locus-tag class description N8D55_00030 PF03594 Benzoate membrane transport protein N8D55_00040 PF01126 Heme oxygenase N8D55_00045 PF07690 Major Facilitator Superfamily N8D55_00060 PF02810 SEC-C motif N8D55_00065 PF01925 Sulfite exporter TauE/SafE N8D55_00075 PF07715 TonB-dependent Receptor Plug Domain N8D55_00075 PF00593 TonB dependent receptor N8D55_00115 PF07869 Protein of unknown function (DUF1656) N8D55_00125 PF02321 Outer membrane efflux protein N8D55_00135 PF00083 Sugar (and other) transporter N8D55_00210 PF00849 RNA pseudouridylate synthase N8D55_00220 PF13276 HTH-like domain N8D55_00220 PF13683 Integrase core domain N8D55_00225 PF00303 Thymidylate synthase N8D55_00260 PF06719 AraC-type transcriptional regulator N-terminus N8D55_00260 PF12833 Helix-turn-helix domain N8D55_00270 PF01381 Helix-turn-helix N8D55_00290 PF13361 UvrD-like helicase C-terminal domain N8D55_00290 PF00580 UvrD/REP helicase N-terminal domain N8D55_00290 PF12705 PD-(D/E)XK nuclease superfamily N8D55_00330 PF00005 ABC transporter N8D55_00335 PF02405 Permease MlaE N8D55_00340 PF02470 MlaD protein N8D55_00345 PF05494 MlaC protein N8D55_00355 PF04333 MlaA lipoprotein N8D55_00370 PF05199 GMC oxidoreductase N8D55_00370 PF00732 GMC oxidoreductase N8D55_00380 PF00255 Glutathione peroxidase N8D55_00390 PF02646 RmuC family N8D55_00395 PF13417 Glutathione S-transferase, N-terminal domain N8D55_00395 PF00043 Glutathione S-transferase, C-terminal domain N8D55_00400 PF13520 Amino acid permease N8D55_00410 PF05394 Avirulence protein N8D55_00425 PF00990 Diguanylate cyclase, GGDEF domain N8D55_00430 PF17853 GGDEF-like domain N8D55_00430 PF13556 PucR C-terminal helix-turn-helix domain N8D55_00430 PF05651 Putative sugar diacid recognition N8D55_00435 PF02595 Glycerate kinase family N8D55_00455 PF01804 Penicillin amidase N8D55_00460 PF01804 Penicillin amidase N8D55_00465 PF00593 TonB dependent receptor N8D55_00465 PF07715 TonB-dependent Receptor Plug Domain N8D55_00495 PF17785 PUA-like domain N8D55_00495 PF10672 S-adenosylmethionine-dependent methyltransferase N8D55_00500 PF03741 Integral membrane protein TerC family N8D55_00510 PF03009 Glycerophosphoryl diester phosphodiesterase family N8D55_00530 PF00593 TonB dependent receptor N8D55_00540 PF13340 Putative transposase of IS4/5 family (DUF4096) N8D55_00550 PF01926 50S ribosome-binding GTPase N8D55_00550 PF12631 MnmE helical domain N8D55_00550 PF10396 GTP-binding protein TrmE N-terminus N8D55_00555 PF14849 YidC periplasmic domain N8D55_00555 PF02096 60Kd inner membrane protein N8D55_00560 PF00825 Ribonuclease P N8D55_00565 PF00468 Ribosomal protein L34 N8D55_00570 PF11638 DnaA N-terminal domain N8D55_00570 PF08299 Bacterial dnaA protein helix-turn-helix N8D55_00570 PF00308 Bacterial dnaA protein N8D55_00575 PF02768 DNA polymerase III beta subunit, C-terminal domain N8D55_00575 PF00712 DNA polymerase III beta subunit, N-terminal domain N8D55_00575 PF02767 DNA polymerase III beta subunit, central domain N8D55_00580 PF02463 RecF/RecN/SMC N terminal domain N8D55_00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_00585 PF18053 DNA gyrase B subunit insert domain N8D55_00585 PF00204 DNA gyrase B N8D55_00585 PF00986 DNA gyrase B subunit, carboxyl terminus N8D55_00585 PF01751 Toprim domain N8D55_00595 PF01435 Peptidase family M48 N8D55_00605 PF03544 Gram-negative bacterial TonB protein C-terminal N8D55_00610 PF01618 MotA/TolQ/ExbB proton channel family N8D55_00615 PF02472 Biopolymer transport protein ExbD/TolR N8D55_00620 PF02472 Biopolymer transport protein ExbD/TolR N8D55_00630 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ N8D55_00640 PF13091 PLD-like domain N8D55_00640 PF13396 Phospholipase_D-nuclease N-terminal N8D55_00645 PF04055 Radical SAM superfamily N8D55_00660 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N8D55_00675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N8D55_00675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N8D55_00680 PF03572 Peptidase family S41 N8D55_00680 PF13180 PDZ domain N8D55_00695 PF04389 Peptidase family M28 N8D55_00720 PF00150 Cellulase (glycosyl hydrolase family 5) N8D55_00745 PF07992 Pyridine nucleotide-disulphide oxidoreductase N8D55_00745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N8D55_00750 PF04898 Glutamate synthase central domain N8D55_00750 PF01493 GXGXG motif N8D55_00750 PF01645 Conserved region in glutamate synthase N8D55_00750 PF00310 Glutamine amidotransferases class-II N8D55_00790 PF05726 Pirin C-terminal cupin domain N8D55_00790 PF02678 Pirin N8D55_00805 PF03466 LysR substrate binding domain N8D55_00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_00810 PF03466 LysR substrate binding domain N8D55_00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_00820 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain N8D55_00820 PF10091 Putative glucoamylase N8D55_00820 PF06165 Glycosyltransferase family 36 N8D55_00830 PF13180 PDZ domain N8D55_00880 PF00270 DEAD/DEAH box helicase N8D55_00880 PF09369 Domain of unknown function (DUF1998) N8D55_00880 PF00271 Helicase conserved C-terminal domain N8D55_00885 PF02661 Fic/DOC family N8D55_00885 PF13784 Fic/DOC family N-terminal N8D55_00920 PF03466 LysR substrate binding domain N8D55_00920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_00935 PF01638 HxlR-like helix-turn-helix N8D55_00970 PF13683 Integrase core domain N8D55_00970 PF13276 HTH-like domain N8D55_01060 PF01695 IstB-like ATP binding protein N8D55_01065 PF00665 Integrase core domain N8D55_01070 PF00665 Integrase core domain N8D55_01100 PF00144 Beta-lactamase N8D55_01110 PF05532 CsbD-like N8D55_01115 PF00196 Bacterial regulatory proteins, luxR family N8D55_01115 PF00072 Response regulator receiver domain N8D55_01135 PF01447 Thermolysin metallopeptidase, catalytic domain N8D55_01135 PF02868 Thermolysin metallopeptidase, alpha-helical domain N8D55_01135 PF16485 Protealysin propeptide N8D55_01145 PF13344 Haloacid dehalogenase-like hydrolase N8D55_01145 PF00293 NUDIX domain N8D55_01160 PF00085 Thioredoxin N8D55_01165 PF00083 Sugar (and other) transporter N8D55_01165 PF08946 Osmosensory transporter coiled coil N8D55_01205 PF17863 AAA lid domain N8D55_01205 PF07726 ATPase family associated with various cellular activities (AAA) N8D55_01255 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain N8D55_01260 PF00155 Aminotransferase class I and II N8D55_01265 PF07715 TonB-dependent Receptor Plug Domain N8D55_01265 PF00593 TonB dependent receptor N8D55_01275 PF07883 Cupin domain N8D55_01285 PF00171 Aldehyde dehydrogenase family N8D55_01335 PF01070 FMN-dependent dehydrogenase N8D55_01350 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family N8D55_01355 PF07730 Histidine kinase N8D55_01360 PF00072 Response regulator receiver domain N8D55_01360 PF00196 Bacterial regulatory proteins, luxR family N8D55_01385 PF07055 Enoyl reductase FAD binding domain N8D55_01385 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase N8D55_01385 PF12241 Trans-2-enoyl-CoA reductase catalytic region N8D55_01395 PF00294 pfkB family carbohydrate kinase N8D55_01410 PF01095 Pectinesterase N8D55_01560 PF04542 Sigma-70 region 2 N8D55_01560 PF08281 Sigma-70, region 4 N8D55_01585 PF00795 Carbon-nitrogen hydrolase N8D55_01585 PF02540 NAD synthase N8D55_01625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N8D55_01625 PF00128 Alpha amylase, catalytic domain N8D55_01625 PF02806 Alpha amylase, C-terminal all-beta domain N8D55_01655 PF13472 GDSL-like Lipase/Acylhydrolase family N8D55_01660 PF00135 Carboxylesterase family N8D55_01665 PF07859 alpha/beta hydrolase fold N8D55_01665 PF13472 GDSL-like Lipase/Acylhydrolase family N8D55_01675 PF03480 Bacterial extracellular solute-binding protein, family 7 N8D55_01690 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain N8D55_01690 PF04616 Glycosyl hydrolases family 43 N8D55_01700 PF00356 Bacterial regulatory proteins, lacI family N8D55_01705 PF04962 KduI/IolB family N8D55_01720 PF00657 GDSL-like Lipase/Acylhydrolase N8D55_01755 PF07715 TonB-dependent Receptor Plug Domain N8D55_01755 PF07660 Secretin and TonB N terminus short domain N8D55_01755 PF00593 TonB dependent receptor N8D55_01760 PF01734 Patatin-like phospholipase N8D55_01765 PF00005 ABC transporter N8D55_01785 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_01795 PF12867 DinB superfamily N8D55_01795 PF03781 Sulfatase-modifying factor enzyme 1 N8D55_01805 PF13657 HipA N-terminal domain N8D55_01805 PF07804 HipA-like C-terminal domain N8D55_01810 PF01381 Helix-turn-helix N8D55_01830 PF01883 Iron-sulfur cluster assembly protein N8D55_01830 PF10609 NUBPL iron-transfer P-loop NTPase N8D55_01845 PF13091 PLD-like domain N8D55_01850 PF03061 Thioesterase superfamily N8D55_01865 PF05598 Transposase domain (DUF772) N8D55_01865 PF01609 Transposase DDE domain N8D55_01885 PF02673 Bacitracin resistance protein BacA N8D55_01890 PF00120 Glutamine synthetase, catalytic domain N8D55_01890 PF03951 Glutamine synthetase, beta-Grasp domain N8D55_01895 PF00543 Nitrogen regulatory protein P-II N8D55_01900 PF00909 Ammonium Transporter Family N8D55_01920 PF00080 Copper/zinc superoxide dismutase (SODC) N8D55_01975 PF02556 Preprotein translocase subunit SecB N8D55_01980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus N8D55_01980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus N8D55_01990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N8D55_01990 PF00205 Thiamine pyrophosphate enzyme, central domain N8D55_01990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N8D55_01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_01995 PF00512 His Kinase A (phospho-acceptor) domain N8D55_02000 PF02954 Bacterial regulatory protein, Fis family N8D55_02000 PF00158 Sigma-54 interaction domain N8D55_02000 PF00072 Response regulator receiver domain N8D55_02020 PF00588 SpoU rRNA Methylase family N8D55_02035 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N8D55_02035 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N8D55_02040 PF02661 Fic/DOC family N8D55_02040 PF13784 Fic/DOC family N-terminal N8D55_02050 PF03692 Putative zinc- or iron-chelating domain N8D55_02055 PF00501 AMP-binding enzyme N8D55_02070 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family N8D55_02085 PF07478 D-ala D-ala ligase C-terminus N8D55_02085 PF01820 D-ala D-ala ligase N-terminus N8D55_02095 PF03109 ABC1 family N8D55_02100 PF00849 RNA pseudouridylate synthase N8D55_02110 PF00472 RF-1 domain N8D55_02120 PF01112 Asparaginase N8D55_02135 PF12706 Beta-lactamase superfamily domain N8D55_02155 PF00999 Sodium/hydrogen exchanger family N8D55_02160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_02160 PF03466 LysR substrate binding domain N8D55_02175 PF00990 Diguanylate cyclase, GGDEF domain N8D55_02200 PF00289 Biotin carboxylase, N-terminal domain N8D55_02200 PF00364 Biotin-requiring enzyme N8D55_02200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N8D55_02200 PF02785 Biotin carboxylase C-terminal domain N8D55_02265 PF02492 CobW/HypB/UreG, nucleotide-binding domain N8D55_02265 PF07683 Cobalamin synthesis protein cobW C-terminal domain N8D55_02305 PF01047 MarR family N8D55_02310 PF02566 OsmC-like protein N8D55_02315 PF12697 Alpha/beta hydrolase family N8D55_02335 PF00248 Aldo/keto reductase family N8D55_02340 PF00107 Zinc-binding dehydrogenase N8D55_02340 PF16884 N-terminal domain of oxidoreductase N8D55_02345 PF00248 Aldo/keto reductase family N8D55_02355 PF00849 RNA pseudouridylate synthase N8D55_02370 PF02203 Tar ligand binding domain homologue N8D55_02370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_02370 PF00672 HAMP domain N8D55_02375 PF07308 Protein of unknown function (DUF1456) N8D55_02380 PF00576 HIUase/Transthyretin family N8D55_02385 PF13454 FAD-NAD(P)-binding N8D55_02390 PF01014 Uricase N8D55_02390 PF09349 OHCU decarboxylase N8D55_02410 PF01546 Peptidase family M20/M25/M40 N8D55_02410 PF07687 Peptidase dimerisation domain N8D55_02420 PF07690 Major Facilitator Superfamily N8D55_02425 PF03466 LysR substrate binding domain N8D55_02425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_02430 PF00561 alpha/beta hydrolase fold N8D55_02465 PF01609 Transposase DDE domain N8D55_02465 PF05598 Transposase domain (DUF772) N8D55_02490 PF01425 Amidase N8D55_02495 PF01156 Inosine-uridine preferring nucleoside hydrolase N8D55_02510 PF00111 2Fe-2S iron-sulfur cluster binding domain N8D55_02515 PF00355 Rieske [2Fe-2S] domain N8D55_02520 PF03466 LysR substrate binding domain N8D55_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_02525 PF01026 TatD related DNase N8D55_02535 PF03466 LysR substrate binding domain N8D55_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_02550 PF00561 alpha/beta hydrolase fold N8D55_02570 PF02146 Sir2 family N8D55_02580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N8D55_02580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N8D55_02590 PF00551 Formyl transferase N8D55_02600 PF00072 Response regulator receiver domain N8D55_02600 PF00486 Transcriptional regulatory protein, C terminal N8D55_02610 PF00529 HlyD membrane-fusion protein of T1SS N8D55_02610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_02615 PF00873 AcrB/AcrD/AcrF family N8D55_02620 PF02321 Outer membrane efflux protein N8D55_02630 PF02219 Methylenetetrahydrofolate reductase N8D55_02635 PF02677 Epoxyqueuosine reductase QueH N8D55_02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_02640 PF03466 LysR substrate binding domain N8D55_02665 PF05368 NmrA-like family N8D55_02670 PF01638 HxlR-like helix-turn-helix N8D55_02770 PF01609 Transposase DDE domain N8D55_02770 PF05598 Transposase domain (DUF772) N8D55_02780 PF13276 HTH-like domain N8D55_02780 PF00665 Integrase core domain N8D55_02780 PF13333 Integrase core domain N8D55_02800 PF00920 Dehydratase family N8D55_02805 PF03692 Putative zinc- or iron-chelating domain N8D55_02810 PF00132 Bacterial transferase hexapeptide (six repeats) N8D55_02820 PF11871 Domain of unknown function (DUF3391) N8D55_02820 PF01966 HD domain N8D55_02840 PF00171 Aldehyde dehydrogenase family N8D55_02850 PF01494 FAD binding domain N8D55_02860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N8D55_02860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N8D55_02865 PF00230 Major intrinsic protein N8D55_02870 PF01266 FAD dependent oxidoreductase N8D55_02870 PF16901 C-terminal domain of alpha-glycerophosphate oxidase N8D55_02875 PF00455 DeoR C terminal sensor domain N8D55_02875 PF08220 DeoR-like helix-turn-helix domain N8D55_02885 PF00111 2Fe-2S iron-sulfur cluster binding domain N8D55_02885 PF00970 Oxidoreductase FAD-binding domain N8D55_02900 PF00355 Rieske [2Fe-2S] domain N8D55_02905 PF01144 Coenzyme A transferase N8D55_02910 PF01144 Coenzyme A transferase N8D55_02915 PF02803 Thiolase, C-terminal domain N8D55_02915 PF00108 Thiolase, N-terminal domain N8D55_02920 PF00775 Dioxygenase N8D55_02920 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal N8D55_02930 PF10397 Adenylosuccinate lyase C-terminus N8D55_02930 PF00206 Lyase N8D55_02935 PF12146 Serine aminopeptidase, S33 N8D55_02940 PF02627 Carboxymuconolactone decarboxylase family N8D55_02950 PF09339 IclR helix-turn-helix domain N8D55_02950 PF01614 Bacterial transcriptional regulator N8D55_02960 PF07859 alpha/beta hydrolase fold N8D55_02965 PF10677 Protein of unknown function (DUF2490) N8D55_02970 PF13932 GidA associated domain N8D55_02970 PF01134 Glucose inhibited division protein A N8D55_02980 PF00291 Pyridoxal-phosphate dependent enzyme N8D55_03005 PF13649 Methyltransferase domain N8D55_03025 PF04055 Radical SAM superfamily N8D55_03025 PF06968 Biotin and Thiamin Synthesis associated domain N8D55_03035 PF01040 UbiA prenyltransferase family N8D55_03060 PF00924 Mechanosensitive ion channel N8D55_03060 PF12795 Mechanosensitive ion channel porin domain N8D55_03060 PF12794 Mechanosensitive ion channel inner membrane domain 1 N8D55_03070 PF00884 Sulfatase N8D55_03090 PF00990 Diguanylate cyclase, GGDEF domain N8D55_03095 PF08323 Starch synthase catalytic domain N8D55_03095 PF00534 Glycosyl transferases group 1 N8D55_03100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N8D55_03100 PF02806 Alpha amylase, C-terminal all-beta domain N8D55_03100 PF00128 Alpha amylase, catalytic domain N8D55_03105 PF11941 Domain of unknown function (DUF3459) N8D55_03105 PF00128 Alpha amylase, catalytic domain N8D55_03105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N8D55_03110 PF02446 4-alpha-glucanotransferase N8D55_03125 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N8D55_03125 PF00128 Alpha amylase, catalytic domain N8D55_03130 PF13460 NAD(P)H-binding N8D55_03155 PF06903 VirK protein N8D55_03160 PF06903 VirK protein N8D55_03165 PF02321 Outer membrane efflux protein N8D55_03170 PF00440 Bacterial regulatory proteins, tetR family N8D55_03180 PF00873 AcrB/AcrD/AcrF family N8D55_03200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N8D55_03200 PF00364 Biotin-requiring enzyme N8D55_03200 PF02817 e3 binding domain N8D55_03210 PF02779 Transketolase, pyrimidine binding domain N8D55_03210 PF02780 Transketolase, C-terminal domain N8D55_03225 PF03301 Tryptophan 2,3-dioxygenase N8D55_03235 PF00854 POT family N8D55_03245 PF01047 MarR family N8D55_03250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N8D55_03255 PF04480 Protein of unknown function (DUF559) N8D55_03300 PF03334 Na+/H+ antiporter subunit N8D55_03305 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) N8D55_03315 PF00361 Proton-conducting membrane transporter N8D55_03320 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L N8D55_03340 PF01483 Proprotein convertase P-domain N8D55_03340 PF02868 Thermolysin metallopeptidase, alpha-helical domain N8D55_03340 PF07504 Fungalysin/Thermolysin Propeptide Motif N8D55_03340 PF01447 Thermolysin metallopeptidase, catalytic domain N8D55_03365 PF01259 SAICAR synthetase N8D55_03380 PF00834 Ribulose-phosphate 3 epimerase family N8D55_03390 PF00781 Diacylglycerol kinase catalytic domain N8D55_03395 PF00425 chorismate binding enzyme N8D55_03395 PF04715 Anthranilate synthase component I, N terminal region N8D55_03445 PF01609 Transposase DDE domain N8D55_03445 PF05598 Transposase domain (DUF772) N8D55_03525 PF01313 Bacterial export proteins, family 3 N8D55_03530 PF00813 FliP family N8D55_03545 PF00771 FHIPEP family N8D55_03565 PF01514 Secretory protein of YscJ/FliF family N8D55_03595 PF03958 Bacterial type II/III secretion system short domain N8D55_03595 PF00263 Bacterial type II and III secretion system protein N8D55_03605 PF01464 Transglycosylase SLT domain N8D55_03635 PF00117 Glutamine amidotransferase class-I N8D55_03645 PF02885 Glycosyl transferase family, helical bundle domain N8D55_03645 PF00591 Glycosyl transferase family, a/b domain N8D55_03650 PF00218 Indole-3-glycerol phosphate synthase N8D55_03660 PF00027 Cyclic nucleotide-binding domain N8D55_03660 PF00325 Bacterial regulatory proteins, crp family N8D55_03665 PF02675 S-adenosylmethionine decarboxylase N8D55_03670 PF00893 Small Multidrug Resistance protein N8D55_03675 PF03232 Ubiquinone biosynthesis protein COQ7 N8D55_03680 PF00572 Ribosomal protein L13 N8D55_03685 PF00380 Ribosomal protein S9/S16 N8D55_03700 PF00293 NUDIX domain N8D55_03710 PF00210 Ferritin-like domain N8D55_03720 PF00072 Response regulator receiver domain N8D55_03720 PF00486 Transcriptional regulatory protein, C