locus-tag class description LNP58_00025 PF17149 Periplasmic sensor domain found in signal transduction proteins LNP58_00025 PF00672 HAMP domain LNP58_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_00025 PF00512 His Kinase A (phospho-acceptor) domain LNP58_00025 PF01627 Hpt domain LNP58_00025 PF00072 Response regulator receiver domain LNP58_00030 PF17149 Periplasmic sensor domain found in signal transduction proteins LNP58_00030 PF00672 HAMP domain LNP58_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_00030 PF00512 His Kinase A (phospho-acceptor) domain LNP58_00030 PF01627 Hpt domain LNP58_00030 PF00072 Response regulator receiver domain LNP58_00035 PF00072 Response regulator receiver domain LNP58_00035 PF01627 Hpt domain LNP58_00035 PF00512 His Kinase A (phospho-acceptor) domain LNP58_00035 PF00672 HAMP domain LNP58_00035 PF17149 Periplasmic sensor domain found in signal transduction proteins LNP58_00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_00040 PF04264 YceI-like domain LNP58_00050 PF04264 YceI-like domain LNP58_00065 PF03313 Serine dehydratase alpha chain LNP58_00065 PF03315 Serine dehydratase beta chain LNP58_00075 PF01053 Cys/Met metabolism PLP-dependent enzyme LNP58_00080 PF00561 alpha/beta hydrolase fold LNP58_00085 PF01476 LysM domain LNP58_00085 PF08525 Opacity-associated protein A N-terminal motif LNP58_00085 PF01551 Peptidase family M23 LNP58_00090 PF00009 Elongation factor Tu GTP binding domain LNP58_00090 PF16658 Class II release factor RF3, C-terminal domain LNP58_00095 PF03006 Haemolysin-III related LNP58_00120 PF00535 Glycosyl transferase family 2 LNP58_00125 PF00912 Transglycosylase LNP58_00130 PF01430 Hsp33 protein LNP58_00140 PF07715 TonB-dependent Receptor Plug Domain LNP58_00140 PF00593 TonB dependent receptor LNP58_00145 PF00440 Bacterial regulatory proteins, tetR family LNP58_00155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNP58_00155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNP58_00155 PF09317 Domain of unknown function (DUF1974) LNP58_00190 PF01597 Glycine cleavage H-protein LNP58_00195 PF01571 Aminomethyltransferase folate-binding domain LNP58_00195 PF08669 Glycine cleavage T-protein C-terminal barrel domain LNP58_00205 PF01145 SPFH domain / Band 7 family LNP58_00205 PF16200 C-terminal region of band_7 LNP58_00220 PF03819 MazG nucleotide pyrophosphohydrolase domain LNP58_00225 PF00459 Inositol monophosphatase family LNP58_00230 PF00293 NUDIX domain LNP58_00235 PF00202 Aminotransferase class-III LNP58_00240 PF04452 RNA methyltransferase LNP58_00245 PF02685 Glucokinase LNP58_00260 PF00704 Glycosyl hydrolases family 18 LNP58_00260 PF01476 LysM domain LNP58_00270 PF00728 Glycosyl hydrolase family 20, catalytic domain LNP58_00270 PF02838 Glycosyl hydrolase family 20, domain 2 LNP58_00270 PF07691 PA14 domain LNP58_00280 PF14310 Fibronectin type III-like domain LNP58_00280 PF00933 Glycosyl hydrolase family 3 N terminal domain LNP58_00280 PF01915 Glycosyl hydrolase family 3 C-terminal domain LNP58_00280 PF07691 PA14 domain LNP58_00285 PF03412 Peptidase C39 family LNP58_00285 PF00005 ABC transporter LNP58_00285 PF00664 ABC transporter transmembrane region LNP58_00360 PF17678 Glycosyl hydrolase family 92 N-terminal domain LNP58_00360 PF07971 Glycosyl hydrolase family 92 LNP58_00370 PF01301 Glycosyl hydrolases family 35 LNP58_00410 PF03932 CutC family LNP58_00415 PF01112 Asparaginase LNP58_00425 PF12450 von Willebrand factor LNP58_00425 PF12034 Domain of unknown function (DUF3520) LNP58_00425 PF00092 von Willebrand factor type A domain LNP58_00430 PF12450 von Willebrand factor LNP58_00430 PF12034 Domain of unknown function (DUF3520) LNP58_00430 PF00092 von Willebrand factor type A domain LNP58_00440 PF13302 Acetyltransferase (GNAT) domain LNP58_00455 PF00072 Response regulator receiver domain LNP58_00455 PF01627 Hpt domain LNP58_00455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_00455 PF02895 Signal transducing histidine kinase, homodimeric domain LNP58_00455 PF01584 CheW-like domain LNP58_00460 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LNP58_00460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_00465 PF01584 CheW-like domain LNP58_00470 PF00072 Response regulator receiver domain LNP58_00475 PF00072 Response regulator receiver domain LNP58_00480 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LNP58_00480 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LNP58_00490 PF03747 ADP-ribosylglycohydrolase LNP58_00495 PF00814 Glycoprotease family LNP58_00500 PF04851 Type III restriction enzyme, res subunit LNP58_00500 PF13307 Helicase C-terminal domain LNP58_00510 PF14814 Bifunctional transglycosylase second domain LNP58_00510 PF00905 Penicillin binding protein transpeptidase domain LNP58_00510 PF00912 Transglycosylase LNP58_00515 PF00535 Glycosyl transferase family 2 LNP58_00525 PF04607 Region found in RelA / SpoT proteins LNP58_00525 PF02824 TGS domain LNP58_00525 PF13291 ACT domain LNP58_00530 PF08042 PqqA family LNP58_00535 PF12706 Beta-lactamase superfamily domain LNP58_00540 PF03070 TENA/THI-4/PQQC family LNP58_00545 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LNP58_00550 PF04055 Radical SAM superfamily LNP58_00550 PF13186 Iron-sulfur cluster-binding domain LNP58_00580 PF00270 DEAD/DEAH box helicase LNP58_00580 PF11898 Domain of unknown function (DUF3418) LNP58_00580 PF04408 Helicase associated domain (HA2) LNP58_00580 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LNP58_00580 PF00271 Helicase conserved C-terminal domain LNP58_00585 PF00210 Ferritin-like domain LNP58_00590 PF00270 DEAD/DEAH box helicase LNP58_00590 PF00271 Helicase conserved C-terminal domain LNP58_00590 PF09382 RQC domain LNP58_00590 PF16124 RecQ zinc-binding LNP58_00590 PF00570 HRDC domain LNP58_00615 PF11798 IMS family HHH motif LNP58_00615 PF11799 impB/mucB/samB family C-terminal domain LNP58_00615 PF00817 impB/mucB/samB family LNP58_00615 PF13438 Domain of unknown function (DUF4113) LNP58_00645 PF01555 DNA methylase LNP58_00705 PF00182 Chitinase class I LNP58_00735 PF05598 Transposase domain (DUF772) LNP58_00735 PF01609 Transposase DDE domain LNP58_00895 PF06508 Queuosine biosynthesis protein QueC LNP58_00905 PF05598 Transposase domain (DUF772) LNP58_00930 PF01810 LysE type translocator LNP58_00950 PF00849 RNA pseudouridylate synthase LNP58_00950 PF01479 S4 domain LNP58_00955 PF04055 Radical SAM superfamily LNP58_00965 PF00691 OmpA family LNP58_00970 PF07676 WD40-like Beta Propeller Repeat LNP58_00970 PF04052 TolB amino-terminal domain LNP58_00980 PF02472 Biopolymer transport protein ExbD/TolR LNP58_00985 PF01618 MotA/TolQ/ExbB proton channel family LNP58_00990 PF03061 Thioesterase superfamily LNP58_00995 PF05491 RuvB C-terminal winged helix domain LNP58_00995 PF05496 Holliday junction DNA helicase RuvB P-loop domain LNP58_00995 PF17864 RuvB AAA lid domain LNP58_01000 PF02705 K+ potassium transporter LNP58_01005 PF07499 RuvA, C-terminal domain LNP58_01005 PF01330 RuvA N terminal domain LNP58_01010 PF02075 Crossover junction endodeoxyribonuclease RuvC LNP58_01015 PF01709 Transcriptional regulator LNP58_01030 PF02938 GAD domain LNP58_01030 PF00152 tRNA synthetases class II (D, K and N) LNP58_01030 PF01336 OB-fold nucleic acid binding domain LNP58_01065 PF18073 Rubredoxin metal binding domain LNP58_01080 PF05192 MutS domain III LNP58_01080 PF01624 MutS domain I LNP58_01080 PF05188 MutS domain II LNP58_01080 PF05190 MutS family domain IV LNP58_01080 PF00488 MutS domain V LNP58_01110 PF14220 Domain of unknown function (DUF4329) LNP58_01110 PF03527 RHS protein LNP58_01110 PF05593 RHS Repeat LNP58_01120 PF06715 Gp5 C-terminal repeat (3 copies) LNP58_01120 PF04717 Type VI secretion system, phage-baseplate injector LNP58_01130 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LNP58_01135 PF00510 Cytochrome c oxidase subunit III LNP58_01140 PF00115 Cytochrome C and Quinol oxidase polypeptide I LNP58_01145 PF06481 COX Aromatic Rich Motif LNP58_01145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LNP58_01155 PF02401 LytB protein LNP58_01160 PF01252 Signal peptidase (SPase) II LNP58_01165 PF08264 Anticodon-binding domain of tRNA LNP58_01165 PF00133 tRNA synthetases class I (I, L, M and V) LNP58_01165 PF06827 Zinc finger found in FPG and IleRS LNP58_01170 PF06574 FAD synthetase LNP58_01170 PF01687 Riboflavin kinase LNP58_01175 PF03023 Lipid II flippase MurJ LNP58_01180 PF01649 Ribosomal protein S20 LNP58_01185 PF01018 GTP1/OBG LNP58_01185 PF01926 50S ribosome-binding GTPase LNP58_01190 PF01016 Ribosomal L27 protein LNP58_01195 PF00829 Ribosomal prokaryotic L21 protein LNP58_01200 PF17755 UvrA DNA-binding domain LNP58_01200 PF17760 UvrA interaction domain LNP58_01200 PF00005 ABC transporter LNP58_01215 PF00378 Enoyl-CoA hydratase/isomerase LNP58_01250 PF04377 Arginine-tRNA-protein transferase, C terminus LNP58_01250 PF04376 Arginine-tRNA-protein transferase, N terminus LNP58_01280 PF07715 TonB-dependent Receptor Plug Domain LNP58_01280 PF00593 TonB dependent receptor LNP58_01290 PF02358 Trehalose-phosphatase LNP58_01295 PF00723 Glycosyl hydrolases family 15 LNP58_01300 PF00982 Glycosyltransferase family 20 LNP58_01315 PF02578 Multi-copper polyphenol oxidoreductase laccase LNP58_01320 PF00849 RNA pseudouridylate synthase LNP58_01325 PF13525 Outer membrane lipoprotein LNP58_01330 PF02540 NAD synthase LNP58_01330 PF00795 Carbon-nitrogen hydrolase LNP58_01345 PF02629 CoA binding domain LNP58_01345 PF00549 CoA-ligase LNP58_01350 PF08442 ATP-grasp domain LNP58_01350 PF00549 CoA-ligase LNP58_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_01355 PF00512 His Kinase A (phospho-acceptor) domain LNP58_01360 PF00158 Sigma-54 interaction domain LNP58_01360 PF02954 Bacterial regulatory protein, Fis family LNP58_01360 PF00072 Response regulator receiver domain LNP58_01375 PF02661 Fic/DOC family LNP58_01375 PF18543 Intracellular delivery domain LNP58_01380 PF00437 Type II/IV secretion system protein LNP58_01380 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNP58_01395 PF08019 Phosphoethanolamine transferase EptA/EptB LNP58_01395 PF00884 Sulfatase LNP58_01400 PF00114 Pilin (bacterial filament) LNP58_01400 PF07963 Prokaryotic N-terminal methylation motif LNP58_01405 PF00482 Type II secretion system (T2SS), protein F LNP58_01410 PF06750 Bacterial Peptidase A24 N-terminal domain LNP58_01410 PF01478 Type IV leader peptidase family LNP58_01415 PF01121 Dephospho-CoA kinase LNP58_01445 PF01609 Transposase DDE domain LNP58_01445 PF05598 Transposase domain (DUF772) LNP58_01450 PF01609 Transposase DDE domain LNP58_01450 PF05598 Transposase domain (DUF772) LNP58_01475 PF01609 Transposase DDE domain LNP58_01475 PF05598 Transposase domain (DUF772) LNP58_01505 PF00664 ABC transporter transmembrane region LNP58_01505 PF00005 ABC transporter LNP58_01515 PF00873 AcrB/AcrD/AcrF family LNP58_01530 PF02321 Outer membrane efflux protein LNP58_01535 PF00072 Response regulator receiver domain LNP58_01535 PF00486 Transcriptional regulatory protein, C terminal LNP58_01540 PF00672 HAMP domain LNP58_01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_01540 PF00512 His Kinase A (phospho-acceptor) domain LNP58_01545 PF00999 Sodium/hydrogen exchanger family LNP58_01550 PF00144 Beta-lactamase LNP58_01555 PF03737 Aldolase/RraA LNP58_01575 PF00849 RNA pseudouridylate synthase LNP58_01575 PF01479 S4 domain LNP58_01580 PF00563 EAL domain LNP58_01580 PF00990 Diguanylate cyclase, GGDEF domain LNP58_01580 PF08448 PAS fold LNP58_01585 PF03880 DbpA RNA binding domain LNP58_01585 PF00270 DEAD/DEAH box helicase LNP58_01585 PF00271 Helicase conserved C-terminal domain LNP58_01630 PF12833 Helix-turn-helix domain LNP58_01630 PF00730 HhH-GPD superfamily base excision DNA repair protein LNP58_01630 PF02805 Metal binding domain of Ada LNP58_01630 PF06029 AlkA N-terminal domain LNP58_01635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LNP58_01635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LNP58_01650 PF00654 Voltage gated chloride channel LNP58_01655 PF00107 Zinc-binding dehydrogenase LNP58_01655 PF08240 Alcohol dehydrogenase GroES-like domain LNP58_01690 PF05736 OprF membrane domain LNP58_01690 PF00691 OmpA family LNP58_01700 PF00875 DNA photolyase LNP58_01700 PF03441 FAD binding domain of DNA photolyase LNP58_01705 PF00772 DnaB-like helicase N terminal domain LNP58_01705 PF03796 DnaB-like helicase C terminal domain LNP58_01710 PF03358 NADPH-dependent FMN reductase LNP58_01715 PF00733 Asparagine synthase LNP58_01715 PF13537 Glutamine amidotransferase domain LNP58_01720 PF13417 Glutathione S-transferase, N-terminal domain LNP58_01730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNP58_01730 PF02770 Acyl-CoA dehydrogenase, middle domain LNP58_01730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNP58_01745 PF01026 TatD related DNase LNP58_01750 PF00899 ThiF family LNP58_01765 PF00313 'Cold-shock' DNA-binding domain LNP58_01810 PF01475 Ferric uptake regulator family LNP58_01815 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNP58_01910 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LNP58_01920 PF02559 CarD-like/TRCF domain LNP58_01920 PF00270 DEAD/DEAH box helicase LNP58_01920 PF00271 Helicase conserved C-terminal domain LNP58_01920 PF03461 TRCF domain LNP58_01920 PF17757 UvrB interaction domain LNP58_01935 PF01584 CheW-like domain LNP58_01935 PF09078 CheY binding LNP58_01935 PF02895 Signal transducing histidine kinase, homodimeric domain LNP58_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_01935 PF01627 Hpt domain LNP58_01940 PF00672 HAMP domain LNP58_01940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_01940 PF02203 Tar ligand binding domain homologue LNP58_01945 PF01584 CheW-like domain LNP58_01950 PF00990 Diguanylate cyclase, GGDEF domain LNP58_01950 PF00563 EAL domain LNP58_01950 PF13426 PAS domain LNP58_01955 PF01739 CheR methyltransferase, SAM binding domain LNP58_01955 PF03705 CheR methyltransferase, all-alpha domain LNP58_01960 PF01339 CheB methylesterase LNP58_01960 PF00072 Response regulator receiver domain LNP58_01970 PF01431 Peptidase family M13 LNP58_01970 PF05649 Peptidase family M13 LNP58_01985 PF00300 Histidine phosphatase superfamily (branch 1) LNP58_01990 PF04493 Endonuclease V LNP58_02000 PF02678 Pirin LNP58_02000 PF05726 Pirin C-terminal cupin domain LNP58_02050 PF05598 Transposase domain (DUF772) LNP58_02050 PF01609 Transposase DDE domain LNP58_02065 PF04717 Type VI secretion system, phage-baseplate injector LNP58_02065 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_02065 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_02095 PF05598 Transposase domain (DUF772) LNP58_02095 PF01609 Transposase DDE domain LNP58_02100 PF04717 Type VI secretion system, phage-baseplate injector LNP58_02100 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_02100 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_02120 PF06715 Gp5 C-terminal repeat (3 copies) LNP58_02120 PF04717 Type VI secretion system, phage-baseplate injector LNP58_02130 PF05726 Pirin C-terminal cupin domain LNP58_02130 PF02678 Pirin LNP58_02135 PF02554 Carbon starvation protein CstA LNP58_02135 PF13722 5TM C-terminal transporter carbon starvation CstA LNP58_02140 PF04328 Selenoprotein, putative LNP58_02175 PF00563 EAL domain LNP58_02175 PF00990 Diguanylate cyclase, GGDEF domain LNP58_02175 PF00360 Phytochrome region LNP58_02175 PF01590 GAF domain LNP58_02180 PF00436 Single-strand binding protein family LNP58_02185 PF00348 Polyprenyl synthetase LNP58_02195 PF08245 Mur ligase middle domain LNP58_02210 PF00696 Amino acid kinase family LNP58_02210 PF01842 ACT domain LNP58_02220 PF02567 Phenazine biosynthesis-like protein LNP58_02230 PF02566 OsmC-like protein LNP58_02240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNP58_02240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNP58_02245 PF03652 Holliday junction resolvase LNP58_02250 PF02622 Uncharacterized ACR, COG1678 LNP58_02260 PF03352 Methyladenine glycosylase LNP58_02260 PF00117 Glutamine amidotransferase class-I LNP58_02260 PF13673 Acetyltransferase (GNAT) domain LNP58_02260 PF13302 Acetyltransferase (GNAT) domain LNP58_02260 PF00958 GMP synthase C terminal domain LNP58_02280 PF00437 Type II/IV secretion system protein LNP58_02285 PF00437 Type II/IV secretion system protein LNP58_02290 PF01168 Alanine racemase, N-terminal domain LNP58_02295 PF03807 NADP oxidoreductase coenzyme F420-dependent LNP58_02295 PF14748 Pyrroline-5-carboxylate reductase dimerisation LNP58_02350 PF02082 Transcriptional regulator LNP58_02355 PF01458 Uncharacterized protein family (UPF0051) LNP58_02360 PF00005 ABC transporter LNP58_02365 PF01458 Uncharacterized protein family (UPF0051) LNP58_02370 PF00266 Aminotransferase class-V LNP58_02380 PF00355 Rieske [2Fe-2S] domain LNP58_02415 PF00266 Aminotransferase class-V LNP58_02420 PF01053 Cys/Met metabolism PLP-dependent enzyme LNP58_02430 PF07722 Peptidase C26 LNP58_02435 PF01810 LysE type translocator LNP58_02440 PF04204 Homoserine O-succinyltransferase LNP58_02445 PF00120 Glutamine synthetase, catalytic domain LNP58_02450 PF00872 Transposase, Mutator family LNP58_02475 PF00183 Hsp90 protein LNP58_02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_02480 PF12833 Helix-turn-helix domain LNP58_02510 PF07859 alpha/beta hydrolase fold LNP58_02510 PF13472 GDSL-like Lipase/Acylhydrolase family LNP58_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_02520 PF03466 LysR substrate binding domain LNP58_02535 PF00005 ABC transporter LNP58_02535 PF12848 ABC transporter LNP58_02540 PF07715 TonB-dependent Receptor Plug Domain LNP58_02540 PF00593 TonB dependent receptor LNP58_02555 PF00593 TonB dependent receptor LNP58_02555 PF07715 TonB-dependent Receptor Plug Domain LNP58_02560 PF07715 TonB-dependent Receptor Plug Domain LNP58_02560 PF00593 TonB dependent receptor LNP58_02570 PF00999 Sodium/hydrogen exchanger family LNP58_02570 PF02254 TrkA-N domain LNP58_02585 PF00593 TonB dependent receptor LNP58_02585 PF07660 Secretin and TonB N terminus short domain LNP58_02585 PF07715 TonB-dependent Receptor Plug Domain LNP58_02595 PF06276 Ferric iron reductase FhuF-like transporter LNP58_02595 PF04183 IucA / IucC family LNP58_02600 PF07690 Major Facilitator Superfamily LNP58_02605 PF06276 Ferric iron reductase FhuF-like transporter LNP58_02605 PF04183 IucA / IucC family LNP58_02610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LNP58_02610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNP58_02620 PF02654 Cobalamin-5-phosphate synthase LNP58_02630 PF02277 Phosphoribosyltransferase LNP58_02635 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LNP58_02650 PF12557 Cob(I)alamin adenosyltransferase N terminal LNP58_02650 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LNP58_02675 PF00593 TonB dependent receptor LNP58_02675 PF07715 TonB-dependent Receptor Plug Domain LNP58_02710 PF17871 AAA lid domain LNP58_02710 PF02861 Clp amino terminal domain, pathogenicity island component LNP58_02710 PF10431 C-terminal, D2-small domain, of ClpB protein LNP58_02710 PF07724 AAA domain (Cdc48 subfamily) LNP58_02710 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_02715 PF01541 GIY-YIG catalytic domain LNP58_02740 PF01479 S4 domain LNP58_02745 PF01554 MatE LNP58_02755 PF01245 Ribosomal protein L19 LNP58_02760 PF01746 tRNA (Guanine-1)-methyltransferase LNP58_02765 PF05239 PRC-barrel domain LNP58_02765 PF01782 RimM N-terminal domain LNP58_02770 PF00886 Ribosomal protein S16 LNP58_02780 PF03060 Nitronate monooxygenase LNP58_02790 PF02978 Signal peptide binding domain LNP58_02790 PF02881 SRP54-type protein, helical bundle domain LNP58_02790 PF00448 SRP54-type protein, GTPase domain LNP58_02800 PF01578 Cytochrome C assembly protein LNP58_02805 PF01263 Aldose 1-epimerase LNP58_02810 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LNP58_02845 PF01546 Peptidase family M20/M25/M40 LNP58_02845 PF07687 Peptidase dimerisation domain LNP58_02860 PF01636 Phosphotransferase enzyme family LNP58_02865 PF00483 Nucleotidyl transferase LNP58_02870 PF00308 Bacterial dnaA protein LNP58_02875 PF01594 AI-2E family transporter LNP58_02885 PF02769 AIR synthase related protein, C-terminal domain LNP58_02885 PF00586 AIR synthase related protein, N-terminal domain LNP58_02900 PF00551 Formyl transferase LNP58_02925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNP58_02930 PF01722 BolA-like protein LNP58_02935 PF00571 CBS domain LNP58_02935 PF01380 SIS domain LNP58_02950 PF03968 OstA-like protein LNP58_02955 PF00005 ABC transporter LNP58_02960 PF04963 Sigma-54 factor, core binding domain LNP58_02960 PF00309 Sigma-54 factor, Activator interacting domain (AID) LNP58_02960 PF04552 Sigma-54, DNA binding domain LNP58_02965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LNP58_02970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNP58_02975 PF07475 HPr Serine kinase C-terminal domain LNP58_02975 PF02603 HPr Serine kinase N terminus LNP58_02980 PF03668 