locus-tag class description LLC55_00005 IPR003593 AAA+ ATPase domain LLC55_00005 IPR001957 Chromosomal replication control, initiator DnaA LLC55_00005 IPR020591 Chromosomal replication control, initiator DnaA-like LLC55_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site LLC55_00005 IPR013317 Chromosomal replication initiator protein DnaA LLC55_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal LLC55_00005 IPR024633 DnaA N-terminal domain LLC55_00005 IPR038454 DnaA, N-terminal domain superfamily LLC55_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00005 IPR010921 Trp repressor/replication initiator LLC55_00010 IPR001001 DNA polymerase III, beta sliding clamp LLC55_00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal LLC55_00010 IPR022637 DNA polymerase III, beta sliding clamp, central LLC55_00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal LLC55_00015 IPR042174 DNA-binding RecF, domain 2 LLC55_00015 IPR003395 RecF/RecN/SMC, N-terminal LLC55_00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00015 IPR018078 DNA-binding, RecF, conserved site LLC55_00015 IPR001238 DNA-binding, RecF LLC55_00020 IPR002288 DNA gyrase B subunit, C-terminal LLC55_00020 IPR011557 DNA gyrase, subunit B LLC55_00020 IPR041423 DNA gyrase subunit B insert domain LLC55_00020 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_00020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_00020 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_00020 IPR001241 DNA topoisomerase, type IIA LLC55_00020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LLC55_00020 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal LLC55_00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 LLC55_00020 IPR018522 DNA topoisomerase, type IIA, conserved site LLC55_00020 IPR006171 TOPRIM domain LLC55_00020 IPR034160 DNA gyrase subunit B, TOPRIM domain LLC55_00030 IPR001915 Peptidase M48 LLC55_00040 IPR006260 TonB/TolA, C-terminal LLC55_00040 IPR037682 TonB, C-terminal LLC55_00045 IPR002898 MotA/TolQ/ExbB proton channel LLC55_00050 IPR003400 Biopolymer transport protein ExbD/TolR LLC55_00055 IPR003400 Biopolymer transport protein ExbD/TolR LLC55_00060 IPR013785 Aldolase-type TIM barrel LLC55_00060 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ LLC55_00060 IPR036130 Pyridoxine 5'-phosphate synthase LLC55_00070 IPR030874 Cardiolipin synthase, Firmicutes-type LLC55_00070 IPR022924 Cardiolipin synthase LLC55_00070 IPR027379 Cardiolipin synthase N-terminal LLC55_00070 IPR025202 Phospholipase D-like domain LLC55_00070 IPR001736 Phospholipase D/Transphosphatidylase LLC55_00080 IPR028343 Fructose-1,6-bisphosphatase LLC55_00080 IPR000146 Fructose-1,6-bisphosphatase class 1 LLC55_00080 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal LLC55_00085 IPR004839 Aminotransferase, class I/classII LLC55_00085 IPR000796 Aspartate/other aminotransferase LLC55_00085 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LLC55_00085 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_00085 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_00085 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_00090 IPR039426 Vitamin B12 transporter BtuB-like LLC55_00090 IPR012910 TonB-dependent receptor, plug domain LLC55_00090 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_00090 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_00090 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_00090 IPR010105 TonB-dependent siderophore receptor LLC55_00105 IPR008490 Transposase InsH, N-terminal LLC55_00105 IPR002559 Transposase, IS4-like LLC55_00110 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site LLC55_00110 IPR000262 FMN-dependent dehydrogenase LLC55_00110 IPR037396 FMN hydroxy acid dehydrogenase domain LLC55_00110 IPR020920 L-lactate dehydrogenase, bacterial LLC55_00110 IPR013785 Aldolase-type TIM barrel LLC55_00110 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent LLC55_00115 IPR007269 Isoprenylcysteine carboxyl methyltransferase LLC55_00130 IPR024906 Enoyl reductase FAD binding domain LLC55_00130 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative LLC55_00130 IPR010758 Trans-2-enoyl-CoA reductase LLC55_00140 IPR029056 Ribokinase-like LLC55_00140 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LLC55_00140 IPR011611 Carbohydrate kinase PfkB LLC55_00150 IPR002559 Transposase, IS4-like LLC55_00150 IPR008490 Transposase InsH, N-terminal LLC55_00160 IPR003593 AAA+ ATPase domain LLC55_00160 IPR003439 ABC transporter-like LLC55_00160 IPR017871 ABC transporter, conserved site LLC55_00160 IPR015854 ABC transporter, lipoprotein release, LolD LLC55_00160 IPR011924 Lipoprotein releasing system, ATP-binding protein LLC55_00160 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00170 IPR008490 Transposase InsH, N-terminal LLC55_00205 IPR008490 Transposase InsH, N-terminal LLC55_00205 IPR002559 Transposase, IS4-like LLC55_00210 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LLC55_00210 IPR011545 DEAD/DEAH box helicase domain LLC55_00210 IPR028622 ATP-dependent RNA helicase RhlE LLC55_00210 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_00210 IPR001650 Helicase, C-terminal LLC55_00210 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00210 IPR014014 RNA helicase, DEAD-box type, Q motif LLC55_00220 IPR010694 Uncharacterised protein family VirK LLC55_00250 IPR001826 RHS protein LLC55_00250 IPR022385 Rhs repeat-associated core LLC55_00250 IPR031325 RHS repeat LLC55_00250 IPR006530 YD repeat LLC55_00260 IPR002559 Transposase, IS4-like LLC55_00260 IPR008490 Transposase InsH, N-terminal LLC55_00305 IPR009056 Cytochrome c-like domain LLC55_00305 IPR036909 Cytochrome c-like domain superfamily LLC55_00305 IPR004852 Di-haem cytochrome c peroxidase LLC55_00305 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase LLC55_00305 IPR022394 Methylamine utilisation protein, MauG LLC55_00320 IPR016040 NAD(P)-binding domain LLC55_00320 IPR036291 NAD(P)-binding domain superfamily LLC55_00320 IPR000534 Semialdehyde dehydrogenase, NAD-binding LLC55_00325 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00325 IPR004193 Glycoside hydrolase, family 13, N-terminal LLC55_00325 IPR013780 Glycosyl hydrolase, all-beta LLC55_00325 IPR011837 Glycogen debranching enzyme, GlgX type LLC55_00325 IPR017853 Glycoside hydrolase superfamily LLC55_00325 IPR013783 Immunoglobulin-like fold LLC55_00325 IPR014756 Immunoglobulin E-set LLC55_00335 IPR017853 Glycoside hydrolase superfamily LLC55_00335 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00335 IPR012767 Maltooligosyl trehalose synthase LLC55_00340 IPR017853 Glycoside hydrolase superfamily LLC55_00340 IPR003385 Glycoside hydrolase, family 77 LLC55_00345 IPR004193 Glycoside hydrolase, family 13, N-terminal LLC55_00345 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) LLC55_00345 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00345 IPR013780 Glycosyl hydrolase, all-beta LLC55_00345 IPR014756 Immunoglobulin E-set LLC55_00345 IPR013783 Immunoglobulin-like fold LLC55_00345 IPR017853 Glycoside hydrolase superfamily LLC55_00345 IPR012768 Malto-oligosyltrehalose trehalohydrolase LLC55_00350 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta LLC55_00350 IPR037439 1,4-alpha-glucan-branching enzyme LLC55_00350 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00350 IPR013780 Glycosyl hydrolase, all-beta LLC55_00350 IPR017853 Glycoside hydrolase superfamily LLC55_00350 IPR013783 Immunoglobulin-like fold LLC55_00350 IPR014756 Immunoglobulin E-set LLC55_00350 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB LLC55_00350 IPR004193 Glycoside hydrolase, family 13, N-terminal LLC55_00355 IPR001296 Glycosyl transferase, family 1 LLC55_00355 IPR011835 Bacterial/plant glycogen synthase LLC55_00355 IPR013534 Starch synthase, catalytic domain LLC55_00360 IPR000160 GGDEF domain LLC55_00360 IPR029787 Nucleotide cyclase LLC55_00365 IPR017853 Glycoside hydrolase superfamily LLC55_00365 IPR013785 Aldolase-type TIM barrel LLC55_00365 IPR003790 Glycosyl hydrolase-like 10 LLC55_00370 IPR008526 Inner membrane protein YedI LLC55_00375 IPR000719 Protein kinase domain LLC55_00375 IPR004147 UbiB domain LLC55_00375 IPR011009 Protein kinase-like domain superfamily LLC55_00400 IPR025692 Mechanosensitive ion channel inner membrane domain 1 LLC55_00400 IPR010920 LSM domain superfamily LLC55_00400 IPR006685 Mechanosensitive ion channel MscS LLC55_00400 IPR024393 Mechanosensitive ion channel MscS, porin domain LLC55_00400 IPR011066 Mechanosensitive ion channel MscS, C-terminal LLC55_00400 IPR023408 Mechanosensitive ion channel MscS domain superfamily LLC55_00400 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 LLC55_00400 IPR006686 Mechanosensitive ion channel MscS, conserved site LLC55_00420 IPR008258 Transglycosylase SLT domain 1 LLC55_00420 IPR023346 Lysozyme-like domain superfamily LLC55_00430 IPR005644 NolW-like LLC55_00430 IPR038591 NolW-like superfamily LLC55_00430 IPR004846 Type II/III secretion system LLC55_00430 IPR004845 Type II secretion system GspD, conserved site LLC55_00430 IPR003522 Type III secretion system outer membrane pore YscC/HrcC LLC55_00435 IPR006304 Type III secretion protein SpaR/YscT LLC55_00435 IPR002010 Type III secretion system inner membrane R protein LLC55_00445 IPR040627 T3SS EscN ATPase, C-terminal LLC55_00445 IPR003593 AAA+ ATPase domain LLC55_00445 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LLC55_00445 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00445 IPR013380 ATPase, type III secretion system, H+-transporting LLC55_00445 IPR005714 ATPase, type III secretion system, FliI/YscN LLC55_00445 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LLC55_00445 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain LLC55_00460 IPR006182 Secretory protein YscJ/FliF LLC55_00460 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ LLC55_00475 IPR029025 Type III secretion system substrate exporter, C-terminal LLC55_00475 IPR006135 Type III secretion system substrate exporter LLC55_00475 IPR006307 Type III exporter system, secretion apparatus protein BsaZ LLC55_00480 IPR042194 FHIPEP, domain 1 LLC55_00480 IPR042193 FHIPEP, domain 3 LLC55_00480 IPR001712 Type III secretion system FHIPEP LLC55_00480 IPR025505 FHIPEP conserved site LLC55_00480 IPR042196 FHIPEP, domain 4 LLC55_00495 IPR005838 Type III secretion system inner membrane P protein LLC55_00495 IPR005773 Yop virulence translocation protein R LLC55_00500 IPR006305 Flagellar biosynthesis protein FliQ LLC55_00500 IPR002191 Bacterial export protein family 3 LLC55_00555 IPR008718 NolX LLC55_00585 IPR001478 PDZ domain LLC55_00585 IPR036034 PDZ superfamily LLC55_00585 IPR011782 Peptidase S1C, Do LLC55_00585 IPR009003 Peptidase S1, PA clan LLC55_00585 IPR001940 Peptidase S1C LLC55_00605 IPR013549 Domain of unknown function DUF1731 LLC55_00605 IPR001509 NAD-dependent epimerase/dehydratase LLC55_00605 IPR010099 Epimerase family protein SDR39U1 LLC55_00605 IPR036291 NAD(P)-binding domain superfamily LLC55_00615 IPR002559 Transposase, IS4-like LLC55_00615 IPR008490 Transposase InsH, N-terminal LLC55_00640 IPR001598 Transposase, IS30, conserved site LLC55_00640 IPR036397 Ribonuclease H superfamily LLC55_00640 IPR012337 Ribonuclease H-like superfamily LLC55_00640 IPR025246 Transposase IS30-like HTH domain LLC55_00640 IPR001584 Integrase, catalytic core LLC55_00660 IPR020476 NUDIX hydrolase LLC55_00660 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_00660 IPR020084 NUDIX hydrolase, conserved site LLC55_00660 IPR000086 NUDIX hydrolase domain LLC55_00660 IPR036412 HAD-like superfamily LLC55_00660 IPR023214 HAD superfamily LLC55_00660 IPR006357 HAD-superfamily hydrolase, subfamily IIA LLC55_00685 IPR036397 Ribonuclease H superfamily LLC55_00685 IPR009057 Homeobox-like domain superfamily LLC55_00685 IPR001584 Integrase, catalytic core LLC55_00685 IPR001598 Transposase, IS30, conserved site LLC55_00685 IPR012337 Ribonuclease H-like superfamily LLC55_00695 IPR039562 Membrane fusion protein, biotin-lipoyl like domain LLC55_00695 IPR006143 RND efflux pump, membrane fusion protein LLC55_00695 IPR022824 Multidrug resistance protein MdtA LLC55_00700 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00700 IPR003439 ABC transporter-like LLC55_00700 IPR003593 AAA+ ATPase domain LLC55_00700 IPR017871 ABC transporter, conserved site LLC55_00725 IPR007159 SpoVT-AbrB domain LLC55_00725 IPR014944 Toxin SymE-like LLC55_00725 IPR020883 Type I toxin-antitoxin system, SymE toxin LLC55_00740 IPR004254 AdipoR/Haemolysin-III-related LLC55_00740 IPR005744 Hly-III LLC55_00745 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00745 IPR011545 DEAD/DEAH box helicase domain LLC55_00745 IPR001650 Helicase, C-terminal LLC55_00745 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_00745 IPR018973 DEAD/DEAH-box helicase, putative LLC55_00805 IPR013785 Aldolase-type TIM barrel LLC55_00805 IPR017932 Glutamine amidotransferase type 2 domain LLC55_00805 IPR002489 Glutamate synthase, alpha subunit, C-terminal LLC55_00805 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily LLC55_00805 IPR006982 Glutamate synthase, central-N LLC55_00805 IPR002932 Glutamate synthase domain LLC55_00805 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_00810 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_00810 IPR023753 FAD/NAD(P)-binding domain LLC55_00810 IPR009051 Alpha-helical ferredoxin LLC55_00810 IPR028261 Dihydroprymidine dehydrogenase domain II LLC55_00810 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 LLC55_00810 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_00850 IPR008490 Transposase InsH, N-terminal LLC55_00860 IPR000843 LacI-type HTH domain LLC55_00860 IPR023588 Transcription regulator HTH, PurR LLC55_00860 IPR028082 Periplasmic binding protein-like I LLC55_00860 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_00880 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB LLC55_00880 IPR037439 1,4-alpha-glucan-branching enzyme LLC55_00880 IPR013780 Glycosyl hydrolase, all-beta LLC55_00880 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta LLC55_00880 IPR017853 Glycoside hydrolase superfamily LLC55_00880 IPR013783 Immunoglobulin-like fold LLC55_00880 IPR014756 Immunoglobulin E-set LLC55_00880 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00880 IPR004193 Glycoside hydrolase, family 13, N-terminal LLC55_00885 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00885 IPR012810 Trehalose synthase/alpha-amylase, N-terminal LLC55_00885 IPR013780 Glycosyl hydrolase, all-beta LLC55_00885 IPR017853 Glycoside hydrolase superfamily LLC55_00885 IPR032091 Maltogenic Amylase, C-terminal LLC55_00890 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S LLC55_00890 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_00890 IPR013780 Glycosyl hydrolase, all-beta LLC55_00890 IPR017853 Glycoside hydrolase superfamily LLC55_00890 IPR013783 Immunoglobulin-like fold LLC55_00890 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase LLC55_00935 IPR025158 Mg chelatase-related protein, C-terminal domain LLC55_00935 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_00935 IPR003593 AAA+ ATPase domain LLC55_00935 IPR001208 MCM domain LLC55_00935 IPR004482 Mg chelatase-related protein LLC55_00935 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_00935 IPR000523 Magnesium chelatase ChlI domain LLC55_00935 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_00940 IPR007475 Ubiquinone biosynthesis accessory factor UbiK LLC55_00945 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LLC55_00945 IPR011322 Nitrogen regulatory PII-like, alpha/beta LLC55_00945 IPR002187 Nitrogen regulatory protein PII LLC55_00945 IPR002332 Nitrogen regulatory protein P-II, urydylation site LLC55_00945 IPR017918 Nitrogen regulatory protein PII, conserved site LLC55_00975 IPR035246 Spermidine synthase, tetramerisation domain LLC55_00975 IPR001045 Spermidine/spermine synthases LLC55_00975 IPR037163 Spermidine synthase, tetramerisation domain superfamily LLC55_00975 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_00975 IPR030373 Polyamine biosynthesis domain, conserved site LLC55_00975 IPR030374 Polyamine biosynthesis domain LLC55_00980 IPR029066 PLP-binding barrel LLC55_00980 IPR041128 Arginine decarboxylase, C-terminal helical LLC55_00980 IPR002985 Arginine decarboxylase LLC55_00980 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site LLC55_00980 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal LLC55_00980 IPR040634 Arginine decarboxylase, helical bundle domain LLC55_00980 IPR000183 Ornithine/DAP/Arg decarboxylase LLC55_00980 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal LLC55_00985 IPR008490 Transposase InsH, N-terminal LLC55_00990 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_00990 IPR006531 Gp5 N-terminal LLC55_00990 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_00990 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_00990 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_00990 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_01030 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related LLC55_01030 IPR020595 MnmG-related, conserved site LLC55_01030 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG LLC55_01030 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_01030 IPR026904 GidA associated domain 3 LLC55_01045 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_01045 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_01065 IPR041698 Methyltransferase domain 25 LLC55_01065 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC LLC55_01065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_01070 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_01070 IPR036291 NAD(P)-binding domain superfamily LLC55_01070 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_01070 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase LLC55_01075 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase LLC55_01075 IPR000073 Alpha/beta hydrolase fold-1 LLC55_01075 IPR029058 Alpha/Beta hydrolase fold LLC55_01095 IPR011013 Galactose mutarotase-like domain superfamily LLC55_01095 IPR014718 Glycoside hydrolase-type carbohydrate-binding LLC55_01095 IPR023724 Glucan biosynthesis, MdoD LLC55_01095 IPR014438 Glucan biosynthesis protein MdoG/MdoD LLC55_01095 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal LLC55_01095 IPR013783 Immunoglobulin-like fold LLC55_01095 IPR014756 Immunoglobulin E-set LLC55_01095 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_01105 IPR001267 Thymidine kinase LLC55_01105 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01110 IPR014016 UvrD-like helicase, ATP-binding domain LLC55_01110 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01110 IPR005752 ATP-dependent DNA helicase Rep LLC55_01110 IPR034739 UvrD/AddA helicase, N-terminal LLC55_01110 IPR000212 DNA helicase, UvrD/REP type LLC55_01110 IPR013986 DExx box DNA helicase domain superfamily LLC55_01110 IPR014017 UvrD-like DNA helicase, C-terminal LLC55_01125 IPR036390 Winged helix DNA-binding domain superfamily LLC55_01125 IPR007432 Protein of unknown function DUF480 LLC55_01125 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_01130 IPR023214 HAD superfamily LLC55_01130 IPR006423 5-nucleotidase lipoprotein e(P4) LLC55_01130 IPR005519 Acid phosphatase, class B-like LLC55_01130 IPR036412 HAD-like superfamily LLC55_01135 IPR013785 Aldolase-type TIM barrel LLC55_01135 IPR014732 Orotidine 5'-phosphate decarboxylase LLC55_01135 IPR018089 Orotidine 5'-phosphate decarboxylase, active site LLC55_01135 IPR001754 Orotidine 5'-phosphate decarboxylase domain LLC55_01135 IPR011060 Ribulose-phosphate binding barrel LLC55_01140 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_01140 IPR006905 Flavin-dependent halogenase LLC55_01140 IPR033856 Flavin-dependent tryptophan halogenase LLC55_01155 IPR006377 Catabolite control protein A LLC55_01155 IPR000843 LacI-type HTH domain LLC55_01155 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_01155 IPR028082 Periplasmic binding protein-like I LLC55_01170 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase LLC55_01170 IPR002123 Phospholipid/glycerol acyltransferase LLC55_01170 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB LLC55_01170 IPR041728 GPAT/DHAPAT, acyltransferase domain LLC55_01210 IPR001273 Aromatic amino acid hydroxylase LLC55_01210 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site LLC55_01210 IPR036951 Aromatic amino acid hydroxylase superfamily LLC55_01210 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily LLC55_01210 IPR019774 Aromatic amino acid hydroxylase, C-terminal LLC55_01210 IPR005960 Phenylalanine-4-hydroxylase, monomeric form LLC55_01215 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_01215 IPR000485 AsnC-type HTH domain LLC55_01215 IPR011008 Dimeric alpha-beta barrel LLC55_01215 IPR019888 Transcription regulator AsnC-type LLC55_01215 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain LLC55_01215 IPR019885 Transcription regulator HTH, AsnC-type, conserved site LLC55_01215 IPR036390 Winged helix DNA-binding domain superfamily LLC55_01260 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LLC55_01260 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 LLC55_01260 IPR011032 GroES-like superfamily LLC55_01260 IPR020843 Polyketide synthase, enoylreductase domain LLC55_01260 IPR036291 NAD(P)-binding domain superfamily LLC55_01260 IPR013154 Alcohol dehydrogenase, N-terminal LLC55_01260 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_01265 IPR001547 Glycoside hydrolase, family 5 LLC55_01265 IPR017853 Glycoside hydrolase superfamily LLC55_01265 IPR018087 Glycoside hydrolase, family 5, conserved site LLC55_01275 IPR017853 Glycoside hydrolase superfamily LLC55_01275 IPR018087 Glycoside hydrolase, family 5, conserved site LLC55_01275 IPR001547 Glycoside hydrolase, family 5 LLC55_01285 IPR018087 Glycoside hydrolase, family 5, conserved site LLC55_01285 IPR001547 Glycoside hydrolase, family 5 LLC55_01285 IPR017853 Glycoside hydrolase superfamily LLC55_01290 IPR002559 Transposase, IS4-like LLC55_01290 IPR008490 Transposase InsH, N-terminal LLC55_01300 IPR023006 Uncharacterised protein family UPF0225 LLC55_01300 IPR032710 NTF2-like domain superfamily LLC55_01300 IPR004027 SEC-C motif LLC55_01315 IPR002559 Transposase, IS4-like LLC55_01315 IPR008490 Transposase InsH, N-terminal LLC55_01320 IPR025532 Glucose-6-phosphate 1-epimerase LLC55_01320 IPR014718 Glycoside hydrolase-type carbohydrate-binding LLC55_01320 IPR011013 Galactose mutarotase-like domain superfamily LLC55_01320 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase LLC55_01330 IPR016053 Haem oxygenase-like LLC55_01330 IPR016084 Haem oxygenase-like, multi-helical LLC55_01335 IPR003018 GAF domain LLC55_01335 IPR035965 PAS domain superfamily LLC55_01335 IPR000014 PAS domain LLC55_01335 IPR013654 PAS fold-2 LLC55_01335 IPR029016 GAF-like domain superfamily LLC55_01335 IPR013515 Phytochrome, central region LLC55_01335 IPR001294 Phytochrome LLC55_01335 IPR016132 Phytochrome chromophore attachment domain LLC55_01385 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding LLC55_01385 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site LLC55_01385 IPR020629 Formamidopyrimidine-DNA glycosylase LLC55_01385 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain LLC55_01385 IPR035937 MutM-like, N-terminal LLC55_01385 IPR010979 Ribosomal protein S13-like, H2TH LLC55_01385 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type LLC55_01385 IPR010663 Zinc finger, FPG/IleRS-type LLC55_01405 IPR007428 MlaA lipoprotein LLC55_01415 IPR042245 Tgt2/MlaC superfamily LLC55_01415 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC LLC55_01420 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD LLC55_01420 IPR003399 Mce/MlaD LLC55_01425 IPR003453 ABC transport permease subunit MlaE, Proteobacteria LLC55_01425 IPR030802 ABC transporter permease MalE LLC55_01430 IPR003593 AAA+ ATPase domain LLC55_01430 IPR003439 ABC transporter-like LLC55_01430 IPR017871 ABC transporter, conserved site LLC55_01430 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl LLC55_01430 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01455 IPR036397 Ribonuclease H superfamily LLC55_01455 IPR001598 Transposase, IS30, conserved site LLC55_01455 IPR009057 Homeobox-like domain superfamily LLC55_01455 IPR001584 Integrase, catalytic core LLC55_01455 IPR012337 Ribonuclease H-like superfamily LLC55_01505 IPR025666 Pyrrolo-quinoline quinone-like domain LLC55_01505 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily LLC55_01505 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LLC55_01505 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat LLC55_01505 IPR002372 Pyrrolo-quinoline quinone repeat LLC55_01515 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01515 IPR006001 Carbohydrate kinase, thermoresistant glucokinase LLC55_01520 IPR039672 Lactose permease-like LLC55_01520 IPR036259 MFS transporter superfamily LLC55_01520 IPR001927 Sodium:galactoside symporter LLC55_01520 IPR018043 Sodium:galactoside symporter, conserved site LLC55_01525 IPR010383 Glycosyl hydrolase 94 LLC55_01525 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily LLC55_01525 IPR037814 Cellobionic acid phosphorylase, N-terminal LLC55_01525 IPR033432 Glycosyl hydrolase 36, catalytic domain LLC55_01525 IPR008928 Six-hairpin glycosidase superfamily LLC55_01525 IPR012341 Six-hairpin glycosidase-like superfamily LLC55_01525 IPR011013 Galactose mutarotase-like domain superfamily LLC55_01535 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_01535 IPR000700 PAS-associated, C-terminal LLC55_01535 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_01535 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_01535 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_01535 IPR005467 Histidine kinase domain LLC55_01535 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_01540 IPR003810 Putative manganese efflux pump LLC55_01540 IPR022929 Putative manganese efflux pump MntP LLC55_01545 IPR036390 Winged helix DNA-binding domain superfamily LLC55_01545 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_01545 IPR005471 Transcription regulator IclR, N-terminal LLC55_01545 IPR014757 Transcription regulator IclR, C-terminal LLC55_01545 IPR029016 GAF-like domain superfamily LLC55_01550 IPR036259 MFS transporter superfamily LLC55_01550 IPR020846 Major facilitator superfamily domain LLC55_01550 IPR011701 Major facilitator superfamily LLC55_01550 IPR005275 L-fucose permease FucP LLC55_01555 IPR011008 Dimeric alpha-beta barrel LLC55_01555 IPR008000 Rhamnose/fucose mutarotase LLC55_01585 IPR001567 Peptidase M3A/M3B catalytic domain LLC55_01585 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 LLC55_01605 IPR000352 Peptide chain release factor class I LLC55_01615 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_01615 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site LLC55_01615 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_01625 IPR011009 Protein kinase-like domain superfamily LLC55_01625 IPR004147 UbiB domain LLC55_01625 IPR010232 Probable protein kinase UbiB LLC55_01705 IPR036291 NAD(P)-binding domain superfamily LLC55_01705 IPR013332 Ketopantoate reductase, N-terminal domain LLC55_01705 IPR013752 Ketopantoate reductase, C-terminal domain LLC55_01705 IPR003710 Ketopantoate reductase ApbA/PanE LLC55_01705 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_01705 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_01715 IPR013525 ABC-2 type transporter LLC55_01715 IPR000412 ABC-2 transporter LLC55_01720 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01720 IPR003593 AAA+ ATPase domain LLC55_01720 IPR003439 ABC transporter-like LLC55_01720 IPR017871 ABC transporter, conserved site LLC55_01725 IPR001433 Oxidoreductase FAD/NAD(P)-binding LLC55_01725 IPR035442 Ferredoxin--NADP reductase, plant and Cyanobacteria type LLC55_01725 IPR017938 Riboflavin synthase-like beta-barrel LLC55_01725 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LLC55_01725 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LLC55_01725 IPR015701 Ferredoxin--NADP reductase LLC55_01725 IPR008213 CpcD-like domain LLC55_01725 IPR017927 FAD-binding domain, ferredoxin reductase-type LLC55_01730 IPR002524 Cation efflux protein LLC55_01730 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LLC55_01730 IPR027469 Cation efflux transmembrane domain superfamily LLC55_01735 IPR038390 Metal-sensitive transcriptional repressor superfamily LLC55_01735 IPR003735 Metal-sensitive transcriptional repressor LLC55_01750 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_01750 IPR001387 Cro/C1-type helix-turn-helix domain LLC55_01760 IPR003593 AAA+ ATPase domain LLC55_01760 IPR003439 ABC transporter-like LLC55_01760 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01760 IPR017871 ABC transporter, conserved site LLC55_01775 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_01775 IPR033856 Flavin-dependent tryptophan halogenase LLC55_01775 IPR006905 Flavin-dependent halogenase LLC55_01795 IPR004045 Glutathione S-transferase, N-terminal LLC55_01795 IPR004046 Glutathione S-transferase, C-terminal LLC55_01795 IPR036282 Glutathione S-transferase, C-terminal domain superfamily LLC55_01795 IPR036249 Thioredoxin-like superfamily LLC55_01795 IPR010987 Glutathione S-transferase, C-terminal-like LLC55_01800 IPR029058 Alpha/Beta hydrolase fold LLC55_01800 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LLC55_01800 IPR002469 Dipeptidylpeptidase IV, N-terminal domain LLC55_01800 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily LLC55_01825 IPR001731 Delta-aminolevulinic acid dehydratase LLC55_01825 IPR030656 Delta-aminolevulinic acid dehydratase, active site LLC55_01825 IPR013785 Aldolase-type TIM barrel LLC55_01840 IPR036390 Winged helix DNA-binding domain superfamily LLC55_01840 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_01840 IPR005119 LysR, substrate-binding LLC55_01840 IPR000847 Transcription regulator HTH, LysR LLC55_01850 IPR008254 Flavodoxin/nitric oxide synthase LLC55_01850 IPR017938 Riboflavin synthase-like beta-barrel LLC55_01850 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain LLC55_01850 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding LLC55_01850 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria LLC55_01850 IPR017927 FAD-binding domain, ferredoxin reductase-type LLC55_01850 IPR001094 Flavodoxin-like LLC55_01850 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LLC55_01850 IPR029039 Flavoprotein-like superfamily LLC55_01850 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily LLC55_01850 IPR001433 Oxidoreductase FAD/NAD(P)-binding LLC55_01850 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LLC55_01865 IPR036291 NAD(P)-binding domain superfamily LLC55_01865 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase LLC55_01865 IPR022893 Shikimate dehydrogenase family LLC55_01865 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal LLC55_01865 IPR011342 Shikimate dehydrogenase LLC55_01865 IPR041121 SDH, C-terminal LLC55_01880 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01880 IPR006555 ATP-dependent helicase, C-terminal LLC55_01880 IPR010614 DEAD2 LLC55_01880 IPR039000 ATP-dependent DNA helicase DinG LLC55_01880 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type LLC55_01880 IPR001650 Helicase, C-terminal LLC55_01900 IPR020835 Catalase superfamily LLC55_01900 IPR018028 Catalase, mono-functional, haem-containing LLC55_01900 IPR024708 Catalase active site LLC55_01900 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 LLC55_01900 IPR011614 Catalase core domain LLC55_01900 IPR037060 Catalase core domain superfamily LLC55_01900 IPR010582 Catalase immune-responsive domain LLC55_01900 IPR002226 Catalase haem-binding site LLC55_01920 IPR013785 Aldolase-type TIM barrel LLC55_01920 IPR004653 tRNA-dihydrouridine(20/20a) synthase LLC55_01920 IPR035587 DUS-like, FMN-binding domain LLC55_01920 IPR018517 tRNA-dihydrouridine synthase, conserved site LLC55_01920 IPR001269 tRNA-dihydrouridine synthase LLC55_01930 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_01930 IPR039420 Transcriptional regulatory protein WalR-like LLC55_01930 IPR001789 Signal transduction response regulator, receiver domain LLC55_01930 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_01930 IPR011006 CheY-like superfamily LLC55_01935 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_01935 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_01935 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_01935 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_01935 IPR005467 Histidine kinase domain LLC55_01935 IPR003660 HAMP domain LLC55_01935 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_01950 IPR042252 MtfA, N-terminal LLC55_01950 IPR010384 MtfA family LLC55_01950 IPR024079 Metallopeptidase, catalytic domain superfamily LLC55_01960 IPR036390 Winged helix DNA-binding domain superfamily LLC55_01960 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_01960 IPR004409 Biotin operon repressor, helix-turn-helix domain LLC55_01960 IPR013196 Helix-turn-helix, type 11 LLC55_01960 IPR004408 Biotin--acetyl-CoA-carboxylase ligase LLC55_01960 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain LLC55_01960 IPR030855 Bifunctional ligase/repressor BirA LLC55_01960 IPR003142 Biotin protein ligase, C-terminal LLC55_01960 IPR008988 Transcriptional repressor, C-terminal LLC55_01965 IPR004619 Type III pantothenate kinase LLC55_01980 IPR018094 Thymidylate kinase LLC55_01980 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_01980 IPR039430 Thymidylate kinase-like domain LLC55_02000 IPR006035 Ureohydrolase LLC55_02000 IPR023696 Ureohydrolase domain superfamily LLC55_02000 IPR020855 Ureohydrolase, manganese-binding site LLC55_02000 IPR014033 Arginase LLC55_02015 IPR008462 CsbD-like domain LLC55_02015 IPR026042 Stress response protein YjbJ LLC55_02015 IPR036629 YjbJ superfamily LLC55_02020 IPR024109 Tryptophan-tRNA ligase, bacterial-type LLC55_02020 IPR036913 YegP-like superfamily LLC55_02020 IPR002306 Tryptophan-tRNA ligase LLC55_02020 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_02020 IPR002305 Aminoacyl-tRNA synthetase, class Ic LLC55_02025 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_02025 IPR001279 Metallo-beta-lactamase LLC55_02050 IPR000620 EamA domain LLC55_02050 IPR004626 RarD protein LLC55_02070 IPR011614 Catalase core domain LLC55_02070 IPR024168 Catalase, SrpA-type, predicted LLC55_02070 IPR018028 Catalase, mono-functional, haem-containing LLC55_02070 IPR020835 Catalase superfamily LLC55_02075 IPR014293 RNA polymerase sigma-70, actinobacteria LLC55_02075 IPR014284 RNA polymerase sigma-70 like domain LLC55_02075 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_02075 IPR039425 RNA polymerase sigma-70 like LLC55_02075 IPR013325 RNA polymerase sigma factor, region 2 LLC55_02075 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LLC55_02075 IPR007627 RNA polymerase sigma-70 region 2 LLC55_02075 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LLC55_02075 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_02085 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B LLC55_02085 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal LLC55_02085 IPR023042 Peptidase M17, leucine aminopeptidase LLC55_02085 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal LLC55_02095 IPR002549 Transmembrane protein TqsA-like LLC55_02105 IPR000537 UbiA prenyltransferase family LLC55_02105 IPR039653 Prenyltransferase LLC55_02105 IPR006370 4-hydroxybenzoate polyprenyltransferase-like LLC55_02105 IPR030470 UbiA prenyltransferase conserved site LLC55_02110 IPR000836 Phosphoribosyltransferase domain LLC55_02110 IPR029057 Phosphoribosyltransferase-like LLC55_02110 IPR005222 Competence protein ComF LLC55_02115 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB LLC55_02115 IPR013785 Aldolase-type TIM barrel LLC55_02115 IPR010722 Biotin and thiamin synthesis-associated domain LLC55_02115 IPR024177 Biotin synthase LLC55_02115 IPR007197 Radical SAM LLC55_02115 IPR006638 Elp3/MiaB/NifB LLC55_02120 IPR004839 Aminotransferase, class I/classII LLC55_02120 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type LLC55_02120 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria LLC55_02120 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_02120 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_02120 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_02130 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_02130 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_02130 IPR036291 NAD(P)-binding domain superfamily LLC55_02130 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase LLC55_02145 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_02145 IPR039528 DPM1-like LLC55_02145 IPR001173 Glycosyltransferase 2-like LLC55_02155 IPR016039 Thiolase-like LLC55_02155 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 LLC55_02155 IPR014030 Beta-ketoacyl synthase, N-terminal LLC55_02155 IPR014031 Beta-ketoacyl synthase, C-terminal LLC55_02155 IPR018201 Beta-ketoacyl synthase, active site LLC55_02155 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LLC55_02155 IPR000794 Beta-ketoacyl synthase LLC55_02160 IPR038068 YcgL-like superfamily LLC55_02160 IPR027354 YcgL domain LLC55_02175 IPR011613 GH15-like domain LLC55_02175 IPR008928 Six-hairpin glycosidase superfamily LLC55_02175 IPR012341 Six-hairpin glycosidase-like superfamily LLC55_02180 IPR036291 NAD(P)-binding domain superfamily LLC55_02180 IPR001282 Glucose-6-phosphate dehydrogenase LLC55_02180 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal LLC55_02180 IPR019796 Glucose-6-phosphate dehydrogenase, active site LLC55_02180 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding LLC55_02190 IPR036291 NAD(P)-binding domain superfamily LLC55_02190 IPR003148 Regulator of K+ conductance, N-terminal LLC55_02190 IPR020884 Glutathione-regulated potassium-efflux system protein KefB LLC55_02190 IPR004771 K+/H+ exchanger LLC55_02190 IPR006153 Cation/H+ exchanger LLC55_02190 IPR038770 Sodium/solute symporter superfamily LLC55_02195 IPR000644 CBS domain LLC55_02195 IPR038076 MgtE, N-terminal domain superfamily LLC55_02195 IPR038048 Magnesium transporter MgtE, transmembrane domain LLC55_02195 IPR006669 Magnesium transporter MgtE LLC55_02195 IPR006667 SLC41 divalent cation transporters, integral membrane domain LLC55_02195 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily LLC55_02195 IPR006668 Magnesium transporter, MgtE intracellular domain LLC55_02205 IPR036291 NAD(P)-binding domain superfamily LLC55_02205 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain LLC55_02205 IPR016102 Succinyl-CoA synthetase-like LLC55_02205 IPR013815 ATP-grasp fold, subdomain 1 LLC55_02205 IPR000182 GNAT domain LLC55_02205 IPR003781 CoA-binding LLC55_02205 IPR011761 ATP-grasp fold LLC55_02205 IPR016181 Acyl-CoA N-acyltransferase LLC55_02215 IPR005144 ATP-cone domain LLC55_02215 IPR013346 Ribonucleotide reductase, class I , alpha subunit LLC55_02215 IPR000788 Ribonucleotide reductase large subunit, C-terminal LLC55_02215 IPR013509 Ribonucleotide reductase large subunit, N-terminal LLC55_02215 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal LLC55_02215 IPR039718 Ribonucleoside-diphosphate reductase large subunit LLC55_02220 IPR009078 Ferritin-like superfamily LLC55_02220 IPR012348 Ribonucleotide reductase-like LLC55_02220 IPR033909 Ribonucleotide reductase small subunit LLC55_02220 IPR000358 Ribonucleotide reductase small subunit family LLC55_02250 IPR020616 Thiolase, N-terminal LLC55_02250 IPR020613 Thiolase, conserved site LLC55_02250 IPR020617 Thiolase, C-terminal LLC55_02250 IPR016039 Thiolase-like LLC55_02250 IPR020615 Thiolase, acyl-enzyme intermediate active site LLC55_02250 IPR012793 Beta-ketoadipyl CoA thiolase LLC55_02250 IPR020610 Thiolase, active site LLC55_02250 IPR002155 Thiolase LLC55_02255 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal LLC55_02255 IPR015889 Intradiol ring-cleavage dioxygenase, core LLC55_02255 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal LLC55_02255 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit LLC55_02260 IPR015889 Intradiol ring-cleavage dioxygenase, core LLC55_02260 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit LLC55_02260 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal LLC55_02270 IPR008948 L-Aspartase-like LLC55_02270 IPR022761 Fumarate lyase, N-terminal LLC55_02270 IPR000362 Fumarate lyase family LLC55_02270 IPR020557 Fumarate lyase, conserved site LLC55_02270 IPR024083 Fumarase/histidase, N-terminal LLC55_02270 IPR019468 Adenylosuccinate lyase C-terminal LLC55_02270 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase LLC55_02275 IPR029058 Alpha/Beta hydrolase fold LLC55_02275 IPR026968 3-oxoadipate enol-lactonase 1/2 LLC55_02275 IPR000073 Alpha/beta hydrolase fold-1 LLC55_02275 IPR022742 Serine aminopeptidase, S33 LLC55_02280 IPR029032 AhpD-like LLC55_02280 IPR003779 Carboxymuconolactone decarboxylase-like LLC55_02280 IPR012788 4-carboxymuconolactone decarboxylase LLC55_02305 IPR036291 NAD(P)-binding domain superfamily LLC55_02305 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_02305 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_02320 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily LLC55_02320 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_02320 IPR001278 Arginine-tRNA ligase LLC55_02320 IPR035684 Arginyl-tRNA synthetase, catalytic core domain LLC55_02320 IPR005148 Arginyl tRNA synthetase N-terminal domain LLC55_02320 IPR008909 DALR anticodon binding LLC55_02320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_02320 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LLC55_02325 IPR020891 Uncharacterised protein family UPF0758, conserved site LLC55_02325 IPR001405 Uncharacterised protein family UPF0758 LLC55_02325 IPR037518 MPN domain LLC55_02325 IPR025657 RadC-like JAB domain LLC55_02325 IPR010994 RuvA domain 2-like LLC55_02330 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal LLC55_02330 IPR036551 Flavin prenyltransferase-like LLC55_02330 IPR035929 CoaB-like superfamily LLC55_02330 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC LLC55_02330 IPR003382 Flavoprotein LLC55_02335 IPR029054 dUTPase-like LLC55_02335 IPR036157 dUTPase-like superfamily LLC55_02335 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase LLC55_02335 IPR033704 dUTPase, trimeric LLC55_02340 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I LLC55_02340 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III LLC55_02340 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II LLC55_02340 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III LLC55_02340 IPR005843 Alpha-D-phosphohexomutase, C-terminal LLC55_02340 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily LLC55_02340 IPR016066 Alpha-D-phosphohexomutase, conserved site LLC55_02340 IPR005841 Alpha-D-phosphohexomutase superfamily LLC55_02355 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_02355 IPR001173 Glycosyltransferase 2-like LLC55_02360 IPR001509 NAD-dependent epimerase/dehydratase LLC55_02360 IPR036291 NAD(P)-binding domain superfamily LLC55_02370 IPR036086 ParB/Sulfiredoxin superfamily LLC55_02370 IPR003115 ParB/Sulfiredoxin LLC55_02370 IPR004437 ParB/RepB/Spo0J partition protein LLC55_02370 IPR041468 ParB/Spo0J, HTH domain LLC55_02375 IPR025669 AAA domain LLC55_02375 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_02385 IPR023031 Orotate phosphoribosyltransferase LLC55_02385 IPR004467 Orotate phosphoribosyl transferase domain LLC55_02385 IPR000836 Phosphoribosyltransferase domain LLC55_02385 IPR029057 Phosphoribosyltransferase-like LLC55_02390 IPR005135 Endonuclease/exonuclease/phosphatase LLC55_02390 IPR036691 Endonuclease/exonuclease/phosphatase superfamily LLC55_02390 IPR020848 AP endonuclease 1, conserved site LLC55_02390 IPR020847 AP endonuclease 1, binding site LLC55_02390 IPR004808 AP endonuclease 1 LLC55_02400 IPR020846 Major facilitator superfamily domain LLC55_02400 IPR011701 Major facilitator superfamily LLC55_02400 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 LLC55_02400 IPR036259 MFS transporter superfamily LLC55_02410 IPR005338 Anhydro-N-acetylmuramic acid kinase LLC55_02415 IPR011055 Duplicated hybrid motif LLC55_02415 IPR007340 Opacity-associated protein A LLC55_02415 IPR016047 Peptidase M23 LLC55_02420 IPR024088 Tyrosine-tRNA ligase, bacterial-type LLC55_02420 IPR002307 Tyrosine-tRNA ligase LLC55_02420 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 LLC55_02420 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_02420 IPR036986 RNA-binding S4 domain superfamily LLC55_02420 IPR002305 Aminoacyl-tRNA synthetase, class Ic LLC55_02420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_02420 IPR002942 RNA-binding S4 domain LLC55_02455 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_02455 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_02455 IPR001789 Signal transduction response regulator, receiver domain LLC55_02455 IPR036641 HPT domain superfamily LLC55_02455 IPR003660 HAMP domain LLC55_02455 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_02455 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_02455 IPR005467 Histidine kinase domain LLC55_02455 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_02455 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_02455 IPR019247 Histidine kinase BarA, N-terminal LLC55_02455 IPR011006 CheY-like superfamily LLC55_02460 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_02460 IPR011006 CheY-like superfamily LLC55_02460 IPR001789 Signal transduction response regulator, receiver domain LLC55_02460 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_02460 IPR039420 Transcriptional regulatory protein WalR-like LLC55_02485 IPR000361 FeS cluster biogenesis LLC55_02485 IPR016092 FeS cluster insertion protein LLC55_02485 IPR017870 FeS cluster insertion, C-terminal, conserved site LLC55_02485 IPR023063 FeS cluster insertion protein ErpA LLC55_02485 IPR035903 HesB-like domain superfamily LLC55_02495 IPR015376 Zinc ribbon, NADH pyrophosphatase LLC55_02495 IPR000086 NUDIX hydrolase domain LLC55_02495 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_02495 IPR022925 NADH pyrophosphatase NudC LLC55_02495 IPR020084 NUDIX hydrolase, conserved site LLC55_02495 IPR015375 NADH pyrophosphatase-like, N-terminal LLC55_02500 IPR031347 Protein AmpE LLC55_02500 IPR004485 Cobalamin biosynthesis CobD/CbiB LLC55_02515 IPR023727 Lysophospholipid transporter LplT LLC55_02515 IPR011701 Major facilitator superfamily LLC55_02515 IPR036259 MFS transporter superfamily LLC55_02530 IPR010019 Integral membrane protein, YccS LLC55_02530 IPR010020 Integral membrane protein, YccS/YhfK LLC55_02530 IPR032692 Integral membrane protein YccS, N-terminal LLC55_02540 IPR003838 ABC transporter permease protein domain LLC55_02540 IPR003593 AAA+ ATPase domain LLC55_02540 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_02540 IPR025857 MacB-like periplasmic core domain LLC55_02540 IPR017911 ABC transporter, macrolide export, ATP-binding domain LLC55_02540 IPR017871 ABC transporter, conserved site LLC55_02540 IPR003439 ABC transporter-like LLC55_02545 IPR011054 Rudiment single hybrid motif LLC55_02545 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal LLC55_02545 IPR020559 Phosphoribosylglycinamide synthetase, conserved site LLC55_02545 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily LLC55_02545 IPR016185 Pre-ATP-grasp domain superfamily LLC55_02545 IPR000115 Phosphoribosylglycinamide synthetase LLC55_02545 IPR013815 ATP-grasp fold, subdomain 1 LLC55_02545 IPR020560 Phosphoribosylglycinamide synthetase, C-domain LLC55_02545 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LLC55_02545 IPR011761 ATP-grasp fold LLC55_02555 IPR003959 ATPase, AAA-type, core LLC55_02555 IPR029012 Helix hairpin bin domain superfamily LLC55_02555 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_02555 IPR013134 RAD50, zinc hook LLC55_02560 IPR016193 Cytidine deaminase-like LLC55_02560 IPR011607 Methylglyoxal synthase-like domain LLC55_02560 IPR036914 Methylglyoxal synthase-like domain superfamily LLC55_02560 IPR002695 Bifunctional purine biosynthesis protein PurH-like LLC55_02560 IPR024051 AICAR transformylase, duplicated domain superfamily LLC55_02590 IPR002197 DNA binding HTH domain, Fis-type LLC55_02590 IPR005412 DNA-binding protein Fis LLC55_02590 IPR009057 Homeobox-like domain superfamily LLC55_02600 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_02600 IPR001387 Cro/C1-type helix-turn-helix domain LLC55_02615 IPR004498 Ribosomal protein L11 methyltransferase LLC55_02615 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_02630 IPR011054 Rudiment single hybrid motif LLC55_02630 IPR016185 Pre-ATP-grasp domain superfamily LLC55_02630 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LLC55_02630 IPR005482 Biotin carboxylase, C-terminal LLC55_02630 IPR005481 Biotin carboxylase-like, N-terminal domain LLC55_02630 IPR013815 ATP-grasp fold, subdomain 1 LLC55_02630 IPR011761 ATP-grasp fold LLC55_02630 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase LLC55_02630 IPR011764 Biotin carboxylation domain LLC55_02640 IPR000089 Biotin/lipoyl attachment LLC55_02640 IPR011053 Single hybrid motif LLC55_02640 IPR001249 Acetyl-CoA biotin carboxyl carrier LLC55_02640 IPR001882 Biotin-binding site LLC55_02645 IPR001874 Dehydroquinase, class II LLC55_02645 IPR018509 Dehydroquinase, class II, conserved site LLC55_02645 IPR036441 Dehydroquinase, class II superfamily LLC55_02650 IPR035671 DsbD gamma LLC55_02650 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain LLC55_02650 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily LLC55_02650 IPR022910 Thiol:disulphide interchange protein DsbD LLC55_02650 IPR036249 Thioredoxin-like superfamily LLC55_02650 IPR013766 Thioredoxin domain LLC55_02650 IPR003834 Cytochrome C biogenesis protein, transmembrane domain LLC55_02655 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LLC55_02655 IPR004323 Divalent ion tolerance protein, CutA LLC55_02655 IPR011322 Nitrogen regulatory PII-like, alpha/beta LLC55_02690 IPR011545 DEAD/DEAH box helicase domain LLC55_02690 IPR001650 Helicase, C-terminal LLC55_02690 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain LLC55_02690 IPR041236 Primosomal protein N, C-terminal domain LLC55_02690 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily LLC55_02690 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_02690 IPR005259 Primosomal protein N' LLC55_02690 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_02690 IPR041222 Primosomal protein N', 3' DNA-binding domain LLC55_02710 IPR002528 Multi antimicrobial extrusion protein LLC55_02715 IPR029045 ClpP/crotonase-like domain superfamily LLC55_02715 IPR004634 Peptidase S49, protease IV LLC55_02715 IPR004635 Peptidase S49, SppA LLC55_02715 IPR002142 Peptidase S49 LLC55_02715 IPR033854 Signal peptide peptidase A LLC55_02725 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_02725 IPR036291 NAD(P)-binding domain superfamily LLC55_02725 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_02740 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily LLC55_02740 IPR023535 Threonylcarbamoyl-AMP synthase LLC55_02740 IPR006070 YrdC-like domain LLC55_02745 IPR005733 DNA topoisomerase I, bacterial-type LLC55_02745 IPR034149 DNA topoisomerase 1, TOPRIM domain LLC55_02745 IPR006171 TOPRIM domain LLC55_02745 IPR025589 Topoisomerase C-terminal repeat LLC55_02745 IPR028612 DNA topoisomerase I, type IA LLC55_02745 IPR003602 DNA topoisomerase, type IA, DNA-binding domain LLC55_02745 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 LLC55_02745 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 LLC55_02745 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 LLC55_02745 IPR013497 DNA topoisomerase, type IA, central LLC55_02745 IPR023406 DNA topoisomerase, type IA, active site LLC55_02745 IPR000380 DNA topoisomerase, type IA LLC55_02745 IPR023405 DNA topoisomerase, type IA, core domain LLC55_02745 IPR003601 DNA topoisomerase, type IA, domain 2 LLC55_02755 IPR012902 Prokaryotic N-terminal methylation site LLC55_02755 IPR001082 Fimbrial protein pilin LLC55_02760 IPR007456 Smg LLC55_02765 IPR003488 DNA recombination-mediator protein A LLC55_02765 IPR041614 DprA, winged helix domain LLC55_02765 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_02770 IPR036779 LysM domain superfamily LLC55_02770 IPR018392 LysM domain LLC55_02775 IPR036821 Peptide deformylase superfamily LLC55_02775 IPR023635 Peptide deformylase LLC55_02780 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain LLC55_02780 IPR001555 Phosphoribosylglycinamide formyltransferase, active site LLC55_02780 IPR011034 Formyl transferase-like, C-terminal domain superfamily LLC55_02780 IPR005794 Methionyl-tRNA formyltransferase LLC55_02780 IPR002376 Formyl transferase, N-terminal LLC55_02780 IPR037022 Formyl transferase, C-terminal domain superfamily LLC55_02780 IPR005793 Formyl transferase, C-terminal LLC55_02780 IPR036477 Formyl transferase, N-terminal domain superfamily LLC55_02785 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site LLC55_02785 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type LLC55_02785 IPR006027 NusB/RsmB/TIM44 LLC55_02785 IPR023267 RNA (C5-cytosine) methyltransferase LLC55_02785 IPR004573 rRNA small subunit methyltransferase B LLC55_02785 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_02785 IPR035926 NusB-like superfamily LLC55_02800 IPR001173 Glycosyltransferase 2-like LLC55_02800 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_02820 IPR036144 RibA-like superfamily LLC55_02820 IPR032677 GTP cyclohydrolase II LLC55_02820 IPR000926 GTP cyclohydrolase II, RibA LLC55_02825 IPR000182 GNAT domain LLC55_02825 IPR016181 Acyl-CoA N-acyltransferase LLC55_02835 IPR004960 Bacterial lipid A biosynthesis acyltransferase LLC55_02835 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase LLC55_02835 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP LLC55_02840 IPR003732 D-aminoacyl-tRNA deacylase DTD LLC55_02840 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily LLC55_02845 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_02845 IPR028630 RNA polymerase sigma factor RpoD LLC55_02845 IPR012760 RNA polymerase sigma factor RpoD, C-terminal LLC55_02845 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_02845 IPR013325 RNA polymerase sigma factor, region 2 LLC55_02845 IPR042189 Sigma-70 factor, region 1.1 superfamily LLC55_02845 IPR007630 RNA polymerase sigma-70 region 4 LLC55_02845 IPR007631 RNA polymerase sigma factor 70, non-essential domain LLC55_02845 IPR007624 RNA polymerase sigma-70 region 3 LLC55_02845 IPR007627 RNA polymerase sigma-70 region 2 LLC55_02845 IPR009042 RNA polymerase sigma-70 region 1.2 LLC55_02845 IPR000943 RNA polymerase sigma-70 LLC55_02845 IPR014284 RNA polymerase sigma-70 like domain LLC55_02845 IPR007127 RNA polymerase sigma factor 70, region 1.1 LLC55_02925 IPR017871 ABC transporter, conserved site LLC55_02925 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_02925 IPR003593 AAA+ ATPase domain LLC55_02925 IPR003439 ABC transporter-like LLC55_02940 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_02940 IPR010105 TonB-dependent siderophore receptor LLC55_02940 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_02940 IPR012910 TonB-dependent receptor, plug domain LLC55_02940 IPR039423 TonB-dependent receptor-like LLC55_02940 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_03000 IPR003317 Cytochrome ubiquinol oxidase subunit 2 LLC55_03005 IPR002585 Cytochrome ubiquinol oxidase subunit 1 LLC55_03015 IPR010114 DNA-binding transcriptional regulator NtrC LLC55_03015 IPR025944 Sigma-54 interaction domain, conserved site LLC55_03015 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LLC55_03015 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LLC55_03015 IPR002078 RNA polymerase sigma factor 54 interaction domain LLC55_03015 IPR001789 Signal transduction response regulator, receiver domain LLC55_03015 IPR009057 Homeobox-like domain superfamily LLC55_03015 IPR011006 CheY-like superfamily LLC55_03015 IPR003593 AAA+ ATPase domain LLC55_03015 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03015 IPR002197 DNA binding HTH domain, Fis-type LLC55_03040 IPR005467 Histidine kinase domain LLC55_03040 IPR010559 Signal transduction histidine kinase, internal region LLC55_03040 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_03040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_03040 IPR003660 HAMP domain LLC55_03040 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_03040 IPR033479 Double Cache domain 1 LLC55_03055 IPR002293 Amino acid/polyamine transporter I LLC55_03075 IPR024079 Metallopeptidase, catalytic domain superfamily LLC55_03075 IPR000718 Peptidase M13 LLC55_03075 IPR018497 Peptidase M13, C-terminal domain LLC55_03075 