12955	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDY24_12965	COG0513	Belongs to the DEAD box helicase family
NDY24_12975	COG0508	dehydrogenase complex catalyzes the overall conversion of
NDY24_12990	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
NDY24_13005	COG3104	oligopeptide transport
NDY24_13025	COG2852	Protein conserved in bacteria
NDY24_13035	COG3039	Transposase
NDY24_13070	COG1320	monovalent cation:proton antiporter activity
NDY24_13075	COG2212	antiporter activity
NDY24_13085	COG0651	ATP synthesis coupled electron transport
NDY24_13090	COG1006	Multisubunit Na H antiporter MnhC subunit
NDY24_13095	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NDY24_13095	COG2111	Na H antiporter
NDY24_13140	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
NDY24_13150	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NDY24_13160	COG1597	lipid kinase activity
NDY24_13185	COG2963	transposase activity
NDY24_13220	COG3039	Transposase
NDY24_13230	COG3039	Transposase
NDY24_13240	COG3039	Transposase
NDY24_13340	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NDY24_13410	COG0840	transmembrane signaling receptor activity
NDY24_13425	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NDY24_13430	COG0134	indole-3-glycerol-phosphate synthase activity
NDY24_13440	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDY24_13455	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
NDY24_13520	COG0316	Belongs to the HesB IscA family
NDY24_13525	COG2816	NAD+ diphosphatase activity
NDY24_13530	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
NDY24_13550	COG2814	Major facilitator Superfamily
NDY24_13555	COG1289	transmembrane transporter activity
NDY24_13560	COG0151	Belongs to the GarS family
NDY24_13565	COG0138	bifunctional purine biosynthesis protein purh
NDY24_13595	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NDY24_13615	COG2264	protein methyltransferase activity
NDY24_13630	COG0439	Biotin carboxylase
NDY24_13640	COG0511	ligase activity, forming carbon-carbon bonds
NDY24_13645	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
NDY24_13670	COG1324	tolerance protein
NDY24_13675	COG2356	endonuclease I
NDY24_13695	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NDY24_13715	COG2189	Belongs to the N(4) N(6)-methyltransferase family
NDY24_13760	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NDY24_13785	COG3712	iron ion homeostasis
NDY24_13810	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NDY24_13825	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NDY24_13850	COG2353	YceI-like domain
NDY24_13875	COG3052	prosthetic group binding
NDY24_13910	COG1802	Transcriptional regulator
NDY24_13925	COG1366	Belongs to the anti-sigma-factor antagonist family
NDY24_14055	COG3039	Transposase
NDY24_14065	COG3293	Transposase
NDY24_14075	COG4206	TonB-dependent receptor
NDY24_14080	COG1506	peptidase
NDY24_14080	COG0823	Involved in the tonB-independent uptake of proteins
NDY24_14120	COG0435	Glutathione S-transferase
NDY24_14155	COG0823	Involved in the tonB-independent uptake of proteins
NDY24_14155	COG1506	peptidase
NDY24_14190	COG0697	spore germination
NDY24_14210	COG1113	amino acid transport
NDY24_14225	COG3507	Belongs to the glycosyl hydrolase 43 family
NDY24_14270	COG0840	transmembrane signaling receptor activity
NDY24_14275	COG5297	Belongs to the glycosyl hydrolase family 6
NDY24_14275	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDY24_14280	COG0659	secondary active sulfate transmembrane transporter activity
NDY24_14310	COG3275	phosphorelay sensor kinase activity
NDY24_14320	COG0181	hydroxymethylbilane synthase activity
NDY24_14345	COG1505	serine-type exopeptidase activity
NDY24_14350	COG0436	Aminotransferase
NDY24_14360	COG2832	Protein of unknown function (DUF454)
NDY24_14370	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NDY24_14380	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NDY24_14385	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
NDY24_14390	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NDY24_14395	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NDY24_14420	COG2226	methyltransferase
NDY24_14425	COG3300	MHYT domain
NDY24_14425	COG5001	Diguanylate cyclase
NDY24_14430	COG0308	aminopeptidase N
NDY24_14465	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
NDY24_14490	COG0730	response to heat
NDY24_14495	COG1012	belongs to the aldehyde dehydrogenase family
NDY24_14500	COG0367	asparagine synthase
NDY24_14505	COG1213	nucleotidyl transferase
NDY24_14515	COG0028	Belongs to the TPP enzyme family