P-loop ATPase protein family LNP58_02990 PF00381 PTS HPr component phosphorylation site LNP58_02995 PF05524 PEP-utilising enzyme, N-terminal LNP58_02995 PF00391 PEP-utilising enzyme, mobile domain LNP58_02995 PF02896 PEP-utilising enzyme, TIM barrel domain LNP58_03000 PF01769 Divalent cation transporter LNP58_03000 PF03448 MgtE intracellular N domain LNP58_03000 PF00571 CBS domain LNP58_03005 PF00756 Putative esterase LNP58_03010 PF02322 Cytochrome bd terminal oxidase subunit II LNP58_03015 PF01654 Cytochrome bd terminal oxidase subunit I LNP58_03030 PF00324 Amino acid permease LNP58_03040 PF00561 alpha/beta hydrolase fold LNP58_03045 PF00196 Bacterial regulatory proteins, luxR family LNP58_03050 PF00324 Amino acid permease LNP58_03065 PF12706 Beta-lactamase superfamily domain LNP58_03070 PF04820 Tryptophan halogenase LNP58_03095 PF09278 MerR, DNA binding LNP58_03095 PF00376 MerR family regulatory protein LNP58_03110 PF03738 Glutathionylspermidine synthase preATP-grasp LNP58_03135 PF04012 PspA/IM30 family LNP58_03145 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LNP58_03145 PF01243 Pyridoxamine 5'-phosphate oxidase LNP58_03150 PF01202 Shikimate kinase LNP58_03155 PF01761 3-dehydroquinate synthase LNP58_03165 PF01208 Uroporphyrinogen decarboxylase (URO-D) LNP58_03180 PF03377 TAL effector repeat LNP58_03195 PF03377 TAL effector repeat LNP58_03210 PF03377 TAL effector repeat LNP58_03225 PF03377 TAL effector repeat LNP58_03245 PF00202 Aminotransferase class-III LNP58_03255 PF00127 Copper binding proteins, plastocyanin/azurin family LNP58_03270 PF00034 Cytochrome c LNP58_03270 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LNP58_03275 PF01593 Flavin containing amine oxidoreductase LNP58_03290 PF00202 Aminotransferase class-III LNP58_03295 PF00027 Cyclic nucleotide-binding domain LNP58_03295 PF00520 Ion transport protein LNP58_03330 PF08443 RimK-like ATP-grasp domain LNP58_03330 PF18030 RimK PreATP-grasp domain LNP58_03340 PF00072 Response regulator receiver domain LNP58_03340 PF00486 Transcriptional regulatory protein, C terminal LNP58_03345 PF00672 HAMP domain LNP58_03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_03345 PF00512 His Kinase A (phospho-acceptor) domain LNP58_03365 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LNP58_03365 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LNP58_03395 PF04273 Putative phosphatase (DUF442) LNP58_03395 PF00753 Metallo-beta-lactamase superfamily LNP58_03405 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_03410 PF00005 ABC transporter LNP58_03410 PF03459 TOBE domain LNP58_03430 PF08521 Two-component sensor kinase N-terminal LNP58_03430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_03430 PF00512 His Kinase A (phospho-acceptor) domain LNP58_03435 PF00072 Response regulator receiver domain LNP58_03435 PF00486 Transcriptional regulatory protein, C terminal LNP58_03455 PF00501 AMP-binding enzyme LNP58_03480 PF01476 LysM domain LNP58_03480 PF03734 L,D-transpeptidase catalytic domain LNP58_03485 PF01551 Peptidase family M23 LNP58_03485 PF04225 Opacity-associated protein A LysM-like domain LNP58_03495 PF02779 Transketolase, pyrimidine binding domain LNP58_03495 PF02780 Transketolase, C-terminal domain LNP58_03495 PF00456 Transketolase, thiamine diphosphate binding domain LNP58_03500 PF00375 Sodium:dicarboxylate symporter family LNP58_03520 PF00092 von Willebrand factor type A domain LNP58_03520 PF07584 Aerotolerance regulator N-terminal LNP58_03540 PF17863 AAA lid domain LNP58_03540 PF07726 ATPase family associated with various cellular activities (AAA) LNP58_03565 PF07660 Secretin and TonB N terminus short domain LNP58_03565 PF00263 Bacterial type II and III secretion system protein LNP58_03565 PF11741 AMIN domain LNP58_03565 PF03958 Bacterial type II/III secretion system short domain LNP58_03570 PF04351 Pilus assembly protein, PilP LNP58_03575 PF04350 Pilus assembly protein, PilO LNP58_03580 PF05137 Fimbrial assembly protein (PilN) LNP58_03585 PF11104 Type IV pilus assembly protein PilM; LNP58_03590 PF00912 Transglycosylase LNP58_03590 PF17092 Penicillin-binding protein OB-like domain LNP58_03590 PF00905 Penicillin binding protein transpeptidase domain LNP58_03605 PF00285 Citrate synthase, C-terminal domain LNP58_03610 PF01197 Ribosomal protein L31 LNP58_03615 PF01156 Inosine-uridine preferring nucleoside hydrolase LNP58_03620 PF17191 RecG wedge domain LNP58_03620 PF00270 DEAD/DEAH box helicase LNP58_03620 PF00271 Helicase conserved C-terminal domain LNP58_03625 PF01042 Endoribonuclease L-PSP LNP58_03630 PF13291 ACT domain LNP58_03630 PF04607 Region found in RelA / SpoT proteins LNP58_03630 PF02824 TGS domain LNP58_03635 PF01192 RNA polymerase Rpb6 LNP58_03650 PF00625 Guanylate kinase LNP58_03655 PF03755 YicC-like family, N-terminal region LNP58_03655 PF08340 Domain of unknown function (DUF1732) LNP58_03660 PF01138 3' exoribonuclease family, domain 1 LNP58_03660 PF03725 3' exoribonuclease family, domain 2 LNP58_03670 PF01725 Ham1 family LNP58_03675 PF06969 HemN C-terminal domain LNP58_03675 PF04055 Radical SAM superfamily LNP58_03690 PF00557 Metallopeptidase family M24 LNP58_03715 PF00557 Metallopeptidase family M24 LNP58_03715 PF05195 Aminopeptidase P, N-terminal domain LNP58_03720 PF03695 Uncharacterised protein family (UPF0149) LNP58_03730 PF05164 Cell division protein ZapA LNP58_03740 PF01812 5-formyltetrahydrofolate cyclo-ligase family LNP58_03750 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LNP58_03760 PF13369 Transglutaminase-like superfamily LNP58_03765 PF00301 Rubredoxin LNP58_03770 PF02581 Thiamine monophosphate synthase LNP58_03800 PF01515 Phosphate acetyl/butaryl transferase LNP58_03800 PF00390 Malic enzyme, N-terminal domain LNP58_03800 PF03949 Malic enzyme, NAD binding domain LNP58_03805 PF00375 Sodium:dicarboxylate symporter family LNP58_03820 PF00512 His Kinase A (phospho-acceptor) domain LNP58_03820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_03825 PF07690 Major Facilitator Superfamily LNP58_03835 PF03466 LysR substrate binding domain LNP58_03835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_03855 PF00196 Bacterial regulatory proteins, luxR family LNP58_03855 PF00072 Response regulator receiver domain LNP58_03865 PF08521 Two-component sensor kinase N-terminal LNP58_03865 PF00512 His Kinase A (phospho-acceptor) domain LNP58_03865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_03870 PF00072 Response regulator receiver domain LNP58_03870 PF00486 Transcriptional regulatory protein, C terminal LNP58_03880 PF03600 Citrate transporter LNP58_03885 PF00106 short chain dehydrogenase LNP58_03890 PF00356 Bacterial regulatory proteins, lacI family LNP58_03910 PF00128 Alpha amylase, catalytic domain LNP58_03925 PF03193 RsgA GTPase LNP58_03930 PF00155 Aminotransferase class I and II LNP58_03950 PF01522 Polysaccharide deacetylase LNP58_03955 PF00462 Glutaredoxin LNP58_03980 PF01609 Transposase DDE domain LNP58_03980 PF05598 Transposase domain (DUF772) LNP58_04025 PF01327 Polypeptide deformylase LNP58_04045 PF07726 ATPase family associated with various cellular activities (AAA) LNP58_04045 PF17863 AAA lid domain LNP58_04055 PF11992 Domain of unknown function (DUF3488) LNP58_04055 PF13559 Domain of unknown function (DUF4129) LNP58_04055 PF01841 Transglutaminase-like superfamily LNP58_04065 PF01230 HIT domain LNP58_04070 PF02132 RecR protein LNP58_04070 PF13662 Toprim domain LNP58_04075 PF02575 YbaB/EbfC DNA-binding family LNP58_04080 PF12169 DNA polymerase III subunits gamma and tau domain III LNP58_04080 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LNP58_04080 PF12170 DNA polymerase III tau subunit V interacting with alpha LNP58_04095 PF02391 MoaE protein LNP58_04100 PF02597 ThiS family LNP58_04105 PF01967 MoaC family LNP58_04115 PF06463 Molybdenum Cofactor Synthesis C LNP58_04115 PF04055 Radical SAM superfamily LNP58_04120 PF00753 Metallo-beta-lactamase superfamily LNP58_04120 PF12706 Beta-lactamase superfamily domain LNP58_04130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LNP58_04140 PF13356 Arm DNA-binding domain LNP58_04140 PF00589 Phage integrase family LNP58_04175 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_04175 PF04717 Type VI secretion system, phage-baseplate injector LNP58_04175 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_04210 PF00929 Exonuclease LNP58_04215 PF00075 RNase H LNP58_04225 PF16123 Hydroxyacylglutathione hydrolase C-terminus LNP58_04225 PF00753 Metallo-beta-lactamase superfamily LNP58_04230 PF05257 CHAP domain LNP58_04230 PF01476 LysM domain LNP58_04255 PF00216 Bacterial DNA-binding protein LNP58_04260 PF02190 ATP-dependent protease La (LON) substrate-binding domain LNP58_04260 PF05362 Lon protease (S16) C-terminal proteolytic domain LNP58_04260 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_04265 PF07724 AAA domain (Cdc48 subfamily) LNP58_04265 PF10431 C-terminal, D2-small domain, of ClpB protein LNP58_04265 PF06689 ClpX C4-type zinc finger LNP58_04270 PF00574 Clp protease LNP58_04275 PF05698 Bacterial trigger factor protein (TF) C-terminus LNP58_04275 PF05697 Bacterial trigger factor protein (TF) LNP58_04285 PF05598 Transposase domain (DUF772) LNP58_04330 PF00180 Isocitrate/isopropylmalate dehydrogenase LNP58_04330 PF18324 Hypothetical protein TT1725 LNP58_04355 PF03009 Glycerophosphoryl diester phosphodiesterase family LNP58_04375 PF01609 Transposase DDE domain LNP58_04375 PF05598 Transposase domain (DUF772) LNP58_04460 PF05598 Transposase domain (DUF772) LNP58_04495 PF02600 Disulfide bond formation protein DsbB LNP58_04505 PF01474 Class-II DAHP synthetase family LNP58_04525 PF00679 Elongation factor G C-terminus LNP58_04525 PF00009 Elongation factor Tu GTP binding domain LNP58_04525 PF03144 Elongation factor Tu domain 2 LNP58_04530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LNP58_04535 PF00056 lactate/malate dehydrogenase, NAD binding domain LNP58_04535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LNP58_04540 PF00043 Glutathione S-transferase, C-terminal domain LNP58_04540 PF02798 Glutathione S-transferase, N-terminal domain LNP58_04555 PF01062 Bestrophin, RFP-TM, chloride channel LNP58_04565 PF01225 Mur ligase family, catalytic domain LNP58_04565 PF02875 Mur ligase family, glutamate ligase domain LNP58_04565 PF08245 Mur ligase middle domain LNP58_04575 PF00365 Phosphofructokinase LNP58_04595 PF03030 Inorganic H+ pyrophosphatase LNP58_04615 PF00719 Inorganic pyrophosphatase LNP58_04630 PF07715 TonB-dependent Receptor Plug Domain LNP58_04630 PF00593 TonB dependent receptor LNP58_04635 PF12833 Helix-turn-helix domain LNP58_04640 PF00486 Transcriptional regulatory protein, C terminal LNP58_04640 PF18500 CadC C-terminal domain 1 LNP58_04645 PF01964 Radical SAM ThiC family LNP58_04645 PF13667 ThiC-associated domain LNP58_04655 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LNP58_04655 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LNP58_04660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNP58_04660 PF00205 Thiamine pyrophosphate enzyme, central domain LNP58_04660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNP58_04670 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_04675 PF08502 LeuA allosteric (dimerisation) domain LNP58_04675 PF00682 HMGL-like LNP58_04680 PF00180 Isocitrate/isopropylmalate dehydrogenase LNP58_04690 PF00694 Aconitase C-terminal domain LNP58_04695 PF00330 Aconitase family (aconitate hydratase) LNP58_04700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_04720 PF02321 Outer membrane efflux protein LNP58_04725 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LNP58_04730 PF03279 Bacterial lipid A biosynthesis acyltransferase LNP58_04750 PF05598 Transposase domain (DUF772) LNP58_04750 PF01609 Transposase DDE domain LNP58_04770 PF05598 Transposase domain (DUF772) LNP58_04785 PF11838 ERAP1-like C-terminal domain LNP58_04785 PF01433 Peptidase family M1 domain LNP58_04790 PF00709 Adenylosuccinate synthetase LNP58_04800 PF01145 SPFH domain / Band 7 family LNP58_04805 PF01145 SPFH domain / Band 7 family LNP58_04805 PF12221 Bacterial membrane protein N terminal LNP58_04810 PF00072 Response regulator receiver domain LNP58_04815 PF01556 DnaJ C terminal domain LNP58_04815 PF00226 DnaJ domain LNP58_04825 PF08534 Redoxin LNP58_04835 PF13936 Helix-turn-helix domain LNP58_04835 PF00665 Integrase core domain LNP58_04865 PF01609 Transposase DDE domain LNP58_04865 PF05598 Transposase domain (DUF772) LNP58_04885 PF07715 TonB-dependent Receptor Plug Domain LNP58_04885 PF00593 TonB dependent receptor LNP58_04890 PF05598 Transposase domain (DUF772) LNP58_04890 PF01609 Transposase DDE domain LNP58_04895 PF04303 PrpF protein LNP58_04905 PF00694 Aconitase C-terminal domain LNP58_04905 PF00330 Aconitase family (aconitate hydratase) LNP58_04910 PF00285 Citrate synthase, C-terminal domain LNP58_04920 PF02954 Bacterial regulatory protein, Fis family LNP58_04920 PF06506 Propionate catabolism activator LNP58_04920 PF00158 Sigma-54 interaction domain LNP58_04950 PF09115 DNA polymerase III, delta subunit, C terminal LNP58_04955 PF02618 YceG-like family LNP58_04960 PF00425 chorismate binding enzyme LNP58_04960 PF04715 Anthranilate synthase component I, N terminal region LNP58_04965 PF02801 Beta-ketoacyl synthase, C-terminal domain LNP58_04965 PF00109 Beta-ketoacyl synthase, N-terminal domain LNP58_04970 PF00550 Phosphopantetheine attachment site LNP58_04980 PF00698 Acyl transferase domain LNP58_04990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNP58_04990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNP58_04995 PF01783 Ribosomal L32p protein family LNP58_05000 PF02620 Large ribosomal RNA subunit accumulation protein YceD LNP58_05005 PF02545 Maf-like protein LNP58_05020 PF09704 CRISPR-associated protein (Cas_Cas5) LNP58_05040 PF01867 CRISPR associated protein Cas1 LNP58_05045 PF09827 CRISPR associated protein Cas2 LNP58_05075 PF00593 TonB dependent receptor LNP58_05075 PF07715 TonB-dependent Receptor Plug Domain LNP58_05090 PF07702 UTRA domain LNP58_05090 PF00392 Bacterial regulatory proteins, gntR family LNP58_05105 PF00263 Bacterial type II and III secretion system protein LNP58_05105 PF03958 Bacterial type II/III secretion system short domain LNP58_05115 PF10741 Type II secretion system (T2SS), protein M subtype b LNP58_05120 PF05137 Fimbrial assembly protein (PilN) LNP58_05125 PF03934 Type II secretion system (T2SS), protein K LNP58_05135 PF07963 Prokaryotic N-terminal methylation motif LNP58_05140 PF12019 Type II transport protein GspH LNP58_05145 PF08334 Type II secretion system (T2SS), protein G LNP58_05150 PF00482 Type II secretion system (T2SS), protein F LNP58_05160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNP58_05160 PF00437 Type II/IV secretion system protein LNP58_05180 PF05662 Coiled stalk of trimeric autotransporter adhesin LNP58_05180 PF13018 Extended Signal Peptide of Type V secretion system LNP58_05180 PF03895 YadA-like membrane anchor domain LNP58_05180 PF05658 Head domain of trimeric autotransporter adhesin LNP58_05185 PF02769 AIR synthase related protein, C-terminal domain LNP58_05185 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LNP58_05185 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LNP58_05190 PF10411 Disulfide bond isomerase protein N-terminus LNP58_05190 PF13098 Thioredoxin-like domain LNP58_05195 PF00589 Phage integrase family LNP58_05195 PF02899 Phage integrase, N-terminal SAM-like domain LNP58_05210 PF03739 Lipopolysaccharide export system permease LptF/LptG LNP58_05220 PF00883 Cytosol aminopeptidase family, catalytic domain LNP58_05220 PF02789 Cytosol aminopeptidase family, N-terminal domain LNP58_05235 PF08264 Anticodon-binding domain of tRNA LNP58_05235 PF00133 tRNA synthetases class I (I, L, M and V) LNP58_05235 PF10458 Valyl tRNA synthetase tRNA binding arm LNP58_05275 PF05598 Transposase domain (DUF772) LNP58_05275 PF01609 Transposase DDE domain LNP58_05290 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LNP58_05290 PF01464 Transglycosylase SLT domain LNP58_05300 PF01609 Transposase DDE domain LNP58_05300 PF05598 Transposase domain (DUF772) LNP58_05325 PF01066 CDP-alcohol phosphatidyltransferase LNP58_05335 PF04073 Aminoacyl-tRNA editing domain LNP58_05335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNP58_05335 PF03129 Anticodon binding domain LNP58_05340 PF00816 H-NS histone family LNP58_05350 PF02405 Permease MlaE LNP58_05355 PF00005 ABC transporter LNP58_05360 PF03886 ABC-type transport auxiliary lipoprotein component LNP58_05360 PF02470 MlaD protein LNP58_05380 PF14307 Glycosyltransferase WbsX LNP58_05380 PF05045 Rhamnan synthesis protein F LNP58_05385 PF01144 Coenzyme A transferase LNP58_05390 PF01144 Coenzyme A transferase LNP58_05395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNP58_05395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNP58_05395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNP58_05395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNP58_05400 PF01050 Mannose-6-phosphate isomerase LNP58_05400 PF00483 Nucleotidyl transferase LNP58_05405 PF04321 RmlD substrate binding domain LNP58_05410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LNP58_05415 PF00483 Nucleotidyl transferase LNP58_05420 PF16363 GDP-mannose 4,6 dehydratase LNP58_05425 PF01012 Electron transfer flavoprotein domain LNP58_05430 PF00766 Electron transfer flavoprotein FAD-binding domain LNP58_05430 PF01012 Electron transfer flavoprotein domain LNP58_05440 PF00005 ABC transporter LNP58_05450 PF00872 Transposase, Mutator family LNP58_05480 PF01370 NAD dependent epimerase/dehydratase family LNP58_05490 PF01053 Cys/Met metabolism PLP-dependent enzyme LNP58_05495 PF00571 CBS domain LNP58_05495 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_05515 PF00437 Type II/IV secretion system protein LNP58_05520 PF13417 Glutathione S-transferase, N-terminal domain LNP58_05530 PF00270 DEAD/DEAH box helicase LNP58_05530 PF00271 Helicase conserved C-terminal domain LNP58_05535 PF01242 6-pyruvoyl tetrahydropterin synthase LNP58_05550 PF13185 GAF domain LNP58_05560 PF13419 Haloacid dehalogenase-like hydrolase LNP58_05565 PF11799 impB/mucB/samB family C-terminal domain LNP58_05565 PF00817 impB/mucB/samB family LNP58_05570 PF07977 FabA-like domain LNP58_05575 PF00109 Beta-ketoacyl synthase, N-terminal domain LNP58_05575 PF02801 Beta-ketoacyl synthase, C-terminal domain LNP58_05585 PF01432 Peptidase family M3 LNP58_05600 PF00394 Multicopper oxidase LNP58_05600 PF07731 Multicopper oxidase LNP58_05600 PF07732 Multicopper oxidase LNP58_05605 PF05275 Copper resistance protein B precursor (CopB) LNP58_05610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNP58_05640 PF01380 SIS domain LNP58_05645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_05680 PF14602 Hexapeptide repeat of succinyl-transferase LNP58_05680 PF12804 MobA-like NTP transferase domain LNP58_05680 PF00132 Bacterial transferase hexapeptide (six repeats) LNP58_05690 PF01817 Chorismate mutase type II LNP58_05695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LNP58_05700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNP58_05700 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNP58_05705 PF00231 ATP synthase LNP58_05710 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNP58_05710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNP58_05710 PF00306 ATP synthase alpha/beta chain, C terminal domain LNP58_05715 PF00213 ATP synthase delta (OSCP) subunit LNP58_05720 PF00430 ATP synthase B/B' CF(0) LNP58_05725 PF00137 ATP synthase subunit C LNP58_05730 PF00119 ATP synthase A chain LNP58_05750 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_05750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNP58_05760 PF02817 e3 binding domain LNP58_05760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNP58_05760 PF00364 Biotin-requiring enzyme LNP58_05785 PF03180 NLPA lipoprotein LNP58_05790 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_05795 PF00005 ABC transporter LNP58_05795 PF09383 NIL domain LNP58_05800 PF00892 EamA-like transporter family LNP58_05805 PF04461 Protein of unknown function (DUF520) LNP58_05840 PF01479 S4 domain LNP58_05840 PF00849 RNA pseudouridylate synthase LNP58_05845 PF08468 Methyltransferase small domain N-terminal LNP58_05845 PF05175 Methyltransferase small domain LNP58_05860 PF07995 Glucose / Sorbosone dehydrogenase LNP58_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_05875 PF00512 His Kinase A (phospho-acceptor) domain LNP58_05875 PF00989 PAS fold LNP58_05895 PF00842 Alanine racemase, C-terminal domain LNP58_05895 PF01168 Alanine racemase, N-terminal domain LNP58_05900 PF01266 FAD dependent oxidoreductase LNP58_05905 PF01037 Lrp/AsnC ligand binding domain LNP58_05915 PF01641 SelR domain LNP58_05925 PF01618 MotA/TolQ/ExbB proton channel family LNP58_05930 PF13677 Membrane MotB of proton-channel complex MotA/MotB LNP58_05930 PF00691 OmpA family LNP58_05950 