terminal N8D55_03740 PF01521 Iron-sulphur cluster biosynthesis N8D55_03745 PF09297 NADH pyrophosphatase zinc ribbon domain N8D55_03745 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain N8D55_03745 PF00293 NUDIX domain N8D55_03770 PF07690 Major Facilitator Superfamily N8D55_03775 PF12805 FUSC-like inner membrane protein yccS N8D55_03780 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain N8D55_03780 PF02844 Phosphoribosylglycinamide synthetase, N domain N8D55_03780 PF02843 Phosphoribosylglycinamide synthetase, C domain N8D55_03815 PF02954 Bacterial regulatory protein, Fis family N8D55_03825 PF01381 Helix-turn-helix N8D55_03850 PF02785 Biotin carboxylase C-terminal domain N8D55_03850 PF00289 Biotin carboxylase, N-terminal domain N8D55_03850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N8D55_03860 PF00364 Biotin-requiring enzyme N8D55_03865 PF01220 Dehydroquinase class II N8D55_03885 PF03091 CutA1 divalent ion tolerance protein N8D55_03895 PF00166 Chaperonin 10 Kd subunit N8D55_03900 PF00118 TCP-1/cpn60 chaperonin family N8D55_03905 PF00271 Helicase conserved C-terminal domain N8D55_03905 PF00176 SNF2 family N-terminal domain N8D55_03910 PF00270 DEAD/DEAH box helicase N8D55_03910 PF13749 Putative ATP-dependent DNA helicase recG C-terminal N8D55_03910 PF17191 RecG wedge domain N8D55_03915 PF01555 DNA methylase N8D55_03935 PF01738 Dienelactone hydrolase family N8D55_03945 PF07715 TonB-dependent Receptor Plug Domain N8D55_03945 PF00593 TonB dependent receptor N8D55_03955 PF00793 DAHP synthetase I family N8D55_03985 PF16220 Domain of unknown function (DUF4880) N8D55_03985 PF04773 FecR protein N8D55_03990 PF04773 FecR protein N8D55_03990 PF16220 Domain of unknown function (DUF4880) N8D55_03995 PF07660 Secretin and TonB N terminus short domain N8D55_03995 PF00593 TonB dependent receptor N8D55_03995 PF07715 TonB-dependent Receptor Plug Domain N8D55_04000 PF07715 TonB-dependent Receptor Plug Domain N8D55_04000 PF07660 Secretin and TonB N terminus short domain N8D55_04000 PF00593 TonB dependent receptor N8D55_04020 PF08335 GlnD PII-uridylyltransferase N8D55_04020 PF03710 Glutamate-ammonia ligase adenylyltransferase N8D55_04030 PF02129 X-Pro dipeptidyl-peptidase (S15 family) N8D55_04035 PF02592 Putative vitamin uptake transporter N8D55_04055 PF00881 Nitroreductase family N8D55_04060 PF04264 YceI-like domain N8D55_04075 PF16957 Malonate decarboxylase, alpha subunit, transporter N8D55_04080 PF06857 Malonate decarboxylase delta subunit (MdcD) N8D55_04085 PF01039 Carboxyl transferase domain N8D55_04095 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG N8D55_04105 PF00698 Acyl transferase domain N8D55_04105 PF16197 Ketoacyl-synthetase C-terminal extension N8D55_04105 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_04105 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_04105 PF08659 KR domain N8D55_04105 PF00550 Phosphopantetheine attachment site N8D55_04130 PF01740 STAS domain N8D55_04160 PF07745 Glycosyl hydrolase family 53 N8D55_04165 PF17831 Pyruvate dehydrogenase E1 component middle domain N8D55_04165 PF00456 Transketolase, thiamine diphosphate binding domain N8D55_04195 PF13276 HTH-like domain N8D55_04195 PF13683 Integrase core domain N8D55_04300 PF07715 TonB-dependent Receptor Plug Domain N8D55_04300 PF00593 TonB dependent receptor N8D55_04305 PF00326 Prolyl oligopeptidase family N8D55_04350 PF13409 Glutathione S-transferase, N-terminal domain N8D55_04385 PF00326 Prolyl oligopeptidase family N8D55_04385 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region N8D55_04430 PF00892 EamA-like transporter family N8D55_04435 PF00497 Bacterial extracellular solute-binding proteins, family 3 N8D55_04450 PF00324 Amino acid permease N8D55_04455 PF01544 CorA-like Mg2+ transporter protein N8D55_04465 PF04616 Glycosyl hydrolases family 43 N8D55_04480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain N8D55_04480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain N8D55_04510 PF00553 Cellulose binding domain N8D55_04510 PF00150 Cellulase (glycosyl hydrolase family 5) N8D55_04515 PF01740 STAS domain N8D55_04515 PF00916 Sulfate permease family N8D55_04520 PF00990 Diguanylate cyclase, GGDEF domain N8D55_04550 PF06580 Histidine kinase N8D55_04550 PF07694 5TMR of 5TMR-LYT N8D55_04555 PF00072 Response regulator receiver domain N8D55_04555 PF04397 LytTr DNA-binding domain N8D55_04560 PF03900 Porphobilinogen deaminase, C-terminal domain N8D55_04560 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain N8D55_04590 PF00155 Aminotransferase class I and II N8D55_04600 PF04304 Protein of unknown function (DUF454) N8D55_04625 PF00227 Proteasome subunit N8D55_04630 PF00004 ATPase family associated with various cellular activities (AAA) N8D55_04630 PF07724 AAA domain (Cdc48 subfamily) N8D55_04630 PF10431 C-terminal, D2-small domain, of ClpB protein N8D55_04635 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N8D55_04635 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain N8D55_04645 PF13673 Acetyltransferase (GNAT) domain N8D55_04650 PF13533 Biotin-lipoyl like N8D55_04660 PF01209 ubiE/COQ5 methyltransferase family N8D55_04665 PF00563 EAL domain N8D55_04665 PF03707 Bacterial signalling protein N terminal repeat N8D55_04665 PF00990 Diguanylate cyclase, GGDEF domain N8D55_04690 PF00497 Bacterial extracellular solute-binding proteins, family 3 N8D55_04730 PF01925 Sulfite exporter TauE/SafE N8D55_04735 PF00171 Aldehyde dehydrogenase family N8D55_04740 PF00733 Asparagine synthase N8D55_04740 PF13537 Glutamine amidotransferase domain N8D55_04745 PF00483 Nucleotidyl transferase N8D55_04755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N8D55_04755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N8D55_04770 PF01590 GAF domain N8D55_04770 PF02954 Bacterial regulatory protein, Fis family N8D55_04770 PF00158 Sigma-54 interaction domain N8D55_04775 PF00294 pfkB family carbohydrate kinase N8D55_04790 PF04093 rod shape-determining protein MreD N8D55_04795 PF03717 Penicillin-binding Protein dimerisation domain N8D55_04795 PF00905 Penicillin binding protein transpeptidase domain N8D55_04825 PF00295 Glycosyl hydrolases family 28 N8D55_04835 PF05036 Sporulation related domain N8D55_04835 PF03330 Lytic transglycolase N8D55_04840 PF07943 Penicillin-binding protein 5, C-terminal domain N8D55_04840 PF00768 D-alanyl-D-alanine carboxypeptidase N8D55_04855 PF04359 Protein of unknown function (DUF493) N8D55_04860 PF03099 Biotin/lipoate A/B protein ligase family N8D55_04865 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family N8D55_04865 PF04055 Radical SAM superfamily N8D55_04870 PF11818 C-terminal domain of tail specific protease (DUF3340) N8D55_04870 PF00595 PDZ domain N8D55_04870 PF03572 Peptidase family S41 N8D55_04870 PF17804 Tail specific protease N-terminal domain N8D55_04915 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain N8D55_04915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N8D55_04920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N8D55_04920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N8D55_04925 PF04972 BON domain N8D55_04940 PF07519 Tannase and feruloyl esterase N8D55_04950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_04950 PF03466 LysR substrate binding domain N8D55_04960 PF00072 Response regulator receiver domain N8D55_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_04965 PF00512 His Kinase A (phospho-acceptor) domain N8D55_05010 PF00263 Bacterial type II and III secretion system protein N8D55_05010 PF03958 Bacterial type II/III secretion system short domain N8D55_05015 PF00437 Type II/IV secretion system protein N8D55_05020 PF00482 Type II secretion system (T2SS), protein F N8D55_05025 PF07963 Prokaryotic N-terminal methylation motif N8D55_05025 PF08334 Type II secretion system (T2SS), protein G N8D55_05030 PF12019 Type II transport protein GspH N8D55_05030 PF07963 Prokaryotic N-terminal methylation motif N8D55_05035 PF07963 Prokaryotic N-terminal methylation motif N8D55_05035 PF02501 Type II secretion system (T2SS), protein I N8D55_05040 PF07963 Prokaryotic N-terminal methylation motif N8D55_05040 PF11612 Type II secretion system (T2SS), protein J N8D55_05045 PF03934 Type II secretion system (T2SS), protein K N8D55_05090 PF00392 Bacterial regulatory proteins, gntR family N8D55_05090 PF07702 UTRA domain N8D55_05095 PF07690 Major Facilitator Superfamily N8D55_05110 PF01979 Amidohydrolase family N8D55_05125 PF12627 Probable RNA and SrmB- binding site of polymerase A N8D55_05125 PF01966 HD domain N8D55_05125 PF01743 Poly A polymerase head domain N8D55_05145 PF00732 GMC oxidoreductase N8D55_05145 PF05199 GMC oxidoreductase N8D55_05150 PF00171 Aldehyde dehydrogenase family N8D55_05165 PF01323 DSBA-like thioredoxin domain N8D55_05175 PF00034 Cytochrome c N8D55_05180 PF01926 50S ribosome-binding GTPase N8D55_05185 PF00753 Metallo-beta-lactamase superfamily N8D55_05185 PF10996 Beta-Casp domain N8D55_05185 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N8D55_05190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term N8D55_05190 PF12833 Helix-turn-helix domain N8D55_05205 PF00072 Response regulator receiver domain N8D55_05205 PF00486 Transcriptional regulatory protein, C terminal N8D55_05220 PF13581 Histidine kinase-like ATPase domain N8D55_05220 PF07536 HWE histidine kinase N8D55_05220 PF13426 PAS domain N8D55_05230 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_05230 PF00107 Zinc-binding dehydrogenase N8D55_05240 PF00756 Putative esterase N8D55_05245 PF00392 Bacterial regulatory proteins, gntR family N8D55_05245 PF00155 Aminotransferase class I and II N8D55_05255 PF00892 EamA-like transporter family N8D55_05265 PF02645 Uncharacterised protein, DegV family COG1307 N8D55_05295 PF01979 Amidohydrolase family N8D55_05310 PF00462 Glutaredoxin N8D55_05320 PF00593 TonB dependent receptor N8D55_05320 PF07715 TonB-dependent Receptor Plug Domain N8D55_05325 PF00593 TonB dependent receptor N8D55_05325 PF07715 TonB-dependent Receptor Plug Domain N8D55_05345 PF00155 Aminotransferase class I and II N8D55_05350 PF03193 RsgA GTPase N8D55_05375 PF00128 Alpha amylase, catalytic domain N8D55_05390 PF00356 Bacterial regulatory proteins, lacI family N8D55_05395 PF00106 short chain dehydrogenase N8D55_05400 PF03600 Citrate transporter N8D55_05410 PF00072 Response regulator receiver domain N8D55_05410 PF00486 Transcriptional regulatory protein, C terminal N8D55_05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_05415 PF00512 His Kinase A (phospho-acceptor) domain N8D55_05415 PF08521 Two-component sensor kinase N-terminal N8D55_05425 PF00072 Response regulator receiver domain N8D55_05425 PF00196 Bacterial regulatory proteins, luxR family N8D55_05435 PF07715 TonB-dependent Receptor Plug Domain N8D55_05435 PF00593 TonB dependent receptor N8D55_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_05440 PF03466 LysR substrate binding domain N8D55_05460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_05460 PF00512 His Kinase A (phospho-acceptor) domain N8D55_05470 PF00375 Sodium:dicarboxylate symporter family N8D55_05475 PF01515 Phosphate acetyl/butaryl transferase N8D55_05475 PF00390 Malic enzyme, N-terminal domain N8D55_05475 PF03949 Malic enzyme, NAD binding domain N8D55_05500 PF03279 Bacterial lipid A biosynthesis acyltransferase N8D55_05505 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) N8D55_05510 PF02321 Outer membrane efflux protein N8D55_05525 PF00990 Diguanylate cyclase, GGDEF domain N8D55_05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_05540 PF00694 Aconitase C-terminal domain N8D55_05545 PF08241 Methyltransferase domain N8D55_05550 PF00180 Isocitrate/isopropylmalate dehydrogenase N8D55_05555 PF00682 HMGL-like N8D55_05555 PF08502 LeuA allosteric (dimerisation) domain N8D55_05560 PF00291 Pyridoxal-phosphate dependent enzyme N8D55_05575 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain N8D55_05575 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain N8D55_05585 PF00672 HAMP domain N8D55_05585 PF02203 Tar ligand binding domain homologue N8D55_05585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_05590 PF07715 TonB-dependent Receptor Plug Domain N8D55_05590 PF00593 TonB dependent receptor N8D55_05595 PF13667 ThiC-associated domain N8D55_05595 PF01964 Radical SAM ThiC family N8D55_05600 PF00486 Transcriptional regulatory protein, C terminal N8D55_05600 PF18500 CadC C-terminal domain 1 N8D55_05605 PF12833 Helix-turn-helix domain N8D55_05610 PF07715 TonB-dependent Receptor Plug Domain N8D55_05610 PF00593 TonB dependent receptor N8D55_05630 PF03030 Inorganic H+ pyrophosphatase N8D55_05640 PF00365 Phosphofructokinase N8D55_05660 PF01062 Bestrophin, RFP-TM, chloride channel N8D55_05665 PF01569 PAP2 superfamily N8D55_05715 PF01593 Flavin containing amine oxidoreductase N8D55_05720 PF00034 Cytochrome c N8D55_05720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N8D55_05745 PF00202 Aminotransferase class-III N8D55_05755 PF02581 Thiamine monophosphate synthase N8D55_05760 PF00301 Rubredoxin N8D55_05765 PF13369 Transglutaminase-like superfamily N8D55_05775 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) N8D55_05785 PF01812 5-formyltetrahydrofolate cyclo-ligase family N8D55_05795 PF05164 Cell division protein ZapA N8D55_05805 PF03695 Uncharacterised protein family (UPF0149) N8D55_05810 PF05195 Aminopeptidase P, N-terminal domain N8D55_05810 PF00557 Metallopeptidase family M24 N8D55_05840 PF01725 Ham1 family N8D55_05845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N8D55_05850 PF03725 3' exoribonuclease family, domain 2 N8D55_05850 PF01138 3' exoribonuclease family, domain 1 N8D55_05855 PF08340 Domain of unknown function (DUF1732) N8D55_05855 PF03755 YicC-like family, N-terminal region N8D55_05860 PF00625 Guanylate kinase N8D55_05865 PF01192 RNA polymerase Rpb6 N8D55_05875 PF01042 Endoribonuclease L-PSP N8D55_05885 PF01156 Inosine-uridine preferring nucleoside hydrolase N8D55_05890 PF01197 Ribosomal protein L31 N8D55_05895 PF00285 Citrate synthase, C-terminal domain N8D55_05910 PF11104 Type IV pilus assembly protein PilM; N8D55_05915 PF05137 Fimbrial assembly protein (PilN) N8D55_05925 PF04351 Pilus assembly protein, PilP N8D55_05930 PF07660 Secretin and TonB N terminus short domain N8D55_05930 PF03958 Bacterial type II/III secretion system short domain N8D55_05930 PF00263 Bacterial type II and III secretion system protein N8D55_05930 PF11741 AMIN domain N8D55_05955 PF13519 von Willebrand factor type A domain N8D55_05955 PF07584 Aerotolerance regulator N-terminal N8D55_05980 PF07715 TonB-dependent Receptor Plug Domain N8D55_05980 PF00593 TonB dependent receptor N8D55_05985 PF03466 LysR substrate binding domain N8D55_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_06000 PF03734 L,D-transpeptidase catalytic domain N8D55_06000 PF01476 LysM domain N8D55_06020 PF03965 Penicillinase repressor N8D55_06035 PF00005 ABC transporter N8D55_06035 PF03459 TOBE domain N8D55_06040 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_06060 PF03922 OmpW family N8D55_06075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N8D55_06075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N8D55_06100 PF00162 Phosphoglycerate kinase N8D55_06110 PF02887 Pyruvate kinase, alpha/beta domain N8D55_06110 PF00224 Pyruvate kinase, barrel domain N8D55_06115 PF00274 Fructose-bisphosphate aldolase class-I N8D55_06120 PF01661 Macro domain N8D55_06130 PF00291 Pyridoxal-phosphate dependent enzyme N8D55_06135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N8D55_06135 PF14824 Sirohaem biosynthesis protein central N8D55_06135 PF10414 Sirohaem synthase dimerisation region N8D55_06140 PF03466 LysR substrate binding domain N8D55_06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_06155 PF00072 Response regulator receiver domain N8D55_06155 PF01627 Hpt domain N8D55_06155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_06155 PF00512 His Kinase A (phospho-acceptor) domain N8D55_06175 PF01507 Phosphoadenosine phosphosulfate reductase family N8D55_06190 PF01507 Phosphoadenosine phosphosulfate reductase family N8D55_06205 PF00873 AcrB/AcrD/AcrF family N8D55_06215 PF05598 Transposase domain (DUF772) N8D55_06215 PF01609 Transposase DDE domain N8D55_06230 PF00202 Aminotransferase class-III N8D55_06260 PF05598 Transposase domain (DUF772) N8D55_06260 PF01609 Transposase DDE domain N8D55_06270 PF11838 ERAP1-like C-terminal domain N8D55_06270 PF01433 Peptidase family M1 domain N8D55_06275 PF00588 SpoU rRNA Methylase family N8D55_06275 PF08032 RNA 2'-O ribose methyltransferase substrate binding N8D55_06280 PF00135 Carboxylesterase family N8D55_06290 PF10566 Glycoside hydrolase 97 N8D55_06290 PF14508 Glycosyl-hydrolase 97 N-terminal N8D55_06290 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation N8D55_06305 PF00356 Bacterial regulatory proteins, lacI family N8D55_06315 PF01741 Large-conductance mechanosensitive channel, MscL N8D55_06320 PF01557 Fumarylacetoacetate (FAA) hydrolase family N8D55_06335 PF03600 Citrate transporter N8D55_06335 PF02080 TrkA-C domain N8D55_06340 PF02390 Putative methyltransferase N8D55_06345 PF05690 Thiazole biosynthesis protein ThiG N8D55_06355 PF00657 GDSL-like Lipase/Acylhydrolase N8D55_06355 PF03797 Autotransporter beta-domain N8D55_06385 PF00709 Adenylosuccinate synthetase N8D55_06420 PF13276 HTH-like domain N8D55_06420 PF13683 Integrase core domain N8D55_06425 PF05114 Protein of unknown function (DUF692) N8D55_06525 PF00069 Protein kinase domain N8D55_06525 PF03793 PASTA domain N8D55_06530 PF00069 Protein kinase domain N8D55_06530 PF03793 PASTA domain N8D55_06570 PF13683 Integrase core domain N8D55_06570 PF13276 HTH-like domain N8D55_06610 PF00664 ABC transporter transmembrane region N8D55_06610 PF00005 ABC transporter N8D55_06610 PF03412 Peptidase C39 family N8D55_06620 PF07690 Major Facilitator Superfamily N8D55_06625 PF02794 RTX toxin acyltransferase family N8D55_06645 PF05598 Transposase domain (DUF772) N8D55_06645 PF01609 Transposase DDE domain N8D55_06695 PF06114 IrrE N-terminal-like domain N8D55_06705 PF00144 Beta-lactamase N8D55_06710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_06710 PF03466 LysR substrate binding domain N8D55_06715 PF09335 SNARE associated Golgi protein N8D55_06765 PF08443 RimK-like ATP-grasp domain N8D55_06765 PF18030 RimK PreATP-grasp domain N8D55_06770 PF00072 Response regulator receiver domain N8D55_06770 PF00486 Transcriptional regulatory protein, C terminal N8D55_06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_06775 PF00512 His Kinase A (phospho-acceptor) domain N8D55_06775 PF00989 PAS fold N8D55_06775 PF11808 Phosphate regulon sensor protein PhoR N8D55_06795 PF01121 Dephospho-CoA kinase N8D55_06800 PF01478 Type IV leader peptidase family N8D55_06800 PF06750 Bacterial Peptidase A24 N-terminal domain N8D55_06810 PF00114 Pilin (bacterial filament) N8D55_06810 PF07963 Prokaryotic N-terminal methylation motif N8D55_06815 PF08019 Phosphoethanolamine transferase EptA/EptB N8D55_06815 PF00884 Sulfatase N8D55_06835 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain N8D55_06835 PF00437 Type II/IV secretion system protein N8D55_06840 PF02661 Fic/DOC family N8D55_06850 PF02954 Bacterial regulatory protein, Fis family N8D55_06850 PF00072 Response regulator receiver domain N8D55_06850 PF00158 Sigma-54 