IPR042089 Peptidase M13, domain 2 LLC55_03075 IPR008753 Peptidase M13, N-terminal domain LLC55_03090 IPR036812 NADP-dependent oxidoreductase domain superfamily LLC55_03090 IPR020471 Aldo/keto reductase LLC55_03090 IPR023210 NADP-dependent oxidoreductase domain LLC55_03095 IPR008254 Flavodoxin/nitric oxide synthase LLC55_03095 IPR029039 Flavoprotein-like superfamily LLC55_03095 IPR005025 NADPH-dependent FMN reductase-like LLC55_03105 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type LLC55_03105 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B LLC55_03115 IPR005273 Uracil-DNA glycosylase family 4 LLC55_03115 IPR005122 Uracil-DNA glycosylase-like LLC55_03115 IPR036895 Uracil-DNA glycosylase-like domain superfamily LLC55_03125 IPR036378 FAS1 domain superfamily LLC55_03125 IPR000782 FAS1 domain LLC55_03135 IPR006153 Cation/H+ exchanger LLC55_03135 IPR018422 Cation/H+ exchanger, CPA1 family LLC55_03135 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria LLC55_03135 IPR038770 Sodium/solute symporter superfamily LLC55_03140 IPR003439 ABC transporter-like LLC55_03140 IPR003593 AAA+ ATPase domain LLC55_03140 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03140 IPR017871 ABC transporter, conserved site LLC55_03145 IPR000412 ABC-2 transporter LLC55_03145 IPR013525 ABC-2 type transporter LLC55_03160 IPR023828 Peptidase S8, subtilisin, Ser-active site LLC55_03160 IPR015500 Peptidase S8, subtilisin-related LLC55_03160 IPR034176 Peptidase MprA-like catalytic domain LLC55_03160 IPR007280 Peptidase, C-terminal, archaeal/bacterial LLC55_03160 IPR000209 Peptidase S8/S53 domain LLC55_03160 IPR036852 Peptidase S8/S53 domain superfamily LLC55_03160 IPR022398 Peptidase S8, subtilisin, His-active site LLC55_03160 IPR023827 Peptidase S8, subtilisin, Asp-active site LLC55_03170 IPR001789 Signal transduction response regulator, receiver domain LLC55_03170 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_03170 IPR035965 PAS domain superfamily LLC55_03170 IPR000014 PAS domain LLC55_03170 IPR011006 CheY-like superfamily LLC55_03170 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_03170 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_03170 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_03170 IPR005467 Histidine kinase domain LLC55_03170 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_03170 IPR013656 PAS fold-4 LLC55_03175 IPR001789 Signal transduction response regulator, receiver domain LLC55_03175 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_03175 IPR039420 Transcriptional regulatory protein WalR-like LLC55_03175 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_03175 IPR011006 CheY-like superfamily LLC55_03195 IPR006665 OmpA-like domain LLC55_03195 IPR025713 Motility protein B, N-terminal domain LLC55_03195 IPR036737 OmpA-like domain superfamily LLC55_03200 IPR022522 Flagellar motor stator, MotA LLC55_03200 IPR002898 MotA/TolQ/ExbB proton channel LLC55_03200 IPR000540 Flagellar motor protein MotA, conserved site LLC55_03210 IPR028427 Peptide methionine sulfoxide reductase LLC55_03210 IPR011057 Mss4-like superfamily LLC55_03210 IPR002579 Peptide methionine sulphoxide reductase MrsB LLC55_03220 IPR011991 ArsR-like helix-turn-helix domain LLC55_03220 IPR036390 Winged helix DNA-binding domain superfamily LLC55_03220 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_03220 IPR019885 Transcription regulator HTH, AsnC-type, conserved site LLC55_03220 IPR000485 AsnC-type HTH domain LLC55_03220 IPR019888 Transcription regulator AsnC-type LLC55_03220 IPR011008 Dimeric alpha-beta barrel LLC55_03220 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain LLC55_03225 IPR023080 D-amino acid dehydrogenase DadA LLC55_03225 IPR006076 FAD dependent oxidoreductase LLC55_03225 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_03230 IPR000821 Alanine racemase LLC55_03230 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal LLC55_03230 IPR011079 Alanine racemase, C-terminal LLC55_03230 IPR001608 Alanine racemase, N-terminal LLC55_03230 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site LLC55_03230 IPR029066 PLP-binding barrel LLC55_03250 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_03250 IPR013767 PAS fold LLC55_03250 IPR035965 PAS domain superfamily LLC55_03250 IPR000014 PAS domain LLC55_03250 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_03250 IPR005467 Histidine kinase domain LLC55_03250 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_03250 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_03250 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_03265 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_03265 IPR012938 Glucose/Sorbosone dehydrogenase LLC55_03265 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase LLC55_03280 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_03280 IPR013675 Methyltransferase small, N-terminal LLC55_03280 IPR023543 rRNA small subunit methyltransferase C LLC55_03280 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_03280 IPR007848 Methyltransferase small domain LLC55_03285 IPR036986 RNA-binding S4 domain superfamily LLC55_03285 IPR002942 RNA-binding S4 domain LLC55_03285 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LLC55_03285 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_03285 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_03285 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LLC55_03285 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LLC55_03295 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_03295 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_03295 IPR036291 NAD(P)-binding domain superfamily LLC55_03320 IPR007551 Protein of unknown function DUF520 LLC55_03320 IPR035571 UPF0234-like, C-terminal LLC55_03320 IPR035570 UPF0234, N-terminal LLC55_03320 IPR036183 YajQ-like superfamily LLC55_03325 IPR000620 EamA domain LLC55_03330 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03330 IPR018449 NIL domain LLC55_03330 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain LLC55_03330 IPR003439 ABC transporter-like LLC55_03330 IPR026253 Methionine import ATP-binding protein MetN LLC55_03330 IPR003593 AAA+ ATPase domain LLC55_03330 IPR017871 ABC transporter, conserved site LLC55_03330 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal LLC55_03335 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_03335 IPR035906 MetI-like superfamily LLC55_03340 IPR004872 Lipoprotein NlpA family LLC55_03365 IPR011053 Single hybrid motif LLC55_03365 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LLC55_03365 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain LLC55_03365 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex LLC55_03365 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LLC55_03365 IPR036625 E3-binding domain superfamily LLC55_03365 IPR004167 Peripheral subunit-binding domain LLC55_03365 IPR000089 Biotin/lipoyl attachment LLC55_03375 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site LLC55_03375 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_03375 IPR023753 FAD/NAD(P)-binding domain LLC55_03375 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily LLC55_03375 IPR006258 Dihydrolipoamide dehydrogenase LLC55_03375 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I LLC55_03375 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLC55_03395 IPR023011 ATP synthase, F0 complex, subunit A, active site LLC55_03395 IPR035908 ATP synthase, F0 complex, subunit A superfamily LLC55_03395 IPR000568 ATP synthase, F0 complex, subunit A LLC55_03400 IPR035921 F/V-ATP synthase subunit C superfamily LLC55_03400 IPR002379 V-ATPase proteolipid subunit C-like domain LLC55_03400 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site LLC55_03400 IPR000454 ATP synthase, F0 complex, subunit C LLC55_03400 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast LLC55_03400 IPR038662 F1F0 ATP synthase subunit C superfamily LLC55_03405 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily LLC55_03405 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast LLC55_03405 IPR005864 ATP synthase, F0 complex, subunit b, bacterial LLC55_03410 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily LLC55_03410 IPR000711 ATPase, OSCP/delta subunit LLC55_03415 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily LLC55_03415 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain LLC55_03415 IPR005294 ATP synthase, F1 complex, alpha subunit LLC55_03415 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LLC55_03415 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain LLC55_03415 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily LLC55_03415 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LLC55_03415 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03415 IPR000793 ATP synthase, alpha subunit, C-terminal LLC55_03415 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily LLC55_03420 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily LLC55_03420 IPR000131 ATP synthase, F1 complex, gamma subunit LLC55_03420 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site LLC55_03425 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03425 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal LLC55_03425 IPR003593 AAA+ ATPase domain LLC55_03425 IPR005722 ATP synthase, F1 complex, beta subunit LLC55_03425 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LLC55_03425 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain LLC55_03425 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily LLC55_03425 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LLC55_03430 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal LLC55_03430 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily LLC55_03430 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit LLC55_03430 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal LLC55_03435 IPR036263 Chorismate mutase type II superfamily LLC55_03435 IPR002701 Chorismate mutase II, prokaryotic-type LLC55_03435 IPR008240 Chorismate mutase, periplasmic LLC55_03445 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase LLC55_03445 IPR038009 GlmU, C-terminal LbH domain LLC55_03445 IPR001451 Hexapeptide repeat LLC55_03445 IPR025877 MobA-like NTP transferase LLC55_03445 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_03445 IPR011004 Trimeric LpxA-like superfamily LLC55_03480 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_03480 IPR030190 Macrolide export protein MacA LLC55_03480 IPR006143 RND efflux pump, membrane fusion protein LLC55_03485 IPR017932 Glutamine amidotransferase type 2 domain LLC55_03485 IPR035466 GlmS/AgaS, SIS domain 1 LLC55_03485 IPR035490 GlmS/FrlB, SIS domain 2 LLC55_03485 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising LLC55_03485 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_03485 IPR001347 Sugar isomerase (SIS) LLC55_03515 IPR037523 Vicinal oxygen chelate (VOC) domain LLC55_03515 IPR018146 Glyoxalase I, conserved site LLC55_03515 IPR004361 Glyoxalase I LLC55_03515 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LLC55_03515 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LLC55_03520 IPR007939 Copper resistance B precursor LLC55_03525 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal LLC55_03525 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_03525 IPR034279 Copper resistance protein, third cupredoxin domain LLC55_03525 IPR034282 Copper resistance protein CopA, second cupredoxin domain LLC55_03525 IPR034284 Copper resistance protein, first cupredoxin domain LLC55_03525 IPR006376 Copper-resistance protein CopA LLC55_03525 IPR002355 Multicopper oxidase, copper-binding site LLC55_03525 IPR033138 Multicopper oxidases, conserved site LLC55_03525 IPR011707 Multicopper oxidase, type 3 LLC55_03525 IPR011706 Multicopper oxidase, type 2 LLC55_03525 IPR008972 Cupredoxin LLC55_03525 IPR001117 Multicopper oxidase, type 1 LLC55_03540 IPR001567 Peptidase M3A/M3B catalytic domain LLC55_03540 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 LLC55_03550 IPR018201 Beta-ketoacyl synthase, active site LLC55_03550 IPR014031 Beta-ketoacyl synthase, C-terminal LLC55_03550 IPR014030 Beta-ketoacyl synthase, N-terminal LLC55_03550 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LLC55_03550 IPR016039 Thiolase-like LLC55_03550 IPR000794 Beta-ketoacyl synthase LLC55_03555 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA LLC55_03555 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ LLC55_03555 IPR029069 HotDog domain superfamily LLC55_03560 IPR001126 UmuC domain LLC55_03560 IPR036775 DNA polymerase, Y-family, little finger domain superfamily LLC55_03560 IPR017961 DNA polymerase, Y-family, little finger domain LLC55_03560 IPR022880 DNA polymerase IV LLC55_03565 IPR006439 HAD hydrolase, subfamily IA LLC55_03565 IPR041492 Haloacid dehalogenase-like hydrolase LLC55_03565 IPR023214 HAD superfamily LLC55_03565 IPR023198 Phosphoglycolate phosphatase-like, domain 2 LLC55_03565 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic LLC55_03565 IPR037512 Phosphoglycolate phosphatase, prokaryotic LLC55_03565 IPR036412 HAD-like superfamily LLC55_03575 IPR000614 Free Met sulfoxide reductase conserved site LLC55_03575 IPR003018 GAF domain LLC55_03575 IPR029016 GAF-like domain superfamily LLC55_03580 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03580 IPR004472 Dethiobiotin synthase BioD LLC55_03590 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family LLC55_03590 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily LLC55_03595 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_03595 IPR001650 Helicase, C-terminal LLC55_03595 IPR014014 RNA helicase, DEAD-box type, Q motif LLC55_03595 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LLC55_03595 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03595 IPR011545 DEAD/DEAH box helicase domain LLC55_03595 IPR028622 ATP-dependent RNA helicase RhlE LLC55_03605 IPR034333 Glutathione S-transferases, class Zeta , N-terminal LLC55_03605 IPR034330 Glutathione S-transferases, class Zeta , C-terminal LLC55_03605 IPR005955 Glutathione S-transferases, class Zeta LLC55_03605 IPR040079 Glutathione Transferase family LLC55_03605 IPR036282 Glutathione S-transferase, C-terminal domain superfamily LLC55_03605 IPR010987 Glutathione S-transferase, C-terminal-like LLC55_03605 IPR036249 Thioredoxin-like superfamily LLC55_03605 IPR004045 Glutathione S-transferase, N-terminal LLC55_03610 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03610 IPR006321 Pilus retraction protein PilT LLC55_03610 IPR001482 Type II/IV secretion system protein LLC55_03630 IPR000644 CBS domain LLC55_03630 IPR005857 Cystathionine beta-synthase LLC55_03630 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_03630 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_03635 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme LLC55_03635 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_03635 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_03635 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_03645 IPR036291 NAD(P)-binding domain superfamily LLC55_03645 IPR001509 NAD-dependent epimerase/dehydratase LLC55_03675 IPR001207 Transposase, mutator type LLC55_03685 IPR003593 AAA+ ATPase domain LLC55_03685 IPR003439 ABC transporter-like LLC55_03685 IPR017871 ABC transporter, conserved site LLC55_03685 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03695 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_03695 IPR001308 Electron transfer flavoprotein alpha subunit/FixB LLC55_03695 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal LLC55_03695 IPR029035 DHS-like NAD/FAD-binding domain superfamily LLC55_03695 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal LLC55_03695 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site LLC55_03695 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal LLC55_03700 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site LLC55_03700 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal LLC55_03700 IPR012255 Electron transfer flavoprotein, beta subunit LLC55_03700 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal LLC55_03700 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_03705 IPR005888 dTDP-glucose 4,6-dehydratase LLC55_03705 IPR016040 NAD(P)-binding domain LLC55_03705 IPR036291 NAD(P)-binding domain superfamily LLC55_03710 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form LLC55_03710 IPR005835 Nucleotidyl transferase domain LLC55_03710 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_03715 IPR011051 RmlC-like cupin domain superfamily LLC55_03715 IPR014710 RmlC-like jelly roll fold LLC55_03715 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related LLC55_03720 IPR029903 RmlD-like substrate binding domain LLC55_03720 IPR005913 dTDP-4-dehydrorhamnose reductase family LLC55_03720 IPR036291 NAD(P)-binding domain superfamily LLC55_03725 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase LLC55_03725 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal LLC55_03725 IPR005835 Nucleotidyl transferase domain LLC55_03725 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_03725 IPR014710 RmlC-like jelly roll fold LLC55_03725 IPR011051 RmlC-like cupin domain superfamily LLC55_03730 IPR005841 Alpha-D-phosphohexomutase superfamily LLC55_03730 IPR016066 Alpha-D-phosphohexomutase, conserved site LLC55_03730 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III LLC55_03730 IPR005843 Alpha-D-phosphohexomutase, C-terminal LLC55_03730 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily LLC55_03730 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III LLC55_03730 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II LLC55_03730 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I LLC55_03735 IPR004163 Coenzyme A transferase binding site LLC55_03735 IPR004165 Coenzyme A transferase family I LLC55_03735 IPR012792 3-oxoacid CoA-transferase, subunit A LLC55_03735 IPR037171 NagB/RpiA transferase-like LLC55_03740 IPR012791 3-oxoacid CoA-transferase, subunit B LLC55_03740 IPR004165 Coenzyme A transferase family I LLC55_03740 IPR004164 Coenzyme A transferase active site LLC55_03740 IPR037171 NagB/RpiA transferase-like LLC55_03745 IPR032719 Glycosyltransferase WbsX LLC55_03745 IPR007739 Rhamnan synthesis F LLC55_03750 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_03750 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase LLC55_03750 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_03765 IPR005586 ABC-type transport auxiliary lipoprotein component LLC55_03765 IPR003399 Mce/MlaD LLC55_03770 IPR003593 AAA+ ATPase domain LLC55_03770 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl LLC55_03770 IPR017871 ABC transporter, conserved site LLC55_03770 IPR003439 ABC transporter-like LLC55_03770 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03775 IPR003453 ABC transport permease subunit MlaE, Proteobacteria LLC55_03775 IPR030802 ABC transporter permease MalE LLC55_03785 IPR027444 Histone-like protein H-NS, C-terminal domain LLC55_03785 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily LLC55_03785 IPR001801 Histone-like protein H-NS LLC55_03790 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily LLC55_03790 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain LLC55_03790 IPR033730 Prokaryote proline-tRNA ligase core domain LLC55_03790 IPR004154 Anticodon-binding LLC55_03790 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type LLC55_03790 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 LLC55_03790 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_03790 IPR036621 Anticodon-binding domain superfamily LLC55_03790 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) LLC55_03790 IPR002316 Proline-tRNA ligase, class IIa LLC55_03800 IPR000462 CDP-alcohol phosphatidyltransferase LLC55_03800 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase LLC55_03825 IPR002559 Transposase, IS4-like LLC55_03825 IPR008490 Transposase InsH, N-terminal LLC55_03835 IPR023664 Murein transglycosylase-C LLC55_03835 IPR024570 Murein transglycosylase-C, N-terminal LLC55_03835 IPR000189 Prokaryotic transglycosylase, active site LLC55_03835 IPR008258 Transglycosylase SLT domain 1 LLC55_03835 IPR023346 Lysozyme-like domain superfamily LLC55_03850 IPR002559 Transposase, IS4-like LLC55_03850 IPR008490 Transposase InsH, N-terminal LLC55_03890 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_03890 IPR002300 Aminoacyl-tRNA synthetase, class Ia LLC55_03890 IPR033705 Valyl tRNA synthetase, anticodon-binding domain LLC55_03890 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LLC55_03890 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_03890 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LLC55_03890 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm LLC55_03890 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm LLC55_03890 IPR002303 Valine-tRNA ligase LLC55_03890 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily LLC55_03890 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain LLC55_03905 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B LLC55_03905 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal LLC55_03905 IPR023042 Peptidase M17, leucine aminopeptidase LLC55_03905 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal LLC55_03915 IPR030923 LPS export ABC transporter permease LptG LLC55_03915 IPR005495 Permease LptG/LptF-related LLC55_03930 IPR011932 Tyrosine recombinase XerD LLC55_03930 IPR004107 Integrase, SAM-like, N-terminal LLC55_03930 IPR010998 Integrase/recombinase, N-terminal LLC55_03930 IPR023009 Tyrosine recombinase XerC/XerD LLC55_03930 IPR013762 Integrase-like, catalytic domain superfamily LLC55_03930 IPR011010 DNA breaking-rejoining enzyme, catalytic core LLC55_03930 IPR002104 Integrase, catalytic domain LLC55_03935 IPR013766 Thioredoxin domain LLC55_03935 IPR033954 Disulphide bond isomerase, DsbC/G LLC55_03935 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal LLC55_03935 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily LLC55_03935 IPR012336 Thioredoxin-like fold LLC55_03935 IPR036249 Thioredoxin-like superfamily LLC55_03935 IPR017937 Thioredoxin, conserved site LLC55_03940 IPR036921 PurM-like, N-terminal domain superfamily LLC55_03940 IPR036676 PurM-like, C-terminal domain superfamily LLC55_03940 IPR010918 PurM-like, C-terminal domain LLC55_03940 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily LLC55_03940 IPR010073 Phosphoribosylformylglycinamidine synthase PurL LLC55_03940 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal LLC55_03940 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain LLC55_03940 IPR017926 Glutamine amidotransferase LLC55_03940 IPR029062 Class I glutamine amidotransferase-like LLC55_03945 IPR008640 Head domain of trimeric autotransporter adhesin LLC55_03945 IPR008635 Coiled stalk of trimeric autotransporter adhesin LLC55_03945 IPR024973 ESPR domain LLC55_03945 IPR011049 Serralysin-like metalloprotease, C-terminal LLC55_03945 IPR005594 YadA-like, C-terminal LLC55_03955 IPR001598 Transposase, IS30, conserved site LLC55_03955 IPR036397 Ribonuclease H superfamily LLC55_03955 IPR012337 Ribonuclease H-like superfamily LLC55_03955 IPR001584 Integrase, catalytic core LLC55_03955 IPR009057 Homeobox-like domain superfamily LLC55_03965 IPR042181 Type II secretion system, protein E, N-terminal LLC55_03965 IPR007831 General secretory system II, protein E, N-terminal LLC55_03965 IPR037257 General secretory system II, protein E, N-terminal superfamily LLC55_03965 IPR013369 Type II secretion system GspE LLC55_03965 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_03965 IPR003593 AAA+ ATPase domain LLC55_03965 IPR001482 Type II/IV secretion system protein LLC55_03975 IPR003004 GspF/PilC family LLC55_03975 IPR001992 Type II secretion system conserved site LLC55_03975 IPR018076 Type II secretion system F domain LLC55_03975 IPR042094 Type II secretion system F domain superfamily LLC55_03980 IPR010054 General secretion pathway protein G LLC55_03980 IPR013545 Type II secretion system protein G LLC55_03980 IPR012902 Prokaryotic N-terminal methylation site LLC55_03980 IPR000983 Bacterial general secretion pathway protein G-type pilin LLC55_03985 IPR022346 General secretion pathway, GspH LLC55_03985 IPR002416 Type II secretion system protein H LLC55_03990 IPR012902 Prokaryotic N-terminal methylation site LLC55_03990 IPR010052 Type II secretion system protein I LLC55_03995 IPR012902 Prokaryotic N-terminal methylation site LLC55_04000 IPR038072 GspK, central domain superfamily LLC55_04000 IPR005628 General secretion pathway protein K LLC55_04005 IPR007813 Fimbrial assembly PilN LLC55_04010 IPR034756 Type II secretion system (T2SS), protein M subtype b LLC55_04020 IPR004846 Type II/III secretion system LLC55_04020 IPR013356 Type II secretion system GspD LLC55_04020 IPR004845 Type II secretion system GspD, conserved site LLC55_04020 IPR038591 NolW-like superfamily LLC55_04020 IPR005644 NolW-like LLC55_04020 IPR001775 GspD/PilQ family LLC55_04035 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_04035 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LLC55_04035 IPR017722 Phosphonate utilization transcriptional regulator PhnR LLC55_04035 IPR000524 Transcription regulator HTH, GntR LLC55_04035 IPR011663 UbiC transcription regulator-associated LLC55_04035 IPR036390 Winged helix DNA-binding domain superfamily LLC55_04050 IPR012910 TonB-dependent receptor, plug domain LLC55_04050 IPR039423 TonB-dependent receptor-like LLC55_04050 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_04050 IPR010916 TonB box, conserved site LLC55_04050 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_04050 IPR010917 TonB-dependent receptor, conserved site LLC55_04050 IPR030149 TonB-dependent siderophore receptor FcuA/FatA LLC55_04050 IPR010105 TonB-dependent siderophore receptor LLC55_04050 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_04060 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_04080 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 LLC55_04080 IPR021127 CRISPR-associated endonuclease Cas2 LLC55_04085 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain LLC55_04085 IPR019856 CRISPR-associated protein Cas1, DVULG subtype LLC55_04085 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain LLC55_04085 IPR002729 CRISPR-associated protein Cas1 LLC55_04105 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d LLC55_04105 IPR013422 CRISPR-associated protein Cas5, N-terminal LLC55_04105 IPR021124 CRISPR-associated protein, Cas5 LLC55_04120 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein LLC55_04120 IPR029001 Inosine triphosphate pyrophosphatase-like LLC55_04125 IPR003772 Large ribosomal RNA subunit accumulation protein YceD LLC55_04125 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria LLC55_04130 IPR011332 Zinc-binding ribosomal protein LLC55_04130 IPR002677 Ribosomal protein L32p LLC55_04135 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 LLC55_04135 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LLC55_04135 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal LLC55_04135 IPR016039 Thiolase-like LLC55_04145 IPR001227 Acyl transferase domain superfamily LLC55_04145 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LLC55_04145 IPR014043 Acyl transferase LLC55_04145 IPR024925 Malonyl CoA-acyl carrier protein transacylase LLC55_04145 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type LLC55_04145 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LLC55_04150 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_04150 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_04150 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase LLC55_04150 IPR036291 NAD(P)-binding domain superfamily LLC55_04155 IPR006162 Phosphopantetheine attachment site LLC55_04155 IPR009081 Phosphopantetheine binding ACP domain LLC55_04155 IPR003231 Acyl carrier protein (ACP) LLC55_04155 IPR036736 ACP-like superfamily LLC55_04160 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 LLC55_04160 IPR014031 Beta-ketoacyl synthase, C-terminal LLC55_04160 IPR014030 Beta-ketoacyl synthase, N-terminal LLC55_04160 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LLC55_04160 IPR016039 Thiolase-like LLC55_04160 IPR000794 Beta-ketoacyl synthase LLC55_04160 IPR018201 Beta-ketoacyl synthase, active site LLC55_04165 IPR005801 ADC synthase LLC55_04165 IPR019999 Anthranilate synthase component I-like LLC55_04165 IPR006805 Anthranilate synthase component I, N-terminal LLC55_04165 IPR015890 Chorismate-utilising enzyme, C-terminal LLC55_04165 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I LLC55_04170 IPR003770 Endolytic murein transglycosylase LLC55_04175 IPR004622 DNA polymerase III, delta prime subunit LLC55_04175 IPR015199 DNA polymerase III, delta subunit, C-terminal LLC55_04175 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04205 IPR003593 AAA+ ATPase domain LLC55_04205 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal LLC55_04205 IPR002078 RNA polymerase sigma factor 54 interaction domain LLC55_04205 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04205 IPR025944 Sigma-54 interaction domain, conserved site LLC55_04205 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR LLC55_04205 IPR009057 Homeobox-like domain superfamily LLC55_04205 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LLC55_04205 IPR002197 DNA binding HTH domain, Fis-type LLC55_04210 IPR012695 2-methylisocitrate lyase LLC55_04210 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_04210 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site LLC55_04210 IPR039556 ICL/PEPM domain LLC55_04210 IPR040442 Pyruvate kinase-like domain superfamily LLC55_04215 IPR011278 2-methylcitrate synthase/citrate synthase type I LLC55_04215 IPR016142 Citrate synthase-like, large alpha subdomain LLC55_04215 IPR016143 Citrate synthase-like, small alpha subdomain LLC55_04215 IPR002020 Citrate synthase LLC55_04215 IPR019810 Citrate synthase active site LLC55_04215 IPR024176 Citrate synthase, bacterial-type LLC55_04215 IPR036969 Citrate synthase superfamily LLC55_04220 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain LLC55_04220 IPR036008 Aconitase, iron-sulfur domain LLC55_04220 IPR006249 Aconitase/Iron-responsive element-binding protein 2 LLC55_04220 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel LLC55_04220 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 LLC55_04220 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent LLC55_04220 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain LLC55_04235 IPR012709 2-methyl-aconitate isomerase PrpF LLC55_04235 IPR007400 PrpF protein LLC55_04240 IPR008490 Transposase InsH, N-terminal LLC55_04240 IPR002559 Transposase, IS4-like LLC55_04245 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_04245 IPR010105 TonB-dependent siderophore receptor LLC55_04245 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_04245 IPR039426 Vitamin B12 transporter BtuB-like LLC55_04245 IPR012910 TonB-dependent receptor, plug domain LLC55_04265 IPR002559 Transposase, IS4-like LLC55_04265 IPR008490 Transposase InsH, N-terminal LLC55_04295 IPR012337 Ribonuclease H-like superfamily LLC55_04295 IPR025246 Transposase IS30-like HTH domain LLC55_04295 IPR001584 Integrase, catalytic core LLC55_04295 IPR001598 Transposase, IS30, conserved site LLC55_04295 IPR036397 Ribonuclease H superfamily LLC55_04305 IPR037944 Peroxiredoxin-5-like LLC55_04305 IPR013740 Redoxin LLC55_04305 IPR013766 Thioredoxin domain LLC55_04305 IPR036249 Thioredoxin-like superfamily LLC55_04315 IPR002939 Chaperone DnaJ, C-terminal LLC55_04315 IPR001623 DnaJ domain LLC55_04315 IPR018253 DnaJ domain, conserved site LLC55_04315 IPR008971 HSP40/DnaJ peptide-binding LLC55_04315 IPR036869 Chaperone J-domain superfamily LLC55_04315 IPR023859 DNA-binding protein, curved-DNA LLC55_04320 IPR011006 CheY-like superfamily LLC55_04320 IPR001789 Signal transduction response regulator, receiver domain LLC55_04325 IPR020980 Menbrane protein HflK, N-terminal LLC55_04325 IPR001972 Stomatin family LLC55_04325 IPR001107 Band 7 domain LLC55_04325 IPR036013 Band 7/SPFH domain superfamily LLC55_04325 IPR010201 HflK LLC55_04330 IPR001107 Band 7 domain LLC55_04330 IPR036013 Band 7/SPFH domain superfamily LLC55_04330 IPR010200 HflC LLC55_04340 IPR018220 Adenylosuccinate synthase, GTP-binding site LLC55_04340 IPR033128 Adenylosuccinate synthase, active site LLC55_04340 IPR042109 Adenylosuccinate synthetase, domain 1 LLC55_04340 IPR042110 Adenylosuccinate synthetase, domain 2 LLC55_04340 IPR042111 Adenylosuccinate synthetase, domain 3 LLC55_04340 IPR001114 Adenylosuccinate synthetase LLC55_04340 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04345 IPR042097 Aminopeptidase N-like , N-terminal LLC55_04345 IPR034016 Aminopeptidase N-type LLC55_04345 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase LLC55_04345 IPR014782 Peptidase M1, membrane alanine aminopeptidase LLC55_04345 IPR024571 ERAP1-like C-terminal domain LLC55_04360 IPR008490 Transposase InsH, N-terminal LLC55_04380 IPR002559 Transposase, IS4-like LLC55_04380 IPR008490 Transposase InsH, N-terminal LLC55_04400 IPR004960 Bacterial lipid A biosynthesis acyltransferase LLC55_04400 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase LLC55_04405 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal LLC55_04405 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily LLC55_04405 IPR039901 3-deoxy-D-manno-octulosonic acid transferase LLC55_04410 IPR003423 Outer membrane efflux protein LLC55_04410 IPR010130 Type I secretion outer membrane protein, TolC LLC55_04415 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase LLC55_04415 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_04430 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_04430 IPR000847 Transcription regulator HTH, LysR LLC55_04430 IPR036390 Winged helix DNA-binding domain superfamily LLC55_04435 IPR004430 3-isopropylmalate dehydratase, large subunit LLC55_04435 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 LLC55_04435 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain LLC55_04435 IPR018136 Aconitase family, 4Fe-4S cluster binding site LLC55_04435 IPR036008 Aconitase, iron-sulfur domain LLC55_04435 IPR033941 3-Isopropylmalate dehydratase, catalytic domain LLC55_04440 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain LLC55_04440 IPR033940 3-isopropylmalate dehydratase, swivel domain LLC55_04440 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel LLC55_04440 IPR004431 3-isopropylmalate dehydratase, small subunit LLC55_04450 IPR024084 Isopropylmalate dehydrogenase-like domain LLC55_04450 IPR004429 Isopropylmalate dehydrogenase LLC55_04450 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site LLC55_04455 IPR000891 Pyruvate carboxyltransferase LLC55_04455 IPR013785 Aldolase-type TIM barrel LLC55_04455 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain LLC55_04455 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site LLC55_04455 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily LLC55_04455 IPR005671 2-isopropylmalate synthase, bacterial-type LLC55_04460 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_04460 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_04460 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site LLC55_04460 IPR005789 Threonine dehydratase, catabolic LLC55_04470 IPR029035 DHS-like NAD/FAD-binding domain superfamily LLC55_04470 IPR029061 Thiamin diphosphate-binding fold LLC55_04470 IPR012000 Thiamine pyrophosphate enzyme, central domain LLC55_04470 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LLC55_04470 IPR000399 TPP-binding enzyme, conserved site LLC55_04470 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LLC55_04470 IPR012846 Acetolactate synthase, large subunit, biosynthetic LLC55_04470 IPR039368 Acetolactate synthase large subunit, TPP binding domain LLC55_04475 IPR036291 NAD(P)-binding domain superfamily LLC55_04475 IPR013116 Ketol-acid reductoisomerase, N-terminal LLC55_04475 IPR000506 Ketol-acid reductoisomerase, C-terminal LLC55_04475 IPR013023 Ketol-acid reductoisomerase LLC55_04475 IPR014359 Ketol-acid reductoisomerase, prokaryotic LLC55_04475 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_04485 IPR037509 Phosphomethylpyrimidine synthase LLC55_04485 IPR025747 ThiC-associated domain LLC55_04485 IPR038521 ThiC/Bza superfamily LLC55_04485 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B LLC55_04490 IPR039420 Transcriptional regulatory protein WalR-like LLC55_04490 IPR040970 CadC C-terminal domain 1 LLC55_04490 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_04490 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_04490 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_04490 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_04495 IPR018062 HTH domain AraC-type, conserved site LLC55_04495 IPR029062 Class I glutamine amidotransferase-like LLC55_04495 IPR009057 Homeobox-like domain superfamily LLC55_04495 IPR018060 DNA binding HTH domain, AraC-type LLC55_04495 IPR020449 Transcription regulator HTH, AraC- type LLC55_04500 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_04500 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_04500 IPR012910 TonB-dependent receptor, plug domain LLC55_04500 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_04500 IPR010101 TonB-dependent vitamin B12 transporter BtuB LLC55_04500 IPR010917 TonB-dependent receptor, conserved site LLC55_04500 IPR039426 Vitamin B12 transporter BtuB-like LLC55_04500 IPR010916 TonB box, conserved site LLC55_04515 IPR036649 Inorganic pyrophosphatase superfamily LLC55_04515 IPR008162 Inorganic pyrophosphatase LLC55_04535 IPR004131 Pyrophosphate-energised proton pump LLC55_04555 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 LLC55_04555 IPR035966 Phosphofructokinase superfamily LLC55_04555 IPR000023 Phosphofructokinase domain LLC55_04555 IPR022953 ATP-dependent 6-phosphofructokinase LLC55_04560 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04560 IPR033690 Adenylate kinase, conserved site LLC55_04560 IPR000850 Adenylate kinase/UMP-CMP kinase LLC55_04565 IPR036615 Mur ligase, C-terminal domain superfamily LLC55_04565 IPR036565 Mur-like, catalytic domain superfamily LLC55_04565 IPR005757 Murein peptide ligase LLC55_04565 IPR000713 Mur ligase, N-terminal catalytic domain LLC55_04565 IPR013221 Mur ligase, central LLC55_04565 IPR004101 Mur ligase, C-terminal LLC55_04575 IPR021134 Bestrophin/UPF0187 LLC55_04590 IPR036249 Thioredoxin-like superfamily LLC55_04590 IPR004046 Glutathione S-transferase, C-terminal LLC55_04590 IPR004045 Glutathione S-transferase, N-terminal LLC55_04590 IPR040079 Glutathione Transferase family LLC55_04590 IPR036282 Glutathione S-transferase, C-terminal domain superfamily LLC55_04590 IPR010987 Glutathione S-transferase, C-terminal-like LLC55_04595 IPR001236 Lactate/malate dehydrogenase, N-terminal LLC55_04595 IPR036291 NAD(P)-binding domain superfamily LLC55_04595 IPR001557 L-lactate/malate dehydrogenase LLC55_04595 IPR022383 Lactate/malate dehydrogenase, C-terminal LLC55_04595 IPR010945 Malate dehydrogenase, type 2 LLC55_04595 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal LLC55_04600 IPR029000 Cyclophilin-like domain superfamily LLC55_04600 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site LLC55_04600 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain LLC55_04605 IPR006298 GTP-binding protein TypA LLC55_04605 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_04605 IPR005225 Small GTP-binding protein domain LLC55_04605 IPR031157 Tr-type G domain, conserved site LLC55_04605 IPR004161 Translation elongation factor EFTu-like, domain 2 LLC55_04605 IPR000795 Transcription factor, GTP-binding domain LLC55_04605 IPR000640 Elongation factor EFG, domain V-like LLC55_04605 IPR035651 BipA, domain V LLC55_04605 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04605 IPR035647 EF-G domain III/V-like LLC55_04605 IPR042116 GTP-binding protein TypA/BipA, C-terminal LLC55_04625 IPR013785 Aldolase-type TIM barrel LLC55_04625 IPR002480 DAHP synthetase, class II LLC55_04635 IPR023380 DsbB-like superfamily LLC55_04635 IPR003752 Disulphide bond formation protein DsbB/BdbC LLC55_04635 IPR022920 Disulphide bond formation protein DsbB LLC55_04670 IPR008490 Transposase InsH, N-terminal LLC55_04720 IPR009057 Homeobox-like domain superfamily LLC55_04720 IPR001598 Transposase, IS30, conserved site LLC55_04720 IPR036397 Ribonuclease H superfamily LLC55_04720 IPR001584 Integrase, catalytic core LLC55_04720 IPR012337 Ribonuclease H-like superfamily LLC55_04755 IPR002559 Transposase, IS4-like LLC55_04755 IPR008490 Transposase InsH, N-terminal LLC55_04775 IPR030395 Glycerophosphodiester phosphodiesterase domain LLC55_04775 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily LLC55_04800 IPR024084 Isopropylmalate dehydrogenase-like domain LLC55_04800 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site LLC55_04800 IPR040978 Hypothetical protein TT1725 LLC55_04845 IPR008490 Transposase InsH, N-terminal LLC55_04855 IPR005215 Trigger factor LLC55_04855 IPR008880 Trigger factor, C-terminal LLC55_04855 IPR037041 Trigger factor, C-terminal domain superfamily LLC55_04855 IPR008881 Trigger factor, ribosome-binding, bacterial LLC55_04855 IPR036611 Trigger factor ribosome-binding domain superfamily LLC55_04855 IPR027304 Trigger factor/SurA domain superfamily LLC55_04860 IPR001907 ATP-dependent Clp protease proteolytic subunit LLC55_04860 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA LLC55_04860 IPR033135 ClpP, histidine active site LLC55_04860 IPR018215 ClpP, Ser active site LLC55_04860 IPR029045 ClpP/crotonase-like domain superfamily LLC55_04865 IPR003959 ATPase, AAA-type, core LLC55_04865 IPR010603 Zinc finger, ClpX C4-type LLC55_04865 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04865 IPR004487 Clp protease, ATP-binding subunit ClpX LLC55_04865 IPR019489 Clp ATPase, C-terminal LLC55_04865 IPR038366 Zinc finger, ClpX C4-type superfamily LLC55_04865 IPR003593 AAA+ ATPase domain LLC55_04870 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_04870 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_04870 IPR003593 AAA+ ATPase domain LLC55_04870 IPR003959 ATPase, AAA-type, core LLC55_04870 IPR027543 Lon protease, bacterial LLC55_04870 IPR004815 Lon protease, bacterial/eukaryotic-type LLC55_04870 IPR008269 Peptidase S16, Lon proteolytic domain LLC55_04870 IPR027065 Lon protease LLC55_04870 IPR003111 Lon, substrate-binding domain LLC55_04870 IPR008268 Peptidase S16, active site LLC55_04870 IPR015947 PUA-like superfamily LLC55_04870 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_04875 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily LLC55_04875 IPR000119 Histone-like DNA-binding protein LLC55_04875 IPR020816 Histone-like DNA-binding protein, conserved site LLC55_04895 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type LLC55_04895 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site LLC55_04900 IPR007921 CHAP domain LLC55_04900 IPR018392 LysM domain LLC55_04900 IPR036779 LysM domain superfamily LLC55_04900 IPR038765 Papain-like cysteine peptidase superfamily LLC55_04905 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain LLC55_04905 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain LLC55_04905 IPR017782 Hydroxyacylglutathione hydrolase LLC55_04905 IPR001279 Metallo-beta-lactamase LLC55_04905 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_04915 IPR002156 Ribonuclease H domain LLC55_04915 IPR022892 Ribonuclease HI LLC55_04915 IPR036397 Ribonuclease H superfamily LLC55_04915 IPR012337 Ribonuclease H-like superfamily LLC55_04920 IPR012337 Ribonuclease H-like superfamily LLC55_04920 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain LLC55_04920 IPR006309 DNA polymerase 3, epsilon subunit LLC55_04920 IPR013520 Exonuclease, RNase T/DNA polymerase III LLC55_04920 IPR036397 Ribonuclease H superfamily LLC55_04930 IPR001932 PPM-type phosphatase domain LLC55_04930 IPR036457 PPM-type phosphatase domain superfamily LLC55_04930 IPR015655 Protein phosphatase 2C family LLC55_04955 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_04955 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_04955 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_04955 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_04955 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_04955 IPR006531 Gp5 N-terminal LLC55_04990 IPR010998 Integrase/recombinase, N-terminal LLC55_04990 IPR025166 Integrase, DNA-binding domain LLC55_04990 IPR038488 Integrase, DNA-binding domain superfamily LLC55_04990 IPR002104 Integrase, catalytic domain LLC55_04990 IPR013762 Integrase-like, catalytic domain superfamily LLC55_04990 IPR011010 DNA breaking-rejoining enzyme, catalytic core LLC55_05000 IPR002201 Glycosyl transferase, family 9 LLC55_05005 IPR022826 3-deoxy-D-manno-octulosonic acid kinase LLC55_05005 IPR011009 Protein kinase-like domain superfamily LLC55_05010 IPR013471 Ribonuclease Z/BN LLC55_05010 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_05010 IPR001279 Metallo-beta-lactamase LLC55_05015 IPR007197 Radical SAM LLC55_05015 IPR010505 Molybdenum cofactor synthesis C-terminal LLC55_05015 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site LLC55_05015 IPR013483 Molybdenum cofactor biosynthesis protein A LLC55_05015 IPR006638 Elp3/MiaB/NifB LLC55_05015 IPR013785 Aldolase-type TIM barrel LLC55_05025 IPR023045 Molybdenum cofactor biosynthesis C LLC55_05025 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain LLC55_05025 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily LLC55_05030 IPR012675 Beta-grasp domain superfamily LLC55_05030 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp LLC55_05030 IPR003749 Sulfur carrier ThiS/MoaD-like LLC55_05035 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily LLC55_05035 IPR003448 Molybdopterin biosynthesis MoaE LLC55_05050 IPR022754 DNA polymerase III, gamma subunit, domain III LLC55_05050 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV LLC55_05050 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal LLC55_05050 IPR001270 ClpA/B family LLC55_05050 IPR003593 AAA+ ATPase domain LLC55_05050 IPR012763 DNA polymerase III, subunit gamma/ tau LLC55_05050 IPR021029 DNA polymerase III, tau subunit, domain V LLC55_05050 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05050 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily LLC55_05055 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily LLC55_05055 IPR004401 Nucleoid-associated protein YbaB/EbfC family LLC55_05060 IPR015967 Recombination protein RecR, conserved site LLC55_05060 IPR000093 DNA recombination protein RecR LLC55_05060 IPR034137 RecR, TOPRIM domain LLC55_05060 IPR006171 TOPRIM domain LLC55_05060 IPR023627 Recombination protein RecR LLC55_05060 IPR023628 Recombination protein RecR, C4-type zinc finger LLC55_05065 IPR036265 HIT-like superfamily LLC55_05065 IPR019808 Histidine triad, conserved site LLC55_05065 IPR001310 Histidine triad (HIT) protein LLC55_05065 IPR011146 HIT-like domain LLC55_05075 IPR002931 Transglutaminase-like LLC55_05075 IPR021878 Protein-glutamine gamma-glutamyltransferase TgpA, N-terminal LLC55_05075 IPR038765 Papain-like cysteine peptidase superfamily LLC55_05075 IPR025403 Domain of unknown function DUF4129 LLC55_05085 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05085 IPR041628 ChlI/MoxR, AAA lid domain LLC55_05085 IPR011703 ATPase, AAA-3 LLC55_05105 IPR036821 Peptide deformylase superfamily LLC55_05105 IPR023635 Peptide deformylase LLC55_05150 IPR002559 Transposase, IS4-like LLC55_05150 IPR008490 Transposase InsH, N-terminal LLC55_05175 IPR004480 Monothiol glutaredoxin-related LLC55_05175 IPR014434 Monothiol glutaredoxin LLC55_05175 IPR033658 Glutaredoxin, PICOT-like LLC55_05175 IPR002109 Glutaredoxin LLC55_05175 IPR036249 Thioredoxin-like superfamily LLC55_05180 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LLC55_05180 IPR002509 NodB homology domain LLC55_05180 IPR026402 Chitooligosaccharide deacetylase NodB LLC55_05200 IPR004839 Aminotransferase, class I/classII LLC55_05200 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_05200 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_05200 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_05205 IPR004881 Ribosome biogenesis GTPase RsgA LLC55_05205 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain LLC55_05205 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05205 IPR010914 RsgA GTPase domain LLC55_05220 IPR006047 Glycosyl hydrolase, family 13, catalytic domain LLC55_05220 IPR013780 Glycosyl hydrolase, all-beta LLC55_05220 IPR017853 Glycoside hydrolase superfamily LLC55_05230 IPR039672 Lactose permease-like LLC55_05230 IPR036259 MFS transporter superfamily LLC55_05230 IPR018043 Sodium:galactoside symporter, conserved site LLC55_05240 IPR000843 LacI-type HTH domain LLC55_05240 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_05240 IPR028082 Periplasmic binding protein-like I LLC55_05240 IPR023588 Transcription regulator HTH, PurR LLC55_05245 IPR036291 NAD(P)-binding domain superfamily LLC55_05245 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_05245 IPR011283 Acetoacetyl-CoA reductase LLC55_05245 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_05250 IPR004680 Citrate transporter-like domain LLC55_05250 IPR014738 Citrate transporter LLC55_05260 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_05260 IPR001789 Signal transduction response regulator, receiver domain LLC55_05260 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_05260 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_05260 IPR011006 CheY-like superfamily LLC55_05260 IPR039420 Transcriptional regulatory protein WalR-like LLC55_05265 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_05265 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_05265 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_05265 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_05265 IPR013727 Two-component sensor kinase, N-terminal LLC55_05265 IPR005467 Histidine kinase domain LLC55_05265 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_05275 IPR011006 CheY-like superfamily LLC55_05275 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_05275 IPR001789 Signal transduction response regulator, receiver domain LLC55_05275 IPR000792 Transcription regulator LuxR, C-terminal LLC55_05295 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_05295 IPR000847 Transcription regulator HTH, LysR LLC55_05295 IPR036390 Winged helix DNA-binding domain superfamily LLC55_05295 IPR005119 LysR, substrate-binding LLC55_05305 IPR020846 Major facilitator superfamily domain LLC55_05305 IPR005829 Sugar transporter, conserved site LLC55_05305 IPR011701 Major facilitator superfamily LLC55_05305 IPR036259 MFS transporter superfamily LLC55_05305 IPR004736 MFS transporter, metabolite:H symporter LLC55_05310 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) LLC55_05310 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_05310 IPR029151 Periplasmic sensor-like domain superfamily LLC55_05310 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_05310 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_05310 IPR005467 Histidine kinase domain LLC55_05310 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_05310 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_05325 IPR001991 Sodium:dicarboxylate symporter LLC55_05325 IPR018107 Sodium:dicarboxylate symporter, conserved site LLC55_05325 IPR036458 Sodium:dicarboxylate symporter superfamily LLC55_05325 IPR023954 C4-dicarboxylate transport protein LLC55_05330 IPR036291 NAD(P)-binding domain superfamily LLC55_05330 IPR002505 Phosphate acetyl/butaryl transferase LLC55_05330 IPR042112 Phosphate acetyltransferase, domain 2 LLC55_05330 IPR042113 Phosphate acetyltransferase, domain 1 LLC55_05330 IPR037062 Malic enzyme, N-terminal domain superfamily LLC55_05330 IPR012302 Malic enzyme, NAD-binding LLC55_05330 IPR012188 NAD(P)-dependent malic enzyme LLC55_05330 IPR015884 Malic enzyme, conserved site LLC55_05330 IPR012301 Malic enzyme, N-terminal domain LLC55_05360 IPR013785 Aldolase-type TIM barrel LLC55_05360 IPR036206 Thiamin phosphate synthase superfamily LLC55_05360 IPR022998 Thiamine phosphate synthase/TenI LLC55_05360 IPR034291 Thiamine phosphate synthase LLC55_05365 IPR018527 Rubredoxin, iron-binding site LLC55_05365 IPR024935 Rubredoxin domain LLC55_05365 IPR024922 Rubredoxin LLC55_05365 IPR024934 Rubredoxin-like domain LLC55_05370 IPR013026 Tetratricopeptide repeat-containing domain LLC55_05370 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_05370 IPR019734 Tetratricopeptide repeat LLC55_05370 IPR032698 Protein SirB1, N-terminal LLC55_05380 IPR037171 NagB/RpiA transferase-like LLC55_05380 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup LLC55_05380 IPR004788 Ribose 5-phosphate isomerase, type A LLC55_05390 IPR037171 NagB/RpiA transferase-like LLC55_05390 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily LLC55_05390 IPR002698 5-formyltetrahydrofolate cyclo-ligase LLC55_05400 IPR007838 Cell division protein ZapA-like LLC55_05400 IPR036192 Cell division protein ZapA-like superfamily LLC55_05410 IPR011978 Uncharacterised protein family UPF0149 LLC55_05410 IPR036255 YgfB-like superfamily LLC55_05415 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal LLC55_05415 IPR036005 Creatinase/aminopeptidase-like LLC55_05415 IPR000994 Peptidase M24 LLC55_05415 IPR001714 Peptidase M24, methionine aminopeptidase LLC55_05415 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site LLC55_05415 IPR007865 Aminopeptidase P, N-terminal LLC55_05440 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal LLC55_05440 IPR036005 Creatinase/aminopeptidase-like LLC55_05440 IPR000994 Peptidase M24 LLC55_05440 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site LLC55_05440 IPR022846 Xaa-Pro dipeptidase LLC55_05455 IPR023404 Radical SAM, alpha/beta horseshoe LLC55_05455 IPR007197 Radical SAM LLC55_05455 IPR006638 Elp3/MiaB/NifB LLC55_05455 IPR010723 HemN, C-terminal LLC55_05455 IPR034505 Anaerobic coproporphyrinogen-III oxidase LLC55_05455 IPR004559 Heme chaperone HemW-like LLC55_05460 IPR020922 dITP/XTP pyrophosphatase LLC55_05460 IPR002637 Ham1-like protein LLC55_05460 IPR029001 Inosine triphosphate pyrophosphatase-like LLC55_05470 IPR018336 Ribonuclease PH, conserved site LLC55_05470 IPR002381 Ribonuclease PH, bacterial-type LLC55_05470 IPR036345 Exoribonuclease, PH domain 2 superfamily LLC55_05470 IPR027408 PNPase/RNase PH domain superfamily LLC55_05470 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_05470 IPR001247 Exoribonuclease, phosphorolytic domain 1 LLC55_05470 IPR015847 Exoribonuclease, phosphorolytic domain 2 LLC55_05475 IPR013551 Domain of unknown function DUF1732 LLC55_05475 IPR013527 YicC-like, N-terminal LLC55_05475 IPR005229 Conserved hypothetical protein CHP00255 LLC55_05480 IPR008145 Guanylate kinase/L-type calcium channel beta subunit LLC55_05480 IPR008144 Guanylate kinase-like domain LLC55_05480 IPR017665 Guanylate kinase LLC55_05480 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05495 IPR036161 RPB6/omega subunit-like superfamily LLC55_05495 IPR012293 RNA polymerase subunit, RPB6/omega LLC55_05495 IPR006110 RNA polymerase, subunit omega/K/RPB6 LLC55_05495 IPR003716 DNA-directed RNA polymerase, omega subunit LLC55_05500 IPR002912 ACT domain LLC55_05500 IPR012675 Beta-grasp domain superfamily LLC55_05500 IPR003607 HD/PDEase domain LLC55_05500 IPR004095 TGS LLC55_05500 IPR007685 RelA/SpoT LLC55_05500 IPR004811 RelA/SpoT family LLC55_05500 IPR033655 RelA, TGS domain LLC55_05500 IPR012676 TGS-like LLC55_05505 IPR006175 YjgF/YER057c/UK114 family LLC55_05505 IPR006056 RidA family LLC55_05505 IPR019897 RidA, conserved site LLC55_05505 IPR035959 RutC-like superfamily LLC55_05510 IPR004609 ATP-dependent DNA helicase RecG LLC55_05510 IPR011545 DEAD/DEAH box helicase domain LLC55_05510 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_05510 IPR001650 Helicase, C-terminal LLC55_05510 IPR012340 Nucleic acid-binding, OB-fold LLC55_05510 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05510 IPR033454 RecG, wedge domain LLC55_05515 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site LLC55_05515 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain LLC55_05515 IPR023186 Inosine/uridine-preferring nucleoside hydrolase LLC55_05515 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA LLC55_05515 IPR036452 Ribonucleoside hydrolase-like LLC55_05520 IPR042105 Ribosomal protein L31 superfamily LLC55_05520 IPR002150 Ribosomal protein L31 LLC55_05520 IPR034704 L28p-like LLC55_05520 IPR027493 Ribosomal protein L31 type B LLC55_05525 IPR016142 Citrate synthase-like, large alpha subdomain LLC55_05525 IPR016143 Citrate synthase-like, small alpha subdomain LLC55_05525 IPR002020 Citrate synthase LLC55_05525 IPR019810 Citrate synthase active site LLC55_05525 IPR024176 Citrate