PF00072 Response regulator receiver domain LNP58_05950 PF00486 Transcriptional regulatory protein, C terminal LNP58_05955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_05955 PF00512 His Kinase A (phospho-acceptor) domain LNP58_05955 PF08448 PAS fold LNP58_05955 PF13188 PAS domain LNP58_05955 PF00072 Response regulator receiver domain LNP58_05965 PF00082 Subtilase family LNP58_05965 PF04151 Bacterial pre-peptidase C-terminal domain LNP58_05985 PF01061 ABC-2 type transporter LNP58_05990 PF00005 ABC transporter LNP58_05995 PF00999 Sodium/hydrogen exchanger family LNP58_06005 PF02469 Fasciclin domain LNP58_06015 PF03167 Uracil DNA glycosylase superfamily LNP58_06025 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNP58_06035 PF03358 NADPH-dependent FMN reductase LNP58_06040 PF00248 Aldo/keto reductase family LNP58_06055 PF01431 Peptidase family M13 LNP58_06055 PF05649 Peptidase family M13 LNP58_06075 PF13520 Amino acid permease LNP58_06090 PF02743 Cache domain LNP58_06090 PF00672 HAMP domain LNP58_06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_06090 PF06580 Histidine kinase LNP58_06115 PF00158 Sigma-54 interaction domain LNP58_06115 PF02954 Bacterial regulatory protein, Fis family LNP58_06115 PF00072 Response regulator receiver domain LNP58_06125 PF01654 Cytochrome bd terminal oxidase subunit I LNP58_06130 PF02322 Cytochrome bd terminal oxidase subunit II LNP58_06190 PF07715 TonB-dependent Receptor Plug Domain LNP58_06190 PF00593 TonB dependent receptor LNP58_06205 PF00005 ABC transporter LNP58_06285 PF03979 Sigma-70 factor, region 1.1 LNP58_06285 PF00140 Sigma-70 factor, region 1.2 LNP58_06285 PF04542 Sigma-70 region 2 LNP58_06285 PF04539 Sigma-70 region 3 LNP58_06285 PF04545 Sigma-70, region 4 LNP58_06285 PF04546 Sigma-70, non-essential region LNP58_06290 PF02580 D-Tyr-tRNA(Tyr) deacylase LNP58_06295 PF03279 Bacterial lipid A biosynthesis acyltransferase LNP58_06310 PF00925 GTP cyclohydrolase II LNP58_06330 PF00535 Glycosyl transferase family 2 LNP58_06345 PF01189 16S rRNA methyltransferase RsmB/F LNP58_06345 PF01029 NusB family LNP58_06350 PF02911 Formyl transferase, C-terminal domain LNP58_06350 PF00551 Formyl transferase LNP58_06355 PF01327 Polypeptide deformylase LNP58_06360 PF01476 LysM domain LNP58_06365 PF02481 DNA recombination-mediator protein A LNP58_06365 PF17782 DprA winged helix domain LNP58_06370 PF04361 Protein of unknown function (DUF494) LNP58_06375 PF07963 Prokaryotic N-terminal methylation motif LNP58_06375 PF00114 Pilin (bacterial filament) LNP58_06385 PF01131 DNA topoisomerase LNP58_06385 PF01751 Toprim domain LNP58_06385 PF13368 Topoisomerase C-terminal repeat LNP58_06390 PF01300 Telomere recombination LNP58_06415 PF01343 Peptidase family S49 LNP58_06420 PF01554 MatE LNP58_06440 PF00271 Helicase conserved C-terminal domain LNP58_06440 PF17764 3′ DNA-binding domain (3′BD) LNP58_06440 PF18074 Primosomal protein N C-terminal domain LNP58_06440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LNP58_06440 PF00270 DEAD/DEAH box helicase LNP58_06475 PF03091 CutA1 divalent ion tolerance protein LNP58_06480 PF11412 Disulphide bond corrector protein DsbC LNP58_06480 PF02683 Cytochrome C biogenesis protein transmembrane region LNP58_06485 PF01220 Dehydroquinase class II LNP58_06490 PF00364 Biotin-requiring enzyme LNP58_06500 PF02785 Biotin carboxylase C-terminal domain LNP58_06500 PF00289 Biotin carboxylase, N-terminal domain LNP58_06500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNP58_06530 PF01381 Helix-turn-helix LNP58_06540 PF02954 Bacterial regulatory protein, Fis family LNP58_06570 PF01808 AICARFT/IMPCHase bienzyme LNP58_06570 PF02142 MGS-like domain LNP58_06575 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system LNP58_06585 PF02843 Phosphoribosylglycinamide synthetase, C domain LNP58_06585 PF02844 Phosphoribosylglycinamide synthetase, N domain LNP58_06585 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LNP58_06590 PF00005 ABC transporter LNP58_06590 PF02687 FtsX-like permease family LNP58_06590 PF12704 MacB-like periplasmic core domain LNP58_06600 PF12805 FUSC-like inner membrane protein yccS LNP58_06615 PF07690 Major Facilitator Superfamily LNP58_06630 PF17113 Regulatory signalling modulator protein AmpE LNP58_06630 PF03186 CobD/Cbib protein LNP58_06635 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LNP58_06635 PF00293 NUDIX domain LNP58_06635 PF09297 NADH pyrophosphatase zinc ribbon domain LNP58_06645 PF01521 Iron-sulphur cluster biosynthesis LNP58_06670 PF00486 Transcriptional regulatory protein, C terminal LNP58_06670 PF00072 Response regulator receiver domain LNP58_06675 PF00672 HAMP domain LNP58_06675 PF00072 Response regulator receiver domain LNP58_06675 PF01627 Hpt domain LNP58_06675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNP58_06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_06675 PF00512 His Kinase A (phospho-acceptor) domain LNP58_06710 PF00579 tRNA synthetases class I (W and Y) LNP58_06715 PF04225 Opacity-associated protein A LysM-like domain LNP58_06715 PF01551 Peptidase family M23 LNP58_06720 PF03702 Anhydro-N-acetylmuramic acid kinase LNP58_06730 PF07690 Major Facilitator Superfamily LNP58_06740 PF03372 Endonuclease/Exonuclease/phosphatase family LNP58_06745 PF00156 Phosphoribosyl transferase domain LNP58_06755 PF13614 AAA domain LNP58_06760 PF17762 HTH domain found in ParB protein LNP58_06760 PF02195 ParB-like nuclease domain LNP58_06770 PF01370 NAD dependent epimerase/dehydratase family LNP58_06775 PF00535 Glycosyl transferase family 2 LNP58_06790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNP58_06790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNP58_06790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNP58_06790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNP58_06795 PF00692 dUTPase LNP58_06800 PF04127 DNA / pantothenate metabolism flavoprotein LNP58_06800 PF02441 Flavoprotein LNP58_06805 PF04002 RadC-like JAB domain LNP58_06810 PF03485 Arginyl tRNA synthetase N terminal domain LNP58_06810 PF05746 DALR anticodon binding domain LNP58_06810 PF00750 tRNA synthetases class I (R) LNP58_06825 PF00106 short chain dehydrogenase LNP58_06850 PF02627 Carboxymuconolactone decarboxylase family LNP58_06855 PF12146 Serine aminopeptidase, S33 LNP58_06860 PF10397 Adenylosuccinate lyase C-terminus LNP58_06860 PF00206 Lyase LNP58_06875 PF00775 Dioxygenase LNP58_06875 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LNP58_06880 PF00108 Thiolase, N-terminal domain LNP58_06880 PF02803 Thiolase, C-terminal domain LNP58_06910 PF00268 Ribonucleotide reductase, small chain LNP58_06915 PF03477 ATP cone domain LNP58_06915 PF02867 Ribonucleotide reductase, barrel domain LNP58_06915 PF00317 Ribonucleotide reductase, all-alpha domain LNP58_06925 PF00583 Acetyltransferase (GNAT) family LNP58_06925 PF13380 CoA binding domain LNP58_06925 PF13607 Succinyl-CoA ligase like flavodoxin domain LNP58_06935 PF00571 CBS domain LNP58_06935 PF01769 Divalent cation transporter LNP58_06935 PF03448 MgtE intracellular N domain LNP58_06940 PF00999 Sodium/hydrogen exchanger family LNP58_06940 PF02254 TrkA-N domain LNP58_06950 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LNP58_06950 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LNP58_06955 PF00723 Glycosyl hydrolases family 15 LNP58_06970 PF05166 YcgL domain LNP58_06975 PF00109 Beta-ketoacyl synthase, N-terminal domain LNP58_06975 PF02801 Beta-ketoacyl synthase, C-terminal domain LNP58_06985 PF00535 Glycosyl transferase family 2 LNP58_07010 PF00155 Aminotransferase class I and II LNP58_07015 PF06968 Biotin and Thiamin Synthesis associated domain LNP58_07015 PF04055 Radical SAM superfamily LNP58_07025 PF01040 UbiA prenyltransferase family LNP58_07035 PF01594 AI-2E family transporter LNP58_07045 PF02789 Cytosol aminopeptidase family, N-terminal domain LNP58_07045 PF00883 Cytosol aminopeptidase family, catalytic domain LNP58_07055 PF08281 Sigma-70, region 4 LNP58_07055 PF04542 Sigma-70 region 2 LNP58_07060 PF00199 Catalase LNP58_07080 PF00892 EamA-like transporter family LNP58_07105 PF00753 Metallo-beta-lactamase superfamily LNP58_07110 PF00579 tRNA synthetases class I (W and Y) LNP58_07115 PF05532 CsbD-like LNP58_07130 PF00491 Arginase family LNP58_07150 PF02223 Thymidylate kinase LNP58_07165 PF03309 Type III pantothenate kinase LNP58_07170 PF03099 Biotin/lipoate A/B protein ligase family LNP58_07170 PF08279 HTH domain LNP58_07170 PF02237 Biotin protein ligase C terminal domain LNP58_07180 PF06167 Glucose-regulated metallo-peptidase M90 LNP58_07195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_07200 PF00072 Response regulator receiver domain LNP58_07200 PF00486 Transcriptional regulatory protein, C terminal LNP58_07210 PF01207 Dihydrouridine synthase (Dus) LNP58_07230 PF00199 Catalase LNP58_07230 PF06628 Catalase-related immune-responsive LNP58_07250 PF06733 DEAD_2 LNP58_07250 PF13307 Helicase C-terminal domain LNP58_07265 PF08501 Shikimate dehydrogenase substrate binding domain LNP58_07265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LNP58_07265 PF01488 Shikimate / quinate 5-dehydrogenase LNP58_07280 PF00175 Oxidoreductase NAD-binding domain LNP58_07280 PF00258 Flavodoxin LNP58_07280 PF00667 FAD binding domain LNP58_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_07290 PF03466 LysR substrate binding domain LNP58_07305 PF00490 Delta-aminolevulinic acid dehydratase LNP58_07330 PF00326 Prolyl oligopeptidase family LNP58_07330 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LNP58_07335 PF00043 Glutathione S-transferase, C-terminal domain LNP58_07335 PF02798 Glutathione S-transferase, N-terminal domain LNP58_07355 PF04820 Tryptophan halogenase LNP58_07370 PF00005 ABC transporter LNP58_07380 PF01381 Helix-turn-helix LNP58_07395 PF02583 Metal-sensitive transcriptional repressor LNP58_07400 PF01545 Cation efflux family LNP58_07405 PF01383 CpcD/allophycocyanin linker domain LNP58_07405 PF00175 Oxidoreductase NAD-binding domain LNP58_07410 PF00005 ABC transporter LNP58_07415 PF01061 ABC-2 type transporter LNP58_07425 PF02558 Ketopantoate reductase PanE/ApbA LNP58_07425 PF08546 Ketopantoate reductase PanE/ApbA C terminal LNP58_07505 PF03109 ABC1 family LNP58_07515 PF00849 RNA pseudouridylate synthase LNP58_07525 PF00472 RF-1 domain LNP58_07545 PF01432 Peptidase family M3 LNP58_07580 PF05336 L-rhamnose mutarotase LNP58_07585 PF07690 Major Facilitator Superfamily LNP58_07590 PF09339 IclR helix-turn-helix domain LNP58_07590 PF01614 Bacterial transcriptional regulator LNP58_07595 PF02659 Putative manganese efflux pump LNP58_07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_07600 PF00512 His Kinase A (phospho-acceptor) domain LNP58_07610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LNP58_07610 PF06165 Glycosyltransferase family 36 LNP58_07630 PF01011 PQQ enzyme repeat LNP58_07630 PF13360 PQQ-like domain LNP58_07630 PF13570 PQQ-like domain LNP58_07705 PF00005 ABC transporter LNP58_07710 PF02405 Permease MlaE LNP58_07715 PF02470 MlaD protein LNP58_07720 PF05494 MlaC protein LNP58_07730 PF04333 MlaA lipoprotein LNP58_07750 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LNP58_07750 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LNP58_07750 PF06827 Zinc finger found in FPG and IleRS LNP58_07800 PF00360 Phytochrome region LNP58_07800 PF01590 GAF domain LNP58_07800 PF08446 PAS fold LNP58_07800 PF13426 PAS domain LNP58_07805 PF01126 Heme oxygenase LNP58_07815 PF01263 Aldose 1-epimerase LNP58_07820 PF05598 Transposase domain (DUF772) LNP58_07820 PF01609 Transposase DDE domain LNP58_07835 PF02810 SEC-C motif LNP58_07845 PF05598 Transposase domain (DUF772) LNP58_07845 PF01609 Transposase DDE domain LNP58_07850 PF00150 Cellulase (glycosyl hydrolase family 5) LNP58_07860 PF00150 Cellulase (glycosyl hydrolase family 5) LNP58_07870 PF00150 Cellulase (glycosyl hydrolase family 5) LNP58_07875 PF08240 Alcohol dehydrogenase GroES-like domain LNP58_07875 PF00107 Zinc-binding dehydrogenase LNP58_07920 PF01037 Lrp/AsnC ligand binding domain LNP58_07925 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LNP58_07965 PF01553 Acyltransferase LNP58_07980 PF00356 Bacterial regulatory proteins, lacI family LNP58_07995 PF04820 Tryptophan halogenase LNP58_08000 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LNP58_08005 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LNP58_08010 PF04337 Protein of unknown function, DUF480 LNP58_08025 PF00580 UvrD/REP helicase N-terminal domain LNP58_08025 PF13361 UvrD-like helicase C-terminal domain LNP58_08030 PF00265 Thymidine kinase LNP58_08040 PF04349 Periplasmic glucan biosynthesis protein, MdoG LNP58_08060 PF12697 Alpha/beta hydrolase family LNP58_08070 PF13649 Methyltransferase domain LNP58_08090 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_08105 PF01134 Glucose inhibited division protein A LNP58_08105 PF13932 GidA associated domain LNP58_08145 PF04717 Type VI secretion system, phage-baseplate injector LNP58_08145 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_08145 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_08150 PF05598 Transposase domain (DUF772) LNP58_08155 PF17810 Arginine decarboxylase helical bundle domain LNP58_08155 PF17944 Arginine decarboxylase C-terminal helical extension LNP58_08155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LNP58_08160 PF17284 Spermidine synthase tetramerisation domain LNP58_08190 PF00543 Nitrogen regulatory protein P-II LNP58_08195 PF04380 Membrane fusogenic activity LNP58_08200 PF13335 Magnesium chelatase, subunit ChlI C-terminal LNP58_08200 PF01078 Magnesium chelatase, subunit ChlI LNP58_08245 PF00128 Alpha amylase, catalytic domain LNP58_08245 PF11896 Domain of unknown function (DUF3416) LNP58_08250 PF00128 Alpha amylase, catalytic domain LNP58_08250 PF16657 Maltogenic Amylase, C-terminal domain LNP58_08255 PF00128 Alpha amylase, catalytic domain LNP58_08255 PF02806 Alpha amylase, C-terminal all-beta domain LNP58_08255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNP58_08275 PF00356 Bacterial regulatory proteins, lacI family LNP58_08285 PF05598 Transposase domain (DUF772) LNP58_08325 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_08325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LNP58_08330 PF01493 GXGXG motif LNP58_08330 PF01645 Conserved region in glutamate synthase LNP58_08330 PF04898 Glutamate synthase central domain LNP58_08330 PF00310 Glutamine amidotransferases class-II LNP58_08390 PF09369 Domain of unknown function (DUF1998) LNP58_08390 PF00271 Helicase conserved C-terminal domain LNP58_08390 PF00270 DEAD/DEAH box helicase LNP58_08395 PF03006 Haemolysin-III related LNP58_08410 PF08845 Toxin SymE, type I toxin-antitoxin system LNP58_08435 PF00005 ABC transporter LNP58_08440 PF13533 Biotin-lipoyl like LNP58_08475 PF13344 Haloacid dehalogenase-like hydrolase LNP58_08475 PF00293 NUDIX domain LNP58_08495 PF00665 Integrase core domain LNP58_08495 PF13936 Helix-turn-helix domain LNP58_08520 PF05598 Transposase domain (DUF772) LNP58_08520 PF01609 Transposase DDE domain LNP58_08530 PF08338 Domain of unknown function (DUF1731) LNP58_08530 PF01370 NAD dependent epimerase/dehydratase family LNP58_08550 PF00595 PDZ domain LNP58_08585 PF05819 NolX protein LNP58_08635 PF01313 Bacterial export proteins, family 3 LNP58_08640 PF00813 FliP family LNP58_08655 PF00771 FHIPEP family LNP58_08660 PF01312 FlhB HrpN YscU SpaS Family LNP58_08675 PF01514 Secretory protein of YscJ/FliF family LNP58_08690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNP58_08690 PF02874 ATP synthase alpha/beta family, beta-barrel domain LNP58_08690 PF18269 T3SS EscN ATPase C-terminal domain LNP58_08700 PF01311 Bacterial export proteins, family 1 LNP58_08705 PF00263 Bacterial type II and III secretion system protein LNP58_08705 PF03958 Bacterial type II/III secretion system short domain LNP58_08715 PF01464 Transglycosylase SLT domain LNP58_08735 PF00924 Mechanosensitive ion channel LNP58_08735 PF12794 Mechanosensitive ion channel inner membrane domain 1 LNP58_08735 PF12795 Mechanosensitive ion channel porin domain LNP58_08760 PF03109 ABC1 family LNP58_08765 PF05661 Protein of unknown function (DUF808) LNP58_08770 PF02638 Glycosyl hydrolase-like 10 LNP58_08775 PF00990 Diguanylate cyclase, GGDEF domain LNP58_08780 PF08323 Starch synthase catalytic domain LNP58_08780 PF00534 Glycosyl transferases group 1 LNP58_08785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNP58_08785 PF02806 Alpha amylase, C-terminal all-beta domain LNP58_08785 PF00128 Alpha amylase, catalytic domain LNP58_08790 PF00128 Alpha amylase, catalytic domain LNP58_08790 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNP58_08790 PF11941 Domain of unknown function (DUF3459) LNP58_08795 PF02446 4-alpha-glucanotransferase LNP58_08800 PF00128 Alpha amylase, catalytic domain LNP58_08810 PF00128 Alpha amylase, catalytic domain LNP58_08810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LNP58_08815 PF13460 NAD(P)H-binding LNP58_08830 PF03150 Di-haem cytochrome c peroxidase LNP58_08875 PF01609 Transposase DDE domain LNP58_08875 PF05598 Transposase domain (DUF772) LNP58_08915 PF06903 VirK protein LNP58_08925 PF00271 Helicase conserved C-terminal domain LNP58_08925 PF00270 DEAD/DEAH box helicase LNP58_08930 PF05598 Transposase domain (DUF772) LNP58_08930 PF01609 Transposase DDE domain LNP58_08960 PF05598 Transposase domain (DUF772) LNP58_08970 PF00005 ABC transporter LNP58_08980 PF01609 Transposase DDE domain LNP58_08980 PF05598 Transposase domain (DUF772) LNP58_08990 PF00294 pfkB family carbohydrate kinase LNP58_09000 PF07055 Enoyl reductase FAD binding domain LNP58_09000 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LNP58_09000 PF12241 Trans-2-enoyl-CoA reductase catalytic region LNP58_09015 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family LNP58_09020 PF01070 FMN-dependent dehydrogenase LNP58_09025 PF01609 Transposase DDE domain LNP58_09025 PF05598 Transposase domain (DUF772) LNP58_09040 PF00593 TonB dependent receptor LNP58_09040 PF07715 TonB-dependent Receptor Plug Domain LNP58_09045 PF00155 Aminotransferase class I and II LNP58_09050 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LNP58_09060 PF13091 PLD-like domain LNP58_09060 PF13396 Phospholipase_D-nuclease N-terminal LNP58_09070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LNP58_09075 PF02472 Biopolymer transport protein ExbD/TolR LNP58_09080 PF02472 Biopolymer transport protein ExbD/TolR LNP58_09085 PF01618 MotA/TolQ/ExbB proton channel family LNP58_09090 PF03544 Gram-negative bacterial TonB protein C-terminal LNP58_09100 PF01435 Peptidase family M48 LNP58_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_09110 PF18053 DNA gyrase B subunit insert domain LNP58_09110 PF00204 DNA gyrase B LNP58_09110 PF01751 Toprim domain LNP58_09110 PF00986 DNA gyrase B subunit, carboxyl terminus LNP58_09115 PF02463 RecF/RecN/SMC N terminal domain LNP58_09120 PF00712 DNA polymerase III beta subunit, N-terminal domain LNP58_09120 PF02767 DNA polymerase III beta subunit, central domain LNP58_09120 PF02768 DNA polymerase III beta subunit, C-terminal domain LNP58_09125 PF11638 DnaA N-terminal domain LNP58_09125 PF00308 Bacterial dnaA protein LNP58_09125 PF08299 Bacterial dnaA protein helix-turn-helix LNP58_09130 PF00468 Ribosomal protein L34 LNP58_09135 PF00825 Ribonuclease P LNP58_09140 PF02096 60Kd inner membrane protein LNP58_09140 PF14849 YidC periplasmic domain LNP58_09145 PF01522 Polysaccharide deacetylase LNP58_09150 PF01926 50S ribosome-binding GTPase LNP58_09150 PF12631 MnmE helical domain LNP58_09150 PF10396 GTP-binding protein TrmE N-terminus LNP58_09155 PF01569 PAP2 superfamily LNP58_09165 PF03009 Glycerophosphoryl diester phosphodiesterase family LNP58_09170 PF01694 Rhomboid family LNP58_09175 PF03741 Integral membrane protein TerC family LNP58_09180 PF10672 S-adenosylmethionine-dependent methyltransferase LNP58_09180 PF17785 PUA-like domain LNP58_09195 PF07690 Major Facilitator Superfamily LNP58_09200 PF02595 Glycerate kinase family LNP58_09295 PF00083 Sugar (and other) transporter LNP58_09325 PF01227 GTP cyclohydrolase I LNP58_09330 PF02463 RecF/RecN/SMC N terminal domain LNP58_09375 PF04389 Peptidase family M28 LNP58_09385 PF01551 Peptidase family M23 LNP58_09390 PF13180 PDZ domain LNP58_09390 PF03572 Peptidase family S41 LNP58_09400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNP58_09400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNP58_09415 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LNP58_09425 PF04055 Radical SAM superfamily LNP58_09440 PF00255 Glutathione peroxidase LNP58_09450 PF02646 RmuC family LNP58_09460 PF13520 Amino acid permease LNP58_09475 PF13361 UvrD-like helicase C-terminal domain LNP58_09475 PF00580 UvrD/REP helicase N-terminal domain LNP58_09490 PF13396 Phospholipase_D-nuclease N-terminal LNP58_09490 PF13091 PLD-like domain LNP58_09495 PF03466 LysR substrate binding domain