interaction domain N8D55_06860 PF00549 CoA-ligase N8D55_06860 PF08442 ATP-grasp domain N8D55_06865 PF00549 CoA-ligase N8D55_06865 PF02629 CoA binding domain N8D55_06870 PF03466 LysR substrate binding domain N8D55_06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_06910 PF13525 Outer membrane lipoprotein N8D55_06915 PF00849 RNA pseudouridylate synthase N8D55_06920 PF02578 Multi-copper polyphenol oxidoreductase laccase N8D55_06930 PF04134 Protein of unknown function, DUF393 N8D55_06935 PF02203 Tar ligand binding domain homologue N8D55_06935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_06935 PF00672 HAMP domain N8D55_06940 PF01011 PQQ enzyme repeat N8D55_06945 PF00982 Glycosyltransferase family 20 N8D55_06960 PF00593 TonB dependent receptor N8D55_06960 PF07715 TonB-dependent Receptor Plug Domain N8D55_06995 PF01541 GIY-YIG catalytic domain N8D55_07000 PF07715 TonB-dependent Receptor Plug Domain N8D55_07000 PF00593 TonB dependent receptor N8D55_07010 PF00248 Aldo/keto reductase family N8D55_07015 PF09084 NMT1/THI5 like N8D55_07020 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_07025 PF00005 ABC transporter N8D55_07030 PF02861 Clp amino terminal domain, pathogenicity island component N8D55_07030 PF17871 AAA lid domain N8D55_07030 PF07724 AAA domain (Cdc48 subfamily) N8D55_07030 PF10431 C-terminal, D2-small domain, of ClpB protein N8D55_07030 PF00004 ATPase family associated with various cellular activities (AAA) N8D55_07040 PF07715 TonB-dependent Receptor Plug Domain N8D55_07040 PF00593 TonB dependent receptor N8D55_07055 PF02277 Phosphoribosyltransferase N8D55_07085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N8D55_07085 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N8D55_07090 PF06276 Ferric iron reductase FhuF-like transporter N8D55_07090 PF04183 IucA / IucC family N8D55_07095 PF07690 Major Facilitator Superfamily N8D55_07100 PF06276 Ferric iron reductase FhuF-like transporter N8D55_07100 PF04183 IucA / IucC family N8D55_07110 PF07715 TonB-dependent Receptor Plug Domain N8D55_07110 PF07660 Secretin and TonB N terminus short domain N8D55_07110 PF00593 TonB dependent receptor N8D55_07125 PF00067 Cytochrome P450 N8D55_07130 PF00593 TonB dependent receptor N8D55_07130 PF07715 TonB-dependent Receptor Plug Domain N8D55_07135 PF07715 TonB-dependent Receptor Plug Domain N8D55_07135 PF00593 TonB dependent receptor N8D55_07145 PF12848 ABC transporter N8D55_07145 PF00005 ABC transporter N8D55_07195 PF01709 Transcriptional regulator N8D55_07205 PF01330 RuvA N terminal domain N8D55_07205 PF07499 RuvA, C-terminal domain N8D55_07210 PF02705 K+ potassium transporter N8D55_07215 PF05491 RuvB C-terminal winged helix domain N8D55_07215 PF17864 RuvB AAA lid domain N8D55_07215 PF05496 Holliday junction DNA helicase RuvB P-loop domain N8D55_07220 PF03061 Thioesterase superfamily N8D55_07225 PF01618 MotA/TolQ/ExbB proton channel family N8D55_07240 PF07676 WD40-like Beta Propeller Repeat N8D55_07240 PF04052 TolB amino-terminal domain N8D55_07245 PF00691 OmpA family N8D55_07260 PF00248 Aldo/keto reductase family N8D55_07305 PF01479 S4 domain N8D55_07305 PF00849 RNA pseudouridylate synthase N8D55_07320 PF09382 RQC domain N8D55_07320 PF16124 RecQ zinc-binding N8D55_07320 PF00570 HRDC domain N8D55_07320 PF00271 Helicase conserved C-terminal domain N8D55_07320 PF00270 DEAD/DEAH box helicase N8D55_07325 PF00210 Ferritin-like domain N8D55_07350 PF13186 Iron-sulfur cluster-binding domain N8D55_07350 PF04055 Radical SAM superfamily N8D55_07355 PF05402 Coenzyme PQQ synthesis protein D (PqqD) N8D55_07365 PF12706 Beta-lactamase superfamily domain N8D55_07370 PF08042 PqqA family N8D55_07375 PF02824 TGS domain N8D55_07375 PF04607 Region found in RelA / SpoT proteins N8D55_07375 PF13291 ACT domain N8D55_07385 PF00535 Glycosyl transferase family 2 N8D55_07390 PF14814 Bifunctional transglycosylase second domain N8D55_07390 PF00905 Penicillin binding protein transpeptidase domain N8D55_07390 PF00912 Transglycosylase N8D55_07405 PF00814 Glycoprotease family N8D55_07415 PF02951 Prokaryotic glutathione synthetase, N-terminal domain N8D55_07415 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain N8D55_07420 PF00072 Response regulator receiver domain N8D55_07425 PF00072 Response regulator receiver domain N8D55_07430 PF01584 CheW-like domain N8D55_07435 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term N8D55_07435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_07440 PF01584 CheW-like domain N8D55_07440 PF00072 Response regulator receiver domain N8D55_07440 PF01627 Hpt domain N8D55_07440 PF02895 Signal transducing histidine kinase, homodimeric domain N8D55_07445 PF01339 CheB methylesterase N8D55_07445 PF00072 Response regulator receiver domain N8D55_07455 PF13302 Acetyltransferase (GNAT) domain N8D55_07480 PF00092 von Willebrand factor type A domain N8D55_07480 PF12450 von Willebrand factor N8D55_07480 PF12034 Domain of unknown function (DUF3520) N8D55_07485 PF01112 Asparaginase N8D55_07490 PF03932 CutC family N8D55_07515 PF18766 SWI2/SNF2 ATPase N8D55_07515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N8D55_07515 PF11867 Domain of unknown function (DUF3387) N8D55_07525 PF01420 Type I restriction modification DNA specificity domain N8D55_07535 PF12161 HsdM N-terminal domain N8D55_07535 PF02384 N-6 DNA Methylase N8D55_07570 PF01301 Glycosyl hydrolases family 35 N8D55_07575 PF07971 Glycosyl hydrolase family 92 N8D55_07575 PF17678 Glycosyl hydrolase family 92 N-terminal domain N8D55_07585 PF02056 Family 4 glycosyl hydrolase N8D55_07585 PF11975 Family 4 glycosyl hydrolase C-terminal domain N8D55_07595 PF13520 Amino acid permease N8D55_07600 PF01301 Glycosyl hydrolases family 35 N8D55_07610 PF07691 PA14 domain N8D55_07610 PF01915 Glycosyl hydrolase family 3 C-terminal domain N8D55_07610 PF00933 Glycosyl hydrolase family 3 N terminal domain N8D55_07610 PF14310 Fibronectin type III-like domain N8D55_07625 PF07691 PA14 domain N8D55_07625 PF00728 Glycosyl hydrolase family 20, catalytic domain N8D55_07625 PF02838 Glycosyl hydrolase family 20, domain 2 N8D55_07655 PF00202 Aminotransferase class-III N8D55_07660 PF00293 NUDIX domain N8D55_07665 PF00459 Inositol monophosphatase family N8D55_07670 PF03819 MazG nucleotide pyrophosphohydrolase domain N8D55_07675 PF02694 Uncharacterised BCR, YnfA/UPF0060 family N8D55_07685 PF01597 Glycine cleavage H-protein N8D55_07710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N8D55_07710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N8D55_07710 PF09317 Domain of unknown function (DUF1974) N8D55_07715 PF00561 alpha/beta hydrolase fold N8D55_07740 PF00912 Transglycosylase N8D55_07745 PF00535 Glycosyl transferase family 2 N8D55_07750 PF00571 CBS domain N8D55_07750 PF00478 IMP dehydrogenase / GMP reductase domain N8D55_07755 PF01548 Transposase N8D55_07755 PF02371 Transposase IS116/IS110/IS902 family N8D55_07775 PF01551 Peptidase family M23 N8D55_07775 PF08460 Bacterial SH3 domain N8D55_07780 PF00561 alpha/beta hydrolase fold N8D55_07785 PF01053 Cys/Met metabolism PLP-dependent enzyme N8D55_07790 PF00696 Amino acid kinase family N8D55_07790 PF00742 Homoserine dehydrogenase N8D55_07790 PF03447 Homoserine dehydrogenase, NAD binding domain N8D55_07795 PF12697 Alpha/beta hydrolase family N8D55_07815 PF00313 'Cold-shock' DNA-binding domain N8D55_07825 PF01292 Prokaryotic cytochrome b561 N8D55_07830 PF04264 YceI-like domain N8D55_07855 PF01208 Uroporphyrinogen decarboxylase (URO-D) N8D55_07865 PF01761 3-dehydroquinate synthase N8D55_07875 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region N8D55_07875 PF01243 Pyridoxamine 5'-phosphate oxidase N8D55_07880 PF00583 Acetyltransferase (GNAT) family N8D55_07890 PF04012 PspA/IM30 family N8D55_07915 PF03738 Glutathionylspermidine synthase preATP-grasp N8D55_07925 PF09278 MerR, DNA binding N8D55_07925 PF00376 MerR family regulatory protein N8D55_07955 PF04820 Tryptophan halogenase N8D55_07960 PF12706 Beta-lactamase superfamily domain N8D55_07975 PF00324 Amino acid permease N8D55_07985 PF00561 alpha/beta hydrolase fold N8D55_07990 PF00544 Pectate lyase N8D55_07995 PF00324 Amino acid permease N8D55_08005 PF01654 Cytochrome bd terminal oxidase subunit I N8D55_08010 PF02322 Cytochrome bd terminal oxidase subunit II N8D55_08015 PF00756 Putative esterase N8D55_08020 PF03448 MgtE intracellular N domain N8D55_08020 PF01769 Divalent cation transporter N8D55_08020 PF00571 CBS domain N8D55_08030 PF00381 PTS HPr component phosphorylation site N8D55_08040 PF03668 P-loop ATPase protein family N8D55_08045 PF02603 HPr Serine kinase N terminus N8D55_08045 PF07475 HPr Serine kinase C-terminal domain N8D55_08050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N8D55_08060 PF04963 Sigma-54 factor, core binding domain N8D55_08060 PF04552 Sigma-54, DNA binding domain N8D55_08060 PF00309 Sigma-54 factor, Activator interacting domain (AID) N8D55_08065 PF00005 ABC transporter N8D55_08070 PF03968 OstA-like protein N8D55_08115 PF00551 Formyl transferase N8D55_08125 PF00586 AIR synthase related protein, N-terminal domain N8D55_08125 PF02769 AIR synthase related protein, C-terminal domain N8D55_08135 PF01594 AI-2E family transporter N8D55_08140 PF00308 Bacterial dnaA protein N8D55_08160 PF00313 'Cold-shock' DNA-binding domain N8D55_08175 PF00899 ThiF family N8D55_08180 PF01026 TatD related DNase N8D55_08195 PF02770 Acyl-CoA dehydrogenase, middle domain N8D55_08195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N8D55_08195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N8D55_08205 PF00043 Glutathione S-transferase, C-terminal domain N8D55_08205 PF02798 Glutathione S-transferase, N-terminal domain N8D55_08210 PF13537 Glutamine amidotransferase domain N8D55_08210 PF00733 Asparagine synthase N8D55_08215 PF03358 NADPH-dependent FMN reductase N8D55_08220 PF03796 DnaB-like helicase C terminal domain N8D55_08220 PF00772 DnaB-like helicase N terminal domain N8D55_08230 PF00691 OmpA family N8D55_08230 PF05736 OprF membrane domain N8D55_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_08235 PF03466 LysR substrate binding domain N8D55_08255 PF00873 AcrB/AcrD/AcrF family N8D55_08260 PF00106 short chain dehydrogenase N8D55_08265 PF02321 Outer membrane efflux protein N8D55_08270 PF00990 Diguanylate cyclase, GGDEF domain N8D55_08280 PF00990 Diguanylate cyclase, GGDEF domain N8D55_08380 PF07963 Prokaryotic N-terminal methylation motif N8D55_08380 PF00114 Pilin (bacterial filament) N8D55_08385 PF17757 UvrB interaction domain N8D55_08385 PF02151 UvrB/uvrC motif N8D55_08385 PF04851 Type III restriction enzyme, res subunit N8D55_08385 PF00271 Helicase conserved C-terminal domain N8D55_08385 PF12344 Ultra-violet resistance protein B N8D55_08400 PF02534 Type IV secretory system Conjugative DNA transfer N8D55_08425 PF00437 Type II/IV secretion system protein N8D55_08455 PF02824 TGS domain N8D55_08455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N8D55_08455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N8D55_08455 PF03129 Anticodon binding domain N8D55_08460 PF00707 Translation initiation factor IF-3, C-terminal domain N8D55_08460 PF05198 Translation initiation factor IF-3, N-terminal domain N8D55_08465 PF01632 Ribosomal protein L35 N8D55_08470 PF00453 Ribosomal protein L20 N8D55_08475 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain N8D55_08475 PF01409 tRNA synthetases class II core domain (F) N8D55_08480 PF03483 B3/4 domain N8D55_08480 PF03484 tRNA synthetase B5 domain N8D55_08480 PF03147 Ferredoxin-fold anticodon binding domain N8D55_08480 PF01588 Putative tRNA binding domain N8D55_08480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain N8D55_08485 PF00216 Bacterial DNA-binding protein N8D55_08490 PF13411 MerR HTH family regulatory protein N8D55_08510 PF02397 Bacterial sugar transferase N8D55_08540 PF14667 Polysaccharide biosynthesis C-terminal domain N8D55_08555 PF03808 Glycosyl transferase WecB/TagA/CpsF family N8D55_08570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N8D55_08570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N8D55_08575 PF16123 Hydroxyacylglutathione hydrolase C-terminus N8D55_08575 PF00753 Metallo-beta-lactamase superfamily N8D55_08580 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family N8D55_08600 PF02780 Transketolase, C-terminal domain N8D55_08600 PF02779 Transketolase, pyrimidine binding domain N8D55_08600 PF13292 1-deoxy-D-xylulose-5-phosphate synthase N8D55_08610 PF02770 Acyl-CoA dehydrogenase, middle domain N8D55_08610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N8D55_08610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N8D55_08610 PF12806 Acetyl-CoA dehydrogenase C-terminal like N8D55_08620 PF08212 Lipocalin-like domain N8D55_08645 PF00893 Small Multidrug Resistance protein N8D55_08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_08650 PF13426 PAS domain N8D55_08650 PF00072 Response regulator receiver domain N8D55_08655 PF04362 Bacterial Fe(2+) trafficking N8D55_08660 PF14815 NUDIX domain N8D55_08660 PF10576 Iron-sulfur binding domain of endonuclease III N8D55_08660 PF00730 HhH-GPD superfamily base excision DNA repair protein N8D55_08660 PF00633 Helix-hairpin-helix motif N8D55_08665 PF00448 SRP54-type protein, GTPase domain N8D55_08665 PF02881 SRP54-type protein, helical bundle domain N8D55_08690 PF07992 Pyridine nucleotide-disulphide oxidoreductase N8D55_08690 PF04324 BFD-like [2Fe-2S] binding domain N8D55_08695 PF00701 Dihydrodipicolinate synthetase family N8D55_08705 PF01321 Creatinase/Prolidase N-terminal domain N8D55_08705 PF00557 Metallopeptidase family M24 N8D55_08760 PF07715 TonB-dependent Receptor Plug Domain N8D55_08760 PF00593 TonB dependent receptor N8D55_08770 PF07532 Bacterial Ig-like domain (group 4) N8D55_08805 PF01467 Cytidylyltransferase-like N8D55_08815 PF00037 4Fe-4S binding domain N8D55_08830 PF00759 Glycosyl hydrolase family 9 N8D55_08830 PF02927 Cellulase N-terminal ig-like domain N8D55_08870 PF02547 Queuosine biosynthesis protein N8D55_08885 PF07549 SecD/SecF GG Motif N8D55_08885 PF13721 SecD export protein N-terminal TM region N8D55_08885 PF02355 Protein export membrane protein N8D55_08890 PF02355 Protein export membrane protein N8D55_08890 PF07549 SecD/SecF GG Motif N8D55_08895 PF13683 Integrase core domain N8D55_08895 PF13276 HTH-like domain N8D55_08940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N8D55_08945 PF00294 pfkB family carbohydrate kinase N8D55_08950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N8D55_08950 PF00381 PTS HPr component phosphorylation site N8D55_08950 PF02896 PEP-utilising enzyme, TIM barrel domain N8D55_08950 PF00391 PEP-utilising enzyme, mobile domain N8D55_08950 PF05524 PEP-utilising enzyme, N-terminal N8D55_08955 PF00356 Bacterial regulatory proteins, lacI family N8D55_08960 PF00873 AcrB/AcrD/AcrF family N8D55_08965 PF00529 HlyD membrane-fusion protein of T1SS N8D55_08965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_08975 PF05088 Bacterial NAD-glutamate dehydrogenase N8D55_08985 PF14765 Polyketide synthase dehydratase N8D55_08985 PF00550 Phosphopantetheine attachment site N8D55_08985 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_08985 PF16197 Ketoacyl-synthetase C-terminal extension N8D55_08985 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_08985 PF00698 Acyl transferase domain N8D55_08985 PF08659 KR domain N8D55_08985 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_08990 PF00106 short chain dehydrogenase N8D55_08995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N8D55_09000 PF00440 Bacterial regulatory proteins, tetR family N8D55_09005 PF00106 short chain dehydrogenase N8D55_09010 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_09010 PF00107 Zinc-binding dehydrogenase N8D55_09020 PF07690 Major Facilitator Superfamily N8D55_09035 PF04286 Protein of unknown function (DUF445) N8D55_09050 PF00005 ABC transporter N8D55_09060 PF00202 Aminotransferase class-III N8D55_09070 PF02634 FdhD/NarQ family N8D55_09095 PF01266 FAD dependent oxidoreductase N8D55_09100 PF00120 Glutamine synthetase, catalytic domain N8D55_09110 PF00120 Glutamine synthetase, catalytic domain N8D55_09120 PF13416 Bacterial extracellular solute-binding protein N8D55_09125 PF13533 Biotin-lipoyl like N8D55_09135 PF02321 Outer membrane efflux protein N8D55_09140 PF00005 ABC transporter N8D55_09140 PF08402 TOBE domain N8D55_09150 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_09155 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_09170 PF00171 Aldehyde dehydrogenase family N8D55_09185 PF00571 CBS domain N8D55_09185 PF03471 Transporter associated domain N8D55_09200 PF02562 PhoH-like protein N8D55_09220 PF01464 Transglycosylase SLT domain N8D55_09235 PF02167 Cytochrome C1 family N8D55_09245 PF04386 Stringent starvation protein B N8D55_09260 PF02245 Methylpurine-DNA glycosylase (MPG) N8D55_09265 PF12729 Four helix bundle sensory module for signal transduction N8D55_09265 PF00672 HAMP domain N8D55_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_09270 PF01584 CheW-like domain N8D55_09275 PF07694 5TMR of 5TMR-LYT N8D55_09275 PF00990 Diguanylate cyclase, GGDEF domain N8D55_09305 PF03781 Sulfatase-modifying factor enzyme 1 N8D55_09315 PF02601 Exonuclease VII, large subunit N8D55_09315 PF13742 OB-fold nucleic acid binding domain N8D55_09325 PF01256 Carbohydrate kinase N8D55_09325 PF03853 YjeF-related protein N-terminus N8D55_09355 PF05233 PHB accumulation regulatory domain N8D55_09355 PF07879 PHB/PHA accumulation regulator DNA-binding domain N8D55_09360 PF00106 short chain dehydrogenase N8D55_09365 PF00749 tRNA synthetases class I (E and Q), catalytic domain N8D55_09370 PF01435 Peptidase family M48 N8D55_09385 PF07152 YaeQ protein N8D55_09390 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 N8D55_09395 PF00313 'Cold-shock' DNA-binding domain N8D55_09400 PF14497 Glutathione S-transferase, C-terminal domain N8D55_09400 PF02798 Glutathione S-transferase, N-terminal domain N8D55_09415 PF00156 Phosphoribosyl transferase domain N8D55_09420 PF03880 DbpA RNA binding domain N8D55_09420 PF00270 DEAD/DEAH box helicase N8D55_09420 PF00271 Helicase conserved C-terminal domain N8D55_09440 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N8D55_09440 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N8D55_09445 PF00459 Inositol monophosphatase family N8D55_09450 PF00588 SpoU rRNA Methylase family N8D55_09460 PF03707 Bacterial signalling protein N terminal repeat N8D55_09460 PF00990 Diguanylate cyclase, GGDEF domain N8D55_09460 PF13188 PAS domain N8D55_09460 PF00563 EAL domain N8D55_09465 PF04055 Radical SAM superfamily N8D55_09470 PF09285 Elongation factor P, C-terminal N8D55_09470 PF08207 Elongation factor P (EF-P) KOW-like domain N8D55_09470 PF01132 Elongation factor P (EF-P) OB domain N8D55_09490 PF13419 Haloacid dehalogenase-like hydrolase N8D55_09545 PF05985 Ethanolamine ammonia-lyase light chain (EutC) N8D55_09550 PF06751 Ethanolamine ammonia lyase large subunit (EutB) N8D55_09560 PF01551 Peptidase family M23 N8D55_09560 PF08460 Bacterial SH3 domain N8D55_09570 PF01809 Putative membrane protein insertion efficiency factor N8D55_09575 PF01258 Prokaryotic dksA/traR C4-type zinc finger N8D55_09585 PF02657 Fe-S metabolism associated domain N8D55_09590 PF09190 DALR domain N8D55_09590 PF01406 tRNA synthetases class I (C) catalytic domain