synthase, bacterial-type LLC55_05525 IPR036969 Citrate synthase superfamily LLC55_05525 IPR010953 Citrate synthase, type I LLC55_05540 IPR001460 Penicillin-binding protein, transpeptidase LLC55_05540 IPR031376 Penicillin-binding protein, OB-like domain LLC55_05540 IPR012338 Beta-lactamase/transpeptidase-like LLC55_05540 IPR023346 Lysozyme-like domain superfamily LLC55_05540 IPR001264 Glycosyl transferase, family 51 LLC55_05540 IPR036950 Penicillin binding protein transglycosylase domain LLC55_05545 IPR005883 Type IV pilus assembly protein PilM LLC55_05545 IPR003494 SHS2 domain inserted in FtsA LLC55_05550 IPR007813 Fimbrial assembly PilN LLC55_05555 IPR007445 Pilus assembly protein, PilO LLC55_05555 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 LLC55_05560 IPR007446 Pilus assembly protein PilP LLC55_05565 IPR004845 Type II secretion system GspD, conserved site LLC55_05565 IPR004846 Type II/III secretion system LLC55_05565 IPR011662 Secretin/TonB, short N-terminal domain LLC55_05565 IPR005644 NolW-like LLC55_05565 IPR038591 NolW-like superfamily LLC55_05565 IPR001775 GspD/PilQ family LLC55_05565 IPR021731 AMIN domain LLC55_05565 IPR013355 Type IV pilus secretin PilQ LLC55_05590 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05590 IPR041628 ChlI/MoxR, AAA lid domain LLC55_05590 IPR011703 ATPase, AAA-3 LLC55_05610 IPR036465 von Willebrand factor A-like domain superfamily LLC55_05610 IPR022933 Uncharacterised protein family UPF0353 LLC55_05610 IPR024163 Aerotolerance regulator, N-terminal LLC55_05610 IPR002035 von Willebrand factor, type A LLC55_05630 IPR033380 Glutamate-aspartate symport protein GltP/GltT LLC55_05630 IPR034703 Proton/glutamate-aspartate symporter GltP LLC55_05630 IPR001991 Sodium:dicarboxylate symporter LLC55_05630 IPR018107 Sodium:dicarboxylate symporter, conserved site LLC55_05630 IPR036458 Sodium:dicarboxylate symporter superfamily LLC55_05635 IPR005478 Transketolase, bacterial-like LLC55_05635 IPR029061 Thiamin diphosphate-binding fold LLC55_05635 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LLC55_05635 IPR005475 Transketolase-like, pyrimidine-binding domain LLC55_05635 IPR033247 Transketolase family LLC55_05635 IPR033248 Transketolase, C-terminal domain LLC55_05635 IPR020826 Transketolase binding site LLC55_05635 IPR005474 Transketolase, N-terminal LLC55_05645 IPR011055 Duplicated hybrid motif LLC55_05645 IPR007340 Opacity-associated protein A LLC55_05645 IPR016047 Peptidase M23 LLC55_05650 IPR018392 LysM domain LLC55_05650 IPR036779 LysM domain superfamily LLC55_05650 IPR038063 L,D-transpeptidase catalytic domain-like LLC55_05650 IPR005490 L,D-transpeptidase catalytic domain LLC55_05675 IPR020845 AMP-binding, conserved site LLC55_05675 IPR000873 AMP-dependent synthetase/ligase LLC55_05675 IPR042099 AMP-dependent synthetase-like superfamily LLC55_05685 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_05685 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase LLC55_05685 IPR036291 NAD(P)-binding domain superfamily LLC55_05685 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_05695 IPR011006 CheY-like superfamily LLC55_05695 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_05695 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_05695 IPR001789 Signal transduction response regulator, receiver domain LLC55_05695 IPR039420 Transcriptional regulatory protein WalR-like LLC55_05695 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_05700 IPR013727 Two-component sensor kinase, N-terminal LLC55_05700 IPR003660 HAMP domain LLC55_05700 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_05700 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_05700 IPR005467 Histidine kinase domain LLC55_05700 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_05700 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_05700 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_05720 IPR003593 AAA+ ATPase domain LLC55_05720 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05720 IPR003439 ABC transporter-like LLC55_05720 IPR017871 ABC transporter, conserved site LLC55_05720 IPR015852 ABC transporter, molybdenum import, ModC LLC55_05720 IPR008995 Molybdate/tungstate binding, C-terminal LLC55_05720 IPR005116 Transport-associated OB, type 1 LLC55_05720 IPR011868 Molybdate ABC transporter, ATP-binding protein LLC55_05720 IPR004606 Molybdenum-pterin binding LLC55_05725 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_05725 IPR035906 MetI-like superfamily LLC55_05725 IPR011867 Molybdate ABC transporter, permease protein LLC55_05730 IPR005950 Molybdate ABC transporter, substrate-binding protein LLC55_05735 IPR005939 Beta-lactamase hydrolase-like LLC55_05735 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_05735 IPR029021 Protein-tyrosine phosphatase-like LLC55_05735 IPR001279 Metallo-beta-lactamase LLC55_05765 IPR036291 NAD(P)-binding domain superfamily LLC55_05765 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain LLC55_05765 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site LLC55_05765 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family LLC55_05765 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain LLC55_05765 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I LLC55_05785 IPR003660 HAMP domain LLC55_05785 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_05785 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_05785 IPR005467 Histidine kinase domain LLC55_05785 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_05785 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_05785 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_05790 IPR011006 CheY-like superfamily LLC55_05790 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_05790 IPR001789 Signal transduction response regulator, receiver domain LLC55_05790 IPR039420 Transcriptional regulatory protein WalR-like LLC55_05790 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_05800 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX LLC55_05800 IPR041107 RimK, PreATP-grasp domain LLC55_05800 IPR011761 ATP-grasp fold LLC55_05800 IPR013815 ATP-grasp fold, subdomain 1 LLC55_05800 IPR013651 ATP-grasp fold, RimK-type LLC55_05800 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK LLC55_05835 IPR018490 Cyclic nucleotide-binding-like LLC55_05835 IPR018488 Cyclic nucleotide-binding, conserved site LLC55_05835 IPR000595 Cyclic nucleotide-binding domain LLC55_05835 IPR005821 Ion transport domain LLC55_05835 IPR014710 RmlC-like jelly roll fold LLC55_05835 IPR028325 Voltage-gated potassium channel LLC55_05840 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_05840 IPR005814 Aminotransferase class-III LLC55_05840 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_05840 IPR004636 Acetylornithine/Succinylornithine transaminase family LLC55_05840 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_05855 IPR002937 Amine oxidase LLC55_05855 IPR014105 Carotenoid/retinoid oxidoreductase LLC55_05855 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_05860 IPR009056 Cytochrome c-like domain LLC55_05860 IPR036909 Cytochrome c-like domain superfamily LLC55_05860 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit LLC55_05875 IPR014068 Azurin LLC55_05875 IPR000923 Blue (type 1) copper domain LLC55_05875 IPR028871 Blue (type 1) copper protein, binding site LLC55_05875 IPR008972 Cupredoxin LLC55_05885 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_05885 IPR005814 Aminotransferase class-III LLC55_05885 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_05885 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase LLC55_05885 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_05895 IPR001584 Integrase, catalytic core LLC55_05895 IPR001598 Transposase, IS30, conserved site LLC55_05895 IPR036397 Ribonuclease H superfamily LLC55_05895 IPR012337 Ribonuclease H-like superfamily LLC55_05895 IPR009057 Homeobox-like domain superfamily LLC55_05905 IPR005042 TAL effector repeat LLC55_05920 IPR005042 TAL effector repeat LLC55_05935 IPR005042 TAL effector repeat LLC55_05950 IPR005042 TAL effector repeat LLC55_05965 IPR000257 Uroporphyrinogen decarboxylase (URO-D) LLC55_05965 IPR006361 Uroporphyrinogen decarboxylase HemE LLC55_05965 IPR038071 UROD/MetE-like superfamily LLC55_05975 IPR030963 3-dehydroquinate synthase family LLC55_05975 IPR030960 3-dehydroquinate synthase domain LLC55_05975 IPR016037 3-dehydroquinate synthase AroB LLC55_05980 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_05980 IPR031322 Shikimate kinase/gluconokinase LLC55_05980 IPR000623 Shikimate kinase/Threonine synthase-like 1 LLC55_05980 IPR023000 Shikimate kinase, conserved site LLC55_05985 IPR012349 FMN-binding split barrel LLC55_05985 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative LLC55_05985 IPR000659 Pyridoxamine 5'-phosphate oxidase LLC55_05985 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal LLC55_05985 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site LLC55_05995 IPR007157 PspA/IM30 LLC55_06020 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain LLC55_06020 IPR016185 Pre-ATP-grasp domain superfamily LLC55_06035 IPR000551 MerR-type HTH domain LLC55_06035 IPR015358 Transcription regulator MerR, DNA binding LLC55_06035 IPR010211 Redox-sensitive transcriptional activator SoxR LLC55_06035 IPR009061 Putative DNA-binding domain superfamily LLC55_06060 IPR033856 Flavin-dependent tryptophan halogenase LLC55_06060 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_06060 IPR006905 Flavin-dependent halogenase LLC55_06065 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_06065 IPR001279 Metallo-beta-lactamase LLC55_06075 IPR009003 Peptidase S1, PA clan LLC55_06080 IPR004841 Amino acid permease/ SLC12A domain LLC55_06085 IPR000792 Transcription regulator LuxR, C-terminal LLC55_06085 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_06085 IPR011006 CheY-like superfamily LLC55_06090 IPR005945 Proline-specific peptidase LLC55_06090 IPR000073 Alpha/beta hydrolase fold-1 LLC55_06090 IPR029058 Alpha/Beta hydrolase fold LLC55_06090 IPR002410 Peptidase S33 LLC55_06100 IPR004841 Amino acid permease/ SLC12A domain LLC55_06100 IPR004840 Amino acid permease, conserved site LLC55_06115 IPR002585 Cytochrome ubiquinol oxidase subunit 1 LLC55_06120 IPR003317 Cytochrome ubiquinol oxidase subunit 2 LLC55_06125 IPR029058 Alpha/Beta hydrolase fold LLC55_06125 IPR000801 Putative esterase LLC55_06130 IPR006667 SLC41 divalent cation transporters, integral membrane domain LLC55_06130 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily LLC55_06130 IPR038048 Magnesium transporter MgtE, transmembrane domain LLC55_06130 IPR000644 CBS domain LLC55_06130 IPR038076 MgtE, N-terminal domain superfamily LLC55_06130 IPR006669 Magnesium transporter MgtE LLC55_06130 IPR006668 Magnesium transporter, MgtE intracellular domain LLC55_06135 IPR036637 Phosphohistidine domain superfamily LLC55_06135 IPR018274 PEP-utilising enzyme, active site LLC55_06135 IPR008279 PEP-utilising enzyme, mobile domain LLC55_06135 IPR023151 PEP-utilising enzyme, conserved site LLC55_06135 IPR040442 Pyruvate kinase-like domain superfamily LLC55_06135 IPR000121 PEP-utilising enzyme, C-terminal LLC55_06135 IPR036618 PtsI, HPr-binding domain superfamily LLC55_06135 IPR024692 Phosphotransferase system, enzyme I LLC55_06135 IPR008731 Phosphotransferase system, enzyme I N-terminal LLC55_06135 IPR006318 Phosphotransferase system, enzyme I-like LLC55_06135 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_06140 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site LLC55_06140 IPR035895 HPr-like superfamily LLC55_06140 IPR000032 Phosphocarrier protein HPr-like LLC55_06140 IPR002114 Phosphotransferase system, HPr serine phosphorylation site LLC55_06150 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06150 IPR005337 RapZ-like family LLC55_06155 IPR003755 HPr(Ser) kinase/phosphorylase LLC55_06155 IPR011104 HPr kinase/phosphorylase, C-terminal LLC55_06155 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily LLC55_06155 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal LLC55_06160 IPR016152 Phosphotransferase/anion transporter LLC55_06160 IPR002178 PTS EIIA type-2 domain LLC55_06160 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN LLC55_06165 IPR036567 Ribosome hibernation promotion factor-like LLC55_06165 IPR003489 Ribosome hibernation promoting factor/RaiA LLC55_06170 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily LLC55_06170 IPR000394 RNA polymerase sigma factor 54 LLC55_06170 IPR007046 RNA polymerase sigma factor 54, core-binding domain LLC55_06170 IPR007634 RNA polymerase sigma factor 54, DNA-binding LLC55_06175 IPR003593 AAA+ ATPase domain LLC55_06175 IPR003439 ABC transporter-like LLC55_06175 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06175 IPR030921 LPS export ABC transporter, ATP-binding protein LptB LLC55_06175 IPR017871 ABC transporter, conserved site LLC55_06180 IPR005653 Organic solvent tolerance-like, N-terminal LLC55_06180 IPR014340 Lipopolysaccharide export system protein LptA LLC55_06190 IPR036412 HAD-like superfamily LLC55_06190 IPR023214 HAD superfamily LLC55_06190 IPR010023 KdsC family LLC55_06195 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type LLC55_06195 IPR001347 Sugar isomerase (SIS) LLC55_06195 IPR035474 KpsF-like, SIS domain LLC55_06195 IPR000644 CBS domain LLC55_06200 IPR002634 BolA protein LLC55_06200 IPR036065 BolA-like superfamily LLC55_06205 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase LLC55_06205 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta LLC55_06205 IPR001986 Enolpyruvate transferase domain LLC55_06205 IPR036968 Enolpyruvate transferase domain superfamily LLC55_06230 IPR036477 Formyl transferase, N-terminal domain superfamily LLC55_06230 IPR002376 Formyl transferase, N-terminal LLC55_06230 IPR004607 Phosphoribosylglycinamide formyltransferase LLC55_06230 IPR001555 Phosphoribosylglycinamide formyltransferase, active site LLC55_06245 IPR036921 PurM-like, N-terminal domain superfamily LLC55_06245 IPR010918 PurM-like, C-terminal domain LLC55_06245 IPR036676 PurM-like, C-terminal domain superfamily LLC55_06245 IPR016188 PurM-like, N-terminal domain LLC55_06245 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase LLC55_06255 IPR002549 Transmembrane protein TqsA-like LLC55_06260 IPR017788 DnaA regulatory inactivator Hda LLC55_06260 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae LLC55_06260 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06260 IPR020591 Chromosomal replication control, initiator DnaA-like LLC55_06260 IPR013317 Chromosomal replication initiator protein DnaA LLC55_06265 IPR005835 Nucleotidyl transferase domain LLC55_06265 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_06270 IPR002575 Aminoglycoside phosphotransferase LLC55_06270 IPR011009 Protein kinase-like domain superfamily LLC55_06285 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria LLC55_06285 IPR002933 Peptidase M20 LLC55_06285 IPR011650 Peptidase M20, dimerisation domain LLC55_06285 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase LLC55_06285 IPR036264 Bacterial exopeptidase dimerisation domain LLC55_06285 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site LLC55_06290 IPR010994 RuvA domain 2-like LLC55_06290 IPR004509 Competence protein ComEA, helix-hairpin-helix domain LLC55_06320 IPR010720 Alpha-L-arabinofuranosidase, C-terminal LLC55_06320 IPR013780 Glycosyl hydrolase, all-beta LLC55_06320 IPR017853 Glycoside hydrolase superfamily LLC55_06325 IPR015443 Aldose 1-epimerase LLC55_06325 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase LLC55_06325 IPR011013 Galactose mutarotase-like domain superfamily LLC55_06325 IPR014718 Glycoside hydrolase-type carbohydrate-binding LLC55_06325 IPR018052 Aldose 1-epimerase, conserved site LLC55_06330 IPR002541 Cytochrome c assembly protein LLC55_06330 IPR017562 Cytochrome c-type biogenesis protein CcsA LLC55_06340 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily LLC55_06340 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain LLC55_06340 IPR022941 Signal recognition particle, SRP54 subunit LLC55_06340 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily LLC55_06340 IPR004125 Signal recognition particle, SRP54 subunit, M-domain LLC55_06340 IPR013822 Signal recognition particle SRP54, helical bundle LLC55_06340 IPR003593 AAA+ ATPase domain LLC55_06340 IPR004780 Signal recognition particle protein LLC55_06340 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06350 IPR013785 Aldolase-type TIM barrel LLC55_06350 IPR004136 Nitronate monooxygenase LLC55_06360 IPR000307 Ribosomal protein S16 LLC55_06360 IPR020592 Ribosomal protein S16, conserved site LLC55_06360 IPR023803 Ribosomal protein S16 domain superfamily LLC55_06365 IPR027275 PRC-barrel domain LLC55_06365 IPR011961 16S rRNA processing protein RimM LLC55_06365 IPR002676 RimM, N-terminal LLC55_06365 IPR036976 RimM, N-terminal domain superfamily LLC55_06365 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_06365 IPR011033 PRC-barrel-like superfamily LLC55_06370 IPR029028 Alpha/beta knot methyltransferases LLC55_06370 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria LLC55_06370 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal LLC55_06370 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_06370 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain LLC55_06375 IPR008991 Translation protein SH3-like domain superfamily LLC55_06375 IPR018257 Ribosomal protein L19, conserved site LLC55_06375 IPR038657 Ribosomal protein L19 superfamily LLC55_06375 IPR001857 Ribosomal protein L19 LLC55_06385 IPR002528 Multi antimicrobial extrusion protein LLC55_06390 IPR025708 Heat shock protein 15 LLC55_06390 IPR002942 RNA-binding S4 domain LLC55_06390 IPR036986 RNA-binding S4 domain superfamily LLC55_06415 IPR000305 GIY-YIG endonuclease LLC55_06415 IPR035901 GIY-YIG endonuclease superfamily LLC55_06420 IPR003593 AAA+ ATPase domain LLC55_06420 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06420 IPR041546 ClpA/ClpB, AAA lid domain LLC55_06420 IPR018368 ClpA/B, conserved site 1 LLC55_06420 IPR001270 ClpA/B family LLC55_06420 IPR028299 ClpA/B, conserved site 2 LLC55_06420 IPR036628 Clp, N-terminal domain superfamily LLC55_06420 IPR019489 Clp ATPase, C-terminal LLC55_06420 IPR017730 Chaperonin ClpB LLC55_06420 IPR003959 ATPase, AAA-type, core LLC55_06420 IPR004176 Clp, N-terminal LLC55_06455 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_06455 IPR010101 TonB-dependent vitamin B12 transporter BtuB LLC55_06455 IPR039426 Vitamin B12 transporter BtuB-like LLC55_06455 IPR012910 TonB-dependent receptor, plug domain LLC55_06455 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_06455 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_06480 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain LLC55_06480 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06480 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR LLC55_06495 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase LLC55_06495 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06500 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like LLC55_06500 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal LLC55_06500 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic LLC55_06500 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily LLC55_06510 IPR003805 Adenosylcobinamide-GDP ribazoletransferase LLC55_06520 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal LLC55_06520 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal LLC55_06520 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal LLC55_06520 IPR022272 Lipocalin family conserved site LLC55_06520 IPR000183 Ornithine/DAP/Arg decarboxylase LLC55_06520 IPR002433 Ornithine decarboxylase LLC55_06520 IPR029066 PLP-binding barrel LLC55_06525 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like LLC55_06525 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal LLC55_06525 IPR022770 Ferric iron reductase FhuF domain LLC55_06530 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG LLC55_06530 IPR023692 Multidrug resistance protein MdtG LLC55_06530 IPR020846 Major facilitator superfamily domain LLC55_06530 IPR011701 Major facilitator superfamily LLC55_06530 IPR036259 MFS transporter superfamily LLC55_06535 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal LLC55_06535 IPR022770 Ferric iron reductase FhuF domain LLC55_06535 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like LLC55_06545 IPR010105 TonB-dependent siderophore receptor LLC55_06545 IPR012910 TonB-dependent receptor, plug domain LLC55_06545 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_06545 IPR011662 Secretin/TonB, short N-terminal domain LLC55_06545 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_06545 IPR010916 TonB box, conserved site LLC55_06545 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_06545 IPR010917 TonB-dependent receptor, conserved site LLC55_06560 IPR003148 Regulator of K+ conductance, N-terminal LLC55_06560 IPR036291 NAD(P)-binding domain superfamily LLC55_06560 IPR004771 K+/H+ exchanger LLC55_06560 IPR006153 Cation/H+ exchanger LLC55_06560 IPR038770 Sodium/solute symporter superfamily LLC55_06570 IPR010917 TonB-dependent receptor, conserved site LLC55_06570 IPR039426 Vitamin B12 transporter BtuB-like LLC55_06570 IPR012910 TonB-dependent receptor, plug domain LLC55_06570 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_06570 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_06570 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_06570 IPR010105 TonB-dependent siderophore receptor LLC55_06575 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_06575 IPR010101 TonB-dependent vitamin B12 transporter BtuB LLC55_06575 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_06575 IPR012910 TonB-dependent receptor, plug domain LLC55_06575 IPR010916 TonB box, conserved site LLC55_06575 IPR039426 Vitamin B12 transporter BtuB-like LLC55_06575 IPR010917 TonB-dependent receptor, conserved site LLC55_06575 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_06590 IPR012910 TonB-dependent receptor, plug domain LLC55_06590 IPR039426 Vitamin B12 transporter BtuB-like LLC55_06590 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_06590 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_06590 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_06590 IPR010105 TonB-dependent siderophore receptor LLC55_06590 IPR010917 TonB-dependent receptor, conserved site LLC55_06595 IPR003439 ABC transporter-like LLC55_06595 IPR003593 AAA+ ATPase domain LLC55_06595 IPR032781 ABC-transporter extension domain LLC55_06595 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06595 IPR017871 ABC transporter, conserved site LLC55_06610 IPR036390 Winged helix DNA-binding domain superfamily LLC55_06610 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_06610 IPR000847 Transcription regulator HTH, LysR LLC55_06610 IPR005119 LysR, substrate-binding LLC55_06610 IPR037420 HTH-type transcriptional activator AmpR, PBP2 LLC55_06620 IPR013094 Alpha/beta hydrolase fold-3 LLC55_06620 IPR029058 Alpha/Beta hydrolase fold LLC55_06620 IPR036514 SGNH hydrolase superfamily LLC55_06620 IPR013830 SGNH hydrolase-type esterase domain LLC55_06650 IPR018060 DNA binding HTH domain, AraC-type LLC55_06650 IPR018062 HTH domain AraC-type, conserved site LLC55_06655 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_06655 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_06655 IPR001404 Heat shock protein Hsp90 family LLC55_06655 IPR020575 Heat shock protein Hsp90, N-terminal LLC55_06655 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_06655 IPR037196 HSP90, C-terminal domain LLC55_06680 IPR001207 Transposase, mutator type LLC55_06685 IPR027303 Glutamine synthetase, glycine-rich site LLC55_06685 IPR008146 Glutamine synthetase, catalytic domain LLC55_06685 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LLC55_06685 IPR036651 Glutamine synthetase, N-terminal domain superfamily LLC55_06690 IPR029062 Class I glutamine amidotransferase-like LLC55_06690 IPR005697 Homoserine O-succinyltransferase MetA LLC55_06690 IPR033752 MetA family LLC55_06695 IPR001123 Amino acid exporter protein, LeuE-type LLC55_06700 IPR029062 Class I glutamine amidotransferase-like LLC55_06700 IPR017926 Glutamine amidotransferase LLC55_06700 IPR011697 Peptidase C26 LLC55_06710 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_06710 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_06710 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_06710 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme LLC55_06710 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase LLC55_06715 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_06715 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase LLC55_06715 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_06715 IPR000192 Aminotransferase class V domain LLC55_06715 IPR012703 2-aminoethylphosphonate--pyruvate transaminase LLC55_06715 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_06750 IPR017941 Rieske [2Fe-2S] iron-sulphur domain LLC55_06750 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily LLC55_06760 IPR000192 Aminotransferase class V domain LLC55_06760 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LLC55_06760 IPR010970 Cysteine desulfurase, SufS LLC55_06760 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_06760 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_06760 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_06760 IPR016454 Cysteine desulfurase LLC55_06765 IPR000825 SUF system FeS cluster assembly, SufBD LLC55_06765 IPR011542 SUF system FeS cluster assembly, SufD LLC55_06765 IPR037284 SUF system FeS cluster assembly, SufBD superfamily LLC55_06770 IPR017871 ABC transporter, conserved site LLC55_06770 IPR003439 ABC transporter-like LLC55_06770 IPR003593 AAA+ ATPase domain LLC55_06770 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06770 IPR010230 FeS cluster assembly SUF system, ATPase SufC LLC55_06775 IPR010231 SUF system FeS cluster assembly, SufB LLC55_06775 IPR000825 SUF system FeS cluster assembly, SufBD LLC55_06775 IPR037284 SUF system FeS cluster assembly, SufBD superfamily LLC55_06780 IPR030489 Transcription regulator Rrf2-type, conserved site LLC55_06780 IPR000944 Transcription regulator Rrf2-type LLC55_06780 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_06780 IPR036390 Winged helix DNA-binding domain superfamily LLC55_06835 IPR000304 Pyrroline-5-carboxylate reductase LLC55_06835 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain LLC55_06835 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal LLC55_06835 IPR036291 NAD(P)-binding domain superfamily LLC55_06835 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_06840 IPR001608 Alanine racemase, N-terminal LLC55_06840 IPR029066 PLP-binding barrel LLC55_06840 IPR011078 Pyridoxal phosphate homeostasis protein LLC55_06845 IPR001482 Type II/IV secretion system protein LLC55_06845 IPR006321 Pilus retraction protein PilT LLC55_06845 IPR003593 AAA+ ATPase domain LLC55_06845 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06850 IPR001482 Type II/IV secretion system protein LLC55_06850 IPR006321 Pilus retraction protein PilT LLC55_06850 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_06870 IPR025777 GMP synthetase ATP pyrophosphatase domain LLC55_06870 IPR017926 Glutamine amidotransferase LLC55_06870 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_06870 IPR000182 GNAT domain LLC55_06870 IPR016181 Acyl-CoA N-acyltransferase LLC55_06870 IPR005019 Methyladenine glycosylase LLC55_06870 IPR029062 Class I glutamine amidotransferase-like LLC55_06870 IPR011257 DNA glycosylase LLC55_06870 IPR001674 GMP synthase, C-terminal LLC55_06880 IPR003774 Protein of unknown function UPF0301 LLC55_06885 IPR006641 YqgF/RNase H-like domain LLC55_06885 IPR005227 Putative pre-16S rRNA nuclease LLC55_06885 IPR012337 Ribonuclease H-like superfamily LLC55_06885 IPR037027 YqgF/RNase H-like domain superfamily LLC55_06890 IPR006130 Aspartate/ornithine carbamoyltransferase LLC55_06890 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily LLC55_06890 IPR002082 Aspartate carbamoyltransferase LLC55_06890 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain LLC55_06890 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding LLC55_06900 IPR015946 K homology domain-like, alpha/beta LLC55_06900 IPR003718 OsmC/Ohr family LLC55_06900 IPR036102 OsmC/Ohr superfamily LLC55_06900 IPR019904 Peroxiredoxin OsmC LLC55_06910 IPR003719 Phenazine biosynthesis PhzF protein LLC55_06920 IPR001048 Aspartate/glutamate/uridylate kinase LLC55_06920 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain LLC55_06920 IPR002912 ACT domain LLC55_06920 IPR005260 Aspartate kinase, monofunctional class LLC55_06920 IPR036393 Acetylglutamate kinase-like superfamily LLC55_06920 IPR001341 Aspartate kinase LLC55_06920 IPR018042 Aspartate kinase, conserved site LLC55_06935 IPR036565 Mur-like, catalytic domain superfamily LLC55_06935 IPR036615 Mur ligase, C-terminal domain superfamily LLC55_06935 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase LLC55_06935 IPR013221 Mur ligase, central LLC55_06935 IPR018109 Folylpolyglutamate synthetase, conserved site LLC55_06945 IPR000092 Polyprenyl synthetase LLC55_06945 IPR033749 Polyprenyl synthetase, conserved site LLC55_06945 IPR008949 Isoprenoid synthase domain superfamily LLC55_06950 IPR012340 Nucleic acid-binding, OB-fold LLC55_06950 IPR000424 Primosome PriB/single-strand DNA-binding LLC55_06950 IPR011344 Single-stranded DNA-binding protein LLC55_06955 IPR029787 Nucleotide cyclase LLC55_06955 IPR013515 Phytochrome, central region LLC55_06955 IPR016132 Phytochrome chromophore attachment domain LLC55_06955 IPR001294 Phytochrome LLC55_06955 IPR000160 GGDEF domain LLC55_06955 IPR003018 GAF domain LLC55_06955 IPR035919 EAL domain superfamily LLC55_06955 IPR001633 EAL domain LLC55_06955 IPR029016 GAF-like domain superfamily LLC55_06990 IPR007423 Selenoprotein, putative LLC55_06995 IPR025299 CstA, C-terminal domain LLC55_06995 IPR003706 CstA, N-terminal domain LLC55_07000 IPR011051 RmlC-like cupin domain superfamily LLC55_07000 IPR012093 Pirin LLC55_07000 IPR008778 Pirin, C-terminal domain LLC55_07000 IPR003829 Pirin, N-terminal domain LLC55_07000 IPR014710 RmlC-like jelly roll fold LLC55_07010 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_07010 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_07010 IPR010609 Gp5, C-terminal LLC55_07010 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_07010 IPR006531 Gp5 N-terminal LLC55_07030 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_07030 IPR006531 Gp5 N-terminal LLC55_07030 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_07030 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_07030 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_07030 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_07035 IPR008490 Transposase InsH, N-terminal LLC55_07035 IPR002559 Transposase, IS4-like LLC55_07065 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_07065 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_07065 IPR006531 Gp5 N-terminal LLC55_07065 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_07065 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_07065 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_07080 IPR008490 Transposase InsH, N-terminal LLC55_07080 IPR002559 Transposase, IS4-like LLC55_07130 IPR008778 Pirin, C-terminal domain LLC55_07130 IPR011051 RmlC-like cupin domain superfamily LLC55_07130 IPR012093 Pirin LLC55_07130 IPR003829 Pirin, N-terminal domain LLC55_07130 IPR014710 RmlC-like jelly roll fold LLC55_07135 IPR007581 Endonuclease V LLC55_07140 IPR013078 Histidine phosphatase superfamily, clade-1 LLC55_07140 IPR029033 Histidine phosphatase superfamily LLC55_07140 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site LLC55_07140 IPR005952 Phosphoglycerate mutase 1 LLC55_07155 IPR024079 Metallopeptidase, catalytic domain superfamily LLC55_07155 IPR000718 Peptidase M13 LLC55_07155 IPR018497 Peptidase M13, C-terminal domain LLC55_07155 IPR042089 Peptidase M13, domain 2 LLC55_07155 IPR008753 Peptidase M13, N-terminal domain LLC55_07165 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase LLC55_07165 IPR001789 Signal transduction response regulator, receiver domain LLC55_07165 IPR011006 CheY-like superfamily LLC55_07165 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type LLC55_07165 IPR035909 Methylesterase CheB, C-terminal LLC55_07170 IPR026024 Chemotaxis protein methyltransferase CheR LLC55_07170 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal LLC55_07170 IPR000780 MCP methyltransferase, CheR-type LLC55_07170 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal LLC55_07170 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily LLC55_07170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_07175 IPR012226 Diguanylate cyclase/phosphodiesterase LLC55_07175 IPR001633 EAL domain LLC55_07175 IPR035919 EAL domain superfamily LLC55_07175 IPR000160 GGDEF domain LLC55_07175 IPR000014 PAS domain LLC55_07175 IPR029787 Nucleotide cyclase LLC55_07175 IPR001610 PAC motif LLC55_07175 IPR000700 PAS-associated, C-terminal LLC55_07175 IPR035965 PAS domain superfamily LLC55_07180 IPR039315 Chemotaxis protein CheW LLC55_07180 IPR036061 CheW-like domain superfamily LLC55_07180 IPR002545 CheW-like domain LLC55_07185 IPR004090 Chemotaxis methyl-accepting receptor LLC55_07185 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_07185 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_07185 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_07185 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_07185 IPR003660 HAMP domain LLC55_07190 IPR005467 Histidine kinase domain LLC55_07190 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_07190 IPR035891 CheY-binding domain of CheA LLC55_07190 IPR036641 HPT domain superfamily LLC55_07190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_07190 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_07190 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_07190 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_07190 IPR036061 CheW-like domain superfamily LLC55_07190 IPR002545 CheW-like domain LLC55_07190 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily LLC55_07190 IPR004105 Histidine kinase CheA-like, homodimeric domain LLC55_07190 IPR015162 CheY binding LLC55_07205 IPR041471 UvrB, interaction domain LLC55_07205 IPR001650 Helicase, C-terminal LLC55_07205 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07205 IPR037235 TRCF-like, C-terminal domain LLC55_07205 IPR005118 Transcription-repair-coupling factor, C-terminal domain LLC55_07205 IPR036101 CarD-like/TRCF domain superfamily LLC55_07205 IPR003711 CarD-like/TRCF domain LLC55_07205 IPR011545 DEAD/DEAH box helicase domain LLC55_07205 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_07205 IPR004576 Transcription-repair coupling factor LLC55_07215 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_07215 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_07215 IPR007473 Ribosomal RNA large subunit methyltransferase J LLC55_07295 IPR001584 Integrase, catalytic core LLC55_07295 IPR009057 Homeobox-like domain superfamily LLC55_07295 IPR036397 Ribonuclease H superfamily LLC55_07295 IPR012337 Ribonuclease H-like superfamily LLC55_07295 IPR001598 Transposase, IS30, conserved site LLC55_07310 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_07310 IPR033910 Glutamyl-tRNA synthetase LLC55_07310 IPR000924 Glutamyl/glutaminyl-tRNA synthetase LLC55_07310 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain LLC55_07310 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding LLC55_07310 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_07310 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 LLC55_07310 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial LLC55_07315 IPR002481 Ferric-uptake regulator LLC55_07315 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_07315 IPR036390 Winged helix DNA-binding domain superfamily LLC55_07360 IPR012340 Nucleic acid-binding, OB-fold LLC55_07360 IPR002059 Cold-shock protein, DNA-binding LLC55_07360 IPR011129 Cold shock domain LLC55_07360 IPR012156 Cold shock, CspA LLC55_07360 IPR019844 Cold-shock (CSD) domain LLC55_07375 IPR000594 THIF-type NAD/FAD binding fold LLC55_07375 IPR035985 Ubiquitin-activating enzyme LLC55_07380 IPR018228 Deoxyribonuclease, TatD-related, conserved site LLC55_07380 IPR032466 Metal-dependent hydrolase LLC55_07380 IPR001130 TatD family LLC55_07395 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LLC55_07395 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LLC55_07395 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LLC55_07395 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LLC55_07395 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LLC55_07395 IPR006089 Acyl-CoA dehydrogenase, conserved site LLC55_07395 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LLC55_07405 IPR010987 Glutathione S-transferase, C-terminal-like LLC55_07405 IPR036282 Glutathione S-transferase, C-terminal domain superfamily LLC55_07405 IPR040079 Glutathione Transferase family LLC55_07405 IPR004045 Glutathione S-transferase, N-terminal LLC55_07405 IPR005955 Glutathione S-transferases, class Zeta LLC55_07405 IPR034330 Glutathione S-transferases, class Zeta , C-terminal LLC55_07405 IPR034333 Glutathione S-transferases, class Zeta , N-terminal LLC55_07405 IPR036249 Thioredoxin-like superfamily LLC55_07410 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_07410 IPR017932 Glutamine amidotransferase type 2 domain LLC55_07410 IPR033738 Asparagine synthase, N-terminal domain LLC55_07410 IPR006426 Asparagine synthase, glutamine-hydrolyzing LLC55_07410 IPR001962 Asparagine synthase LLC55_07415 IPR029039 Flavoprotein-like superfamily LLC55_07415 IPR005025 NADPH-dependent FMN reductase-like LLC55_07420 IPR003593 AAA+ ATPase domain LLC55_07420 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily LLC55_07420 IPR007692 DNA helicase, DnaB type LLC55_07420 IPR007694 DNA helicase, DnaB-like, C-terminal LLC55_07420 IPR007693 DNA helicase, DnaB-like, N-terminal LLC55_07420 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LLC55_07420 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07425 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily LLC55_07425 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_07425 IPR006050 DNA photolyase, N-terminal LLC55_07425 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal LLC55_07425 IPR002081 Cryptochrome/DNA photolyase class 1 LLC55_07425 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain LLC55_07425 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily LLC55_07435 IPR008722 Outer membrane porin F, N-terminal LLC55_07435 IPR036737 OmpA-like domain superfamily LLC55_07435 IPR006690 Outer membrane protein, OmpA-like, conserved site LLC55_07435 IPR006665 OmpA-like domain LLC55_07435 IPR006664 Outer membrane protein, bacterial LLC55_07435 IPR028974 TSP type-3 repeat LLC55_07435 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel LLC55_07470 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_07470 IPR013154 Alcohol dehydrogenase, N-terminal LLC55_07470 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LLC55_07470 IPR011032 GroES-like superfamily LLC55_07470 IPR036291 NAD(P)-binding domain superfamily LLC55_07470 IPR020843 Polyketide synthase, enoylreductase domain LLC55_07475 IPR001807 Chloride channel, voltage gated LLC55_07475 IPR014743 Chloride channel, core LLC55_07475 IPR023861 Chloride channel, ClcA LLC55_07490 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily LLC55_07490 IPR023546 Methylated-DNA--protein-cysteine methyltransferase LLC55_07490 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain LLC55_07490 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain LLC55_07490 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding LLC55_07490 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site LLC55_07490 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_07495 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal LLC55_07495 IPR035451 Ada-like domain superfamily LLC55_07495 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal LLC55_07495 IPR018062 HTH domain AraC-type, conserved site LLC55_07495 IPR018060 DNA binding HTH domain, AraC-type LLC55_07495 IPR009057 Homeobox-like domain superfamily LLC55_07495 IPR003265 HhH-GPD domain LLC55_07495 IPR011257 DNA glycosylase LLC55_07495 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily LLC55_07495 IPR004026 Ada DNA repair, metal-binding LLC55_07540 IPR014014 RNA helicase, DEAD-box type, Q motif LLC55_07540 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LLC55_07540 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07540 IPR034415 CsdA, RNA recognition motif LLC55_07540 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_07540 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain LLC55_07540 IPR011545 DEAD/DEAH box helicase domain LLC55_07540 IPR001650 Helicase, C-terminal LLC55_07540 IPR028618 ATP-dependent RNA helicase DeaD LLC55_07540 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily LLC55_07545 IPR001633 EAL domain LLC55_07545 IPR035919 EAL domain superfamily LLC55_07545 IPR000160 GGDEF domain LLC55_07545 IPR029787 Nucleotide cyclase LLC55_07545 IPR000014 PAS domain LLC55_07545 IPR035965 PAS domain superfamily LLC55_07545 IPR013656 PAS fold-4 LLC55_07550 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_07550 IPR036986 RNA-binding S4 domain superfamily LLC55_07550 IPR002942 RNA-binding S4 domain LLC55_07550 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LLC55_07550 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LLC55_07550 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_07550 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LLC55_07570 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily LLC55_07570 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein LLC55_07570 IPR010203 Regulator of ribonuclease activity A LLC55_07575 IPR012338 Beta-lactamase/transpeptidase-like LLC55_07575 IPR001466 Beta-lactamase-related LLC55_07580 IPR038770 Sodium/solute symporter superfamily LLC55_07580 IPR006153 Cation/H+ exchanger LLC55_07585 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_07585 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_07585 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_07585 IPR005467 Histidine kinase domain LLC55_07585 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_07585 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_07585 IPR003660 HAMP domain LLC55_07590 IPR011006 CheY-like superfamily LLC55_07590 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_07590 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_07590 IPR001789 Signal transduction response regulator, receiver domain LLC55_07590 IPR039420 Transcriptional regulatory protein WalR-like LLC55_07595 IPR010131 RND efflux system, outer membrane lipoprotein, NodT LLC55_07595 IPR003423 Outer membrane efflux protein LLC55_07610 IPR001036 Acriflavin resistance protein LLC55_07610 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LLC55_07620 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07620 IPR039421 Type I protein exporter LLC55_07620 IPR017871 ABC transporter, conserved site LLC55_07620 IPR011527 ABC transporter type 1, transmembrane domain LLC55_07620 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_07620 IPR003439 ABC transporter-like LLC55_07620 IPR003593 AAA+ ATPase domain LLC55_07650 IPR002559 Transposase, IS4-like LLC55_07650 IPR008490 Transposase InsH, N-terminal LLC55_07675 IPR008490 Transposase InsH, N-terminal LLC55_07675 IPR002559 Transposase, IS4-like LLC55_07680 IPR002559 Transposase, IS4-like LLC55_07680 IPR008490 Transposase InsH, N-terminal LLC55_07695 IPR001598 Transposase, IS30, conserved site LLC55_07695 IPR036397 Ribonuclease H superfamily LLC55_07695 IPR012337 Ribonuclease H-like superfamily LLC55_07695 IPR009057 Homeobox-like domain superfamily LLC55_07695 IPR001584 Integrase, catalytic core LLC55_07710 IPR001977 Dephospho-CoA kinase LLC55_07710 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07715 IPR010627 Peptidase A24A, N-terminal LLC55_07715 IPR014032 Peptidase A24A, prepilin type IV, bacterial LLC55_07715 IPR000045 Prepilin type IV endopeptidase, peptidase domain LLC55_07720 IPR003004 GspF/PilC family LLC55_07720 IPR001992 Type II secretion system conserved site LLC55_07720 IPR018076 Type II secretion system F domain LLC55_07720 IPR042094 Type II secretion system F domain superfamily LLC55_07725 IPR012902 Prokaryotic N-terminal methylation site LLC55_07725 IPR001082 Fimbrial protein pilin LLC55_07730 IPR017850 Alkaline-phosphatase-like, core domain superfamily LLC55_07730 IPR012549 Phosphoethanolamine transferase, N-terminal LLC55_07730 IPR040423 Phosphoethanolamine transferase LLC55_07730 IPR000917 Sulfatase, N-terminal LLC55_07740 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_07740 IPR030374 Polyamine biosynthesis domain LLC55_07740 IPR030373 Polyamine biosynthesis domain, conserved site LLC55_07740 IPR001045 Spermidine/spermine synthases LLC55_07745 IPR007831 General secretory system II, protein E, N-terminal LLC55_07745 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07745 IPR037257 General secretory system II, protein E, N-terminal superfamily LLC55_07745 IPR013374 ATPase, type IV, pilus assembly, PilB LLC55_07745 IPR042181 Type II secretion system, protein E, N-terminal LLC55_07745 IPR001482 Type II/IV secretion system protein LLC55_07750 IPR040548 BepA, intracellular delivery domain LLC55_07750 IPR003812 Fido domain LLC55_07750 IPR036597 Fido-like domain superfamily LLC55_07765 IPR002197 DNA binding HTH domain, Fis-type LLC55_07765 IPR003593 AAA+ ATPase domain LLC55_07765 IPR009057 Homeobox-like domain superfamily LLC55_07765 IPR025944 Sigma-54 interaction domain, conserved site LLC55_07765 IPR001789 Signal transduction response regulator, receiver domain LLC55_07765 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07765 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LLC55_07765 IPR011006 CheY-like superfamily LLC55_07765 IPR002078 RNA polymerase sigma factor 54 interaction domain LLC55_07765 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LLC55_07770 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_07770 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_07770 IPR005467 Histidine kinase domain LLC55_07770 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_07770 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_07770 IPR000014 PAS domain LLC55_07770 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_07775 IPR016102 Succinyl-CoA synthetase-like LLC55_07775 IPR005809 Succinate--CoA synthetase, beta subunit LLC55_07775 IPR005811 ATP-citrate lyase/succinyl-CoA ligase LLC55_07775 IPR013815 ATP-grasp fold, subdomain 1 LLC55_07775 IPR011761 ATP-grasp fold LLC55_07775 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site LLC55_07775 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type LLC55_07780 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site LLC55_07780 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site LLC55_07780 IPR003781 CoA-binding LLC55_07780 IPR005810 Succinyl-CoA ligase, alpha subunit LLC55_07780 IPR005811 ATP-citrate lyase/succinyl-CoA ligase LLC55_07780 IPR036291 NAD(P)-binding domain superfamily LLC55_07780 IPR016102 Succinyl-CoA synthetase-like LLC55_07795 IPR000132 Nitrilase/cyanide hydratase, conserved site LLC55_07795 IPR036526 Carbon-nitrogen hydrolase superfamily LLC55_07795 IPR003010 Carbon-nitrogen hydrolase LLC55_07795 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_07795 IPR003694 NAD(+) synthetase LLC55_07795 IPR014445 Glutamine-dependent NAD(+) synthetase LLC55_07795 IPR022310 NAD/GMP synthase LLC55_07800 IPR017689 Outer membrane protein assembly factor BamD LLC55_07800 IPR039565 Outer membrane lipoprotein BamD-like LLC55_07800 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_07805 IPR002942 RNA-binding S4 domain LLC55_07805 IPR036986 RNA-binding S4 domain superfamily LLC55_07805 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_07805 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_07805 IPR006225 Pseudouridine synthase, RluC/RluD LLC55_07805 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site LLC55_07810 IPR011324 Cytotoxic necrotizing factor-like, catalytic LLC55_07810 IPR003730 Multi-copper polyphenol oxidoreductase LLC55_07810 IPR038371 Multi-copper polyphenol oxidoreductase superfamily LLC55_07825 IPR001830 Glycosyl transferase, family 20 LLC55_07825 IPR012766 Alpha,alpha-trehalose-phosphate synthase LLC55_07830 IPR012341 Six-hairpin glycosidase-like superfamily LLC55_07830 IPR011613 GH15-like domain LLC55_07830 IPR008928 Six-hairpin glycosidase superfamily LLC55_07835 IPR036412 HAD-like superfamily LLC55_07835 IPR006379 HAD-superfamily hydrolase, subfamily IIB LLC55_07835 IPR003337 Trehalose-phosphatase LLC55_07835 IPR023214 HAD superfamily LLC55_07845 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_07845 IPR010917 TonB-dependent receptor, conserved site LLC55_07845 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_07845 IPR010916 TonB box, conserved site LLC55_07845 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_07845 IPR010101 TonB-dependent vitamin B12 transporter BtuB LLC55_07845 IPR012910 TonB-dependent receptor, plug domain LLC55_07845 IPR039426 Vitamin B12 transporter BtuB-like LLC55_07875 IPR007471 N-end aminoacyl transferase, N-terminal LLC55_07875 IPR016181 Acyl-CoA N-acyltransferase LLC55_07875 IPR007472 N-end rule aminoacyl transferase, C-terminal LLC55_07875 IPR017138 Aspartate/glutamate leucyltransferase LLC55_07875 IPR030700 N-end rule aminoacyl transferase LLC55_07905 IPR003703 Acyl-CoA thioesterase LLC55_07905 IPR029069 HotDog domain superfamily LLC55_07910 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_07910 IPR029045 ClpP/crotonase-like domain superfamily LLC55_07920 IPR029069 HotDog domain superfamily LLC55_07920 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family LLC55_07925 IPR004602 UvrABC system subunit A LLC55_07925 IPR041552 UvrA DNA-binding domain LLC55_07925 IPR041102 UvrA, interaction domain LLC55_07925 IPR003439 ABC transporter-like LLC55_07925 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07925 IPR017871 ABC transporter, conserved site LLC55_07930 IPR001787 Ribosomal protein L21 LLC55_07930 IPR028909 Ribosomal protein L21-like LLC55_07930 IPR036164 L21-like superfamily LLC55_07930 IPR018258 Ribosomal protein L21, conserved site LLC55_07935 IPR001684 Ribosomal protein L27 LLC55_07935 IPR018261 Ribosomal protein L27, conserved site LLC55_07940 IPR035101 GTP-binding protein, Obg-type LLC55_07940 IPR014100 GTP-binding protein Obg/CgtA LLC55_07940 IPR006074 GTP1/OBG, conserved site LLC55_07940 IPR006169 GTP1/OBG domain LLC55_07940 IPR006073 GTP binding domain LLC55_07940 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_07940 IPR031167 OBG-type guanine nucleotide-binding (G) domain LLC55_07940 IPR036726 GTP1/OBG domain superfamily LLC55_07945 IPR002583 Ribosomal protein S20 LLC55_07945 IPR036510 Ribosomal protein S20 superfamily LLC55_07950 IPR004268 Peptidoglycan biosynthesis protein MurJ LLC55_07955 IPR015864 FAD synthetase LLC55_07955 IPR023468 Riboflavin kinase LLC55_07955 IPR002606 Riboflavin kinase, bacterial LLC55_07955 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic LLC55_07955 IPR023465 Riboflavin kinase domain superfamily LLC55_07955 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_07960 IPR010663 Zinc finger, FPG/IleRS-type LLC55_07960 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain LLC55_07960 IPR002300 Aminoacyl-tRNA synthetase, class Ia LLC55_07960 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LLC55_07960 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_07960 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LLC55_07960 IPR023585 Isoleucine-tRNA ligase, type 1 LLC55_07960 IPR002301 Isoleucine-tRNA ligase LLC55_07960 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_07960 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain LLC55_07965 IPR001872 Peptidase A8, signal peptidase II LLC55_07970 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase LLC55_07980 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily LLC55_07980 IPR006333 Cytochrome o ubiquinol oxidase subunit II LLC55_07980 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain LLC55_07980 IPR008972 Cupredoxin LLC55_07980 IPR002429 Cytochrome c oxidase subunit II-like C-terminal LLC55_07980 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain LLC55_07980 IPR010514 COX aromatic rich motif LLC55_07985 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site LLC55_07985 IPR023616 Cytochrome c oxidase-like, subunit I domain LLC55_07985 IPR036927 Cytochrome c oxidase-like, subunit I superfamily LLC55_07985 IPR000883 Cytochrome c oxidase subunit I LLC55_07985 IPR014207 Cytochrome o ubiquinol oxidase, subunit I LLC55_07990 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle LLC55_07990 IPR024791 Cytochrome c oxidase subunit III LLC55_07990 IPR033946 Ubiquinol oxidase subunit III domain LLC55_07990 IPR000298 Cytochrome c oxidase subunit III-like LLC55_07990 IPR014206 Cytochrome o ubiquinol oxidase, subunit III LLC55_07990 IPR035973 Cytochrome c oxidase subunit III-like superfamily LLC55_07995 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes LLC55_07995 IPR014210 Cytochrome o ubiquinol oxidase subunit IV LLC55_08005 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_08005 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_08005 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_08005 IPR010609 Gp5, C-terminal LLC55_08005 IPR006531 Gp5 N-terminal LLC55_08015 IPR006530 YD repeat LLC55_08015 IPR025479 Domain of unknown function DUF4329 LLC55_08015 IPR001826 RHS protein LLC55_08015 IPR022385 Rhs repeat-associated core LLC55_08015 IPR031325 RHS repeat LLC55_08045 IPR005748 DNA mismatch repair protein MutS LLC55_08045 IPR036678 MutS, connector domain superfamily LLC55_08045 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08045 IPR007860 DNA mismatch repair protein MutS, connector domain LLC55_08045 IPR036187 DNA mismatch repair protein MutS, core domain superfamily LLC55_08045 IPR016151 DNA mismatch repair protein MutS, N-terminal LLC55_08045 IPR007695 DNA mismatch repair protein MutS-like, N-terminal LLC55_08045 IPR017261 DNA mismatch repair protein MutS/MSH LLC55_08045 IPR000432 DNA mismatch repair protein MutS, C-terminal LLC55_08045 IPR007861 DNA mismatch repair protein MutS, clamp LLC55_08045 IPR007696 DNA mismatch repair protein MutS, core LLC55_08060 IPR041166 LapB, rubredoxin metal binding domain LLC55_08060 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_08060 IPR003593 AAA+ ATPase domain LLC55_08060 IPR004504 DNA repair protein RadA LLC55_08060 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain LLC55_08060 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_08060 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08095 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LLC55_08095 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_08095 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LLC55_08095 IPR012340 Nucleic acid-binding, OB-fold LLC55_08095 IPR029351 GAD domain LLC55_08095 IPR004115 GAD-like domain superfamily LLC55_08095 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb LLC55_08095 IPR004524 Aspartate-tRNA ligase, type 1 LLC55_08110 IPR002876 Transcriptional regulator TACO1-like LLC55_08110 IPR026564 Transcriptional regulator TACO1-like, domain 3 LLC55_08110 IPR029072 YebC-like LLC55_08110 IPR017856 Integrase-like, N-terminal LLC55_08115 IPR012337 Ribonuclease H-like superfamily LLC55_08115 IPR002176 Crossover junction endodeoxyribonuclease RuvC LLC55_08115 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site LLC55_08115 IPR036397 Ribonuclease H superfamily LLC55_08120 IPR000085 Bacterial DNA recombination protein RuvA LLC55_08120 IPR012340 Nucleic acid-binding, OB-fold LLC55_08120 IPR036267 RuvA, C-terminal domain superfamily LLC55_08120 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 LLC55_08120 IPR011114 Holliday junction DNA helicase RuvA, C-terminal LLC55_08120 IPR010994 RuvA domain 2-like LLC55_08120 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial LLC55_08125 IPR023051 Potassium uptake protein, low affinity, Kup LLC55_08125 IPR003855 Potassium transporter LLC55_08130 IPR003593 AAA+ ATPase domain LLC55_08130 IPR041445 RuvB, AAA lid domain LLC55_08130 IPR004605 DNA helicase, Holliday junction RuvB-type LLC55_08130 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08130 IPR036390 Winged helix DNA-binding domain superfamily LLC55_08130 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_08130 