LNP58_09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_09500 PF03737 Aldolase/RraA LNP58_09505 PF04303 PrpF protein LNP58_09525 PF00471 Ribosomal protein L33 LNP58_09530 PF00830 Ribosomal L28 family LNP58_09545 PF02527 rRNA small subunit methyltransferase G LNP58_09550 PF16655 PhoD-like phosphatase, N-terminal domain LNP58_09550 PF09423 PhoD-like phosphatase LNP58_09555 PF16655 PhoD-like phosphatase, N-terminal domain LNP58_09555 PF09423 PhoD-like phosphatase LNP58_09560 PF01648 4'-phosphopantetheinyl transferase superfamily LNP58_09565 PF04226 Transglycosylase associated protein LNP58_09575 PF03372 Endonuclease/Exonuclease/phosphatase family LNP58_09590 PF00474 Sodium:solute symporter family LNP58_09595 PF04341 Protein of unknown function, DUF485 LNP58_09605 PF00501 AMP-binding enzyme LNP58_09605 PF16177 Acetyl-coenzyme A synthetase N-terminus LNP58_09605 PF13193 AMP-binding enzyme C-terminal domain LNP58_09610 PF00196 Bacterial regulatory proteins, luxR family LNP58_09610 PF00072 Response regulator receiver domain LNP58_09645 PF00248 Aldo/keto reductase family LNP58_09660 PF01557 Fumarylacetoacetate (FAA) hydrolase family LNP58_09665 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNP58_09665 PF13378 Enolase C-terminal domain-like LNP58_09670 PF07308 Protein of unknown function (DUF1456) LNP58_09675 PF08482 ATP-dependent helicase C-terminal LNP58_09675 PF00271 Helicase conserved C-terminal domain LNP58_09675 PF04408 Helicase associated domain (HA2) LNP58_09675 PF00270 DEAD/DEAH box helicase LNP58_09685 PF00849 RNA pseudouridylate synthase LNP58_09695 PF00248 Aldo/keto reductase family LNP58_09700 PF16884 N-terminal domain of oxidoreductase LNP58_09700 PF00107 Zinc-binding dehydrogenase LNP58_09705 PF00248 Aldo/keto reductase family LNP58_09730 PF05598 Transposase domain (DUF772) LNP58_09730 PF01609 Transposase DDE domain LNP58_09745 PF01734 Patatin-like phospholipase LNP58_09755 PF00005 ABC transporter LNP58_09770 PF00005 ABC transporter LNP58_09770 PF00571 CBS domain LNP58_09775 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_09785 PF12867 DinB superfamily LNP58_09785 PF03781 Sulfatase-modifying factor enzyme 1 LNP58_09790 PF10017 Histidine-specific methyltransferase, SAM-dependent LNP58_09795 PF13657 HipA N-terminal domain LNP58_09795 PF07804 HipA-like C-terminal domain LNP58_09800 PF01381 Helix-turn-helix LNP58_09820 PF01883 Iron-sulfur cluster assembly protein LNP58_09820 PF10609 NUBPL iron-transfer P-loop NTPase LNP58_09835 PF13091 PLD-like domain LNP58_09840 PF03061 Thioesterase superfamily LNP58_09875 PF02673 Bacitracin resistance protein BacA LNP58_09880 PF00120 Glutamine synthetase, catalytic domain LNP58_09880 PF03951 Glutamine synthetase, beta-Grasp domain LNP58_09885 PF00543 Nitrogen regulatory protein P-II LNP58_09890 PF00909 Ammonium Transporter Family LNP58_09895 PF00512 His Kinase A (phospho-acceptor) domain LNP58_09895 PF00989 PAS fold LNP58_09895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_09900 PF02954 Bacterial regulatory protein, Fis family LNP58_09900 PF00072 Response regulator receiver domain LNP58_09900 PF00158 Sigma-54 interaction domain LNP58_09905 PF00080 Copper/zinc superoxide dismutase (SODC) LNP58_09910 PF00080 Copper/zinc superoxide dismutase (SODC) LNP58_09965 PF17946 RecC C-terminal domain LNP58_09970 PF12705 PD-(D/E)XK nuclease superfamily LNP58_09970 PF00580 UvrD/REP helicase N-terminal domain LNP58_09970 PF13361 UvrD-like helicase C-terminal domain LNP58_09975 PF13538 UvrD-like helicase C-terminal domain LNP58_09980 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LNP58_09985 PF01381 Helix-turn-helix LNP58_10065 PF02566 OsmC-like protein LNP58_10070 PF01047 MarR family LNP58_10100 PF00440 Bacterial regulatory proteins, tetR family LNP58_10105 PF00111 2Fe-2S iron-sulfur cluster binding domain LNP58_10105 PF00175 Oxidoreductase NAD-binding domain LNP58_10105 PF00970 Oxidoreductase FAD-binding domain LNP58_10110 PF00487 Fatty acid desaturase LNP58_10155 PF04616 Glycosyl hydrolases family 43 LNP58_10185 PF00553 Cellulose binding domain LNP58_10185 PF00331 Glycosyl hydrolase family 10 LNP58_10185 PF03422 Carbohydrate binding module (family 6) LNP58_10190 PF02614 Glucuronate isomerase LNP58_10210 PF08125 Mannitol dehydrogenase C-terminal domain LNP58_10210 PF01232 Mannitol dehydrogenase Rossmann domain LNP58_10215 PF14310 Fibronectin type III-like domain LNP58_10215 PF01915 Glycosyl hydrolase family 3 C-terminal domain LNP58_10215 PF07691 PA14 domain LNP58_10215 PF00933 Glycosyl hydrolase family 3 N terminal domain LNP58_10220 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LNP58_10220 PF04616 Glycosyl hydrolases family 43 LNP58_10225 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNP58_10225 PF13378 Enolase C-terminal domain-like LNP58_10235 PF03648 Glycosyl hydrolase family 67 N-terminus LNP58_10235 PF07488 Glycosyl hydrolase family 67 middle domain LNP58_10235 PF07477 Glycosyl hydrolase family 67 C-terminus LNP58_10245 PF00356 Bacterial regulatory proteins, lacI family LNP58_10255 PF01171 PP-loop family LNP58_10260 PF04381 Putative exonuclease, RdgC LNP58_10285 PF00762 Ferrochelatase LNP58_10295 PF02416 mttA/Hcf106 family LNP58_10300 PF02416 mttA/Hcf106 family LNP58_10305 PF00902 Sec-independent protein translocase protein (TatC) LNP58_10315 PF00117 Glutamine amidotransferase class-I LNP58_10315 PF00958 GMP synthase C terminal domain LNP58_10330 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LNP58_10330 PF00437 Type II/IV secretion system protein LNP58_10335 PF02091 Glycyl-tRNA synthetase alpha subunit LNP58_10340 PF02092 Glycyl-tRNA synthetase beta subunit LNP58_10340 PF05746 DALR anticodon binding domain LNP58_10345 PF13181 Tetratricopeptide repeat LNP58_10350 PF07715 TonB-dependent Receptor Plug Domain LNP58_10350 PF00593 TonB dependent receptor LNP58_10365 PF03969 AFG1-like ATPase LNP58_10385 PF02492 CobW/HypB/UreG, nucleotide-binding domain LNP58_10385 PF07683 Cobalamin synthesis protein cobW C-terminal domain LNP58_10440 PF02770 Acyl-CoA dehydrogenase, middle domain LNP58_10440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNP58_10440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNP58_10445 PF01039 Carboxyl transferase domain LNP58_10450 PF18140 Propionyl-coenzyme A carboxylase BT domain LNP58_10450 PF02785 Biotin carboxylase C-terminal domain LNP58_10450 PF00364 Biotin-requiring enzyme LNP58_10450 PF00289 Biotin carboxylase, N-terminal domain LNP58_10450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNP58_10455 PF00326 Prolyl oligopeptidase family LNP58_10525 PF00266 Aminotransferase class-V LNP58_10575 PF01026 TatD related DNase LNP58_10590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_10590 PF03466 LysR substrate binding domain LNP58_10595 PF07690 Major Facilitator Superfamily LNP58_10605 PF02146 Sir2 family LNP58_10610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNP58_10615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LNP58_10615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LNP58_10635 PF00551 Formyl transferase LNP58_10640 PF00072 Response regulator receiver domain LNP58_10640 PF00486 Transcriptional regulatory protein, C terminal LNP58_10660 PF02677 Epoxyqueuosine reductase QueH LNP58_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_10665 PF03466 LysR substrate binding domain LNP58_10670 PF03358 NADPH-dependent FMN reductase LNP58_10680 PF08267 Cobalamin-independent synthase, N-terminal domain LNP58_10680 PF01717 Cobalamin-independent synthase, Catalytic domain LNP58_10685 PF03812 2-keto-3-deoxygluconate permease LNP58_10695 PF05368 NmrA-like family LNP58_10700 PF01638 HxlR-like helix-turn-helix LNP58_10750 PF04820 Tryptophan halogenase LNP58_10755 PF00550 Phosphopantetheine attachment site LNP58_10765 PF01553 Acyltransferase LNP58_10805 PF04357 TamB, inner membrane protein subunit of TAM complex LNP58_10810 PF01103 Surface antigen LNP58_10810 PF17243 POTRA domain TamA domain 1 LNP58_10820 PF05598 Transposase domain (DUF772) LNP58_10830 PF07498 Rho termination factor, N-terminal domain LNP58_10830 PF07497 Rho termination factor, RNA-binding domain LNP58_10830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNP58_10835 PF00085 Thioredoxin LNP58_10840 PF00271 Helicase conserved C-terminal domain LNP58_10840 PF00270 DEAD/DEAH box helicase LNP58_10840 PF12300 ATP-dependent RNA helicase RhlB LNP58_10845 PF00005 ABC transporter LNP58_10850 PF18075 FtsX extracellular domain LNP58_10855 PF00072 Response regulator receiver domain LNP58_10855 PF01339 CheB methylesterase LNP58_10860 PF03167 Uracil DNA glycosylase superfamily LNP58_10865 PF04542 Sigma-70 region 2 LNP58_10865 PF04545 Sigma-70, region 4 LNP58_10875 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_10900 PF00166 Chaperonin 10 Kd subunit LNP58_10905 PF00118 TCP-1/cpn60 chaperonin family LNP58_10925 PF00793 DAHP synthetase I family LNP58_10950 PF08450 SMP-30/Gluconolactonase/LRE-like region LNP58_10960 PF08335 GlnD PII-uridylyltransferase LNP58_10960 PF03710 Glutamate-ammonia ligase adenylyltransferase LNP58_10965 PF02592 Putative vitamin uptake transporter LNP58_10990 PF00881 Nitroreductase family LNP58_10995 PF04264 YceI-like domain LNP58_11040 PF03377 TAL effector repeat LNP58_11055 PF17831 Pyruvate dehydrogenase E1 component middle domain LNP58_11055 PF00456 Transketolase, thiamine diphosphate binding domain LNP58_11080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNP58_11080 PF01612 3'-5' exonuclease LNP58_11080 PF00476 DNA polymerase family A LNP58_11080 PF01367 5'-3' exonuclease, C-terminal SAM fold LNP58_11085 PF01218 Coproporphyrinogen III oxidase LNP58_11095 PF01609 Transposase DDE domain LNP58_11095 PF05598 Transposase domain (DUF772) LNP58_11115 PF00589 Phage integrase family LNP58_11115 PF13495 Phage integrase, N-terminal SAM-like domain LNP58_11120 PF00920 Dehydratase family LNP58_11125 PF03692 Putative zinc- or iron-chelating domain LNP58_11130 PF00132 Bacterial transferase hexapeptide (six repeats) LNP58_11155 PF07690 Major Facilitator Superfamily LNP58_11160 PF01966 HD domain LNP58_11160 PF11871 Domain of unknown function (DUF3391) LNP58_11170 PF05598 Transposase domain (DUF772) LNP58_11180 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LNP58_11185 PF00501 AMP-binding enzyme LNP58_11190 PF03692 Putative zinc- or iron-chelating domain LNP58_11195 PF00561 alpha/beta hydrolase fold LNP58_11205 PF01555 DNA methylase LNP58_11210 PF13784 Fic/DOC family N-terminal LNP58_11210 PF02661 Fic/DOC family LNP58_11215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNP58_11215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNP58_11230 PF00588 SpoU rRNA Methylase family LNP58_11235 PF07690 Major Facilitator Superfamily LNP58_11250 PF00158 Sigma-54 interaction domain LNP58_11250 PF00072 Response regulator receiver domain LNP58_11250 PF02954 Bacterial regulatory protein, Fis family LNP58_11255 PF00512 His Kinase A (phospho-acceptor) domain LNP58_11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_11260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LNP58_11260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LNP58_11260 PF00205 Thiamine pyrophosphate enzyme, central domain LNP58_11270 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LNP58_11270 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LNP58_11275 PF02556 Preprotein translocase subunit SecB LNP58_11280 PF00581 Rhodanese-like domain LNP58_11315 PF07063 Domain of unknown function (DUF1338) LNP58_11320 PF00873 AcrB/AcrD/AcrF family LNP58_11325 PF00873 AcrB/AcrD/AcrF family LNP58_11330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_11335 PF07687 Peptidase dimerisation domain LNP58_11335 PF01546 Peptidase family M20/M25/M40 LNP58_11345 PF14489 QueF-like protein LNP58_11345 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LNP58_11355 PF00872 Transposase, Mutator family LNP58_11400 PF05598 Transposase domain (DUF772) LNP58_11410 PF03971 Monomeric isocitrate dehydrogenase LNP58_11435 PF00117 Glutamine amidotransferase class-I LNP58_11445 PF02885 Glycosyl transferase family, helical bundle domain LNP58_11445 PF00591 Glycosyl transferase family, a/b domain LNP58_11450 PF00218 Indole-3-glycerol phosphate synthase LNP58_11460 PF00027 Cyclic nucleotide-binding domain LNP58_11460 PF00325 Bacterial regulatory proteins, crp family LNP58_11465 PF02675 S-adenosylmethionine decarboxylase LNP58_11470 PF00893 Small Multidrug Resistance protein LNP58_11475 PF03232 Ubiquinone biosynthesis protein COQ7 LNP58_11480 PF00572 Ribosomal protein L13 LNP58_11485 PF00380 Ribosomal protein S9/S16 LNP58_11500 PF00293 NUDIX domain LNP58_11510 PF00210 Ferritin-like domain LNP58_11525 PF00171 Aldehyde dehydrogenase family LNP58_11525 PF01619 Proline dehydrogenase LNP58_11525 PF14850 DNA-binding domain of Proline dehydrogenase LNP58_11525 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LNP58_11535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LNP58_11535 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LNP58_11540 PF00115 Cytochrome C and Quinol oxidase polypeptide I LNP58_11550 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LNP58_11555 PF00510 Cytochrome c oxidase subunit III LNP58_11580 PF01040 UbiA prenyltransferase family LNP58_11595 PF13593 SBF-like CPA transporter family (DUF4137) LNP58_11615 PF10410 DnaB-helicase binding domain of primase LNP58_11615 PF08278 DNA primase DnaG DnaB-binding LNP58_11615 PF08275 DNA primase catalytic core, N-terminal domain LNP58_11615 PF01807 CHC2 zinc finger LNP58_11620 PF03631 Virulence factor BrkB LNP58_11630 PF09424 Yqey-like protein LNP58_11635 PF01165 Ribosomal protein S21 LNP58_11640 PF00814 Glycoprotease family LNP58_11645 PF02152 Dihydroneopterin aldolase LNP58_11650 PF14310 Fibronectin type III-like domain LNP58_11650 PF00933 Glycosyl hydrolase family 3 N terminal domain LNP58_11650 PF01915 Glycosyl hydrolase family 3 C-terminal domain LNP58_11680 PF07995 Glucose / Sorbosone dehydrogenase LNP58_11685 PF05360 yiaA/B two helix domain LNP58_11720 PF13520 Amino acid permease LNP58_11755 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNP58_11755 PF13378 Enolase C-terminal domain-like LNP58_11765 PF01510 N-acetylmuramoyl-L-alanine amidase LNP58_11770 PF01427 D-ala-D-ala dipeptidase LNP58_11800 PF05598 Transposase domain (DUF772) LNP58_11800 PF01609 Transposase DDE domain LNP58_11850 PF02803 Thiolase, C-terminal domain LNP58_11850 PF00108 Thiolase, N-terminal domain LNP58_11900 PF03301 Tryptophan 2,3-dioxygenase LNP58_11905 PF00854 POT family LNP58_11915 PF01047 MarR family LNP58_11920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNP58_11925 PF04209 homogentisate 1,2-dioxygenase LNP58_11930 PF01609 Transposase DDE domain LNP58_11930 PF05598 Transposase domain (DUF772) LNP58_11940 PF03334 Na+/H+ antiporter subunit LNP58_11945 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LNP58_11955 PF00361 Proton-conducting membrane transporter LNP58_11960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LNP58_11965 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LNP58_11965 PF00361 Proton-conducting membrane transporter LNP58_11965 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LNP58_11965 PF13244 Domain of unknown function (DUF4040) LNP58_11990 PF01259 SAICAR synthetase LNP58_11995 PF00226 DnaJ domain LNP58_11995 PF05099 Tellurite resistance protein TerB LNP58_12000 PF00834 Ribulose-phosphate 3 epimerase family LNP58_12005 PF00583 Acetyltransferase (GNAT) family LNP58_12010 PF00781 Diacylglycerol kinase catalytic domain LNP58_12015 PF04715 Anthranilate synthase component I, N terminal region LNP58_12015 PF00425 chorismate binding enzyme LNP58_12035 PF00106 short chain dehydrogenase LNP58_12075 PF07759 Protein of unknown function (DUF1615) LNP58_12095 PF00892 EamA-like transporter family LNP58_12100 PF03330 Lytic transglycolase LNP58_12105 PF00041 Fibronectin type III domain LNP58_12105 PF00553 Cellulose binding domain LNP58_12105 PF01341 Glycosyl hydrolases family 6 LNP58_12115 PF00324 Amino acid permease LNP58_12125 PF01544 CorA-like Mg2+ transporter protein LNP58_12145 PF01204 Trehalase LNP58_12180 PF03707 Bacterial signalling protein N terminal repeat LNP58_12180 PF00563 EAL domain LNP58_12180 PF00990 Diguanylate cyclase, GGDEF domain LNP58_12195 PF00553 Cellulose binding domain LNP58_12195 PF00150 Cellulase (glycosyl hydrolase family 5) LNP58_12200 PF01740 STAS domain LNP58_12200 PF00916 Sulfate permease family LNP58_12225 PF13632 Glycosyl transferase family group 2 LNP58_12235 PF07694 5TMR of 5TMR-LYT LNP58_12235 PF06580 Histidine kinase LNP58_12240 PF04397 LytTr DNA-binding domain LNP58_12240 PF00072 Response regulator receiver domain LNP58_12245 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LNP58_12245 PF03900 Porphobilinogen deaminase, C-terminal domain LNP58_12270 PF00326 Prolyl oligopeptidase family LNP58_12270 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LNP58_12285 PF00155 Aminotransferase class I and II LNP58_12290 PF00326 Prolyl oligopeptidase family LNP58_12290 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LNP58_12305 PF01678 Diaminopimelate epimerase LNP58_12315 PF02899 Phage integrase, N-terminal SAM-like domain LNP58_12315 PF00589 Phage integrase family LNP58_12325 PF00227 Proteasome subunit LNP58_12330 PF07724 AAA domain (Cdc48 subfamily) LNP58_12330 PF10431 C-terminal, D2-small domain, of ClpB protein LNP58_12330 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_12345 PF11838 ERAP1-like C-terminal domain LNP58_12345 PF01433 Peptidase family M1 domain LNP58_12350 PF00990 Diguanylate cyclase, GGDEF domain LNP58_12350 PF08448 PAS fold LNP58_12355 PF01209 ubiE/COQ5 methyltransferase family LNP58_12365 PF13533 Biotin-lipoyl like LNP58_12375 PF13673 Acetyltransferase (GNAT) domain LNP58_12395 PF00294 pfkB family carbohydrate kinase LNP58_12405 PF04085 rod shape-determining protein MreC LNP58_12415 PF00905 Penicillin binding protein transpeptidase domain LNP58_12415 PF03717 Penicillin-binding Protein dimerisation domain LNP58_12420 PF01098 Cell cycle protein LNP58_12430 PF04717 Type VI secretion system, phage-baseplate injector LNP58_12435 PF01476 LysM domain LNP58_12435 PF05257 CHAP domain LNP58_12465 PF13406 Transglycosylase SLT domain LNP58_12470 PF03330 Lytic transglycolase LNP58_12470 PF05036 Sporulation related domain LNP58_12475 PF00768 D-alanyl-D-alanine carboxypeptidase LNP58_12475 PF07943 Penicillin-binding protein 5, C-terminal domain LNP58_12490 PF04359 Protein of unknown function (DUF493) LNP58_12495 PF03099 Biotin/lipoate A/B protein ligase family LNP58_12500 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LNP58_12500 PF04055 Radical SAM superfamily LNP58_12510 PF07669 Eco57I restriction-modification methylase LNP58_12510 PF12950 TaqI-like C-terminal specificity domain LNP58_12520 PF03572 Peptidase family S41 LNP58_12520 PF17804 Tail specific protease N-terminal domain LNP58_12520 PF00595 PDZ domain LNP58_12520 PF11818 C-terminal domain of tail specific protease (DUF3340) LNP58_12530 PF05598 Transposase domain (DUF772) LNP58_12540 PF01467 Cytidylyltransferase-like LNP58_12540 PF00293 NUDIX domain LNP58_12575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LNP58_12575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LNP58_12580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LNP58_12580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNP58_12585 PF04972 BON domain LNP58_12590 PF08446 PAS fold LNP58_12590 PF00360 Phytochrome region LNP58_12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_12590 PF01590 GAF domain LNP58_12590 PF00512 His Kinase A (phospho-acceptor) domain LNP58_12595 PF00072 Response regulator receiver domain LNP58_12600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_12600 PF00512 His Kinase A (phospho-acceptor) domain LNP58_12605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LNP58_12645 PF16355 Domain of unknown function (DUF4982) LNP58_12645 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LNP58_12645 PF00703 Glycosyl hydrolases family 2 LNP58_12645 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LNP58_12645 PF02837 Glycosyl hydrolases family 2, sugar binding domain LNP58_12660 PF00392 Bacterial regulatory proteins, gntR family LNP58_12660 PF07702 UTRA domain LNP58_12665 PF07690 Major Facilitator Superfamily LNP58_12670 PF00356 Bacterial regulatory proteins, lacI family LNP58_12675 PF01380 SIS domain LNP58_12680 PF01979 Amidohydrolase family LNP58_12690 PF00535 Glycosyl transferase family 2 LNP58_12695 PF01522 Polysaccharide deacetylase LNP58_12695 PF14883 Hypothetical glycosyl hydrolase family 13 LNP58_12735 PF01609 Transposase DDE domain LNP58_12735 PF05598 Transposase domain (DUF772) LNP58_12750 PF01966 HD domain LNP58_12750 PF01743 Poly A polymerase head domain LNP58_12750 PF12627 Probable RNA and SrmB- binding site of polymerase A LNP58_12785 PF05598 Transposase domain (DUF772) LNP58_12790 PF01609 Transposase