N8D55_09600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N8D55_09600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N8D55_09605 PF00764 Arginosuccinate synthase N8D55_09610 PF07687 Peptidase dimerisation domain N8D55_09610 PF01546 Peptidase family M20/M25/M40 N8D55_09615 PF00696 Amino acid kinase family N8D55_09615 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase N8D55_09625 PF01118 Semialdehyde dehydrogenase, NAD binding domain N8D55_09630 PF00206 Lyase N8D55_09650 PF00171 Aldehyde dehydrogenase family N8D55_09655 PF02129 X-Pro dipeptidyl-peptidase (S15 family) N8D55_09655 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain N8D55_09675 PF02322 Cytochrome bd terminal oxidase subunit II N8D55_09680 PF01654 Cytochrome bd terminal oxidase subunit I N8D55_09685 PF00005 ABC transporter N8D55_09685 PF00664 ABC transporter transmembrane region N8D55_09690 PF00005 ABC transporter N8D55_09690 PF00664 ABC transporter transmembrane region N8D55_09715 PF03918 Cytochrome C biogenesis protein N8D55_09725 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal N8D55_09725 PF01578 Cytochrome C assembly protein N8D55_09730 PF03100 CcmE N8D55_09740 PF01578 Cytochrome C assembly protein N8D55_09745 PF03379 CcmB protein N8D55_09750 PF00005 ABC transporter N8D55_09755 PF00155 Aminotransferase class I and II N8D55_09760 PF00795 Carbon-nitrogen hydrolase N8D55_09785 PF02616 Segregation and condensation protein ScpA N8D55_09790 PF03795 YCII-related domain N8D55_09800 PF00356 Bacterial regulatory proteins, lacI family N8D55_09815 PF01547 Bacterial extracellular solute-binding protein N8D55_09820 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_09825 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_09850 PF00795 Carbon-nitrogen hydrolase N8D55_09855 PF04371 Porphyromonas-type peptidyl-arginine deiminase N8D55_09865 PF00444 Ribosomal protein L36 N8D55_09870 PF02224 Cytidylate kinase N8D55_09875 PF00575 S1 RNA binding domain N8D55_09880 PF00216 Bacterial DNA-binding protein N8D55_09890 PF18073 Rubredoxin metal binding domain N8D55_09905 PF00483 Nucleotidyl transferase N8D55_09910 PF00999 Sodium/hydrogen exchanger family N8D55_09910 PF02254 TrkA-N domain N8D55_09920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain N8D55_09920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain N8D55_09925 PF00478 IMP dehydrogenase / GMP reductase domain N8D55_09925 PF00571 CBS domain N8D55_09930 PF02540 NAD synthase N8D55_09930 PF00958 GMP synthase C terminal domain N8D55_09930 PF00117 Glutamine amidotransferase class-I N8D55_09995 PF13276 HTH-like domain N8D55_09995 PF00665 Integrase core domain N8D55_09995 PF13333 Integrase core domain N8D55_10030 PF13683 Integrase core domain N8D55_10030 PF13276 HTH-like domain N8D55_10085 PF00672 HAMP domain N8D55_10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_10085 PF02203 Tar ligand binding domain homologue N8D55_10090 PF01494 FAD binding domain N8D55_10105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_10105 PF00672 HAMP domain N8D55_10105 PF00072 Response regulator receiver domain N8D55_10105 PF00512 His Kinase A (phospho-acceptor) domain N8D55_10105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N8D55_10105 PF01627 Hpt domain N8D55_10110 PF06745 KaiC N8D55_10125 PF03918 Cytochrome C biogenesis protein N8D55_10130 PF08534 Redoxin N8D55_10140 PF03100 CcmE N8D55_10145 PF04995 Heme exporter protein D (CcmD) N8D55_10150 PF01578 Cytochrome C assembly protein N8D55_10175 PF00034 Cytochrome c N8D55_10190 PF05523 WxcM-like, C-terminal N8D55_10215 PF01943 Polysaccharide biosynthesis protein N8D55_10235 PF08241 Methyltransferase domain N8D55_10250 PF13439 Glycosyltransferase Family 4 N8D55_10250 PF00534 Glycosyl transferases group 1 N8D55_10255 PF00534 Glycosyl transferases group 1 N8D55_10255 PF13579 Glycosyl transferase 4-like domain N8D55_10270 PF00005 ABC transporter N8D55_10275 PF00005 ABC transporter N8D55_10275 PF00664 ABC transporter transmembrane region N8D55_10285 PF00296 Luciferase-like monooxygenase N8D55_10300 PF03471 Transporter associated domain N8D55_10300 PF01595 Cyclin M transmembrane N-terminal domain N8D55_10300 PF00571 CBS domain N8D55_10310 PF01384 Phosphate transporter family N8D55_10325 PF00204 DNA gyrase B N8D55_10325 PF00986 DNA gyrase B subunit, carboxyl terminus N8D55_10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_10325 PF01751 Toprim domain N8D55_10335 PF06418 CTP synthase N-terminus N8D55_10335 PF00117 Glutamine amidotransferase class-I N8D55_10340 PF00793 DAHP synthetase I family N8D55_10350 PF03952 Enolase, N-terminal domain N8D55_10350 PF00113 Enolase, C-terminal TIM barrel domain N8D55_10355 PF04977 Septum formation initiator N8D55_10360 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase N8D55_10365 PF02542 YgbB family N8D55_10375 PF01713 Smr domain N8D55_10380 PF01975 Survival protein SurE N8D55_10390 PF09335 SNARE associated Golgi protein N8D55_10395 PF01476 LysM domain N8D55_10395 PF01551 Peptidase family M23 N8D55_10405 PF01985 CRS1 / YhbY (CRM) domain N8D55_10410 PF01728 FtsJ-like methyltransferase N8D55_10415 PF01434 Peptidase family M41 N8D55_10415 PF00004 ATPase family associated with various cellular activities (AAA) N8D55_10415 PF06480 FtsH Extracellular N8D55_10415 PF17862 AAA+ lid domain N8D55_10420 PF00809 Pterin binding enzyme N8D55_10430 PF17209 Hfq protein N8D55_10435 PF01926 50S ribosome-binding GTPase N8D55_10435 PF16360 GTP-binding GTPase Middle Region N8D55_10435 PF13167 GTP-binding GTPase N-terminal N8D55_10440 PF02464 Competence-damaged protein N8D55_10455 PF03109 ABC1 family N8D55_10460 PF01726 LexA DNA binding domain N8D55_10460 PF00717 Peptidase S24-like N8D55_10465 PF00154 recA bacterial DNA recombination protein N8D55_10470 PF02631 RecX family N8D55_10475 PF02272 DHHA1 domain N8D55_10475 PF01411 tRNA synthetases class II (A) N8D55_10475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N8D55_10480 PF02599 Global regulator protein family N8D55_10490 PF13426 PAS domain N8D55_10490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_10490 PF08447 PAS fold N8D55_10495 PF02678 Pirin N8D55_10495 PF17954 Quercetinase C-terminal cupin domain N8D55_10500 PF03466 LysR substrate binding domain N8D55_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_10535 PF13638 PIN domain N8D55_10535 PF02562 PhoH-like protein N8D55_10555 PF00701 Dihydrodipicolinate synthetase family N8D55_10565 PF00037 4Fe-4S binding domain N8D55_10565 PF11953 Domain of unknown function (DUF3470) N8D55_10575 PF08450 SMP-30/Gluconolactonase/LRE-like region N8D55_10580 PF13378 Enolase C-terminal domain-like N8D55_10580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N8D55_10585 PF01081 KDPG and KHG aldolase N8D55_10605 PF00942 Cellulose binding domain N8D55_10605 PF03442 Carbohydrate binding domain X2 N8D55_10620 PF01055 Glycosyl hydrolases family 31 N8D55_10620 PF16338 Domain of unknown function (DUF4968) N8D55_10620 PF17137 Domain of unknown function (DUF5110) N8D55_10630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N8D55_10630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N8D55_10640 PF00083 Sugar (and other) transporter N8D55_10660 PF01520 N-acetylmuramoyl-L-alanine amidase N8D55_10665 PF02649 Type I GTP cyclohydrolase folE2 N8D55_10680 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N8D55_10685 PF02548 Ketopantoate hydroxymethyltransferase N8D55_10690 PF02569 Pantoate-beta-alanine ligase N8D55_10695 PF02261 Aspartate decarboxylase N8D55_10700 PF00342 Phosphoglucose isomerase N8D55_10720 PF14310 Fibronectin type III-like domain N8D55_10720 PF00933 Glycosyl hydrolase family 3 N terminal domain N8D55_10720 PF01915 Glycosyl hydrolase family 3 C-terminal domain N8D55_10725 PF00474 Sodium:solute symporter family N8D55_10730 PF01590 GAF domain N8D55_10730 PF00563 EAL domain N8D55_10730 PF00990 Diguanylate cyclase, GGDEF domain N8D55_10730 PF00360 Phytochrome region N8D55_10740 PF00072 Response regulator receiver domain N8D55_10755 PF01569 PAP2 superfamily N8D55_10765 PF07690 Major Facilitator Superfamily N8D55_10780 PF01565 FAD binding domain N8D55_10780 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N8D55_10785 PF01180 Dihydroorotate dehydrogenase N8D55_10800 PF00171 Aldehyde dehydrogenase family N8D55_10815 PF03527 RHS protein N8D55_10815 PF05593 RHS Repeat N8D55_10820 PF03527 RHS protein N8D55_10820 PF05593 RHS Repeat N8D55_10820 PF15606 Bacterial toxin 34 N8D55_10850 PF03073 TspO/MBR family N8D55_10855 PF03447 Homoserine dehydrogenase, NAD binding domain N8D55_10855 PF00742 Homoserine dehydrogenase N8D55_10855 PF13840 ACT domain N8D55_10855 PF01842 ACT domain N8D55_10855 PF00696 Amino acid kinase family N8D55_10860 PF08544 GHMP kinases C terminal N8D55_10860 PF00288 GHMP kinases N terminal domain N8D55_10870 PF14821 Threonine synthase N terminus N8D55_10870 PF00291 Pyridoxal-phosphate dependent enzyme N8D55_10885 PF00027 Cyclic nucleotide-binding domain N8D55_10885 PF13545 Crp-like helix-turn-helix domain N8D55_10900 PF01634 ATP phosphoribosyltransferase N8D55_10900 PF08029 HisG, C-terminal domain N8D55_10905 PF00815 Histidinol dehydrogenase N8D55_10910 PF00155 Aminotransferase class I and II N8D55_10920 PF00117 Glutamine amidotransferase class-I N8D55_10925 PF00977 Histidine biosynthesis protein N8D55_10930 PF00977 Histidine biosynthesis protein N8D55_10955 PF03079 ARD/ARD' family N8D55_10960 PF00596 Class II Aldolase and Adducin N-terminal domain N8D55_10965 PF13520 Amino acid permease N8D55_10980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N8D55_10980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N8D55_10985 PF02913 FAD linked oxidases, C-terminal domain N8D55_10985 PF01565 FAD binding domain N8D55_11005 PF01132 Elongation factor P (EF-P) OB domain N8D55_11005 PF08207 Elongation factor P (EF-P) KOW-like domain N8D55_11005 PF09285 Elongation factor P, C-terminal N8D55_11010 PF00106 short chain dehydrogenase N8D55_11015 PF00682 HMGL-like N8D55_11020 PF00378 Enoyl-CoA hydratase/isomerase N8D55_11040 PF00155 Aminotransferase class I and II N8D55_11045 PF05173 Dihydrodipicolinate reductase, C-terminus N8D55_11045 PF01113 Dihydrodipicolinate reductase, N-terminus N8D55_11065 PF03449 Transcription elongation factor, N-terminal N8D55_11065 PF01272 Transcription elongation factor, GreA/GreB, C-term N8D55_11090 PF04397 LytTr DNA-binding domain N8D55_11090 PF00072 Response regulator receiver domain N8D55_11100 PF00152 tRNA synthetases class II (D, K and N) N8D55_11100 PF01336 OB-fold nucleic acid binding domain N8D55_11105 PF00072 Response regulator receiver domain N8D55_11110 PF00512 His Kinase A (phospho-acceptor) domain N8D55_11110 PF01627 Hpt domain N8D55_11110 PF00072 Response regulator receiver domain N8D55_11110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_11115 PF01627 Hpt domain N8D55_11115 PF00512 His Kinase A (phospho-acceptor) domain N8D55_11115 PF00072 Response regulator receiver domain N8D55_11115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_11120 PF00378 Enoyl-CoA hydratase/isomerase N8D55_11135 PF00330 Aconitase family (aconitate hydratase) N8D55_11135 PF00694 Aconitase C-terminal domain N8D55_11150 PF00330 Aconitase family (aconitate hydratase) N8D55_11150 PF06434 Aconitate hydratase 2 N-terminus N8D55_11150 PF11791 Aconitate B N-terminal domain N8D55_11165 PF00563 EAL domain N8D55_11165 PF00990 Diguanylate cyclase, GGDEF domain N8D55_11165 PF03707 Bacterial signalling protein N terminal repeat N8D55_11170 PF01339 CheB methylesterase N8D55_11170 PF00072 Response regulator receiver domain N8D55_11175 PF03975 CheD chemotactic sensory transduction N8D55_11180 PF01739 CheR methyltransferase, SAM binding domain N8D55_11180 PF03705 CheR methyltransferase, all-alpha domain N8D55_11185 PF02203 Tar ligand binding domain homologue N8D55_11185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11185 PF00672 HAMP domain N8D55_11195 PF01584 CheW-like domain N8D55_11200 PF07317 Flagellar regulator YcgR N8D55_11200 PF07238 PilZ domain N8D55_11205 PF02203 Tar ligand binding domain homologue N8D55_11205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11205 PF00672 HAMP domain N8D55_11220 PF02203 Tar ligand binding domain homologue N8D55_11220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11220 PF00672 HAMP domain N8D55_11225 PF00672 HAMP domain N8D55_11225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11225 PF02203 Tar ligand binding domain homologue N8D55_11240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11240 PF00672 HAMP domain N8D55_11240 PF17200 Single Cache domain 2 N8D55_11240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11240 PF17200 Single Cache domain 2 N8D55_11240 PF00672 HAMP domain N8D55_11250 PF02203 Tar ligand binding domain homologue N8D55_11250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11250 PF00672 HAMP domain N8D55_11260 PF01584 CheW-like domain N8D55_11260 PF02895 Signal transducing histidine kinase, homodimeric domain N8D55_11260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_11260 PF09078 CheY binding N8D55_11260 PF01627 Hpt domain N8D55_11265 PF00072 Response regulator receiver domain N8D55_11275 PF01584 CheW-like domain N8D55_11280 PF13614 AAA domain N8D55_11285 PF13677 Membrane MotB of proton-channel complex MotA/MotB N8D55_11285 PF00691 OmpA family N8D55_11290 PF01618 MotA/TolQ/ExbB proton channel family N8D55_11300 PF01381 Helix-turn-helix N8D55_11315 PF07715 TonB-dependent Receptor Plug Domain N8D55_11315 PF00593 TonB dependent receptor N8D55_11330 PF00005 ABC transporter N8D55_11340 PF00425 chorismate binding enzyme N8D55_11350 PF00975 Thioesterase domain N8D55_11355 PF00975 Thioesterase domain N8D55_11370 PF08242 Methyltransferase domain N8D55_11370 PF00550 Phosphopantetheine attachment site N8D55_11370 PF00501 AMP-binding enzyme N8D55_11370 PF00668 Condensation domain N8D55_11380 PF00668 Condensation domain N8D55_11380 PF08242 Methyltransferase domain N8D55_11380 PF00550 Phosphopantetheine attachment site N8D55_11380 PF00501 AMP-binding enzyme N8D55_11390 PF00550 Phosphopantetheine attachment site N8D55_11390 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_11390 PF16197 Ketoacyl-synthetase C-terminal extension N8D55_11390 PF00668 Condensation domain N8D55_11390 PF00698 Acyl transferase domain N8D55_11390 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_11395 PF00698 Acyl transferase domain N8D55_11395 PF00550 Phosphopantetheine attachment site N8D55_11395 PF00668 Condensation domain N8D55_11395 PF16197 Ketoacyl-synthetase C-terminal extension N8D55_11395 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_11395 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_11405 PF00550 Phosphopantetheine attachment site N8D55_11405 PF08242 Methyltransferase domain N8D55_11405 PF00668 Condensation domain N8D55_11405 PF00501 AMP-binding enzyme N8D55_11410 PF00550 Phosphopantetheine attachment site N8D55_11410 PF08242 Methyltransferase domain N8D55_11410 PF00668 Condensation domain N8D55_11410 PF00501 AMP-binding enzyme N8D55_11430 PF00593 TonB dependent receptor N8D55_11430 PF07715 TonB-dependent Receptor Plug Domain N8D55_11445 PF00005 ABC transporter N8D55_11445 PF00664 ABC transporter transmembrane region N8D55_11450 PF00005 ABC transporter N8D55_11460 PF04344 Chemotaxis phosphatase, CheZ N8D55_11465 PF00072 Response regulator receiver domain N8D55_11470 PF04542 Sigma-70 region 2 N8D55_11470 PF04539 Sigma-70 region 3 N8D55_11470 PF04545 Sigma-70, region 4 N8D55_11475 PF10609 NUBPL iron-transfer P-loop NTPase N8D55_11480 PF00448 SRP54-type protein, GTPase domain N8D55_11485 PF00771 FHIPEP family N8D55_11490 PF01312 FlhB HrpN YscU SpaS Family N8D55_11500 PF00990 Diguanylate cyclase, GGDEF domain N8D55_11505 PF13188 PAS domain N8D55_11505 PF03707 Bacterial signalling protein N terminal repeat N8D55_11505 PF00990 Diguanylate cyclase, GGDEF domain N8D55_11505 PF00563 EAL domain N8D55_11515 PF01313 Bacterial export proteins, family 3 N8D55_11520 PF00813 FliP family N8D55_11525 PF04347 Flagellar biosynthesis protein, FliO N8D55_11530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N8D55_11535 PF02154 Flagellar motor switch protein FliM N8D55_11535 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N8D55_11555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N8D55_11555 PF18269 T3SS EscN ATPase C-terminal domain N8D55_11565 PF14842 FliG N-terminal domain N8D55_11565 PF14841 FliG middle domain N8D55_11565 PF01706 FliG C-terminal domain N8D55_11570 PF08345 Flagellar M-ring protein C-terminal N8D55_11570 PF01514 Secretory protein of YscJ/FliF family N8D55_11575 PF02049 Flagellar hook-basal body complex protein FliE N8D55_11580 PF00534 Glycosyl transferases group 1 N8D55_11580 PF00535 Glycosyl transferase family 2 N8D55_11595 PF01609 Transposase DDE domain N8D55_11595 PF05598 Transposase domain (DUF772) N8D55_11630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N8D55_11630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N8D55_11640 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N8D55_11650 PF00072 Response regulator receiver domain N8D55_11650 PF01339 CheB methylesterase N8D55_11655 PF04552 Sigma-54, DNA binding domain N8D55_11655 PF00309 Sigma-54 factor, Activator interacting domain (AID) N8D55_11655 PF04963 Sigma-54 factor, core binding domain N8D55_11660 PF00072 Response regulator receiver domain N8D55_11660 PF00196 Bacterial regulatory proteins, luxR family N8D55_11675 PF02561 Flagellar protein FliS N8D55_11680 PF07196 Flagellin hook IN motif N8D55_11680 PF07195 Flagellar hook-associated protein 2 C-terminus N8D55_11680 PF02465 Flagellar hook-associated protein 2 N-terminus N8D55_11685 PF00700 Bacterial flagellin C-terminal helical region N8D55_11685 PF00669 Bacterial flagellin N-terminal helical region N8D55_11695 PF07196 Flagellin hook IN motif N8D55_11695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N8D55_11700 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase N8D55_11700 PF10135 Rod binding protein N8D55_11705 PF02119 Flagellar P-ring protein N8D55_11710 PF02107 Flagellar L-ring protein N8D55_11715 PF00460 Flagella basal body rod protein N8D55_11715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N8D55_11720 PF00460 Flagella basal body rod protein N8D55_11720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N8D55_11725 PF07559 Flagellar basal body protein FlaE N8D55_11725 PF00460 Flagella basal body rod protein N8D55_11725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N8D55_11730 PF03963 Flagellar hook capping protein - N-terminal region N8D55_11735 PF00460 Flagella basal body rod protein N8D55_11735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N8D55_11765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_11765 PF00512 His Kinase A (phospho-acceptor) domain N8D55_11770 PF00563 EAL domain N8D55_11770 PF00990 Diguanylate cyclase, GGDEF domain N8D55_11770 PF03707 Bacterial signalling protein N terminal repeat N8D55_11780 PF03707 Bacterial signalling protein N terminal repeat N8D55_11780 PF00990 Diguanylate cyclase, GGDEF domain N8D55_11780 PF00563 EAL domain N8D55_11795 PF00672 HAMP domain N8D55_11795 PF12729 Four helix bundle sensory module for signal transduction N8D55_11795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_11800 PF04356 Protein of unknown function (DUF489) N8D55_11810 