IPR008823 RuvB C-terminal winged helix domain LLC55_08130 IPR008824 RuvB-like P-loop domain LLC55_08135 IPR029069 HotDog domain superfamily LLC55_08135 IPR006683 Thioesterase domain LLC55_08135 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase LLC55_08135 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family LLC55_08135 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site LLC55_08140 IPR002898 MotA/TolQ/ExbB proton channel LLC55_08140 IPR014163 Tol-Pal system, TolQ LLC55_08145 IPR003400 Biopolymer transport protein ExbD/TolR LLC55_08145 IPR014168 Tol-Pal system protein TolR LLC55_08155 IPR014167 Tol-Pal system protein TolB LLC55_08155 IPR007195 TolB, N-terminal LLC55_08155 IPR036752 TolB, N-terminal domain superfamily LLC55_08155 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_08155 IPR011659 WD40-like Beta Propeller LLC55_08160 IPR006690 Outer membrane protein, OmpA-like, conserved site LLC55_08160 IPR036737 OmpA-like domain superfamily LLC55_08160 IPR039001 Peptidoglycan-associated lipoprotein LLC55_08160 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal LLC55_08160 IPR006664 Outer membrane protein, bacterial LLC55_08160 IPR006665 OmpA-like domain LLC55_08170 IPR007197 Radical SAM LLC55_08170 IPR024924 7-carboxy-7-deazaguanine synthase-like LLC55_08170 IPR013785 Aldolase-type TIM barrel LLC55_08175 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LLC55_08175 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LLC55_08175 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LLC55_08175 IPR036986 RNA-binding S4 domain superfamily LLC55_08175 IPR002942 RNA-binding S4 domain LLC55_08175 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_08175 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_08195 IPR001123 Amino acid exporter protein, LeuE-type LLC55_08195 IPR004777 L-lysine exporter/arginine exporter LLC55_08220 IPR008490 Transposase InsH, N-terminal LLC55_08230 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_08230 IPR018317 Queuosine biosynthesis protein QueC LLC55_08390 IPR002559 Transposase, IS4-like LLC55_08390 IPR008490 Transposase InsH, N-terminal LLC55_08420 IPR000726 Glycoside hydrolase, family 19, catalytic LLC55_08420 IPR023346 Lysozyme-like domain superfamily LLC55_08465 IPR030935 Phage portal protein PBSX family, Proteobacteria LLC55_08465 IPR006430 Phage portal protein PBSX family LLC55_08480 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_08480 IPR002941 DNA methylase N-4/N-6 LLC55_08480 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_08480 IPR001091 Restriction/modification DNA-methylase LLC55_08510 IPR036775 DNA polymerase, Y-family, little finger domain superfamily LLC55_08510 IPR017961 DNA polymerase, Y-family, little finger domain LLC55_08510 IPR025188 Domain of unknown function DUF4113 LLC55_08510 IPR024728 DNA polymerase type-Y, HhH motif LLC55_08510 IPR001126 UmuC domain LLC55_08535 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_08535 IPR001650 Helicase, C-terminal LLC55_08535 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_08535 IPR018982 RQC domain LLC55_08535 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain LLC55_08535 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial LLC55_08535 IPR002121 HRDC domain LLC55_08535 IPR010997 HRDC-like superfamily LLC55_08535 IPR004589 DNA helicase, ATP-dependent, RecQ type LLC55_08535 IPR011545 DEAD/DEAH box helicase domain LLC55_08535 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08540 IPR008331 Ferritin/DPS protein domain LLC55_08540 IPR012347 Ferritin-like LLC55_08540 IPR002177 DNA-binding protein Dps LLC55_08540 IPR009078 Ferritin-like superfamily LLC55_08540 IPR023188 DNA-binding protein Dps, conserved site LLC55_08545 IPR010222 RNA helicase HrpA LLC55_08545 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08545 IPR024590 RNA helicase HrpA, C-terminal LLC55_08545 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_08545 IPR007502 Helicase-associated domain LLC55_08545 IPR011709 Domain of unknown function DUF1605 LLC55_08545 IPR011545 DEAD/DEAH box helicase domain LLC55_08545 IPR003593 AAA+ ATPase domain LLC55_08545 IPR001650 Helicase, C-terminal LLC55_08575 IPR023885 4Fe4S-binding SPASM domain LLC55_08575 IPR013785 Aldolase-type TIM barrel LLC55_08575 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria LLC55_08575 IPR017200 Coenzyme PQQ synthesis protein E LLC55_08575 IPR007197 Radical SAM LLC55_08580 IPR008792 Coenzyme PQQ synthesis protein D LLC55_08580 IPR022479 Coenzyme PQQ synthesis D, bacteria LLC55_08580 IPR041881 Coenzyme PQQ synthesis protein D superfamily LLC55_08585 IPR011845 Coenzyme PQQ biosynthesis protein C LLC55_08585 IPR039068 Pyrroloquinoline-quinone synthase-like LLC55_08585 IPR004305 Thiaminase-2/PQQC LLC55_08585 IPR016084 Haem oxygenase-like, multi-helical LLC55_08590 IPR011842 Coenzyme PQQ biosynthesis protein B LLC55_08590 IPR001279 Metallo-beta-lactamase LLC55_08590 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_08595 IPR011725 Coenzyme PQQ biosynthesis protein A LLC55_08600 IPR002912 ACT domain LLC55_08600 IPR012675 Beta-grasp domain superfamily LLC55_08600 IPR003607 HD/PDEase domain LLC55_08600 IPR004811 RelA/SpoT family LLC55_08600 IPR007685 RelA/SpoT LLC55_08600 IPR004095 TGS LLC55_08600 IPR012676 TGS-like LLC55_08600 IPR033655 RelA, TGS domain LLC55_08610 IPR001173 Glycosyltransferase 2-like LLC55_08610 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_08615 IPR023346 Lysozyme-like domain superfamily LLC55_08615 IPR011813 Penicillin-binding protein 1B LLC55_08615 IPR036950 Penicillin binding protein transglycosylase domain LLC55_08615 IPR001460 Penicillin-binding protein, transpeptidase LLC55_08615 IPR028166 Bifunctional transglycosylase second domain LLC55_08615 IPR012338 Beta-lactamase/transpeptidase-like LLC55_08615 IPR001264 Glycosyl transferase, family 51 LLC55_08625 IPR006555 ATP-dependent helicase, C-terminal LLC55_08625 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type LLC55_08625 IPR006935 Helicase/UvrB, N-terminal LLC55_08625 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_08625 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08630 IPR000905 Gcp-like domain LLC55_08630 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB LLC55_08635 IPR005502 ADP-ribosylation/Crystallin J1 LLC55_08635 IPR036705 ADP-ribosylation/Crystallin J1 superfamily LLC55_08645 IPR011761 ATP-grasp fold LLC55_08645 IPR013815 ATP-grasp fold, subdomain 1 LLC55_08645 IPR006284 Glutathione synthetase, prokaryotic LLC55_08645 IPR004218 Prokaryotic glutathione synthetase, ATP-binding LLC55_08645 IPR004215 Prokaryotic glutathione synthetase, N-terminal LLC55_08645 IPR016185 Pre-ATP-grasp domain superfamily LLC55_08650 IPR001789 Signal transduction response regulator, receiver domain LLC55_08650 IPR011006 CheY-like superfamily LLC55_08655 IPR011006 CheY-like superfamily LLC55_08655 IPR001789 Signal transduction response regulator, receiver domain LLC55_08660 IPR039315 Chemotaxis protein CheW LLC55_08660 IPR036061 CheW-like domain superfamily LLC55_08660 IPR002545 CheW-like domain LLC55_08665 IPR003660 HAMP domain LLC55_08665 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_08665 IPR029095 NarX-like, N-terminal LLC55_08665 IPR004090 Chemotaxis methyl-accepting receptor LLC55_08670 IPR001789 Signal transduction response regulator, receiver domain LLC55_08670 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_08670 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_08670 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_08670 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_08670 IPR036641 HPT domain superfamily LLC55_08670 IPR011006 CheY-like superfamily LLC55_08670 IPR002545 CheW-like domain LLC55_08670 IPR036061 CheW-like domain superfamily LLC55_08670 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily LLC55_08670 IPR004105 Histidine kinase CheA-like, homodimeric domain LLC55_08670 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_08670 IPR005467 Histidine kinase domain LLC55_08685 IPR016181 Acyl-CoA N-acyltransferase LLC55_08685 IPR000182 GNAT domain LLC55_08695 IPR021908 Protein of unknown function DUF3520 LLC55_08695 IPR022156 Uncharacterised protein YfbK, N-terminal LLC55_08695 IPR002035 von Willebrand factor, type A LLC55_08695 IPR036465 von Willebrand factor A-like domain superfamily LLC55_08700 IPR036465 von Willebrand factor A-like domain superfamily LLC55_08700 IPR021908 Protein of unknown function DUF3520 LLC55_08700 IPR022156 Uncharacterised protein YfbK, N-terminal LLC55_08700 IPR002035 von Willebrand factor, type A LLC55_08710 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_08710 IPR000246 Peptidase T2, asparaginase 2 LLC55_08710 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal LLC55_08715 IPR005627 Copper homeostasis protein CutC LLC55_08715 IPR023648 Copper homeostasis CutC domain LLC55_08715 IPR036822 Copper homeostasis (CutC) domain superfamily LLC55_08755 IPR019801 Glycoside hydrolase, family 35, conserved site LLC55_08755 IPR026283 Beta-galactosidase 1-like LLC55_08755 IPR008979 Galactose-binding-like domain superfamily LLC55_08755 IPR031330 Glycoside hydrolase 35, catalytic domain LLC55_08755 IPR001944 Glycoside hydrolase, family 35 LLC55_08755 IPR017853 Glycoside hydrolase superfamily LLC55_08765 IPR012939 Glycosyl hydrolase family 92 LLC55_08765 IPR041371 Glycosyl hydrolase family 92 N-terminal domain LLC55_08765 IPR014718 Glycoside hydrolase-type carbohydrate-binding LLC55_08765 IPR005887 Alpha-1,2-mannosidase, putative LLC55_08765 IPR008928 Six-hairpin glycosidase superfamily LLC55_08840 IPR033838 Colicin V processing peptidase LLC55_08840 IPR005074 Peptidase C39, bacteriocin processing LLC55_08840 IPR039421 Type I protein exporter LLC55_08840 IPR017871 ABC transporter, conserved site LLC55_08840 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_08840 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_08840 IPR011527 ABC transporter type 1, transmembrane domain LLC55_08840 IPR003593 AAA+ ATPase domain LLC55_08840 IPR003439 ABC transporter-like LLC55_08845 IPR011658 PA14 domain LLC55_08845 IPR013783 Immunoglobulin-like fold LLC55_08845 IPR037524 PA14/GLEYA domain LLC55_08845 IPR017853 Glycoside hydrolase superfamily LLC55_08845 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LLC55_08845 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily LLC55_08845 IPR002772 Glycoside hydrolase family 3 C-terminal domain LLC55_08845 IPR026891 Fibronectin type III-like domain LLC55_08845 IPR001764 Glycoside hydrolase, family 3, N-terminal LLC55_08855 IPR029018 Beta-hexosaminidase-like, domain 2 LLC55_08855 IPR025705 Beta-hexosaminidase LLC55_08855 IPR015883 Glycoside hydrolase family 20, catalytic domain LLC55_08855 IPR017853 Glycoside hydrolase superfamily LLC55_08855 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal LLC55_08855 IPR037524 PA14/GLEYA domain LLC55_08855 IPR011658 PA14 domain LLC55_08865 IPR001223 Glycoside hydrolase family 18, catalytic domain LLC55_08865 IPR029070 Chitinase insertion domain superfamily LLC55_08865 IPR036779 LysM domain superfamily LLC55_08865 IPR041704 CFLE, GH18 catalytic domain LLC55_08865 IPR017853 Glycoside hydrolase superfamily LLC55_08865 IPR011583 Chitinase II LLC55_08865 IPR018392 LysM domain LLC55_08880 IPR003836 Glucokinase LLC55_08885 IPR029028 Alpha/beta knot methyltransferases LLC55_08885 IPR015947 PUA-like superfamily LLC55_08885 IPR006700 Ribosomal RNA small subunit methyltransferase E LLC55_08885 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_08890 IPR005814 Aminotransferase class-III LLC55_08890 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA LLC55_08890 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_08890 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_08890 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_08895 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_08895 IPR020084 NUDIX hydrolase, conserved site LLC55_08895 IPR000086 NUDIX hydrolase domain LLC55_08900 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ LLC55_08900 IPR020583 Inositol monophosphatase, metal-binding site LLC55_08900 IPR020550 Inositol monophosphatase, conserved site LLC55_08900 IPR000760 Inositol monophosphatase-like LLC55_08905 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core LLC55_08905 IPR011551 NTP pyrophosphohydrolase MazG LLC55_08920 IPR001107 Band 7 domain LLC55_08920 IPR036013 Band 7/SPFH domain superfamily LLC55_08920 IPR018080 Band 7/stomatin-like, conserved site LLC55_08920 IPR032435 Band 7, C-terminal extension LLC55_08920 IPR001972 Stomatin family LLC55_08930 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 LLC55_08930 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal LLC55_08930 IPR006222 Aminomethyltransferase, folate-binding domain LLC55_08930 IPR006223 Glycine cleavage system T protein LLC55_08930 IPR028896 Aminomethyltransferase-like LLC55_08930 IPR022903 Glycine cleavage system T protein, bacteria LLC55_08930 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain LLC55_08935 IPR017453 Glycine cleavage system H-protein, subgroup LLC55_08935 IPR033753 Glycine cleavage system H-protein/Simiate LLC55_08935 IPR002930 Glycine cleavage system H-protein LLC55_08935 IPR011053 Single hybrid motif LLC55_08935 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LLC55_08935 IPR000089 Biotin/lipoyl attachment LLC55_08970 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LLC55_08970 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LLC55_08970 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LLC55_08970 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LLC55_08970 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LLC55_08970 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type LLC55_08980 IPR009057 Homeobox-like domain superfamily LLC55_08980 IPR001647 DNA-binding HTH domain, TetR-type LLC55_08980 IPR023772 DNA-binding HTH domain, TetR-type, conserved site LLC55_08985 IPR039426 Vitamin B12 transporter BtuB-like LLC55_08985 IPR012910 TonB-dependent receptor, plug domain LLC55_08985 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_08985 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_08985 IPR010916 TonB box, conserved site LLC55_08985 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_08985 IPR010917 TonB-dependent receptor, conserved site LLC55_08995 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily LLC55_08995 IPR000397 Heat shock protein Hsp33 LLC55_08995 IPR016154 Heat shock protein Hsp33, C-terminal LLC55_08995 IPR016153 Heat shock protein Hsp33, N-terminal LLC55_09000 IPR036950 Penicillin binding protein transglycosylase domain LLC55_09000 IPR023346 Lysozyme-like domain superfamily LLC55_09000 IPR011812 Biosynthetic peptidoglycan transglycosylase LLC55_09000 IPR001264 Glycosyl transferase, family 51 LLC55_09005 IPR001173 Glycosyltransferase 2-like LLC55_09005 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_09030 IPR004254 AdipoR/Haemolysin-III-related LLC55_09030 IPR005744 Hly-III LLC55_09035 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_09035 IPR000795 Transcription factor, GTP-binding domain LLC55_09035 IPR005225 Small GTP-binding protein domain LLC55_09035 IPR041732 Peptide chain release factor 3, GTP-binding domain LLC55_09035 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily LLC55_09035 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09035 IPR004548 Peptide chain release factor 3 LLC55_09035 IPR031157 Tr-type G domain, conserved site LLC55_09035 IPR035647 EF-G domain III/V-like LLC55_09035 IPR032090 Peptide chain release factor 3, C-terminal LLC55_09040 IPR013731 Opacity-associated protein A, N-terminal LLC55_09040 IPR018392 LysM domain LLC55_09040 IPR016047 Peptidase M23 LLC55_09040 IPR011055 Duplicated hybrid motif LLC55_09045 IPR029058 Alpha/Beta hydrolase fold LLC55_09045 IPR000073 Alpha/beta hydrolase fold-1 LLC55_09045 IPR008220 Homoserine/serine acetyltransferase MetX-like LLC55_09050 IPR011821 O-succinylhomoserine (thiol)-lyase LLC55_09050 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_09050 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_09050 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_09050 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme LLC55_09060 IPR029009 Allosteric substrate binding domain superfamily LLC55_09060 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form LLC55_09060 IPR005130 Serine dehydratase-like, alpha subunit LLC55_09060 IPR005131 Serine dehydratase beta chain LLC55_09075 IPR007372 Lipid/polyisoprenoid-binding, YceI-like LLC55_09075 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily LLC55_09075 IPR023480 Uncharacterised protein family UPF0312/YceI LLC55_09085 IPR023480 Uncharacterised protein family UPF0312/YceI LLC55_09085 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily LLC55_09085 IPR007372 Lipid/polyisoprenoid-binding, YceI-like LLC55_09090 IPR011006 CheY-like superfamily LLC55_09090 IPR003660 HAMP domain LLC55_09090 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_09090 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_09090 IPR005467 Histidine kinase domain LLC55_09090 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_09090 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_09090 IPR033414 Periplasmic sensor domain LLC55_09090 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_09090 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_09090 IPR001789 Signal transduction response regulator, receiver domain LLC55_09090 IPR036641 HPT domain superfamily LLC55_09095 IPR036641 HPT domain superfamily LLC55_09095 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_09095 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_09095 IPR033414 Periplasmic sensor domain LLC55_09095 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_09095 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_09095 IPR005467 Histidine kinase domain LLC55_09095 IPR001789 Signal transduction response regulator, receiver domain LLC55_09095 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_09095 IPR003660 HAMP domain LLC55_09095 IPR011006 CheY-like superfamily LLC55_09095 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_09100 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_09100 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_09100 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_09100 IPR005467 Histidine kinase domain LLC55_09100 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_09100 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_09100 IPR003660 HAMP domain LLC55_09100 IPR011006 CheY-like superfamily LLC55_09100 IPR036641 HPT domain superfamily LLC55_09100 IPR001789 Signal transduction response regulator, receiver domain LLC55_09100 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_09100 IPR033414 Periplasmic sensor domain LLC55_09135 IPR011683 Glycosyl hydrolase family 53 LLC55_09135 IPR017853 Glycoside hydrolase superfamily LLC55_09145 IPR001387 Cro/C1-type helix-turn-helix domain LLC55_09145 IPR018653 Domain of unknown function DUF2083,transcriptional regulator LLC55_09145 IPR026281 HTH-type transcriptional regulator RamB LLC55_09145 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_09145 IPR010359 IrrE N-terminal-like domain LLC55_09150 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_09150 IPR016160 Aldehyde dehydrogenase, cysteine active site LLC55_09150 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_09150 IPR015590 Aldehyde dehydrogenase domain LLC55_09150 IPR010061 Methylmalonate-semialdehyde dehydrogenase LLC55_09150 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_09155 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LLC55_09155 IPR006089 Acyl-CoA dehydrogenase, conserved site LLC55_09155 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LLC55_09155 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LLC55_09155 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LLC55_09155 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LLC55_09155 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LLC55_09160 IPR029045 ClpP/crotonase-like domain superfamily LLC55_09160 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LLC55_09160 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_09160 IPR014748 Enoyl-CoA hydratase, C-terminal LLC55_09165 IPR036291 NAD(P)-binding domain superfamily LLC55_09165 IPR012802 Fatty oxidation complex, alpha subunit FadJ LLC55_09165 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LLC55_09165 IPR029045 ClpP/crotonase-like domain superfamily LLC55_09165 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_09165 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal LLC55_09165 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding LLC55_09165 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site LLC55_09165 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_09170 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain LLC55_09170 IPR036291 NAD(P)-binding domain superfamily LLC55_09170 IPR015815 3-hydroxyisobutyrate dehydrogenase-related LLC55_09170 IPR011548 3-hydroxyisobutyrate dehydrogenase LLC55_09170 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_09170 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_09170 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site LLC55_09170 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding LLC55_09175 IPR002524 Cation efflux protein LLC55_09175 IPR036837 Cation efflux protein, cytoplasmic domain superfamily LLC55_09175 IPR027469 Cation efflux transmembrane domain superfamily LLC55_09180 IPR012802 Fatty oxidation complex, alpha subunit FadJ LLC55_09180 IPR036291 NAD(P)-binding domain superfamily LLC55_09180 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_09180 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding LLC55_09180 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_09180 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal LLC55_09180 IPR029045 ClpP/crotonase-like domain superfamily LLC55_09185 IPR039425 RNA polymerase sigma-70 like LLC55_09185 IPR014284 RNA polymerase sigma-70 like domain LLC55_09185 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LLC55_09185 IPR007627 RNA polymerase sigma-70 region 2 LLC55_09185 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LLC55_09185 IPR014286 RNA polymerase sigma-70 RpoE type LLC55_09185 IPR013325 RNA polymerase sigma factor, region 2 LLC55_09185 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_09185 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_09195 IPR001940 Peptidase S1C LLC55_09195 IPR009003 Peptidase S1, PA clan LLC55_09195 IPR011782 Peptidase S1C, Do LLC55_09195 IPR001478 PDZ domain LLC55_09195 IPR036034 PDZ superfamily LLC55_09200 IPR006297 Elongation factor 4 LLC55_09200 IPR035647 EF-G domain III/V-like LLC55_09200 IPR000640 Elongation factor EFG, domain V-like LLC55_09200 IPR004161 Translation elongation factor EFTu-like, domain 2 LLC55_09200 IPR031157 Tr-type G domain, conserved site LLC55_09200 IPR038363 LepA, C-terminal domain superfamily LLC55_09200 IPR013842 GTP-binding protein LepA, C-terminal LLC55_09200 IPR035654 Elongation factor 4, domain IV LLC55_09200 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09200 IPR005225 Small GTP-binding protein domain LLC55_09200 IPR000795 Transcription factor, GTP-binding domain LLC55_09205 IPR019533 Peptidase S26 LLC55_09205 IPR019757 Peptidase S26A, signal peptidase I, lysine active site LLC55_09205 IPR019756 Peptidase S26A, signal peptidase I, serine active site LLC55_09205 IPR000223 Peptidase S26A, signal peptidase I LLC55_09205 IPR019758 Peptidase S26A, signal peptidase I, conserved site LLC55_09205 IPR036286 LexA/Signal peptidase-like superfamily LLC55_09215 IPR014720 Double-stranded RNA-binding domain LLC55_09215 IPR011907 Ribonuclease III LLC55_09215 IPR000999 Ribonuclease III domain LLC55_09215 IPR036389 Ribonuclease III, endonuclease domain superfamily LLC55_09220 IPR030388 Era-type guanine nucleotide-binding (G) domain LLC55_09220 IPR006073 GTP binding domain LLC55_09220 IPR015946 K homology domain-like, alpha/beta LLC55_09220 IPR004044 K Homology domain, type 2 LLC55_09220 IPR009019 K homology domain superfamily, prokaryotic type LLC55_09220 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09220 IPR005225 Small GTP-binding protein domain LLC55_09220 IPR005662 GTP-binding protein Era LLC55_09225 IPR003717 Recombination protein O, RecO LLC55_09225 IPR012340 Nucleic acid-binding, OB-fold LLC55_09225 IPR022572 DNA replication/recombination mediator RecO, N-terminal LLC55_09225 IPR037278 ARFGAP/RecO-like zinc finger LLC55_09235 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD LLC55_09235 IPR030390 RNA methyltransferase TrmA, active site LLC55_09235 IPR030391 RNA methyltransferase TrmA, conserved site LLC55_09235 IPR012340 Nucleic acid-binding, OB-fold LLC55_09235 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_09235 IPR002792 TRAM domain LLC55_09235 IPR010280 (Uracil-5)-methyltransferase family LLC55_09240 IPR033469 CYTH-like domain superfamily LLC55_09240 IPR023577 CYTH domain LLC55_09240 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like LLC55_09250 IPR008490 Transposase InsH, N-terminal LLC55_09255 IPR001853 DSBA-like thioredoxin domain LLC55_09255 IPR036249 Thioredoxin-like superfamily LLC55_09260 IPR034721 Bacterial renalase LLC55_09260 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_09260 IPR002937 Amine oxidase LLC55_09265 IPR007357 Deoxyribodipyrimidine photolyase-related protein LLC55_09265 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily LLC55_09265 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_09270 IPR017853 Glycoside hydrolase superfamily LLC55_09270 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LLC55_09270 IPR001764 Glycoside hydrolase, family 3, N-terminal LLC55_09270 IPR019800 Glycoside hydrolase, family 3, active site LLC55_09270 IPR022956 Beta-hexosaminidase, bacterial LLC55_09275 IPR000836 Phosphoribosyltransferase domain LLC55_09275 IPR029057 Phosphoribosyltransferase-like LLC55_09275 IPR005904 Hypoxanthine phosphoribosyl transferase LLC55_09280 IPR018099 Purine phosphorylase, family 2, conserved site LLC55_09280 IPR000845 Nucleoside phosphorylase domain LLC55_09280 IPR010044 Methylthioadenosine phosphorylase (MTAP) LLC55_09280 IPR035994 Nucleoside phosphorylase superfamily LLC55_09285 IPR012156 Cold shock, CspA LLC55_09285 IPR012340 Nucleic acid-binding, OB-fold LLC55_09285 IPR002059 Cold-shock protein, DNA-binding LLC55_09285 IPR019844 Cold-shock (CSD) domain LLC55_09285 IPR011129 Cold shock domain LLC55_09290 IPR017631 Salicylate 1-monooxygenase LLC55_09290 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_09290 IPR002938 FAD-binding domain LLC55_09315 IPR011545 DEAD/DEAH box helicase domain LLC55_09315 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_09315 IPR001650 Helicase, C-terminal LLC55_09315 IPR003593 AAA+ ATPase domain LLC55_09315 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09315 IPR013701 DEAD/H associated LLC55_09320 IPR022865 DNA ligase, ATP-dependent, bacterial/archaeal LLC55_09320 IPR016059 DNA ligase, ATP-dependent, conserved site LLC55_09320 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily LLC55_09320 IPR012310 DNA ligase, ATP-dependent, central LLC55_09320 IPR012309 DNA ligase, ATP-dependent, C-terminal LLC55_09320 IPR000977 DNA ligase, ATP-dependent LLC55_09320 IPR012340 Nucleic acid-binding, OB-fold LLC55_09320 IPR012308 DNA ligase, ATP-dependent, N-terminal LLC55_09330 IPR000977 DNA ligase, ATP-dependent LLC55_09330 IPR016059 DNA ligase, ATP-dependent, conserved site LLC55_09330 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily LLC55_09330 IPR012340 Nucleic acid-binding, OB-fold LLC55_09330 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like LLC55_09330 IPR012308 DNA ligase, ATP-dependent, N-terminal LLC55_09330 IPR012310 DNA ligase, ATP-dependent, central LLC55_09330 IPR012309 DNA ligase, ATP-dependent, C-terminal LLC55_09345 IPR011006 CheY-like superfamily LLC55_09345 IPR000160 GGDEF domain LLC55_09345 IPR029787 Nucleotide cyclase LLC55_09345 IPR001789 Signal transduction response regulator, receiver domain LLC55_09360 IPR020617 Thiolase, C-terminal LLC55_09360 IPR002155 Thiolase LLC55_09360 IPR016039 Thiolase-like LLC55_09360 IPR020615 Thiolase, acyl-enzyme intermediate active site LLC55_09360 IPR020610 Thiolase, active site LLC55_09360 IPR020613 Thiolase, conserved site LLC55_09360 IPR020616 Thiolase, N-terminal LLC55_09365 IPR005546 Autotransporter beta-domain LLC55_09365 IPR036709 Autotransporter beta-domain superfamily LLC55_09365 IPR006315 Outer membrane autotransporter barrel LLC55_09365 IPR011050 Pectin lyase fold/virulence factor LLC55_09365 IPR013425 Autotransporter-associated beta strand repeat LLC55_09365 IPR036852 Peptidase S8/S53 domain superfamily LLC55_09365 IPR022398 Peptidase S8, subtilisin, His-active site LLC55_09365 IPR023828 Peptidase S8, subtilisin, Ser-active site LLC55_09365 IPR034061 Autotransporter serine protease peptidase domain LLC55_09365 IPR000209 Peptidase S8/S53 domain LLC55_09365 IPR015500 Peptidase S8, subtilisin-related LLC55_09370 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase LLC55_09370 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal LLC55_09370 IPR033524 Leu/Phe/Val dehydrogenases active site LLC55_09370 IPR036291 NAD(P)-binding domain superfamily LLC55_09370 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal LLC55_09370 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain LLC55_09390 IPR009760 Protein of unknown function DUF1328 LLC55_09400 IPR020458 Zinc finger, DksA/TraR C4-type conserved site LLC55_09400 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria LLC55_09400 IPR000962 Zinc finger, DksA/TraR C4-type LLC55_09430 IPR004753 Cell shape determining protein MreB LLC55_09435 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain LLC55_09450 IPR004624 PhnA protein LLC55_09450 IPR013988 PhnA protein, C-terminal LLC55_09450 IPR013987 PhnA protein, N-terminal LLC55_09460 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal LLC55_09460 IPR013785 Aldolase-type TIM barrel LLC55_09465 IPR020846 Major facilitator superfamily domain LLC55_09465 IPR011701 Major facilitator superfamily LLC55_09465 IPR036259 MFS transporter superfamily LLC55_09510 IPR016181 Acyl-CoA N-acyltransferase LLC55_09510 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD LLC55_09510 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal LLC55_09520 IPR019897 RidA, conserved site LLC55_09520 IPR035959 RutC-like superfamily LLC55_09520 IPR006175 YjgF/YER057c/UK114 family LLC55_09520 IPR035709 RutC family, YoaB-like LLC55_09525 IPR003333 Mycolic acid cyclopropane synthase LLC55_09525 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_09540 IPR003333 Mycolic acid cyclopropane synthase LLC55_09540 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_09565 IPR039425 RNA polymerase sigma-70 like LLC55_09565 IPR014284 RNA polymerase sigma-70 like domain LLC55_09565 IPR007627 RNA polymerase sigma-70 region 2 LLC55_09565 IPR007630 RNA polymerase sigma-70 region 4 LLC55_09565 IPR013325 RNA polymerase sigma factor, region 2 LLC55_09565 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_09565 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_09580 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria LLC55_09580 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB LLC55_09580 IPR011005 Dihydropteroate synthase-like LLC55_09580 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LLC55_09580 IPR007202 4Fe-4S domain LLC55_09580 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_09595 IPR014758 Methionyl-tRNA synthetase LLC55_09595 IPR033911 Methioninyl-tRNA synthetase core domain LLC55_09595 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LLC55_09595 IPR002547 tRNA-binding domain LLC55_09595 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_09595 IPR012340 Nucleic acid-binding, OB-fold LLC55_09595 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_09595 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain LLC55_09595 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal LLC55_09595 IPR029038 Methionyl-tRNA synthetase, Zn-domain LLC55_09595 IPR023458 Methionine-tRNA ligase, type 1 LLC55_09595 IPR015413 Methionyl/Leucyl tRNA synthetase LLC55_09615 IPR004841 Amino acid permease/ SLC12A domain LLC55_09615 IPR004840 Amino acid permease, conserved site LLC55_09620 IPR036589 Homocysteine-binding domain superfamily LLC55_09620 IPR003726 Homocysteine-binding domain LLC55_09620 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT LLC55_09635 IPR003744 Queuosine precursor transporter LLC55_09650 IPR008490 Transposase InsH, N-terminal LLC55_09670 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09670 IPR031157 Tr-type G domain, conserved site LLC55_09670 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal LLC55_09670 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain LLC55_09670 IPR002891 Adenylyl-sulfate kinase LLC55_09670 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_09670 IPR000795 Transcription factor, GTP-binding domain LLC55_09670 IPR011779 Sulphate adenylyltransferase, large subunit LLC55_09690 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_09690 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site LLC55_09690 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_09690 IPR039429 Serine hydroxymethyltransferase-like domain LLC55_09690 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_09690 IPR001085 Serine hydroxymethyltransferase LLC55_09710 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09710 IPR022374 Energy-dependent translational throttle protein EttA LLC55_09710 IPR017871 ABC transporter, conserved site LLC55_09710 IPR003439 ABC transporter-like LLC55_09710 IPR032781 ABC-transporter extension domain LLC55_09710 IPR003593 AAA+ ATPase domain LLC55_09735 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V LLC55_09735 IPR014185 Glutathione-dependent formaldehyde-activating enzyme LLC55_09735 IPR011057 Mss4-like superfamily LLC55_09740 IPR020843 Polyketide synthase, enoylreductase domain LLC55_09740 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_09740 IPR011032 GroES-like superfamily LLC55_09740 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LLC55_09740 IPR013154 Alcohol dehydrogenase, N-terminal LLC55_09740 IPR014183 Alcohol dehydrogenase class III LLC55_09740 IPR036291 NAD(P)-binding domain superfamily LLC55_09745 IPR038390 Metal-sensitive transcriptional repressor superfamily LLC55_09745 IPR003735 Metal-sensitive transcriptional repressor LLC55_09755 IPR011006 CheY-like superfamily LLC55_09755 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_09755 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_09755 IPR001789 Signal transduction response regulator, receiver domain LLC55_09755 IPR039420 Transcriptional regulatory protein WalR-like LLC55_09755 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_09760 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_09760 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_09760 IPR005467 Histidine kinase domain LLC55_09760 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_09760 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_09760 IPR003660 HAMP domain LLC55_09760 IPR032404 Two-component sensor protein CpxA, periplasmic domain LLC55_09760 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_09760 IPR038515 CpxA, periplasmic domain superfamily LLC55_09795 IPR017809 Glutamate--cysteine ligase EgtA, Actinobacteria LLC55_09795 IPR035434 Glutamate--cysteine ligase, bacteria and plant LLC55_09795 IPR006336 Glutamate--cysteine ligase, GCS2 LLC55_09795 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LLC55_09810 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_09810 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC LLC55_09810 IPR030393 EngB-type guanine nucleotide-binding (G) domain LLC55_09810 IPR006073 GTP binding domain LLC55_09815 IPR009056 Cytochrome c-like domain LLC55_09815 IPR036909 Cytochrome c-like domain superfamily LLC55_09815 IPR024167 Cytochrome c4-like LLC55_09845 IPR008490 Transposase InsH, N-terminal LLC55_09845 IPR002559 Transposase, IS4-like LLC55_09850 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_09850 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site LLC55_09850 IPR002912 ACT domain LLC55_09850 IPR005789 Threonine dehydratase, catabolic LLC55_09850 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_09860 IPR008490 Transposase InsH, N-terminal LLC55_09865 IPR002559 Transposase, IS4-like LLC55_09865 IPR008490 Transposase InsH, N-terminal LLC55_09870 IPR008490 Transposase InsH, N-terminal LLC55_09905 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain LLC55_09905 IPR002646 Poly A polymerase, head domain LLC55_09905 IPR006674 HD domain LLC55_09905 IPR003607 HD/PDEase domain LLC55_09905 IPR012006 tRNA nucleotidyltransferase, proteobacteria LLC55_09915 IPR001598 Transposase, IS30, conserved site LLC55_09915 IPR036397 Ribonuclease H superfamily LLC55_09915 IPR012337 Ribonuclease H-like superfamily LLC55_09915 IPR001584 Integrase, catalytic core LLC55_09915 IPR009057 Homeobox-like domain superfamily LLC55_09920 IPR002559 Transposase, IS4-like LLC55_09920 IPR008490 Transposase InsH, N-terminal LLC55_09960 IPR002509 NodB homology domain LLC55_09960 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB LLC55_09960 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LLC55_09960 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal LLC55_09965 IPR001173 Glycosyltransferase 2-like LLC55_09965 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_09965 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA LLC55_09975 IPR006680 Amidohydrolase-related LLC55_09975 IPR003764 N-acetylglucosamine-6-phosphate deacetylase LLC55_09975 IPR032466 Metal-dependent hydrolase LLC55_09975 IPR011059 Metal-dependent hydrolase, composite domain superfamily LLC55_09980 IPR017932 Glutamine amidotransferase type 2 domain LLC55_09980 IPR035466 GlmS/AgaS, SIS domain 1 LLC55_09980 IPR035490 GlmS/FrlB, SIS domain 2 LLC55_09980 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising LLC55_09980 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_09980 IPR001347 Sugar isomerase (SIS) LLC55_09985 IPR028082 Periplasmic binding protein-like I LLC55_09985 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_09985 IPR000843 LacI-type HTH domain LLC55_09990 IPR011701 Major facilitator superfamily LLC55_09990 IPR036259 MFS transporter superfamily LLC55_09990 IPR005964 Bacterial glucose/galactose transporter LLC55_09995 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LLC55_09995 IPR000524 Transcription regulator HTH, GntR LLC55_09995 IPR011663 UbiC transcription regulator-associated LLC55_09995 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_09995 IPR036390 Winged helix DNA-binding domain superfamily LLC55_10010 IPR013783 Immunoglobulin-like fold LLC55_10010 IPR008964 Invasin/intimin cell-adhesion fragments LLC55_10010 IPR017853 Glycoside hydrolase superfamily LLC55_10010 IPR006104 Glycosyl hydrolases family 2, sugar binding domain LLC55_10010 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich LLC55_10010 IPR023232 Glycoside hydrolase, family 2, active site LLC55_10010 IPR006103 Glycoside hydrolase family 2, catalytic domain LLC55_10010 IPR040605 Glycoside hydrolase family 2, domain 5 LLC55_10010 IPR008979 Galactose-binding-like domain superfamily LLC55_10010 IPR032311 Domain of unknown function DUF4982 LLC55_10010 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily LLC55_10010 IPR006101 Glycoside hydrolase, family 2 LLC55_10045 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_10045 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_10045 IPR036291 NAD(P)-binding domain superfamily LLC55_10050 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK LLC55_10050 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily LLC55_10055 IPR029151 Periplasmic sensor-like domain superfamily LLC55_10055 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_10055 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_10055 IPR005467 Histidine kinase domain LLC55_10055 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_10055 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_10055 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_10060 IPR011006 CheY-like superfamily LLC55_10060 IPR001789 Signal transduction response regulator, receiver domain LLC55_10065 IPR013654 PAS fold-2 LLC55_10065 IPR013515 Phytochrome, central region LLC55_10065 IPR001294 Phytochrome LLC55_10065 IPR016132 Phytochrome chromophore attachment domain LLC55_10065 IPR035965 PAS domain superfamily LLC55_10065 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_10065 IPR003018 GAF domain LLC55_10065 IPR005467 Histidine kinase domain LLC55_10065 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_10065 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_10065 IPR029016 GAF-like domain superfamily LLC55_10065 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_10070 IPR007055 BON domain LLC55_10070 IPR014004 Transport-associated and nodulation domain, bacteria LLC55_10075 IPR004104 Oxidoreductase, C-terminal LLC55_10075 IPR000683 Oxidoreductase, N-terminal LLC55_10075 IPR036291 NAD(P)-binding domain superfamily LLC55_10080 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_10080 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type LLC55_10080 IPR006114 6-phosphogluconate dehydrogenase, C-terminal LLC55_10080 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding LLC55_10080 IPR036291 NAD(P)-binding domain superfamily LLC55_10080 IPR006183 6-phosphogluconate dehydrogenase LLC55_10080 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_10115 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_10115 IPR020084 NUDIX hydrolase, conserved site LLC55_10115 IPR000086 NUDIX hydrolase domain LLC55_10115 IPR041750 Bifunctional NMN adenylyltransferase/Nudix hydrolase, N-terminal NMNAT domain LLC55_10115 IPR004821 Cytidyltransferase-like domain LLC55_10115 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_10125 IPR008490 Transposase InsH, N-terminal LLC55_10135 IPR029045 ClpP/crotonase-like domain superfamily LLC55_10135 IPR001478 PDZ domain LLC55_10135 IPR036034 PDZ superfamily LLC55_10135 IPR004447 C-terminal-processing peptidase S41A LLC55_10135 IPR005151 Tail specific protease LLC55_10135 IPR020992 Tail specific protease, C-terminal LLC55_10135 IPR040573 Tail specific protease, N-terminal domain LLC55_10145 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_10145 IPR021188 N6 adenine-specific DNA methyltransferase, TaqI class LLC55_10145 IPR023135 N6 adenine-specific DNA methyltransferase, TaqI class, C-terminal LLC55_10145 IPR011639 Restriction modification methylase Eco57I LLC55_10145 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_10145 IPR025931 TaqI-like C-terminal specificity domain LLC55_10155 IPR013785 Aldolase-type TIM barrel LLC55_10155 IPR006638 Elp3/MiaB/NifB LLC55_10155 IPR031691 Lipoyl synthase, N-terminal LLC55_10155 IPR003698 Lipoyl synthase LLC55_10155 IPR007197 Radical SAM LLC55_10160 IPR020605 Octanoyltransferase, conserved site LLC55_10160 IPR000544 Octanoyltransferase LLC55_10160 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain LLC55_10165 IPR007454 Uncharacterised protein family UPF0250 LLC55_10165 IPR027471 YbeD-like domain superfamily LLC55_10180 IPR012338 Beta-lactamase/transpeptidase-like LLC55_10180 IPR015956 Penicillin-binding protein, C-terminal domain superfamily LLC55_10180 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A LLC55_10180 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal LLC55_10180 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily LLC55_10180 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal LLC55_10185 IPR036680 Sporulation-like domain superfamily LLC55_10185 IPR007730 Sporulation-like domain LLC55_10185 IPR012997 Rare lipoprotein A LLC55_10185 IPR034718 Endolytic peptidoglycan transglycosylase RlpA LLC55_10185 IPR009009 RlpA-like protein, double-psi beta-barrel domain LLC55_10185 IPR036908 RlpA-like domain superfamily LLC55_10190 IPR023346 Lysozyme-like domain superfamily LLC55_10190 IPR011757 Lytic transglycosylase MltB LLC55_10190 IPR031304 Transglycosylase SLT domain 2 LLC55_10210 IPR012337 Ribonuclease H-like superfamily LLC55_10210 IPR001584 Integrase, catalytic core LLC55_10210 IPR009057 Homeobox-like domain superfamily LLC55_10210 IPR001598 Transposase, IS30, conserved site LLC55_10210 IPR036397 Ribonuclease H superfamily LLC55_10220 IPR036779 LysM domain superfamily LLC55_10220 IPR018392 LysM domain LLC55_10220 IPR007921 CHAP domain LLC55_10220 IPR038765 Papain-like cysteine peptidase superfamily LLC55_10220 IPR005877 YSIRK Gram-positive signal peptide LLC55_10225 IPR006531 Gp5 N-terminal LLC55_10225 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_10225 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_10225 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_10235 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site LLC55_10235 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA LLC55_10235 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB LLC55_10240 IPR001460 Penicillin-binding protein, transpeptidase LLC55_10240 IPR017790 Penicillin-binding protein 2 LLC55_10240 IPR012338 Beta-lactamase/transpeptidase-like LLC55_10240 IPR005311 Penicillin-binding protein, dimerisation domain LLC55_10240 IPR036138 Penicillin-binding protein, dimerisation domain superfamily LLC55_10250 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 LLC55_10250 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 LLC55_10250 IPR007221 Rod shape-determining protein MreC LLC55_10255 IPR004753 Cell shape determining protein MreB LLC55_10260 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LLC55_10260 IPR011611 Carbohydrate kinase PfkB LLC55_10260 IPR029056 Ribokinase-like LLC55_10280 IPR016181 Acyl-CoA N-acyltransferase LLC55_10280 IPR000182 GNAT domain LLC55_10290 IPR039562 Membrane fusion protein, biotin-lipoyl like domain LLC55_10300 IPR004033 UbiE/COQ5 methyltransferase LLC55_10300 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_10300 IPR023576 UbiE/COQ5 methyltransferase, conserved site LLC55_10305 IPR000160 GGDEF domain LLC55_10305 IPR000014 PAS domain LLC55_10305 IPR013656 PAS fold-4 LLC55_10305 IPR029787 Nucleotide cyclase LLC55_10305 IPR000700 PAS-associated, C-terminal LLC55_10305 IPR035965 PAS domain superfamily LLC55_10310 IPR034016 Aminopeptidase N-type LLC55_10310 IPR024571 ERAP1-like C-terminal domain LLC55_10310 IPR042097 Aminopeptidase N-like , N-terminal LLC55_10310 IPR014782 Peptidase M1, membrane alanine aminopeptidase LLC55_10310 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase LLC55_10325 IPR004491 Heat shock protein HslU LLC55_10325 IPR003593 AAA+ ATPase domain LLC55_10325 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_10325 IPR019489 Clp ATPase, C-terminal LLC55_10325 IPR003959 ATPase, AAA-type, core LLC55_10330 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_10330 IPR001353 Proteasome, subunit alpha/beta LLC55_10330 IPR022281 ATP-dependent protease, HslV subunit LLC55_10330 IPR023333 Proteasome B-type subunit LLC55_10340 IPR023009 Tyrosine recombinase XerC/XerD LLC55_10340 IPR011931 Tyrosine recombinase XerC LLC55_10340 IPR004107 Integrase, SAM-like, N-terminal LLC55_10340 IPR010998 Integrase/recombinase, N-terminal LLC55_10340 IPR002104 Integrase, catalytic domain LLC55_10340 IPR013762 Integrase-like, catalytic domain superfamily LLC55_10340 IPR011010 DNA breaking-rejoining enzyme, catalytic core LLC55_10350 IPR001653 Diaminopimelate epimerase, DapF LLC55_10350 IPR018510 Diaminopimelate epimerase, active site LLC55_10365 IPR023302 Peptidase S9A, N-terminal domain LLC55_10365 IPR029058 Alpha/Beta hydrolase fold LLC55_10365 IPR002470 Peptidase S9A, prolyl oligopeptidase LLC55_10365 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LLC55_10370 IPR004839 Aminotransferase, class I/classII LLC55_10370 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site LLC55_10370 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_10370 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_10385 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LLC55_10385 IPR002470 Peptidase S9A, prolyl oligopeptidase LLC55_10385 IPR029058 Alpha/Beta hydrolase fold LLC55_10385 IPR023302 Peptidase S9A, N-terminal domain LLC55_10410 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily LLC55_10410 IPR022418 Porphobilinogen deaminase, C-terminal LLC55_10410 IPR022417 Porphobilinogen deaminase, N-terminal LLC55_10410 IPR000860 Porphobilinogen deaminase LLC55_10410 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site LLC55_10415 IPR001789 Signal transduction response regulator, receiver domain LLC55_10415 IPR007492 LytTR DNA-binding domain LLC55_10415 IPR011006 CheY-like superfamily LLC55_10420 IPR010559 Signal transduction histidine kinase, internal region LLC55_10420 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_10420 IPR003018 GAF domain LLC55_10420 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region LLC55_10430 IPR001173 Glycosyltransferase 2-like LLC55_10430 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_10430 IPR023725 Glucan biosynthesis glucosyltransferase H LLC55_10455 IPR036513 STAS domain superfamily LLC55_10455 IPR002645 STAS domain LLC55_10455 IPR001902 SLC26A/SulP transporter LLC55_10455 IPR011547 SLC26A/SulP transporter domain LLC55_10455 IPR018045 Sulphate anion transporter, conserved site LLC55_10460 IPR018087 Glycoside hydrolase, family 5, conserved site LLC55_10460 IPR001547 Glycoside hydrolase, family 5 LLC55_10460 IPR012291 CBM2, carbohydrate-binding domain superfamily LLC55_10460 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily LLC55_10460 IPR001919 Carbohydrate-binding type-2 domain LLC55_10460 IPR017853 Glycoside hydrolase superfamily LLC55_10475 IPR035919 EAL domain superfamily LLC55_10475 IPR001633 EAL domain LLC55_10475 IPR000160 GGDEF domain LLC55_10475 IPR005330 MHYT domain LLC55_10475 IPR029787 Nucleotide cyclase LLC55_10510 IPR001661 Glycoside hydrolase, family 37 LLC55_10510 IPR008928 Six-hairpin glycosidase superfamily LLC55_10510 IPR012341 Six-hairpin glycosidase-like superfamily LLC55_10510 IPR023720 Trehalase, periplasmic LLC55_10510 IPR018232 Glycoside hydrolase, family 37, conserved site LLC55_10530 IPR004488 Magnesium/cobalt transport protein CorA LLC55_10530 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB LLC55_10540 IPR004840 Amino acid permease, conserved site LLC55_10540 IPR004841 Amino acid permease/ SLC12A domain LLC55_10550 IPR012291 CBM2, carbohydrate-binding domain superfamily LLC55_10550 IPR036434 1, 4-beta cellobiohydrolase superfamily LLC55_10550 IPR013783 Immunoglobulin-like fold LLC55_10550 IPR001524 Glycoside hydrolase, family 6, conserved site LLC55_10550 IPR036116 Fibronectin type III superfamily LLC55_10550 IPR003961 Fibronectin type III LLC55_10550 IPR018366 Carbohydrate-binding type-2, conserved site LLC55_10550 IPR001919 Carbohydrate-binding type-2 domain LLC55_10550 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily LLC55_10550 IPR016288 1, 4-beta cellobiohydrolase LLC55_10555 IPR036749 Expansin, cellulose-binding-like domain superfamily LLC55_10555 IPR036908 RlpA-like domain superfamily LLC55_10555 IPR009009 RlpA-like protein, double-psi beta-barrel domain LLC55_10560 IPR000620 EamA domain LLC55_10580 IPR011673 Protein of unknown function DUF1615 LLC55_10620 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_10620 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_10620 IPR036291 NAD(P)-binding domain superfamily LLC55_10640 IPR005256 Anthranilate synthase component I, PabB-like LLC55_10640 IPR006805 Anthranilate synthase component I, N-terminal LLC55_10640 IPR019999 Anthranilate synthase component I-like LLC55_10640 IPR005801 ADC synthase LLC55_10640 IPR015890 Chorismate-utilising enzyme, C-terminal LLC55_10645 IPR005218 Diacylglycerol/lipid kinase LLC55_10645 IPR001206 Diacylglycerol kinase, catalytic domain LLC55_10645 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LLC55_10645 IPR022433 Lipid kinase YegS LLC55_10645 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LLC55_10650 IPR016181 Acyl-CoA N-acyltransferase LLC55_10650 IPR000182 GNAT domain LLC55_10655 IPR013785 Aldolase-type TIM barrel LLC55_10655 IPR026019 Ribulose-phosphate 3-epimerase LLC55_10655 IPR000056 Ribulose-phosphate 3-epimerase-like LLC55_10655 IPR011060 Ribulose-phosphate binding barrel LLC55_10660 IPR007791 Co-chaperone DjlA, N-terminal LLC55_10660 IPR001623 DnaJ domain LLC55_10660 IPR036869 Chaperone J-domain superfamily LLC55_10660 IPR029024 TerB-like LLC55_10660 IPR023749 Co-chaperone DjlA LLC55_10665 IPR018236 SAICAR synthetase, conserved site LLC55_10665 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase LLC55_10665 IPR028923 SAICAR synthetase/ADE2, N-terminal LLC55_10690 IPR005663 Monovalent cation proton antiporter subunit A LLC55_10690 IPR007182 Na+/H+ antiporter MnhB subunit-related protein LLC55_10690 IPR025383 Domain of unknown function DUF4040 LLC55_10690 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal LLC55_10690 IPR005281 Monovalent cation:proton antiporter, subunit B LLC55_10690 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LLC55_10695 IPR006673 Mnh complex subunit C1 LLC55_10695 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like LLC55_10700 IPR004775 Na(+)/H(+) antiporter subunit D1 LLC55_10700 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LLC55_10710 IPR007208 Na(+)/H(+) antiporter subunit F-like LLC55_10715 IPR005133 Na+/H+ antiporter subunit G LLC55_10725 IPR002559 Transposase, IS4-like LLC55_10725 IPR008490 Transposase InsH, N-terminal LLC55_10730 IPR011051 RmlC-like cupin domain superfamily LLC55_10730 IPR022950 Homogentisate 1,2-dioxygenase, bacterial LLC55_10730 IPR005708 Homogentisate 1,2-dioxygenase LLC55_10730 IPR014710 RmlC-like jelly roll fold LLC55_10735 IPR037523 Vicinal oxygen chelate (VOC) domain LLC55_10735 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LLC55_10735 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal LLC55_10735 IPR005956 4-hydroxyphenylpyruvate dioxygenase LLC55_10735 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LLC55_10735 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal LLC55_10740 IPR036390 Winged helix DNA-binding domain superfamily LLC55_10740 IPR023187 Transcriptional regulator MarR-type, conserved site LLC55_10740 IPR000835 MarR-type HTH domain LLC55_10740 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_10750 IPR000109 Proton-dependent oligopeptide transporter family LLC55_10750 IPR020846 Major facilitator superfamily domain LLC55_10750 IPR005279 Dipeptide/tripeptide permease LLC55_10750 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site LLC55_10750 IPR036259 MFS transporter superfamily LLC55_10755 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like LLC55_10755 IPR004981 Tryptophan 2,3-dioxygenase LLC55_10805 IPR020610 Thiolase, active site LLC55_10805 IPR020617 Thiolase, C-terminal LLC55_10805 IPR020613 Thiolase, conserved site LLC55_10805 IPR020616 Thiolase, N-terminal LLC55_10805 IPR016039 Thiolase-like LLC55_10805 IPR012806 Acetyl-CoA C-acyltransferase FadI LLC55_10805 IPR002155 Thiolase LLC55_10805 IPR020615 Thiolase, acyl-enzyme intermediate active site LLC55_10855 IPR008490 Transposase InsH, N-terminal LLC55_10855 IPR002559 Transposase, IS4-like LLC55_10885 IPR000755 D-alanyl-D-alanine dipeptidase LLC55_10885 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily LLC55_10890 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily LLC55_10890 IPR002502 N-acetylmuramoyl-L-alanine amidase domain LLC55_10890 IPR036365 PGBD-like superfamily LLC55_10890 IPR036366 PGBD superfamily LLC55_10900 IPR036849 Enolase-like, C-terminal domain superfamily LLC55_10900 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal LLC55_10900 IPR029065 Enolase C-terminal domain-like LLC55_10900 IPR029017 Enolase-like, N-terminal LLC55_10900 IPR034603 Dipeptide epimerase LLC55_10900 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site LLC55_10900 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain LLC55_10935 IPR002293 Amino acid/polyamine transporter I LLC55_10935 IPR004754 Amino acid antiporter LLC55_10970 IPR038972 Inner membrane protein YiaA-like LLC55_10970 IPR008024 YiaAB two helix LLC55_10975 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_10975 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase LLC55_10975 IPR012938 Glucose/Sorbosone dehydrogenase LLC55_11005 IPR026891 Fibronectin type III-like domain LLC55_11005 IPR019800 Glycoside hydrolase, family 3, active site LLC55_11005 IPR002772 Glycoside hydrolase family 3 C-terminal