NDY24_14515	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
NDY24_14535	COG3284	Transcriptional regulator
NDY24_14540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NDY24_14545	COG1077	Cell shape determining protein MreB Mrl
NDY24_14550	COG1792	Involved in formation and maintenance of cell shape
NDY24_14565	COG0772	Belongs to the SEDS family
NDY24_14605	COG2951	lytic endotransglycosylase activity
NDY24_14610	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NDY24_14635	COG0321	lipoyl(octanoyl) transferase activity
NDY24_14640	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NDY24_14655	COG1051	belongs to the nudix hydrolase family
NDY24_14655	COG1056	cytidyltransferase-related domain
NDY24_14690	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
NDY24_14695	COG0673	inositol 2-dehydrogenase activity
NDY24_14700	COG2823	Periplasmic or secreted lipoprotein
NDY24_14740	COG0583	DNA-binding transcription factor activity
NDY24_14745	COG4251	negative regulation of phosphorylation
NDY24_14750	COG0784	Response regulator, receiver
NDY24_14755	COG4191	Histidine kinase
NDY24_14760	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NDY24_14765	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_14810	COG1459	type II secretion system
NDY24_14835	COG3156	type II secretion system protein K
NDY24_14860	COG3250	beta-galactosidase activity
NDY24_14880	COG2188	Transcriptional regulator
NDY24_14890	COG1609	Transcriptional regulator
NDY24_14895	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NDY24_14900	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NDY24_14940	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
NDY24_14950	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NDY24_14960	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NDY24_14975	COG0218	Necessary for normal cell division and for the maintenance of normal septation
NDY24_14980	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NDY24_14995	COG2205	protein histidine kinase activity
NDY24_15020	COG3920	Histidine kinase
NDY24_15035	COG3791	Glutathione-dependent formaldehyde-activating
NDY24_15045	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDY24_15055	COG0697	spore germination
NDY24_15095	COG0402	S-adenosylhomocysteine deaminase activity
NDY24_15110	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NDY24_15115	COG0726	polysaccharide deacetylase
NDY24_15120	COG4773	Receptor
NDY24_15180	COG2211	Major facilitator Superfamily
NDY24_15185	COG1609	Transcriptional regulator
NDY24_15190	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_15195	COG2851	Citrate transporter
NDY24_15210	COG0642	Histidine kinase
NDY24_15220	COG2197	response regulator
NDY24_15230	COG0583	DNA-binding transcription factor activity
NDY24_15250	COG4191	Histidine kinase
NDY24_15265	COG0280	phosphate acetyltransferase
NDY24_15265	COG0281	malic enzyme
NDY24_15290	COG1560	Kdo2-lipid A biosynthetic process
NDY24_15295	COG1519	Transferase
NDY24_15305	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NDY24_15325	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NDY24_15330	COG0066	3-isopropylmalate dehydratase activity
NDY24_15335	COG2226	methyltransferase
NDY24_15340	COG0473	3-isopropylmalate dehydrogenase activity
NDY24_15345	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NDY24_15375	COG0840	transmembrane signaling receptor activity
NDY24_15385	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
NDY24_15410	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NDY24_15420	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
NDY24_15435	COG0563	adenylate kinase activity
NDY24_15440	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NDY24_15450	COG3781	membrane
NDY24_15455	COG0671	phosphoesterase, PA-phosphatase related
NDY24_15470	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_15485	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDY24_15490	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NDY24_15520	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NDY24_15525	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
NDY24_15535	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NDY24_15545	COG0352	thiamine-phosphate diphosphorylase activity
NDY24_15550	COG1773	rubredoxin
NDY24_15555	COG2912	Transglutaminase-like superfamily
NDY24_15600	COG0006	proline dipeptidase activity
NDY24_15610	COG0006	proline dipeptidase activity
NDY24_15625	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NDY24_15630	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NDY24_15640	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NDY24_15645	COG1561	YicC-like family, N-terminal region