PF00293 NUDIX domain N8D55_11815 PF02617 ATP-dependent Clp protease adaptor protein ClpS N8D55_11820 PF10431 C-terminal, D2-small domain, of ClpB protein N8D55_11820 PF02861 Clp amino terminal domain, pathogenicity island component N8D55_11820 PF07724 AAA domain (Cdc48 subfamily) N8D55_11820 PF00004 ATPase family associated with various cellular activities (AAA) N8D55_11820 PF17871 AAA lid domain N8D55_11825 PF01176 Translation initiation factor 1A / IF-1 N8D55_11830 PF03588 Leucyl/phenylalanyl-tRNA protein transferase N8D55_11845 PF09397 Ftsk gamma domain N8D55_11845 PF13491 4TM region of DNA translocase FtsK/SpoIIIE N8D55_11845 PF17854 FtsK alpha domain N8D55_11845 PF01580 FtsK/SpoIIIE family N8D55_11855 PF03548 Outer membrane lipoprotein carrier protein LolA N8D55_11860 PF00004 ATPase family associated with various cellular activities (AAA) N8D55_11860 PF16193 AAA C-terminal domain N8D55_11860 PF12002 MgsA AAA+ ATPase C terminal N8D55_11870 PF00108 Thiolase, N-terminal domain N8D55_11870 PF02803 Thiolase, C-terminal domain N8D55_11875 PF00378 Enoyl-CoA hydratase/isomerase N8D55_11875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N8D55_11875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N8D55_11885 PF00334 Nucleoside diphosphate kinase N8D55_11890 PF04055 Radical SAM superfamily N8D55_11900 PF13464 Domain of unknown function (DUF4115) N8D55_11910 PF01011 PQQ enzyme repeat N8D55_11910 PF13360 PQQ-like domain N8D55_11915 PF01926 50S ribosome-binding GTPase N8D55_11915 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N8D55_11935 PF03372 Endonuclease/Exonuclease/phosphatase family N8D55_11950 PF12804 MobA-like NTP transferase domain N8D55_11960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N8D55_11960 PF14824 Sirohaem biosynthesis protein central N8D55_11960 PF10414 Sirohaem synthase dimerisation region N8D55_11965 PF03861 ANTAR domain N8D55_11965 PF00072 Response regulator receiver domain N8D55_11985 PF00355 Rieske [2Fe-2S] domain N8D55_11985 PF11723 Homotrimeric ring hydroxylase N8D55_11990 PF04324 BFD-like [2Fe-2S] binding domain N8D55_11990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N8D55_11990 PF00384 Molybdopterin oxidoreductase N8D55_11990 PF01568 Molydopterin dinucleotide binding domain N8D55_12010 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N8D55_12035 PF01266 FAD dependent oxidoreductase N8D55_12060 PF05974 Domain of unknown function (DUF892) N8D55_12075 PF00990 Diguanylate cyclase, GGDEF domain N8D55_12075 PF08447 PAS fold N8D55_12075 PF08448 PAS fold N8D55_12075 PF00563 EAL domain N8D55_12085 PF12951 Passenger-associated-transport-repeat N8D55_12100 PF00672 HAMP domain N8D55_12100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_12100 PF00512 His Kinase A (phospho-acceptor) domain N8D55_12110 PF00072 Response regulator receiver domain N8D55_12110 PF00486 Transcriptional regulatory protein, C terminal N8D55_12120 PF06629 MltA-interacting protein MipA N8D55_12155 PF00072 Response regulator receiver domain N8D55_12155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_12155 PF13426 PAS domain N8D55_12160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_12160 PF00512 His Kinase A (phospho-acceptor) domain N8D55_12160 PF00672 HAMP domain N8D55_12190 PF00512 His Kinase A (phospho-acceptor) domain N8D55_12190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_12195 PF00072 Response regulator receiver domain N8D55_12195 PF00196 Bacterial regulatory proteins, luxR family N8D55_12200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N8D55_12225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_12225 PF00672 HAMP domain N8D55_12225 PF02203 Tar ligand binding domain homologue N8D55_12235 PF03466 LysR substrate binding domain N8D55_12235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_12270 PF00005 ABC transporter N8D55_12270 PF12848 ABC transporter N8D55_12285 PF00376 MerR family regulatory protein N8D55_12285 PF09278 MerR, DNA binding N8D55_12295 PF13700 Domain of unknown function (DUF4158) N8D55_12295 PF01526 Tn3 transposase DDE domain N8D55_12300 PF11740 Plasmid replication region DNA-binding N-term N8D55_12365 PF02810 SEC-C motif N8D55_12365 PF07517 SecA DEAD-like domain N8D55_12365 PF01043 SecA preprotein cross-linking domain N8D55_12365 PF07516 SecA Wing and Scaffold domain N8D55_12370 PF02810 SEC-C motif N8D55_12370 PF07517 SecA DEAD-like domain N8D55_12370 PF01043 SecA preprotein cross-linking domain N8D55_12370 PF07516 SecA Wing and Scaffold domain N8D55_12380 PF01106 NifU-like domain N8D55_12385 PF01329 Pterin 4 alpha carbinolamine dehydratase N8D55_12425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N8D55_12445 PF17837 4'-phosphopantetheinyl transferase N-terminal domain N8D55_12445 PF01648 4'-phosphopantetheinyl transferase superfamily N8D55_12465 PF00550 Phosphopantetheine attachment site N8D55_12465 PF00668 Condensation domain N8D55_12465 PF00501 AMP-binding enzyme N8D55_12465 PF13193 AMP-binding enzyme C-terminal domain N8D55_12470 PF00501 AMP-binding enzyme N8D55_12470 PF13193 AMP-binding enzyme C-terminal domain N8D55_12470 PF00668 Condensation domain N8D55_12470 PF00550 Phosphopantetheine attachment site N8D55_12470 PF00975 Thioesterase domain N8D55_12475 PF00501 AMP-binding enzyme N8D55_12475 PF13193 AMP-binding enzyme C-terminal domain N8D55_12475 PF00668 Condensation domain N8D55_12475 PF00550 Phosphopantetheine attachment site N8D55_12480 PF00501 AMP-binding enzyme N8D55_12480 PF13193 AMP-binding enzyme C-terminal domain N8D55_12480 PF00668 Condensation domain N8D55_12480 PF00550 Phosphopantetheine attachment site N8D55_12495 PF00155 Aminotransferase class I and II N8D55_12505 PF01070 FMN-dependent dehydrogenase N8D55_12510 PF00583 Acetyltransferase (GNAT) family N8D55_12525 PF01066 CDP-alcohol phosphatidyltransferase N8D55_12530 PF08459 UvrC Helix-hairpin-helix N-terminal N8D55_12530 PF02151 UvrB/uvrC motif N8D55_12530 PF01541 GIY-YIG catalytic domain N8D55_12540 PF01451 Low molecular weight phosphotyrosine protein phosphatase N8D55_12545 PF02348 Cytidylyltransferase N8D55_12555 PF00005 ABC transporter N8D55_12555 PF00664 ABC transporter transmembrane region N8D55_12565 PF01618 MotA/TolQ/ExbB proton channel family N8D55_12580 PF00005 ABC transporter N8D55_12585 PF12704 MacB-like periplasmic core domain N8D55_12585 PF02687 FtsX-like permease family N8D55_12595 PF03937 Flavinator of succinate dehydrogenase N8D55_12600 PF13085 2Fe-2S iron-sulfur cluster binding domain N8D55_12610 PF00890 FAD binding domain N8D55_12610 PF02910 Fumarate reductase flavoprotein C-term N8D55_12615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N8D55_12620 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N8D55_12635 PF00005 ABC transporter N8D55_12635 PF17912 MalK OB fold domain N8D55_12640 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain N8D55_12640 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain N8D55_12645 PF02685 Glucokinase N8D55_12650 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N8D55_12655 PF00920 Dehydratase family N8D55_12660 PF01081 KDPG and KHG aldolase N8D55_12670 PF00873 AcrB/AcrD/AcrF family N8D55_12685 PF00034 Cytochrome c N8D55_12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_12725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N8D55_12725 PF00072 Response regulator receiver domain N8D55_12725 PF01627 Hpt domain N8D55_12725 PF00512 His Kinase A (phospho-acceptor) domain N8D55_12725 PF00672 HAMP domain N8D55_12730 PF00575 S1 RNA binding domain N8D55_12730 PF16921 Tex protein YqgF-like domain N8D55_12730 PF17674 HHH domain N8D55_12730 PF09371 Tex-like protein N-terminal domain N8D55_12755 PF00561 alpha/beta hydrolase fold N8D55_12765 PF01066 CDP-alcohol phosphatidyltransferase N8D55_12785 PF03618 Kinase/pyrophosphorylase N8D55_12790 PF02896 PEP-utilising enzyme, TIM barrel domain N8D55_12790 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain N8D55_12790 PF00391 PEP-utilising enzyme, mobile domain N8D55_12800 PF00929 Exonuclease N8D55_12805 PF14437 MafB19-like deaminase N8D55_12810 PF01325 Iron dependent repressor, N-terminal DNA binding domain N8D55_12810 PF02742 Iron dependent repressor, metal binding and dimerisation domain N8D55_12820 PF00561 alpha/beta hydrolase fold N8D55_12865 PF00857 Isochorismatase family N8D55_12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_12875 PF07730 Histidine kinase N8D55_12895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_12895 PF03466 LysR substrate binding domain N8D55_12900 PF03358 NADPH-dependent FMN reductase N8D55_12925 PF03466 LysR substrate binding domain N8D55_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_12930 PF02403 Seryl-tRNA synthetase N-terminal domain N8D55_12930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N8D55_12935 PF03544 Gram-negative bacterial TonB protein C-terminal N8D55_12945 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N8D55_12950 PF01842 ACT domain N8D55_12950 PF01817 Chorismate mutase type II N8D55_12950 PF00800 Prephenate dehydratase N8D55_12955 PF00266 Aminotransferase class-V N8D55_12960 PF00174 Oxidoreductase molybdopterin binding domain N8D55_13000 PF07969 Amidohydrolase family N8D55_13020 PF13333 Integrase core domain N8D55_13020 PF13276 HTH-like domain N8D55_13020 PF00665 Integrase core domain N8D55_13035 PF13360 PQQ-like domain N8D55_13040 PF03989 DNA gyrase C-terminal domain, beta-propeller N8D55_13040 PF00521 DNA gyrase/topoisomerase IV, subunit A N8D55_13045 PF01008 Initiation factor 2 subunit family N8D55_13065 PF00155 Aminotransferase class I and II N8D55_13075 PF02463 RecF/RecN/SMC N terminal domain N8D55_13080 PF03948 Ribosomal protein L9, C-terminal domain N8D55_13080 PF01281 Ribosomal protein L9, N-terminal domain N8D55_13085 PF01084 Ribosomal protein S18 N8D55_13090 PF01250 Ribosomal protein S6 N8D55_13095 PF01521 Iron-sulphur cluster biosynthesis N8D55_13100 PF01336 OB-fold nucleic acid binding domain N8D55_13100 PF00152 tRNA synthetases class II (D, K and N) N8D55_13115 PF04299 Putative FMN-binding domain N8D55_13120 PF00484 Carbonic anhydrase N8D55_13125 PF06052 3-hydroxyanthranilic acid dioxygenase N8D55_13135 PF00266 Aminotransferase class-V N8D55_13140 PF01494 FAD binding domain N8D55_13145 PF00929 Exonuclease N8D55_13145 PF08411 Exonuclease C-terminal N8D55_13180 PF10672 S-adenosylmethionine-dependent methyltransferase N8D55_13180 PF02926 THUMP domain N8D55_13180 PF01170 Putative RNA methylase family UPF0020 N8D55_13225 PF00581 Rhodanese-like domain N8D55_13230 PF00293 NUDIX domain N8D55_13235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N8D55_13235 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N8D55_13240 PF00378 Enoyl-CoA hydratase/isomerase N8D55_13250 PF10576 Iron-sulfur binding domain of endonuclease III N8D55_13250 PF00633 Helix-hairpin-helix motif N8D55_13250 PF00730 HhH-GPD superfamily base excision DNA repair protein N8D55_13255 PF01740 STAS domain N8D55_13255 PF00916 Sulfate permease family N8D55_13275 PF12849 PBP superfamily domain N8D55_13280 PF12849 PBP superfamily domain N8D55_13285 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_13290 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_13295 PF00005 ABC transporter N8D55_13300 PF01895 PhoU domain N8D55_13315 PF00990 Diguanylate cyclase, GGDEF domain N8D55_13320 PF00588 SpoU rRNA Methylase family N8D55_13320 PF08032 RNA 2'-O ribose methyltransferase substrate binding N8D55_13330 PF17876 Cold shock domain N8D55_13330 PF08461 Ribonuclease R winged-helix domain N8D55_13330 PF08206 Ribonuclease B OB domain N8D55_13330 PF00773 RNB domain N8D55_13330 PF00575 S1 RNA binding domain N8D55_13350 PF01209 ubiE/COQ5 methyltransferase family N8D55_13355 PF00809 Pterin binding enzyme N8D55_13355 PF02574 Homocysteine S-methyltransferase N8D55_13370 PF00294 pfkB family carbohydrate kinase N8D55_13400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N8D55_13400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N8D55_13400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N8D55_13405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N8D55_13405 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N8D55_13410 PF00255 Glutathione peroxidase N8D55_13445 PF00206 Lyase N8D55_13445 PF10415 Fumarase C C-terminus N8D55_13450 PF00571 CBS domain N8D55_13450 PF03471 Transporter associated domain N8D55_13450 PF01595 Cyclin M transmembrane N-terminal domain N8D55_13455 PF08328 Adenylosuccinate lyase C-terminal N8D55_13455 PF00206 Lyase N8D55_13475 PF00676 Dehydrogenase E1 component N8D55_13475 PF02779 Transketolase, pyrimidine binding domain N8D55_13475 PF16870 2-oxoglutarate dehydrogenase C-terminal N8D55_13475 PF16078 2-oxoglutarate dehydrogenase N-terminus N8D55_13480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N8D55_13480 PF00364 Biotin-requiring enzyme N8D55_13480 PF02817 e3 binding domain N8D55_13485 PF07992 Pyridine nucleotide-disulphide oxidoreductase N8D55_13485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N8D55_13490 PF03641 Possible lysine decarboxylase N8D55_13495 PF01205 Uncharacterized protein family UPF0029 N8D55_13500 PF02016 LD-carboxypeptidase N-terminal domain N8D55_13500 PF17676 LD-carboxypeptidase C-terminal domain N8D55_13515 PF03466 LysR substrate binding domain N8D55_13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_13520 PF03412 Peptidase C39 family N8D55_13520 PF00005 ABC transporter N8D55_13520 PF00664 ABC transporter transmembrane region N8D55_13545 PF08543 Phosphomethylpyrimidine kinase N8D55_13555 PF00012 Hsp70 protein N8D55_13560 PF01025 GrpE N8D55_13565 PF01628 HrcA protein C terminal domain N8D55_13565 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding N8D55_13570 PF02463 RecF/RecN/SMC N terminal domain N8D55_13575 PF01475 Ferric uptake regulator family N8D55_13580 PF04355 SmpA / OmlA family N8D55_13595 PF01668 SmpB protein N8D55_13615 PF00665 Integrase core domain N8D55_13615 PF13333 Integrase core domain N8D55_13615 PF13276 HTH-like domain N8D55_13710 PF05567 Neisseria PilC beta-propeller domain N8D55_13735 PF00114 Pilin (bacterial filament) N8D55_13735 PF07963 Prokaryotic N-terminal methylation motif N8D55_13740 PF03641 Possible lysine decarboxylase N8D55_13740 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases N8D55_13740 PF11892 Domain of unknown function (DUF3412) N8D55_13745 PF00593 TonB dependent receptor N8D55_13745 PF00593 TonB dependent receptor N8D55_13750 PF01914 MarC family integral membrane protein N8D55_13760 PF00462 Glutaredoxin N8D55_13765 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N8D55_13765 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N8D55_13780 PF00731 AIR carboxylase N8D55_13790 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N8D55_13790 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N8D55_13805 PF00312 Ribosomal protein S15 N8D55_13810 PF16198 tRNA pseudouridylate synthase B C-terminal domain N8D55_13810 PF09157 Pseudouridine synthase II TruB, C-terminal N8D55_13810 PF01509 TruB family pseudouridylate synthase (N terminal domain) N8D55_13815 PF02033 Ribosome-binding factor A N8D55_13820 PF00009 Elongation factor Tu GTP binding domain N8D55_13820 PF11987 Translation-initiation factor 2 N8D55_13820 PF08364 Bacterial translation initiation factor IF-2 associated region N8D55_13820 PF04760 Translation initiation factor IF-2, N-terminal region N8D55_13825 PF13184 NusA-like KH domain N8D55_13825 PF08529 NusA N-terminal domain N8D55_13825 PF00575 S1 RNA binding domain N8D55_13840 PF00361 Proton-conducting membrane transporter N8D55_13845 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus N8D55_13845 PF00361 Proton-conducting membrane transporter N8D55_13850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N8D55_13850 PF00361 Proton-conducting membrane transporter N8D55_13855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L N8D55_13860 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 N8D55_13865 PF12838 4Fe-4S dicluster domain N8D55_13870 PF00146 NADH dehydrogenase N8D55_13875 PF00384 Molybdopterin oxidoreductase N8D55_13875 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N8D55_13875 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal N8D55_13880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit N8D55_13880 PF10531 SLBB domain N8D55_13880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region N8D55_13890 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit N8D55_13895 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit N8D55_13900 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N8D55_13905 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 N8D55_13920 PF00121 Triosephosphate isomerase N8D55_13925 PF00106 short chain dehydrogenase N8D55_13955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N8D55_13955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N8D55_13955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N8D55_13955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N8D55_13965 PF00290 Tryptophan synthase alpha chain N8D55_13975 PF00291 Pyridoxal-phosphate dependent enzyme N8D55_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_13980 PF03466 LysR substrate binding domain N8D55_13985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase N8D55_13990 PF01416 tRNA pseudouridine synthase N8D55_14005 PF01118 Semialdehyde dehydrogenase, NAD binding domain N8D55_14005 PF02774 Semialdehyde dehydrogenase, dimerisation domain N8D55_14010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N8D55_14010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N8D55_14025 PF05175 Methyltransferase small domain N8D55_14035 PF02666 Phosphatidylserine decarboxylase N8D55_14075 PF04055 Radical SAM superfamily N8D55_14075 PF18693 TRAM domain N8D55_14075 PF00919 Uncharacterized protein family UPF0004 N8D55_14080 PF01738 Dienelactone hydrolase family N8D55_14100 PF00692 dUTPase N8D55_14105 PF10609 NUBPL iron-transfer P-loop NTPase N8D55_14125 PF01431 Peptidase family M13 N8D55_14125 PF05649 Peptidase family M13 N8D55_14170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N8D55_14180 PF00877 NlpC/P60 family N8D55_14205 PF00072 Response regulator receiver domain N8D55_14205 PF00158 Sigma-54 interaction domain N8D55_14205 PF02954 Bacterial regulatory protein, Fis family N8D55_14210 PF00512 His Kinase A (phospho-acceptor) domain N8D55_14210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_14220 PF13649 Methyltransferase domain N8D55_14225 PF00375 Sodium:dicarboxylate symporter family N8D55_14230 PF00245 Alkaline phosphatase N8D55_14235 PF11734 TilS substrate C-terminal domain N8D55_14235 PF01171 PP-loop family N8D55_14235 PF09179 TilS substrate binding domain N8D55_14240 PF02609 Exonuclease VII small subunit N8D55_14245 PF00348 Polyprenyl synthetase N8D55_14260 PF01523 Putative modulator of DNA gyrase N8D55_14265 PF04751 Protein of unknown function (DUF615) N8D55_14270 PF01523 Putative modulator of DNA gyrase N8D55_14285 PF00575 S1 RNA binding domain N8D55_14285 PF10150 Ribonuclease E/G family N8D55_14290 PF02545 Maf-like protein N8D55_14305 PF02590 Predicted SPOUT methyltransferase N8D55_14325 PF01467 Cytidylyltransferase-like N8D55_14340 PF08264 Anticodon-binding domain of tRNA N8D55_14340 PF00133 tRNA synthetases class I (I, L, M and V) N8D55_14340 PF13603 Leucyl-tRNA