domain LLC55_11005 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily LLC55_11005 IPR013783 Immunoglobulin-like fold LLC55_11005 IPR017853 Glycoside hydrolase superfamily LLC55_11005 IPR001764 Glycoside hydrolase, family 3, N-terminal LLC55_11005 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LLC55_11010 IPR006156 Dihydroneopterin aldolase LLC55_11010 IPR006157 Dihydroneopterin aldolase/epimerase domain LLC55_11015 IPR000905 Gcp-like domain LLC55_11015 IPR017861 Kae1/TsaD family LLC55_11015 IPR017860 Peptidase M22, conserved site LLC55_11015 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD LLC55_11020 IPR001911 Ribosomal protein S21 LLC55_11020 IPR018278 Ribosomal protein S21, conserved site LLC55_11020 IPR038380 Ribosomal protein S21 superfamily LLC55_11025 IPR042184 YqeY/Aim41, N-terminal domain LLC55_11025 IPR019004 Uncharacterised protein YqeY/Aim41 LLC55_11025 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 LLC55_11025 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like LLC55_11035 IPR023679 Uncharacterised protein family UPF0761, bacterial LLC55_11035 IPR017039 Virulence factor BrkB LLC55_11040 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LLC55_11040 IPR013264 DNA primase, catalytic core, N-terminal LLC55_11040 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily LLC55_11040 IPR006295 DNA primase, DnaG LLC55_11040 IPR013173 DNA primase DnaG, DnaB-binding domain LLC55_11040 IPR036977 DNA Primase, CHC2-type zinc finger LLC55_11040 IPR034151 Bacterial DnaG primase, TOPRIM domain LLC55_11040 IPR006171 TOPRIM domain LLC55_11040 IPR030846 DNA primase DnaG, bacteria LLC55_11040 IPR019475 DNA primase, DnaB-helicase binding domain LLC55_11040 IPR002694 Zinc finger, CHC2-type LLC55_11060 IPR016833 Putative sodium bile acid cotransporter LLC55_11060 IPR038770 Sodium/solute symporter superfamily LLC55_11075 IPR030470 UbiA prenyltransferase conserved site LLC55_11075 IPR006369 Protohaem IX farnesyltransferase LLC55_11075 IPR000537 UbiA prenyltransferase family LLC55_11100 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle LLC55_11100 IPR033945 Cytochrome c oxidase subunit III domain LLC55_11100 IPR024791 Cytochrome c oxidase subunit III LLC55_11100 IPR035973 Cytochrome c oxidase subunit III-like superfamily LLC55_11100 IPR000298 Cytochrome c oxidase subunit III-like LLC55_11105 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily LLC55_11105 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 LLC55_11115 IPR033944 Cytochrome c oxidase subunit I domain LLC55_11115 IPR036927 Cytochrome c oxidase-like, subunit I superfamily LLC55_11115 IPR014241 Cytochrome c oxidase, subunit I bacterial type LLC55_11115 IPR023616 Cytochrome c oxidase-like, subunit I domain LLC55_11115 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site LLC55_11115 IPR000883 Cytochrome c oxidase subunit I LLC55_11120 IPR005728 Rickettsial palindromic element LLC55_11120 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily LLC55_11120 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain LLC55_11120 IPR034210 Cytochrome c oxidase subunit 2, C-terminal LLC55_11120 IPR002429 Cytochrome c oxidase subunit II-like C-terminal LLC55_11120 IPR001505 Copper centre Cu(A) LLC55_11120 IPR014222 Cytochrome c oxidase, subunit II LLC55_11120 IPR008972 Cupredoxin LLC55_11130 IPR013321 Arc-type ribbon-helix-helix LLC55_11130 IPR016160 Aldehyde dehydrogenase, cysteine active site LLC55_11130 IPR015590 Aldehyde dehydrogenase domain LLC55_11130 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_11130 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_11130 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LLC55_11130 IPR010985 Ribbon-helix-helix LLC55_11130 IPR002872 Proline dehydrogenase domain LLC55_11130 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_11130 IPR024089 Proline dehydrogenase PutA, domain I/II LLC55_11130 IPR024090 Proline dehydrogenase PutA, domain I LLC55_11130 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain LLC55_11130 IPR029041 FAD-linked oxidoreductase-like LLC55_11130 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 LLC55_11130 IPR025703 Bifunctional protein PutA LLC55_11130 IPR024082 Proline dehydrogenase PutA, domain II LLC55_11145 IPR002024 Bacterioferritin LLC55_11145 IPR009040 Ferritin-like diiron domain LLC55_11145 IPR009078 Ferritin-like superfamily LLC55_11145 IPR008331 Ferritin/DPS protein domain LLC55_11145 IPR012347 Ferritin-like LLC55_11155 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_11155 IPR020084 NUDIX hydrolase, conserved site LLC55_11155 IPR000086 NUDIX hydrolase domain LLC55_11155 IPR022927 RNA pyrophosphohydrolase RppH LLC55_11170 IPR020574 Ribosomal protein S9, conserved site LLC55_11170 IPR023035 Ribosomal protein S9, bacterial/plastid LLC55_11170 IPR000754 Ribosomal protein S9 LLC55_11170 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_11170 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_11175 IPR005823 Ribosomal protein L13, bacterial-type LLC55_11175 IPR023563 Ribosomal protein L13, conserved site LLC55_11175 IPR036899 Ribosomal protein L13 superfamily LLC55_11175 IPR005822 Ribosomal protein L13 LLC55_11180 IPR012347 Ferritin-like LLC55_11180 IPR009078 Ferritin-like superfamily LLC55_11180 IPR011566 Ubiquinone biosynthesis protein Coq7 LLC55_11185 IPR000390 Small multidrug resistance protein family LLC55_11190 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic LLC55_11190 IPR009165 S-adenosylmethionine decarboxylase, bacterial LLC55_11190 IPR016067 S-adenosylmethionine decarboxylase, core LLC55_11195 IPR018490 Cyclic nucleotide-binding-like LLC55_11195 IPR000595 Cyclic nucleotide-binding domain LLC55_11195 IPR012318 Crp-type HTH domain LLC55_11195 IPR014710 RmlC-like jelly roll fold LLC55_11195 IPR018335 Transcription regulator HTH, Crp-type, conserved site LLC55_11195 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_11195 IPR036390 Winged helix DNA-binding domain superfamily LLC55_11205 IPR013798 Indole-3-glycerol phosphate synthase LLC55_11205 IPR001468 Indole-3-glycerol phosphate synthase, conserved site LLC55_11205 IPR011060 Ribulose-phosphate binding barrel LLC55_11205 IPR013785 Aldolase-type TIM barrel LLC55_11210 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily LLC55_11210 IPR017459 Glycosyl transferase family 3, N-terminal domain LLC55_11210 IPR000312 Glycosyl transferase, family 3 LLC55_11210 IPR005940 Anthranilate phosphoribosyl transferase LLC55_11210 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily LLC55_11220 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain LLC55_11220 IPR017926 Glutamine amidotransferase LLC55_11220 IPR029062 Class I glutamine amidotransferase-like LLC55_11245 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric LLC55_11255 IPR008490 Transposase InsH, N-terminal LLC55_11300 IPR001207 Transposase, mutator type LLC55_11310 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal LLC55_11310 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 LLC55_11310 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF LLC55_11320 IPR017439 Amidohydrolase LLC55_11320 IPR036264 Bacterial exopeptidase dimerisation domain LLC55_11320 IPR002933 Peptidase M20 LLC55_11320 IPR011650 Peptidase M20, dimerisation domain LLC55_11325 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_11325 IPR022824 Multidrug resistance protein MdtA LLC55_11325 IPR006143 RND efflux pump, membrane fusion protein LLC55_11330 IPR022831 Multidrug resistance protein MdtB LLC55_11330 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LLC55_11330 IPR001036 Acriflavin resistance protein LLC55_11335 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LLC55_11335 IPR001036 Acriflavin resistance protein LLC55_11335 IPR023931 Multidrug resistance protein MdtC LLC55_11340 IPR009770 Domain of unknown function DUF1338 LLC55_11375 IPR001763 Rhodanese-like domain LLC55_11375 IPR036873 Rhodanese-like domain superfamily LLC55_11380 IPR003708 Bacterial protein export chaperone SecB LLC55_11380 IPR035958 SecB-like superfamily LLC55_11385 IPR036291 NAD(P)-binding domain superfamily LLC55_11385 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal LLC55_11385 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal LLC55_11385 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_11385 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_11385 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent LLC55_11395 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding LLC55_11395 IPR000399 TPP-binding enzyme, conserved site LLC55_11395 IPR029035 DHS-like NAD/FAD-binding domain superfamily LLC55_11395 IPR012000 Thiamine pyrophosphate enzyme, central domain LLC55_11395 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain LLC55_11395 IPR029061 Thiamin diphosphate-binding fold LLC55_11400 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_11400 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_11400 IPR029151 Periplasmic sensor-like domain superfamily LLC55_11400 IPR005467 Histidine kinase domain LLC55_11400 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_11400 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_11400 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_11405 IPR003593 AAA+ ATPase domain LLC55_11405 IPR002197 DNA binding HTH domain, Fis-type LLC55_11405 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_11405 IPR001789 Signal transduction response regulator, receiver domain LLC55_11405 IPR002078 RNA polymerase sigma factor 54 interaction domain LLC55_11405 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LLC55_11405 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LLC55_11405 IPR025944 Sigma-54 interaction domain, conserved site LLC55_11405 IPR011006 CheY-like superfamily LLC55_11405 IPR009057 Homeobox-like domain superfamily LLC55_11420 IPR011701 Major facilitator superfamily LLC55_11420 IPR020846 Major facilitator superfamily domain LLC55_11420 IPR036259 MFS transporter superfamily LLC55_11425 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_11425 IPR029028 Alpha/beta knot methyltransferases LLC55_11425 IPR001537 tRNA/rRNA methyltransferase, SpoU type LLC55_11425 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase LLC55_11440 IPR016039 Thiolase-like LLC55_11440 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 LLC55_11440 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal LLC55_11440 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LLC55_11445 IPR040198 Fido domain-containing protein LLC55_11445 IPR025758 Fic/DOC N-terminal LLC55_11445 IPR003812 Fido domain LLC55_11445 IPR036597 Fido-like domain superfamily LLC55_11445 IPR026287 Protein adenylyltransferase SoFic-like LLC55_11450 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class LLC55_11450 IPR002941 DNA methylase N-4/N-6 LLC55_11450 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_11450 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_11460 IPR000639 Epoxide hydrolase-like LLC55_11460 IPR029058 Alpha/Beta hydrolase fold LLC55_11460 IPR000073 Alpha/beta hydrolase fold-1 LLC55_11465 IPR005358 Putative zinc- or iron-chelating domain containing protein LLC55_11470 IPR020845 AMP-binding, conserved site LLC55_11470 IPR000873 AMP-dependent synthetase/ligase LLC55_11470 IPR042099 AMP-dependent synthetase-like superfamily LLC55_11475 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase LLC55_11475 IPR036291 NAD(P)-binding domain superfamily LLC55_11485 IPR008490 Transposase InsH, N-terminal LLC55_11495 IPR006674 HD domain LLC55_11495 IPR006675 HDIG domain LLC55_11495 IPR037522 HD-GYP domain LLC55_11495 IPR003607 HD/PDEase domain LLC55_11495 IPR021812 Protein of unknown function DUF3391 LLC55_11500 IPR011701 Major facilitator superfamily LLC55_11500 IPR020846 Major facilitator superfamily domain LLC55_11500 IPR036259 MFS transporter superfamily LLC55_11500 IPR005829 Sugar transporter, conserved site LLC55_11525 IPR001451 Hexapeptide repeat LLC55_11525 IPR011004 Trimeric LpxA-like superfamily LLC55_11530 IPR005358 Putative zinc- or iron-chelating domain containing protein LLC55_11535 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase LLC55_11535 IPR004404 Dihydroxy-acid dehydratase LLC55_11535 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site LLC55_11535 IPR037237 IlvD/EDD, N-terminal domain LLC55_11535 IPR042096 Dihydroxy-acid dehydratase, C-terminal LLC55_11540 IPR013762 Integrase-like, catalytic domain superfamily LLC55_11540 IPR011010 DNA breaking-rejoining enzyme, catalytic core LLC55_11540 IPR011946 Integrase, integron-type LLC55_11540 IPR010998 Integrase/recombinase, N-terminal LLC55_11540 IPR004107 Integrase, SAM-like, N-terminal LLC55_11540 IPR002104 Integrase, catalytic domain LLC55_11560 IPR002559 Transposase, IS4-like LLC55_11560 IPR008490 Transposase InsH, N-terminal LLC55_11570 IPR001260 Coproporphyrinogen III oxidase, aerobic LLC55_11570 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily LLC55_11570 IPR018375 Coproporphyrinogen III oxidase, conserved site LLC55_11575 IPR036397 Ribonuclease H superfamily LLC55_11575 IPR012337 Ribonuclease H-like superfamily LLC55_11575 IPR029060 PIN-like domain superfamily LLC55_11575 IPR008918 Helix-hairpin-helix motif, class 2 LLC55_11575 IPR002298 DNA polymerase A LLC55_11575 IPR020045 DNA polymerase I-like, H3TH domain LLC55_11575 IPR001098 DNA-directed DNA polymerase, family A, palm domain LLC55_11575 IPR019760 DNA-directed DNA polymerase, family A, conserved site LLC55_11575 IPR036279 5'-3' exonuclease, C-terminal domain superfamily LLC55_11575 IPR002421 5'-3' exonuclease, N-terminal LLC55_11575 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal LLC55_11575 IPR002562 3'-5' exonuclease domain LLC55_11575 IPR018320 DNA polymerase 1 LLC55_11600 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal LLC55_11600 IPR004660 Pyruvate dehydrogenase E1 component LLC55_11600 IPR041621 Pyruvate dehydrogenase E1 component, middle domain LLC55_11600 IPR029061 Thiamin diphosphate-binding fold LLC55_11600 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LLC55_11600 IPR005474 Transketolase, N-terminal LLC55_11615 IPR005042 TAL effector repeat LLC55_11660 IPR007372 Lipid/polyisoprenoid-binding, YceI-like LLC55_11660 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily LLC55_11660 IPR023480 Uncharacterised protein family UPF0312/YceI LLC55_11665 IPR029479 Nitroreductase LLC55_11665 IPR000415 Nitroreductase-like LLC55_11665 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE LLC55_11690 IPR003744 Queuosine precursor transporter LLC55_11695 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme LLC55_11695 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain LLC55_11695 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase LLC55_11705 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_11705 IPR013658 SMP-30/Gluconolactonase/LRE-like region LLC55_11705 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_11705 IPR005511 Senescence marker protein-30 (SMP-30) LLC55_11730 IPR013785 Aldolase-type TIM barrel LLC55_11730 IPR006218 DAHP synthetase I/KDSA LLC55_11730 IPR006219 DHAP synthase, class 1 LLC55_11750 IPR027410 TCP-1-like chaperonin intermediate domain superfamily LLC55_11750 IPR027413 GroEL-like equatorial domain superfamily LLC55_11750 IPR018370 Chaperonin Cpn60, conserved site LLC55_11750 IPR001844 Chaperonin Cpn60 LLC55_11750 IPR002423 Chaperonin Cpn60/TCP-1 family LLC55_11750 IPR027409 GroEL-like apical domain superfamily LLC55_11755 IPR020818 GroES chaperonin family LLC55_11755 IPR037124 GroES chaperonin superfamily LLC55_11755 IPR018369 Chaperonin GroES, conserved site LLC55_11755 IPR011032 GroES-like superfamily LLC55_11780 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_11780 IPR023753 FAD/NAD(P)-binding domain LLC55_11790 IPR007630 RNA polymerase sigma-70 region 4 LLC55_11790 IPR014284 RNA polymerase sigma-70 like domain LLC55_11790 IPR000943 RNA polymerase sigma-70 LLC55_11790 IPR007627 RNA polymerase sigma-70 region 2 LLC55_11790 IPR013325 RNA polymerase sigma factor, region 2 LLC55_11790 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_11790 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria LLC55_11790 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_11795 IPR036895 Uracil-DNA glycosylase-like domain superfamily LLC55_11795 IPR005122 Uracil-DNA glycosylase-like LLC55_11795 IPR018085 Uracil-DNA glycosylase, active site LLC55_11795 IPR002043 Uracil-DNA glycosylase family 1 LLC55_11800 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase LLC55_11800 IPR001789 Signal transduction response regulator, receiver domain LLC55_11800 IPR011006 CheY-like superfamily LLC55_11800 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type LLC55_11800 IPR035909 Methylesterase CheB, C-terminal LLC55_11805 IPR004513 Cell division protein FtsX LLC55_11805 IPR040690 FtsX, extracellular domain LLC55_11810 IPR003593 AAA+ ATPase domain LLC55_11810 IPR003439 ABC transporter-like LLC55_11810 IPR017871 ABC transporter, conserved site LLC55_11810 IPR005286 Cell division protein FtsE, ATP-binding LLC55_11810 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_11815 IPR023554 ATP-dependent RNA helicase RhlB type LLC55_11815 IPR022077 ATP-dependent RNA helicase RhlB LLC55_11815 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LLC55_11815 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_11815 IPR011545 DEAD/DEAH box helicase domain LLC55_11815 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_11815 IPR014014 RNA helicase, DEAD-box type, Q motif LLC55_11815 IPR001650 Helicase, C-terminal LLC55_11820 IPR013766 Thioredoxin domain LLC55_11820 IPR017937 Thioredoxin, conserved site LLC55_11820 IPR036249 Thioredoxin-like superfamily LLC55_11820 IPR005746 Thioredoxin LLC55_11825 IPR011113 Rho termination factor, RNA-binding domain LLC55_11825 IPR011112 Rho termination factor, N-terminal LLC55_11825 IPR041703 Transcription termination factor Rho, ATP binding domain LLC55_11825 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_11825 IPR004665 Transcription termination factor Rho LLC55_11825 IPR011129 Cold shock domain LLC55_11825 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LLC55_11825 IPR003593 AAA+ ATPase domain LLC55_11825 IPR012340 Nucleic acid-binding, OB-fold LLC55_11835 IPR008490 Transposase InsH, N-terminal LLC55_11845 IPR000184 Bacterial surface antigen (D15) LLC55_11845 IPR039910 Surface antigen D15-like LLC55_11845 IPR035243 TamA, POTRA domain 1 LLC55_11850 IPR007452 Translocation and assembly module TamB LLC55_11890 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase LLC55_11890 IPR002123 Phospholipid/glycerol acyltransferase LLC55_11900 IPR009081 Phosphopantetheine binding ACP domain LLC55_11900 IPR036736 ACP-like superfamily LLC55_11900 IPR003231 Acyl carrier protein (ACP) LLC55_11900 IPR006162 Phosphopantetheine attachment site LLC55_11905 IPR006905 Flavin-dependent halogenase LLC55_11905 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_11910 IPR031038 Chorismatase, FkbO/Hyg5 family LLC55_11910 IPR035959 RutC-like superfamily LLC55_11950 IPR002577 Helix-turn-helix, HxlR type LLC55_11950 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_11950 IPR036390 Winged helix DNA-binding domain superfamily LLC55_11955 IPR036291 NAD(P)-binding domain superfamily LLC55_11955 IPR008030 NmrA-like domain LLC55_11965 IPR004684 2-keto-3-deoxygluconate permease LLC55_11965 IPR018395 2-keto-3-deoxygluconate permease, subgroup LLC55_11970 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal LLC55_11970 IPR006276 Cobalamin-independent methionine synthase LLC55_11970 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal LLC55_11970 IPR038071 UROD/MetE-like superfamily LLC55_11980 IPR005025 NADPH-dependent FMN reductase-like LLC55_11980 IPR019912 FMN reductase, MsuE-like LLC55_11980 IPR029039 Flavoprotein-like superfamily LLC55_11985 IPR036390 Winged helix DNA-binding domain superfamily LLC55_11985 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_11985 IPR000847 Transcription regulator HTH, LysR LLC55_11985 IPR005119 LysR, substrate-binding LLC55_11985 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain LLC55_11990 IPR003828 Epoxyqueuosine reductase QueH LLC55_12010 IPR011006 CheY-like superfamily LLC55_12010 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_12010 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_12010 IPR001789 Signal transduction response regulator, receiver domain LLC55_12010 IPR039420 Transcriptional regulatory protein WalR-like LLC55_12010 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_12015 IPR004810 Formyltetrahydrofolate deformylase LLC55_12015 IPR036477 Formyl transferase, N-terminal domain superfamily LLC55_12015 IPR002376 Formyl transferase, N-terminal LLC55_12015 IPR002912 ACT domain LLC55_12015 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain LLC55_12035 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain LLC55_12035 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site LLC55_12035 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_12035 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_12035 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding LLC55_12035 IPR015815 3-hydroxyisobutyrate dehydrogenase-related LLC55_12035 IPR036291 NAD(P)-binding domain superfamily LLC55_12040 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal LLC55_12040 IPR023663 NADPH dehydrogenase LLC55_12040 IPR013785 Aldolase-type TIM barrel LLC55_12045 IPR029035 DHS-like NAD/FAD-binding domain superfamily LLC55_12045 IPR003000 Sirtuin family LLC55_12045 IPR026591 Sirtuin, catalytic core small domain superfamily LLC55_12045 IPR026587 Sirtuin, class II LLC55_12045 IPR026590 Sirtuin family, catalytic core domain LLC55_12055 IPR036259 MFS transporter superfamily LLC55_12055 IPR011701 Major facilitator superfamily LLC55_12055 IPR020846 Major facilitator superfamily domain LLC55_12060 IPR036390 Winged helix DNA-binding domain superfamily LLC55_12060 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_12060 IPR000847 Transcription regulator HTH, LysR LLC55_12060 IPR005119 LysR, substrate-binding LLC55_12075 IPR001130 TatD family LLC55_12075 IPR018228 Deoxyribonuclease, TatD-related, conserved site LLC55_12075 IPR024918 3'-5' ssDNA/RNA exonuclease TatD LLC55_12075 IPR032466 Metal-dependent hydrolase LLC55_12125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_12125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_12125 IPR000192 Aminotransferase class V domain LLC55_12125 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LLC55_12125 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase LLC55_12125 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_12195 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LLC55_12195 IPR029058 Alpha/Beta hydrolase fold LLC55_12195 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_12200 IPR011761 ATP-grasp fold LLC55_12200 IPR013815 ATP-grasp fold, subdomain 1 LLC55_12200 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LLC55_12200 IPR041265 Propionyl-coenzyme A carboxylase, BT domain LLC55_12200 IPR016185 Pre-ATP-grasp domain superfamily LLC55_12200 IPR011054 Rudiment single hybrid motif LLC55_12200 IPR005482 Biotin carboxylase, C-terminal LLC55_12200 IPR000089 Biotin/lipoyl attachment LLC55_12200 IPR011764 Biotin carboxylation domain LLC55_12200 IPR001882 Biotin-binding site LLC55_12200 IPR005481 Biotin carboxylase-like, N-terminal domain LLC55_12200 IPR011053 Single hybrid motif LLC55_12205 IPR029045 ClpP/crotonase-like domain superfamily LLC55_12205 IPR034733 Acetyl-CoA carboxylase LLC55_12205 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal LLC55_12205 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal LLC55_12210 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LLC55_12210 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LLC55_12210 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LLC55_12210 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LLC55_12210 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LLC55_12210 IPR006089 Acyl-CoA dehydrogenase, conserved site LLC55_12210 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LLC55_12265 IPR003495 CobW/HypB/UreG, nucleotide-binding domain LLC55_12265 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12265 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal LLC55_12285 IPR005654 ATPase, AFG1-like LLC55_12285 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12285 IPR030870 Cell division protein ZapE LLC55_12300 IPR039426 Vitamin B12 transporter BtuB-like LLC55_12300 IPR012910 TonB-dependent receptor, plug domain LLC55_12300 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_12300 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_12300 IPR010916 TonB box, conserved site LLC55_12300 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_12300 IPR010917 TonB-dependent receptor, conserved site LLC55_12305 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_12305 IPR019734 Tetratricopeptide repeat LLC55_12305 IPR013026 Tetratricopeptide repeat-containing domain LLC55_12305 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12310 IPR008909 DALR anticodon binding LLC55_12310 IPR015944 Glycine-tRNA ligase, beta subunit LLC55_12310 IPR006194 Glycine-tRNA synthetase, heterodimeric LLC55_12315 IPR006194 Glycine-tRNA synthetase, heterodimeric LLC55_12315 IPR002310 Glycine-tRNA ligase, alpha subunit LLC55_12320 IPR007831 General secretory system II, protein E, N-terminal LLC55_12320 IPR042181 Type II secretion system, protein E, N-terminal LLC55_12320 IPR003593 AAA+ ATPase domain LLC55_12320 IPR013374 ATPase, type IV, pilus assembly, PilB LLC55_12320 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12320 IPR001482 Type II/IV secretion system protein LLC55_12320 IPR037257 General secretory system II, protein E, N-terminal superfamily LLC55_12335 IPR025777 GMP synthetase ATP pyrophosphatase domain LLC55_12335 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_12335 IPR022955 GMP synthase LLC55_12335 IPR001674 GMP synthase, C-terminal LLC55_12335 IPR004739 GMP synthase, glutamine amidotransferase LLC55_12335 IPR017926 Glutamine amidotransferase LLC55_12335 IPR029062 Class I glutamine amidotransferase-like LLC55_12345 IPR019820 Sec-independent periplasmic protein translocase, conserved site LLC55_12345 IPR002033 Sec-independent periplasmic protein translocase TatC LLC55_12350 IPR003369 Sec-independent protein translocase protein TatA/B/E LLC55_12350 IPR018448 Twin-arginine translocation protein TatB LLC55_12355 IPR003369 Sec-independent protein translocase protein TatA/B/E LLC55_12355 IPR006312 Sec-independent protein translocase protein TatA/E LLC55_12365 IPR001015 Ferrochelatase LLC55_12365 IPR033659 Ferrochelatase, N-terminal LLC55_12365 IPR033644 Ferrochelatase, C-terminal LLC55_12365 IPR019772 Ferrochelatase, active site LLC55_12390 IPR007476 Putative exonuclease, RdgC LLC55_12395 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type LLC55_12395 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase LLC55_12395 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal LLC55_12395 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_12400 IPR001998 Xylose isomerase LLC55_12400 IPR036237 Xylose isomerase-like superfamily LLC55_12400 IPR013452 Xylose isomerase, bacterial-type LLC55_12405 IPR028082 Periplasmic binding protein-like I LLC55_12405 IPR000843 LacI-type HTH domain LLC55_12405 IPR006377 Catabolite control protein A LLC55_12405 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_12415 IPR011100 Glycosyl hydrolase family 67, catalytic domain LLC55_12415 IPR017853 Glycoside hydrolase superfamily LLC55_12415 IPR005154 Alpha glucuronidase, N-terminal LLC55_12415 IPR029018 Beta-hexosaminidase-like, domain 2 LLC55_12415 IPR011395 Alpha glucuronidase LLC55_12415 IPR011099 Glycosyl hydrolase family 67, C-terminal LLC55_12415 IPR037054 Alpha-glucuronidase, C-terminal domain superfamily LLC55_12425 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain LLC55_12425 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site LLC55_12425 IPR034589 D-mannonate dehydratase-like LLC55_12425 IPR036849 Enolase-like, C-terminal domain superfamily LLC55_12425 IPR029017 Enolase-like, N-terminal LLC55_12425 IPR029065 Enolase C-terminal domain-like LLC55_12425 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal LLC55_12425 IPR034593 Mandelate racemase-like LLC55_12430 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily LLC55_12430 IPR041542 Beta-xylosidase, C-terminal Concanavalin A-like domain LLC55_12430 IPR006710 Glycoside hydrolase, family 43 LLC55_12430 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LLC55_12435 IPR011658 PA14 domain LLC55_12435 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily LLC55_12435 IPR013783 Immunoglobulin-like fold LLC55_12435 IPR017853 Glycoside hydrolase superfamily LLC55_12435 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LLC55_12435 IPR026891 Fibronectin type III-like domain LLC55_12435 IPR002772 Glycoside hydrolase family 3 C-terminal domain LLC55_12435 IPR001764 Glycoside hydrolase, family 3, N-terminal LLC55_12435 IPR037524 PA14/GLEYA domain LLC55_12440 IPR036291 NAD(P)-binding domain superfamily LLC55_12440 IPR013131 Mannitol dehydrogenase, N-terminal LLC55_12440 IPR023027 Mannitol dehydrogenase, conserved site LLC55_12440 IPR000669 Mannitol dehydrogenase LLC55_12440 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_12440 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_12440 IPR013118 Mannitol dehydrogenase, C-terminal LLC55_12460 IPR032466 Metal-dependent hydrolase LLC55_12460 IPR003766 Uronate isomerase LLC55_12465 IPR017853 Glycoside hydrolase superfamily LLC55_12465 IPR031158 Glycosyl hydrolases family 10, active site LLC55_12465 IPR001000 Glycoside hydrolase family 10 domain LLC55_12465 IPR018366 Carbohydrate-binding type-2, conserved site LLC55_12465 IPR005084 Carbohydrate binding module family 6 LLC55_12465 IPR001919 Carbohydrate-binding type-2 domain LLC55_12465 IPR008979 Galactose-binding-like domain superfamily LLC55_12465 IPR012291 CBM2, carbohydrate-binding domain superfamily LLC55_12465 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily LLC55_12490 IPR036259 MFS transporter superfamily LLC55_12490 IPR039672 Lactose permease-like LLC55_12490 IPR001927 Sodium:galactoside symporter LLC55_12490 IPR018043 Sodium:galactoside symporter, conserved site LLC55_12495 IPR006710 Glycoside hydrolase, family 43 LLC55_12495 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LLC55_12540 IPR005804 Fatty acid desaturase domain LLC55_12545 IPR017938 Riboflavin synthase-like beta-barrel LLC55_12545 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site LLC55_12545 IPR036010 2Fe-2S ferredoxin-like superfamily LLC55_12545 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain LLC55_12545 IPR001433 Oxidoreductase FAD/NAD(P)-binding LLC55_12545 IPR012675 Beta-grasp domain superfamily LLC55_12545 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LLC55_12545 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LLC55_12545 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain LLC55_12545 IPR017927 FAD-binding domain, ferredoxin reductase-type LLC55_12550 IPR009057 Homeobox-like domain superfamily LLC55_12550 IPR001647 DNA-binding HTH domain, TetR-type LLC55_12550 IPR023764 Transcriptional repressor HTH, FabR LLC55_12565 IPR036397 Ribonuclease H superfamily LLC55_12565 IPR001598 Transposase, IS30, conserved site LLC55_12565 IPR012337 Ribonuclease H-like superfamily LLC55_12565 IPR001584 Integrase, catalytic core LLC55_12565 IPR009057 Homeobox-like domain superfamily LLC55_12580 IPR000835 MarR-type HTH domain LLC55_12580 IPR036390 Winged helix DNA-binding domain superfamily LLC55_12580 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_12585 IPR019953 Organic hydroperoxide resistance protein famiy LLC55_12585 IPR036102 OsmC/Ohr superfamily LLC55_12585 IPR003718 OsmC/Ohr family LLC55_12585 IPR015946 K homology domain-like, alpha/beta LLC55_12665 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_12665 IPR013430 Toxin-antitoxin system, antidote protein, HigA LLC55_12665 IPR001387 Cro/C1-type helix-turn-helix domain LLC55_12670 IPR007711 Toxin HigB-1 LLC55_12670 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily LLC55_12675 IPR027785 UvrD-like helicase C-terminal domain LLC55_12675 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12675 IPR006344 RecBCD enzyme subunit RecD LLC55_12680 IPR004586 RecBCD enzyme subunit RecB LLC55_12680 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type LLC55_12680 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12680 IPR034739 UvrD/AddA helicase, N-terminal LLC55_12680 IPR000212 DNA helicase, UvrD/REP type LLC55_12680 IPR014017 UvrD-like DNA helicase, C-terminal LLC55_12680 IPR011335 Restriction endonuclease type II-like LLC55_12680 IPR011604 Exonuclease, phage-type/RecB, C-terminal LLC55_12680 IPR014016 UvrD-like helicase, ATP-binding domain LLC55_12685 IPR013986 DExx box DNA helicase domain superfamily LLC55_12685 IPR041500 RecC, C-terminal LLC55_12685 IPR011335 Restriction endonuclease type II-like LLC55_12685 IPR006697 RecBCD enzyme subunit RecC LLC55_12685 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12700 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12740 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily LLC55_12740 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone LLC55_12740 IPR018152 Superoxide dismutase, copper/zinc, binding site LLC55_12740 IPR001424 Superoxide dismutase, copper/zinc binding domain LLC55_12745 IPR018152 Superoxide dismutase, copper/zinc, binding site LLC55_12745 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily LLC55_12745 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone LLC55_12745 IPR001424 Superoxide dismutase, copper/zinc binding domain LLC55_12750 IPR002197 DNA binding HTH domain, Fis-type LLC55_12750 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12750 IPR011006 CheY-like superfamily LLC55_12750 IPR001789 Signal transduction response regulator, receiver domain LLC55_12750 IPR002078 RNA polymerase sigma factor 54 interaction domain LLC55_12750 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LLC55_12750 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LLC55_12750 IPR009057 Homeobox-like domain superfamily LLC55_12750 IPR025944 Sigma-54 interaction domain, conserved site LLC55_12750 IPR003593 AAA+ ATPase domain LLC55_12750 IPR010114 DNA-binding transcriptional regulator NtrC LLC55_12755 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_12755 IPR013767 PAS fold LLC55_12755 IPR035965 PAS domain superfamily LLC55_12755 IPR000014 PAS domain LLC55_12755 IPR005467 Histidine kinase domain LLC55_12755 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_12755 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_12755 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_12755 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_12760 IPR024041 Ammonium transporter AmtB-like domain LLC55_12760 IPR029020 Ammonium/urea transporter LLC55_12760 IPR001905 Ammonium transporter LLC55_12760 IPR018047 Ammonium transporter, conserved site LLC55_12765 IPR002187 Nitrogen regulatory protein PII LLC55_12765 IPR011322 Nitrogen regulatory PII-like, alpha/beta LLC55_12765 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LLC55_12765 IPR017918 Nitrogen regulatory protein PII, conserved site LLC55_12765 IPR002332 Nitrogen regulatory protein P-II, urydylation site LLC55_12770 IPR027302 Glutamine synthetase, N-terminal conserved site LLC55_12770 IPR001637 Glutamine synthetase class-I, adenylation site LLC55_12770 IPR004809 Glutamine synthetase type I LLC55_12770 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LLC55_12770 IPR008146 Glutamine synthetase, catalytic domain LLC55_12770 IPR036651 Glutamine synthetase, N-terminal domain superfamily LLC55_12770 IPR008147 Glutamine synthetase, beta-Grasp domain LLC55_12770 IPR027303 Glutamine synthetase, glycine-rich site LLC55_12775 IPR003824 Undecaprenyl-diphosphatase UppP LLC55_12810 IPR006683 Thioesterase domain LLC55_12810 IPR029069 HotDog domain superfamily LLC55_12810 IPR003736 Phenylacetic acid degradation-related domain LLC55_12815 IPR025202 Phospholipase D-like domain LLC55_12815 IPR001736 Phospholipase D/Transphosphatidylase LLC55_12825 IPR013078 Histidine phosphatase superfamily, clade-1 LLC55_12825 IPR029033 Histidine phosphatase superfamily LLC55_12830 IPR034904 Fe-S cluster assembly domain superfamily LLC55_12830 IPR002744 MIP18 family-like LLC55_12830 IPR019591 Mrp/NBP35 ATP-binding protein LLC55_12830 IPR000808 Mrp, conserved site LLC55_12830 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12830 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 LLC55_12850 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_12850 IPR017507 Transcription regulator, HipB-like LLC55_12850 IPR001387 Cro/C1-type helix-turn-helix domain LLC55_12855 IPR017508 HipA, N-terminal subdomain 1 LLC55_12855 IPR012893 HipA-like, C-terminal LLC55_12860 IPR017804 Methyltransferase EgtD-like LLC55_12860 IPR019257 Histidine-specific methyltransferase, SAM-dependent LLC55_12860 IPR032888 Histidine N-alpha-methyltransferase, Actinobacteria-type LLC55_12860 IPR035094 Histidine N-alpha-methyltransferase LLC55_12860 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_12865 IPR034660 DinB/YfiT-like putative metalloenzymes LLC55_12865 IPR024775 DinB-like domain LLC55_12865 IPR016187 C-type lectin fold LLC55_12865 IPR017806 Ergothioneine biosynthesis protein EgtB LLC55_12865 IPR032890 Hercynine oxygenase, Actinobacteria LLC55_12865 IPR005532 Sulfatase-modifying factor enzyme LLC55_12865 IPR042095 Sulfatase-modifying factor enzyme superfamily LLC55_12875 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_12875 IPR035906 MetI-like superfamily LLC55_12880 IPR000644 CBS domain LLC55_12880 IPR005892 Glycine betaine transport ATP-binding subunit LLC55_12880 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12880 IPR003439 ABC transporter-like LLC55_12880 IPR003593 AAA+ ATPase domain LLC55_12880 IPR017871 ABC transporter, conserved site LLC55_12895 IPR003593 AAA+ ATPase domain LLC55_12895 IPR003439 ABC transporter-like LLC55_12895 IPR017871 ABC transporter, conserved site LLC55_12895 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12905 IPR001423 Lysophospholipase patatin, conserved site LLC55_12905 IPR002641 Patatin-like phospholipase domain LLC55_12905 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LLC55_12920 IPR008490 Transposase InsH, N-terminal LLC55_12920 IPR002559 Transposase, IS4-like LLC55_12945 IPR023210 NADP-dependent oxidoreductase domain LLC55_12945 IPR020471 Aldo/keto reductase LLC55_12945 IPR018170 Aldo/keto reductase, conserved site LLC55_12945 IPR036812 NADP-dependent oxidoreductase domain superfamily LLC55_12950 IPR041694 Oxidoreductase, N-terminal domain LLC55_12950 IPR011032 GroES-like superfamily LLC55_12950 IPR036291 NAD(P)-binding domain superfamily LLC55_12950 IPR020843 Polyketide synthase, enoylreductase domain LLC55_12950 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_12955 IPR023210 NADP-dependent oxidoreductase domain LLC55_12955 IPR036812 NADP-dependent oxidoreductase domain superfamily LLC55_12965 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_12965 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LLC55_12965 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LLC55_12965 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LLC55_12965 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_12975 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal LLC55_12975 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_12975 IPR007502 Helicase-associated domain LLC55_12975 IPR011545 DEAD/DEAH box helicase domain LLC55_12975 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_12975 IPR001650 Helicase, C-terminal LLC55_12975 IPR010225 ATP-dependent helicase HrpB LLC55_12980 IPR009921 Domain of unknown function DUF1456 LLC55_12985 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal LLC55_12985 IPR034610 L-fuconate dehydratase LLC55_12985 IPR029065 Enolase C-terminal domain-like LLC55_12985 IPR029017 Enolase-like, N-terminal LLC55_12985 IPR036849 Enolase-like, C-terminal domain superfamily LLC55_12985 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain LLC55_12990 IPR011234 Fumarylacetoacetase-like, C-terminal LLC55_12990 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily LLC55_12995 IPR036291 NAD(P)-binding domain superfamily LLC55_12995 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_12995 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_13005 IPR023210 NADP-dependent oxidoreductase domain LLC55_13005 IPR036812 NADP-dependent oxidoreductase domain superfamily LLC55_13035 IPR011006 CheY-like superfamily LLC55_13035 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_13035 IPR001789 Signal transduction response regulator, receiver domain LLC55_13035 IPR000792 Transcription regulator LuxR, C-terminal LLC55_13040 IPR020845 AMP-binding, conserved site LLC55_13040 IPR000873 AMP-dependent synthetase/ligase LLC55_13040 IPR042099 AMP-dependent synthetase-like superfamily LLC55_13040 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain LLC55_13040 IPR025110 AMP-binding enzyme, C-terminal domain LLC55_13040 IPR011904 Acetate-CoA ligase LLC55_13050 IPR007436 Protein of unknown function DUF485 LLC55_13055 IPR001734 Sodium/solute symporter LLC55_13055 IPR018212 Sodium/solute symporter, conserved site LLC55_13055 IPR038377 Sodium/glucose symporter superfamily LLC55_13055 IPR014083 Cation/acetate symporter ActP LLC55_13070 IPR037493 Exodeoxyribonuclease III-like LLC55_13070 IPR036691 Endonuclease/exonuclease/phosphatase superfamily LLC55_13070 IPR020848 AP endonuclease 1, conserved site LLC55_13070 IPR020847 AP endonuclease 1, binding site LLC55_13070 IPR004808 AP endonuclease 1 LLC55_13070 IPR005135 Endonuclease/exonuclease/phosphatase LLC55_13080 IPR007341 Transglycosylase-associated protein LLC55_13085 IPR037143 4'-phosphopantetheinyl transferase domain superfamily LLC55_13085 IPR008278 4'-phosphopantetheinyl transferase domain LLC55_13085 IPR004568 Phosphopantetheine-protein transferase domain LLC55_13090 IPR008963 Purple acid phosphatase-like, N-terminal LLC55_13090 IPR018946 Alkaline phosphatase D-related LLC55_13090 IPR038607 PhoD-like superfamily LLC55_13090 IPR032093 Phospholipase D, N-terminal LLC55_13090 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_13095 IPR018946 Alkaline phosphatase D-related LLC55_13095 IPR038607 PhoD-like superfamily LLC55_13095 IPR032093 Phospholipase D, N-terminal LLC55_13095 IPR008963 Purple acid phosphatase-like, N-terminal LLC55_13100 IPR003682 rRNA small subunit methyltransferase G LLC55_13100 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_13115 IPR034704 L28p-like LLC55_13115 IPR026569 Ribosomal protein L28/L24 LLC55_13115 IPR037147 Ribosomal protein L28/L24 superfamily LLC55_13115 IPR001383 Ribosomal protein L28 LLC55_13120 IPR001705 Ribosomal protein L33 LLC55_13120 IPR018264 Ribosomal protein L33, conserved site LLC55_13120 IPR011332 Zinc-binding ribosomal protein LLC55_13120 IPR038584 Ribosomal protein L33 superfamily LLC55_13140 IPR007400 PrpF protein LLC55_13145 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein LLC55_13145 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase LLC55_13145 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily LLC55_13150 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_13150 IPR000847 Transcription regulator HTH, LysR LLC55_13150 IPR005119 LysR, substrate-binding LLC55_13150 IPR036390 Winged helix DNA-binding domain superfamily LLC55_13155 IPR022924 Cardiolipin synthase LLC55_13155 IPR001736 Phospholipase D/Transphosphatidylase LLC55_13155 IPR025202 Phospholipase D-like domain LLC55_13155 IPR027379 Cardiolipin synthase N-terminal LLC55_13155 IPR030874 Cardiolipin synthase, Firmicutes-type LLC55_13170 IPR034739 UvrD/AddA helicase, N-terminal LLC55_13170 IPR014017 UvrD-like DNA helicase, C-terminal LLC55_13170 IPR005753 DNA helicase, ATP-dependent, UvrD type LLC55_13170 IPR013986 DExx box DNA helicase domain superfamily LLC55_13170 IPR014016 UvrD-like helicase, ATP-binding domain LLC55_13170 IPR000212 DNA helicase, UvrD/REP type LLC55_13170 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_13185 IPR002293 Amino acid/polyamine transporter I LLC55_13185 IPR004758 Amino acid transporter LLC55_13195 IPR003798 DNA recombination RmuC LLC55_13205 IPR033674 Thioredoxin/glutathione peroxidase BtuE LLC55_13205 IPR000889 Glutathione peroxidase LLC55_13205 IPR029759 Glutathione peroxidase active site LLC55_13205 IPR029760 Glutathione peroxidase conserved site LLC55_13205 IPR036249 Thioredoxin-like superfamily LLC55_13220 IPR040086 Protein MJ0683-like LLC55_13220 IPR007197 Radical SAM LLC55_13220 IPR013785 Aldolase-type TIM barrel LLC55_13220 IPR006638 Elp3/MiaB/NifB LLC55_13230 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) LLC55_13230 IPR042117 OMPP1/FadL/TodX superfamily LLC55_13245 IPR023756 Glyoxylate/hydroxypyruvate reductase B LLC55_13245 IPR036291 NAD(P)-binding domain superfamily LLC55_13245 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LLC55_13245 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site LLC55_13245 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLC55_13255 IPR004447 C-terminal-processing peptidase S41A LLC55_13255 IPR036034 PDZ superfamily LLC55_13255 IPR001478 PDZ domain LLC55_13255 IPR029045 ClpP/crotonase-like domain superfamily LLC55_13255 IPR005151 Tail specific protease LLC55_13260 IPR016047 Peptidase M23 LLC55_13260 IPR011055 Duplicated hybrid motif LLC55_13270 IPR007484 Peptidase M28 LLC55_13315 IPR018078 DNA-binding, RecF, conserved site LLC55_13315 IPR042174 DNA-binding RecF, domain 2 LLC55_13315 IPR003395 RecF/RecN/SMC, N-terminal LLC55_13315 IPR001238 DNA-binding, RecF LLC55_13315 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_13320 IPR020602 GTP cyclohydrolase I domain LLC55_13320 IPR018234 GTP cyclohydrolase I, conserved site LLC55_13320 IPR001474 GTP cyclohydrolase I LLC55_13350 IPR004736 MFS transporter, metabolite:H symporter LLC55_13350 IPR005828 Major facilitator, sugar transporter-like LLC55_13350 IPR020846 Major facilitator superfamily domain LLC55_13350 IPR005829 Sugar transporter, conserved site LLC55_13350 IPR036259 MFS transporter superfamily LLC55_13445 IPR004381 Glycerate kinase LLC55_13445 IPR018197 Glycerate kinase, restriction-enzyme-like fold LLC55_13445 IPR018193 Glycerate kinase, flavodoxin-like fold LLC55_13445 IPR036129 Glycerate kinase superfamily LLC55_13450 IPR011701 Major facilitator superfamily LLC55_13450 IPR020846 Major facilitator superfamily domain LLC55_13450 IPR036259 MFS transporter superfamily LLC55_13465 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_13465 IPR019614 S-adenosylmethionine-dependent methyltransferase LLC55_13465 IPR015947 PUA-like superfamily LLC55_13465 IPR041532 RlmI, PUA-like domain LLC55_13465 IPR002478 PUA domain LLC55_13465 IPR023542 rRNA large subunit methyltransferase I LLC55_13465 IPR036974 PUA domain superfamily LLC55_13470 IPR022369 Integral membrane protein TerC, riboswitch-linked LLC55_13470 IPR005496 Integral membrane protein TerC LLC55_13475 IPR035952 Rhomboid-like superfamily LLC55_13475 IPR022764 Peptidase S54, rhomboid domain LLC55_13480 IPR030395 Glycerophosphodiester phosphodiesterase domain LLC55_13480 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily LLC55_13490 IPR001011 Acid phosphatase, class A, bacterial LLC55_13490 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily LLC55_13490 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase LLC55_13490 IPR018296 Acid phosphatase, class A, bacterial, conserved site LLC55_13495 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_13495 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 LLC55_13495 IPR005225 Small GTP-binding protein domain LLC55_13495 IPR025867 MnmE, helical domain LLC55_13495 IPR004520 tRNA modification GTPase MnmE LLC55_13495 IPR027368 tRNA modification GTPase MnmE domain 2 LLC55_13495 IPR018948 GTP-binding protein TrmE, N-terminal LLC55_13495 IPR031168 TrmE-type guanine nucleotide-binding domain LLC55_13495 IPR006073 GTP binding domain LLC55_13500 IPR026402 Chitooligosaccharide deacetylase NodB LLC55_13500 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel LLC55_13500 IPR002509 NodB homology domain LLC55_13505 IPR019998 Membrane insertase YidC LLC55_13505 IPR028055 Membrane insertase YidC/Oxa1, C-terminal LLC55_13505 IPR028053 Membrane insertase YidC, N-terminal LLC55_13505 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 LLC55_13505 IPR038210 Membrane insertase YidC, periplasmic domain LLC55_13505 IPR038221 YidC, periplasmic domain superfamily LLC55_13510 IPR020539 Ribonuclease P, conserved site LLC55_13510 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_13510 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_13510 IPR000100 Ribonuclease P LLC55_13515 IPR000271 Ribosomal protein L34 LLC55_13515 IPR020939 Ribosomal protein L34, conserved site LLC55_13530 IPR012340 Nucleic acid-binding, OB-fold LLC55_13530 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LLC55_13530 IPR002313 Lysine-tRNA ligase, class II LLC55_13530 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LLC55_13530 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal LLC55_13530 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_13535 IPR001789 Signal transduction response regulator, receiver domain LLC55_13535 IPR003607 HD/PDEase domain LLC55_13535 IPR037522 HD-GYP domain LLC55_13535 IPR011006 CheY-like superfamily LLC55_13540 IPR011006 CheY-like superfamily LLC55_13540 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_13540 IPR001789 Signal transduction response regulator, receiver domain LLC55_13540 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_13540 IPR036641 HPT domain superfamily LLC55_13540 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_13540 IPR005467 Histidine kinase domain LLC55_13540 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_13540 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_13540 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_13545 IPR014748 Enoyl-CoA hydratase, C-terminal LLC55_13545 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_13545 IPR029045 ClpP/crotonase-like domain superfamily LLC55_13545 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LLC55_13550 IPR042099 AMP-dependent synthetase-like superfamily LLC55_13550 IPR000873 AMP-dependent synthetase/ligase LLC55_13550 IPR020845 AMP-binding, conserved site LLC55_13550 IPR025110 AMP-binding enzyme, C-terminal domain LLC55_13560 IPR006249 Aconitase/Iron-responsive element-binding protein 2 LLC55_13560 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain LLC55_13560 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel LLC55_13560 IPR036008 Aconitase, iron-sulfur domain LLC55_13560 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain LLC55_13560 IPR018136 Aconitase family, 4Fe-4S cluster binding site LLC55_13560 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 LLC55_13575 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 LLC55_13575 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain LLC55_13575 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel LLC55_13575 IPR018136 Aconitase family, 4Fe-4S cluster binding site LLC55_13575 IPR036008 Aconitase, iron-sulfur domain LLC55_13575 IPR036288 Aconitase B, HEAT-like domain superfamily LLC55_13575 IPR015929 Aconitase B, swivel LLC55_13575 IPR015932 Aconitase, domain 2 LLC55_13575 IPR004406 Aconitase B LLC55_13575 IPR015933 Aconitase B, HEAT-like domain LLC55_13580 IPR029058 Alpha/Beta hydrolase fold LLC55_13580 IPR000073 Alpha/beta hydrolase fold-1 LLC55_13580 IPR019913 Pyrimidine utilisation protein RutD LLC55_13590 IPR029787 Nucleotide cyclase LLC55_13590 IPR000160 GGDEF domain LLC55_13590 IPR005330 MHYT domain LLC55_13590 IPR035919 EAL domain superfamily LLC55_13590 IPR001633 EAL domain LLC55_13595 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase LLC55_13595 IPR011006 CheY-like superfamily LLC55_13595 IPR035909 Methylesterase CheB, C-terminal LLC55_13595 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type LLC55_13595 IPR001789 Signal transduction response regulator, receiver domain LLC55_13600 IPR011324 Cytotoxic necrotizing factor-like, catalytic LLC55_13600 IPR005659 Chemoreceptor glutamine deamidase CheD LLC55_13600 IPR038592 CheD-like superfamily LLC55_13605 IPR026024 Chemotaxis protein methyltransferase CheR LLC55_13605 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal LLC55_13605 IPR000780 MCP methyltransferase, CheR-type LLC55_13605 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal LLC55_13605 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily LLC55_13605 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_13610 IPR003660 HAMP domain LLC55_13610 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13610 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13610 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13610 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13610 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13630 IPR002545 CheW-like domain LLC55_13630 IPR036061 CheW-like domain superfamily LLC55_13630 IPR039315 Chemotaxis protein CheW LLC55_13635 IPR009875 PilZ domain LLC55_13635 IPR012349 FMN-binding split barrel LLC55_13635 IPR023787 Type III secretion system flagellar brake protein YcgR LLC55_13635 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal LLC55_13645 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13645 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13645 IPR003660 HAMP domain LLC55_13645 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13645 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13645 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13650 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13650 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13650 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13650 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13650 IPR003660 HAMP domain LLC55_13650 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13655 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13655 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13655 IPR003660 HAMP domain LLC55_13655 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13655 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13655 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13660 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13660 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13660 IPR003660 HAMP domain LLC55_13660 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13660 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13660 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13670 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13670 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13670 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13670 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13670 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13670 IPR003660 HAMP domain LLC55_13680 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding LLC55_13680 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_13680 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily LLC55_13680 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site LLC55_13680 IPR004090 Chemotaxis methyl-accepting receptor LLC55_13680 IPR003660 HAMP domain LLC55_13705 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_13705 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_13705 IPR036641 HPT domain superfamily LLC55_13705 IPR005467 Histidine kinase domain LLC55_13705 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_13705 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_13705 IPR035891 CheY-binding domain of CheA LLC55_13705 IPR015162 CheY binding LLC55_13705 IPR002545 CheW-like domain LLC55_13705 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily LLC55_13705 IPR004105 Histidine kinase CheA-like, homodimeric domain LLC55_13705 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_13705 IPR036061 CheW-like domain superfamily LLC55_13710 IPR011006 CheY-like superfamily LLC55_13710 IPR001789 Signal transduction response regulator, receiver domain LLC55_13720 IPR039315 Chemotaxis protein CheW LLC55_13720 IPR036061 CheW-like domain superfamily LLC55_13720 IPR002545 CheW-like domain LLC55_13725 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_13725 IPR025669 AAA domain LLC55_13730 IPR006665 OmpA-like domain LLC55_13730 IPR036737 OmpA-like domain superfamily LLC55_13730 IPR025713 Motility protein B, N-terminal domain LLC55_13735 IPR002898 MotA/TolQ/ExbB proton channel LLC55_13735 IPR000540 