DDE domain LNP58_12790 PF05598 Transposase domain (DUF772) LNP58_12795 PF05598 Transposase domain (DUF772) LNP58_12805 PF13291 ACT domain LNP58_12805 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_12810 PF05598 Transposase domain (DUF772) LNP58_12810 PF01609 Transposase DDE domain LNP58_12840 PF00034 Cytochrome c LNP58_12845 PF01926 50S ribosome-binding GTPase LNP58_12860 PF04107 Glutamate-cysteine ligase family 2(GCS2) LNP58_12895 PF16527 Two-component sensor protein CpxA, periplasmic domain LNP58_12895 PF00672 HAMP domain LNP58_12895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_12895 PF00512 His Kinase A (phospho-acceptor) domain LNP58_12900 PF00072 Response regulator receiver domain LNP58_12900 PF00486 Transcriptional regulatory protein, C terminal LNP58_12910 PF02583 Metal-sensitive transcriptional repressor LNP58_12915 PF08240 Alcohol dehydrogenase GroES-like domain LNP58_12915 PF00107 Zinc-binding dehydrogenase LNP58_12920 PF04828 Glutathione-dependent formaldehyde-activating enzyme LNP58_12925 PF00756 Putative esterase LNP58_12945 PF12848 ABC transporter LNP58_12945 PF00005 ABC transporter LNP58_12965 PF00464 Serine hydroxymethyltransferase LNP58_12975 PF03477 ATP cone domain LNP58_12985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LNP58_12985 PF01872 RibD C-terminal domain LNP58_12995 PF00677 Lumazine binding domain LNP58_13000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LNP58_13000 PF00925 GTP cyclohydrolase II LNP58_13005 PF00885 6,7-dimethyl-8-ribityllumazine synthase LNP58_13010 PF01029 NusB family LNP58_13015 PF00586 AIR synthase related protein, N-terminal domain LNP58_13015 PF02769 AIR synthase related protein, C-terminal domain LNP58_13035 PF03814 Potassium-transporting ATPase A subunit LNP58_13045 PF02669 K+-transporting ATPase, c chain LNP58_13050 PF02702 Osmosensitive K+ channel His kinase sensor domain LNP58_13050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_13050 PF13493 Domain of unknown function (DUF4118) LNP58_13050 PF13492 GAF domain LNP58_13050 PF00512 His Kinase A (phospho-acceptor) domain LNP58_13055 PF00072 Response regulator receiver domain LNP58_13055 PF00486 Transcriptional regulatory protein, C terminal LNP58_13060 PF01565 FAD binding domain LNP58_13060 PF02913 FAD linked oxidases, C-terminal domain LNP58_13065 PF04307 LexA-binding, inner membrane-associated putative hydrolase LNP58_13070 PF02021 Uncharacterised protein family UPF0102 LNP58_13080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNP58_13100 PF02381 MraZ protein, putative antitoxin-like LNP58_13105 PF01795 MraW methylase family LNP58_13110 PF04999 Cell division protein FtsL LNP58_13115 PF03717 Penicillin-binding Protein dimerisation domain LNP58_13115 PF00905 Penicillin binding protein transpeptidase domain LNP58_13120 PF01225 Mur ligase family, catalytic domain LNP58_13120 PF08245 Mur ligase middle domain LNP58_13120 PF02875 Mur ligase family, glutamate ligase domain LNP58_13125 PF01225 Mur ligase family, catalytic domain LNP58_13125 PF02875 Mur ligase family, glutamate ligase domain LNP58_13125 PF08245 Mur ligase middle domain LNP58_13130 PF00953 Glycosyl transferase family 4 LNP58_13135 PF01098 Cell cycle protein LNP58_13140 PF04101 Glycosyltransferase family 28 C-terminal domain LNP58_13140 PF03033 Glycosyltransferase family 28 N-terminal domain LNP58_13145 PF02875 Mur ligase family, glutamate ligase domain LNP58_13145 PF01225 Mur ligase family, catalytic domain LNP58_13145 PF08245 Mur ligase middle domain LNP58_13150 PF07478 D-ala D-ala ligase C-terminus LNP58_13150 PF01820 D-ala D-ala ligase N-terminus LNP58_13155 PF03799 Cell division protein FtsQ LNP58_13155 PF08478 POTRA domain, FtsQ-type LNP58_13160 PF02491 SHS2 domain inserted in FTSA LNP58_13165 PF12327 FtsZ family, C-terminal domain LNP58_13165 PF00091 Tubulin/FtsZ family, GTPase domain LNP58_13170 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LNP58_13180 PF01551 Peptidase family M23 LNP58_13180 PF01476 LysM domain LNP58_13185 PF02810 SEC-C motif LNP58_13185 PF07517 SecA DEAD-like domain LNP58_13185 PF01043 SecA preprotein cross-linking domain LNP58_13185 PF07516 SecA Wing and Scaffold domain LNP58_13195 PF00293 NUDIX domain LNP58_13210 PF02219 Methylenetetrahydrofolate reductase LNP58_13220 PF00550 Phosphopantetheine attachment site LNP58_13220 PF00698 Acyl transferase domain LNP58_13220 PF08240 Alcohol dehydrogenase GroES-like domain LNP58_13220 PF00107 Zinc-binding dehydrogenase LNP58_13220 PF16197 Ketoacyl-synthetase C-terminal extension LNP58_13220 PF00109 Beta-ketoacyl synthase, N-terminal domain LNP58_13220 PF02801 Beta-ketoacyl synthase, C-terminal domain LNP58_13220 PF08659 KR domain LNP58_13220 PF14765 Polyketide synthase dehydratase LNP58_13235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNP58_13275 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LNP58_13275 PF05221 S-adenosyl-L-homocysteine hydrolase LNP58_13285 PF00311 Phosphoenolpyruvate carboxylase LNP58_13315 PF00328 Histidine phosphatase superfamily (branch 2) LNP58_13325 PF02773 S-adenosylmethionine synthetase, C-terminal domain LNP58_13325 PF02772 S-adenosylmethionine synthetase, central domain LNP58_13325 PF00438 S-adenosylmethionine synthetase, N-terminal domain LNP58_13340 PF01207 Dihydrouridine synthase (Dus) LNP58_13350 PF00294 pfkB family carbohydrate kinase LNP58_13355 PF07670 Nucleoside recognition LNP58_13355 PF07662 Na+ dependent nucleoside transporter C-terminus LNP58_13355 PF01773 Na+ dependent nucleoside transporter N-terminus LNP58_13365 PF00248 Aldo/keto reductase family LNP58_13415 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LNP58_13425 PF00005 ABC transporter LNP58_13430 PF13472 GDSL-like Lipase/Acylhydrolase family LNP58_13435 PF00072 Response regulator receiver domain LNP58_13435 PF00486 Transcriptional regulatory protein, C terminal LNP58_13440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_13440 PF08521 Two-component sensor kinase N-terminal LNP58_13440 PF00512 His Kinase A (phospho-acceptor) domain LNP58_13455 PF01219 Prokaryotic diacylglycerol kinase LNP58_13475 PF01790 Prolipoprotein diacylglyceryl transferase LNP58_13480 PF00303 Thymidylate synthase LNP58_13490 PF00186 Dihydrofolate reductase LNP58_13495 PF00149 Calcineurin-like phosphoesterase LNP58_13500 PF04379 ApaG domain LNP58_13505 PF00398 Ribosomal RNA adenine dimethylase LNP58_13515 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LNP58_13520 PF09312 SurA N-terminal domain LNP58_13520 PF00639 PPIC-type PPIASE domain LNP58_13525 PF04453 LPS transport system D LNP58_13525 PF03968 OstA-like protein LNP58_13530 PF00850 Histone deacetylase domain LNP58_13535 PF01923 Cobalamin adenosyltransferase LNP58_13545 PF01494 FAD binding domain LNP58_13550 PF01494 FAD binding domain LNP58_13580 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LNP58_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_13590 PF03466 LysR substrate binding domain LNP58_13595 PF00501 AMP-binding enzyme LNP58_13595 PF13193 AMP-binding enzyme C-terminal domain LNP58_13600 PF00171 Aldehyde dehydrogenase family LNP58_13605 PF00378 Enoyl-CoA hydratase/isomerase LNP58_13625 PF08450 SMP-30/Gluconolactonase/LRE-like region LNP58_13630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LNP58_13630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LNP58_13635 PF18125 RlmM ferredoxin-like domain LNP58_13635 PF01728 FtsJ-like methyltransferase LNP58_13690 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LNP58_13690 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNP58_13705 PF00072 Response regulator receiver domain LNP58_13705 PF00990 Diguanylate cyclase, GGDEF domain LNP58_13755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNP58_13755 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_13760 PF00107 Zinc-binding dehydrogenase LNP58_13760 PF08240 Alcohol dehydrogenase GroES-like domain LNP58_13765 PF05736 OprF membrane domain LNP58_13765 PF00691 OmpA family LNP58_13775 PF00849 RNA pseudouridylate synthase LNP58_13785 PF00155 Aminotransferase class I and II LNP58_13795 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_13800 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_13805 PF00005 ABC transporter LNP58_13805 PF17850 CysA C-terminal regulatory domain LNP58_13805 PF12857 TOBE-like domain LNP58_13815 PF08240 Alcohol dehydrogenase GroES-like domain LNP58_13815 PF00107 Zinc-binding dehydrogenase LNP58_13830 PF10459 Peptidase S46 LNP58_13835 PF00300 Histidine phosphatase superfamily (branch 1) LNP58_13845 PF02875 Mur ligase family, glutamate ligase domain LNP58_13845 PF08245 Mur ligase middle domain LNP58_13860 PF00156 Phosphoribosyl transferase domain LNP58_13865 PF04305 Protein of unknown function (DUF455) LNP58_13885 PF00149 Calcineurin-like phosphoesterase LNP58_13890 PF01569 PAP2 superfamily LNP58_13895 PF13439 Glycosyltransferase Family 4 LNP58_13895 PF00534 Glycosyl transferases group 1 LNP58_13900 PF02541 Ppx/GppA phosphatase family LNP58_13905 PF02503 Polyphosphate kinase middle domain LNP58_13905 PF13090 Polyphosphate kinase C-terminal domain 2 LNP58_13905 PF17941 Polyphosphate kinase C-terminal domain 1 LNP58_13905 PF13089 Polyphosphate kinase N-terminal domain LNP58_13910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_13910 PF00512 His Kinase A (phospho-acceptor) domain LNP58_13910 PF00989 PAS fold LNP58_13910 PF11808 Phosphate regulon sensor protein PhoR LNP58_13915 PF00072 Response regulator receiver domain LNP58_13915 PF00486 Transcriptional regulatory protein, C terminal LNP58_13920 PF01435 Peptidase family M48 LNP58_13920 PF13181 Tetratricopeptide repeat LNP58_13925 PF00462 Glutaredoxin LNP58_13955 PF01625 Peptide methionine sulfoxide reductase LNP58_13980 PF00923 Transaldolase/Fructose-6-phosphate aldolase LNP58_13985 PF01272 Transcription elongation factor, GreA/GreB, C-term LNP58_13985 PF03449 Transcription elongation factor, N-terminal LNP58_13990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_13990 PF03466 LysR substrate binding domain LNP58_13995 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_13995 PF13192 Thioredoxin domain LNP58_14000 PF10417 C-terminal domain of 1-Cys peroxiredoxin LNP58_14000 PF00578 AhpC/TSA family LNP58_14005 PF05175 Methyltransferase small domain LNP58_14005 PF17827 PrmC N-terminal domain LNP58_14040 PF00561 alpha/beta hydrolase fold LNP58_14050 PF00293 NUDIX domain LNP58_14055 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LNP58_14055 PF00476 DNA polymerase family A LNP58_14055 PF01612 3'-5' exonuclease LNP58_14055 PF01367 5'-3' exonuclease, C-terminal SAM fold LNP58_14070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LNP58_14070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LNP58_14070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LNP58_14090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LNP58_14095 PF02233 NAD(P) transhydrogenase beta subunit LNP58_14120 PF01063 Amino-transferase class IV LNP58_14130 PF04073 Aminoacyl-tRNA editing domain LNP58_14140 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain LNP58_14140 PF17189 Glycosyl hydrolase family 30 beta sandwich domain LNP58_14155 PF03358 NADPH-dependent FMN reductase LNP58_14160 PF03631 Virulence factor BrkB LNP58_14165 PF08534 Redoxin LNP58_14170 PF00708 Acylphosphatase LNP58_14180 PF03976 Polyphosphate kinase 2 (PPK2) LNP58_14185 PF00994 Probable molybdopterin binding domain LNP58_14195 PF00472 RF-1 domain LNP58_14195 PF03462 PCRF domain LNP58_14200 PF01488 Shikimate / quinate 5-dehydrogenase LNP58_14200 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LNP58_14200 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LNP58_14210 PF03550 Outer membrane lipoprotein LolB LNP58_14215 PF08544 GHMP kinases C terminal LNP58_14215 PF00288 GHMP kinases N terminal domain LNP58_14225 PF14572 Phosphoribosyl synthetase-associated domain LNP58_14225 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LNP58_14230 PF14693 Ribosomal protein TL5, C-terminal domain LNP58_14230 PF01386 Ribosomal L25p family LNP58_14235 PF01195 Peptidyl-tRNA hydrolase LNP58_14240 PF01926 50S ribosome-binding GTPase LNP58_14240 PF06071 Protein of unknown function (DUF933) LNP58_14260 PF00009 Elongation factor Tu GTP binding domain LNP58_14260 PF03144 Elongation factor Tu domain 2 LNP58_14260 PF03143 Elongation factor Tu C-terminal domain LNP58_14270 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LNP58_14275 PF00467 KOW motif LNP58_14275 PF02357 Transcription termination factor nusG LNP58_14280 PF00298 Ribosomal protein L11, RNA binding domain LNP58_14280 PF03946 Ribosomal protein L11, N-terminal domain LNP58_14285 PF00687 Ribosomal protein L1p/L10e family LNP58_14290 PF00466 Ribosomal protein L10 LNP58_14295 PF00542 Ribosomal protein L7/L12 C-terminal domain LNP58_14295 PF16320 Ribosomal protein L7/L12 dimerisation domain LNP58_14300 PF10385 RNA polymerase beta subunit external 1 domain LNP58_14300 PF04565 RNA polymerase Rpb2, domain 3 LNP58_14300 PF04561 RNA polymerase Rpb2, domain 2 LNP58_14300 PF04563 RNA polymerase beta subunit LNP58_14300 PF00562 RNA polymerase Rpb2, domain 6 LNP58_14300 PF04560 RNA polymerase Rpb2, domain 7 LNP58_14305 PF04998 RNA polymerase Rpb1, domain 5 LNP58_14305 PF00623 RNA polymerase Rpb1, domain 2 LNP58_14305 PF04983 RNA polymerase Rpb1, domain 3 LNP58_14305 PF05000 RNA polymerase Rpb1, domain 4 LNP58_14305 PF04997 RNA polymerase Rpb1, domain 1 LNP58_14310 PF00164 Ribosomal protein S12/S23 LNP58_14315 PF00177 Ribosomal protein S7p/S5e LNP58_14320 PF00009 Elongation factor Tu GTP binding domain LNP58_14320 PF03144 Elongation factor Tu domain 2 LNP58_14320 PF03764 Elongation factor G, domain IV LNP58_14320 PF14492 Elongation Factor G, domain II LNP58_14320 PF00679 Elongation factor G C-terminus LNP58_14325 PF03144 Elongation factor Tu domain 2 LNP58_14325 PF03143 Elongation factor Tu C-terminal domain LNP58_14325 PF00009 Elongation factor Tu GTP binding domain LNP58_14335 PF00338 Ribosomal protein S10p/S20e LNP58_14340 PF00297 Ribosomal protein L3 LNP58_14345 PF00573 Ribosomal protein L4/L1 family LNP58_14350 PF00276 Ribosomal protein L23 LNP58_14355 PF00181 Ribosomal Proteins L2, RNA binding domain LNP58_14355 PF03947 Ribosomal Proteins L2, C-terminal domain LNP58_14360 PF00203 Ribosomal protein S19 LNP58_14365 PF00237 Ribosomal protein L22p/L17e LNP58_14370 PF00189 Ribosomal protein S3, C-terminal domain LNP58_14370 PF07650 KH domain LNP58_14375 PF00252 Ribosomal protein L16p/L10e LNP58_14380 PF00831 Ribosomal L29 protein LNP58_14385 PF00366 Ribosomal protein S17 LNP58_14390 PF00238 Ribosomal protein L14p/L23e LNP58_14395 PF00467 KOW motif LNP58_14395 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LNP58_14400 PF00281 Ribosomal protein L5 LNP58_14400 PF00673 ribosomal L5P family C-terminus LNP58_14405 PF00253 Ribosomal protein S14p/S29e LNP58_14410 PF00410 Ribosomal protein S8 LNP58_14415 PF00347 Ribosomal protein L6 LNP58_14420 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LNP58_14425 PF00333 Ribosomal protein S5, N-terminal domain LNP58_14425 PF03719 Ribosomal protein S5, C-terminal domain LNP58_14430 PF00327 Ribosomal protein L30p/L7e LNP58_14435 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LNP58_14440 PF00344 SecY translocase LNP58_14445 PF00416 Ribosomal protein S13/S18 LNP58_14450 PF00411 Ribosomal protein S11 LNP58_14455 PF00163 Ribosomal protein S4/S9 N-terminal domain LNP58_14455 PF01479 S4 domain LNP58_14460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LNP58_14460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LNP58_14460 PF01000 RNA polymerase Rpb3/RpoA insert domain LNP58_14465 PF01196 Ribosomal protein L17 LNP58_14515 PF02347 Glycine cleavage system P-protein LNP58_14535 PF03412 Peptidase C39 family LNP58_14535 PF00005 ABC transporter LNP58_14535 PF00664 ABC transporter transmembrane region LNP58_14555 PF00884 Sulfatase LNP58_14555 PF08019 Phosphoethanolamine transferase EptA/EptB LNP58_14565 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LNP58_14570 PF00486 Transcriptional regulatory protein, C terminal LNP58_14570 PF00072 Response regulator receiver domain LNP58_14575 PF00512 His Kinase A (phospho-acceptor) domain LNP58_14575 PF08521 Two-component sensor kinase N-terminal LNP58_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_14585 PF03776 Septum formation topological specificity factor MinE LNP58_14590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LNP58_14595 PF05209 Septum formation inhibitor MinC, N-terminal domain LNP58_14595 PF03775 Septum formation inhibitor MinC, C-terminal domain LNP58_14605 PF07730 Histidine kinase LNP58_14610 PF00072 Response regulator receiver domain LNP58_14610 PF00196 Bacterial regulatory proteins, luxR family LNP58_14625 PF00730 HhH-GPD superfamily base excision DNA repair protein LNP58_14650 PF02222 ATP-grasp domain LNP58_14655 PF01527 Transposase LNP58_14680 PF06744 Type VI secretion protein IcmF C-terminal LNP58_14680 PF06761 Intracellular multiplication and human macrophage-killing LNP58_14680 PF14331 ImcF-related N-terminal domain LNP58_14690 PF00691 OmpA family LNP58_14690 PF04972 BON domain LNP58_14705 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14705 PF06715 Gp5 C-terminal repeat (3 copies) LNP58_14715 PF03781 Sulfatase-modifying factor enzyme 1 LNP58_14725 PF03781 Sulfatase-modifying factor enzyme 1 LNP58_14790 PF03781 Sulfatase-modifying factor enzyme 1 LNP58_14795 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14820 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_14820 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_14820 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14865 PF01609 Transposase DDE domain LNP58_14865 PF05598 Transposase domain (DUF772) LNP58_14875 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_14875 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_14875 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14890 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_14890 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14890 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_14905 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_14905 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_14905 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14920 PF00182 Chitinase class I LNP58_14925 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14925 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_14925 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_14950 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LNP58_14950 PF04717 Type VI secretion system, phage-baseplate injector LNP58_14950 PF13296 Putative type VI secretion system Rhs element Vgr LNP58_14975 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LNP58_14980 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LNP58_14995 PF05947 Type VI secretion system, TssF LNP58_15005 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_15005 PF07724 AAA domain (Cdc48 subfamily) LNP58_15005 PF17871 AAA lid domain LNP58_15005 PF10431 C-terminal, D2-small domain, of ClpB protein LNP58_15015 PF04717 Type VI secretion system, phage-baseplate injector LNP58_15015 PF06715 Gp5 C-terminal repeat (3 copies) LNP58_15080 PF01420 Type I restriction modification DNA specificity domain LNP58_15085 PF02384 N-6 DNA Methylase LNP58_15095 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNP58_15095 PF00271 Helicase conserved C-terminal domain LNP58_15095 PF08463 EcoEI R protein C-terminal LNP58_15095 PF04851 Type III restriction enzyme, res subunit LNP58_15115 PF02384 N-6 DNA Methylase LNP58_15120 PF08780 Nucleotidyltransferase substrate binding protein like LNP58_15125 PF01909 Nucleotidyltransferase domain LNP58_15140 PF11867 Domain of unknown function (DUF3387) LNP58_15140 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LNP58_15140 PF18766 SWI2/SNF2 ATPase LNP58_15170 PF13456 Reverse transcriptase-like LNP58_15170 PF00300 Histidine phosphatase superfamily (branch 1) LNP58_15180 PF05598 Transposase domain (DUF772) LNP58_15180 PF01609 Transposase DDE domain LNP58_15205 PF01726 LexA DNA binding domain LNP58_15205 PF00717 Peptidase S24-like LNP58_15225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNP58_15225 PF02811 PHP domain LNP58_15225 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNP58_15225 PF14579 Helix-hairpin-helix motif LNP58_15240 PF03169 OPT oligopeptide transporter protein LNP58_15245 PF01609 Transposase DDE domain LNP58_15245 PF05598 Transposase domain (DUF772) LNP58_15265 PF00326 Prolyl oligopeptidase family LNP58_15265 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LNP58_15265 PF07676 WD40-like Beta Propeller Repeat LNP58_15295 PF12833 Helix-turn-helix domain LNP58_15295 PF02311 AraC-like ligand binding domain LNP58_15320 PF05598 Transposase domain (DUF772) LNP58_15345 PF06628 Catalase-related immune-responsive LNP58_15345 PF00199 Catalase LNP58_15345 PF18011 