synthetase, Domain 2 N8D55_14350 PF00085 Thioredoxin N8D55_14360 PF04070 Domain of unknown function (DUF378) N8D55_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_14375 PF03466 LysR substrate binding domain N8D55_14400 PF00664 ABC transporter transmembrane region N8D55_14400 PF00005 ABC transporter N8D55_14415 PF00144 Beta-lactamase N8D55_14420 PF03737 Aldolase/RraA N8D55_14435 PF00990 Diguanylate cyclase, GGDEF domain N8D55_14440 PF00849 RNA pseudouridylate synthase N8D55_14440 PF01479 S4 domain N8D55_14450 PF03880 DbpA RNA binding domain N8D55_14450 PF00270 DEAD/DEAH box helicase N8D55_14450 PF00271 Helicase conserved C-terminal domain N8D55_14455 PF04542 Sigma-70 region 2 N8D55_14455 PF08281 Sigma-70, region 4 N8D55_14475 PF01494 FAD binding domain N8D55_14500 PF02805 Metal binding domain of Ada N8D55_14500 PF00730 HhH-GPD superfamily base excision DNA repair protein N8D55_14500 PF12833 Helix-turn-helix domain N8D55_14500 PF06029 AlkA N-terminal domain N8D55_14505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N8D55_14505 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N8D55_14515 PF00654 Voltage gated chloride channel N8D55_14530 PF07715 TonB-dependent Receptor Plug Domain N8D55_14530 PF00593 TonB dependent receptor N8D55_14575 PF00248 Aldo/keto reductase family N8D55_14580 PF07690 Major Facilitator Superfamily N8D55_14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_14585 PF03466 LysR substrate binding domain N8D55_14605 PF03466 LysR substrate binding domain N8D55_14605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_14615 PF00248 Aldo/keto reductase family N8D55_14620 PF00440 Bacterial regulatory proteins, tetR family N8D55_14620 PF16859 Tetracyclin repressor-like, C-terminal domain N8D55_14630 PF00873 AcrB/AcrD/AcrF family N8D55_14645 PF01475 Ferric uptake regulator family N8D55_14650 PF00749 tRNA synthetases class I (E and Q), catalytic domain N8D55_14675 PF06123 Inner membrane protein CreD N8D55_14690 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ N8D55_14755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_14755 PF02203 Tar ligand binding domain homologue N8D55_14755 PF00672 HAMP domain N8D55_14760 PF01584 CheW-like domain N8D55_14765 PF00990 Diguanylate cyclase, GGDEF domain N8D55_14765 PF13426 PAS domain N8D55_14765 PF00563 EAL domain N8D55_14795 PF00300 Histidine phosphatase superfamily (branch 1) N8D55_14800 PF04493 Endonuclease V N8D55_14825 PF02554 Carbon starvation protein CstA N8D55_14825 PF13722 5TM C-terminal transporter carbon starvation CstA N8D55_14830 PF04328 Selenoprotein, putative N8D55_14835 PF13419 Haloacid dehalogenase-like hydrolase N8D55_14860 PF12804 MobA-like NTP transferase domain N8D55_14865 PF13478 XdhC Rossmann domain N8D55_14865 PF02625 XdhC and CoxI family N8D55_14870 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N8D55_14870 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase N8D55_14880 PF00111 2Fe-2S iron-sulfur cluster binding domain N8D55_14880 PF01799 [2Fe-2S] binding domain N8D55_14880 PF10518 TAT (twin-arginine translocation) pathway signal sequence N8D55_14885 PF00990 Diguanylate cyclase, GGDEF domain N8D55_14885 PF00360 Phytochrome region N8D55_14885 PF01590 GAF domain N8D55_14885 PF00563 EAL domain N8D55_14890 PF01979 Amidohydrolase family N8D55_14895 PF04052 TolB amino-terminal domain N8D55_14895 PF07676 WD40-like Beta Propeller Repeat N8D55_14900 PF00593 TonB dependent receptor N8D55_14900 PF07715 TonB-dependent Receptor Plug Domain N8D55_14905 PF00436 Single-strand binding protein family N8D55_14910 PF00348 Polyprenyl synthetase N8D55_14915 PF08245 Mur ligase middle domain N8D55_14930 PF00696 Amino acid kinase family N8D55_14930 PF01842 ACT domain N8D55_14955 PF02566 OsmC-like protein N8D55_14965 PF03652 Holliday junction resolvase N8D55_14970 PF02622 Uncharacterized ACR, COG1678 N8D55_14985 PF00437 Type II/IV secretion system protein N8D55_14995 PF01168 Alanine racemase, N-terminal domain N8D55_15000 PF14748 Pyrroline-5-carboxylate reductase dimerisation N8D55_15000 PF03807 NADP oxidoreductase coenzyme F420-dependent N8D55_15010 PF01476 LysM domain N8D55_15010 PF01551 Peptidase family M23 N8D55_15045 PF00005 ABC transporter N8D55_15050 PF01458 Uncharacterized protein family (UPF0051) N8D55_15055 PF00266 Aminotransferase class-V N8D55_15065 PF00355 Rieske [2Fe-2S] domain N8D55_15070 PF07715 TonB-dependent Receptor Plug Domain N8D55_15070 PF00593 TonB dependent receptor N8D55_15100 PF02424 ApbE family N8D55_15105 PF00667 FAD binding domain N8D55_15105 PF00258 Flavodoxin N8D55_15105 PF00175 Oxidoreductase NAD-binding domain N8D55_15120 PF07687 Peptidase dimerisation domain N8D55_15120 PF01546 Peptidase family M20/M25/M40 N8D55_15130 PF01636 Phosphotransferase enzyme family N8D55_15135 PF00483 Nucleotidyl transferase N8D55_15140 PF13340 Putative transposase of IS4/5 family (DUF4096) N8D55_15145 PF02253 Phospholipase A1 N8D55_15155 PF00484 Carbonic anhydrase N8D55_15165 PF05681 Fumarate hydratase (Fumerase) N8D55_15165 PF05683 Fumarase C-terminus N8D55_15170 PF00005 ABC transporter N8D55_15175 PF00970 Oxidoreductase FAD-binding domain N8D55_15175 PF00175 Oxidoreductase NAD-binding domain N8D55_15180 PF00255 Glutathione peroxidase N8D55_15190 PF12802 MarR family N8D55_15215 PF00854 POT family N8D55_15225 PF14310 Fibronectin type III-like domain N8D55_15225 PF00933 Glycosyl hydrolase family 3 N terminal domain N8D55_15225 PF01915 Glycosyl hydrolase family 3 C-terminal domain N8D55_15240 PF07690 Major Facilitator Superfamily N8D55_15245 PF00529 HlyD membrane-fusion protein of T1SS N8D55_15245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_15250 PF02321 Outer membrane efflux protein N8D55_15275 PF05724 Thiopurine S-methyltransferase (TPMT) N8D55_15280 PF00210 Ferritin-like domain N8D55_15290 PF00593 TonB dependent receptor N8D55_15290 PF07715 TonB-dependent Receptor Plug Domain N8D55_15300 PF00733 Asparagine synthase N8D55_15300 PF13537 Glutamine amidotransferase domain N8D55_15325 PF00132 Bacterial transferase hexapeptide (six repeats) N8D55_15325 PF14602 Hexapeptide repeat of succinyl-transferase N8D55_15325 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal N8D55_15370 PF00318 Ribosomal protein S2 N8D55_15375 PF00889 Elongation factor TS N8D55_15380 PF00072 Response regulator receiver domain N8D55_15380 PF00990 Diguanylate cyclase, GGDEF domain N8D55_15385 PF00696 Amino acid kinase family N8D55_15390 PF01765 Ribosome recycling factor N8D55_15395 PF01255 Putative undecaprenyl diphosphate synthase N8D55_15405 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain N8D55_15405 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase N8D55_15405 PF13288 DXP reductoisomerase C-terminal domain N8D55_15410 PF17820 PDZ domain N8D55_15410 PF02163 Peptidase family M50 N8D55_15430 PF07977 FabA-like domain N8D55_15440 PF02684 Lipid-A-disaccharide synthetase N8D55_15445 PF01351 Ribonuclease HII N8D55_15450 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N8D55_15450 PF07733 Bacterial DNA polymerase III alpha NTPase domain N8D55_15450 PF02811 PHP domain N8D55_15450 PF01336 OB-fold nucleic acid binding domain N8D55_15450 PF14579 Helix-hairpin-helix motif N8D55_15455 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N8D55_15455 PF14579 Helix-hairpin-helix motif N8D55_15455 PF02811 PHP domain N8D55_15455 PF01336 OB-fold nucleic acid binding domain N8D55_15455 PF07733 Bacterial DNA polymerase III alpha NTPase domain N8D55_15460 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit N8D55_15470 PF03653 Uncharacterised protein family (UPF0093) N8D55_15490 PF03551 Transcriptional regulator PadR-like family N8D55_15515 PF02592 Putative vitamin uptake transporter N8D55_15520 PF01810 LysE type translocator N8D55_15540 PF02574 Homocysteine S-methyltransferase N8D55_15550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N8D55_15555 PF13732 Domain of unknown function (DUF4162) N8D55_15555 PF00005 ABC transporter N8D55_15570 PF09334 tRNA synthetases class I (M) N8D55_15570 PF01588 Putative tRNA binding domain N8D55_15580 PF04060 Putative Fe-S cluster N8D55_15595 PF04542 Sigma-70 region 2 N8D55_15595 PF04545 Sigma-70, region 4 N8D55_15645 PF01042 Endoribonuclease L-PSP N8D55_15695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N8D55_15710 PF08274 PhnA Zinc-Ribbon N8D55_15710 PF03831 PhnA domain N8D55_15720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N8D55_15745 PF04542 Sigma-70 region 2 N8D55_15745 PF08281 Sigma-70, region 4 N8D55_15760 PF01258 Prokaryotic dksA/traR C4-type zinc finger N8D55_15770 PF07043 Protein of unknown function (DUF1328) N8D55_15775 PF01863 Protein of unknown function DUF45 N8D55_15790 PF03797 Autotransporter beta-domain N8D55_15790 PF12951 Passenger-associated-transport-repeat N8D55_15790 PF00082 Subtilase family N8D55_15795 PF02803 Thiolase, C-terminal domain N8D55_15795 PF00108 Thiolase, N-terminal domain N8D55_15810 PF00072 Response regulator receiver domain N8D55_15810 PF00990 Diguanylate cyclase, GGDEF domain N8D55_15825 PF04675 DNA ligase N terminus N8D55_15825 PF04679 ATP dependent DNA ligase C terminal region N8D55_15825 PF01068 ATP dependent DNA ligase domain N8D55_15835 PF04679 ATP dependent DNA ligase C terminal region N8D55_15835 PF01068 ATP dependent DNA ligase domain N8D55_15835 PF04675 DNA ligase N terminus N8D55_15840 PF00270 DEAD/DEAH box helicase N8D55_15840 PF08494 DEAD/H associated N8D55_15840 PF00271 Helicase conserved C-terminal domain N8D55_15855 PF00313 'Cold-shock' DNA-binding domain N8D55_15860 PF01048 Phosphorylase superfamily N8D55_15865 PF00156 Phosphoribosyl transferase domain N8D55_15870 PF00933 Glycosyl hydrolase family 3 N terminal domain N8D55_15875 PF04244 Deoxyribodipyrimidine photo-lyase-related protein N8D55_15880 PF01593 Flavin containing amine oxidoreductase N8D55_15885 PF01323 DSBA-like thioredoxin domain N8D55_15890 PF01928 CYTH domain N8D55_15910 PF00072 Response regulator receiver domain N8D55_15910 PF00486 Transcriptional regulatory protein, C terminal N8D55_15915 PF02565 Recombination protein O C terminal N8D55_15915 PF11967 Recombination protein O N terminal N8D55_15920 PF07650 KH domain N8D55_15920 PF01926 50S ribosome-binding GTPase N8D55_15925 PF14622 Ribonuclease-III-like N8D55_15925 PF00035 Double-stranded RNA binding motif N8D55_15945 PF13180 PDZ domain N8D55_15955 PF08281 Sigma-70, region 4 N8D55_15955 PF04542 Sigma-70 region 2 N8D55_15960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N8D55_15960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N8D55_15960 PF00378 Enoyl-CoA hydratase/isomerase N8D55_15965 PF07715 TonB-dependent Receptor Plug Domain N8D55_15965 PF00593 TonB dependent receptor N8D55_15970 PF13181 Tetratricopeptide repeat N8D55_15990 PF01545 Cation efflux family N8D55_15995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N8D55_15995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N8D55_16005 PF00378 Enoyl-CoA hydratase/isomerase N8D55_16010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N8D55_16010 PF02770 Acyl-CoA dehydrogenase, middle domain N8D55_16010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N8D55_16015 PF00171 Aldehyde dehydrogenase family N8D55_16020 PF09856 Predicted transcriptional regulator (DUF2083) N8D55_16020 PF06114 IrrE N-terminal-like domain N8D55_16020 PF01381 Helix-turn-helix N8D55_16045 PF00155 Aminotransferase class I and II N8D55_16060 PF00266 Aminotransferase class-V N8D55_16070 PF03301 Tryptophan 2,3-dioxygenase N8D55_16095 PF00141 Peroxidase N8D55_16100 PF01479 S4 domain N8D55_16105 PF01554 MatE N8D55_16110 PF01245 Ribosomal protein L19 N8D55_16115 PF01746 tRNA (Guanine-1)-methyltransferase N8D55_16120 PF01782 RimM N-terminal domain N8D55_16120 PF05239 PRC-barrel domain N8D55_16125 PF00886 Ribosomal protein S16 N8D55_16135 PF03060 Nitronate monooxygenase N8D55_16140 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) N8D55_16150 PF02978 Signal peptide binding domain N8D55_16150 PF00448 SRP54-type protein, GTPase domain N8D55_16150 PF02881 SRP54-type protein, helical bundle domain N8D55_16155 PF01578 Cytochrome C assembly protein N8D55_16170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_16170 PF03466 LysR substrate binding domain N8D55_16185 PF00072 Response regulator receiver domain N8D55_16200 PF01739 CheR methyltransferase, SAM binding domain N8D55_16200 PF03705 CheR methyltransferase, all-alpha domain N8D55_16205 PF01339 CheB methylesterase N8D55_16205 PF00072 Response regulator receiver domain N8D55_16210 PF13493 Domain of unknown function (DUF4118) N8D55_16210 PF13492 GAF domain N8D55_16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_16210 PF00512 His Kinase A (phospho-acceptor) domain N8D55_16210 PF02702 Osmosensitive K+ channel His kinase sensor domain N8D55_16215 PF07237 Protein of unknown function (DUF1428) N8D55_16240 PF00512 His Kinase A (phospho-acceptor) domain N8D55_16240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_16240 PF00072 Response regulator receiver domain N8D55_16240 PF13188 PAS domain N8D55_16240 PF08448 PAS fold N8D55_16245 PF17149 Periplasmic sensor domain found in signal transduction proteins N8D55_16245 PF00672 HAMP domain N8D55_16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_16245 PF00512 His Kinase A (phospho-acceptor) domain N8D55_16245 PF01627 Hpt domain N8D55_16245 PF00072 Response regulator receiver domain N8D55_16255 PF13581 Histidine kinase-like ATPase domain N8D55_16270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N8D55_16285 PF12833 Helix-turn-helix domain N8D55_16295 PF05656 Protein of unknown function (DUF805) N8D55_16300 PF18073 Rubredoxin metal binding domain N8D55_16310 PF03626 Prokaryotic Cytochrome C oxidase subunit IV N8D55_16320 PF00115 Cytochrome C and Quinol oxidase polypeptide I N8D55_16325 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N8D55_16325 PF06481 COX Aromatic Rich Motif N8D55_16335 PF02401 LytB protein N8D55_16340 PF01252 Signal peptidase (SPase) II N8D55_16350 PF06574 FAD synthetase N8D55_16350 PF01687 Riboflavin kinase N8D55_16355 PF03023 Lipid II flippase MurJ N8D55_16360 PF01649 Ribosomal protein S20 N8D55_16365 PF01926 50S ribosome-binding GTPase N8D55_16365 PF01018 GTP1/OBG N8D55_16370 PF01016 Ribosomal L27 protein N8D55_16375 PF00829 Ribosomal prokaryotic L21 protein N8D55_16380 PF17760 UvrA interaction domain N8D55_16380 PF00005 ABC transporter N8D55_16380 PF17755 UvrA DNA-binding domain N8D55_16420 PF04376 Arginine-tRNA-protein transferase, N terminus N8D55_16420 PF04377 Arginine-tRNA-protein transferase, C terminus N8D55_16445 PF02222 ATP-grasp domain N8D55_16445 PF01370 NAD dependent epimerase/dehydratase family N8D55_16475 PF00730 HhH-GPD superfamily base excision DNA repair protein N8D55_16490 PF00196 Bacterial regulatory proteins, luxR family N8D55_16490 PF00072 Response regulator receiver domain N8D55_16495 PF07730 Histidine kinase N8D55_16505 PF05209 Septum formation inhibitor MinC, N-terminal domain N8D55_16505 PF03775 Septum formation inhibitor MinC, C-terminal domain N8D55_16510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain N8D55_16515 PF03776 Septum formation topological specificity factor MinE N8D55_16525 PF00512 His Kinase A (phospho-acceptor) domain N8D55_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_16530 PF00486 Transcriptional regulatory protein, C terminal N8D55_16530 PF00072 Response regulator receiver domain N8D55_16545 PF00884 Sulfatase N8D55_16545 PF08019 Phosphoethanolamine transferase EptA/EptB N8D55_16580 PF00248 Aldo/keto reductase family N8D55_16590 PF06628 Catalase-related immune-responsive N8D55_16590 PF00199 Catalase N8D55_16590 PF18011 C-terminal domain found in long catalases N8D55_16595 PF12833 Helix-turn-helix domain N8D55_16595 PF02311 AraC-like ligand binding domain N8D55_16615 PF03169 OPT oligopeptide transporter protein N8D55_16630 PF07733 Bacterial DNA polymerase III alpha NTPase domain N8D55_16630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N8D55_16630 PF14579 Helix-hairpin-helix motif N8D55_16630 PF02811 PHP domain N8D55_16645 PF00717 Peptidase S24-like N8D55_16645 PF01726 LexA DNA binding domain N8D55_16665 PF00328 Histidine phosphatase superfamily (branch 2) N8D55_16680 PF08281 Sigma-70, region 4 N8D55_16680 PF04542 Sigma-70 region 2 N8D55_16695 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase N8D55_16695 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N8D55_16705 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_16705 PF00107 Zinc-binding dehydrogenase N8D55_16710 PF14310 Fibronectin type III-like domain N8D55_16710 PF00933 Glycosyl hydrolase family 3 N terminal domain N8D55_16710 PF01915 Glycosyl hydrolase family 3 C-terminal domain N8D55_16725 PF17755 UvrA DNA-binding domain N8D55_16830 PF00580 UvrD/REP helicase N-terminal domain N8D55_16830 PF13361 UvrD-like helicase C-terminal domain N8D55_16855 PF01555 DNA methylase N8D55_16860 PF01555 DNA methylase N8D55_16895 PF02661 Fic/DOC family N8D55_16900 PF00665 Integrase core domain N8D55_16900 PF13276 HTH-like domain N8D55_16900 PF13333 Integrase core domain N8D55_16905 PF02384 N-6 DNA Methylase N8D55_16910 PF01420 Type I restriction modification DNA specificity domain N8D55_16950 PF00709 Adenylosuccinate synthetase N8D55_16960 PF01145 SPFH domain / Band 7 family N8D55_16965 PF12221 Bacterial membrane protein N terminal N8D55_16965 PF01145 SPFH domain / Band 7 family N8D55_16970 PF00072 Response regulator receiver domain N8D55_16975 PF01556 DnaJ C terminal domain N8D55_16975 PF00226 DnaJ domain N8D55_16985 PF08534 Redoxin N8D55_16995 PF06832 Penicillin-Binding Protein C-terminus Family N8D55_16995 PF00912 Transglycosylase N8D55_16995 PF00905 Penicillin binding protein transpeptidase domain N8D55_17035 PF07715 TonB-dependent Receptor Plug Domain N8D55_17035 PF00593 TonB dependent receptor N8D55_17040 PF04303 PrpF protein N8D55_17050 PF00285 Citrate synthase, C-terminal domain N8D55_17060 PF00158 Sigma-54 interaction domain N8D55_17060 PF02954 Bacterial regulatory protein, Fis family N8D55_17060 PF06506 Propionate catabolism activator N8D55_17070 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system N8D55_17075 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system N8D55_17090 PF09115 DNA polymerase III, delta subunit, C terminal N8D55_17095 PF02618 YceG-like family N8D55_17100 PF04715 Anthranilate synthase component I, N terminal region N8D55_17100 PF00425 chorismate binding enzyme N8D55_17105 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_17105 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_17110 PF00550 Phosphopantetheine attachment site N8D55_17120 PF00698 Acyl transferase domain N8D55_17130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N8D55_17130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N8D55_17135 PF01783 Ribosomal L32p protein family N8D55_17140 PF02620 Large ribosomal RNA subunit accumulation protein YceD N8D55_17145 PF02545 Maf-like protein N8D55_17160 PF07726 ATPase family associated with various cellular activities (AAA) N8D55_17160 PF17863 AAA lid domain N8D55_17170 PF13559 Domain of unknown function (DUF4129) N8D55_17170 PF11992 Domain of unknown function (DUF3488) N8D55_17170 PF01841 Transglutaminase-like superfamily N8D55_17180 PF01230 HIT domain N8D55_17185 PF13662 Toprim domain N8D55_17185 PF02132 RecR protein