Flagellar motor protein MotA, conserved site LLC55_13745 IPR030149 TonB-dependent siderophore receptor FcuA/FatA LLC55_13745 IPR012910 TonB-dependent receptor, plug domain LLC55_13745 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_13745 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_13745 IPR039423 TonB-dependent receptor-like LLC55_13745 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_13745 IPR010917 TonB-dependent receptor, conserved site LLC55_13745 IPR010105 TonB-dependent siderophore receptor LLC55_13745 IPR010916 TonB box, conserved site LLC55_13755 IPR019832 Manganese/iron superoxide dismutase, C-terminal LLC55_13755 IPR019831 Manganese/iron superoxide dismutase, N-terminal LLC55_13755 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily LLC55_13755 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily LLC55_13755 IPR001189 Manganese/iron superoxide dismutase LLC55_13755 IPR019833 Manganese/iron superoxide dismutase, binding site LLC55_13765 IPR010916 TonB box, conserved site LLC55_13765 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_13765 IPR039426 Vitamin B12 transporter BtuB-like LLC55_13765 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_13765 IPR012910 TonB-dependent receptor, plug domain LLC55_13765 IPR011276 TonB-dependent haem/haemoglobin receptor LLC55_13765 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor LLC55_13765 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_13790 IPR002559 Transposase, IS4-like LLC55_13790 IPR008490 Transposase InsH, N-terminal LLC55_13835 IPR006531 Gp5 N-terminal LLC55_13835 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_13835 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_13835 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_13855 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_13855 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_13855 IPR006531 Gp5 N-terminal LLC55_13855 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_13875 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_13875 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_13875 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_13875 IPR010609 Gp5, C-terminal LLC55_13875 IPR006531 Gp5 N-terminal LLC55_13925 IPR002559 Transposase, IS4-like LLC55_13925 IPR008490 Transposase InsH, N-terminal LLC55_13940 IPR036095 PTS system IIB component-like superfamily LLC55_13940 IPR013011 Phosphotransferase system, EIIB component, type 2 LLC55_13940 IPR003501 Phosphotransferase system, EIIB component, type 2/3 LLC55_13940 IPR013014 Phosphotransferase system, EIIC component, type 2 LLC55_13940 IPR003353 Phosphotransferase system, fructose-specific IIB subunit LLC55_13940 IPR006327 Phosphotransferase system, fructose IIC component LLC55_13945 IPR017583 Tagatose/fructose phosphokinase LLC55_13945 IPR011611 Carbohydrate kinase PfkB LLC55_13945 IPR029056 Ribokinase-like LLC55_13945 IPR022463 Fructose 1-phosphate kinase LLC55_13945 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LLC55_13950 IPR040442 Pyruvate kinase-like domain superfamily LLC55_13950 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_13950 IPR036618 PtsI, HPr-binding domain superfamily LLC55_13950 IPR002114 Phosphotransferase system, HPr serine phosphorylation site LLC55_13950 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site LLC55_13950 IPR008731 Phosphotransferase system, enzyme I N-terminal LLC55_13950 IPR002178 PTS EIIA type-2 domain LLC55_13950 IPR006318 Phosphotransferase system, enzyme I-like LLC55_13950 IPR036637 Phosphohistidine domain superfamily LLC55_13950 IPR023151 PEP-utilising enzyme, conserved site LLC55_13950 IPR000121 PEP-utilising enzyme, C-terminal LLC55_13950 IPR018274 PEP-utilising enzyme, active site LLC55_13950 IPR008279 PEP-utilising enzyme, mobile domain LLC55_13950 IPR035895 HPr-like superfamily LLC55_13950 IPR000032 Phosphocarrier protein HPr-like LLC55_13950 IPR016152 Phosphotransferase/anion transporter LLC55_13955 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_13955 IPR012310 DNA ligase, ATP-dependent, central LLC55_13955 IPR028082 Periplasmic binding protein-like I LLC55_13955 IPR000843 LacI-type HTH domain LLC55_13975 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 LLC55_13975 IPR001036 Acriflavin resistance protein LLC55_13975 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LLC55_13980 IPR006143 RND efflux pump, membrane fusion protein LLC55_13980 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_13990 IPR036291 NAD(P)-binding domain superfamily LLC55_13990 IPR028971 NAD-glutamate dehydrogenase LLC55_13990 IPR007780 NAD-glutamate dehydrogenase, bacteria LLC55_13995 IPR002559 Transposase, IS4-like LLC55_13995 IPR008490 Transposase InsH, N-terminal LLC55_14000 IPR037522 HD-GYP domain LLC55_14000 IPR001789 Signal transduction response regulator, receiver domain LLC55_14000 IPR011006 CheY-like superfamily LLC55_14000 IPR003607 HD/PDEase domain LLC55_14005 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_14005 IPR011006 CheY-like superfamily LLC55_14005 IPR001789 Signal transduction response regulator, receiver domain LLC55_14005 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_14005 IPR036641 HPT domain superfamily LLC55_14005 IPR019247 Histidine kinase BarA, N-terminal LLC55_14005 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_14005 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_14005 IPR005467 Histidine kinase domain LLC55_14005 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_14005 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_14005 IPR003660 HAMP domain LLC55_14010 IPR007383 Protein of unknown function DUF445 LLC55_14020 IPR003439 ABC transporter-like LLC55_14020 IPR003593 AAA+ ATPase domain LLC55_14020 IPR017871 ABC transporter, conserved site LLC55_14020 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14020 IPR017882 Zinc import ATP-binding protein ZnuC LLC55_14025 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_14025 IPR005814 Aminotransferase class-III LLC55_14025 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_14025 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_14030 IPR036259 MFS transporter superfamily LLC55_14030 IPR020846 Major facilitator superfamily domain LLC55_14030 IPR011701 Major facilitator superfamily LLC55_14035 IPR016193 Cytidine deaminase-like LLC55_14035 IPR003786 Sulfur carrier protein FdhD LLC55_14040 IPR009010 Aspartate decarboxylase-like domain superfamily LLC55_14040 IPR006656 Molybdopterin oxidoreductase LLC55_14040 IPR010046 Oxidoreductase alpha (molybdopterin) subunit LLC55_14040 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain LLC55_14040 IPR037951 YdeP-like, MopB domain LLC55_14050 IPR036259 MFS transporter superfamily LLC55_14050 IPR020846 Major facilitator superfamily domain LLC55_14050 IPR011701 Major facilitator superfamily LLC55_14050 IPR005828 Major facilitator, sugar transporter-like LLC55_14050 IPR005829 Sugar transporter, conserved site LLC55_14050 IPR004736 MFS transporter, metabolite:H symporter LLC55_14055 IPR011006 CheY-like superfamily LLC55_14055 IPR000160 GGDEF domain LLC55_14055 IPR029787 Nucleotide cyclase LLC55_14055 IPR001789 Signal transduction response regulator, receiver domain LLC55_14060 IPR006076 FAD dependent oxidoreductase LLC55_14060 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_14065 IPR036651 Glutamine synthetase, N-terminal domain superfamily LLC55_14065 IPR008146 Glutamine synthetase, catalytic domain LLC55_14065 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LLC55_14065 IPR027303 Glutamine synthetase, glycine-rich site LLC55_14075 IPR008146 Glutamine synthetase, catalytic domain LLC55_14075 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain LLC55_14075 IPR036651 Glutamine synthetase, N-terminal domain superfamily LLC55_14085 IPR039562 Membrane fusion protein, biotin-lipoyl like domain LLC55_14090 IPR036259 MFS transporter superfamily LLC55_14090 IPR020846 Major facilitator superfamily domain LLC55_14090 IPR011701 Major facilitator superfamily LLC55_14090 IPR004638 Drug resistance transporter EmrB-like LLC55_14095 IPR003423 Outer membrane efflux protein LLC55_14095 IPR010131 RND efflux system, outer membrane lipoprotein, NodT LLC55_14100 IPR017871 ABC transporter, conserved site LLC55_14100 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit LLC55_14100 IPR013611 Transport-associated OB, type 2 LLC55_14100 IPR003439 ABC transporter-like LLC55_14100 IPR003593 AAA+ ATPase domain LLC55_14100 IPR008995 Molybdate/tungstate binding, C-terminal LLC55_14100 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14120 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_14120 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_14120 IPR016160 Aldehyde dehydrogenase, cysteine active site LLC55_14120 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_14120 IPR015590 Aldehyde dehydrogenase domain LLC55_14135 IPR000644 CBS domain LLC55_14135 IPR036318 FAD-binding, type PCMH-like superfamily LLC55_14135 IPR016169 FAD-binding, type PCMH, subdomain 2 LLC55_14135 IPR005170 Transporter-associated domain LLC55_14145 IPR023091 Metalloprotease catalytic domain superfamily, predicted LLC55_14145 IPR002036 Endoribonuclease YbeY LLC55_14145 IPR020549 Endoribonuclease YbeY, conserved site LLC55_14155 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14155 IPR003714 PhoH-like protein LLC55_14160 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB LLC55_14160 IPR038135 Methylthiotransferase, N-terminal domain superfamily LLC55_14160 IPR013848 Methylthiotransferase, N-terminal LLC55_14160 IPR002792 TRAM domain LLC55_14160 IPR020612 Methylthiotransferase, conserved site LLC55_14160 IPR005839 Methylthiotransferase LLC55_14160 IPR006638 Elp3/MiaB/NifB LLC55_14160 IPR007197 Radical SAM LLC55_14160 IPR023404 Radical SAM, alpha/beta horseshoe LLC55_14180 IPR008258 Transglycosylase SLT domain 1 LLC55_14180 IPR000189 Prokaryotic transglycosylase, active site LLC55_14180 IPR023346 Lysozyme-like domain superfamily LLC55_14185 IPR005805 Rieske iron-sulphur protein, C-terminal LLC55_14185 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal LLC55_14185 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit LLC55_14185 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily LLC55_14185 IPR017941 Rieske [2Fe-2S] iron-sulphur domain LLC55_14185 IPR014349 Rieske iron-sulphur protein LLC55_14190 IPR005798 Cytochrome b/b6, C-terminal LLC55_14190 IPR036150 Cytochrome b/b6, C-terminal domain superfamily LLC55_14190 IPR005797 Cytochrome b/b6, N-terminal LLC55_14190 IPR027387 Cytochrome b/b6-like domain superfamily LLC55_14190 IPR030689 Cytochrome b LLC55_14190 IPR016174 Di-haem cytochrome, transmembrane LLC55_14195 IPR009056 Cytochrome c-like domain LLC55_14195 IPR036909 Cytochrome c-like domain superfamily LLC55_14195 IPR002326 Cytochrome c1 LLC55_14200 IPR010987 Glutathione S-transferase, C-terminal-like LLC55_14200 IPR036282 Glutathione S-transferase, C-terminal domain superfamily LLC55_14200 IPR040079 Glutathione Transferase family LLC55_14200 IPR004046 Glutathione S-transferase, C-terminal LLC55_14200 IPR034341 Stringent starvation protein A, N-terminal LLC55_14200 IPR036249 Thioredoxin-like superfamily LLC55_14200 IPR004045 Glutathione S-transferase, N-terminal LLC55_14205 IPR036760 SspB-like superfamily LLC55_14205 IPR007481 Stringent starvation protein B LLC55_14230 IPR036995 Methylpurine-DNA glycosylase superfamily LLC55_14230 IPR003180 Methylpurine-DNA glycosylase LLC55_14230 IPR011034 Formyl transferase-like, C-terminal domain superfamily LLC55_14240 IPR001207 Transposase, mutator type LLC55_14255 IPR002872 Proline dehydrogenase domain LLC55_14255 IPR024082 Proline dehydrogenase PutA, domain II LLC55_14255 IPR024089 Proline dehydrogenase PutA, domain I/II LLC55_14255 IPR024090 Proline dehydrogenase PutA, domain I LLC55_14255 IPR016160 Aldehyde dehydrogenase, cysteine active site LLC55_14255 IPR013321 Arc-type ribbon-helix-helix LLC55_14255 IPR029041 FAD-linked oxidoreductase-like LLC55_14255 IPR025703 Bifunctional protein PutA LLC55_14255 IPR010985 Ribbon-helix-helix LLC55_14255 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LLC55_14255 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_14255 IPR015590 Aldehyde dehydrogenase domain LLC55_14255 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain LLC55_14255 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 LLC55_14255 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_14255 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_14305 IPR002562 3'-5' exonuclease domain LLC55_14305 IPR010997 HRDC-like superfamily LLC55_14305 IPR002121 HRDC domain LLC55_14305 IPR006292 Ribonuclease D LLC55_14305 IPR012337 Ribonuclease H-like superfamily LLC55_14305 IPR036397 Ribonuclease H superfamily LLC55_14315 IPR016187 C-type lectin fold LLC55_14315 IPR005532 Sulfatase-modifying factor enzyme LLC55_14315 IPR042095 Sulfatase-modifying factor enzyme superfamily LLC55_14330 IPR025824 OB-fold nucleic acid binding domain LLC55_14330 IPR003753 Exonuclease VII, large subunit LLC55_14330 IPR020579 Exonuclease VII, large subunit, C-terminal LLC55_14340 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_14340 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LLC55_14340 IPR013542 Domain of unknown function DUF1730 LLC55_14340 IPR004453 Epoxyqueuosine reductase QueG LLC55_14345 IPR004443 YjeF N-terminal domain LLC55_14345 IPR029056 Ribokinase-like LLC55_14345 IPR036652 YjeF N-terminal domain superfamily LLC55_14345 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase LLC55_14345 IPR017953 Carbohydrate kinase, predicted, conserved site LLC55_14345 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr LLC55_14350 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14350 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE LLC55_14355 IPR021731 AMIN domain LLC55_14355 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain LLC55_14355 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_14360 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_14360 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_14360 IPR037198 MutL, C-terminal domain superfamily LLC55_14360 IPR042121 MutL, C-terminal domain, regulatory subdomain LLC55_14360 IPR042120 MutL, C-terminal domain, dimerisation subdomain LLC55_14360 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_14360 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms LLC55_14360 IPR013507 DNA mismatch repair protein, S5 domain 2-like LLC55_14360 IPR002099 DNA mismatch repair protein family, N-terminal LLC55_14360 IPR020667 DNA mismatch repair protein, MutL LLC55_14360 IPR014762 DNA mismatch repair, conserved site LLC55_14360 IPR014790 MutL, C-terminal, dimerisation LLC55_14375 IPR012909 PHA accumulation regulator DNA-binding, N-terminal LLC55_14375 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR LLC55_14375 IPR007897 PHB accumulation regulatory LLC55_14380 IPR036291 NAD(P)-binding domain superfamily LLC55_14380 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_14380 IPR011283 Acetoacetyl-CoA reductase LLC55_14380 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_14385 IPR022380 Glutamyl-Q tRNA(Asp) synthetase LLC55_14385 IPR000924 Glutamyl/glutaminyl-tRNA synthetase LLC55_14385 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain LLC55_14385 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_14390 IPR022919 Peptidase M48, protease HtpX, putative LLC55_14390 IPR001915 Peptidase M48 LLC55_14395 IPR011006 CheY-like superfamily LLC55_14395 IPR001633 EAL domain LLC55_14395 IPR035919 EAL domain superfamily LLC55_14395 IPR000160 GGDEF domain LLC55_14395 IPR029787 Nucleotide cyclase LLC55_14395 IPR001789 Signal transduction response regulator, receiver domain LLC55_14400 IPR023166 HI0933-like insert domain superfamily LLC55_14400 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_14400 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like LLC55_14405 IPR038590 YaeQ superfamily LLC55_14405 IPR009822 YaeQ LLC55_14405 IPR011335 Restriction endonuclease type II-like LLC55_14410 IPR003791 Protein of unknown function UPF0178 LLC55_14415 IPR012156 Cold shock, CspA LLC55_14415 IPR012340 Nucleic acid-binding, OB-fold LLC55_14415 IPR002059 Cold-shock protein, DNA-binding LLC55_14415 IPR019844 Cold-shock (CSD) domain LLC55_14415 IPR011129 Cold shock domain LLC55_14420 IPR004046 Glutathione S-transferase, C-terminal LLC55_14420 IPR004045 Glutathione S-transferase, N-terminal LLC55_14420 IPR040079 Glutathione Transferase family LLC55_14420 IPR010987 Glutathione S-transferase, C-terminal-like LLC55_14420 IPR036282 Glutathione S-transferase, C-terminal domain superfamily LLC55_14420 IPR005955 Glutathione S-transferases, class Zeta LLC55_14420 IPR034330 Glutathione S-transferases, class Zeta , C-terminal LLC55_14420 IPR034333 Glutathione S-transferases, class Zeta , N-terminal LLC55_14420 IPR036249 Thioredoxin-like superfamily LLC55_14430 IPR003846 Protein adenylyltransferase SelO LLC55_14435 IPR000836 Phosphoribosyltransferase domain LLC55_14435 IPR005764 Adenine phosphoribosyl transferase LLC55_14435 IPR029057 Phosphoribosyltransferase-like LLC55_14440 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain LLC55_14440 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14440 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily LLC55_14440 IPR001650 Helicase, C-terminal LLC55_14440 IPR014014 RNA helicase, DEAD-box type, Q motif LLC55_14440 IPR028619 ATP-dependent RNA helicase DbpA LLC55_14440 IPR011545 DEAD/DEAH box helicase domain LLC55_14440 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site LLC55_14440 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_14445 IPR003593 AAA+ ATPase domain LLC55_14445 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily LLC55_14445 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14445 IPR017871 ABC transporter, conserved site LLC55_14445 IPR032781 ABC-transporter extension domain LLC55_14445 IPR032524 ABC transporter Uup, C-terminal LLC55_14445 IPR003439 ABC transporter-like LLC55_14460 IPR000026 Guanine-specific ribonuclease N1/T1/U2 LLC55_14460 IPR016191 Ribonuclease/ribotoxin LLC55_14465 IPR001189 Manganese/iron superoxide dismutase LLC55_14465 IPR019833 Manganese/iron superoxide dismutase, binding site LLC55_14465 IPR019832 Manganese/iron superoxide dismutase, C-terminal LLC55_14465 IPR019831 Manganese/iron superoxide dismutase, N-terminal LLC55_14465 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily LLC55_14465 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily LLC55_14470 IPR022337 Inositol monophosphatase, SuhB LLC55_14470 IPR033942 Inositol monophosphatase LLC55_14470 IPR000760 Inositol monophosphatase-like LLC55_14470 IPR020550 Inositol monophosphatase, conserved site LLC55_14470 IPR020583 Inositol monophosphatase, metal-binding site LLC55_14475 IPR029028 Alpha/beta knot methyltransferases LLC55_14475 IPR004384 RNA methyltransferase TrmJ/LasT LLC55_14475 IPR001537 tRNA/rRNA methyltransferase, SpoU type LLC55_14475 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_14485 IPR000160 GGDEF domain LLC55_14485 IPR001633 EAL domain LLC55_14485 IPR035919 EAL domain superfamily LLC55_14485 IPR035965 PAS domain superfamily LLC55_14485 IPR000014 PAS domain LLC55_14485 IPR029787 Nucleotide cyclase LLC55_14485 IPR005330 MHYT domain LLC55_14490 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase LLC55_14490 IPR022462 Lysine-2,3-aminomutase-like LLC55_14490 IPR013785 Aldolase-type TIM barrel LLC55_14490 IPR007197 Radical SAM LLC55_14495 IPR014722 Ribosomal protein L2, domain 2 LLC55_14495 IPR011768 Translation elongation factor P LLC55_14495 IPR020599 Translation elongation factor P/YeiP LLC55_14495 IPR013852 Translation elongation factor P/YeiP, conserved site LLC55_14495 IPR008991 Translation protein SH3-like domain superfamily LLC55_14495 IPR013185 Translation elongation factor, KOW-like LLC55_14495 IPR015365 Elongation factor P, C-terminal LLC55_14495 IPR012340 Nucleic acid-binding, OB-fold LLC55_14495 IPR001059 Translation elongation factor P/YeiP, central LLC55_14505 IPR006680 Amidohydrolase-related LLC55_14505 IPR023512 Deaminase MtaD/DadD LLC55_14505 IPR011059 Metal-dependent hydrolase, composite domain superfamily LLC55_14505 IPR032466 Metal-dependent hydrolase LLC55_14510 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_14510 IPR010233 Ubiquinone biosynthesis O-methyltransferase LLC55_14515 IPR023198 Phosphoglycolate phosphatase-like, domain 2 LLC55_14515 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic LLC55_14515 IPR023214 HAD superfamily LLC55_14515 IPR037512 Phosphoglycolate phosphatase, prokaryotic LLC55_14515 IPR006439 HAD hydrolase, subfamily IA LLC55_14515 IPR036412 HAD-like superfamily LLC55_14515 IPR041492 Haloacid dehalogenase-like hydrolase LLC55_14525 IPR011050 Pectin lyase fold/virulence factor LLC55_14525 IPR000743 Glycoside hydrolase, family 28 LLC55_14525 IPR012334 Pectin lyase fold LLC55_14535 IPR012334 Pectin lyase fold LLC55_14535 IPR011050 Pectin lyase fold/virulence factor LLC55_14535 IPR033131 Pectinesterase, Asp active site LLC55_14535 IPR000070 Pectinesterase, catalytic LLC55_14545 IPR008490 Transposase InsH, N-terminal LLC55_14545 IPR002559 Transposase, IS4-like LLC55_14575 IPR003646 SH3-like domain, bacterial-type LLC55_14575 IPR016047 Peptidase M23 LLC55_14575 IPR011055 Duplicated hybrid motif LLC55_14580 IPR032466 Metal-dependent hydrolase LLC55_14580 IPR002195 Dihydroorotase, conserved site LLC55_14580 IPR004722 Dihydroorotase LLC55_14580 IPR006680 Amidohydrolase-related LLC55_14580 IPR011059 Metal-dependent hydrolase, composite domain superfamily LLC55_14585 IPR002696 Putative membrane protein insertion efficiency factor LLC55_14590 IPR012784 RNA polymerase-binding transcription factor DksA LLC55_14590 IPR037187 DksA, N-terminal domain superfamily LLC55_14590 IPR000962 Zinc finger, DksA/TraR C4-type LLC55_14590 IPR020458 Zinc finger, DksA/TraR C4-type conserved site LLC55_14605 IPR023939 Cysteine desulfuration protein SufE LLC55_14605 IPR003808 Fe-S metabolism associated domain, SufE-like LLC55_14610 IPR032678 tRNA synthetases class I, catalytic domain LLC55_14610 IPR015803 Cysteine-tRNA ligase LLC55_14610 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_14610 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LLC55_14610 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase LLC55_14610 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR LLC55_14620 IPR006130 Aspartate/ornithine carbamoyltransferase LLC55_14620 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding LLC55_14620 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain LLC55_14620 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily LLC55_14625 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_14625 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body LLC55_14625 IPR018223 Argininosuccinate synthase, conserved site LLC55_14625 IPR023434 Argininosuccinate synthase, type 1 subfamily LLC55_14625 IPR001518 Argininosuccinate synthase LLC55_14635 IPR036264 Bacterial exopeptidase dimerisation domain LLC55_14635 IPR002933 Peptidase M20 LLC55_14635 IPR011650 Peptidase M20, dimerisation domain LLC55_14635 IPR010169 Acetylornithine deacetylase ArgE LLC55_14640 IPR004662 Acetylglutamate kinase family LLC55_14640 IPR016181 Acyl-CoA N-acyltransferase LLC55_14640 IPR011242 Acetylglutamate kinase ArgB, GNAT domain-containing LLC55_14640 IPR001048 Aspartate/glutamate/uridylate kinase LLC55_14640 IPR041734 N-Acetyl-L-glutamate kinase, fungal-type LLC55_14640 IPR006855 Vertebrate-like NAGS Gcn5-related N-acetyltransferase (GNAT) domain LLC55_14640 IPR036393 Acetylglutamate kinase-like superfamily LLC55_14650 IPR000534 Semialdehyde dehydrogenase, NAD-binding LLC55_14650 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site LLC55_14650 IPR036291 NAD(P)-binding domain superfamily LLC55_14650 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 LLC55_14655 IPR008948 L-Aspartase-like LLC55_14655 IPR024083 Fumarase/histidase, N-terminal LLC55_14655 IPR020557 Fumarate lyase, conserved site LLC55_14655 IPR009049 Argininosuccinate lyase LLC55_14655 IPR000362 Fumarate lyase family LLC55_14655 IPR022761 Fumarate lyase, N-terminal LLC55_14670 IPR036974 PUA domain superfamily LLC55_14670 IPR011529 Glutamate 5-kinase LLC55_14670 IPR001057 Glutamate/acetylglutamate kinase LLC55_14670 IPR041739 Glutamate-5-kinase domain LLC55_14670 IPR001048 Aspartate/glutamate/uridylate kinase LLC55_14670 IPR036393 Acetylglutamate kinase-like superfamily LLC55_14670 IPR015947 PUA-like superfamily LLC55_14670 IPR002478 PUA domain LLC55_14670 IPR019797 Glutamate 5-kinase, conserved site LLC55_14670 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase LLC55_14675 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_14675 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_14675 IPR015590 Aldehyde dehydrogenase domain LLC55_14675 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site LLC55_14675 IPR012134 Glutamate-5-semialdehyde dehydrogenase LLC55_14675 IPR000965 GPR domain LLC55_14675 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_14680 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal LLC55_14680 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain LLC55_14680 IPR008979 Galactose-binding-like domain superfamily LLC55_14680 IPR029058 Alpha/Beta hydrolase fold LLC55_14680 IPR005674 CocE/Serine esterase LLC55_14710 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_14710 IPR039421 Type I protein exporter LLC55_14710 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14710 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD LLC55_14710 IPR017871 ABC transporter, conserved site LLC55_14710 IPR003439 ABC transporter-like LLC55_14710 IPR011527 ABC transporter type 1, transmembrane domain LLC55_14710 IPR003593 AAA+ ATPase domain LLC55_14715 IPR011527 ABC transporter type 1, transmembrane domain LLC55_14715 IPR003593 AAA+ ATPase domain LLC55_14715 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC LLC55_14715 IPR003439 ABC transporter-like LLC55_14715 IPR017871 ABC transporter, conserved site LLC55_14715 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_14715 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14760 IPR009056 Cytochrome c-like domain LLC55_14760 IPR036909 Cytochrome c-like domain superfamily LLC55_14795 IPR008490 Transposase InsH, N-terminal LLC55_14795 IPR002559 Transposase, IS4-like LLC55_14805 IPR002559 Transposase, IS4-like LLC55_14805 IPR008490 Transposase InsH, N-terminal LLC55_14815 IPR006530 YD repeat LLC55_14815 IPR022385 Rhs repeat-associated core LLC55_14815 IPR001826 RHS protein LLC55_14815 IPR031325 RHS repeat LLC55_14825 IPR008490 Transposase InsH, N-terminal LLC55_14825 IPR002559 Transposase, IS4-like LLC55_14855 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily LLC55_14855 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_14855 IPR036641 HPT domain superfamily LLC55_14855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_14855 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_14855 IPR004105 Histidine kinase CheA-like, homodimeric domain LLC55_14855 IPR005467 Histidine kinase domain LLC55_14855 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_14855 IPR036061 CheW-like domain superfamily LLC55_14855 IPR002545 CheW-like domain LLC55_14855 IPR011006 CheY-like superfamily LLC55_14855 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_14855 IPR001789 Signal transduction response regulator, receiver domain LLC55_14860 IPR007439 Chemotaxis phosphatase, CheZ LLC55_14865 IPR001789 Signal transduction response regulator, receiver domain LLC55_14865 IPR011006 CheY-like superfamily LLC55_14870 IPR028617 RNA polymerase sigma factor FliA LLC55_14870 IPR013325 RNA polymerase sigma factor, region 2 LLC55_14870 IPR014284 RNA polymerase sigma-70 like domain LLC55_14870 IPR012845 RNA polymerase sigma factor, FliA/WhiG LLC55_14870 IPR000943 RNA polymerase sigma-70 LLC55_14870 IPR007627 RNA polymerase sigma-70 region 2 LLC55_14870 IPR007624 RNA polymerase sigma-70 region 3 LLC55_14870 IPR007630 RNA polymerase sigma-70 region 4 LLC55_14870 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_14875 IPR025501 ATP binding protein MinD LLC55_14875 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14875 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 LLC55_14880 IPR020006 Flagellar biosynthesis protein FlhF LLC55_14880 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain LLC55_14880 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14880 IPR003593 AAA+ ATPase domain LLC55_14885 IPR006301 Flagellar biosynthesis protein FlhA LLC55_14885 IPR001712 Type III secretion system FHIPEP LLC55_14885 IPR042193 FHIPEP, domain 3 LLC55_14885 IPR042194 FHIPEP, domain 1 LLC55_14885 IPR025505 FHIPEP conserved site LLC55_14885 IPR042196 FHIPEP, domain 4 LLC55_14890 IPR006136 Flagellar biosynthetic protein FlhB LLC55_14890 IPR006135 Type III secretion system substrate exporter LLC55_14890 IPR029025 Type III secretion system substrate exporter, C-terminal LLC55_14895 IPR001633 EAL domain LLC55_14895 IPR005330 MHYT domain LLC55_14895 IPR000160 GGDEF domain LLC55_14895 IPR035919 EAL domain superfamily LLC55_14895 IPR029787 Nucleotide cyclase LLC55_14900 IPR029787 Nucleotide cyclase LLC55_14900 IPR000160 GGDEF domain LLC55_14905 IPR029787 Nucleotide cyclase LLC55_14905 IPR000160 GGDEF domain LLC55_14910 IPR002010 Type III secretion system inner membrane R protein LLC55_14910 IPR006303 Flagellar biosynthesis protein FliR LLC55_14915 IPR006305 Flagellar biosynthesis protein FliQ LLC55_14915 IPR002191 Bacterial export protein family 3 LLC55_14920 IPR005837 Flagellar transport protein FliP LLC55_14920 IPR005838 Type III secretion system inner membrane P protein LLC55_14925 IPR022781 Flagellar biosynthesis protein, FliO LLC55_14930 IPR012826 Flagellar motor switch FliN LLC55_14930 IPR036429 SpoA-like superfamily LLC55_14930 IPR001543 Surface presentation of antigen (SpoA) LLC55_14930 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb LLC55_14935 IPR001543 Surface presentation of antigen (SpoA) LLC55_14935 IPR028976 CheC-like superfamily LLC55_14935 IPR036429 SpoA-like superfamily LLC55_14935 IPR001689 Flagellar motor switch protein FliM LLC55_14955 IPR020005 Flagellar export ATPase FliI, clade 1 LLC55_14955 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_14955 IPR005714 ATPase, type III secretion system, FliI/YscN LLC55_14955 IPR032463 ATPase, type III secretion system, FliI LLC55_14955 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain LLC55_14955 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site LLC55_14955 IPR003593 AAA+ ATPase domain LLC55_14955 IPR040627 T3SS EscN ATPase, C-terminal LLC55_14965 IPR000090 Flagellar motor switch protein FliG LLC55_14965 IPR023087 Flagellar motor switch protein FliG, C-terminal LLC55_14965 IPR011002 Flagellar motor switch protein FliG, alpha-helical LLC55_14965 IPR032779 Flagellar motor switch protein FliG, middle domain LLC55_14965 IPR028263 Flagellar motor switch protein FliG, N-terminal domain LLC55_14970 IPR000067 Flagellar M-ring protein FliF LLC55_14970 IPR006182 Secretory protein YscJ/FliF LLC55_14970 IPR013556 Flagellar M-ring C-terminal LLC55_14975 IPR001624 Flagellar hook-basal body complex protein FliE LLC55_14980 IPR001296 Glycosyl transferase, family 1 LLC55_14980 IPR001173 Glycosyltransferase 2-like LLC55_14980 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_15005 IPR036291 NAD(P)-binding domain superfamily LLC55_15005 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_15005 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_15010 IPR036291 NAD(P)-binding domain superfamily LLC55_15010 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_15010 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_15015 IPR016039 Thiolase-like LLC55_15015 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LLC55_15015 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal LLC55_15015 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 LLC55_15025 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_15025 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_15025 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase LLC55_15030 IPR025944 Sigma-54 interaction domain, conserved site LLC55_15030 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 LLC55_15030 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 LLC55_15030 IPR002078 RNA polymerase sigma factor 54 interaction domain LLC55_15030 IPR011006 CheY-like superfamily LLC55_15030 IPR002197 DNA binding HTH domain, Fis-type LLC55_15030 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15030 IPR003593 AAA+ ATPase domain LLC55_15030 IPR010518 Flagellar regulatory FleQ LLC55_15030 IPR009057 Homeobox-like domain superfamily LLC55_15035 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type LLC55_15035 IPR035909 Methylesterase CheB, C-terminal LLC55_15035 IPR011006 CheY-like superfamily LLC55_15035 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase LLC55_15035 IPR001789 Signal transduction response regulator, receiver domain LLC55_15040 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily LLC55_15040 IPR007634 RNA polymerase sigma factor 54, DNA-binding LLC55_15040 IPR000394 RNA polymerase sigma factor 54 LLC55_15040 IPR007046 RNA polymerase sigma factor 54, core-binding domain LLC55_15045 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_15045 IPR001789 Signal transduction response regulator, receiver domain LLC55_15045 IPR000792 Transcription regulator LuxR, C-terminal LLC55_15045 IPR011006 CheY-like superfamily LLC55_15065 IPR003713 Flagellar protein FliS LLC55_15065 IPR036584 Flagellar protein FliS superfamily LLC55_15070 IPR003481 Flagellar hook-associated protein 2, N-terminal LLC55_15070 IPR010810 Flagellin hook, IN motif LLC55_15070 IPR040026 Flagellar hook-associated protein 2 LLC55_15070 IPR010809 Flagellar hook-associated protein 2, C-terminal LLC55_15075 IPR001492 Flagellin LLC55_15075 IPR001029 Flagellin, D0/D1 domain LLC55_15075 IPR042187 Flagellin, C-terminal domain, subdomain 2 LLC55_15085 IPR010810 Flagellin hook, IN motif LLC55_15085 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LLC55_15085 IPR002371 Flagellar hook-associated protein 1 LLC55_15090 IPR019301 Flagellar protein FlgJ, N-terminal LLC55_15090 IPR013377 Peptidoglycan hydrolase FlgJ LLC55_15090 IPR023346 Lysozyme-like domain superfamily LLC55_15090 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain LLC55_15095 IPR001782 Flagellar P-ring protein LLC55_15100 IPR000527 Flagellar L-ring protein LLC55_15105 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LLC55_15105 IPR012834 Flagellar basal-body rod FlgG LLC55_15105 IPR019776 Flagellar basal body rod protein, conserved site LLC55_15105 IPR001444 Flagellar basal body rod protein, N-terminal LLC55_15105 IPR020013 Flagellar hook-basal body protein, FlgE/F/G LLC55_15105 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like LLC55_15110 IPR001444 Flagellar basal body rod protein, N-terminal LLC55_15110 IPR019776 Flagellar basal body rod protein, conserved site LLC55_15110 IPR020013 Flagellar hook-basal body protein, FlgE/F/G LLC55_15110 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LLC55_15110 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like LLC55_15115 IPR011491 Flagellar hook protein FlgE LLC55_15115 IPR037058 Flagellar hook protein FlgE superfamily LLC55_15115 IPR001444 Flagellar basal body rod protein, N-terminal LLC55_15115 IPR019776 Flagellar basal body rod protein, conserved site LLC55_15115 IPR020013 Flagellar hook-basal body protein, FlgE/F/G LLC55_15115 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LLC55_15115 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like LLC55_15120 IPR005648 Flagellar hook capping protein LLC55_15125 IPR001444 Flagellar basal body rod protein, N-terminal LLC55_15125 IPR019776 Flagellar basal body rod protein, conserved site LLC55_15125 IPR010930 Flagellar basal-body/hook protein, C-terminal domain LLC55_15125 IPR006299 Flagellar basal-body rod protein FlgC LLC55_15130 IPR019776 Flagellar basal body rod protein, conserved site LLC55_15130 IPR006300 Flagellar basal-body rod protein FlgB LLC55_15135 IPR024181 Chemotaxis response regulator CheV LLC55_15135 IPR036061 CheW-like domain superfamily LLC55_15135 IPR002545 CheW-like domain LLC55_15135 IPR011006 CheY-like superfamily LLC55_15135 IPR001789 Signal transduction response regulator, receiver domain LLC55_15155 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_15155 IPR013767 PAS fold LLC55_15155 IPR035965 PAS domain superfamily LLC55_15155 IPR000014 PAS domain LLC55_15155 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_15155 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_15155 IPR005467 Histidine kinase domain LLC55_15155 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_15155 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_15160 IPR001633 EAL domain LLC55_15160 IPR035919 EAL domain superfamily LLC55_15160 IPR000160 GGDEF domain LLC55_15160 IPR005330 MHYT domain LLC55_15160 IPR029787 Nucleotide cyclase LLC55_15165 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_15165 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_15165 IPR005467 Histidine kinase domain LLC55_15165 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_15165 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LLC55_15165 IPR017203 Signal transduction histidine kinase, NreB LLC55_15170 IPR001633 EAL domain LLC55_15170 IPR000160 GGDEF domain LLC55_15170 IPR029787 Nucleotide cyclase LLC55_15170 IPR001610 PAC motif LLC55_15170 IPR000014 PAS domain LLC55_15170 IPR000700 PAS-associated, C-terminal LLC55_15170 IPR035965 PAS domain superfamily LLC55_15170 IPR013656 PAS fold-4 LLC55_15170 IPR013655 PAS fold-3 LLC55_15170 IPR035919 EAL domain superfamily LLC55_15185 IPR000727 Target SNARE coiled-coil homology domain LLC55_15185 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain LLC55_15185 IPR003660 HAMP domain LLC55_15185 IPR004090 Chemotaxis methyl-accepting receptor LLC55_15185 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain LLC55_15190 IPR007451 High frequency lysogenization protein HflD LLC55_15190 IPR035932 HflD-like superfamily LLC55_15195 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_15195 IPR023382 Adenine nucleotide alpha hydrolase-like domains LLC55_15195 IPR004506 tRNA-specific 2-thiouridylase LLC55_15200 IPR033713 Phosphatase NudJ LLC55_15200 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_15200 IPR020476 NUDIX hydrolase LLC55_15200 IPR020084 NUDIX hydrolase, conserved site LLC55_15200 IPR000086 NUDIX hydrolase domain LLC55_15205 IPR022935 ATP-dependent Clp protease adaptor protein ClpS LLC55_15205 IPR003769 Adaptor protein ClpS, core LLC55_15205 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like LLC55_15210 IPR018368 ClpA/B, conserved site 1 LLC55_15210 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15210 IPR041546 ClpA/ClpB, AAA lid domain LLC55_15210 IPR028299 ClpA/B, conserved site 2 LLC55_15210 IPR001270 ClpA/B family LLC55_15210 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA LLC55_15210 IPR004176 Clp, N-terminal LLC55_15210 IPR036628 Clp, N-terminal domain superfamily LLC55_15210 IPR019489 Clp ATPase, C-terminal LLC55_15210 IPR003959 ATPase, AAA-type, core LLC55_15210 IPR003593 AAA+ ATPase domain LLC55_15215 IPR004368 Translation initiation factor IF-1 LLC55_15215 IPR006196 RNA-binding domain, S1, IF1 type LLC55_15215 IPR012340 Nucleic acid-binding, OB-fold LLC55_15215 IPR022967 RNA-binding domain, S1 LLC55_15220 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase LLC55_15220 IPR016181 Acyl-CoA N-acyltransferase LLC55_15220 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal LLC55_15245 IPR005982 Thioredoxin reductase LLC55_15245 IPR023753 FAD/NAD(P)-binding domain LLC55_15245 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site LLC55_15245 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_15250 IPR003593 AAA+ ATPase domain LLC55_15250 IPR025199 DNA translocase FtsK, 4TM region LLC55_15250 IPR041027 FtsK alpha domain LLC55_15250 IPR002543 FtsK domain LLC55_15250 IPR018541 FtsK gamma domain LLC55_15250 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15250 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_15250 IPR036390 Winged helix DNA-binding domain superfamily LLC55_15260 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria LLC55_15260 IPR029046 Lipoprotein localisation LolA/LolB/LppX LLC55_15260 IPR004564 Outer membrane lipoprotein carrier protein LolA-like LLC55_15270 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal LLC55_15270 IPR021886 MgsA AAA+ ATPase C-terminal LLC55_15270 IPR003959 ATPase, AAA-type, core LLC55_15270 IPR032423 AAA C-terminal domain LLC55_15270 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15270 IPR003593 AAA+ ATPase domain LLC55_15280 IPR003691 Putative fluoride ion transporter CrcB LLC55_15290 IPR014743 Chloride channel, core LLC55_15290 IPR001807 Chloride channel, voltage gated LLC55_15295 IPR020610 Thiolase, active site LLC55_15295 IPR020613 Thiolase, conserved site LLC55_15295 IPR020616 Thiolase, N-terminal LLC55_15295 IPR020617 Thiolase, C-terminal LLC55_15295 IPR020615 Thiolase, acyl-enzyme intermediate active site LLC55_15295 IPR016039 Thiolase-like LLC55_15295 IPR002155 Thiolase LLC55_15300 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding LLC55_15300 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal LLC55_15300 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_15300 IPR013328 6-phosphogluconate dehydrogenase, domain 2 LLC55_15300 IPR029045 ClpP/crotonase-like domain superfamily LLC55_15300 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_15300 IPR036291 NAD(P)-binding domain superfamily LLC55_15310 IPR034907 Nucleoside diphosphate kinase-like domain LLC55_15310 IPR036850 Nucleoside diphosphate kinase-like domain superfamily LLC55_15310 IPR001564 Nucleoside diphosphate kinase LLC55_15310 IPR023005 Nucleoside diphosphate kinase, active site LLC55_15315 IPR007197 Radical SAM LLC55_15315 IPR027492 Dual-specificity RNA methyltransferase RlmN LLC55_15315 IPR040072 Methyltransferase (Class A) LLC55_15315 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr LLC55_15315 IPR013785 Aldolase-type TIM barrel LLC55_15325 IPR001387 Cro/C1-type helix-turn-helix domain LLC55_15325 IPR025194 Domain of unknown function DUF4115 LLC55_15325 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_15335 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily LLC55_15335 IPR015943 WD40/YVTN repeat-like-containing domain superfamily LLC55_15335 IPR002372 Pyrrolo-quinoline quinone repeat LLC55_15335 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat LLC55_15335 IPR017687 Outer membrane protein assembly factor BamB LLC55_15340 IPR006073 GTP binding domain LLC55_15340 IPR015946 K homology domain-like, alpha/beta LLC55_15340 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15340 IPR005225 Small GTP-binding protein domain LLC55_15340 IPR003593 AAA+ ATPase domain LLC55_15340 IPR031166 EngA-type guanine nucleotide-binding (G) domain LLC55_15340 IPR016484 GTP-binding protein EngA LLC55_15340 IPR032859 GTPase Der, C-terminal KH-domain-like LLC55_15345 IPR036135 MoeA, N-terminal and linker domain superfamily LLC55_15345 IPR036688 MoeA, C-terminal, domain IV superfamily LLC55_15345 IPR005110 MoeA, N-terminal and linker domain LLC55_15345 IPR005111 MoeA, C-terminal, domain IV LLC55_15345 IPR008284 Molybdenum cofactor biosynthesis, conserved site LLC55_15345 IPR038987 Molybdopterin biosynthesis protein MoeA-like LLC55_15345 IPR036425 MoaB/Mog-like domain superfamily LLC55_15345 IPR001453 MoaB/Mog domain LLC55_15375 IPR008490 Transposase InsH, N-terminal LLC55_15375 IPR002559 Transposase, IS4-like LLC55_15410 IPR000594 THIF-type NAD/FAD binding fold LLC55_15410 IPR035985 Ubiquitin-activating enzyme LLC55_15425 IPR019805 Heat shock protein Hsp90, conserved site LLC55_15425 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_15425 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_15425 IPR037196 HSP90, C-terminal domain LLC55_15425 IPR001404 Heat shock protein Hsp90 family LLC55_15425 IPR020575 Heat shock protein Hsp90, N-terminal LLC55_15425 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_15430 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_15430 IPR004398 RNA methyltransferase, RsmD LLC55_15430 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_15435 IPR004821 Cytidyltransferase-like domain LLC55_15435 IPR001980 Phosphopantetheine adenylyltransferase LLC55_15435 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_15445 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LLC55_15445 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_15450 IPR000101 Gamma-glutamyltranspeptidase LLC55_15450 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_15470 IPR029057 Phosphoribosyltransferase-like LLC55_15470 IPR005765 Uracil phosphoribosyl transferase LLC55_15470 IPR034332 Uracil phosphoribosyltransferase, bacterial-type LLC55_15470 IPR000836 Phosphoribosyltransferase domain LLC55_15520 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily LLC55_15520 IPR042119 QueA, domain 2 LLC55_15520 IPR042118 QueA, domain 1 LLC55_15520 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA LLC55_15525 IPR002616 tRNA-guanine(15) transglycosylase-like LLC55_15525 IPR036511 Queuine tRNA-ribosyltransferase-like LLC55_15525 IPR004803 tRNA-guanine transglycosylase LLC55_15530 IPR003849 Preprotein translocase YajC LLC55_15535 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site LLC55_15535 IPR022645 Protein-export membrane protein SecD/SecF, bacterial LLC55_15535 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial LLC55_15535 IPR027398 SecD export protein N-terminal TM domain LLC55_15535 IPR005791 Protein translocase subunit SecD LLC55_15535 IPR001036 Acriflavin resistance protein LLC55_15540 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site LLC55_15540 IPR022645 Protein-export membrane protein SecD/SecF, bacterial LLC55_15540 IPR005665 Protein-export membrane protein SecF, bacterial LLC55_15540 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial LLC55_15545 IPR010998 Integrase/recombinase, N-terminal LLC55_15545 IPR011946 Integrase, integron-type LLC55_15545 IPR002104 Integrase, catalytic domain LLC55_15545 IPR013762 Integrase-like, catalytic domain superfamily LLC55_15545 IPR011010 DNA breaking-rejoining enzyme, catalytic core LLC55_15545 IPR004107 Integrase, SAM-like, N-terminal LLC55_15550 IPR008490 Transposase InsH, N-terminal LLC55_15550 IPR002559 Transposase, IS4-like LLC55_15570 IPR001207 Transposase, mutator type LLC55_15585 IPR013520 Exonuclease, RNase T/DNA polymerase III LLC55_15585 IPR005987 Ribonuclease T LLC55_15585 IPR012337 Ribonuclease H-like superfamily LLC55_15585 IPR036397 Ribonuclease H superfamily LLC55_15595 IPR028366 Phosphate transport system protein PhoU LLC55_15595 IPR038078 PhoU-like domain superfamily LLC55_15595 IPR026022 PhoU domain LLC55_15600 IPR003593 AAA+ ATPase domain LLC55_15600 IPR003439 ABC transporter-like LLC55_15600 IPR017871 ABC transporter, conserved site LLC55_15600 IPR015850 ABC transporter, phosphate import, PstB LLC55_15600 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15600 IPR005670 Phosphate transport system permease protein 1 LLC55_15605 IPR035906 MetI-like superfamily LLC55_15605 IPR005672 Phosphate transport system permease protein PstA LLC55_15605 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_15610 IPR011864 Phosphate ABC transporter, permease protein PstC LLC55_15610 IPR035906 MetI-like superfamily LLC55_15610 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_15615 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS LLC55_15615 IPR024370 PBP domain LLC55_15620 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS LLC55_15620 IPR024370 PBP domain LLC55_15655 IPR008490 Transposase InsH, N-terminal LLC55_15655 IPR002559 Transposase, IS4-like LLC55_15675 IPR005759 Endonuclease III LLC55_15675 IPR000445 Helix-hairpin-helix motif LLC55_15675 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal LLC55_15675 IPR004035 Endonuclease III, iron-sulphur binding site LLC55_15675 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif LLC55_15675 IPR004036 Endonuclease III-like, conserved site-2 LLC55_15675 IPR011257 DNA glycosylase LLC55_15675 IPR003265 HhH-GPD domain LLC55_15685 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_15685 IPR029045 ClpP/crotonase-like domain superfamily LLC55_15685 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LLC55_15685 IPR014748 Enoyl-CoA hydratase, C-terminal LLC55_15690 IPR008104 Macrophage infectivity potentiator LLC55_15690 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain LLC55_15690 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal LLC55_15690 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily LLC55_15700 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_15700 IPR023735 Uncharacterised nudix hydrolase NudL LLC55_15700 IPR000059 NUDIX hydrolase, NudL, conserved site LLC55_15700 IPR000086 NUDIX hydrolase domain LLC55_15705 IPR036873 Rhodanese-like domain superfamily LLC55_15705 IPR001763 Rhodanese-like domain LLC55_15745 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_15745 IPR000241 Putative RNA methylase domain LLC55_15745 IPR019614 S-adenosylmethionine-dependent methyltransferase LLC55_15745 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_15745 IPR004114 THUMP domain LLC55_15745 IPR017244 Ribosomal RNA large subunit methyltransferase K/L LLC55_15755 IPR002504 NAD kinase LLC55_15755 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal LLC55_15755 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal LLC55_15755 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily LLC55_15770 IPR020471 Aldo/keto reductase LLC55_15770 IPR023210 NADP-dependent oxidoreductase domain LLC55_15770 IPR036812 NADP-dependent oxidoreductase domain superfamily LLC55_15780 IPR036397 Ribonuclease H superfamily LLC55_15780 IPR012337 Ribonuclease H-like superfamily LLC55_15780 IPR013520 Exonuclease, RNase T/DNA polymerase III LLC55_15780 IPR013620 Exodeoxyribonuclease I, C-terminal LLC55_15780 IPR038649 Exonuclease I, SH3-like domain superfamily LLC55_15780 IPR034747 Exonuclease I, SH3-like domain LLC55_15780 IPR034748 Exonuclease I, C-terminal alpha-helical domain LLC55_15780 IPR023607 Exodeoxyribonuclease I LLC55_15785 IPR027545 Kynurenine 3-monooxygenase LLC55_15785 IPR002938 FAD-binding domain LLC55_15785 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_15790 IPR010111 Kynureninase LLC55_15790 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_15790 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_15790 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_15790 IPR000192 Aminotransferase class V domain LLC55_15800 IPR014710 RmlC-like jelly roll fold LLC55_15800 IPR011051 RmlC-like cupin domain superfamily LLC55_15800 IPR010329 3-hydroxyanthranilic acid dioxygenase LLC55_15805 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site LLC55_15805 IPR001765 Carbonic anhydrase LLC55_15805 IPR036874 Carbonic anhydrase superfamily LLC55_15830 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LLC55_15830 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_15830 IPR004522 Asparagine-tRNA ligase LLC55_15830 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb LLC55_15830 IPR012340 Nucleic acid-binding, OB-fold LLC55_15830 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LLC55_15835 IPR016092 FeS cluster insertion protein LLC55_15835 IPR000361 FeS cluster biogenesis LLC55_15835 IPR035903 HesB-like domain superfamily LLC55_15835 IPR017870 FeS cluster insertion, C-terminal, conserved site LLC55_15840 IPR000529 Ribosomal protein S6 LLC55_15840 IPR020814 Ribosomal protein S6, plastid/chloroplast LLC55_15840 IPR035980 Ribosomal protein S6 superfamily LLC55_15840 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 LLC55_15845 IPR001648 Ribosomal protein S18 LLC55_15845 IPR018275 Ribosomal protein S18, conserved site LLC55_15845 IPR036870 Ribosomal protein S18 superfamily LLC55_15850 IPR009027 Ribosomal protein L9/RNase H1, N-terminal LLC55_15850 IPR036935 Ribosomal protein L9, N-terminal domain superfamily LLC55_15850 IPR020070 Ribosomal protein L9, N-terminal LLC55_15850 IPR020069 Ribosomal protein L9, C-terminal LLC55_15850 IPR000244 Ribosomal protein L9 LLC55_15850 IPR020594 Ribosomal protein L9, bacteria/chloroplast LLC55_15850 IPR036791 Ribosomal protein L9, C-terminal domain superfamily LLC55_15855 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_15855 IPR003395 RecF/RecN/SMC, N-terminal LLC55_15855 IPR024704 Structural maintenance of chromosomes protein LLC55_15855 IPR010935 SMCs flexible hinge LLC55_15855 IPR036277 SMCs flexible hinge superfamily LLC55_15855 IPR011890 Structural maintenance of chromosomes protein, prokaryotic LLC55_15860 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily LLC55_15860 IPR011919 Cell division protein ZipA LLC55_15860 IPR007449 ZipA, C-terminal FtsZ-binding domain LLC55_15875 IPR001357 BRCT domain LLC55_15875 IPR036420 BRCT domain superfamily LLC55_15875 IPR041663 DisA/LigA, helix-hairpin-helix motif LLC55_15875 IPR018239 NAD-dependent DNA ligase, active site LLC55_15875 IPR001679 NAD-dependent DNA ligase LLC55_15875 IPR013839 NAD-dependent DNA ligase, adenylation LLC55_15875 IPR013840 NAD-dependent DNA ligase, N-terminal LLC55_15875 IPR012340 Nucleic acid-binding, OB-fold LLC55_15875 IPR004150 NAD-dependent DNA ligase, OB-fold LLC55_15875 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type LLC55_15875 IPR010994 RuvA domain 2-like LLC55_15880 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) LLC55_15880 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_15880 IPR004525 Elongation factor P--(R)-beta-lysine ligase LLC55_15880 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal LLC55_15895 IPR037171 NagB/RpiA transferase-like LLC55_15895 IPR000649 Initiation factor 2B-related LLC55_15895 IPR005251 Methylthioribose-1-phosphate isomerase LLC55_15895 IPR011559 Initiation factor 2B alpha/beta/delta LLC55_15895 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal LLC55_15900 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily LLC55_15900 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta LLC55_15900 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal LLC55_15900 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LLC55_15900 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal LLC55_15900 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat LLC55_15900 IPR005743 DNA gyrase, subunit A LLC55_15920 IPR035400 Urocanase, N-terminal domain LLC55_15920 IPR035085 Urocanase, Rossmann-like domain LLC55_15920 IPR023636 Urocanase conserved site LLC55_15920 IPR023637 Urocanase LLC55_15920 IPR035401 Urocanase, C-terminal domain LLC55_15920 IPR036190 Urocanase superfamily LLC55_15920 IPR038364 Urocanase, central domain superfamily LLC55_15930 IPR022313 Phenylalanine/histidine ammonia-lyases, active site LLC55_15930 IPR008948 L-Aspartase-like LLC55_15930 IPR005921 Histidine ammonia-lyase LLC55_15930 IPR001106 Aromatic amino acid lyase LLC55_15930 IPR024083 Fumarase/histidase, N-terminal LLC55_15935 IPR013108 Amidohydrolase 3 LLC55_15935 IPR005920 Imidazolonepropionase LLC55_15935 IPR011059 Metal-dependent hydrolase, composite domain superfamily LLC55_15935 IPR032466 Metal-dependent hydrolase LLC55_15945 IPR036390 Winged helix DNA-binding domain superfamily LLC55_15945 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_15945 IPR011663 UbiC transcription regulator-associated LLC55_15945 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily LLC55_15945 IPR010248 Histidine utilization repressor LLC55_15945 IPR000524 Transcription regulator HTH, GntR LLC55_15970 IPR013130 Ferric reductase transmembrane component-like domain LLC55_15970 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ LLC55_15975 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP LLC55_15975 IPR000572 Oxidoreductase, molybdopterin-binding domain LLC55_15975 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily LLC55_15980 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_15980 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_15980 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_15980 IPR000192 Aminotransferase class V domain LLC55_15980 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site LLC55_15980 IPR022278 Phosphoserine aminotransferase LLC55_15985 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain LLC55_15985 IPR018528 Prephenate dehydratase, conserved site LLC55_15985 IPR001086 Prephenate dehydratase LLC55_15985 IPR002701 Chorismate mutase II, prokaryotic-type LLC55_15985 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase LLC55_15985 