NDY24_15725	COG0714	Associated with various cellular activities
NDY24_15755	COG1301	dicarboxylic acid transport
NDY24_15770	COG4773	Receptor
NDY24_15775	COG0583	DNA-binding transcription factor activity
NDY24_15780	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_15790	COG1376	ErfK ybiS ycfS ynhG family protein
NDY24_15825	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
NDY24_15830	COG4149	molybdate abc transporter
NDY24_15835	COG0725	ABC transporter, periplasmic molybdate-binding protein
NDY24_15840	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDY24_15840	COG3453	Protein conserved in bacteria
NDY24_15850	COG3047	cAMP biosynthetic process
NDY24_15865	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NDY24_15900	COG3588	fructose-bisphosphate aldolase
NDY24_15905	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
NDY24_15960	COG0175	sulfate reduction
NDY24_15965	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDY24_15970	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NDY24_15980	COG0529	Catalyzes the synthesis of activated sulfate
NDY24_15980	COG2895	sulfate adenylyltransferase (ATP) activity
NDY24_15985	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDY24_15990	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDY24_16080	COG2272	Belongs to the type-B carboxylesterase lipase family
NDY24_16090	COG4948	Mandelate Racemase Muconate Lactonizing
NDY24_16105	COG1609	Transcriptional regulator
NDY24_16135	COG0471	metal ion transport
NDY24_16135	COG3273	potassium ion transport
NDY24_16140	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NDY24_16180	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NDY24_16220	COG3220	belongs to the UPF0276 family
NDY24_16435	COG2814	Major facilitator Superfamily
NDY24_16455	COG3039	Transposase
NDY24_16490	COG2856	Zn peptidase
NDY24_16505	COG0583	DNA-binding transcription factor activity
NDY24_16510	COG1238	metal cluster binding
NDY24_16515	COG0840	transmembrane signaling receptor activity
NDY24_16550	COG0189	ligase activity
NDY24_16555	COG0745	RESPONSE REGULATOR receiver
NDY24_16585	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
NDY24_16595	COG4969	Belongs to the N-Me-Phe pilin family
NDY24_16600	COG2194	sulfuric ester hydrolase activity
NDY24_16650	COG0045	succinate-CoA ligase (ADP-forming) activity
NDY24_16690	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NDY24_16690	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDY24_16700	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDY24_16705	COG0564	pseudouridine synthase activity
NDY24_16720	COG3011	Protein conserved in bacteria
NDY24_16725	COG0840	transmembrane signaling receptor activity
NDY24_16740	COG3387	PFAM Glycoside hydrolase 15-related
NDY24_16800	COG0667	Aldo Keto reductase
NDY24_16805	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDY24_16810	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDY24_16815	COG1116	anion transmembrane transporter activity
NDY24_16820	COG0542	response to heat
NDY24_16830	COG4206	TonB-dependent receptor
NDY24_16840	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
NDY24_16855	COG5297	Belongs to the glycosyl hydrolase family 6
NDY24_16860	COG5599	Phosphatase
NDY24_16870	COG0019	diaminopimelate decarboxylase activity
NDY24_16875	COG4264	IucA IucC family
NDY24_16880	COG2814	Major facilitator Superfamily
NDY24_16885	COG4264	IucA IucC family
NDY24_16895	COG4772	TonB-dependent receptor
NDY24_16905	COG4651	solute:proton antiporter activity
NDY24_16905	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDY24_16930	COG0488	(ABC) transporter
NDY24_16945	COG0477	Major facilitator Superfamily
NDY24_17000	COG2255	four-way junction helicase activity
NDY24_17005	COG0824	Thioesterase
NDY24_17015	COG0848	biopolymer transport protein
NDY24_17030	COG2885	chlorophyll binding
NDY24_17040	COG0602	queuosine metabolic process
NDY24_17045	COG0667	Aldo Keto reductase
NDY24_17055	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NDY24_17060	COG3920	Histidine kinase
NDY24_17080	COG0840	transmembrane signaling receptor activity
NDY24_17090	COG1187	pseudouridine synthase activity
NDY24_17105	COG0514	ATP-dependent DNA helicase (RecQ)
NDY24_17110	COG0783	Belongs to the Dps family
NDY24_17135	COG0535	radical SAM domain protein
NDY24_17150	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
NDY24_17160	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDY24_17170	COG1216	Glycosyl transferase, family 2
NDY24_17175	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NDY24_17185	COG1199	ATP-dependent helicase activity