N8D55_17190 PF02575 YbaB/EbfC DNA-binding family N8D55_17295 PF02391 MoaE protein N8D55_17300 PF02597 ThiS family N8D55_17305 PF01967 MoaC family N8D55_17310 PF06463 Molybdenum Cofactor Synthesis C N8D55_17310 PF04055 Radical SAM superfamily N8D55_17345 PF00929 Exonuclease N8D55_17350 PF00075 RNase H N8D55_17360 PF16123 Hydroxyacylglutathione hydrolase C-terminus N8D55_17360 PF00753 Metallo-beta-lactamase superfamily N8D55_17390 PF00216 Bacterial DNA-binding protein N8D55_17395 PF00004 ATPase family associated with various cellular activities (AAA) N8D55_17395 PF05362 Lon protease (S16) C-terminal proteolytic domain N8D55_17395 PF02190 ATP-dependent protease La (LON) substrate-binding domain N8D55_17400 PF10431 C-terminal, D2-small domain, of ClpB protein N8D55_17400 PF07724 AAA domain (Cdc48 subfamily) N8D55_17400 PF06689 ClpX C4-type zinc finger N8D55_17405 PF00574 Clp protease N8D55_17410 PF05698 Bacterial trigger factor protein (TF) C-terminus N8D55_17410 PF05697 Bacterial trigger factor protein (TF) N8D55_17420 PF13188 PAS domain N8D55_17420 PF00072 Response regulator receiver domain N8D55_17420 PF08448 PAS fold N8D55_17420 PF00512 His Kinase A (phospho-acceptor) domain N8D55_17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_17455 PF00180 Isocitrate/isopropylmalate dehydrogenase N8D55_17465 PF00462 Glutaredoxin N8D55_17475 PF00486 Transcriptional regulatory protein, C terminal N8D55_17475 PF00072 Response regulator receiver domain N8D55_17480 PF11808 Phosphate regulon sensor protein PhoR N8D55_17480 PF00989 PAS fold N8D55_17480 PF00512 His Kinase A (phospho-acceptor) domain N8D55_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_17500 PF01569 PAP2 superfamily N8D55_17505 PF00149 Calcineurin-like phosphoesterase N8D55_17525 PF00156 Phosphoribosyl transferase domain N8D55_17540 PF02875 Mur ligase family, glutamate ligase domain N8D55_17540 PF08245 Mur ligase middle domain N8D55_17555 PF00300 Histidine phosphatase superfamily (branch 1) N8D55_17560 PF10459 Peptidase S46 N8D55_17565 PF04185 Phosphoesterase family N8D55_17565 PF05506 Domain of unknown function (DUF756) N8D55_17575 PF00107 Zinc-binding dehydrogenase N8D55_17575 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_17590 PF12857 TOBE-like domain N8D55_17590 PF17850 CysA C-terminal regulatory domain N8D55_17590 PF00005 ABC transporter N8D55_17600 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_17610 PF00155 Aminotransferase class I and II N8D55_17620 PF00849 RNA pseudouridylate synthase N8D55_17630 PF00223 Photosystem I psaA/psaB protein N8D55_17630 PF00691 OmpA family N8D55_17635 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_17635 PF00107 Zinc-binding dehydrogenase N8D55_17660 PF00043 Glutathione S-transferase, C-terminal domain N8D55_17660 PF02798 Glutathione S-transferase, N-terminal domain N8D55_17665 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N8D55_17665 PF00056 lactate/malate dehydrogenase, NAD binding domain N8D55_17670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N8D55_17675 PF00009 Elongation factor Tu GTP binding domain N8D55_17675 PF00679 Elongation factor G C-terminus N8D55_17675 PF03144 Elongation factor Tu domain 2 N8D55_17685 PF01425 Amidase N8D55_17695 PF01474 Class-II DAHP synthetase family N8D55_17700 PF02600 Disulfide bond formation protein DsbB N8D55_17705 PF01196 Ribosomal protein L17 N8D55_17710 PF01000 RNA polymerase Rpb3/RpoA insert domain N8D55_17710 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain N8D55_17710 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain N8D55_17715 PF00163 Ribosomal protein S4/S9 N-terminal domain N8D55_17715 PF01479 S4 domain N8D55_17720 PF00411 Ribosomal protein S11 N8D55_17725 PF00416 Ribosomal protein S13/S18 N8D55_17730 PF00344 SecY translocase N8D55_17735 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A N8D55_17740 PF00327 Ribosomal protein L30p/L7e N8D55_17745 PF00333 Ribosomal protein S5, N-terminal domain N8D55_17745 PF03719 Ribosomal protein S5, C-terminal domain N8D55_17750 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast N8D55_17755 PF00347 Ribosomal protein L6 N8D55_17760 PF00410 Ribosomal protein S8 N8D55_17765 PF00253 Ribosomal protein S14p/S29e N8D55_17770 PF00673 ribosomal L5P family C-terminus N8D55_17770 PF00281 Ribosomal protein L5 N8D55_17775 PF00467 KOW motif N8D55_17775 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 N8D55_17780 PF00238 Ribosomal protein L14p/L23e N8D55_17785 PF00366 Ribosomal protein S17 N8D55_17790 PF00831 Ribosomal L29 protein N8D55_17795 PF00252 Ribosomal protein L16p/L10e N8D55_17800 PF07650 KH domain N8D55_17800 PF00189 Ribosomal protein S3, C-terminal domain N8D55_17805 PF00237 Ribosomal protein L22p/L17e N8D55_17810 PF00203 Ribosomal protein S19 N8D55_17815 PF00181 Ribosomal Proteins L2, RNA binding domain N8D55_17815 PF03947 Ribosomal Proteins L2, C-terminal domain N8D55_17820 PF00276 Ribosomal protein L23 N8D55_17825 PF00573 Ribosomal protein L4/L1 family N8D55_17830 PF00297 Ribosomal protein L3 N8D55_17835 PF00338 Ribosomal protein S10p/S20e N8D55_17840 PF00009 Elongation factor Tu GTP binding domain N8D55_17840 PF03143 Elongation factor Tu C-terminal domain N8D55_17840 PF03144 Elongation factor Tu domain 2 N8D55_17845 PF00009 Elongation factor Tu GTP binding domain N8D55_17845 PF03764 Elongation factor G, domain IV N8D55_17845 PF14492 Elongation Factor G, domain II N8D55_17845 PF00679 Elongation factor G C-terminus N8D55_17845 PF03144 Elongation factor Tu domain 2 N8D55_17850 PF00177 Ribosomal protein S7p/S5e N8D55_17855 PF00164 Ribosomal protein S12/S23 N8D55_17860 PF05000 RNA polymerase Rpb1, domain 4 N8D55_17860 PF04998 RNA polymerase Rpb1, domain 5 N8D55_17860 PF00623 RNA polymerase Rpb1, domain 2 N8D55_17860 PF04983 RNA polymerase Rpb1, domain 3 N8D55_17860 PF04997 RNA polymerase Rpb1, domain 1 N8D55_17865 PF04563 RNA polymerase beta subunit N8D55_17865 PF04561 RNA polymerase Rpb2, domain 2 N8D55_17865 PF04565 RNA polymerase Rpb2, domain 3 N8D55_17865 PF10385 RNA polymerase beta subunit external 1 domain N8D55_17865 PF04560 RNA polymerase Rpb2, domain 7 N8D55_17865 PF00562 RNA polymerase Rpb2, domain 6 N8D55_17870 PF16320 Ribosomal protein L7/L12 dimerisation domain N8D55_17870 PF00542 Ribosomal protein L7/L12 C-terminal domain N8D55_17875 PF00466 Ribosomal protein L10 N8D55_17880 PF00687 Ribosomal protein L1p/L10e family N8D55_17885 PF00298 Ribosomal protein L11, RNA binding domain N8D55_17885 PF03946 Ribosomal protein L11, N-terminal domain N8D55_17890 PF00467 KOW motif N8D55_17890 PF02357 Transcription termination factor nusG N8D55_17895 PF00584 SecE/Sec61-gamma subunits of protein translocation complex N8D55_17905 PF00009 Elongation factor Tu GTP binding domain N8D55_17905 PF03143 Elongation factor Tu C-terminal domain N8D55_17905 PF03144 Elongation factor Tu domain 2 N8D55_17930 PF01195 Peptidyl-tRNA hydrolase N8D55_17935 PF14693 Ribosomal protein TL5, C-terminal domain N8D55_17935 PF01386 Ribosomal L25p family N8D55_17940 PF14572 Phosphoribosyl synthetase-associated domain N8D55_17940 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase N8D55_17955 PF03550 Outer membrane lipoprotein LolB N8D55_17970 PF03462 PCRF domain N8D55_17970 PF00472 RF-1 domain N8D55_17980 PF00994 Probable molybdopterin binding domain N8D55_17995 PF00708 Acylphosphatase N8D55_18010 PF03358 NADPH-dependent FMN reductase N8D55_18025 PF04073 Aminoacyl-tRNA editing domain N8D55_18030 PF00082 Subtilase family N8D55_18030 PF04151 Bacterial pre-peptidase C-terminal domain N8D55_18035 PF00082 Subtilase family N8D55_18035 PF04151 Bacterial pre-peptidase C-terminal domain N8D55_18045 PF04151 Bacterial pre-peptidase C-terminal domain N8D55_18045 PF00082 Subtilase family N8D55_18050 PF01063 Amino-transferase class IV N8D55_18115 PF00476 DNA polymerase family A N8D55_18115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N8D55_18115 PF01367 5'-3' exonuclease, C-terminal SAM fold N8D55_18115 PF01612 3'-5' exonuclease N8D55_18120 PF00293 NUDIX domain N8D55_18130 PF00561 alpha/beta hydrolase fold N8D55_18135 PF17827 PrmC N-terminal domain N8D55_18135 PF05175 Methyltransferase small domain N8D55_18140 PF00578 AhpC/TSA family N8D55_18140 PF10417 C-terminal domain of 1-Cys peroxiredoxin N8D55_18145 PF07992 Pyridine nucleotide-disulphide oxidoreductase N8D55_18145 PF13192 Thioredoxin domain N8D55_18155 PF14760 Rnk N-terminus N8D55_18155 PF01272 Transcription elongation factor, GreA/GreB, C-term N8D55_18170 PF01625 Peptide methionine sulfoxide reductase N8D55_18180 PF00196 Bacterial regulatory proteins, luxR family N8D55_18180 PF00072 Response regulator receiver domain N8D55_18230 PF01728 FtsJ-like methyltransferase N8D55_18230 PF18125 RlmM ferredoxin-like domain N8D55_18240 PF08450 SMP-30/Gluconolactonase/LRE-like region N8D55_18260 PF00378 Enoyl-CoA hydratase/isomerase N8D55_18265 PF00171 Aldehyde dehydrogenase family N8D55_18285 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase N8D55_18290 PF07729 FCD domain N8D55_18290 PF00392 Bacterial regulatory proteins, gntR family N8D55_18310 PF01494 FAD binding domain N8D55_18330 PF00850 Histone deacetylase domain N8D55_18340 PF00639 PPIC-type PPIASE domain N8D55_18340 PF09312 SurA N-terminal domain N8D55_18345 PF04166 Pyridoxal phosphate biosynthetic protein PdxA N8D55_18350 PF00398 Ribosomal RNA adenine dimethylase N8D55_18355 PF04379 ApaG domain N8D55_18365 PF03358 NADPH-dependent FMN reductase N8D55_18370 PF00296 Luciferase-like monooxygenase N8D55_18380 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_18385 PF00005 ABC transporter N8D55_18390 PF08028 Acyl-CoA dehydrogenase, C-terminal domain N8D55_18390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N8D55_18395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N8D55_18395 PF08028 Acyl-CoA dehydrogenase, C-terminal domain N8D55_18400 PF00186 Dihydrofolate reductase N8D55_18405 PF00303 Thymidylate synthase N8D55_18430 PF01219 Prokaryotic diacylglycerol kinase N8D55_18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_18440 PF08521 Two-component sensor kinase N-terminal N8D55_18440 PF00512 His Kinase A (phospho-acceptor) domain N8D55_18445 PF00486 Transcriptional regulatory protein, C terminal N8D55_18445 PF00072 Response regulator receiver domain N8D55_18450 PF13472 GDSL-like Lipase/Acylhydrolase family N8D55_18455 PF00005 ABC transporter N8D55_18465 PF02668 Taurine catabolism dioxygenase TauD, TfdA family N8D55_18475 PF00005 ABC transporter N8D55_18480 PF00528 Binding-protein-dependent transport system inner membrane component N8D55_18500 PF07715 TonB-dependent Receptor Plug Domain N8D55_18500 PF00593 TonB dependent receptor N8D55_18510 PF00248 Aldo/keto reductase family N8D55_18515 PF07670 Nucleoside recognition N8D55_18515 PF07662 Na+ dependent nucleoside transporter C-terminus N8D55_18515 PF01773 Na+ dependent nucleoside transporter N-terminus N8D55_18530 PF13649 Methyltransferase domain N8D55_18540 PF02772 S-adenosylmethionine synthetase, central domain N8D55_18540 PF00438 S-adenosylmethionine synthetase, N-terminal domain N8D55_18540 PF02773 S-adenosylmethionine synthetase, C-terminal domain N8D55_18545 PF00328 Histidine phosphatase superfamily (branch 2) N8D55_18570 PF00311 Phosphoenolpyruvate carboxylase N8D55_18580 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain N8D55_18580 PF05221 S-adenosyl-L-homocysteine hydrolase N8D55_18585 PF04607 Region found in RelA / SpoT proteins N8D55_18630 PF16197 Ketoacyl-synthetase C-terminal extension N8D55_18630 PF00107 Zinc-binding dehydrogenase N8D55_18630 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_18630 PF08659 KR domain N8D55_18630 PF00550 Phosphopantetheine attachment site N8D55_18630 PF14765 Polyketide synthase dehydratase N8D55_18630 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_18630 PF00698 Acyl transferase domain N8D55_18630 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_18640 PF02219 Methylenetetrahydrofolate reductase N8D55_18665 PF07516 SecA Wing and Scaffold domain N8D55_18665 PF01043 SecA preprotein cross-linking domain N8D55_18665 PF07517 SecA DEAD-like domain N8D55_18665 PF02810 SEC-C motif N8D55_18670 PF01476 LysM domain N8D55_18670 PF01551 Peptidase family M23 N8D55_18670 PF08525 Opacity-associated protein A N-terminal motif N8D55_18680 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase N8D55_18690 PF02491 SHS2 domain inserted in FTSA N8D55_18700 PF07478 D-ala D-ala ligase C-terminus N8D55_18700 PF01820 D-ala D-ala ligase N-terminus N8D55_18705 PF02875 Mur ligase family, glutamate ligase domain N8D55_18705 PF08245 Mur ligase middle domain N8D55_18705 PF01225 Mur ligase family, catalytic domain N8D55_18715 PF01098 Cell cycle protein N8D55_18720 PF00953 Glycosyl transferase family 4 N8D55_18725 PF08245 Mur ligase middle domain N8D55_18725 PF01225 Mur ligase family, catalytic domain N8D55_18725 PF02875 Mur ligase family, glutamate ligase domain N8D55_18730 PF01225 Mur ligase family, catalytic domain N8D55_18730 PF02875 Mur ligase family, glutamate ligase domain N8D55_18730 PF08245 Mur ligase middle domain N8D55_18735 PF03717 Penicillin-binding Protein dimerisation domain N8D55_18735 PF00905 Penicillin binding protein transpeptidase domain N8D55_18740 PF04999 Cell division protein FtsL N8D55_18745 PF01795 MraW methylase family N8D55_18750 PF02381 MraZ protein, putative antitoxin-like N8D55_18775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N8D55_18785 PF02021 Uncharacterised protein family UPF0102 N8D55_18790 PF04307 LexA-binding, inner membrane-associated putative hydrolase N8D55_18795 PF02913 FAD linked oxidases, C-terminal domain N8D55_18795 PF01565 FAD binding domain N8D55_18800 PF07676 WD40-like Beta Propeller Repeat N8D55_18800 PF00326 Prolyl oligopeptidase family N8D55_18805 PF00072 Response regulator receiver domain N8D55_18805 PF00486 Transcriptional regulatory protein, C terminal N8D55_18815 PF02669 K+-transporting ATPase, c chain N8D55_18825 PF03814 Potassium-transporting ATPase A subunit N8D55_18840 PF00586 AIR synthase related protein, N-terminal domain N8D55_18840 PF02769 AIR synthase related protein, C-terminal domain N8D55_18845 PF01029 NusB family N8D55_18850 PF00885 6,7-dimethyl-8-ribityllumazine synthase N8D55_18860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N8D55_18860 PF00925 GTP cyclohydrolase II N8D55_18865 PF00677 Lumazine binding domain N8D55_18875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N8D55_18875 PF01872 RibD C-terminal domain N8D55_18890 PF00464 Serine hydroxymethyltransferase N8D55_18900 PF00005 ABC transporter N8D55_18900 PF12848 ABC transporter N8D55_18905 PF01327 Polypeptide deformylase N8D55_18920 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family N8D55_18920 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain N8D55_18965 PF00392 Bacterial regulatory proteins, gntR family N8D55_18965 PF07702 UTRA domain N8D55_18980 PF00263 Bacterial type II and III secretion system protein N8D55_18980 PF03958 Bacterial type II/III secretion system short domain N8D55_18995 PF05137 Fimbrial assembly protein (PilN) N8D55_19000 PF03934 Type II secretion system (T2SS), protein K N8D55_19010 PF07963 Prokaryotic N-terminal methylation motif N8D55_19025 PF08334 Type II secretion system (T2SS), protein G N8D55_19035 PF00437 Type II/IV secretion system protein N8D55_19035 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain N8D55_19060 PF13018 Extended Signal Peptide of Type V secretion system N8D55_19060 PF03895 YadA-like membrane anchor domain N8D55_19060 PF05658 Head domain of trimeric autotransporter adhesin N8D55_19060 PF05662 Coiled stalk of trimeric autotransporter adhesin N8D55_19075 PF10411 Disulfide bond isomerase protein N-terminus N8D55_19075 PF13098 Thioredoxin-like domain N8D55_19080 PF00589 Phage integrase family N8D55_19080 PF02899 Phage integrase, N-terminal SAM-like domain N8D55_19100 PF00883 Cytosol aminopeptidase family, catalytic domain N8D55_19100 PF02789 Cytosol aminopeptidase family, N-terminal domain N8D55_19110 PF08264 Anticodon-binding domain of tRNA N8D55_19110 PF00133 tRNA synthetases class I (I, L, M and V) N8D55_19110 PF10458 Valyl tRNA synthetase tRNA binding arm N8D55_19125 PF00544 Pectate lyase N8D55_19155 PF03129 Anticodon binding domain N8D55_19155 PF04073 Aminoacyl-tRNA editing domain N8D55_19155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N8D55_19170 PF02405 Permease MlaE N8D55_19175 PF00005 ABC transporter N8D55_19180 PF03886 ABC-type transport auxiliary lipoprotein component N8D55_19180 PF02470 MlaD protein N8D55_19215 PF01144 Coenzyme A transferase N8D55_19220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N8D55_19220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N8D55_19220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N8D55_19220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N8D55_19225 PF01050 Mannose-6-phosphate isomerase N8D55_19225 PF00483 Nucleotidyl transferase N8D55_19235 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N8D55_19240 PF00483 Nucleotidyl transferase N8D55_19245 PF16363 GDP-mannose 4,6 dehydratase N8D55_19255 PF00766 Electron transfer flavoprotein FAD-binding domain N8D55_19255 PF01012 Electron transfer flavoprotein domain N8D55_19265 PF00535 Glycosyl transferase family 2 N8D55_19290 PF16363 GDP-mannose 4,6 dehydratase N8D55_19305 PF13439 Glycosyltransferase Family 4 N8D55_19305 PF00534 Glycosyl transferases group 1 N8D55_19315 PF13847 Methyltransferase domain N8D55_19315 PF00069 Protein kinase domain N8D55_19320 PF00005 ABC transporter N8D55_19340 PF00571 CBS domain N8D55_19340 PF00291 Pyridoxal-phosphate dependent enzyme N8D55_19360 PF00437 Type II/IV secretion system protein N8D55_19365 PF14497 Glutathione S-transferase, C-terminal domain N8D55_19365 PF02798 Glutathione S-transferase, N-terminal domain N8D55_19375 PF00270 DEAD/DEAH box helicase N8D55_19375 PF00271 Helicase conserved C-terminal domain N8D55_19385 PF07715 TonB-dependent Receptor Plug Domain N8D55_19385 PF00593 TonB dependent receptor N8D55_19390 PF01242 6-pyruvoyl tetrahydropterin synthase N8D55_19405 PF12728 Helix-turn-helix domain N8D55_19430 PF00756 Putative esterase N8D55_19435 PF07715 TonB-dependent Receptor Plug Domain N8D55_19435 PF00593 TonB dependent receptor N8D55_19440 PF13419 Haloacid dehalogenase-like hydrolase N8D55_19450 PF07977 FabA-like domain N8D55_19455 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_19455 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_19465 PF01432 Peptidase family M3 N8D55_19480 PF00394 Multicopper oxidase N8D55_19480 PF07731 Multicopper oxidase N8D55_19480 PF07732 Multicopper oxidase N8D55_19485 PF05275 Copper resistance protein B precursor (CopB) N8D55_19490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N8D55_19530 PF00005 ABC transporter N8D55_19555 PF00005 ABC transporter N8D55_19555 PF02687 FtsX-like permease family N8D55_19555 PF12704 MacB-like periplasmic core domain N8D55_19560 PF02954 Bacterial regulatory protein, Fis family N8D55_19560 PF00072 Response regulator receiver domain N8D55_19560 PF00158 Sigma-54 interaction domain N8D55_19575 PF00132 Bacterial transferase hexapeptide (six repeats) N8D55_19575 PF14602 Hexapeptide repeat of succinyl-transferase N8D55_19575 PF12804 MobA-like NTP transferase domain N8D55_19585 PF01817 Chorismate mutase type II