IPR036263 Chorismate mutase type II superfamily LLC55_15985 IPR002912 ACT domain LLC55_15985 IPR036979 Chorismate mutase domain superfamily LLC55_15990 IPR001986 Enolpyruvate transferase domain LLC55_15990 IPR036968 Enolpyruvate transferase domain superfamily LLC55_15990 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase LLC55_15990 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site LLC55_15990 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta LLC55_16015 IPR012332 P22 tailspike-like, C-terminal domain superfamily LLC55_16015 IPR005546 Autotransporter beta-domain LLC55_16015 IPR036709 Autotransporter beta-domain superfamily LLC55_16015 IPR013425 Autotransporter-associated beta strand repeat LLC55_16015 IPR011050 Pectin lyase fold/virulence factor LLC55_16015 IPR006315 Outer membrane autotransporter barrel LLC55_16020 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_16020 IPR000792 Transcription regulator LuxR, C-terminal LLC55_16020 IPR001789 Signal transduction response regulator, receiver domain LLC55_16020 IPR011006 CheY-like superfamily LLC55_16025 IPR011006 CheY-like superfamily LLC55_16025 IPR001610 PAC motif LLC55_16025 IPR035965 PAS domain superfamily LLC55_16025 IPR013656 PAS fold-4 LLC55_16025 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_16025 IPR001789 Signal transduction response regulator, receiver domain LLC55_16025 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_16025 IPR000700 PAS-associated, C-terminal LLC55_16025 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_16025 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_16025 IPR005467 Histidine kinase domain LLC55_16025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_16025 IPR000014 PAS domain LLC55_16030 IPR010131 RND efflux system, outer membrane lipoprotein, NodT LLC55_16030 IPR003423 Outer membrane efflux protein LLC55_16035 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA LLC55_16035 IPR001036 Acriflavin resistance protein LLC55_16035 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LLC55_16040 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_16040 IPR005695 Cobalt/zinc/cadmium resistance protein CzcB LLC55_16040 IPR006143 RND efflux pump, membrane fusion protein LLC55_16045 IPR005546 Autotransporter beta-domain LLC55_16045 IPR036709 Autotransporter beta-domain superfamily LLC55_16045 IPR036852 Peptidase S8/S53 domain superfamily LLC55_16045 IPR023828 Peptidase S8, subtilisin, Ser-active site LLC55_16045 IPR015500 Peptidase S8, subtilisin-related LLC55_16045 IPR000209 Peptidase S8/S53 domain LLC55_16045 IPR034061 Autotransporter serine protease peptidase domain LLC55_16050 IPR008490 Transposase InsH, N-terminal LLC55_16065 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain LLC55_16065 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_16070 IPR022838 GTP cyclohydrolase FolE2 LLC55_16070 IPR003801 GTP cyclohydrolase FolE2/MptA LLC55_16080 IPR002646 Poly A polymerase, head domain LLC55_16080 IPR010206 Poly(A) polymerase I LLC55_16080 IPR025866 Polymerase A arginine-rich C-terminal domain LLC55_16080 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain LLC55_16085 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily LLC55_16085 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK LLC55_16090 IPR040442 Pyruvate kinase-like domain superfamily LLC55_16090 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_16090 IPR003700 Ketopantoate hydroxymethyltransferase LLC55_16095 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain LLC55_16095 IPR003721 Pantoate-beta-alanine ligase LLC55_16095 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_16100 IPR003190 Aspartate decarboxylase LLC55_16100 IPR009010 Aspartate decarboxylase-like domain superfamily LLC55_16105 IPR035482 Phosphoglucose isomerase, SIS domain 2 LLC55_16105 IPR035476 Phosphoglucose isomerase, SIS domain 1 LLC55_16105 IPR018189 Phosphoglucose isomerase, conserved site LLC55_16105 IPR023096 Phosphoglucose isomerase, C-terminal LLC55_16105 IPR001672 Phosphoglucose isomerase (PGI) LLC55_16125 IPR026891 Fibronectin type III-like domain LLC55_16125 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily LLC55_16125 IPR001764 Glycoside hydrolase, family 3, N-terminal LLC55_16125 IPR013783 Immunoglobulin-like fold LLC55_16125 IPR017853 Glycoside hydrolase superfamily LLC55_16125 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LLC55_16125 IPR002772 Glycoside hydrolase family 3 C-terminal domain LLC55_16130 IPR038377 Sodium/glucose symporter superfamily LLC55_16130 IPR001734 Sodium/solute symporter LLC55_16130 IPR018212 Sodium/solute symporter, conserved site LLC55_16140 IPR001633 EAL domain LLC55_16140 IPR013515 Phytochrome, central region LLC55_16140 IPR003018 GAF domain LLC55_16140 IPR029016 GAF-like domain superfamily LLC55_16140 IPR000160 GGDEF domain LLC55_16140 IPR029787 Nucleotide cyclase LLC55_16140 IPR016132 Phytochrome chromophore attachment domain LLC55_16140 IPR001294 Phytochrome LLC55_16140 IPR035919 EAL domain superfamily LLC55_16155 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily LLC55_16155 IPR001764 Glycoside hydrolase, family 3, N-terminal LLC55_16155 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily LLC55_16155 IPR002772 Glycoside hydrolase family 3 C-terminal domain LLC55_16155 IPR017853 Glycoside hydrolase superfamily LLC55_16155 IPR026891 Fibronectin type III-like domain LLC55_16155 IPR013783 Immunoglobulin-like fold LLC55_16155 IPR019800 Glycoside hydrolase, family 3, active site LLC55_16190 IPR000835 MarR-type HTH domain LLC55_16190 IPR023187 Transcriptional regulator MarR-type, conserved site LLC55_16190 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_16190 IPR036390 Winged helix DNA-binding domain superfamily LLC55_16200 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_16200 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LLC55_16200 IPR007627 RNA polymerase sigma-70 region 2 LLC55_16200 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_16200 IPR039425 RNA polymerase sigma-70 like LLC55_16200 IPR014284 RNA polymerase sigma-70 like domain LLC55_16200 IPR013325 RNA polymerase sigma factor, region 2 LLC55_16205 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily LLC55_16205 IPR034063 Fervidolysin domain LLC55_16205 IPR013783 Immunoglobulin-like fold LLC55_16205 IPR000209 Peptidase S8/S53 domain LLC55_16205 IPR036852 Peptidase S8/S53 domain superfamily LLC55_16205 IPR023827 Peptidase S8, subtilisin, Asp-active site LLC55_16205 IPR022398 Peptidase S8, subtilisin, His-active site LLC55_16205 IPR023828 Peptidase S8, subtilisin, Ser-active site LLC55_16205 IPR015500 Peptidase S8, subtilisin-related LLC55_16225 IPR036249 Thioredoxin-like superfamily LLC55_16225 IPR029760 Glutathione peroxidase conserved site LLC55_16225 IPR029759 Glutathione peroxidase active site LLC55_16225 IPR000889 Glutathione peroxidase LLC55_16230 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain LLC55_16230 IPR017927 FAD-binding domain, ferredoxin reductase-type LLC55_16230 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LLC55_16230 IPR033892 Ferredoxin--NADP reductase, bacteria LLC55_16230 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LLC55_16230 IPR001433 Oxidoreductase FAD/NAD(P)-binding LLC55_16230 IPR017938 Riboflavin synthase-like beta-barrel LLC55_16235 IPR003439 ABC transporter-like LLC55_16235 IPR039421 Type I protein exporter LLC55_16235 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_16235 IPR017871 ABC transporter, conserved site LLC55_16235 IPR011527 ABC transporter type 1, transmembrane domain LLC55_16235 IPR003593 AAA+ ATPase domain LLC55_16235 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_16240 IPR020557 Fumarate lyase, conserved site LLC55_16240 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain LLC55_16240 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain LLC55_16240 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily LLC55_16240 IPR011167 Iron-dependent fumarate hydratase LLC55_16255 IPR036541 Phospholipase A1 superfamily LLC55_16255 IPR003187 Phospholipase A1 LLC55_16275 IPR000160 GGDEF domain LLC55_16275 IPR029787 Nucleotide cyclase LLC55_16300 IPR001789 Signal transduction response regulator, receiver domain LLC55_16300 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_16300 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_16300 IPR005467 Histidine kinase domain LLC55_16300 IPR011006 CheY-like superfamily LLC55_16300 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_16300 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_16300 IPR019247 Histidine kinase BarA, N-terminal LLC55_16300 IPR036641 HPT domain superfamily LLC55_16300 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_16300 IPR003660 HAMP domain LLC55_16300 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_16330 IPR000887 KDPG/KHG aldolase LLC55_16330 IPR013785 Aldolase-type TIM barrel LLC55_16330 IPR031337 KDPG/KHG aldolase, active site 1 LLC55_16330 IPR031338 KDPG/KHG aldolase, active site 2 LLC55_16335 IPR004786 6-phosphogluconate dehydratase LLC55_16335 IPR042096 Dihydroxy-acid dehydratase, C-terminal LLC55_16335 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase LLC55_16335 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site LLC55_16335 IPR037237 IlvD/EDD, N-terminal domain LLC55_16340 IPR005900 6-phosphogluconolactonase, DevB-type LLC55_16340 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase LLC55_16340 IPR037171 NagB/RpiA transferase-like LLC55_16340 IPR039104 6-Phosphogluconolactonase LLC55_16345 IPR003836 Glucokinase LLC55_16350 IPR036291 NAD(P)-binding domain superfamily LLC55_16350 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding LLC55_16350 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal LLC55_16350 IPR001282 Glucose-6-phosphate dehydrogenase LLC55_16350 IPR019796 Glucose-6-phosphate dehydrogenase, active site LLC55_16355 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC LLC55_16355 IPR003593 AAA+ ATPase domain LLC55_16355 IPR003439 ABC transporter-like LLC55_16355 IPR017871 ABC transporter, conserved site LLC55_16355 IPR008995 Molybdate/tungstate binding, C-terminal LLC55_16355 IPR040582 MalK, OB fold domain LLC55_16355 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_16365 IPR023758 tRNA-modifying protein YgfZ LLC55_16365 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal LLC55_16365 IPR017703 YgfZ/GcvT conserved site LLC55_16365 IPR006222 Aminomethyltransferase, folate-binding domain LLC55_16375 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit LLC55_16375 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit LLC55_16375 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site LLC55_16375 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit LLC55_16380 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit LLC55_16380 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit LLC55_16380 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor LLC55_16385 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain LLC55_16385 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_16385 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site LLC55_16385 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily LLC55_16385 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal LLC55_16385 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily LLC55_16385 IPR011281 Succinate dehydrogenase, flavoprotein subunit LLC55_16385 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit LLC55_16395 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal LLC55_16395 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein LLC55_16395 IPR009051 Alpha-helical ferredoxin LLC55_16395 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LLC55_16395 IPR012675 Beta-grasp domain superfamily LLC55_16395 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site LLC55_16395 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain LLC55_16395 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_16395 IPR036010 2Fe-2S ferredoxin-like superfamily LLC55_16400 IPR036714 Flavinator of succinate dehydrogenase superfamily LLC55_16400 IPR005631 Flavinator of succinate dehydrogenase LLC55_16410 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E LLC55_16410 IPR025857 MacB-like periplasmic core domain LLC55_16410 IPR003838 ABC transporter permease protein domain LLC55_16415 IPR003593 AAA+ ATPase domain LLC55_16415 IPR003439 ABC transporter-like LLC55_16415 IPR015854 ABC transporter, lipoprotein release, LolD LLC55_16415 IPR011924 Lipoprotein releasing system, ATP-binding protein LLC55_16415 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_16435 IPR002898 MotA/TolQ/ExbB proton channel LLC55_16445 IPR039421 Type I protein exporter LLC55_16445 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_16445 IPR011917 ABC transporter, lipid A export, MsbA LLC55_16445 IPR003439 ABC transporter-like LLC55_16445 IPR003593 AAA+ ATPase domain LLC55_16445 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_16445 IPR017871 ABC transporter, conserved site LLC55_16445 IPR011527 ABC transporter type 1, transmembrane domain LLC55_16450 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_16450 IPR003758 Tetraacyldisaccharide 4'-kinase LLC55_16455 IPR003329 Acylneuraminate cytidylyltransferase LLC55_16455 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase LLC55_16455 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_16460 IPR036196 Phosphotyrosine protein phosphatase I superfamily LLC55_16460 IPR017867 Protein-tyrosine phosphatase, low molecular weight LLC55_16460 IPR023485 Phosphotyrosine protein phosphatase I LLC55_16470 IPR010994 RuvA domain 2-like LLC55_16470 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 LLC55_16470 IPR035901 GIY-YIG endonuclease superfamily LLC55_16470 IPR036876 UVR domain superfamily LLC55_16470 IPR004791 UvrABC system, subunit C LLC55_16470 IPR001943 UVR domain LLC55_16470 IPR001162 UvrC family homology region LLC55_16470 IPR038476 UvrC homology region 2 superfamily LLC55_16470 IPR000305 GIY-YIG endonuclease LLC55_16475 IPR000462 CDP-alcohol phosphatidyltransferase LLC55_16475 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase LLC55_16495 IPR037523 Vicinal oxygen chelate (VOC) domain LLC55_16495 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase LLC55_16495 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain LLC55_16500 IPR036397 Ribonuclease H superfamily LLC55_16500 IPR001584 Integrase, catalytic core LLC55_16500 IPR009057 Homeobox-like domain superfamily LLC55_16500 IPR012337 Ribonuclease H-like superfamily LLC55_16500 IPR001598 Transposase, IS30, conserved site LLC55_16505 IPR001207 Transposase, mutator type LLC55_16520 IPR005042 TAL effector repeat LLC55_16540 IPR005042 TAL effector repeat LLC55_16555 IPR005042 TAL effector repeat LLC55_16615 IPR012340 Nucleic acid-binding, OB-fold LLC55_16615 IPR003512 Bacteriophage M13, G5P, DNA-binding LLC55_16720 IPR036670 SecA, preprotein cross-linking domain superfamily LLC55_16720 IPR036266 SecA, Wing/Scaffold superfamily LLC55_16720 IPR011116 SecA Wing/Scaffold LLC55_16720 IPR011130 SecA, preprotein cross-linking domain LLC55_16720 IPR014018 SecA motor DEAD LLC55_16720 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_16720 IPR004027 SEC-C motif LLC55_16720 IPR000185 Protein translocase subunit SecA LLC55_16720 IPR020937 SecA conserved site LLC55_16720 IPR011115 SecA DEAD-like, N-terminal LLC55_16730 IPR005042 TAL effector repeat LLC55_16745 IPR005042 TAL effector repeat LLC55_16755 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase LLC55_16755 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like LLC55_16755 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain LLC55_16755 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily LLC55_16755 IPR023019 Histidine biosynthesis bifunctional protein HisIE LLC55_16760 IPR006062 Histidine biosynthesis LLC55_16760 IPR004651 Histidine biosynthesis, HisF LLC55_16760 IPR011060 Ribulose-phosphate binding barrel LLC55_16760 IPR013785 Aldolase-type TIM barrel LLC55_16765 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA LLC55_16765 IPR011060 Ribulose-phosphate binding barrel LLC55_16765 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase LLC55_16765 IPR006062 Histidine biosynthesis LLC55_16765 IPR013785 Aldolase-type TIM barrel LLC55_16770 IPR017926 Glutamine amidotransferase LLC55_16770 IPR010139 Imidazole glycerol phosphate synthase, subunit H LLC55_16770 IPR029062 Class I glutamine amidotransferase-like LLC55_16775 IPR006543 Histidinol-phosphate phosphatase LLC55_16775 IPR000807 Imidazoleglycerol-phosphate dehydratase LLC55_16775 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily LLC55_16775 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site LLC55_16775 IPR005954 Histidinol-phosphatase LLC55_16775 IPR023214 HAD superfamily LLC55_16775 IPR006549 HAD-superfamily hydrolase,subfamily IIIA LLC55_16775 IPR036412 HAD-like superfamily LLC55_16775 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_16775 IPR020566 Histidine biosynthesis bifunctional protein HisB LLC55_16780 IPR005861 Histidinol-phosphate aminotransferase family LLC55_16780 IPR004839 Aminotransferase, class I/classII LLC55_16780 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_16780 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_16780 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_16785 IPR012131 Histidinol dehydrogenase LLC55_16785 IPR022695 Histidinol dehydrogenase, monofunctional LLC55_16785 IPR001692 Histidinol dehydrogenase, conserved site LLC55_16785 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_16790 IPR013115 Histidine biosynthesis HisG, C-terminal LLC55_16790 IPR013820 ATP phosphoribosyltransferase, catalytic domain LLC55_16790 IPR018198 ATP phosphoribosyltransferase, conserved site LLC55_16790 IPR001348 ATP phosphoribosyltransferase HisG LLC55_16790 IPR020621 ATP phosphoribosyltransferase HisG, long form LLC55_16790 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal LLC55_16810 IPR036621 Anticodon-binding domain superfamily LLC55_16810 IPR015807 Histidine-tRNA ligase LLC55_16810 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain LLC55_16810 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_16810 IPR004154 Anticodon-binding LLC55_16810 IPR033656 Histidyl-anticodon-binding LLC55_16810 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit LLC55_16825 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_16825 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site LLC55_16825 IPR037158 Threonine synthase, N-terminal domain superfamily LLC55_16825 IPR004450 Threonine synthase-like LLC55_16825 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_16825 IPR029144 Threonine synthase, N-terminal LLC55_16840 IPR013750 GHMP kinase, C-terminal domain LLC55_16840 IPR036554 GHMP kinase, C-terminal domain superfamily LLC55_16840 IPR006204 GHMP kinase N-terminal domain LLC55_16840 IPR000870 Homoserine kinase LLC55_16840 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_16840 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_16845 IPR001048 Aspartate/glutamate/uridylate kinase LLC55_16845 IPR001342 Homoserine dehydrogenase, catalytic LLC55_16845 IPR027795 CASTOR, ACT domain LLC55_16845 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I LLC55_16845 IPR018042 Aspartate kinase, conserved site LLC55_16845 IPR001341 Aspartate kinase LLC55_16845 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding LLC55_16845 IPR036393 Acetylglutamate kinase-like superfamily LLC55_16845 IPR002912 ACT domain LLC55_16845 IPR019811 Homoserine dehydrogenase, conserved site LLC55_16845 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain LLC55_16845 IPR036291 NAD(P)-binding domain superfamily LLC55_16860 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_16860 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_16860 IPR016160 Aldehyde dehydrogenase, cysteine active site LLC55_16860 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_16860 IPR015590 Aldehyde dehydrogenase domain LLC55_16860 IPR010102 Succinate semialdehyde dehydrogenase LLC55_16860 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent LLC55_16880 IPR001295 Dihydroorotate dehydrogenase, conserved site LLC55_16880 IPR005719 Dihydroorotate dehydrogenase, class 2 LLC55_16880 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 LLC55_16880 IPR013785 Aldolase-type TIM barrel LLC55_16880 IPR005720 Dihydroorotate dehydrogenase domain LLC55_16885 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily LLC55_16885 IPR016169 FAD-binding, type PCMH, subdomain 2 LLC55_16885 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal LLC55_16885 IPR006094 FAD linked oxidase, N-terminal LLC55_16885 IPR016167 FAD-binding, type PCMH, subdomain 1 LLC55_16885 IPR036318 FAD-binding, type PCMH-like superfamily LLC55_16885 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase LLC55_16885 IPR016166 FAD-binding domain, PCMH-type LLC55_16890 IPR000620 EamA domain LLC55_16900 IPR001598 Transposase, IS30, conserved site LLC55_16900 IPR036397 Ribonuclease H superfamily LLC55_16900 IPR012337 Ribonuclease H-like superfamily LLC55_16900 IPR001584 Integrase, catalytic core LLC55_16900 IPR009057 Homeobox-like domain superfamily LLC55_16915 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily LLC55_16915 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase LLC55_16920 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type LLC55_16920 IPR011005 Dihydropteroate synthase-like LLC55_16920 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial LLC55_16930 IPR011006 CheY-like superfamily LLC55_16930 IPR001789 Signal transduction response regulator, receiver domain LLC55_16945 IPR023319 Tex-like protein, HTH domain superfamily LLC55_16945 IPR037027 YqgF/RNase H-like domain superfamily LLC55_16945 IPR006641 YqgF/RNase H-like domain LLC55_16945 IPR032639 Tex protein, YqgF-like domain LLC55_16945 IPR018974 Tex-like protein, N-terminal LLC55_16945 IPR023323 Tex-like domain superfamily LLC55_16945 IPR012337 Ribonuclease H-like superfamily LLC55_16945 IPR022967 RNA-binding domain, S1 LLC55_16945 IPR010994 RuvA domain 2-like LLC55_16945 IPR012340 Nucleic acid-binding, OB-fold LLC55_16945 IPR041692 HHH domain 9 LLC55_16945 IPR003029 S1 domain LLC55_16955 IPR038010 YhfW, C-terminal Rieske domain LLC55_16955 IPR006076 FAD dependent oxidoreductase LLC55_16955 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_16955 IPR017941 Rieske [2Fe-2S] iron-sulphur domain LLC55_16955 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily LLC55_16955 IPR005805 Rieske iron-sulphur protein, C-terminal LLC55_16970 IPR000073 Alpha/beta hydrolase fold-1 LLC55_16970 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit LLC55_16970 IPR029058 Alpha/Beta hydrolase fold LLC55_16980 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase LLC55_16980 IPR000462 CDP-alcohol phosphatidyltransferase LLC55_16985 IPR011294 3-hydroxybutyrate dehydrogenase LLC55_16985 IPR036291 NAD(P)-binding domain superfamily LLC55_16985 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_16985 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_17025 IPR005177 Bifunctional kinase-pyrophosphorylase LLC55_17025 IPR026530 Phosphoenolpyruvate synthase regulatory protein LLC55_17030 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_17030 IPR040442 Pyruvate kinase-like domain superfamily LLC55_17030 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding LLC55_17030 IPR023151 PEP-utilising enzyme, conserved site LLC55_17030 IPR036637 Phosphohistidine domain superfamily LLC55_17030 IPR018274 PEP-utilising enzyme, active site LLC55_17030 IPR006319 Phosphoenolpyruvate synthase LLC55_17030 IPR008279 PEP-utilising enzyme, mobile domain LLC55_17030 IPR013815 ATP-grasp fold, subdomain 1 LLC55_17030 IPR000121 PEP-utilising enzyme, C-terminal LLC55_17035 IPR008910 Conserved TM helix LLC55_17035 IPR023408 Mechanosensitive ion channel MscS domain superfamily LLC55_17035 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 LLC55_17035 IPR006686 Mechanosensitive ion channel MscS, conserved site LLC55_17035 IPR006685 Mechanosensitive ion channel MscS LLC55_17035 IPR010920 LSM domain superfamily LLC55_17035 IPR011066 Mechanosensitive ion channel MscS, C-terminal LLC55_17040 IPR036397 Ribonuclease H superfamily LLC55_17040 IPR013520 Exonuclease, RNase T/DNA polymerase III LLC55_17040 IPR022894 Oligoribonuclease LLC55_17040 IPR012337 Ribonuclease H-like superfamily LLC55_17045 IPR016193 Cytidine deaminase-like LLC55_17045 IPR028883 tRNA-specific adenosine deaminase LLC55_17045 IPR016192 APOBEC/CMP deaminase, zinc-binding LLC55_17045 IPR002125 Cytidine and deoxycytidylate deaminase domain LLC55_17050 IPR022689 Iron dependent repressor LLC55_17050 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17050 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily LLC55_17050 IPR022687 DTXR-type HTH domain LLC55_17050 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17050 IPR001367 Iron dependent repressor, metal binding and dimerisation domain LLC55_17055 IPR001046 NRAMP family LLC55_17080 IPR004630 Uncharacterised protein family UPF0324, bacteria LLC55_17080 IPR018383 Uncharacterised protein family UPF0324, prokaryote LLC55_17090 IPR036291 NAD(P)-binding domain superfamily LLC55_17090 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_17105 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain LLC55_17105 IPR005119 LysR, substrate-binding LLC55_17105 IPR000847 Transcription regulator HTH, LysR LLC55_17105 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17105 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17110 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LLC55_17110 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal LLC55_17110 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 LLC55_17110 IPR002128 NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal LLC55_17110 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup LLC55_17115 IPR018752 Uncharacterised protein family UPF0753 LLC55_17120 IPR029062 Class I glutamine amidotransferase-like LLC55_17120 IPR017926 Glutamine amidotransferase LLC55_17120 IPR001674 GMP synthase, C-terminal LLC55_17120 IPR004739 GMP synthase, glutamine amidotransferase LLC55_17120 IPR022955 GMP synthase LLC55_17120 IPR025777 GMP synthetase ATP pyrophosphatase domain LLC55_17120 IPR022310 NAD/GMP synthase LLC55_17120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_17125 IPR015875 IMP dehydrogenase / GMP reductase, conserved site LLC55_17125 IPR013785 Aldolase-type TIM barrel LLC55_17125 IPR000644 CBS domain LLC55_17125 IPR005990 Inosine-5'-monophosphate dehydrogenase LLC55_17125 IPR001093 IMP dehydrogenase/GMP reductase LLC55_17130 IPR036291 NAD(P)-binding domain superfamily LLC55_17130 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LLC55_17130 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase LLC55_17130 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site LLC55_17130 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LLC55_17150 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type LLC55_17150 IPR005835 Nucleotidyl transferase domain LLC55_17150 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_17155 IPR036291 NAD(P)-binding domain superfamily LLC55_17155 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain LLC55_17155 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_17160 IPR000715 Glycosyl transferase, family 4 LLC55_17165 IPR019734 Tetratricopeptide repeat LLC55_17165 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_17165 IPR013026 Tetratricopeptide repeat-containing domain LLC55_17165 IPR030865 Lipopolysaccharide assembly protein B LLC55_17165 IPR041166 LapB, rubredoxin metal binding domain LLC55_17175 IPR000119 Histone-like DNA-binding protein LLC55_17175 IPR020816 Histone-like DNA-binding protein, conserved site LLC55_17175 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily LLC55_17175 IPR005685 Integration host factor, beta subunit LLC55_17180 IPR012340 Nucleic acid-binding, OB-fold LLC55_17180 IPR000110 Ribosomal protein S1 LLC55_17180 IPR022967 RNA-binding domain, S1 LLC55_17180 IPR003029 S1 domain LLC55_17185 IPR003136 Cytidylate kinase LLC55_17185 IPR011994 Cytidylate kinase domain LLC55_17185 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_17190 IPR000473 Ribosomal protein L36 LLC55_17190 IPR035977 Ribosomal protein L36 superfamily LLC55_17200 IPR017754 Agmatine deiminase LLC55_17200 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type LLC55_17210 IPR001110 Uncharacterised protein family UPF0012, conserved site LLC55_17210 IPR003010 Carbon-nitrogen hydrolase LLC55_17210 IPR036526 Carbon-nitrogen hydrolase superfamily LLC55_17215 IPR016181 Acyl-CoA N-acyltransferase LLC55_17215 IPR000182 GNAT domain LLC55_17235 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_17235 IPR035906 MetI-like superfamily LLC55_17240 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_17240 IPR035906 MetI-like superfamily LLC55_17260 IPR000843 LacI-type HTH domain LLC55_17260 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_17260 IPR028082 Periplasmic binding protein-like I LLC55_17270 IPR011008 Dimeric alpha-beta barrel LLC55_17270 IPR005545 YCII-related LLC55_17275 IPR003768 Segregation and condensation protein A LLC55_17280 IPR005234 Chromosome segregation/condensation protein ScpB LLC55_17280 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17280 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17285 IPR002942 RNA-binding S4 domain LLC55_17285 IPR036986 RNA-binding S4 domain superfamily LLC55_17285 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LLC55_17285 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LLC55_17285 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_17285 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_17285 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LLC55_17305 IPR003010 Carbon-nitrogen hydrolase LLC55_17305 IPR036526 Carbon-nitrogen hydrolase superfamily LLC55_17305 IPR001110 Uncharacterised protein family UPF0012, conserved site LLC55_17310 IPR004839 Aminotransferase, class I/classII LLC55_17310 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_17310 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_17310 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_17315 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_17315 IPR005895 ABC transporter, haem export, CcmA LLC55_17315 IPR003593 AAA+ ATPase domain LLC55_17315 IPR003439 ABC transporter-like LLC55_17315 IPR017871 ABC transporter, conserved site LLC55_17320 IPR003544 Cytochrome c-type biogenesis protein CcmB LLC55_17320 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria LLC55_17325 IPR002541 Cytochrome c assembly protein LLC55_17325 IPR003557 Cytochrome c-type biogenesis protein CcmC LLC55_17335 IPR004329 CcmE/CycJ protein LLC55_17335 IPR036127 CcmE-like superfamily LLC55_17340 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal LLC55_17340 IPR002541 Cytochrome c assembly protein LLC55_17340 IPR003567 Cytochrome c-type biogenesis protein LLC55_17340 IPR003568 Cytochrome c-type biogenesis protein CcmF LLC55_17345 IPR013766 Thioredoxin domain LLC55_17345 IPR017937 Thioredoxin, conserved site LLC55_17345 IPR013740 Redoxin LLC55_17345 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE LLC55_17345 IPR036249 Thioredoxin-like superfamily LLC55_17350 IPR005616 CcmH/CycL/Ccl2/NrfF family LLC55_17350 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily LLC55_17355 IPR017560 Cytochrome c-type biogenesis protein CcmI LLC55_17355 IPR013026 Tetratricopeptide repeat-containing domain LLC55_17355 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_17355 IPR019734 Tetratricopeptide repeat LLC55_17375 IPR016166 FAD-binding domain, PCMH-type LLC55_17375 IPR036318 FAD-binding, type PCMH-like superfamily LLC55_17375 IPR004113 FAD-linked oxidase, C-terminal LLC55_17375 IPR016164 FAD-linked oxidase-like, C-terminal LLC55_17375 IPR006094 FAD linked oxidase, N-terminal LLC55_17375 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 LLC55_17375 IPR004490 Glycolate oxidase subunit GlcD LLC55_17380 IPR036291 NAD(P)-binding domain superfamily LLC55_17380 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 LLC55_17380 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LLC55_17380 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLC55_17380 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site LLC55_17380 IPR002912 ACT domain LLC55_17390 IPR004758 Amino acid transporter LLC55_17390 IPR002293 Amino acid/polyamine transporter I LLC55_17395 IPR002293 Amino acid/polyamine transporter I LLC55_17395 IPR004758 Amino acid transporter LLC55_17400 IPR017714 Methylthioribulose-1-phosphate dehydratase LLC55_17400 IPR036409 Class II aldolase/adducin N-terminal domain superfamily LLC55_17400 IPR001303 Class II aldolase/adducin N-terminal LLC55_17405 IPR011051 RmlC-like cupin domain superfamily LLC55_17405 IPR014710 RmlC-like jelly roll fold LLC55_17405 IPR004313 Acireductone dioxygenase ARD family LLC55_17405 IPR023956 Acireductone dioxygenase ARD, bacteria LLC55_17410 IPR023214 HAD superfamily LLC55_17410 IPR006439 HAD hydrolase, subfamily IA LLC55_17410 IPR036412 HAD-like superfamily LLC55_17410 IPR023943 Enolase-phosphatase E1 LLC55_17435 IPR005042 TAL effector repeat LLC55_17450 IPR005042 TAL effector repeat LLC55_17465 IPR005042 TAL effector repeat LLC55_17485 IPR000847 Transcription regulator HTH, LysR LLC55_17485 IPR005119 LysR, substrate-binding LLC55_17485 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17485 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17490 IPR029039 Flavoprotein-like superfamily LLC55_17490 IPR003680 Flavodoxin-like fold LLC55_17490 IPR023048 NADH-azoreductase, FMN-dependent LLC55_17495 IPR002559 Transposase, IS4-like LLC55_17495 IPR008490 Transposase InsH, N-terminal LLC55_17515 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm LLC55_17515 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily LLC55_17515 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) LLC55_17515 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_17515 IPR002317 Serine-tRNA ligase, type1 LLC55_17515 IPR015866 Serine-tRNA synthetase, type1, N-terminal LLC55_17515 IPR033729 Serine-tRNA ligase catalytic core domain LLC55_17520 IPR006260 TonB/TolA, C-terminal LLC55_17520 IPR037682 TonB, C-terminal LLC55_17545 IPR002559 Transposase, IS4-like LLC55_17545 IPR008490 Transposase InsH, N-terminal LLC55_17595 IPR002559 Transposase, IS4-like LLC55_17595 IPR008490 Transposase InsH, N-terminal LLC55_17605 IPR002559 Transposase, IS4-like LLC55_17605 IPR008490 Transposase InsH, N-terminal LLC55_17615 IPR008220 Homoserine/serine acetyltransferase MetX-like LLC55_17615 IPR000073 Alpha/beta hydrolase fold-1 LLC55_17615 IPR029058 Alpha/Beta hydrolase fold LLC55_17630 IPR001207 Transposase, mutator type LLC55_17650 IPR008490 Transposase InsH, N-terminal LLC55_17650 IPR002559 Transposase, IS4-like LLC55_17660 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_17660 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB LLC55_17660 IPR029028 Alpha/beta knot methyltransferases LLC55_17660 IPR029064 50S ribosomal protein L30e-like LLC55_17660 IPR004441 RNA methyltransferase TrmH family LLC55_17660 IPR001537 tRNA/rRNA methyltransferase, SpoU type LLC55_17660 IPR013123 RNA 2-O ribose methyltransferase, substrate binding LLC55_17680 IPR011129 Cold shock domain LLC55_17680 IPR040476 RNase II/RNase R, cold shock domain LLC55_17680 IPR012340 Nucleic acid-binding, OB-fold LLC55_17680 IPR013223 Ribonuclease B, N-terminal OB domain LLC55_17680 IPR001900 Ribonuclease II/R LLC55_17680 IPR022966 Ribonuclease II/R, conserved site LLC55_17680 IPR004476 Ribonuclease II/ribonuclease R LLC55_17680 IPR011805 Ribonuclease R LLC55_17680 IPR013668 Ribonuclease R winged-helix domain LLC55_17680 IPR022967 RNA-binding domain, S1 LLC55_17680 IPR003029 S1 domain LLC55_17705 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LLC55_17705 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LLC55_17705 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LLC55_17705 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LLC55_17705 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LLC55_17705 IPR006089 Acyl-CoA dehydrogenase, conserved site LLC55_17705 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LLC55_17710 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_17710 IPR023576 UbiE/COQ5 methyltransferase, conserved site LLC55_17710 IPR004033 UbiE/COQ5 methyltransferase LLC55_17715 IPR003726 Homocysteine-binding domain LLC55_17715 IPR036589 Homocysteine-binding domain superfamily LLC55_17715 IPR000489 Pterin-binding domain LLC55_17715 IPR011005 Dihydropteroate synthase-like LLC55_17720 IPR004223 Vitamin B12-dependent methionine synthase, activation domain LLC55_17720 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain LLC55_17720 IPR006158 Cobalamin (vitamin B12)-binding domain LLC55_17720 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily LLC55_17720 IPR011005 Dihydropteroate synthase-like LLC55_17720 IPR003726 Homocysteine-binding domain LLC55_17720 IPR036589 Homocysteine-binding domain superfamily LLC55_17720 IPR033706 Methionine synthase, B12-binding domain LLC55_17720 IPR011822 Cobalamin-dependent methionine synthase LLC55_17720 IPR036594 Methionine synthase domain LLC55_17720 IPR000489 Pterin-binding domain LLC55_17720 IPR036724 Cobalamin-binding domain superfamily LLC55_17730 IPR011611 Carbohydrate kinase PfkB LLC55_17730 IPR002139 Ribokinase/fructokinase LLC55_17730 IPR029056 Ribokinase-like LLC55_17730 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LLC55_17735 IPR005964 Bacterial glucose/galactose transporter LLC55_17735 IPR036259 MFS transporter superfamily LLC55_17735 IPR011701 Major facilitator superfamily LLC55_17740 IPR010982 Lambda repressor-like, DNA-binding domain superfamily LLC55_17740 IPR000843 LacI-type HTH domain LLC55_17740 IPR028082 Periplasmic binding protein-like I LLC55_17740 IPR023588 Transcription regulator HTH, PurR LLC55_17755 IPR007236 SlyX LLC55_17760 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation LLC55_17760 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal LLC55_17760 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal LLC55_17760 IPR017476 UDP-glucose/GDP-mannose dehydrogenase LLC55_17760 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_17760 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type LLC55_17760 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily LLC55_17760 IPR036291 NAD(P)-binding domain superfamily LLC55_17765 IPR008104 Macrophage infectivity potentiator LLC55_17765 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain LLC55_17765 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal LLC55_17765 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily LLC55_17775 IPR029760 Glutathione peroxidase conserved site LLC55_17775 IPR036249 Thioredoxin-like superfamily LLC55_17775 IPR000889 Glutathione peroxidase LLC55_17775 IPR029759 Glutathione peroxidase active site LLC55_17785 IPR000524 Transcription regulator HTH, GntR LLC55_17785 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17785 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17790 IPR003593 AAA+ ATPase domain LLC55_17790 IPR003439 ABC transporter-like LLC55_17790 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_17815 IPR022761 Fumarate lyase, N-terminal LLC55_17815 IPR008948 L-Aspartase-like LLC55_17815 IPR000362 Fumarate lyase family LLC55_17815 IPR020557 Fumarate lyase, conserved site LLC55_17815 IPR024083 Fumarase/histidase, N-terminal LLC55_17815 IPR005677 Fumarate hydratase, class II LLC55_17815 IPR018951 Fumarase C, C-terminal LLC55_17845 IPR024083 Fumarase/histidase, N-terminal LLC55_17845 IPR020557 Fumarate lyase, conserved site LLC55_17845 IPR000362 Fumarate lyase family LLC55_17845 IPR022761 Fumarate lyase, N-terminal LLC55_17845 IPR008948 L-Aspartase-like LLC55_17845 IPR004769 Adenylosuccinate lyase LLC55_17845 IPR013539 Adenylosuccinate lyase PurB, C-terminal LLC55_17865 IPR039994 JmjC domain-containing LLC55_17865 IPR003347 JmjC domain LLC55_17875 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal LLC55_17875 IPR001017 Dehydrogenase, E1 component LLC55_17875 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily LLC55_17875 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain LLC55_17875 IPR029061 Thiamin diphosphate-binding fold LLC55_17875 IPR011603 2-oxoglutarate dehydrogenase E1 component LLC55_17875 IPR005475 Transketolase-like, pyrimidine-binding domain LLC55_17880 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site LLC55_17880 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain LLC55_17880 IPR000089 Biotin/lipoyl attachment LLC55_17880 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily LLC55_17880 IPR036625 E3-binding domain superfamily LLC55_17880 IPR004167 Peripheral subunit-binding domain LLC55_17880 IPR011053 Single hybrid motif LLC55_17880 IPR006255 Dihydrolipoamide succinyltransferase LLC55_17885 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site LLC55_17885 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLC55_17885 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I LLC55_17885 IPR006258 Dihydrolipoamide dehydrogenase LLC55_17885 IPR023753 FAD/NAD(P)-binding domain LLC55_17885 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_17885 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily LLC55_17890 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG LLC55_17890 IPR031100 LOG family LLC55_17895 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_17895 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site LLC55_17895 IPR036956 Impact, N-terminal domain superfamily LLC55_17895 IPR023582 Impact family LLC55_17895 IPR035647 EF-G domain III/V-like LLC55_17895 IPR001498 Impact, N-terminal LLC55_17900 IPR011917 ABC transporter, lipid A export, MsbA LLC55_17900 IPR003593 AAA+ ATPase domain LLC55_17900 IPR011527 ABC transporter type 1, transmembrane domain LLC55_17900 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_17900 IPR003439 ABC transporter-like LLC55_17900 IPR017871 ABC transporter, conserved site LLC55_17900 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_17900 IPR039421 Type I protein exporter LLC55_17925 IPR036291 NAD(P)-binding domain superfamily LLC55_17925 IPR011277 Chorismate mutase, T-protein LLC55_17925 IPR036263 Chorismate mutase type II superfamily LLC55_17925 IPR036979 Chorismate mutase domain superfamily LLC55_17925 IPR003099 Prephenate dehydrogenase LLC55_17925 IPR002701 Chorismate mutase II, prokaryotic-type LLC55_17925 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_17925 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein LLC55_17930 IPR023479 Pyridoxine/pyridoxal/pyridoxamine kinase LLC55_17930 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase LLC55_17930 IPR004625 Pyridoxine kinase LLC55_17930 IPR029056 Ribokinase-like LLC55_17935 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily LLC55_17935 IPR012724 Chaperone DnaJ LLC55_17935 IPR002939 Chaperone DnaJ, C-terminal LLC55_17935 IPR001623 DnaJ domain LLC55_17935 IPR008971 HSP40/DnaJ peptide-binding LLC55_17935 IPR001305 Heat shock protein DnaJ, cysteine-rich domain LLC55_17935 IPR036869 Chaperone J-domain superfamily LLC55_17940 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily LLC55_17940 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily LLC55_17940 IPR013126 Heat shock protein 70 family LLC55_17940 IPR012725 Chaperone DnaK LLC55_17940 IPR018181 Heat shock protein 70, conserved site LLC55_17945 IPR000740 GrpE nucleotide exchange factor LLC55_17945 IPR013805 GrpE nucleotide exchange factor, coiled-coil LLC55_17945 IPR009012 GrpE nucleotide exchange factor, head LLC55_17950 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17950 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily LLC55_17950 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17950 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain LLC55_17950 IPR002571 Heat-inducible transcription repressor HrcA LLC55_17950 IPR029016 GAF-like domain superfamily LLC55_17950 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal LLC55_17955 IPR004604 DNA recombination/repair protein RecN LLC55_17955 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_17955 IPR003395 RecF/RecN/SMC, N-terminal LLC55_17960 IPR002481 Ferric-uptake regulator LLC55_17960 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_17960 IPR036390 Winged helix DNA-binding domain superfamily LLC55_17965 IPR026592 Outer membrane protein assembly factor BamE LLC55_17965 IPR037873 BamE-like LLC55_17965 IPR007450 Lipoprotein SmpA/OmlA LLC55_17970 IPR037021 RnfH superfamily LLC55_17970 IPR005346 RnfH protein LLC55_17970 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp LLC55_17975 IPR005031 Coenzyme Q-binding protein COQ10, START domain LLC55_17975 IPR023393 START-like domain superfamily LLC55_17980 IPR023620 Small protein B LLC55_17980 IPR000037 SsrA-binding protein LLC55_17980 IPR020081 SsrA-binding protein, conserved site LLC55_17995 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily LLC55_17995 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain LLC55_17995 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain LLC55_17995 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal LLC55_17995 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal LLC55_17995 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal LLC55_17995 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily LLC55_18005 IPR005477 Deoxyxylulose-5-phosphate synthase LLC55_18005 IPR029061 Thiamin diphosphate-binding fold LLC55_18005 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II LLC55_18005 IPR005475 Transketolase-like, pyrimidine-binding domain LLC55_18005 IPR020826 Transketolase binding site LLC55_18005 IPR033248 Transketolase, C-terminal domain LLC55_18005 IPR005474 Transketolase, N-terminal LLC55_18050 IPR004638 Drug resistance transporter EmrB-like LLC55_18050 IPR011701 Major facilitator superfamily LLC55_18050 IPR020846 Major facilitator superfamily domain LLC55_18050 IPR036259 MFS transporter superfamily LLC55_18055 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_18055 IPR005694 Efflux pump membrane protein LLC55_18060 IPR003423 Outer membrane efflux protein LLC55_18060 IPR010131 RND efflux system, outer membrane lipoprotein, NodT LLC55_18075 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat LLC55_18075 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal LLC55_18075 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LLC55_18075 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal LLC55_18075 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta LLC55_18075 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily LLC55_18075 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative LLC55_18080 IPR008331 Ferritin/DPS protein domain LLC55_18080 IPR009078 Ferritin-like superfamily LLC55_18080 IPR009040 Ferritin-like diiron domain LLC55_18080 IPR012347 Ferritin-like LLC55_18080 IPR002024 Bacterioferritin LLC55_18085 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_18085 IPR014395 Penicillin/GL-7-ACA/AHL acylase LLC55_18085 IPR023343 Penicillin amidase type, domain 1 LLC55_18085 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase LLC55_18090 IPR010105 TonB-dependent siderophore receptor LLC55_18090 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_18090 IPR039423 TonB-dependent receptor-like LLC55_18090 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_18090 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_18090 IPR012910 TonB-dependent receptor, plug domain LLC55_18090 IPR030148 Catecholate siderophore receptor Fiu LLC55_18100 IPR006426 Asparagine synthase, glutamine-hydrolyzing LLC55_18100 IPR001962 Asparagine synthase LLC55_18100 IPR033738 Asparagine synthase, N-terminal domain LLC55_18100 IPR017932 Glutamine amidotransferase type 2 domain LLC55_18100 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_18100 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_18105 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria LLC55_18105 IPR011650 Peptidase M20, dimerisation domain LLC55_18105 IPR036264 Bacterial exopeptidase dimerisation domain LLC55_18105 IPR002933 Peptidase M20 LLC55_18115 IPR006504 Transcriptional regulator Spx/MgsR LLC55_18115 IPR006660 Arsenate reductase-like LLC55_18115 IPR036249 Thioredoxin-like superfamily LLC55_18125 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family LLC55_18125 IPR001451 Hexapeptide repeat LLC55_18125 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 LLC55_18125 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily LLC55_18125 IPR011004 Trimeric LpxA-like superfamily LLC55_18130 IPR002934 Polymerase, nucleotidyl transferase domain LLC55_18130 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase LLC55_18130 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme LLC55_18130 IPR003607 HD/PDEase domain LLC55_18130 IPR006674 HD domain LLC55_18130 IPR002912 ACT domain LLC55_18135 IPR036005 Creatinase/aminopeptidase-like LLC55_18135 IPR000994 Peptidase M24 LLC55_18135 IPR001714 Peptidase M24, methionine aminopeptidase LLC55_18135 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 LLC55_18170 IPR001865 Ribosomal protein S2 LLC55_18170 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid LLC55_18170 IPR018130 Ribosomal protein S2, conserved site LLC55_18170 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily LLC55_18175 IPR009060 UBA-like superfamily LLC55_18175 IPR018101 Translation elongation factor Ts, conserved site LLC55_18175 IPR001816 Translation elongation factor EFTs/EF1B LLC55_18175 IPR036402 Elongation factor Ts, dimerisation domain superfamily LLC55_18175 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation LLC55_18185 IPR036393 Acetylglutamate kinase-like superfamily LLC55_18185 IPR001048 Aspartate/glutamate/uridylate kinase LLC55_18185 IPR011817 Uridylate kinase LLC55_18185 IPR015963 Uridylate kinase, bacteria LLC55_18190 IPR002661 Ribosome recycling factor LLC55_18190 IPR023584 Ribosome recycling factor domain LLC55_18190 IPR036191 RRF superfamily LLC55_18195 IPR001441 Decaprenyl diphosphate synthase-like LLC55_18195 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site LLC55_18195 IPR036424 Decaprenyl diphosphate synthase-like superfamily LLC55_18200 IPR000374 Phosphatidate cytidylyltransferase LLC55_18205 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal LLC55_18205 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase LLC55_18205 IPR036291 NAD(P)-binding domain superfamily LLC55_18205 IPR036169 DXP reductoisomerase, C-terminal domain superfamily LLC55_18205 IPR026877 DXP reductoisomerase C-terminal domain LLC55_18205 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal LLC55_18210 IPR001478 PDZ domain LLC55_18210 IPR041489 PDZ domain 6 LLC55_18210 IPR036034 PDZ superfamily LLC55_18210 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase LLC55_18210 IPR008915 Peptidase M50 LLC55_18215 IPR000184 Bacterial surface antigen (D15) LLC55_18215 IPR010827 POTRA domain, BamA/TamA-like LLC55_18215 IPR039910 Surface antigen D15-like LLC55_18215 IPR023707 Outer membrane protein assembly factor BamA LLC55_18215 IPR034746 POTRA domain LLC55_18225 IPR011004 Trimeric LpxA-like superfamily LLC55_18225 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region LLC55_18225 IPR001451 Hexapeptide repeat LLC55_18225 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD LLC55_18230 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ LLC55_18230 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ LLC55_18230 IPR029069 HotDog domain superfamily LLC55_18235 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal LLC55_18235 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily LLC55_18235 IPR001451 Hexapeptide repeat LLC55_18235 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase LLC55_18235 IPR011004 Trimeric LpxA-like superfamily LLC55_18240 IPR003835 Glycosyl transferase, family 19 LLC55_18245 IPR036397 Ribonuclease H superfamily LLC55_18245 IPR022898 Ribonuclease HII LLC55_18245 IPR001352 Ribonuclease HII/HIII LLC55_18245 IPR024567 Ribonuclease HII/HIII domain LLC55_18245 IPR012337 Ribonuclease H-like superfamily LLC55_18250 IPR016195 Polymerase/histidinol phosphatase-like LLC55_18250 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain LLC55_18250 IPR012340 Nucleic acid-binding, OB-fold LLC55_18250 IPR029460 DNA polymerase, helix-hairpin-helix motif LLC55_18250 IPR040982 DNA polymerase III alpha subunit finger domain LLC55_18250 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain LLC55_18250 IPR003141 Polymerase/histidinol phosphatase, N-terminal LLC55_18250 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type LLC55_18250 IPR004013 PHP domain LLC55_18250 IPR004805 DNA polymerase III, alpha subunit LLC55_18255 IPR029045 ClpP/crotonase-like domain superfamily LLC55_18255 IPR001095 Acetyl-CoA carboxylase, alpha subunit LLC55_18255 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal LLC55_18265 IPR010916 TonB box, conserved site LLC55_18265 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_18265 IPR010917 TonB-dependent receptor, conserved site LLC55_18265 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_18265 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_18265 IPR012910 TonB-dependent receptor, plug domain LLC55_18265 IPR039426 Vitamin B12 transporter BtuB-like LLC55_18270 IPR025302 Domain of unknown function DUF4162 LLC55_18270 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_18270 IPR003439 ABC transporter-like LLC55_18270 IPR017871 ABC transporter, conserved site LLC55_18270 IPR003593 AAA+ ATPase domain LLC55_18295 IPR005265 Protoporphyrinogen oxidase HemJ-like LLC55_18345 IPR026017 Lumazine-binding domain LLC55_18345 IPR017938 Riboflavin synthase-like beta-barrel LLC55_18345 IPR001783 Lumazine-binding protein LLC55_18345 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily LLC55_18350 IPR032677 GTP cyclohydrolase II LLC55_18350 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily LLC55_18350 IPR036144 RibA-like superfamily LLC55_18350 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB LLC55_18355 IPR034964 Lumazine synthase LLC55_18355 IPR002180 Lumazine/riboflavin synthase LLC55_18355 IPR036467 Lumazine/riboflavin synthase superfamily LLC55_18360 IPR011605 NusB antitermination factor LLC55_18360 IPR035926 NusB-like superfamily LLC55_18360 IPR006027 NusB/RsmB/TIM44 LLC55_18365 IPR010918 PurM-like, C-terminal domain LLC55_18365 IPR036676 PurM-like, C-terminal domain superfamily LLC55_18365 IPR016188 PurM-like, N-terminal domain LLC55_18365 IPR006283 Thiamine-monophosphate kinase LLC55_18365 IPR036921 PurM-like, N-terminal domain superfamily LLC55_18385 IPR004623 Potassium-transporting ATPase A chain LLC55_18385 IPR023298 P-type ATPase, transmembrane domain superfamily LLC55_18390 IPR008250 P-type ATPase, A domain superfamily LLC55_18390 IPR018303 P-type ATPase, phosphorylation site LLC55_18390 IPR006391 P-type ATPase, B chain, subfamily IA LLC55_18390 IPR001757 P-type ATPase LLC55_18390 IPR023299 P-type ATPase, cytoplasmic domain N LLC55_18390 IPR023298 P-type ATPase, transmembrane domain superfamily LLC55_18390 IPR036412 HAD-like superfamily LLC55_18395 IPR003820 Potassium-transporting ATPase C chain LLC55_18400 IPR038318 KdpD, transmembrane domain superfamily LLC55_18400 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_18400 IPR003018 GAF domain LLC55_18400 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal LLC55_18400 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_18400 IPR029016 GAF-like domain superfamily LLC55_18400 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_18400 IPR005467 Histidine kinase domain LLC55_18400 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_18400 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_18400 IPR025201 Sensor protein KdpD, transmembrane domain LLC55_18405 IPR011006 CheY-like superfamily LLC55_18405 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_18405 IPR001789 Signal transduction response regulator, receiver domain LLC55_18405 IPR039420 Transcriptional regulatory protein WalR-like LLC55_18405 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_18410 IPR016164 FAD-linked oxidase-like, C-terminal LLC55_18410 IPR004113 FAD-linked oxidase, C-terminal LLC55_18410 IPR004490 Glycolate oxidase subunit GlcD LLC55_18410 IPR006094 FAD linked oxidase, N-terminal LLC55_18410 IPR016166 FAD-binding domain, PCMH-type LLC55_18410 IPR036318 FAD-binding, type PCMH-like superfamily LLC55_18410 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 LLC55_18415 IPR007404 LexA-binding, inner membrane-associated putative hydrolase LLC55_18420 