C-terminal domain found in long catalases LNP58_15375 PF00162 Phosphoglycerate kinase LNP58_15380 PF13419 Haloacid dehalogenase-like hydrolase LNP58_15385 PF00224 Pyruvate kinase, barrel domain LNP58_15385 PF02887 Pyruvate kinase, alpha/beta domain LNP58_15390 PF00274 Fructose-bisphosphate aldolase class-I LNP58_15395 PF01661 Macro domain LNP58_15405 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_15410 PF10414 Sirohaem synthase dimerisation region LNP58_15410 PF14824 Sirohaem biosynthesis protein central LNP58_15410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNP58_15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_15415 PF03466 LysR substrate binding domain LNP58_15440 PF00672 HAMP domain LNP58_15440 PF00512 His Kinase A (phospho-acceptor) domain LNP58_15440 PF01627 Hpt domain LNP58_15440 PF00072 Response regulator receiver domain LNP58_15440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_15460 PF01507 Phosphoadenosine phosphosulfate reductase family LNP58_15465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LNP58_15465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LNP58_15470 PF00667 FAD binding domain LNP58_15470 PF00258 Flavodoxin LNP58_15470 PF00175 Oxidoreductase NAD-binding domain LNP58_15475 PF01507 Phosphoadenosine phosphosulfate reductase family LNP58_15480 PF00009 Elongation factor Tu GTP binding domain LNP58_15485 PF00529 HlyD membrane-fusion protein of T1SS LNP58_15485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_15490 PF00873 AcrB/AcrD/AcrF family LNP58_15495 PF01433 Peptidase family M1 domain LNP58_15495 PF11838 ERAP1-like C-terminal domain LNP58_15515 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNP58_15515 PF00588 SpoU rRNA Methylase family LNP58_15520 PF00135 Carboxylesterase family LNP58_15540 PF01741 Large-conductance mechanosensitive channel, MscL LNP58_15545 PF01557 Fumarylacetoacetate (FAA) hydrolase family LNP58_15570 PF03600 Citrate transporter LNP58_15570 PF02080 TrkA-C domain LNP58_15575 PF02390 Putative methyltransferase LNP58_15580 PF05690 Thiazole biosynthesis protein ThiG LNP58_15590 PF03797 Autotransporter beta-domain LNP58_15590 PF00657 GDSL-like Lipase/Acylhydrolase LNP58_15725 PF00085 Thioredoxin LNP58_15735 PF00133 tRNA synthetases class I (I, L, M and V) LNP58_15735 PF13603 Leucyl-tRNA synthetase, Domain 2 LNP58_15735 PF08264 Anticodon-binding domain of tRNA LNP58_15750 PF01467 Cytidylyltransferase-like LNP58_15775 PF02590 Predicted SPOUT methyltransferase LNP58_15800 PF04402 Protein of unknown function (DUF541) LNP58_15805 PF02545 Maf-like protein LNP58_15810 PF10150 Ribonuclease E/G family LNP58_15810 PF00575 S1 RNA binding domain LNP58_15815 PF13116 Protein of unknown function LNP58_15815 PF13502 AsmA-like C-terminal region LNP58_15825 PF01523 Putative modulator of DNA gyrase LNP58_15830 PF04751 Protein of unknown function (DUF615) LNP58_15835 PF01523 Putative modulator of DNA gyrase LNP58_15860 PF00348 Polyprenyl synthetase LNP58_15865 PF02609 Exonuclease VII small subunit LNP58_15870 PF01171 PP-loop family LNP58_15870 PF09179 TilS substrate binding domain LNP58_15870 PF11734 TilS substrate C-terminal domain LNP58_15875 PF00245 Alkaline phosphatase LNP58_15900 PF00877 NlpC/P60 family LNP58_15905 PF00877 NlpC/P60 family LNP58_15910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNP58_15915 PF04235 Protein of unknown function (DUF418) LNP58_15920 PF01266 FAD dependent oxidoreductase LNP58_15960 PF10609 NUBPL iron-transfer P-loop NTPase LNP58_15965 PF00692 dUTPase LNP58_15990 PF00919 Uncharacterized protein family UPF0004 LNP58_15990 PF18693 TRAM domain LNP58_15990 PF04055 Radical SAM superfamily LNP58_15995 PF03449 Transcription elongation factor, N-terminal LNP58_15995 PF01272 Transcription elongation factor, GreA/GreB, C-term LNP58_16030 PF02666 Phosphatidylserine decarboxylase LNP58_16035 PF02630 SCO1/SenC LNP58_16040 PF05175 Methyltransferase small domain LNP58_16045 PF01264 Chorismate synthase LNP58_16050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNP58_16050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNP58_16055 PF02774 Semialdehyde dehydrogenase, dimerisation domain LNP58_16055 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNP58_16075 PF01416 tRNA pseudouridine synthase LNP58_16080 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LNP58_16085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_16085 PF03466 LysR substrate binding domain LNP58_16090 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_16100 PF00290 Tryptophan synthase alpha chain LNP58_16105 PF17848 Acetyl-coA carboxylase zinc finger domain LNP58_16105 PF01039 Carboxyl transferase domain LNP58_16110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LNP58_16110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LNP58_16110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LNP58_16110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LNP58_16125 PF00563 EAL domain LNP58_16125 PF00990 Diguanylate cyclase, GGDEF domain LNP58_16125 PF03707 Bacterial signalling protein N terminal repeat LNP58_16160 PF00121 Triosephosphate isomerase LNP58_16175 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LNP58_16180 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LNP58_16185 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LNP58_16190 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LNP58_16200 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LNP58_16200 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LNP58_16200 PF10531 SLBB domain LNP58_16205 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LNP58_16205 PF00384 Molybdopterin oxidoreductase LNP58_16205 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LNP58_16210 PF00146 NADH dehydrogenase LNP58_16215 PF12838 4Fe-4S dicluster domain LNP58_16220 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LNP58_16225 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LNP58_16230 PF00361 Proton-conducting membrane transporter LNP58_16230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LNP58_16235 PF00361 Proton-conducting membrane transporter LNP58_16235 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LNP58_16240 PF00361 Proton-conducting membrane transporter LNP58_16250 PF17384 RimP C-terminal SH3 domain LNP58_16250 PF02576 RimP N-terminal domain LNP58_16255 PF08529 NusA N-terminal domain LNP58_16255 PF00575 S1 RNA binding domain LNP58_16255 PF13184 NusA-like KH domain LNP58_16260 PF11987 Translation-initiation factor 2 LNP58_16260 PF08364 Bacterial translation initiation factor IF-2 associated region LNP58_16260 PF04760 Translation initiation factor IF-2, N-terminal region LNP58_16260 PF00009 Elongation factor Tu GTP binding domain LNP58_16265 PF02033 Ribosome-binding factor A LNP58_16270 PF09157 Pseudouridine synthase II TruB, C-terminal LNP58_16270 PF16198 tRNA pseudouridylate synthase B C-terminal domain LNP58_16270 PF01509 TruB family pseudouridylate synthase (N terminal domain) LNP58_16275 PF00312 Ribosomal protein S15 LNP58_16280 PF00575 S1 RNA binding domain LNP58_16280 PF03725 3' exoribonuclease family, domain 2 LNP58_16280 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LNP58_16280 PF01138 3' exoribonuclease family, domain 1 LNP58_16280 PF00013 KH domain LNP58_16290 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LNP58_16290 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LNP58_16300 PF00731 AIR carboxylase LNP58_16305 PF02222 ATP-grasp domain LNP58_16305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LNP58_16310 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNP58_16310 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNP58_16315 PF00462 Glutaredoxin LNP58_16325 PF01914 MarC family integral membrane protein LNP58_16335 PF00593 TonB dependent receptor LNP58_16340 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LNP58_16340 PF11892 Domain of unknown function (DUF3412) LNP58_16340 PF03641 Possible lysine decarboxylase LNP58_16345 PF07963 Prokaryotic N-terminal methylation motif LNP58_16345 PF12019 Type II transport protein GspH LNP58_16365 PF05567 Neisseria PilC beta-propeller domain LNP58_16370 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LNP58_16370 PF07963 Prokaryotic N-terminal methylation motif LNP58_16380 PF07963 Prokaryotic N-terminal methylation motif LNP58_16380 PF00114 Pilin (bacterial filament) LNP58_16385 PF17757 UvrB interaction domain LNP58_16385 PF04851 Type III restriction enzyme, res subunit LNP58_16385 PF00271 Helicase conserved C-terminal domain LNP58_16385 PF12344 Ultra-violet resistance protein B LNP58_16385 PF02151 UvrB/uvrC motif LNP58_16415 PF03129 Anticodon binding domain LNP58_16415 PF02824 TGS domain LNP58_16415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNP58_16415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNP58_16420 PF00707 Translation initiation factor IF-3, C-terminal domain LNP58_16420 PF05198 Translation initiation factor IF-3, N-terminal domain LNP58_16425 PF01632 Ribosomal protein L35 LNP58_16430 PF00453 Ribosomal protein L20 LNP58_16435 PF01409 tRNA synthetases class II core domain (F) LNP58_16435 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LNP58_16440 PF03483 B3/4 domain LNP58_16440 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LNP58_16440 PF01588 Putative tRNA binding domain LNP58_16440 PF03147 Ferredoxin-fold anticodon binding domain LNP58_16440 PF03484 tRNA synthetase B5 domain LNP58_16445 PF00216 Bacterial DNA-binding protein LNP58_16450 PF13411 MerR HTH family regulatory protein LNP58_16470 PF02397 Bacterial sugar transferase LNP58_16490 PF13439 Glycosyltransferase Family 4 LNP58_16490 PF00534 Glycosyl transferases group 1 LNP58_16500 PF14667 Polysaccharide biosynthesis C-terminal domain LNP58_16515 PF03808 Glycosyl transferase WecB/TagA/CpsF family LNP58_16545 PF08212 Lipocalin-like domain LNP58_16630 PF00072 Response regulator receiver domain LNP58_16630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_16630 PF13426 PAS domain LNP58_16635 PF04362 Bacterial Fe(2+) trafficking LNP58_16640 PF00633 Helix-hairpin-helix motif LNP58_16640 PF14815 NUDIX domain LNP58_16640 PF00730 HhH-GPD superfamily base excision DNA repair protein LNP58_16650 PF00448 SRP54-type protein, GTPase domain LNP58_16650 PF02881 SRP54-type protein, helical bundle domain LNP58_16660 PF05544 Proline racemase LNP58_16665 PF01266 FAD dependent oxidoreductase LNP58_16675 PF04324 BFD-like [2Fe-2S] binding domain LNP58_16675 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_16680 PF00701 Dihydrodipicolinate synthetase family LNP58_16685 PF00171 Aldehyde dehydrogenase family LNP58_16690 PF01321 Creatinase/Prolidase N-terminal domain LNP58_16690 PF00557 Metallopeptidase family M24 LNP58_16705 PF13520 Amino acid permease LNP58_16725 PF00082 Subtilase family LNP58_16725 PF09286 Pro-kumamolisin, activation domain LNP58_16735 PF00593 TonB dependent receptor LNP58_16735 PF07715 TonB-dependent Receptor Plug Domain LNP58_16740 PF07532 Bacterial Ig-like domain (group 4) LNP58_16745 PF04616 Glycosyl hydrolases family 43 LNP58_16820 PF00994 Probable molybdopterin binding domain LNP58_16820 PF03454 MoeA C-terminal region (domain IV) LNP58_16820 PF03453 MoeA N-terminal region (domain I and II) LNP58_16825 PF12804 MobA-like NTP transferase domain LNP58_16850 PF10414 Sirohaem synthase dimerisation region LNP58_16850 PF14824 Sirohaem biosynthesis protein central LNP58_16850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LNP58_16885 PF05598 Transposase domain (DUF772) LNP58_16885 PF01609 Transposase DDE domain LNP58_16890 PF01609 Transposase DDE domain LNP58_16890 PF05598 Transposase domain (DUF772) LNP58_16915 PF01648 4'-phosphopantetheinyl transferase superfamily LNP58_16915 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LNP58_16925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNP58_16925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNP58_16925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNP58_16935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNP58_16945 PF05598 Transposase domain (DUF772) LNP58_16945 PF01609 Transposase DDE domain LNP58_16950 PF00581 Rhodanese-like domain LNP58_16950 PF17773 UPF0176 acylphosphatase like domain LNP58_16955 PF00072 Response regulator receiver domain LNP58_16955 PF00196 Bacterial regulatory proteins, luxR family LNP58_16965 PF10150 Ribonuclease E/G family LNP58_16965 PF12111 Polyribonucleotide phosphorylase C terminal LNP58_16965 PF00575 S1 RNA binding domain LNP58_16970 PF00849 RNA pseudouridylate synthase LNP58_16970 PF01479 S4 domain LNP58_16975 PF11737 Protein of unknown function (DUF3300) LNP58_16990 PF01329 Pterin 4 alpha carbinolamine dehydratase LNP58_16995 PF01106 NifU-like domain LNP58_17045 PF01609 Transposase DDE domain LNP58_17045 PF05598 Transposase domain (DUF772) LNP58_17060 PF01609 Transposase DDE domain LNP58_17060 PF05598 Transposase domain (DUF772) LNP58_17070 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LNP58_17075 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LNP58_17080 PF05638 Type VI secretion system effector, Hcp LNP58_17085 PF07024 ImpE protein LNP58_17090 PF04965 Gene 25-like lysozyme LNP58_17095 PF05947 Type VI secretion system, TssF LNP58_17105 PF10431 C-terminal, D2-small domain, of ClpB protein LNP58_17105 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_17105 PF07724 AAA domain (Cdc48 subfamily) LNP58_17105 PF17871 AAA lid domain LNP58_17130 PF06715 Gp5 C-terminal repeat (3 copies) LNP58_17130 PF04717 Type VI secretion system, phage-baseplate injector LNP58_17145 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LNP58_17155 PF06761 Intracellular multiplication and human macrophage-killing LNP58_17155 PF14331 ImcF-related N-terminal domain LNP58_17155 PF06744 Type VI secretion protein IcmF C-terminal LNP58_17170 PF00069 Protein kinase domain LNP58_17190 PF06812 ImpA, N-terminal, type VI secretion system LNP58_17195 PF03466 LysR substrate binding domain LNP58_17195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_17200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_17200 PF00512 His Kinase A (phospho-acceptor) domain LNP58_17205 PF03150 Di-haem cytochrome c peroxidase LNP58_17205 PF00034 Cytochrome c LNP58_17210 PF00072 Response regulator receiver domain LNP58_17210 PF00486 Transcriptional regulatory protein, C terminal LNP58_17260 PF00529 HlyD membrane-fusion protein of T1SS LNP58_17260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_17285 PF03377 TAL effector repeat LNP58_17300 PF03377 TAL effector repeat LNP58_17315 PF03377 TAL effector repeat LNP58_17325 PF03918 Cytochrome C biogenesis protein LNP58_17330 PF08534 Redoxin LNP58_17335 PF01578 Cytochrome C assembly protein LNP58_17335 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LNP58_17340 PF03100 CcmE LNP58_17345 PF04995 Heme exporter protein D (CcmD) LNP58_17350 PF01578 Cytochrome C assembly protein LNP58_17355 PF00082 Subtilase family LNP58_17365 PF04542 Sigma-70 region 2 LNP58_17365 PF08281 Sigma-70, region 4 LNP58_17375 PF00034 Cytochrome c LNP58_17390 PF05523 WxcM-like, C-terminal LNP58_17410 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNP58_17415 PF01943 Polysaccharide biosynthesis protein LNP58_17420 PF00535 Glycosyl transferase family 2 LNP58_17435 PF08241 Methyltransferase domain LNP58_17455 PF13579 Glycosyl transferase 4-like domain LNP58_17455 PF00534 Glycosyl transferases group 1 LNP58_17475 PF00005 ABC transporter LNP58_17480 PF00005 ABC transporter LNP58_17480 PF00664 ABC transporter transmembrane region LNP58_17490 PF07690 Major Facilitator Superfamily LNP58_17500 PF00296 Luciferase-like monooxygenase LNP58_17515 PF01595 Cyclin M transmembrane N-terminal domain LNP58_17515 PF00571 CBS domain LNP58_17515 PF03471 Transporter associated domain LNP58_17525 PF01384 Phosphate transporter family LNP58_17530 PF02698 DUF218 domain LNP58_17545 PF00204 DNA gyrase B LNP58_17545 PF00986 DNA gyrase B subunit, carboxyl terminus LNP58_17545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_17545 PF01751 Toprim domain LNP58_17555 PF06418 CTP synthase N-terminus LNP58_17555 PF00117 Glutamine amidotransferase class-I LNP58_17560 PF00793 DAHP synthetase I family LNP58_17570 PF00113 Enolase, C-terminal TIM barrel domain LNP58_17570 PF03952 Enolase, N-terminal domain LNP58_17575 PF04977 Septum formation initiator LNP58_17580 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LNP58_17590 PF02542 YgbB family LNP58_17595 PF01142 tRNA pseudouridine synthase D (TruD) LNP58_17600 PF01713 Smr domain LNP58_17605 PF01975 Survival protein SurE LNP58_17615 PF09335 SNARE associated Golgi protein LNP58_17620 PF01476 LysM domain LNP58_17620 PF01551 Peptidase family M23 LNP58_17630 PF01985 CRS1 / YhbY (CRM) domain LNP58_17635 PF01728 FtsJ-like methyltransferase LNP58_17640 PF06480 FtsH Extracellular LNP58_17640 PF01434 Peptidase family M41 LNP58_17640 PF17862 AAA+ lid domain LNP58_17640 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_17645 PF00809 Pterin binding enzyme LNP58_17655 PF17209 Hfq protein LNP58_17660 PF01926 50S ribosome-binding GTPase LNP58_17660 PF16360 GTP-binding GTPase Middle Region LNP58_17660 PF13167 GTP-binding GTPase N-terminal LNP58_17665 PF02464 Competence-damaged protein LNP58_17670 PF03109 ABC1 family LNP58_17675 PF00717 Peptidase S24-like LNP58_17675 PF01726 LexA DNA binding domain LNP58_17680 PF00154 recA bacterial DNA recombination protein LNP58_17685 PF02631 RecX family LNP58_17690 PF02272 DHHA1 domain LNP58_17690 PF01411 tRNA synthetases class II (A) LNP58_17690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LNP58_17695 PF02599 Global regulator protein family LNP58_17715 PF03796 DnaB-like helicase C terminal domain LNP58_17715 PF00772 DnaB-like helicase N terminal domain LNP58_17735 PF02678 Pirin LNP58_17735 PF17954 Quercetinase C-terminal cupin domain LNP58_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_17740 PF03466 LysR substrate binding domain LNP58_17765 PF08543 Phosphomethylpyrimidine kinase LNP58_17775 PF02562 PhoH-like protein LNP58_17775 PF13638 PIN domain LNP58_17780 PF00578 AhpC/TSA family LNP58_17795 PF00701 Dihydrodipicolinate synthetase family LNP58_17805 PF11953 Domain of unknown function (DUF3470) LNP58_17805 PF00037 4Fe-4S binding domain LNP58_17810 PF05035 2-keto-3-deoxy-galactonokinase LNP58_17815 PF08450 SMP-30/Gluconolactonase/LRE-like region LNP58_17820 PF13378 Enolase C-terminal domain-like LNP58_17820 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LNP58_17825 PF01081 KDPG and KHG aldolase LNP58_17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_17830 PF03466 LysR substrate binding domain LNP58_17840 PF17137 Domain of unknown function (DUF5110) LNP58_17840 PF16338 Domain of unknown function (DUF4968) LNP58_17840 PF01055 Glycosyl hydrolases family 31 LNP58_17850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LNP58_17850 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LNP58_17860 PF00083 Sugar (and other) transporter LNP58_17880 PF09285 Elongation factor P, C-terminal LNP58_17880 PF08207 Elongation factor P (EF-P) KOW-like domain LNP58_17880 PF01132 Elongation factor P (EF-P) OB domain LNP58_17885 PF00106 short chain dehydrogenase LNP58_17890 PF00682 HMGL-like LNP58_17900 PF00378 Enoyl-CoA hydratase/isomerase LNP58_17910 PF07664 Ferrous iron transport protein B C terminus LNP58_17910 PF02421 Ferrous iron transport protein B LNP58_17910 PF07670 Nucleoside recognition LNP58_17925 PF00155 Aminotransferase class I and II LNP58_17930 PF03475 3-alpha domain LNP58_17930 PF03473 MOSC domain LNP58_17940 PF05173 Dihydrodipicolinate reductase, C-terminus LNP58_17940 PF01113 Dihydrodipicolinate reductase, N-terminus LNP58_17945 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LNP58_17945 PF00117 Glutamine amidotransferase class-I LNP58_17955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LNP58_17955 PF02142 MGS-like domain LNP58_17955 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LNP58_17960 PF01272 Transcription elongation factor, GreA/GreB, C-term LNP58_17960 PF03449 Transcription elongation factor, N-terminal LNP58_17970 PF17768 RecJ OB domain LNP58_17970 PF01368 DHH family LNP58_17970 PF02272 DHHA1 domain LNP58_18020 PF01336 OB-fold nucleic acid binding domain LNP58_18020 PF00152 tRNA synthetases class II (D, K and N) LNP58_18025 PF00072 Response regulator receiver domain LNP58_18030 PF00512 His Kinase A (phospho-acceptor) domain LNP58_18030 PF00072 Response regulator receiver domain LNP58_18030 PF01627 Hpt domain LNP58_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_18035 PF00378 Enoyl-CoA hydratase/isomerase LNP58_18040 PF00501 AMP-binding enzyme LNP58_18040 PF13193 AMP-binding enzyme C-terminal domain LNP58_18050 PF00330 Aconitase family (aconitate hydratase) LNP58_18050 PF00694 Aconitase C-terminal domain LNP58_18065 PF00330 Aconitase family (aconitate hydratase) LNP58_18065 PF06434 Aconitate hydratase 2 N-terminus