NDY24_17200	COG0189	ligase activity
NDY24_17215	COG0835	chemotaxis
NDY24_17220	COG0840	transmembrane signaling receptor activity
NDY24_17225	COG2198	Histidine kinase
NDY24_17225	COG0784	Response regulator, receiver
NDY24_17225	COG0643	Histidine kinase
NDY24_17230	COG2201	protein-glutamate methylesterase activity
NDY24_17255	COG1595	DNA-templated transcription, initiation
NDY24_17260	COG2304	oxidoreductase activity
NDY24_17265	COG1446	asparaginase
NDY24_17295	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
NDY24_17300	COG0732	type I restriction modification DNA specificity domain
NDY24_17310	COG3645	SOS response
NDY24_17380	COG1486	melibiose metabolic process
NDY24_17420	COG3525	Glycosyl hydrolase, family 20, catalytic domain
NDY24_17440	COG0837	glucose binding
NDY24_17445	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NDY24_17455	COG0494	nUDIX hydrolase
NDY24_17460	COG1218	3'(2'),5'-bisphosphate nucleotidase
NDY24_17465	COG3956	TIGRFAM MazG family protein
NDY24_17470	COG1742	UPF0060 membrane protein
NDY24_17505	COG1960	acyl-CoA dehydrogenase activity
NDY24_17515	COG1309	transcriptional regulator
NDY24_17530	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
NDY24_17540	COG0463	Glycosyl transferase, family 2
NDY24_17545	COG0516	GMP reductase activity
NDY24_17545	COG0517	IMP dehydrogenase activity
NDY24_17560	COG1272	protein, Hemolysin III
NDY24_17565	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
NDY24_17575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDY24_17580	COG0626	cystathionine gamma-synthase activity
NDY24_17585	COG0460	homoserine dehydrogenase
NDY24_17585	COG0527	aspartate kinase activity
NDY24_17595	COG1760	l-serine dehydratase
NDY24_17605	COG1278	Cold shock
NDY24_17615	COG3038	cytochrome b561
NDY24_17620	COG2353	YceI-like domain
NDY24_17625	COG2198	Histidine kinase
NDY24_17625	COG2205	protein histidine kinase activity
NDY24_17625	COG0784	Response regulator, receiver
NDY24_17640	COG0477	Major facilitator Superfamily
NDY24_17645	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
NDY24_17655	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
NDY24_17660	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NDY24_17665	COG0259	pyridoxamine-phosphate oxidase activity
NDY24_17680	COG1842	Phage shock protein A
NDY24_17705	COG0754	glutathionylspermidine amidase activity
NDY24_17770	COG2197	response regulator
NDY24_17785	COG1113	amino acid transport
NDY24_17795	COG1271	oxidase subunit
NDY24_17800	COG1294	oxidase, subunit
NDY24_17810	COG2239	Acts as a magnesium transporter
NDY24_17815	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NDY24_17820	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NDY24_17840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
NDY24_17855	COG1137	ATPase activity
NDY24_17860	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NDY24_17870	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NDY24_17885	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NDY24_17965	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NDY24_17970	COG0084	hydrolase, TatD family'
NDY24_17985	COG1960	acyl-CoA dehydrogenase activity
NDY24_18000	COG0367	asparagine synthase
NDY24_18010	COG0305	Participates in initiation and elongation during chromosome replication
NDY24_18015	COG0415	Belongs to the DNA photolyase family
NDY24_18025	COG0583	DNA-binding transcription factor activity
NDY24_18040	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDY24_18070	COG3706	GGDEF domain
NDY24_18170	COG0556	nucleotide-excision repair
NDY24_18205	COG2948	multi-organism process
NDY24_18225	COG3702	type iv secretory pathway
NDY24_18240	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
NDY24_18245	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
NDY24_18260	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
NDY24_18265	COG0072	phenylalanine-tRNA ligase activity
NDY24_18265	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDY24_18315	COG0438	transferase activity, transferring glycosyl groups
NDY24_18320	COG0438	transferase activity, transferring glycosyl groups
NDY24_18330	COG0438	transferase activity, transferring glycosyl groups
NDY24_18355	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NDY24_18360	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDY24_18365	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NDY24_18385	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NDY24_18395	COG1960	acyl-CoA dehydrogenase activity
NDY24_18405	COG3040	lipid binding