N8D55_19590 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N8D55_19590 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain N8D55_19595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N8D55_19595 PF02874 ATP synthase alpha/beta family, beta-barrel domain N8D55_19600 PF00231 ATP synthase N8D55_19605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N8D55_19605 PF00306 ATP synthase alpha/beta chain, C terminal domain N8D55_19605 PF02874 ATP synthase alpha/beta family, beta-barrel domain N8D55_19610 PF00213 ATP synthase delta (OSCP) subunit N8D55_19615 PF00430 ATP synthase B/B' CF(0) N8D55_19620 PF00137 ATP synthase subunit C N8D55_19625 PF00119 ATP synthase A chain N8D55_19645 PF07992 Pyridine nucleotide-disulphide oxidoreductase N8D55_19645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N8D55_19655 PF02817 e3 binding domain N8D55_19655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N8D55_19655 PF00364 Biotin-requiring enzyme N8D55_19685 PF03180 NLPA lipoprotein N8D55_19695 PF09383 NIL domain N8D55_19695 PF00005 ABC transporter N8D55_19705 PF04461 Protein of unknown function (DUF520) N8D55_19720 PF01479 S4 domain N8D55_19720 PF00849 RNA pseudouridylate synthase N8D55_19735 PF07995 Glucose / Sorbosone dehydrogenase N8D55_19745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_19745 PF00512 His Kinase A (phospho-acceptor) domain N8D55_19745 PF00072 Response regulator receiver domain N8D55_19745 PF00497 Bacterial extracellular solute-binding proteins, family 3 N8D55_19765 PF00842 Alanine racemase, C-terminal domain N8D55_19765 PF01168 Alanine racemase, N-terminal domain N8D55_19770 PF01266 FAD dependent oxidoreductase N8D55_19775 PF01037 Lrp/AsnC ligand binding domain N8D55_19800 PF01618 MotA/TolQ/ExbB proton channel family N8D55_19805 PF00691 OmpA family N8D55_19805 PF13677 Membrane MotB of proton-channel complex MotA/MotB N8D55_19830 PF01061 ABC-2 type transporter N8D55_19850 PF02469 Fasciclin domain N8D55_19865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase N8D55_19875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_19875 PF03466 LysR substrate binding domain N8D55_19880 PF03358 NADPH-dependent FMN reductase N8D55_19885 PF00248 Aldo/keto reductase family N8D55_19910 PF13520 Amino acid permease N8D55_19920 PF04397 LytTr DNA-binding domain N8D55_19920 PF00072 Response regulator receiver domain N8D55_19925 PF06580 Histidine kinase N8D55_19925 PF02743 Cache domain N8D55_19925 PF00672 HAMP domain N8D55_19925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_19945 PF05974 Domain of unknown function (DUF892) N8D55_19950 PF05067 Manganese containing catalase N8D55_19995 PF16363 GDP-mannose 4,6 dehydratase N8D55_20005 PF03275 UDP-galactopyranose mutase N8D55_20015 PF00664 ABC transporter transmembrane region N8D55_20015 PF00005 ABC transporter N8D55_20025 PF08240 Alcohol dehydrogenase GroES-like domain N8D55_20025 PF13823 Alcohol dehydrogenase GroES-associated N8D55_20025 PF00107 Zinc-binding dehydrogenase N8D55_20050 PF03466 LysR substrate binding domain N8D55_20050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_20055 PF07690 Major Facilitator Superfamily N8D55_20080 PF00593 TonB dependent receptor N8D55_20080 PF07715 TonB-dependent Receptor Plug Domain N8D55_20095 PF00005 ABC transporter N8D55_20105 PF03466 LysR substrate binding domain N8D55_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_20110 PF01042 Endoribonuclease L-PSP N8D55_20135 PF00672 HAMP domain N8D55_20135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N8D55_20135 PF02203 Tar ligand binding domain homologue N8D55_20160 PF01740 STAS domain N8D55_20160 PF00916 Sulfate permease family N8D55_20165 PF00557 Metallopeptidase family M24 N8D55_20195 PF07690 Major Facilitator Superfamily N8D55_20200 PF00440 Bacterial regulatory proteins, tetR family N8D55_20205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_20205 PF03466 LysR substrate binding domain N8D55_20210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N8D55_20240 PF00239 Resolvase, N terminal domain N8D55_20240 PF02796 Helix-turn-helix domain of resolvase N8D55_20265 PF07996 Type IV secretion system proteins N8D55_20300 PF00589 Phage integrase family N8D55_20315 PF04546 Sigma-70, non-essential region N8D55_20315 PF03979 Sigma-70 factor, region 1.1 N8D55_20315 PF00140 Sigma-70 factor, region 1.2 N8D55_20315 PF04542 Sigma-70 region 2 N8D55_20315 PF04539 Sigma-70 region 3 N8D55_20315 PF04545 Sigma-70, region 4 N8D55_20320 PF02580 D-Tyr-tRNA(Tyr) deacylase N8D55_20325 PF03279 Bacterial lipid A biosynthesis acyltransferase N8D55_20355 PF00535 Glycosyl transferase family 2 N8D55_20375 PF00551 Formyl transferase N8D55_20375 PF02911 Formyl transferase, C-terminal domain N8D55_20380 PF01327 Polypeptide deformylase N8D55_20390 PF02481 DNA recombination-mediator protein A N8D55_20390 PF17782 DprA winged helix domain N8D55_20395 PF04361 Protein of unknown function (DUF494) N8D55_20400 PF07963 Prokaryotic N-terminal methylation motif N8D55_20400 PF00114 Pilin (bacterial filament) N8D55_20410 PF01751 Toprim domain N8D55_20410 PF13368 Topoisomerase C-terminal repeat N8D55_20410 PF01131 DNA topoisomerase N8D55_20440 PF01343 Peptidase family S49 N8D55_20485 PF07992 Pyridine nucleotide-disulphide oxidoreductase N8D55_20490 PF03458 UPF0126 domain N8D55_20495 PF04542 Sigma-70 region 2 N8D55_20495 PF04545 Sigma-70, region 4 N8D55_20505 PF01339 CheB methylesterase N8D55_20505 PF00072 Response regulator receiver domain N8D55_20510 PF18075 FtsX extracellular domain N8D55_20515 PF00005 ABC transporter N8D55_20525 PF00085 Thioredoxin N8D55_20530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N8D55_20530 PF07498 Rho termination factor, N-terminal domain N8D55_20530 PF07497 Rho termination factor, RNA-binding domain N8D55_20585 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) N8D55_20590 PF00196 Bacterial regulatory proteins, luxR family N8D55_20590 PF00072 Response regulator receiver domain N8D55_20600 PF03971 Monomeric isocitrate dehydrogenase N8D55_20610 PF00756 Putative esterase N8D55_20610 PF01476 LysM domain N8D55_20615 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term N8D55_20615 PF14489 QueF-like protein N8D55_20620 PF07687 Peptidase dimerisation domain N8D55_20620 PF01546 Peptidase family M20/M25/M40 N8D55_20625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_20630 PF00873 AcrB/AcrD/AcrF family N8D55_20635 PF00873 AcrB/AcrD/AcrF family N8D55_20680 PF01427 D-ala-D-ala dipeptidase N8D55_20710 PF13378 Enolase C-terminal domain-like N8D55_20710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N8D55_20735 PF05360 yiaA/B two helix domain N8D55_20755 PF02152 Dihydroneopterin aldolase N8D55_20760 PF00814 Glycoprotease family N8D55_20765 PF01165 Ribosomal protein S21 N8D55_20770 PF09424 Yqey-like protein N8D55_20775 PF03631 Virulence factor BrkB N8D55_20785 PF13593 SBF-like CPA transporter family (DUF4137) N8D55_20795 PF01040 UbiA prenyltransferase family N8D55_20820 PF00510 Cytochrome c oxidase subunit III N8D55_20835 PF00115 Cytochrome C and Quinol oxidase polypeptide I N8D55_20840 PF02790 Cytochrome C oxidase subunit II, transmembrane domain N8D55_20840 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N8D55_20850 PF00171 Aldehyde dehydrogenase family N8D55_20850 PF01619 Proline dehydrogenase N8D55_20850 PF14850 DNA-binding domain of Proline dehydrogenase N8D55_20850 PF18327 Proline utilization A proline dehydrogenase N-terminal domain N8D55_20880 PF00579 tRNA synthetases class I (W and Y) N8D55_20885 PF01551 Peptidase family M23 N8D55_20885 PF04225 Opacity-associated protein A LysM-like domain N8D55_20890 PF03702 Anhydro-N-acetylmuramic acid kinase N8D55_20900 PF07690 Major Facilitator Superfamily N8D55_20920 PF13614 AAA domain N8D55_20935 PF01370 NAD dependent epimerase/dehydratase family N8D55_20940 PF00535 Glycosyl transferase family 2 N8D55_20955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N8D55_20955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N8D55_20955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N8D55_20955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N8D55_20960 PF00692 dUTPase N8D55_20970 PF04002 RadC-like JAB domain N8D55_20975 PF03485 Arginyl tRNA synthetase N terminal domain N8D55_20975 PF00750 tRNA synthetases class I (R) N8D55_20975 PF05746 DALR anticodon binding domain N8D55_20985 PF00106 short chain dehydrogenase N8D55_21010 PF00975 Thioesterase domain N8D55_21010 PF00668 Condensation domain N8D55_21010 PF13193 AMP-binding enzyme C-terminal domain N8D55_21010 PF00501 AMP-binding enzyme N8D55_21010 PF00550 Phosphopantetheine attachment site N8D55_21045 PF00543 Nitrogen regulatory protein P-II N8D55_21050 PF04380 Membrane fusogenic activity N8D55_21070 PF12792 CSS motif domain associated with EAL N8D55_21070 PF00563 EAL domain N8D55_21075 PF00487 Fatty acid desaturase N8D55_21080 PF00970 Oxidoreductase FAD-binding domain N8D55_21080 PF00111 2Fe-2S iron-sulfur cluster binding domain N8D55_21080 PF00175 Oxidoreductase NAD-binding domain N8D55_21085 PF00440 Bacterial regulatory proteins, tetR family N8D55_21120 PF01370 NAD dependent epimerase/dehydratase family N8D55_21120 PF08338 Domain of unknown function (DUF1731) N8D55_21170 PF01594 AI-2E family transporter N8D55_21175 PF13419 Haloacid dehalogenase-like hydrolase N8D55_21180 PF00883 Cytosol aminopeptidase family, catalytic domain N8D55_21180 PF02789 Cytosol aminopeptidase family, N-terminal domain N8D55_21210 PF00196 Bacterial regulatory proteins, luxR family N8D55_21210 PF00072 Response regulator receiver domain N8D55_21220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_21225 PF00005 ABC transporter N8D55_21230 PF01609 Transposase DDE domain N8D55_21230 PF05598 Transposase domain (DUF772) N8D55_21250 PF00892 EamA-like transporter family N8D55_21255 PF00892 EamA-like transporter family N8D55_21275 PF00753 Metallo-beta-lactamase superfamily N8D55_21280 PF00579 tRNA synthetases class I (W and Y) N8D55_21285 PF05532 CsbD-like N8D55_21300 PF00491 Arginase family N8D55_21325 PF02223 Thymidylate kinase N8D55_21340 PF03309 Type III pantothenate kinase N8D55_21345 PF02237 Biotin protein ligase C terminal domain N8D55_21345 PF03099 Biotin/lipoate A/B protein ligase family N8D55_21345 PF08279 HTH domain N8D55_21370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_21375 PF00072 Response regulator receiver domain N8D55_21375 PF00486 Transcriptional regulatory protein, C terminal N8D55_21385 PF01207 Dihydrouridine synthase (Dus) N8D55_21400 PF00199 Catalase N8D55_21400 PF06628 Catalase-related immune-responsive N8D55_21420 PF18317 Shikimate 5'-dehydrogenase C-terminal domain N8D55_21420 PF01488 Shikimate / quinate 5-dehydrogenase N8D55_21420 PF08501 Shikimate dehydrogenase substrate binding domain N8D55_21430 PF00667 FAD binding domain N8D55_21430 PF00175 Oxidoreductase NAD-binding domain N8D55_21430 PF00258 Flavodoxin N8D55_21445 PF00490 Delta-aminolevulinic acid dehydratase N8D55_21560 PF02798 Glutathione S-transferase, N-terminal domain N8D55_21560 PF00043 Glutathione S-transferase, C-terminal domain N8D55_21605 PF01381 Helix-turn-helix N8D55_21615 PF01229 Glycosyl hydrolases family 39 N8D55_21620 PF02583 Metal-sensitive transcriptional repressor N8D55_21630 PF00175 Oxidoreductase NAD-binding domain N8D55_21630 PF01383 CpcD/allophycocyanin linker domain N8D55_21635 PF00005 ABC transporter N8D55_21640 PF01061 ABC-2 type transporter N8D55_21685 PF03061 Thioesterase superfamily N8D55_21690 PF00085 Thioredoxin N8D55_21710 PF00268 Ribonucleotide reductase, small chain N8D55_21740 PF04886 PT repeat N8D55_21740 PF07715 TonB-dependent Receptor Plug Domain N8D55_21740 PF00593 TonB dependent receptor N8D55_21745 PF03448 MgtE intracellular N domain N8D55_21745 PF01769 Divalent cation transporter N8D55_21745 PF00571 CBS domain N8D55_21750 PF02254 TrkA-N domain N8D55_21750 PF00999 Sodium/hydrogen exchanger family N8D55_21760 PF00723 Glycosyl hydrolases family 15 N8D55_21770 PF05166 YcgL domain N8D55_21775 PF02801 Beta-ketoacyl synthase, C-terminal domain N8D55_21775 PF00109 Beta-ketoacyl synthase, N-terminal domain N8D55_21790 PF04820 Tryptophan halogenase N8D55_21825 PF01553 Acyltransferase N8D55_21835 PF00550 Phosphopantetheine attachment site N8D55_21875 PF01218 Coproporphyrinogen III oxidase N8D55_21880 PF01367 5'-3' exonuclease, C-terminal SAM fold N8D55_21880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N8D55_21880 PF00476 DNA polymerase family A N8D55_21880 PF01612 3'-5' exonuclease N8D55_21895 PF07238 PilZ domain N8D55_21895 PF00069 Protein kinase domain N8D55_21920 PF01734 Patatin-like phospholipase N8D55_21950 PF13091 PLD-like domain N8D55_21950 PF13396 Phospholipase_D-nuclease N-terminal N8D55_21955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N8D55_21955 PF03466 LysR substrate binding domain N8D55_21960 PF03737 Aldolase/RraA N8D55_21970 PF04909 Amidohydrolase N8D55_21980 PF00471 Ribosomal protein L33 N8D55_21985 PF00830 Ribosomal L28 family N8D55_21995 PF00873 AcrB/AcrD/AcrF family N8D55_22000 PF13533 Biotin-lipoyl like N8D55_22025 PF16655 PhoD-like phosphatase, N-terminal domain N8D55_22025 PF09423 PhoD-like phosphatase N8D55_22035 PF01648 4'-phosphopantetheinyl transferase superfamily N8D55_22040 PF04226 Transglycosylase associated protein N8D55_22050 PF03372 Endonuclease/Exonuclease/phosphatase family N8D55_22065 PF00480 ROK family N8D55_22085 PF09312 SurA N-terminal domain N8D55_22085 PF00639 PPIC-type PPIASE domain N8D55_22095 PF00474 Sodium:solute symporter family N8D55_22100 PF04341 Protein of unknown function, DUF485 N8D55_22110 PF16177 Acetyl-coenzyme A synthetase N-terminus N8D55_22110 PF13193 AMP-binding enzyme C-terminal domain N8D55_22110 PF00501 AMP-binding enzyme N8D55_22115 PF00196 Bacterial regulatory proteins, luxR family N8D55_22115 PF00072 Response regulator receiver domain N8D55_22155 PF01557 Fumarylacetoacetate (FAA) hydrolase family N8D55_22160 PF13378 Enolase C-terminal domain-like N8D55_22160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N8D55_22165 PF05336 L-rhamnose mutarotase N8D55_22175 PF01614 Bacterial transcriptional regulator N8D55_22175 PF09339 IclR helix-turn-helix domain N8D55_22190 PF02659 Putative manganese efflux pump N8D55_22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_22195 PF00512 His Kinase A (phospho-acceptor) domain N8D55_22215 PF01011 PQQ enzyme repeat N8D55_22215 PF13360 PQQ-like domain N8D55_22215 PF13570 PQQ-like domain N8D55_22240 PF04357 TamB, inner membrane protein subunit of TAM complex N8D55_22245 PF17243 POTRA domain TamA domain 1 N8D55_22245 PF01103 Surface antigen N8D55_22250 PF07715 TonB-dependent Receptor Plug Domain N8D55_22250 PF00593 TonB dependent receptor N8D55_22255 PF13181 Tetratricopeptide repeat N8D55_22260 PF05746 DALR anticodon binding domain N8D55_22260 PF02092 Glycyl-tRNA synthetase beta subunit N8D55_22295 PF00902 Sec-independent protein translocase protein (TatC) N8D55_22300 PF02416 mttA/Hcf106 family N8D55_22305 PF02416 mttA/Hcf106 family N8D55_22315 PF00762 Ferrochelatase N8D55_22320 PF12697 Alpha/beta hydrolase family N8D55_22330 PF04381 Putative exonuclease, RdgC N8D55_22335 PF01171 PP-loop family N8D55_22345 PF00356 Bacterial regulatory proteins, lacI family N8D55_22355 PF07477 Glycosyl hydrolase family 67 C-terminus N8D55_22355 PF03648 Glycosyl hydrolase family 67 N-terminus N8D55_22355 PF07488 Glycosyl hydrolase family 67 middle domain N8D55_22365 PF13378 Enolase C-terminal domain-like N8D55_22365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N8D55_22375 PF07691 PA14 domain N8D55_22375 PF14310 Fibronectin type III-like domain N8D55_22375 PF01915 Glycosyl hydrolase family 3 C-terminal domain N8D55_22375 PF00933 Glycosyl hydrolase family 3 N terminal domain N8D55_22380 PF08125 Mannitol dehydrogenase C-terminal domain N8D55_22380 PF01232 Mannitol dehydrogenase Rossmann domain N8D55_22410 PF02652 L-lactate permease N8D55_22430 PF08450 SMP-30/Gluconolactonase/LRE-like region N8D55_22435 PF00331 Glycosyl hydrolase family 10 N8D55_22445 PF02614 Glucuronate isomerase N8D55_22470 PF04616 Glycosyl hydrolases family 43 N8D55_22500 PF01553 Acyltransferase N8D55_22510 PF00356 Bacterial regulatory proteins, lacI family N8D55_22525 PF04820 Tryptophan halogenase N8D55_22530 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N8D55_22535 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) N8D55_22555 PF13302 Acetyltransferase (GNAT) domain N8D55_22565 PF00265 Thymidine kinase N8D55_22570 PF01590 GAF domain N8D55_22570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N8D55_22570 PF00512 His Kinase A (phospho-acceptor) domain N8D55_22570 PF08446 PAS fold N8D55_22570 PF00360 Phytochrome region N8D55_22575 PF04349 Periplasmic glucan biosynthesis protein, MdoG N8D55_22585 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain N8D55_22585 PF06827 Zinc finger found in FPG and IleRS N8D55_22585 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain N8D55_22625 PF11740 Plasmid replication region DNA-binding N-term N8D55_22680 PF18495 Antitoxin VbhA N8D55_22690 PF17841 BID domain of Bartonella effector protein (Bep) N8D55_22690 PF02661 Fic/DOC family N8D55_22705 PF03230 Antirestriction protein N8D55_22755 PF08751 TrwC relaxase N8D55_22755 PF18340 DNA relaxase TraI 2B/2B-like domain N8D55_22755 PF07057 DNA helicase TraI N8D55_22755 PF18272 single-stranded DNA binding TraI N-terminal subdomain N8D55_22765 PF07057 DNA helicase TraI N8D55_22765 PF08751 TrwC relaxase N8D55_22765 PF18340 DNA relaxase TraI 2B/2B-like domain N8D55_22765 PF18272 single-stranded DNA binding TraI N-terminal subdomain N8D55_22800 PF02796 Helix-turn-helix domain of resolvase N8D55_22800 PF00239 Resolvase, N terminal domain N8D55_22825 PF00376 MerR family regulatory protein N8D55_22825 PF09278 MerR, DNA binding N8D55_22875 PF03389 MobA/MobL family N8D55_22940 PF09722 Protein of unknown function (DUF2384) N8D55_22940 PF01936 NYN domain N8D55_22960 PF02810 SEC-C motif N8D55_22960 PF07516 SecA Wing and Scaffold domain N8D55_22960 PF01043 SecA preprotein cross-linking domain N8D55_22960 PF07517 SecA DEAD-like domain N8D55_22970 PF13175 AAA ATPase domain N8D55_22995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_22995 PF00529 HlyD membrane-fusion protein of T1SS N8D55_23020 PF09278 MerR, DNA binding N8D55_23020 PF00376 MerR family regulatory protein N8D55_23135 PF01936 NYN domain N8D55_23135 PF09722 Protein of unknown function (DUF2384) N8D55_23155 PF02810 SEC-C motif N8D55_23155 PF07517 SecA DEAD-like domain N8D55_23155 PF01043 SecA preprotein cross-linking domain N8D55_23155 PF07516 SecA Wing and Scaffold domain N8D55_23165 PF13175 AAA ATPase domain N8D55_23185 PF00873 AcrB/AcrD/AcrF family N8D55_23190 PF00529 HlyD membrane-fusion protein of T1SS N8D55_23190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N8D55_23215 PF04610 TrbL/VirB6 plasmid conjugal transfer protein N8D55_23240 PF03743 Bacterial conjugation TrbI-like protein N8D55_23260 PF01751 Toprim domain N8D55_23260 PF01131 DNA topoisomerase N8D55_23370 PF02796 Helix-turn-helix domain of resolvase N8D55_23370 PF00239 Resolvase, N terminal domain N8D55_23435 PF02534 Type IV secretory system Conjugative DNA transfer N8D55_23475 PF00437 Type II/IV secretion system protein N8D55_23490 PF03135 CagE, TrbE, VirB family, component of type IV transporter system