LNP58_18065 PF11791 Aconitate B N-terminal domain LNP58_18070 PF00561 alpha/beta hydrolase fold LNP58_18080 PF00563 EAL domain LNP58_18080 PF00990 Diguanylate cyclase, GGDEF domain LNP58_18080 PF03707 Bacterial signalling protein N terminal repeat LNP58_18085 PF01339 CheB methylesterase LNP58_18085 PF00072 Response regulator receiver domain LNP58_18090 PF03975 CheD chemotactic sensory transduction LNP58_18095 PF01739 CheR methyltransferase, SAM binding domain LNP58_18095 PF03705 CheR methyltransferase, all-alpha domain LNP58_18100 PF00672 HAMP domain LNP58_18100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18100 PF02203 Tar ligand binding domain homologue LNP58_18120 PF01584 CheW-like domain LNP58_18125 PF07317 Flagellar regulator YcgR LNP58_18125 PF07238 PilZ domain LNP58_18135 PF02203 Tar ligand binding domain homologue LNP58_18135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18135 PF00672 HAMP domain LNP58_18140 PF02203 Tar ligand binding domain homologue LNP58_18140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18140 PF00672 HAMP domain LNP58_18145 PF02203 Tar ligand binding domain homologue LNP58_18145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18145 PF00672 HAMP domain LNP58_18150 PF00672 HAMP domain LNP58_18150 PF02203 Tar ligand binding domain homologue LNP58_18150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18160 PF02203 Tar ligand binding domain homologue LNP58_18160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18160 PF00672 HAMP domain LNP58_18170 PF00672 HAMP domain LNP58_18170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_18170 PF02203 Tar ligand binding domain homologue LNP58_18195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_18195 PF01584 CheW-like domain LNP58_18195 PF09078 CheY binding LNP58_18195 PF02895 Signal transducing histidine kinase, homodimeric domain LNP58_18195 PF01627 Hpt domain LNP58_18200 PF00072 Response regulator receiver domain LNP58_18210 PF01584 CheW-like domain LNP58_18215 PF13614 AAA domain LNP58_18220 PF13677 Membrane MotB of proton-channel complex MotA/MotB LNP58_18220 PF00691 OmpA family LNP58_18225 PF01618 MotA/TolQ/ExbB proton channel family LNP58_18235 PF00593 TonB dependent receptor LNP58_18235 PF07715 TonB-dependent Receptor Plug Domain LNP58_18245 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNP58_18245 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNP58_18255 PF00593 TonB dependent receptor LNP58_18255 PF07715 TonB-dependent Receptor Plug Domain LNP58_18280 PF01609 Transposase DDE domain LNP58_18280 PF05598 Transposase domain (DUF772) LNP58_18325 PF04717 Type VI secretion system, phage-baseplate injector LNP58_18345 PF06715 Gp5 C-terminal repeat (3 copies) LNP58_18345 PF04717 Type VI secretion system, phage-baseplate injector LNP58_18390 PF05598 Transposase domain (DUF772) LNP58_18390 PF01609 Transposase DDE domain LNP58_18405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LNP58_18410 PF00294 pfkB family carbohydrate kinase LNP58_18415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LNP58_18415 PF00381 PTS HPr component phosphorylation site LNP58_18415 PF02896 PEP-utilising enzyme, TIM barrel domain LNP58_18415 PF00391 PEP-utilising enzyme, mobile domain LNP58_18415 PF05524 PEP-utilising enzyme, N-terminal LNP58_18420 PF00356 Bacterial regulatory proteins, lacI family LNP58_18440 PF00873 AcrB/AcrD/AcrF family LNP58_18445 PF00529 HlyD membrane-fusion protein of T1SS LNP58_18445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_18455 PF05088 Bacterial NAD-glutamate dehydrogenase LNP58_18460 PF01609 Transposase DDE domain LNP58_18460 PF05598 Transposase domain (DUF772) LNP58_18465 PF00072 Response regulator receiver domain LNP58_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_18470 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNP58_18470 PF00072 Response regulator receiver domain LNP58_18470 PF01627 Hpt domain LNP58_18470 PF00512 His Kinase A (phospho-acceptor) domain LNP58_18470 PF00672 HAMP domain LNP58_18475 PF04286 Protein of unknown function (DUF445) LNP58_18485 PF00005 ABC transporter LNP58_18490 PF00202 Aminotransferase class-III LNP58_18495 PF07690 Major Facilitator Superfamily LNP58_18500 PF02634 FdhD/NarQ family LNP58_18505 PF00384 Molybdopterin oxidoreductase LNP58_18515 PF07690 Major Facilitator Superfamily LNP58_18515 PF00083 Sugar (and other) transporter LNP58_18520 PF00990 Diguanylate cyclase, GGDEF domain LNP58_18520 PF00072 Response regulator receiver domain LNP58_18525 PF01266 FAD dependent oxidoreductase LNP58_18530 PF00120 Glutamine synthetase, catalytic domain LNP58_18540 PF00120 Glutamine synthetase, catalytic domain LNP58_18550 PF13533 Biotin-lipoyl like LNP58_18555 PF07690 Major Facilitator Superfamily LNP58_18560 PF02321 Outer membrane efflux protein LNP58_18565 PF08402 TOBE domain LNP58_18565 PF00005 ABC transporter LNP58_18585 PF00171 Aldehyde dehydrogenase family LNP58_18600 PF00571 CBS domain LNP58_18600 PF03471 Transporter associated domain LNP58_18610 PF02130 Uncharacterized protein family UPF0054 LNP58_18620 PF02562 PhoH-like protein LNP58_18630 PF04055 Radical SAM superfamily LNP58_18630 PF01938 TRAM domain LNP58_18630 PF00919 Uncharacterized protein family UPF0004 LNP58_18650 PF01464 Transglycosylase SLT domain LNP58_18655 PF00355 Rieske [2Fe-2S] domain LNP58_18655 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LNP58_18660 PF00032 Cytochrome b(C-terminal)/b6/petD LNP58_18660 PF00033 Cytochrome b/b6/petB LNP58_18665 PF02167 Cytochrome C1 family LNP58_18670 PF02798 Glutathione S-transferase, N-terminal domain LNP58_18670 PF00043 Glutathione S-transferase, C-terminal domain LNP58_18675 PF04386 Stringent starvation protein B LNP58_18700 PF02245 Methylpurine-DNA glycosylase (MPG) LNP58_18710 PF00872 Transposase, Mutator family LNP58_18720 PF01619 Proline dehydrogenase LNP58_18720 PF14850 DNA-binding domain of Proline dehydrogenase LNP58_18720 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LNP58_18720 PF00171 Aldehyde dehydrogenase family LNP58_18765 PF01612 3'-5' exonuclease LNP58_18765 PF00570 HRDC domain LNP58_18775 PF03781 Sulfatase-modifying factor enzyme 1 LNP58_18790 PF02601 Exonuclease VII, large subunit LNP58_18790 PF13742 OB-fold nucleic acid binding domain LNP58_18800 PF08331 Domain of unknown function (DUF1730) LNP58_18805 PF01256 Carbohydrate kinase LNP58_18805 PF03853 YjeF-related protein N-terminus LNP58_18810 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LNP58_18815 PF01520 N-acetylmuramoyl-L-alanine amidase LNP58_18815 PF11741 AMIN domain LNP58_18820 PF01119 DNA mismatch repair protein, C-terminal domain LNP58_18820 PF08676 MutL C terminal dimerisation domain LNP58_18835 PF05233 PHB accumulation regulatory domain LNP58_18835 PF07879 PHB/PHA accumulation regulator DNA-binding domain LNP58_18840 PF00106 short chain dehydrogenase LNP58_18845 PF00749 tRNA synthetases class I (E and Q), catalytic domain LNP58_18850 PF01435 Peptidase family M48 LNP58_18855 PF00990 Diguanylate cyclase, GGDEF domain LNP58_18855 PF00072 Response regulator receiver domain LNP58_18855 PF00563 EAL domain LNP58_18865 PF07152 YaeQ protein LNP58_18870 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LNP58_18875 PF00313 'Cold-shock' DNA-binding domain LNP58_18880 PF02798 Glutathione S-transferase, N-terminal domain LNP58_18880 PF14497 Glutathione S-transferase, C-terminal domain LNP58_18890 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LNP58_18895 PF00156 Phosphoribosyl transferase domain LNP58_18900 PF00271 Helicase conserved C-terminal domain LNP58_18900 PF00270 DEAD/DEAH box helicase LNP58_18900 PF03880 DbpA RNA binding domain LNP58_18905 PF00005 ABC transporter LNP58_18905 PF16326 ABC transporter C-terminal domain LNP58_18905 PF12848 ABC transporter LNP58_18920 PF00545 ribonuclease LNP58_18925 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LNP58_18925 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LNP58_18930 PF00459 Inositol monophosphatase family LNP58_18935 PF00588 SpoU rRNA Methylase family LNP58_18945 PF03707 Bacterial signalling protein N terminal repeat LNP58_18945 PF13188 PAS domain LNP58_18945 PF00990 Diguanylate cyclase, GGDEF domain LNP58_18945 PF00563 EAL domain LNP58_18950 PF04055 Radical SAM superfamily LNP58_18955 PF08207 Elongation factor P (EF-P) KOW-like domain LNP58_18955 PF09285 Elongation factor P, C-terminal LNP58_18955 PF01132 Elongation factor P (EF-P) OB domain LNP58_18965 PF01979 Amidohydrolase family LNP58_18975 PF13419 Haloacid dehalogenase-like hydrolase LNP58_18985 PF00295 Glycosyl hydrolases family 28 LNP58_18995 PF01095 Pectinesterase LNP58_19005 PF05598 Transposase domain (DUF772) LNP58_19005 PF01609 Transposase DDE domain LNP58_19035 PF01551 Peptidase family M23 LNP58_19035 PF08460 Bacterial SH3 domain LNP58_19040 PF01979 Amidohydrolase family LNP58_19045 PF01809 Putative membrane protein insertion efficiency factor LNP58_19050 PF01258 Prokaryotic dksA/traR C4-type zinc finger LNP58_19065 PF02657 Fe-S metabolism associated domain LNP58_19070 PF01406 tRNA synthetases class I (C) catalytic domain LNP58_19070 PF09190 DALR domain LNP58_19080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LNP58_19080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LNP58_19085 PF00764 Arginosuccinate synthase LNP58_19095 PF07687 Peptidase dimerisation domain LNP58_19095 PF01546 Peptidase family M20/M25/M40 LNP58_19100 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LNP58_19100 PF00696 Amino acid kinase family LNP58_19110 PF01118 Semialdehyde dehydrogenase, NAD binding domain LNP58_19115 PF00206 Lyase LNP58_19130 PF01472 PUA domain LNP58_19130 PF00696 Amino acid kinase family LNP58_19135 PF00171 Aldehyde dehydrogenase family LNP58_19140 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LNP58_19140 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LNP58_19170 PF00005 ABC transporter LNP58_19170 PF00664 ABC transporter transmembrane region LNP58_19175 PF00005 ABC transporter LNP58_19175 PF00664 ABC transporter transmembrane region LNP58_19215 PF00034 Cytochrome c LNP58_19250 PF05598 Transposase domain (DUF772) LNP58_19250 PF01609 Transposase DDE domain LNP58_19260 PF01609 Transposase DDE domain LNP58_19260 PF05598 Transposase domain (DUF772) LNP58_19270 PF05593 RHS Repeat LNP58_19270 PF03527 RHS protein LNP58_19280 PF01609 Transposase DDE domain LNP58_19280 PF05598 Transposase domain (DUF772) LNP58_19310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_19310 PF01627 Hpt domain LNP58_19310 PF00072 Response regulator receiver domain LNP58_19310 PF01584 CheW-like domain LNP58_19310 PF02895 Signal transducing histidine kinase, homodimeric domain LNP58_19315 PF04344 Chemotaxis phosphatase, CheZ LNP58_19320 PF00072 Response regulator receiver domain LNP58_19325 PF04542 Sigma-70 region 2 LNP58_19325 PF04539 Sigma-70 region 3 LNP58_19325 PF04545 Sigma-70, region 4 LNP58_19330 PF10609 NUBPL iron-transfer P-loop NTPase LNP58_19335 PF00448 SRP54-type protein, GTPase domain LNP58_19340 PF00771 FHIPEP family LNP58_19345 PF01312 FlhB HrpN YscU SpaS Family LNP58_19350 PF00563 EAL domain LNP58_19350 PF00990 Diguanylate cyclase, GGDEF domain LNP58_19350 PF03707 Bacterial signalling protein N terminal repeat LNP58_19355 PF00990 Diguanylate cyclase, GGDEF domain LNP58_19360 PF00990 Diguanylate cyclase, GGDEF domain LNP58_19365 PF01311 Bacterial export proteins, family 1 LNP58_19370 PF01313 Bacterial export proteins, family 3 LNP58_19375 PF00813 FliP family LNP58_19380 PF04347 Flagellar biosynthesis protein, FliO LNP58_19385 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNP58_19390 PF02154 Flagellar motor switch protein FliM LNP58_19390 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LNP58_19410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LNP58_19410 PF18269 T3SS EscN ATPase C-terminal domain LNP58_19420 PF01706 FliG C-terminal domain LNP58_19420 PF14841 FliG middle domain LNP58_19420 PF14842 FliG N-terminal domain LNP58_19425 PF01514 Secretory protein of YscJ/FliF family LNP58_19425 PF08345 Flagellar M-ring protein C-terminal LNP58_19430 PF02049 Flagellar hook-basal body complex protein FliE LNP58_19435 PF00534 Glycosyl transferases group 1 LNP58_19435 PF00535 Glycosyl transferase family 2 LNP58_19470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LNP58_19470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LNP58_19480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LNP58_19485 PF06490 Flagellar regulatory protein FleQ LNP58_19485 PF02954 Bacterial regulatory protein, Fis family LNP58_19485 PF00158 Sigma-54 interaction domain LNP58_19490 PF01339 CheB methylesterase LNP58_19490 PF00072 Response regulator receiver domain LNP58_19495 PF00309 Sigma-54 factor, Activator interacting domain (AID) LNP58_19495 PF04963 Sigma-54 factor, core binding domain LNP58_19495 PF04552 Sigma-54, DNA binding domain LNP58_19500 PF00196 Bacterial regulatory proteins, luxR family LNP58_19500 PF00072 Response regulator receiver domain LNP58_19520 PF02561 Flagellar protein FliS LNP58_19525 PF07196 Flagellin hook IN motif LNP58_19525 PF07195 Flagellar hook-associated protein 2 C-terminus LNP58_19525 PF02465 Flagellar hook-associated protein 2 N-terminus LNP58_19530 PF00669 Bacterial flagellin N-terminal helical region LNP58_19530 PF00700 Bacterial flagellin C-terminal helical region LNP58_19540 PF07196 Flagellin hook IN motif LNP58_19540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNP58_19545 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LNP58_19545 PF10135 Rod binding protein LNP58_19550 PF02119 Flagellar P-ring protein LNP58_19555 PF02107 Flagellar L-ring protein LNP58_19560 PF00460 Flagella basal body rod protein LNP58_19560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNP58_19565 PF00460 Flagella basal body rod protein LNP58_19565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNP58_19570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNP58_19570 PF00460 Flagella basal body rod protein LNP58_19570 PF07559 Flagellar basal body protein FlaE LNP58_19575 PF03963 Flagellar hook capping protein - N-terminal region LNP58_19580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LNP58_19580 PF00460 Flagella basal body rod protein LNP58_19590 PF01584 CheW-like domain LNP58_19590 PF00072 Response regulator receiver domain LNP58_19610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_19610 PF00989 PAS fold LNP58_19610 PF13188 PAS domain LNP58_19610 PF13426 PAS domain LNP58_19610 PF00512 His Kinase A (phospho-acceptor) domain LNP58_19615 PF00563 EAL domain LNP58_19615 PF00990 Diguanylate cyclase, GGDEF domain LNP58_19615 PF03707 Bacterial signalling protein N terminal repeat LNP58_19620 PF07730 Histidine kinase LNP58_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_19625 PF00563 EAL domain LNP58_19625 PF08447 PAS fold LNP58_19625 PF08448 PAS fold LNP58_19625 PF00990 Diguanylate cyclase, GGDEF domain LNP58_19640 PF12729 Four helix bundle sensory module for signal transduction LNP58_19640 PF00672 HAMP domain LNP58_19640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LNP58_19645 PF04356 Protein of unknown function (DUF489) LNP58_19655 PF00293 NUDIX domain LNP58_19660 PF02617 ATP-dependent Clp protease adaptor protein ClpS LNP58_19665 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_19665 PF07724 AAA domain (Cdc48 subfamily) LNP58_19665 PF17871 AAA lid domain LNP58_19665 PF02861 Clp amino terminal domain, pathogenicity island component LNP58_19665 PF10431 C-terminal, D2-small domain, of ClpB protein LNP58_19670 PF01176 Translation initiation factor 1A / IF-1 LNP58_19675 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LNP58_19700 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_19705 PF17854 FtsK alpha domain LNP58_19705 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LNP58_19705 PF09397 Ftsk gamma domain LNP58_19705 PF01580 FtsK/SpoIIIE family LNP58_19715 PF03548 Outer membrane lipoprotein carrier protein LolA LNP58_19725 PF00004 ATPase family associated with various cellular activities (AAA) LNP58_19725 PF16193 AAA C-terminal domain LNP58_19725 PF12002 MgsA AAA+ ATPase C terminal LNP58_19735 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LNP58_19745 PF00654 Voltage gated chloride channel LNP58_19750 PF00108 Thiolase, N-terminal domain LNP58_19750 PF02803 Thiolase, C-terminal domain LNP58_19755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNP58_19755 PF00378 Enoyl-CoA hydratase/isomerase LNP58_19755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNP58_19765 PF00334 Nucleoside diphosphate kinase LNP58_19770 PF04055 Radical SAM superfamily LNP58_19780 PF13464 Domain of unknown function (DUF4115) LNP58_19790 PF01011 PQQ enzyme repeat LNP58_19790 PF13360 PQQ-like domain LNP58_19795 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LNP58_19795 PF01926 50S ribosome-binding GTPase LNP58_19800 PF03454 MoeA C-terminal region (domain IV) LNP58_19800 PF03453 MoeA N-terminal region (domain I and II) LNP58_19800 PF00994 Probable molybdopterin binding domain LNP58_19830 PF01609 Transposase DDE domain LNP58_19830 PF05598 Transposase domain (DUF772) LNP58_19865 PF00899 ThiF family LNP58_19880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_19880 PF00183 Hsp90 protein LNP58_19890 PF01467 Cytidylyltransferase-like LNP58_19900 PF00037 4Fe-4S binding domain LNP58_19975 PF02547 Queuosine biosynthesis protein LNP58_19980 PF01702 Queuine tRNA-ribosyltransferase LNP58_19985 PF02699 Preprotein translocase subunit LNP58_19990 PF02355 Protein export membrane protein LNP58_19990 PF13721 SecD export protein N-terminal TM region LNP58_19990 PF07549 SecD/SecF GG Motif LNP58_19995 PF07549 SecD/SecF GG Motif LNP58_19995 PF02355 Protein export membrane protein LNP58_20000 PF00589 Phage integrase family LNP58_20000 PF13495 Phage integrase, N-terminal SAM-like domain LNP58_20005 PF05598 Transposase domain (DUF772) LNP58_20005 PF01609 Transposase DDE domain LNP58_20040 PF00929 Exonuclease LNP58_20050 PF01895 PhoU domain LNP58_20055 PF00005 ABC transporter LNP58_20060 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_20065 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_20070 PF12849 PBP superfamily domain LNP58_20075 PF12849 PBP superfamily domain LNP58_20110 PF01609 Transposase DDE domain LNP58_20110 PF05598 Transposase domain (DUF772) LNP58_20130 PF00633 Helix-hairpin-helix motif LNP58_20130 PF00730 HhH-GPD superfamily base excision DNA repair protein LNP58_20130 PF10576 Iron-sulfur binding domain of endonuclease III LNP58_20140 PF00378 Enoyl-CoA hydratase/isomerase LNP58_20145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNP58_20145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNP58_20155 PF00293 NUDIX domain LNP58_20160 PF00581 Rhodanese-like domain LNP58_20200 PF10672 S-adenosylmethionine-dependent methyltransferase LNP58_20200 PF01170 Putative RNA methylase family UPF0020 LNP58_20200 PF02926 THUMP domain LNP58_20210 PF01513 ATP-NAD kinase LNP58_20225 PF00248 Aldo/keto reductase family LNP58_20235 PF00929 Exonuclease LNP58_20235 PF08411 Exonuclease C-terminal LNP58_20240 PF01494 FAD binding domain LNP58_20245 PF00266 Aminotransferase class-V LNP58_20255 PF06052 3-hydroxyanthranilic acid dioxygenase LNP58_20260 PF00484 Carbonic anhydrase LNP58_20285 PF00152 tRNA synthetases class II (D, K and N) LNP58_20285 PF01336 OB-fold nucleic acid binding domain LNP58_20290 PF01521 Iron-sulphur cluster biosynthesis LNP58_20295 PF01250 Ribosomal protein S6 LNP58_20300 PF01084 Ribosomal protein S18 LNP58_20305 PF01281 Ribosomal protein L9, N-terminal domain LNP58_20305 PF03948 Ribosomal protein L9, C-terminal domain LNP58_20310 PF02463 RecF/RecN/SMC N terminal domain LNP58_20315 PF04354 ZipA, C-terminal FtsZ-binding domain LNP58_20330 PF12826 Helix-hairpin-helix motif LNP58_20330 PF00533 BRCA1 C Terminus (BRCT) domain LNP58_20330 PF01653 NAD-dependent DNA ligase adenylation domain LNP58_20330 PF03120 NAD-dependent DNA ligase OB-fold domain LNP58_20330 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LNP58_20335 PF00152 tRNA synthetases class II (D, K and N) LNP58_20350 PF01008 Initiation factor 2 subunit family LNP58_20355 PF03989 DNA gyrase C-terminal domain, beta-propeller LNP58_20355 PF00521 DNA gyrase/topoisomerase IV, subunit A LNP58_20375 PF17392 Urocanase C-terminal domain LNP58_20375 PF17391 Urocanase N-terminal domain LNP58_20375 PF01175 Urocanase Rossmann-like domain LNP58_20385 PF00221 Aromatic amino acid lyase LNP58_20390 PF07969 Amidohydrolase family LNP58_20400 PF07702 UTRA domain LNP58_20400 PF00392 Bacterial regulatory proteins, gntR family LNP58_20425 PF01794 Ferric reductase like transmembrane component LNP58_20430 PF00174 Oxidoreductase molybdopterin binding domain LNP58_20435 PF00266 Aminotransferase class-V LNP58_20440 PF01817 Chorismate mutase type II LNP58_20440 PF00800 Prephenate dehydratase LNP58_20440 PF01842 ACT domain