NDY24_18425	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NDY24_18435	COG0784	Response regulator, receiver
NDY24_18435	COG4191	Histidine kinase
NDY24_18445	COG1194	a g-specific adenine glycosylase
NDY24_18460	COG3938	Belongs to the proline racemase family
NDY24_18480	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NDY24_18505	COG0531	amino acid
NDY24_18580	COG0742	ribosomal rna small subunit methyltransferase
NDY24_18595	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NDY24_18655	COG0343	queuine tRNA-ribosyltransferase activity
NDY24_18660	COG1862	Preprotein translocase
NDY24_18670	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NDY24_18720	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NDY24_18720	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NDY24_18725	COG1105	Belongs to the carbohydrate kinase PfkB family
NDY24_18730	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NDY24_18730	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NDY24_18735	COG1609	Transcriptional regulator
NDY24_18740	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDY24_18755	COG2902	Dehydrogenase
NDY24_18760	COG3321	synthase
NDY24_18760	COG0604	alcohol dehydrogenase
NDY24_18770	COG1902	pentaerythritol trinitrate reductase activity
NDY24_18780	COG0300	oxidoreductase activity
NDY24_18785	COG0604	alcohol dehydrogenase
NDY24_18795	COG0477	Major facilitator Superfamily
NDY24_18805	COG0784	Response regulator, receiver
NDY24_18805	COG2205	protein histidine kinase activity
NDY24_18805	COG5002	protein histidine kinase activity
NDY24_18810	COG2733	membrane
NDY24_18835	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
NDY24_18840	COG2223	nitrite transmembrane transporter activity
NDY24_18850	COG0243	molybdopterin cofactor binding
NDY24_18860	COG0477	Major facilitator Superfamily
NDY24_18870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDY24_18875	COG0174	glutamine synthetase
NDY24_18880	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
NDY24_18930	COG1177	transmembrane transport
NDY24_18945	COG1012	belongs to the aldehyde dehydrogenase family
NDY24_18960	COG4535	Mg2 and Co2 transporter CorC
NDY24_18970	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NDY24_18980	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NDY24_19000	COG0723	plastoquinol--plastocyanin reductase activity
NDY24_19005	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
NDY24_19015	COG0625	glutathione transferase activity
NDY24_19020	COG2969	positive regulation of protein catabolic process
NDY24_19035	COG2094	Belongs to the DNA glycosylase MPG family
NDY24_19040	COG2094	Belongs to the DNA glycosylase MPG family
NDY24_19050	COG0835	chemotaxis
NDY24_19055	COG2199	diguanylate cyclase activity
NDY24_19085	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NDY24_19100	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NDY24_19105	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NDY24_19105	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NDY24_19120	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NDY24_19140	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_19145	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDY24_19150	COG0501	Belongs to the peptidase M48B family
NDY24_19155	COG5001	Diguanylate cyclase
NDY24_19155	COG3300	MHYT domain
NDY24_19160	COG2081	HI0933 family
NDY24_19165	COG4681	YaeQ
NDY24_19170	COG1671	Belongs to the UPF0178 family
NDY24_19180	COG0625	glutathione transferase activity
NDY24_19190	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
NDY24_19200	COG0513	Belongs to the DEAD box helicase family
NDY24_19205	COG0488	(ABC) transporter
NDY24_19220	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NDY24_19225	COG0483	inositol monophosphate 1-phosphatase activity
NDY24_19260	COG0402	S-adenosylhomocysteine deaminase activity
NDY24_19265	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NDY24_19325	COG4302	ethanolamine ammonia-lyase activity
NDY24_19330	COG4303	Ethanolamine ammonia lyase large subunit
NDY24_19345	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
NDY24_19365	COG2166	iron-sulfur cluster assembly
NDY24_19370	COG0215	cysteine-tRNA ligase activity
NDY24_19380	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NDY24_19385	COG0137	argininosuccinate synthase activity
NDY24_19390	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NDY24_19395	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NDY24_19410	COG0165	Argininosuccinate lyase
NDY24_19425	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
NDY24_19465	COG4988	ABC transporter
NDY24_19510	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NDY24_19535	COG0436	Aminotransferase
NDY24_19540	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDY24_19555	COG1187	pseudouridine synthase activity
NDY24_19560	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
NDY24_19565	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
NDY24_19570	COG2350	Protein conserved in bacteria
NDY24_19595	COG1653	transport
NDY24_19600	COG1175	transmembrane transport
NDY24_19605	COG0395	ABC-type sugar transport system, permease component
NDY24_19630	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDY24_19635	COG2957	Belongs to the agmatine deiminase family
NDY24_19650	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
NDY24_19670	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
NDY24_19675	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NDY24_19685	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NDY24_19690	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDY24_19690	COG0475	glutathione-regulated potassium exporter activity
NDY24_19700	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NDY24_19715	COG0582	viral genome integration into host DNA
NDY24_19850	COG0840	transmembrane signaling receptor activity
NDY24_19870	COG0784	Response regulator, receiver
NDY24_19870	COG5002	protein histidine kinase activity
NDY24_19870	COG2205	protein histidine kinase activity
NDY24_19875	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
NDY24_19880	COG4191	Histidine kinase
NDY24_19880	COG0784	Response regulator, receiver
NDY24_19895	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDY24_19905	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NDY24_19915	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NDY24_19980	COG2244	polysaccharide biosynthetic process
NDY24_20010	COG2264	protein methyltransferase activity
NDY24_20020	COG0438	transferase activity, transferring glycosyl groups
NDY24_20035	COG1136	(ABC) transporter
NDY24_20040	COG1132	(ABC) transporter
NDY24_20045	COG0477	Major facilitator Superfamily
NDY24_20050	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDY24_20065	COG1253	flavin adenine dinucleotide binding
NDY24_20100	COG0504	CTP synthase activity
NDY24_20115	COG0148	phosphopyruvate hydratase activity
NDY24_20120	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NDY24_20125	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
NDY24_20130	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
NDY24_20140	COG2840	Smr protein MutS2
NDY24_20145	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NDY24_20150	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NDY24_20155	COG1238	metal cluster binding
NDY24_20170	COG1534	Rna-binding protein
NDY24_20175	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NDY24_20185	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NDY24_20190	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NDY24_20200	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NDY24_20205	COG1546	Belongs to the CinA family
NDY24_20210	COG4771	TonB-dependent receptor
NDY24_20215	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NDY24_20225	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NDY24_20230	COG2137	regulation of response to DNA damage stimulus
NDY24_20235	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NDY24_20240	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
NDY24_20255	COG1741	Belongs to the pirin family
NDY24_20260	COG0583	DNA-binding transcription factor activity
NDY24_20280	COG0352	thiamine-phosphate diphosphorylase activity
NDY24_20280	COG0351	phosphomethylpyrimidine kinase
NDY24_20295	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
NDY24_20300	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NDY24_20315	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NDY24_20325	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
NDY24_20340	COG4948	Mandelate Racemase Muconate Lactonizing
NDY24_20345	COG0800	Aldolase
NDY24_20380	COG1501	Belongs to the glycosyl hydrolase 31 family
NDY24_20390	COG1070	Carbohydrate kinase
NDY24_20395	COG2115	Belongs to the xylose isomerase family
NDY24_20400	COG0477	Major facilitator Superfamily
NDY24_20425	COG0860	N-Acetylmuramoyl-L-alanine amidase
NDY24_20450	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NDY24_20455	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
NDY24_20495	COG5001	Diguanylate cyclase
NDY24_20495	COG4251	negative regulation of phosphorylation
NDY24_20495	COG3706	GGDEF domain
NDY24_20495	COG2203	Gaf domain
NDY24_20500	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDY24_20505	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