LNP58_20445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LNP58_20470 PF12951 Passenger-associated-transport-repeat LNP58_20475 PF00196 Bacterial regulatory proteins, luxR family LNP58_20475 PF00072 Response regulator receiver domain LNP58_20480 PF13426 PAS domain LNP58_20480 PF00072 Response regulator receiver domain LNP58_20480 PF08448 PAS fold LNP58_20480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_20480 PF00512 His Kinase A (phospho-acceptor) domain LNP58_20485 PF02321 Outer membrane efflux protein LNP58_20490 PF00873 AcrB/AcrD/AcrF family LNP58_20495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_20500 PF03797 Autotransporter beta-domain LNP58_20500 PF00082 Subtilase family LNP58_20505 PF05598 Transposase domain (DUF772) LNP58_20520 PF01520 N-acetylmuramoyl-L-alanine amidase LNP58_20525 PF02649 Type I GTP cyclohydrolase folE2 LNP58_20535 PF12626 Polymerase A arginine-rich C-terminus LNP58_20535 PF12627 Probable RNA and SrmB- binding site of polymerase A LNP58_20535 PF01743 Poly A polymerase head domain LNP58_20540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LNP58_20545 PF02548 Ketopantoate hydroxymethyltransferase LNP58_20550 PF02569 Pantoate-beta-alanine ligase LNP58_20555 PF02261 Aspartate decarboxylase LNP58_20560 PF00342 Phosphoglucose isomerase LNP58_20580 PF14310 Fibronectin type III-like domain LNP58_20580 PF01915 Glycosyl hydrolase family 3 C-terminal domain LNP58_20580 PF00933 Glycosyl hydrolase family 3 N terminal domain LNP58_20585 PF00474 Sodium:solute symporter family LNP58_20595 PF01590 GAF domain LNP58_20595 PF00990 Diguanylate cyclase, GGDEF domain LNP58_20595 PF00360 Phytochrome region LNP58_20595 PF00563 EAL domain LNP58_20610 PF14310 Fibronectin type III-like domain LNP58_20610 PF00933 Glycosyl hydrolase family 3 N terminal domain LNP58_20610 PF01915 Glycosyl hydrolase family 3 C-terminal domain LNP58_20645 PF12802 MarR family LNP58_20655 PF04542 Sigma-70 region 2 LNP58_20655 PF08281 Sigma-70, region 4 LNP58_20660 PF00082 Subtilase family LNP58_20680 PF00255 Glutathione peroxidase LNP58_20685 PF00970 Oxidoreductase FAD-binding domain LNP58_20685 PF00175 Oxidoreductase NAD-binding domain LNP58_20690 PF00005 ABC transporter LNP58_20695 PF05681 Fumarate hydratase (Fumerase) LNP58_20695 PF05683 Fumarase C-terminus LNP58_20710 PF02253 Phospholipase A1 LNP58_20730 PF00990 Diguanylate cyclase, GGDEF domain LNP58_20755 PF00512 His Kinase A (phospho-acceptor) domain LNP58_20755 PF01627 Hpt domain LNP58_20755 PF00072 Response regulator receiver domain LNP58_20755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LNP58_20755 PF00672 HAMP domain LNP58_20755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LNP58_20785 PF01081 KDPG and KHG aldolase LNP58_20790 PF00920 Dehydratase family LNP58_20795 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LNP58_20800 PF02685 Glucokinase LNP58_20805 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LNP58_20805 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LNP58_20810 PF17912 MalK OB fold domain LNP58_20810 PF00005 ABC transporter LNP58_20820 PF01571 Aminomethyltransferase folate-binding domain LNP58_20830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNP58_20835 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LNP58_20840 PF00890 FAD binding domain LNP58_20840 PF02910 Fumarate reductase flavoprotein C-term LNP58_20850 PF13085 2Fe-2S iron-sulfur cluster binding domain LNP58_20855 PF03937 Flavinator of succinate dehydrogenase LNP58_20865 PF12704 MacB-like periplasmic core domain LNP58_20865 PF02687 FtsX-like permease family LNP58_20870 PF00005 ABC transporter LNP58_20890 PF01618 MotA/TolQ/ExbB proton channel family LNP58_20900 PF00005 ABC transporter LNP58_20900 PF00664 ABC transporter transmembrane region LNP58_20905 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LNP58_20910 PF02348 Cytidylyltransferase LNP58_20915 PF01451 Low molecular weight phosphotyrosine protein phosphatase LNP58_20925 PF08459 UvrC Helix-hairpin-helix N-terminal LNP58_20925 PF02151 UvrB/uvrC motif LNP58_20925 PF01541 GIY-YIG catalytic domain LNP58_20930 PF01066 CDP-alcohol phosphatidyltransferase LNP58_20950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LNP58_20960 PF00872 Transposase, Mutator family LNP58_20975 PF03377 TAL effector repeat LNP58_20995 PF03377 TAL effector repeat LNP58_21010 PF03377 TAL effector repeat LNP58_21070 PF02303 Helix-destabilising protein LNP58_21180 PF03377 TAL effector repeat LNP58_21195 PF03377 TAL effector repeat LNP58_21205 PF01502 Phosphoribosyl-AMP cyclohydrolase LNP58_21205 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LNP58_21210 PF00977 Histidine biosynthesis protein LNP58_21215 PF00977 Histidine biosynthesis protein LNP58_21220 PF00117 Glutamine amidotransferase class-I LNP58_21225 PF00475 Imidazoleglycerol-phosphate dehydratase LNP58_21230 PF00155 Aminotransferase class I and II LNP58_21235 PF00815 Histidinol dehydrogenase LNP58_21240 PF01634 ATP phosphoribosyltransferase LNP58_21240 PF08029 HisG, C-terminal domain LNP58_21260 PF03129 Anticodon binding domain LNP58_21260 PF13393 Histidyl-tRNA synthetase LNP58_21275 PF14821 Threonine synthase N terminus LNP58_21275 PF00291 Pyridoxal-phosphate dependent enzyme LNP58_21290 PF08544 GHMP kinases C terminal LNP58_21290 PF00288 GHMP kinases N terminal domain LNP58_21295 PF00696 Amino acid kinase family LNP58_21295 PF01842 ACT domain LNP58_21295 PF13840 ACT domain LNP58_21295 PF00742 Homoserine dehydrogenase LNP58_21295 PF03447 Homoserine dehydrogenase, NAD binding domain LNP58_21310 PF00171 Aldehyde dehydrogenase family LNP58_21330 PF01180 Dihydroorotate dehydrogenase LNP58_21335 PF01565 FAD binding domain LNP58_21335 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LNP58_21340 PF00892 EamA-like transporter family LNP58_21365 PF01569 PAP2 superfamily LNP58_21370 PF04551 GcpE protein LNP58_21380 PF00072 Response regulator receiver domain LNP58_21395 PF17674 HHH domain LNP58_21395 PF00575 S1 RNA binding domain LNP58_21395 PF09371 Tex-like protein N-terminal domain LNP58_21395 PF16921 Tex protein YqgF-like domain LNP58_21405 PF01266 FAD dependent oxidoreductase LNP58_21405 PF00355 Rieske [2Fe-2S] domain LNP58_21420 PF00561 alpha/beta hydrolase fold LNP58_21430 PF01066 CDP-alcohol phosphatidyltransferase LNP58_21475 PF03618 Kinase/pyrophosphorylase LNP58_21480 PF02896 PEP-utilising enzyme, TIM barrel domain LNP58_21480 PF00391 PEP-utilising enzyme, mobile domain LNP58_21480 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LNP58_21485 PF00924 Mechanosensitive ion channel LNP58_21485 PF05552 Conserved TM helix LNP58_21490 PF00929 Exonuclease LNP58_21495 PF14437 MafB19-like deaminase LNP58_21500 PF02742 Iron dependent repressor, metal binding and dimerisation domain LNP58_21500 PF01325 Iron dependent repressor, N-terminal DNA binding domain LNP58_21505 PF01566 Natural resistance-associated macrophage protein LNP58_21530 PF03601 Conserved hypothetical protein 698 LNP58_21555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_21555 PF03466 LysR substrate binding domain LNP58_21560 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus LNP58_21560 PF00361 Proton-conducting membrane transporter LNP58_21560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LNP58_21565 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LNP58_21570 PF00117 Glutamine amidotransferase class-I LNP58_21570 PF02540 NAD synthase LNP58_21570 PF00958 GMP synthase C terminal domain LNP58_21575 PF00571 CBS domain LNP58_21575 PF00478 IMP dehydrogenase / GMP reductase domain LNP58_21580 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LNP58_21580 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LNP58_21600 PF00483 Nucleotidyl transferase LNP58_21605 PF02719 Polysaccharide biosynthesis protein LNP58_21610 PF00953 Glycosyl transferase family 4 LNP58_21615 PF18073 Rubredoxin metal binding domain LNP58_21625 PF00216 Bacterial DNA-binding protein LNP58_21630 PF00575 S1 RNA binding domain LNP58_21635 PF02224 Cytidylate kinase LNP58_21640 PF00444 Ribosomal protein L36 LNP58_21650 PF04371 Porphyromonas-type peptidyl-arginine deiminase LNP58_21660 PF00795 Carbon-nitrogen hydrolase LNP58_21685 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_21690 PF00528 Binding-protein-dependent transport system inner membrane component LNP58_21710 PF00356 Bacterial regulatory proteins, lacI family LNP58_21720 PF03795 YCII-related domain LNP58_21725 PF02616 Segregation and condensation protein ScpA LNP58_21730 PF04079 Segregation and condensation complex subunit ScpB LNP58_21735 PF01479 S4 domain LNP58_21735 PF00849 RNA pseudouridylate synthase LNP58_21755 PF00795 Carbon-nitrogen hydrolase LNP58_21760 PF00155 Aminotransferase class I and II LNP58_21765 PF00005 ABC transporter LNP58_21770 PF03379 CcmB protein LNP58_21775 PF01578 Cytochrome C assembly protein LNP58_21785 PF03100 CcmE LNP58_21790 PF01578 Cytochrome C assembly protein LNP58_21790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LNP58_21795 PF08534 Redoxin LNP58_21800 PF03918 Cytochrome C biogenesis protein LNP58_21825 PF02913 FAD linked oxidases, C-terminal domain LNP58_21825 PF01565 FAD binding domain LNP58_21830 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LNP58_21830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LNP58_21840 PF13520 Amino acid permease LNP58_21845 PF13520 Amino acid permease LNP58_21850 PF00596 Class II Aldolase and Adducin N-terminal domain LNP58_21855 PF03079 ARD/ARD' family LNP58_21885 PF03377 TAL effector repeat LNP58_21900 PF03377 TAL effector repeat LNP58_21915 PF03377 TAL effector repeat LNP58_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LNP58_21935 PF03466 LysR substrate binding domain LNP58_21940 PF02525 Flavodoxin-like fold LNP58_21945 PF01609 Transposase DDE domain LNP58_21945 PF05598 Transposase domain (DUF772) LNP58_21965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LNP58_21965 PF02403 Seryl-tRNA synthetase N-terminal domain LNP58_21970 PF03544 Gram-negative bacterial TonB protein C-terminal LNP58_21995 PF01609 Transposase DDE domain LNP58_21995 PF05598 Transposase domain (DUF772) LNP58_22045 PF01609 Transposase DDE domain LNP58_22045 PF05598 Transposase domain (DUF772) LNP58_22055 PF01609 Transposase DDE domain LNP58_22055 PF05598 Transposase domain (DUF772) LNP58_22065 PF00561 alpha/beta hydrolase fold LNP58_22080 PF00872 Transposase, Mutator family LNP58_22100 PF01609 Transposase DDE domain LNP58_22100 PF05598 Transposase domain (DUF772) LNP58_22110 PF00588 SpoU rRNA Methylase family LNP58_22110 PF08032 RNA 2'-O ribose methyltransferase substrate binding LNP58_22130 PF17876 Cold shock domain LNP58_22130 PF00575 S1 RNA binding domain LNP58_22130 PF00773 RNB domain LNP58_22130 PF08206 Ribonuclease B OB domain LNP58_22130 PF08461 Ribonuclease R winged-helix domain LNP58_22155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNP58_22155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNP58_22155 PF02770 Acyl-CoA dehydrogenase, middle domain LNP58_22160 PF01209 ubiE/COQ5 methyltransferase family LNP58_22165 PF00809 Pterin binding enzyme LNP58_22165 PF02574 Homocysteine S-methyltransferase LNP58_22170 PF02607 B12 binding domain LNP58_22170 PF02965 Vitamin B12 dependent methionine synthase, activation domain LNP58_22170 PF00809 Pterin binding enzyme LNP58_22170 PF02574 Homocysteine S-methyltransferase LNP58_22170 PF02310 B12 binding domain LNP58_22180 PF00294 pfkB family carbohydrate kinase LNP58_22185 PF07690 Major Facilitator Superfamily LNP58_22190 PF00356 Bacterial regulatory proteins, lacI family LNP58_22205 PF04102 SlyX LNP58_22210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LNP58_22210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LNP58_22210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LNP58_22215 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LNP58_22215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNP58_22220 PF00255 Glutathione peroxidase LNP58_22230 PF00392 Bacterial regulatory proteins, gntR family LNP58_22235 PF00005 ABC transporter LNP58_22260 PF00206 Lyase LNP58_22260 PF10415 Fumarase C C-terminus LNP58_22290 PF00206 Lyase LNP58_22290 PF08328 Adenylosuccinate lyase C-terminal LNP58_22310 PF08007 Cupin superfamily protein LNP58_22320 PF02779 Transketolase, pyrimidine binding domain LNP58_22320 PF16870 2-oxoglutarate dehydrogenase C-terminal LNP58_22320 PF00676 Dehydrogenase E1 component LNP58_22320 PF16078 2-oxoglutarate dehydrogenase N-terminus LNP58_22325 PF02817 e3 binding domain LNP58_22325 PF00364 Biotin-requiring enzyme LNP58_22325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LNP58_22330 PF07992 Pyridine nucleotide-disulphide oxidoreductase LNP58_22330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LNP58_22335 PF03641 Possible lysine decarboxylase LNP58_22340 PF01205 Uncharacterized protein family UPF0029 LNP58_22345 PF00005 ABC transporter LNP58_22345 PF00664 ABC transporter transmembrane region LNP58_22370 PF02153 Prephenate dehydrogenase LNP58_22370 PF01817 Chorismate mutase type II LNP58_22375 PF08543 Phosphomethylpyrimidine kinase LNP58_22380 PF00226 DnaJ domain LNP58_22380 PF00684 DnaJ central domain LNP58_22380 PF01556 DnaJ C terminal domain LNP58_22385 PF00012 Hsp70 protein LNP58_22390 PF01025 GrpE LNP58_22395 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LNP58_22395 PF01628 HrcA protein C terminal domain LNP58_22400 PF02463 RecF/RecN/SMC N terminal domain LNP58_22405 PF01475 Ferric uptake regulator family LNP58_22410 PF04355 SmpA / OmlA family LNP58_22415 PF03658 RnfH family Ubiquitin LNP58_22420 PF03364 Polyketide cyclase / dehydrase and lipid transport LNP58_22425 PF01668 SmpB protein LNP58_22440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNP58_22440 PF02770 Acyl-CoA dehydrogenase, middle domain LNP58_22440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNP58_22440 PF12806 Acetyl-CoA dehydrogenase C-terminal like LNP58_22450 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LNP58_22450 PF02779 Transketolase, pyrimidine binding domain LNP58_22450 PF02780 Transketolase, C-terminal domain LNP58_22495 PF07690 Major Facilitator Superfamily LNP58_22500 PF00529 HlyD membrane-fusion protein of T1SS LNP58_22500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LNP58_22505 PF02321 Outer membrane efflux protein LNP58_22520 PF03989 DNA gyrase C-terminal domain, beta-propeller LNP58_22520 PF00521 DNA gyrase/topoisomerase IV, subunit A LNP58_22525 PF00210 Ferritin-like domain LNP58_22530 PF01804 Penicillin amidase LNP58_22535 PF07715 TonB-dependent Receptor Plug Domain LNP58_22535 PF00593 TonB dependent receptor LNP58_22545 PF13537 Glutamine amidotransferase domain LNP58_22545 PF00733 Asparagine synthase LNP58_22550 PF01546 Peptidase family M20/M25/M40 LNP58_22550 PF07687 Peptidase dimerisation domain LNP58_22560 PF03960 ArsC family LNP58_22570 PF00132 Bacterial transferase hexapeptide (six repeats) LNP58_22570 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LNP58_22570 PF14602 Hexapeptide repeat of succinyl-transferase LNP58_22575 PF01909 Nucleotidyltransferase domain LNP58_22575 PF01966 HD domain LNP58_22575 PF08335 GlnD PII-uridylyltransferase LNP58_22580 PF00557 Metallopeptidase family M24 LNP58_22615 PF00318 Ribosomal protein S2 LNP58_22620 PF00889 Elongation factor TS LNP58_22630 PF00696 Amino acid kinase family LNP58_22635 PF01765 Ribosome recycling factor LNP58_22640 PF01255 Putative undecaprenyl diphosphate synthase LNP58_22650 PF13288 DXP reductoisomerase C-terminal domain LNP58_22650 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LNP58_22650 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LNP58_22655 PF02163 Peptidase family M50 LNP58_22655 PF17820 PDZ domain LNP58_22660 PF01103 Surface antigen LNP58_22660 PF07244 Surface antigen variable number repeat LNP58_22670 PF00132 Bacterial transferase hexapeptide (six repeats) LNP58_22670 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LNP58_22675 PF07977 FabA-like domain LNP58_22680 PF00132 Bacterial transferase hexapeptide (six repeats) LNP58_22680 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LNP58_22685 PF02684 Lipid-A-disaccharide synthetase LNP58_22690 PF01351 Ribonuclease HII LNP58_22695 PF01336 OB-fold nucleic acid binding domain LNP58_22695 PF02811 PHP domain LNP58_22695 PF14579 Helix-hairpin-helix motif LNP58_22695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LNP58_22695 PF07733 Bacterial DNA polymerase III alpha NTPase domain LNP58_22700 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LNP58_22710 PF07715 TonB-dependent Receptor Plug Domain LNP58_22710 PF00593 TonB dependent receptor LNP58_22715 PF00005 ABC transporter LNP58_22715 PF13732 Domain of unknown function (DUF4162) LNP58_22740 PF03653 Uncharacterised protein family (UPF0093) LNP58_22785 PF00009 Elongation factor Tu GTP binding domain LNP58_22805 PF05598 Transposase domain (DUF772) LNP58_22820 PF02592 Putative vitamin uptake transporter LNP58_22835 PF02574 Homocysteine S-methyltransferase LNP58_22840 PF00324 Amino acid permease LNP58_22860 PF09334 tRNA synthetases class I (M) LNP58_22860 PF01588 Putative tRNA binding domain LNP58_22870 PF04060 Putative Fe-S cluster LNP58_22885 PF04542 Sigma-70 region 2 LNP58_22885 PF04545 Sigma-70, region 4 LNP58_22930 PF01042 Endoribonuclease L-PSP LNP58_22940 PF03706 Lysylphosphatidylglycerol synthase TM region LNP58_22940 PF09924 Uncharacterised conserved protein (DUF2156) LNP58_22985 PF07690 Major Facilitator Superfamily LNP58_22990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LNP58_23000 PF08274 PhnA Zinc-Ribbon LNP58_23000 PF03831 PhnA domain LNP58_23015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LNP58_23050 PF01258 Prokaryotic dksA/traR C4-type zinc finger LNP58_23060 PF07043 Protein of unknown function (DUF1328) LNP58_23080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LNP58_23080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LNP58_23085 PF03797 Autotransporter beta-domain LNP58_23085 PF12951 Passenger-associated-transport-repeat LNP58_23085 PF00082 Subtilase family LNP58_23090 PF00108 Thiolase, N-terminal domain LNP58_23090 PF02803 Thiolase, C-terminal domain LNP58_23105 PF00072 Response regulator receiver domain LNP58_23105 PF00990 Diguanylate cyclase, GGDEF domain LNP58_23120 PF04679 ATP dependent DNA ligase C terminal region LNP58_23120 PF01068 ATP dependent DNA ligase domain LNP58_23120 PF04675 DNA ligase N terminus LNP58_23130 PF04679 ATP dependent DNA ligase C terminal region LNP58_23130 PF01068 ATP dependent DNA ligase domain LNP58_23130 PF04675 DNA ligase N terminus LNP58_23135 PF00270 DEAD/DEAH box helicase LNP58_23135 PF08494 DEAD/H associated LNP58_23135 PF00271 Helicase conserved C-terminal domain LNP58_23160 PF01494 FAD binding domain LNP58_23165 PF00313 'Cold-shock' DNA-binding domain LNP58_23170 PF01048 Phosphorylase superfamily LNP58_23175 PF00156 Phosphoribosyl transferase domain LNP58_23180 PF00933 Glycosyl hydrolase family 3 N terminal domain LNP58_23185 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LNP58_23190 PF01593 Flavin containing amine oxidoreductase LNP58_23195 PF01323 DSBA-like thioredoxin domain LNP58_23200 PF05598 Transposase domain (DUF772) LNP58_23210 PF01928 CYTH domain LNP58_23215 PF05958 tRNA (Uracil-5-)-methyltransferase LNP58_23225 PF11967 Recombination protein O N terminal LNP58_23225 PF02565 Recombination protein O C terminal LNP58_23230 PF07650 KH domain LNP58_23230 PF01926 50S ribosome-binding GTPase LNP58_23235 PF00035 Double-stranded RNA binding motif LNP58_23235 PF14622 Ribonuclease-III-like LNP58_23245 PF10502 Signal peptidase, peptidase S26 LNP58_23250 PF00679 Elongation factor G C-terminus LNP58_23250 PF00009 Elongation factor Tu GTP binding domain LNP58_23250 PF03144 Elongation factor Tu domain 2 LNP58_23250 PF06421 GTP-binding protein LepA C-terminus LNP58_23255 PF13180 PDZ domain LNP58_23265 PF04542 Sigma-70 region 2 LNP58_23265 PF08281 Sigma-70, region 4 LNP58_23270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNP58_23270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNP58_23270 PF00378 Enoyl-CoA hydratase/isomerase LNP58_23275 PF01545 Cation efflux family LNP58_23280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LNP58_23280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LNP58_23285 PF00378 Enoyl-CoA hydratase/isomerase LNP58_23285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LNP58_23285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LNP58_23290 PF00378 Enoyl-CoA hydratase/isomerase LNP58_23295 PF02770 Acyl-CoA dehydrogenase, middle domain LNP58_23295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LNP58_23295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LNP58_23300 PF00171 Aldehyde dehydrogenase family LNP58_23305 PF09856 Predicted transcriptional regulator (DUF2083) LNP58_23305 PF01381 Helix-turn-helix LNP58_23305 PF06114 IrrE N-terminal-like domain LNP58_23315 PF07745 Glycosyl hydrolase family 53