NDY24_20515	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
NDY24_20520	COG0671	phosphoesterase, PA-phosphatase related
NDY24_20540	COG0697	spore germination
NDY24_20545	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NDY24_20565	COG1012	belongs to the aldehyde dehydrogenase family
NDY24_20575	COG3209	COG3209 Rhs family protein
NDY24_20610	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
NDY24_20615	COG0460	homoserine dehydrogenase
NDY24_20615	COG0527	aspartate kinase activity
NDY24_20645	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDY24_20660	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NDY24_20665	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NDY24_20670	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NDY24_20675	COG0131	Imidazoleglycerol-phosphate dehydratase
NDY24_20675	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NDY24_20685	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
NDY24_20690	COG0107	imidazoleglycerol-phosphate synthase activity
NDY24_20695	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NDY24_20695	COG0140	phosphoribosyl-ATP diphosphatase activity
NDY24_20710	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
NDY24_20725	COG0531	amino acid
NDY24_20730	COG0531	amino acid
NDY24_20740	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NDY24_20745	COG0277	FAD linked oxidase domain protein
NDY24_20765	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NDY24_20810	COG0505	Belongs to the CarA family
NDY24_20860	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NDY24_20865	COG0784	Response regulator, receiver
NDY24_20865	COG2198	Histidine kinase
NDY24_20865	COG2205	protein histidine kinase activity
NDY24_20870	COG0784	Response regulator, receiver
NDY24_20870	COG2198	Histidine kinase
NDY24_20870	COG2205	protein histidine kinase activity
NDY24_20875	COG1024	Enoyl-CoA hydratase
NDY24_20880	COG0318	PFAM AMP-dependent synthetase and ligase
NDY24_20910	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDY24_20925	COG2201	protein-glutamate methylesterase activity
NDY24_20940	COG0840	transmembrane signaling receptor activity
NDY24_20950	COG0835	chemotaxis
NDY24_20960	COG0840	transmembrane signaling receptor activity
NDY24_20980	COG0840	transmembrane signaling receptor activity
NDY24_20985	COG0840	transmembrane signaling receptor activity
NDY24_21015	COG0840	transmembrane signaling receptor activity
NDY24_21020	COG0643	Histidine kinase
NDY24_21020	COG2198	Histidine kinase
NDY24_21025	COG0745	RESPONSE REGULATOR receiver
NDY24_21035	COG0835	chemotaxis
NDY24_21040	COG1192	Involved in chromosome partitioning
NDY24_21050	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NDY24_21070	COG4771	TonB-dependent receptor
NDY24_21105	COG1169	isochorismate synthase
NDY24_21130	COG3433	isochorismatase activity
NDY24_21130	COG2226	methyltransferase
NDY24_21130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21145	COG3433	isochorismatase activity
NDY24_21145	COG2226	methyltransferase
NDY24_21145	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21155	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NDY24_21155	COG3321	synthase
NDY24_21155	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_21155	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21155	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NDY24_21165	COG0604	alcohol dehydrogenase
NDY24_21165	COG3321	synthase
NDY24_21185	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21185	COG2226	methyltransferase
NDY24_21185	COG3433	isochorismatase activity
NDY24_21190	COG3433	isochorismatase activity
NDY24_21190	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21190	COG2226	methyltransferase
NDY24_21195	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21195	COG2226	methyltransferase
NDY24_21195	COG3433	isochorismatase activity
NDY24_21200	COG3433	isochorismatase activity
NDY24_21200	COG2226	methyltransferase
NDY24_21200	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NDY24_21220	COG4771	TonB-dependent receptor
NDY24_21240	COG2375	cellular response to nickel ion
NDY24_21240	COG1132	(ABC) transporter
NDY24_21245	COG1132	(ABC) transporter
NDY24_21250	COG1132	(ABC) transporter
NDY24_21265	COG1132	(ABC) transporter
NDY24_21320	COG3300	MHYT domain
NDY24_21320	COG5001	Diguanylate cyclase
NDY24_21340	COG3190	flagellar
NDY24_21390	COG1677	Flagellar hook-basal body complex protein FliE
NDY24_21440	COG1028	Short-chain dehydrogenase reductase Sdr
NDY24_21445	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NDY24_21465	COG2201	protein-glutamate methylesterase activity
NDY24_21495	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NDY24_21500	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NDY24_21515	COG1705	Flagellar rod assembly protein muramidase FlgJ
NDY24_21515	COG3951	Flagellar rod assembly protein muramidase FlgJ
NDY24_21535	COG4787	bacterial-type flagellum-dependent cell motility
NDY24_21545	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NDY24_21550	COG1558	bacterial-type flagellum-dependent cell motility
NDY24_21560	COG0835	chemotaxis
NDY24_21560	COG0784	Response regulator, receiver
NDY24_21580	COG4191	Histidine kinase
NDY24_21620	COG0482	sulfurtransferase activity
NDY24_21635	COG0542	response to heat
NDY24_21645	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
NDY24_21655	COG0492	ferredoxin-NADP+ reductase activity
NDY24_21660	COG1674	ftsk spoiiie
NDY24_21675	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NDY24_21680	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NDY24_21685	COG0183	Belongs to the thiolase family
NDY24_21690	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDY24_21690	COG1024	Enoyl-CoA hydratase
NDY24_21705	COG0820	rRNA (adenine-C2-)-methyltransferase activity
NDY24_21715	COG1426	Protein conserved in bacteria
NDY24_21725	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDY24_21730	COG1160	GTP binding
NDY24_21735	COG0303	'Molybdopterin
NDY24_21740	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NDY24_21750	COG0708	Exodeoxyribonuclease III
NDY24_21760	COG0303	'Molybdopterin
NDY24_21765	COG0746	molybdenum cofactor guanylyltransferase activity
NDY24_21775	COG1648	precorrin-2 dehydrogenase activity
NDY24_21775	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NDY24_21785	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDY24_21790	COG2223	nitrite transmembrane transporter activity
NDY24_21795	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDY24_21805	COG0243	molybdopterin cofactor binding
NDY24_21825	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
NDY24_21835	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NDY24_21845	COG0579	oxidoreductase
NDY24_21850	COG3039	Transposase
NDY24_21865	COG3685	Protein conserved in bacteria
NDY24_21880	COG5001	Diguanylate cyclase
NDY24_21900	COG2205	protein histidine kinase activity
NDY24_21915	COG3713	MltA-interacting MipA family protein
NDY24_21955	COG0784	Response regulator, receiver
NDY24_21955	COG4191	Histidine kinase
NDY24_21995	COG3781	membrane
NDY24_22000	COG4191	Histidine kinase
NDY24_22005	COG2197	response regulator
NDY24_22035	COG0840	transmembrane signaling receptor activity
NDY24_22080	COG0488	(ABC) transporter
NDY24_22250	COG0653	protein targeting
NDY24_22265	COG2154	pterin-4-alpha-carbinolamine dehydratase
NDY24_22295	COG1054	Belongs to the UPF0176 family
NDY24_22320	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
NDY24_22420	COG1247	-acetyltransferase
NDY24_22435	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NDY24_22440	COG0322	excinuclease ABC activity
NDY24_22450	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NDY24_22455	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
NDY24_22460	COG1663	tetraacyldisaccharide 4'-kinase activity
NDY24_22465	COG1132	(ABC) transporter
NDY24_22475	COG0811	peptide transport
NDY24_22490	COG1136	(ABC) transporter
NDY24_22495	COG4591	ABC-type transport system involved in lipoprotein release permease component
NDY24_22505	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NDY24_22510	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NDY24_22525	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NDY24_22530	COG2009	succinate dehydrogenase
NDY24_22545	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NDY24_22550	COG0837	glucose binding
NDY24_22555	COG0363	glucosamine-6-phosphate deaminase activity
NDY24_22560	COG0129	dihydroxy-acid dehydratase activity
NDY24_22565	COG0800	Aldolase
NDY24_22615	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NDY24_22720	COG4962	Type ii secretion system protein e
NDY24_22940	COG0653	protein targeting
NDY24_22950	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NDY24_23005	COG4644	lycopene metabolic process
NDY24_23025	COG3451	type IV secretory pathway VirB4
NDY24_23030	COG3451	type IV secretory pathway VirB4
NDY24_23045	COG3846	protein secretion by the type IV secretion system
NDY24_23090	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NDY24_23095	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NDY24_23095	COG0551	DNA topoisomerase type I activity