IPR003509 Uncharacterised protein family UPF0102 LLC55_18420 IPR011856 tRNA endonuclease-like domain superfamily LLC55_18420 IPR011335 Restriction endonuclease type II-like LLC55_18430 IPR000878 Tetrapyrrole methylase LLC55_18430 IPR018063 SAM-dependent methyltransferase RsmI, conserved site LLC55_18430 IPR008189 rRNA small subunit methyltransferase I LLC55_18430 IPR014776 Tetrapyrrole methylase, subdomain 2 LLC55_18430 IPR014777 Tetrapyrrole methylase, subdomain 1 LLC55_18430 IPR035996 Tetrapyrrole methylase superfamily LLC55_18450 IPR035642 MraZ, N-terminal LLC55_18450 IPR035644 MraZ, C-terminal LLC55_18450 IPR037914 SpoVT-AbrB domain superfamily LLC55_18450 IPR007159 SpoVT-AbrB domain LLC55_18450 IPR038619 MraZ superfamily LLC55_18450 IPR003444 Transcriptional regulator MraZ LLC55_18450 IPR020603 MraZ domain LLC55_18455 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily LLC55_18455 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_18455 IPR002903 Ribosomal RNA small subunit methyltransferase H LLC55_18460 IPR011922 Cell division protein FtsL LLC55_18465 IPR012338 Beta-lactamase/transpeptidase-like LLC55_18465 IPR037532 Peptidoglycan D,D-transpeptidase FtsI LLC55_18465 IPR005311 Penicillin-binding protein, dimerisation domain LLC55_18465 IPR036138 Penicillin-binding protein, dimerisation domain superfamily LLC55_18465 IPR001460 Penicillin-binding protein, transpeptidase LLC55_18470 IPR036565 Mur-like, catalytic domain superfamily LLC55_18470 IPR036615 Mur ligase, C-terminal domain superfamily LLC55_18470 IPR013221 Mur ligase, central LLC55_18470 IPR000713 Mur ligase, N-terminal catalytic domain LLC55_18470 IPR035911 MurE/MurF, N-terminal LLC55_18470 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase LLC55_18470 IPR004101 Mur ligase, C-terminal LLC55_18475 IPR035911 MurE/MurF, N-terminal LLC55_18475 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase LLC55_18475 IPR000713 Mur ligase, N-terminal catalytic domain LLC55_18475 IPR036615 Mur ligase, C-terminal domain superfamily LLC55_18475 IPR004101 Mur ligase, C-terminal LLC55_18475 IPR036565 Mur-like, catalytic domain superfamily LLC55_18475 IPR013221 Mur ligase, central LLC55_18480 IPR000715 Glycosyl transferase, family 4 LLC55_18480 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase LLC55_18480 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site LLC55_18485 IPR013437 Probable peptidoglycan glycosyltransferase FtsW LLC55_18485 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA LLC55_18490 IPR004276 Glycosyltransferase family 28, N-terminal domain LLC55_18490 IPR007235 Glycosyl transferase, family 28, C-terminal LLC55_18490 IPR006009 N-acetylglucosaminyltransferase, MurG LLC55_18495 IPR036565 Mur-like, catalytic domain superfamily LLC55_18495 IPR004101 Mur ligase, C-terminal LLC55_18495 IPR036615 Mur ligase, C-terminal domain superfamily LLC55_18495 IPR013221 Mur ligase, central LLC55_18495 IPR000713 Mur ligase, N-terminal catalytic domain LLC55_18495 IPR005758 UDP-N-acetylmuramate--L-alanine ligase LLC55_18500 IPR016185 Pre-ATP-grasp domain superfamily LLC55_18500 IPR011095 D-alanine--D-alanine ligase, C-terminal LLC55_18500 IPR011127 D-alanine--D-alanine ligase, N-terminal domain LLC55_18500 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site LLC55_18500 IPR013815 ATP-grasp fold, subdomain 1 LLC55_18500 IPR011761 ATP-grasp fold LLC55_18500 IPR005905 D-alanine--D-alanine ligase LLC55_18505 IPR005548 Cell division protein FtsQ/DivIB LLC55_18505 IPR026579 Cell division protein FtsQ LLC55_18505 IPR034746 POTRA domain LLC55_18505 IPR013685 POTRA domain, FtsQ-type LLC55_18510 IPR020823 Cell division protein FtsA LLC55_18510 IPR003494 SHS2 domain inserted in FtsA LLC55_18515 IPR003008 Tubulin/FtsZ, GTPase domain LLC55_18515 IPR036525 Tubulin/FtsZ, GTPase domain superfamily LLC55_18515 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain LLC55_18515 IPR020805 Cell division protein FtsZ, conserved site LLC55_18515 IPR024757 Cell division protein FtsZ, C-terminal LLC55_18515 IPR000158 Cell division protein FtsZ LLC55_18515 IPR008280 Tubulin/FtsZ, C-terminal LLC55_18520 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_18520 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase LLC55_18520 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal LLC55_18520 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal LLC55_18530 IPR016047 Peptidase M23 LLC55_18530 IPR011055 Duplicated hybrid motif LLC55_18530 IPR018392 LysM domain LLC55_18530 IPR036779 LysM domain superfamily LLC55_18535 IPR036670 SecA, preprotein cross-linking domain superfamily LLC55_18535 IPR011116 SecA Wing/Scaffold LLC55_18535 IPR011130 SecA, preprotein cross-linking domain LLC55_18535 IPR014018 SecA motor DEAD LLC55_18535 IPR036266 SecA, Wing/Scaffold superfamily LLC55_18535 IPR020937 SecA conserved site LLC55_18535 IPR000185 Protein translocase subunit SecA LLC55_18535 IPR004027 SEC-C motif LLC55_18535 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_18535 IPR011115 SecA DEAD-like, N-terminal LLC55_18545 IPR020476 NUDIX hydrolase LLC55_18545 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_18545 IPR020084 NUDIX hydrolase, conserved site LLC55_18545 IPR000086 NUDIX hydrolase domain LLC55_18560 IPR029041 FAD-linked oxidoreductase-like LLC55_18560 IPR003171 Methylenetetrahydrofolate reductase LLC55_18560 IPR004620 5,10-methylenetetrahydrofolate reductase LLC55_18560 IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase LLC55_18570 IPR013968 Polyketide synthase, ketoreductase domain LLC55_18570 IPR016039 Thiolase-like LLC55_18570 IPR009081 Phosphopantetheine binding ACP domain LLC55_18570 IPR020806 Polyketide synthase, phosphopantetheine-binding domain LLC55_18570 IPR020843 Polyketide synthase, enoylreductase domain LLC55_18570 IPR042104 Polyketide synthase, dehydratase domain superfamily LLC55_18570 IPR020807 Polyketide synthase, dehydratase domain LLC55_18570 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain LLC55_18570 IPR032821 Ketoacyl-synthetase, C-terminal extension LLC55_18570 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding LLC55_18570 IPR036291 NAD(P)-binding domain superfamily LLC55_18570 IPR014031 Beta-ketoacyl synthase, C-terminal LLC55_18570 IPR018201 Beta-ketoacyl synthase, active site LLC55_18570 IPR011032 GroES-like superfamily LLC55_18570 IPR013154 Alcohol dehydrogenase, N-terminal LLC55_18570 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_18570 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase LLC55_18570 IPR014043 Acyl transferase LLC55_18570 IPR036736 ACP-like superfamily LLC55_18570 IPR014030 Beta-ketoacyl synthase, N-terminal LLC55_18570 IPR001227 Acyl transferase domain superfamily LLC55_18585 IPR036291 NAD(P)-binding domain superfamily LLC55_18585 IPR000683 Oxidoreductase, N-terminal LLC55_18625 IPR042172 Adenosylhomocysteinase-like superfamily LLC55_18625 IPR000043 Adenosylhomocysteinase-like LLC55_18625 IPR036291 NAD(P)-binding domain superfamily LLC55_18625 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site LLC55_18625 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LLC55_18635 IPR021135 Phosphoenolpyruvate carboxylase LLC55_18635 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type LLC55_18635 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site LLC55_18635 IPR033129 Phosphoenolpyruvate carboxylase, His active site LLC55_18635 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_18665 IPR033379 Histidine acid phosphatase active site LLC55_18665 IPR000560 Histidine phosphatase superfamily, clade-2 LLC55_18665 IPR029033 Histidine phosphatase superfamily LLC55_18675 IPR022636 S-adenosylmethionine synthetase superfamily LLC55_18675 IPR002133 S-adenosylmethionine synthetase LLC55_18675 IPR022630 S-adenosylmethionine synthetase, C-terminal LLC55_18675 IPR022629 S-adenosylmethionine synthetase, central domain LLC55_18675 IPR022631 S-adenosylmethionine synthetase, conserved site LLC55_18675 IPR022628 S-adenosylmethionine synthetase, N-terminal LLC55_18690 IPR013785 Aldolase-type TIM barrel LLC55_18690 IPR035587 DUS-like, FMN-binding domain LLC55_18690 IPR032887 tRNA-dihydrouridine synthase B LLC55_18690 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal LLC55_18690 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 LLC55_18690 IPR001269 tRNA-dihydrouridine synthase LLC55_18690 IPR018517 tRNA-dihydrouridine synthase, conserved site LLC55_18700 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site LLC55_18700 IPR011877 Ribokinase LLC55_18700 IPR011611 Carbohydrate kinase PfkB LLC55_18700 IPR002139 Ribokinase/fructokinase LLC55_18700 IPR029056 Ribokinase-like LLC55_18705 IPR011657 Concentrative nucleoside transporter C-terminal domain LLC55_18705 IPR008276 Concentrative nucleoside transporter LLC55_18705 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial LLC55_18705 IPR002668 Concentrative nucleoside transporter N-terminal domain LLC55_18705 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain LLC55_18715 IPR023210 NADP-dependent oxidoreductase domain LLC55_18715 IPR036812 NADP-dependent oxidoreductase domain superfamily LLC55_18765 IPR006189 CHASE domain LLC55_18765 IPR042098 Taurine dioxygenase TauD-like superfamily LLC55_18765 IPR003819 TauD/TfdA-like domain LLC55_18775 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_18775 IPR017871 ABC transporter, conserved site LLC55_18775 IPR003439 ABC transporter-like LLC55_18775 IPR003593 AAA+ ATPase domain LLC55_18780 IPR013830 SGNH hydrolase-type esterase domain LLC55_18780 IPR036514 SGNH hydrolase superfamily LLC55_18785 IPR011006 CheY-like superfamily LLC55_18785 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_18785 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_18785 IPR001789 Signal transduction response regulator, receiver domain LLC55_18785 IPR039420 Transcriptional regulatory protein WalR-like LLC55_18785 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_18790 IPR005467 Histidine kinase domain LLC55_18790 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_18790 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_18790 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_18790 IPR013727 Two-component sensor kinase, N-terminal LLC55_18790 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_18790 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_18805 IPR036945 Diacylglycerol kinase (DAGK) superfamily LLC55_18805 IPR033718 Diacylglycerol kinase, prokaryotic LLC55_18805 IPR000829 DAGK family LLC55_18825 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt LLC55_18830 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain LLC55_18830 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily LLC55_18830 IPR000398 Thymidylate synthase LLC55_18830 IPR020940 Thymidylate synthase, active site LLC55_18840 IPR012259 Dihydrofolate reductase LLC55_18840 IPR024072 Dihydrofolate reductase-like domain superfamily LLC55_18840 IPR001796 Dihydrofolate reductase domain LLC55_18840 IPR017925 Dihydrofolate reductase conserved site LLC55_18845 IPR029052 Metallo-dependent phosphatase-like LLC55_18845 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LLC55_18845 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) LLC55_18845 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase LLC55_18850 IPR007474 ApaG domain LLC55_18850 IPR036767 ApaG domain superfamily LLC55_18850 IPR023065 Uncharacterised protein family ApaG LLC55_18855 IPR011530 Ribosomal RNA adenine dimethylase LLC55_18855 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm LLC55_18855 IPR023165 rRNA adenine dimethylase-like LLC55_18855 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site LLC55_18855 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal LLC55_18855 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_18865 IPR005255 PdxA family LLC55_18865 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase LLC55_18870 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type LLC55_18870 IPR023034 Peptidyl-prolyl isomerase SurA LLC55_18870 IPR015391 SurA N-terminal LLC55_18870 IPR027304 Trigger factor/SurA domain superfamily LLC55_18875 IPR020889 LPS-assembly protein LptD LLC55_18875 IPR007543 LptD, C-terminal LLC55_18875 IPR005653 Organic solvent tolerance-like, N-terminal LLC55_18880 IPR000286 Histone deacetylase family LLC55_18880 IPR023801 Histone deacetylase domain LLC55_18880 IPR037138 Histone deacetylase domain superfamily LLC55_18880 IPR023696 Ureohydrolase domain superfamily LLC55_18885 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type LLC55_18885 IPR016030 Cobalamin adenosyltransferase-like LLC55_18885 IPR036451 Cobalamin adenosyltransferase-like superfamily LLC55_18895 IPR002938 FAD-binding domain LLC55_18895 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_18895 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site LLC55_18895 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase LLC55_18895 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 LLC55_18900 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site LLC55_18900 IPR002938 FAD-binding domain LLC55_18900 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_18900 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 LLC55_18930 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B LLC55_18930 IPR034937 Protocatechuate 4,5-dioxygenase beta chain LLC55_18940 IPR005119 LysR, substrate-binding LLC55_18940 IPR012787 Pca transcription factor PcaQ LLC55_18940 IPR000847 Transcription regulator HTH, LysR LLC55_18940 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_18940 IPR036390 Winged helix DNA-binding domain superfamily LLC55_18945 IPR025110 AMP-binding enzyme, C-terminal domain LLC55_18945 IPR020459 AMP-binding LLC55_18945 IPR020845 AMP-binding, conserved site LLC55_18945 IPR000873 AMP-dependent synthetase/ligase LLC55_18945 IPR042099 AMP-dependent synthetase-like superfamily LLC55_18950 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_18950 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_18950 IPR029510 Aldehyde dehydrogenase, glutamic acid active site LLC55_18950 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_18950 IPR015590 Aldehyde dehydrogenase domain LLC55_18955 IPR029045 ClpP/crotonase-like domain superfamily LLC55_18955 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_18955 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LLC55_18975 IPR013658 SMP-30/Gluconolactonase/LRE-like region LLC55_18975 IPR005511 Senescence marker protein-30 (SMP-30) LLC55_18975 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_18975 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_18980 IPR004104 Oxidoreductase, C-terminal LLC55_18980 IPR036291 NAD(P)-binding domain superfamily LLC55_18980 IPR000683 Oxidoreductase, N-terminal LLC55_18985 IPR002877 Ribosomal RNA methyltransferase FtsJ domain LLC55_18985 IPR011224 Ribosomal RNA large subunit methyltransferase M LLC55_18985 IPR040739 RlmM ferredoxin-like domain LLC55_18985 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_19040 IPR004514 Glutamine-tRNA synthetase LLC55_19040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_19040 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily LLC55_19040 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal LLC55_19040 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_19040 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain LLC55_19040 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain LLC55_19040 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily LLC55_19040 IPR022861 Glutamine-tRNA ligase, bacterial LLC55_19040 IPR000924 Glutamyl/glutaminyl-tRNA synthetase LLC55_19055 IPR001789 Signal transduction response regulator, receiver domain LLC55_19055 IPR029787 Nucleotide cyclase LLC55_19055 IPR000160 GGDEF domain LLC55_19055 IPR011006 CheY-like superfamily LLC55_19105 IPR013785 Aldolase-type TIM barrel LLC55_19105 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_19105 IPR023753 FAD/NAD(P)-binding domain LLC55_19105 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal LLC55_19110 IPR011032 GroES-like superfamily LLC55_19110 IPR013154 Alcohol dehydrogenase, N-terminal LLC55_19110 IPR036291 NAD(P)-binding domain superfamily LLC55_19110 IPR020843 Polyketide synthase, enoylreductase domain LLC55_19110 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site LLC55_19110 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 LLC55_19110 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_19115 IPR028974 TSP type-3 repeat LLC55_19115 IPR006690 Outer membrane protein, OmpA-like, conserved site LLC55_19115 IPR036737 OmpA-like domain superfamily LLC55_19115 IPR006665 OmpA-like domain LLC55_19115 IPR006664 Outer membrane protein, bacterial LLC55_19115 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel LLC55_19115 IPR008722 Outer membrane porin F, N-terminal LLC55_19125 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site LLC55_19125 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain LLC55_19125 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_19125 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_19125 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F LLC55_19135 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase LLC55_19135 IPR004839 Aminotransferase, class I/classII LLC55_19135 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_19135 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_19135 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_19135 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site LLC55_19140 IPR000957 Sulphate/thiosulphate-binding, conserved site LLC55_19140 IPR034408 Sulphate/thiosulphate-binding site LLC55_19140 IPR005669 Thiosulphate/Sulfate-binding protein LLC55_19145 IPR011865 Sulphate ABC transporter, permease protein CysT LLC55_19145 IPR035906 MetI-like superfamily LLC55_19145 IPR005667 Sulphate ABC transporter permease protein 2 LLC55_19145 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_19150 IPR000515 ABC transporter type 1, transmembrane domain MetI-like LLC55_19150 IPR035906 MetI-like superfamily LLC55_19150 IPR005667 Sulphate ABC transporter permease protein 2 LLC55_19150 IPR011866 Sulphate ABC transporter, permease protein CysW LLC55_19155 IPR003593 AAA+ ATPase domain LLC55_19155 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal LLC55_19155 IPR003439 ABC transporter-like LLC55_19155 IPR017871 ABC transporter, conserved site LLC55_19155 IPR041193 CysA, C-terminal regulatory domain LLC55_19155 IPR008995 Molybdate/tungstate binding, C-terminal LLC55_19155 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19155 IPR005666 Sulphate transport system permease protein 1 LLC55_19155 IPR024765 TOBE-like domain LLC55_19165 IPR020843 Polyketide synthase, enoylreductase domain LLC55_19165 IPR036291 NAD(P)-binding domain superfamily LLC55_19165 IPR004627 L-threonine 3-dehydrogenase LLC55_19165 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site LLC55_19165 IPR013154 Alcohol dehydrogenase, N-terminal LLC55_19165 IPR011032 GroES-like superfamily LLC55_19165 IPR013149 Alcohol dehydrogenase, C-terminal LLC55_19180 IPR019500 Peptidase S46 LLC55_19180 IPR009003 Peptidase S1, PA clan LLC55_19185 IPR013078 Histidine phosphatase superfamily, clade-1 LLC55_19185 IPR029033 Histidine phosphatase superfamily LLC55_19195 IPR036615 Mur ligase, C-terminal domain superfamily LLC55_19195 IPR004101 Mur ligase, C-terminal LLC55_19195 IPR036565 Mur-like, catalytic domain superfamily LLC55_19195 IPR018109 Folylpolyglutamate synthetase, conserved site LLC55_19195 IPR013221 Mur ligase, central LLC55_19195 IPR001645 Folylpolyglutamate synthetase LLC55_19210 IPR029057 Phosphoribosyltransferase-like LLC55_19210 IPR005854 Amidophosphoribosyltransferase LLC55_19210 IPR000836 Phosphoribosyltransferase domain LLC55_19210 IPR035584 Amidophosphoribosyltransferase, N-terminal LLC55_19210 IPR029055 Nucleophile aminohydrolases, N-terminal LLC55_19210 IPR017932 Glutamine amidotransferase type 2 domain LLC55_19215 IPR011197 Uncharacterised conserved protein UCP012318 LLC55_19215 IPR009078 Ferritin-like superfamily LLC55_19215 IPR007402 Protein of unknown function DUF455 LLC55_19235 IPR010138 UDP-2,3-diacylglucosamine hydrolase LLC55_19235 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type LLC55_19235 IPR029052 Metallo-dependent phosphatase-like LLC55_19240 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily LLC55_19240 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase LLC55_19245 IPR001296 Glycosyl transferase, family 1 LLC55_19245 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LLC55_19250 IPR030673 Pyrophosphatase, GppA/Ppx-type LLC55_19250 IPR022371 Exopolyphosphatase LLC55_19250 IPR003695 Ppx/GppA phosphatase LLC55_19255 IPR025200 Polyphosphate kinase C-terminal domain 2 LLC55_19255 IPR025198 Polyphosphate kinase N-terminal domain LLC55_19255 IPR036832 Polyphosphate kinase N-terminal domain superfamily LLC55_19255 IPR036830 Polyphosphate kinase middle domain superfamily LLC55_19255 IPR024953 Polyphosphate kinase middle domain LLC55_19255 IPR003414 Polyphosphate kinase LLC55_19255 IPR041108 Polyphosphate kinase, C-terminal domain 1 LLC55_19260 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR LLC55_19260 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_19260 IPR021766 Phosphate regulon sensor protein PhoR LLC55_19260 IPR013767 PAS fold LLC55_19260 IPR035965 PAS domain superfamily LLC55_19260 IPR000014 PAS domain LLC55_19260 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_19260 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_19260 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_19260 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_19260 IPR005467 Histidine kinase domain LLC55_19265 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB LLC55_19265 IPR001789 Signal transduction response regulator, receiver domain LLC55_19265 IPR039420 Transcriptional regulatory protein WalR-like LLC55_19265 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_19265 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_19265 IPR011006 CheY-like superfamily LLC55_19265 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_19270 IPR001915 Peptidase M48 LLC55_19270 IPR030873 Beta-barrel assembly-enhancing protease LLC55_19270 IPR013026 Tetratricopeptide repeat-containing domain LLC55_19270 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_19270 IPR019734 Tetratricopeptide repeat LLC55_19275 IPR011767 Glutaredoxin active site LLC55_19275 IPR002109 Glutaredoxin LLC55_19275 IPR014025 Glutaredoxin subgroup LLC55_19275 IPR011900 Glutaredoxin, GrxC LLC55_19275 IPR036249 Thioredoxin-like superfamily LLC55_19305 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily LLC55_19305 IPR002569 Peptide methionine sulphoxide reductase MsrA LLC55_19330 IPR018225 Transaldolase, active site LLC55_19330 IPR004730 Transaldolase type 1 LLC55_19330 IPR001585 Transaldolase/Fructose-6-phosphate aldolase LLC55_19330 IPR013785 Aldolase-type TIM barrel LLC55_19335 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily LLC55_19335 IPR018151 Transcription elongation factor, GreA/GreB, conserved site LLC55_19335 IPR006359 Transcription elongation factor GreA LLC55_19335 IPR028624 Transcription elongation factor GreA/GreB LLC55_19335 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal LLC55_19335 IPR023459 Transcription elongation factor GreA/GreB family LLC55_19335 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal LLC55_19335 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily LLC55_19340 IPR005119 LysR, substrate-binding LLC55_19340 IPR000847 Transcription regulator HTH, LysR LLC55_19340 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_19340 IPR036390 Winged helix DNA-binding domain superfamily LLC55_19345 IPR002109 Glutaredoxin LLC55_19345 IPR012336 Thioredoxin-like fold LLC55_19345 IPR036249 Thioredoxin-like superfamily LLC55_19345 IPR023753 FAD/NAD(P)-binding domain LLC55_19345 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site LLC55_19345 IPR012081 Alkyl hydroperoxide reductase subunit F LLC55_19345 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_19350 IPR017559 Alkyl hydroperoxide reductase subunit C LLC55_19350 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LLC55_19350 IPR024706 Peroxiredoxin, AhpC-type LLC55_19350 IPR019479 Peroxiredoxin, C-terminal LLC55_19350 IPR036249 Thioredoxin-like superfamily LLC55_19350 IPR013766 Thioredoxin domain LLC55_19355 IPR007848 Methyltransferase small domain LLC55_19355 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_19355 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific LLC55_19355 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_19355 IPR004556 Methyltransferase HemK-like LLC55_19355 IPR040758 Release factor glutamine methyltransferase, N-terminal domain LLC55_19360 IPR001598 Transposase, IS30, conserved site LLC55_19360 IPR012337 Ribonuclease H-like superfamily LLC55_19360 IPR001584 Integrase, catalytic core LLC55_19360 IPR036397 Ribonuclease H superfamily LLC55_19360 IPR009057 Homeobox-like domain superfamily LLC55_19390 IPR005944 Proline iminopeptidase LLC55_19390 IPR002410 Peptidase S33 LLC55_19390 IPR029058 Alpha/Beta hydrolase fold LLC55_19390 IPR000073 Alpha/beta hydrolase fold-1 LLC55_19400 IPR004385 Nucleoside diphosphate pyrophosphatase LLC55_19400 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_19400 IPR020084 NUDIX hydrolase, conserved site LLC55_19400 IPR000086 NUDIX hydrolase domain LLC55_19405 IPR036397 Ribonuclease H superfamily LLC55_19405 IPR012337 Ribonuclease H-like superfamily LLC55_19405 IPR029060 PIN-like domain superfamily LLC55_19405 IPR008918 Helix-hairpin-helix motif, class 2 LLC55_19405 IPR002298 DNA polymerase A LLC55_19405 IPR001098 DNA-directed DNA polymerase, family A, palm domain LLC55_19405 IPR020045 DNA polymerase I-like, H3TH domain LLC55_19405 IPR019760 DNA-directed DNA polymerase, family A, conserved site LLC55_19405 IPR002421 5'-3' exonuclease, N-terminal LLC55_19405 IPR002562 3'-5' exonuclease domain LLC55_19405 IPR018320 DNA polymerase 1 LLC55_19405 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal LLC55_19405 IPR036279 5'-3' exonuclease, C-terminal domain superfamily LLC55_19420 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 LLC55_19420 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal LLC55_19420 IPR026255 NAD(P) transhydrogenase, alpha subunit LLC55_19420 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 LLC55_19420 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain LLC55_19420 IPR036291 NAD(P)-binding domain superfamily LLC55_19420 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal LLC55_19440 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal LLC55_19445 IPR029035 DHS-like NAD/FAD-binding domain superfamily LLC55_19445 IPR012136 NADP transhydrogenase, beta subunit LLC55_19445 IPR034300 NADP transhydrogenase beta-like domain LLC55_19470 IPR001544 Aminotransferase class IV LLC55_19470 IPR018300 Aminotransferase, class IV, conserved site LLC55_19470 IPR036038 Aminotransferase-like, PLP-dependent enzymes LLC55_19470 IPR005786 Branched-chain amino acid aminotransferase II LLC55_19470 IPR033939 Branched-chain aminotransferase LLC55_19480 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain LLC55_19480 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC LLC55_19480 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily LLC55_19490 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain LLC55_19490 IPR001139 Glycoside hydrolase family 30 LLC55_19490 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain LLC55_19490 IPR013780 Glycosyl hydrolase, all-beta LLC55_19490 IPR017853 Glycoside hydrolase superfamily LLC55_19505 IPR008254 Flavodoxin/nitric oxide synthase LLC55_19505 IPR001226 Flavodoxin, conserved site LLC55_19505 IPR029039 Flavoprotein-like superfamily LLC55_19505 IPR010089 Flavoprotein WrbA-like LLC55_19505 IPR005025 NADPH-dependent FMN reductase-like LLC55_19510 IPR023679 Uncharacterised protein family UPF0761, bacterial LLC55_19510 IPR017039 Virulence factor BrkB LLC55_19515 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE LLC55_19515 IPR013740 Redoxin LLC55_19515 IPR036249 Thioredoxin-like superfamily LLC55_19515 IPR017937 Thioredoxin, conserved site LLC55_19515 IPR013766 Thioredoxin domain LLC55_19520 IPR020456 Acylphosphatase LLC55_19520 IPR001792 Acylphosphatase-like domain LLC55_19520 IPR036046 Acylphosphatase-like domain superfamily LLC55_19530 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19530 IPR016898 Polyphosphate kinase 2 LLC55_19530 IPR022488 Polyphosphate kinase-2-related LLC55_19530 IPR022486 Polyphosphate kinase 2, PA0141 LLC55_19535 IPR008284 Molybdenum cofactor biosynthesis, conserved site LLC55_19535 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria LLC55_19535 IPR036425 MoaB/Mog-like domain superfamily LLC55_19535 IPR012245 Molybdenum cofactor biosynthesis protein MoaB LLC55_19535 IPR001453 MoaB/Mog domain LLC55_19545 IPR005139 Peptide chain release factor LLC55_19545 IPR000352 Peptide chain release factor class I LLC55_19545 IPR004373 Peptide chain release factor 1 LLC55_19550 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase LLC55_19550 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain LLC55_19550 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal LLC55_19550 IPR018214 Glutamyl-tRNA reductase, conserved site LLC55_19550 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily LLC55_19550 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily LLC55_19550 IPR036291 NAD(P)-binding domain superfamily LLC55_19550 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase LLC55_19555 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_19555 IPR019734 Tetratricopeptide repeat LLC55_19555 IPR013026 Tetratricopeptide repeat-containing domain LLC55_19560 IPR029046 Lipoprotein localisation LolA/LolB/LppX LLC55_19560 IPR004565 Outer membrane lipoprotein LolB LLC55_19565 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_19565 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase LLC55_19565 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_19565 IPR036554 GHMP kinase, C-terminal domain superfamily LLC55_19565 IPR013750 GHMP kinase, C-terminal domain LLC55_19565 IPR006204 GHMP kinase N-terminal domain LLC55_19575 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site LLC55_19575 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain LLC55_19575 IPR000836 Phosphoribosyltransferase domain LLC55_19575 IPR029057 Phosphoribosyltransferase-like LLC55_19575 IPR005946 Ribose-phosphate pyrophosphokinase LLC55_19575 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type LLC55_19580 IPR020055 Ribosomal protein L25, short-form LLC55_19580 IPR037121 Ribosomal protein L25, C-terminal LLC55_19580 IPR001021 Ribosomal protein L25, long-form LLC55_19580 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily LLC55_19580 IPR029751 Ribosomal protein L25 LLC55_19580 IPR020057 Ribosomal protein L25, beta domain LLC55_19580 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal LLC55_19585 IPR001328 Peptidyl-tRNA hydrolase LLC55_19585 IPR018171 Peptidyl-tRNA hydrolase, conserved site LLC55_19585 IPR036416 Peptidyl-tRNA hydrolase superfamily LLC55_19590 IPR041706 YchF, N-terminal LLC55_19590 IPR013029 YchF, C-terminal domain LLC55_19590 IPR023192 TGS-like domain superfamily LLC55_19590 IPR012676 TGS-like LLC55_19590 IPR006073 GTP binding domain LLC55_19590 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19590 IPR031167 OBG-type guanine nucleotide-binding (G) domain LLC55_19590 IPR012675 Beta-grasp domain superfamily LLC55_19590 IPR004095 TGS LLC55_19590 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 LLC55_19610 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal LLC55_19610 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal LLC55_19610 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_19610 IPR000795 Transcription factor, GTP-binding domain LLC55_19610 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle LLC55_19610 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19610 IPR033720 Elongation factor Tu, domain 2 LLC55_19610 IPR004161 Translation elongation factor EFTu-like, domain 2 LLC55_19610 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain LLC55_19610 IPR005225 Small GTP-binding protein domain LLC55_19610 IPR031157 Tr-type G domain, conserved site LLC55_19620 IPR005807 SecE subunit of protein translocation complex, bacterial-like LLC55_19620 IPR038379 SecE superfamily LLC55_19620 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit LLC55_19625 IPR005824 KOW LLC55_19625 IPR006645 NusG, N-terminal LLC55_19625 IPR036735 NusG, N-terminal domain superfamily LLC55_19625 IPR014722 Ribosomal protein L2, domain 2 LLC55_19625 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site LLC55_19625 IPR008991 Translation protein SH3-like domain superfamily LLC55_19625 IPR001062 Transcription antitermination protein, NusG LLC55_19630 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily LLC55_19630 IPR006519 Ribosomal protein L11, bacterial-type LLC55_19630 IPR020783 Ribosomal protein L11, C-terminal LLC55_19630 IPR036769 Ribosomal protein L11, C-terminal domain superfamily LLC55_19630 IPR020785 Ribosomal protein L11, conserved site LLC55_19630 IPR020784 Ribosomal protein L11, N-terminal LLC55_19630 IPR000911 Ribosomal protein L11/L12 LLC55_19635 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich LLC55_19635 IPR005878 Ribosomal protein L1, bacterial-type LLC55_19635 IPR002143 Ribosomal protein L1 LLC55_19635 IPR023674 Ribosomal protein L1-like LLC55_19635 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein LLC55_19635 IPR023673 Ribosomal protein L1, conserved site LLC55_19640 IPR022973 Ribosomal protein L10 LLC55_19640 IPR001790 Ribosomal protein L10P LLC55_19645 IPR000206 Ribosomal protein L7/L12 LLC55_19645 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like LLC55_19645 IPR008932 Ribosomal protein L7/L12, oligomerisation LLC55_19645 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily LLC55_19645 IPR013823 Ribosomal protein L7/L12, C-terminal LLC55_19650 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily LLC55_19650 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain LLC55_19650 IPR015712 DNA-directed RNA polymerase, subunit 2 LLC55_19650 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain LLC55_19650 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily LLC55_19650 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type LLC55_19650 IPR007121 RNA polymerase, beta subunit, conserved site LLC55_19650 IPR007644 RNA polymerase, beta subunit, protrusion LLC55_19650 IPR007642 RNA polymerase Rpb2, domain 2 LLC55_19650 IPR037034 RNA polymerase Rpb2, domain 2 superfamily LLC55_19650 IPR007645 RNA polymerase Rpb2, domain 3 LLC55_19650 IPR007641 RNA polymerase Rpb2, domain 7 LLC55_19650 IPR014724 RNA polymerase Rpb2, OB-fold LLC55_19655 IPR007081 RNA polymerase Rpb1, domain 5 LLC55_19655 IPR012754 DNA-directed RNA polymerase, subunit beta-prime LLC55_19655 IPR000722 RNA polymerase, alpha subunit LLC55_19655 IPR006592 RNA polymerase, N-terminal LLC55_19655 IPR007080 RNA polymerase Rpb1, domain 1 LLC55_19655 IPR007066 RNA polymerase Rpb1, domain 3 LLC55_19655 IPR042102 RNA polymerase Rpb1, domain 3 superfamily LLC55_19655 IPR007083 RNA polymerase Rpb1, domain 4 LLC55_19655 IPR038120 RNA polymerase Rpb1, funnel domain superfamily LLC55_19660 IPR006032 Ribosomal protein S12/S23 LLC55_19660 IPR012340 Nucleic acid-binding, OB-fold LLC55_19660 IPR005679 Ribosomal protein S12, bacterial-type LLC55_19665 IPR020606 Ribosomal protein S7, conserved site LLC55_19665 IPR000235 Ribosomal protein S5/S7 LLC55_19665 IPR036823 Ribosomal protein S7 domain superfamily LLC55_19665 IPR023798 Ribosomal protein S7 domain LLC55_19665 IPR005717 Ribosomal protein S7, bacterial/organellar-type LLC55_19670 IPR041095 Elongation Factor G, domain II LLC55_19670 IPR005517 Translation elongation factor EFG/EF2, domain IV LLC55_19670 IPR035649 EFG, domain V LLC55_19670 IPR000640 Elongation factor EFG, domain V-like LLC55_19670 IPR005225 Small GTP-binding protein domain LLC55_19670 IPR031157 Tr-type G domain, conserved site LLC55_19670 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19670 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_19670 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_19670 IPR009022 Elongation factor G, domain III LLC55_19670 IPR000795 Transcription factor, GTP-binding domain LLC55_19670 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_19670 IPR004540 Translation elongation factor EFG/EF2 LLC55_19670 IPR004161 Translation elongation factor EFTu-like, domain 2 LLC55_19670 IPR035647 EF-G domain III/V-like LLC55_19675 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain LLC55_19675 IPR004161 Translation elongation factor EFTu-like, domain 2 LLC55_19675 IPR033720 Elongation factor Tu, domain 2 LLC55_19675 IPR031157 Tr-type G domain, conserved site LLC55_19675 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19675 IPR005225 Small GTP-binding protein domain LLC55_19675 IPR000795 Transcription factor, GTP-binding domain LLC55_19675 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_19675 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal LLC55_19675 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle LLC55_19675 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal LLC55_19685 IPR036838 Ribosomal protein S10 domain superfamily LLC55_19685 IPR027486 Ribosomal protein S10 domain LLC55_19685 IPR018268 Ribosomal protein S10, conserved site LLC55_19685 IPR001848 Ribosomal protein S10 LLC55_19690 IPR000597 Ribosomal protein L3 LLC55_19690 IPR019927 Ribosomal protein L3, bacterial/organelle-type LLC55_19690 IPR019926 Ribosomal protein L3, conserved site LLC55_19690 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_19695 IPR002136 Ribosomal protein L4/L1e LLC55_19695 IPR023574 Ribosomal protein L4 domain superfamily LLC55_19695 IPR013005 50S ribosomal protein uL4 LLC55_19700 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily LLC55_19700 IPR012678 Ribosomal protein L23/L15e core domain superfamily LLC55_19700 IPR013025 Ribosomal protein L25/L23 LLC55_19705 IPR022666 Ribosomal Proteins L2, RNA binding domain LLC55_19705 IPR012340 Nucleic acid-binding, OB-fold LLC55_19705 IPR014722 Ribosomal protein L2, domain 2 LLC55_19705 IPR005880 Ribosomal protein L2, bacterial/organellar-type LLC55_19705 IPR022669 Ribosomal protein L2, C-terminal LLC55_19705 IPR022671 Ribosomal protein L2, conserved site LLC55_19705 IPR014726 Ribosomal protein L2, domain 3 LLC55_19705 IPR008991 Translation protein SH3-like domain superfamily LLC55_19705 IPR002171 Ribosomal protein L2 LLC55_19710 IPR023575 Ribosomal protein S19, superfamily LLC55_19710 IPR002222 Ribosomal protein S19/S15 LLC55_19710 IPR005732 Ribosomal protein S19, bacterial-type LLC55_19710 IPR020934 Ribosomal protein S19 conserved site LLC55_19715 IPR001063 Ribosomal protein L22/L17 LLC55_19715 IPR018260 Ribosomal protein L22/L17, conserved site LLC55_19715 IPR036394 Ribosomal protein L22/L17 superfamily LLC55_19715 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type LLC55_19720 IPR001351 Ribosomal protein S3, C-terminal LLC55_19720 IPR036419 Ribosomal protein S3, C-terminal domain superfamily LLC55_19720 IPR018280 Ribosomal protein S3, conserved site LLC55_19720 IPR005704 Ribosomal protein S3, bacterial-type LLC55_19720 IPR015946 K homology domain-like, alpha/beta LLC55_19720 IPR004044 K Homology domain, type 2 LLC55_19720 IPR004087 K Homology domain LLC55_19720 IPR009019 K homology domain superfamily, prokaryotic type LLC55_19725 IPR016180 Ribosomal protein L10e/L16 LLC55_19725 IPR036920 Ribosomal protein L10e/L16 superfamily LLC55_19725 IPR000114 Ribosomal protein L16 LLC55_19725 IPR020798 Ribosomal protein L16, conserved site LLC55_19730 IPR036049 Ribosomal protein L29/L35 superfamily LLC55_19730 IPR001854 Ribosomal protein L29/L35 LLC55_19735 IPR000266 Ribosomal protein S17/S11 LLC55_19735 IPR019984 30S ribosomal protein S17 LLC55_19735 IPR012340 Nucleic acid-binding, OB-fold LLC55_19740 IPR036853 Ribosomal protein L14 superfamily LLC55_19740 IPR000218 Ribosomal protein L14P LLC55_19740 IPR005745 Ribosomal protein L14P, bacterial-type LLC55_19740 IPR019972 Ribosomal protein L14P, conserved site LLC55_19745 IPR005824 KOW LLC55_19745 IPR041988 Ribosomal Protein L26/L24, KOW domain LLC55_19745 IPR014722 Ribosomal protein L2, domain 2 LLC55_19745 IPR003256 Ribosomal protein L24 LLC55_19745 IPR008991 Translation protein SH3-like domain superfamily LLC55_19750 IPR020929 Ribosomal protein L5, conserved site LLC55_19750 IPR022803 Ribosomal protein L5 domain superfamily LLC55_19750 IPR031309 Ribosomal protein L5, C-terminal LLC55_19750 IPR031310 Ribosomal protein L5, N-terminal LLC55_19750 IPR002132 Ribosomal protein L5 LLC55_19750 IPR020930 Ribosomal protein L5, bacterial-type LLC55_19755 IPR001209 Ribosomal protein S14 LLC55_19755 IPR023036 Ribosomal protein S14, bacterial/plastid LLC55_19760 IPR000630 Ribosomal protein S8 LLC55_19760 IPR035987 Ribosomal protein S8 superfamily LLC55_19765 IPR000702 Ribosomal protein L6 LLC55_19765 IPR020040 Ribosomal protein L6, alpha-beta domain LLC55_19765 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily LLC55_19765 IPR019906 Ribosomal protein L6, bacterial-type LLC55_19765 IPR002358 Ribosomal protein L6, conserved site LLC55_19770 IPR004389 Ribosomal protein L18, bacterial-type LLC55_19770 IPR005484 Ribosomal protein L18 LLC55_19775 IPR005324 Ribosomal protein S5, C-terminal LLC55_19775 IPR018192 Ribosomal protein S5, N-terminal, conserved site LLC55_19775 IPR013810 Ribosomal protein S5, N-terminal LLC55_19775 IPR000851 Ribosomal protein S5 LLC55_19775 IPR005712 Ribosomal protein S5, bacterial-type LLC55_19775 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_19775 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_19780 IPR005996 Ribosomal protein L30, bacterial-type LLC55_19780 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain LLC55_19780 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily LLC55_19785 IPR036227 Ribosomal L18e/L15P superfamily LLC55_19785 IPR030878 Ribosomal protein L15 LLC55_19785 IPR005749 Ribosomal protein L15, bacterial-type LLC55_19785 IPR001196 Ribosomal protein L15, conserved site LLC55_19785 IPR021131 Ribosomal protein L18e/L15P LLC55_19790 IPR026593 Protein translocase subunit SecY LLC55_19790 IPR002208 SecY/SEC61-alpha family LLC55_19790 IPR030659 SecY conserved site LLC55_19790 IPR023201 SecY domain superfamily LLC55_19795 IPR019980 Ribosomal protein S13, bacterial-type LLC55_19795 IPR018269 Ribosomal protein S13, conserved site LLC55_19795 IPR027437 30s ribosomal protein S13, C-terminal LLC55_19795 IPR001892 Ribosomal protein S13 LLC55_19795 IPR010979 Ribosomal protein S13-like, H2TH LLC55_19800 IPR001971 Ribosomal protein S11 LLC55_19800 IPR019981 Ribosomal protein S11, bacterial-type LLC55_19800 IPR018102 Ribosomal S11, conserved site LLC55_19800 IPR036967 Ribosomal protein S11 superfamily LLC55_19805 IPR022801 Ribosomal protein S4/S9 LLC55_19805 IPR001912 Ribosomal protein S4/S9, N-terminal LLC55_19805 IPR005709 Ribosomal protein S4, bacterial-type LLC55_19805 IPR018079 Ribosomal protein S4, conserved site LLC55_19805 IPR002942 RNA-binding S4 domain LLC55_19805 IPR036986 RNA-binding S4 domain superfamily LLC55_19810 IPR011262 DNA-directed RNA polymerase, insert domain LLC55_19810 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type LLC55_19810 IPR036603 RNA polymerase, RBP11-like subunit LLC55_19810 IPR011260 RNA polymerase, alpha subunit, C-terminal LLC55_19810 IPR011773 DNA-directed RNA polymerase, alpha subunit LLC55_19810 IPR036643 DNA-directed RNA polymerase, insert domain superfamily LLC55_19815 IPR036373 Ribosomal protein L17 superfamily LLC55_19815 IPR000456 Ribosomal protein L17 LLC55_19830 IPR012337 Ribonuclease H-like superfamily LLC55_19830 IPR036397 Ribonuclease H superfamily LLC55_19830 IPR001598 Transposase, IS30, conserved site LLC55_19830 IPR009057 Homeobox-like domain superfamily LLC55_19830 IPR001584 Integrase, catalytic core LLC55_19865 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_19865 IPR003437 Glycine dehydrogenase (decarboxylating) LLC55_19865 IPR020581 Glycine cleavage system P protein LLC55_19865 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_19865 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_19875 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19875 IPR026634 Protein-tyrosine sulfotransferase LLC55_19885 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_19885 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19885 IPR003439 ABC transporter-like LLC55_19885 IPR003593 AAA+ ATPase domain LLC55_19885 IPR011527 ABC transporter type 1, transmembrane domain LLC55_19885 IPR005074 Peptidase C39, bacteriocin processing LLC55_19885 IPR017871 ABC transporter, conserved site LLC55_19885 IPR033838 Colicin V processing peptidase LLC55_19885 IPR039421 Type I protein exporter LLC55_19905 IPR000917 Sulfatase, N-terminal LLC55_19905 IPR017850 Alkaline-phosphatase-like, core domain superfamily LLC55_19905 IPR012549 Phosphoethanolamine transferase, N-terminal LLC55_19905 IPR040423 Phosphoethanolamine transferase LLC55_19915 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase LLC55_19915 IPR003342 Glycosyl transferase family 39/83 LLC55_19920 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_19920 IPR011006 CheY-like superfamily LLC55_19920 IPR001789 Signal transduction response regulator, receiver domain LLC55_19920 IPR039420 Transcriptional regulatory protein WalR-like LLC55_19920 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_19925 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_19925 IPR013727 Two-component sensor kinase, N-terminal LLC55_19925 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_19925 IPR005467 Histidine kinase domain LLC55_19925 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_19925 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_19925 IPR003660 HAMP domain LLC55_19925 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_19935 IPR036707 Cell division topological specificity factor MinE superfamily LLC55_19935 IPR005527 Cell division topological specificity factor MinE LLC55_19940 IPR025501 ATP binding protein MinD LLC55_19940 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain LLC55_19940 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_19940 IPR010223 ATP binding protein MinD, bacterial-type LLC55_19945 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal LLC55_19945 IPR013033 Septum formation inhibitor MinC LLC55_19945 IPR007874 Septum formation inhibitor MinC, N-terminal LLC55_19945 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily LLC55_19945 IPR005526 Septum formation inhibitor MinC, C-terminal LLC55_19945 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily LLC55_19955 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_19955 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain LLC55_19955 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_19960 IPR000792 Transcription regulator LuxR, C-terminal LLC55_19960 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_19960 IPR011006 CheY-like superfamily LLC55_19960 IPR001789 Signal transduction response regulator, receiver domain LLC55_19975 IPR011257 DNA glycosylase LLC55_19975 IPR003265 HhH-GPD domain LLC55_20000 IPR013815 ATP-grasp fold, subdomain 1 LLC55_20000 IPR011761 ATP-grasp fold LLC55_20000 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type LLC55_20000 IPR016185 Pre-ATP-grasp domain superfamily LLC55_20000 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase LLC55_20000 IPR011054 Rudiment single hybrid motif LLC55_20005 IPR009057 Homeobox-like domain superfamily LLC55_20005 IPR002514 Transposase IS3/IS911family LLC55_20030 IPR017731 Type VI secretion system, IcmF LLC55_20030 IPR010623 Type VI secretion system IcmF, C-terminal LLC55_20030 IPR025743 IcmF-related, N-terminal domain LLC55_20030 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_20030 IPR009612 IcmF-related LLC55_20040 IPR036737 OmpA-like domain superfamily LLC55_20040 IPR006690 Outer membrane protein, OmpA-like, conserved site LLC55_20040 IPR007055 BON domain LLC55_20040 IPR006664 Outer membrane protein, bacterial LLC55_20040 IPR006665 OmpA-like domain LLC55_20055 IPR006531 Gp5 N-terminal LLC55_20055 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20055 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20055 IPR010609 Gp5, C-terminal LLC55_20055 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20065 IPR005532 Sulfatase-modifying factor enzyme LLC55_20065 IPR042095 Sulfatase-modifying factor enzyme superfamily LLC55_20065 IPR016187 C-type lectin fold LLC55_20075 IPR016187 C-type lectin fold LLC55_20075 IPR005532 Sulfatase-modifying factor enzyme LLC55_20075 IPR042095 Sulfatase-modifying factor enzyme superfamily LLC55_20140 IPR016187 C-type lectin fold LLC55_20140 IPR005532 Sulfatase-modifying factor enzyme LLC55_20140 IPR042095 Sulfatase-modifying factor enzyme superfamily LLC55_20145 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20145 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20145 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20145 IPR006531 Gp5 N-terminal LLC55_20170 IPR006531 Gp5 N-terminal LLC55_20170 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_20170 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20170 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20170 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20170 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_20215 IPR002559 Transposase, IS4-like LLC55_20215 IPR008490 Transposase InsH, N-terminal LLC55_20225 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20225 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_20225 IPR006531 Gp5 N-terminal LLC55_20225 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_20225 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20225 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20235 IPR008490 Transposase InsH, N-terminal LLC55_20245 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20245 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20245 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20245 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_20245 IPR006531 Gp5 N-terminal LLC55_20245 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_20260 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_20260 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_20260 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20260 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20260 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20260 IPR006531 Gp5 N-terminal LLC55_20275 IPR023346 Lysozyme-like domain superfamily LLC55_20275 IPR000726 Glycoside hydrolase, family 19, catalytic LLC55_20280 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20280 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20280 IPR006531 Gp5 N-terminal LLC55_20280 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_20280 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_20280 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20305 IPR006531 Gp5 N-terminal LLC55_20305 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal LLC55_20305 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20305 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20305 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20305 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain LLC55_20330 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 LLC55_20335 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath LLC55_20350 IPR010272 Type VI secretion system, TssF-like LLC55_20360 IPR004176 Clp, N-terminal LLC55_20360 IPR017729 Type VI secretion system, ATPase ClpV1 LLC55_20360 IPR003959 ATPase, AAA-type, core LLC55_20360 IPR003593 AAA+ ATPase domain LLC55_20360 IPR019489 Clp ATPase, C-terminal LLC55_20360 IPR036628 Clp, N-terminal domain superfamily LLC55_20360 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_20360 IPR041546 ClpA/ClpB, AAA lid domain LLC55_20360 IPR018368 ClpA/B, conserved site 1 LLC55_20360 IPR001270 ClpA/B family LLC55_20370 IPR006531 Gp5 N-terminal LLC55_20370 IPR010609 Gp5, C-terminal LLC55_20370 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_20370 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_20370 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_20435 IPR000055 Restriction endonuclease, type I, HsdS LLC55_20440 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_20440 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily LLC55_20440 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_20440 IPR003356 DNA methylase, adenine-specific LLC55_20450 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal LLC55_20450 IPR013670 EcoEI R protein C-terminal domain LLC55_20450 IPR006935 Helicase/UvrB, N-terminal LLC55_20450 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_20450 IPR001650 Helicase, C-terminal LLC55_20450 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_20470 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily LLC55_20470 IPR003356 DNA methylase, adenine-specific LLC55_20470 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_20475 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 LLC55_20480 IPR002934 Polymerase, nucleotidyl transferase domain LLC55_20495 IPR021810 Protein of unknown function DUF3387 LLC55_20495 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_20495 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal LLC55_20495 IPR004473 Restriction endonuclease, type I, HsdR LLC55_20495 IPR040980 SWI2/SNF2 ATPase LLC55_20495 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_20525 IPR002156 Ribonuclease H domain LLC55_20525 IPR013078 Histidine phosphatase superfamily, clade-1 LLC55_20525 IPR029033 Histidine phosphatase superfamily LLC55_20525 IPR012337 Ribonuclease H-like superfamily LLC55_20525 IPR014636 RNase H, phosphoglycerate mutase domain-containing LLC55_20525 IPR036397 Ribonuclease H superfamily LLC55_20535 IPR008490 Transposase InsH, N-terminal LLC55_20535 IPR002559 Transposase, IS4-like LLC55_20560 IPR039418 LexA-like LLC55_20560 IPR036286 LexA/Signal peptidase-like superfamily LLC55_20560 IPR006199 LexA repressor, DNA-binding domain LLC55_20560 IPR006197 Peptidase S24, LexA-like LLC55_20560 IPR015927 Peptidase S24/S26A/S26B/S26C LLC55_20560 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_20560 IPR036390 Winged helix DNA-binding domain superfamily LLC55_20560 IPR006200 Transcription regulator LexA LLC55_20580 IPR004805 DNA polymerase III, alpha subunit LLC55_20580 IPR016195 Polymerase/histidinol phosphatase-like LLC55_20580 IPR004013 PHP domain LLC55_20580 IPR029460 DNA polymerase, helix-hairpin-helix motif LLC55_20580 IPR023073 DNA polymerase, error-prone LLC55_20580 IPR040982 DNA polymerase III alpha subunit finger domain LLC55_20580 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain LLC55_20580 IPR003141 Polymerase/histidinol phosphatase, N-terminal LLC55_20590 IPR009003 Peptidase S1, PA clan LLC55_20595 IPR004814 Oligopeptide transporter OPT LLC55_20595 IPR004813 Oligopeptide transporter, OPT superfamily LLC55_20600 IPR002559 Transposase, IS4-like LLC55_20600 IPR008490 Transposase InsH, N-terminal LLC55_20620 IPR029058 Alpha/Beta hydrolase fold LLC55_20620 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_20620 IPR002469 Dipeptidylpeptidase IV, N-terminal domain LLC55_20620 IPR011659 WD40-like Beta Propeller LLC55_20620 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain LLC55_20650 IPR003313 AraC-type arabinose-binding/dimerisation domain LLC55_20650 IPR018060 DNA binding HTH domain, AraC-type LLC55_20650 IPR037923 Transcription regulator HTH-like LLC55_20650 IPR009057 Homeobox-like domain superfamily LLC55_20650 IPR014710 RmlC-like jelly roll fold LLC55_20675 IPR008490 Transposase InsH, N-terminal LLC55_20700 IPR018028 Catalase, mono-functional, haem-containing LLC55_20700 IPR024708 Catalase active site LLC55_20700 IPR024712 Catalase, mono-functional, haem-containing, clade 2 LLC55_20700 IPR011614 Catalase core domain LLC55_20700 IPR037060 Catalase core domain superfamily LLC55_20700 IPR002226 Catalase haem-binding site LLC55_20700 IPR010582 Catalase immune-responsive domain LLC55_20700 IPR041399 Large catalase, C-terminal domain LLC55_20700 IPR029062 Class I glutamine amidotransferase-like LLC55_20700 IPR020835 Catalase superfamily LLC55_20730 IPR036043 Phosphoglycerate kinase superfamily LLC55_20730 IPR015824 Phosphoglycerate kinase, N-terminal LLC55_20730 IPR015911 Phosphoglycerate kinase, conserved site LLC55_20730 IPR001576 Phosphoglycerate kinase LLC55_20735 IPR041492 Haloacid dehalogenase-like hydrolase LLC55_20735 IPR036412 HAD-like superfamily LLC55_20735 IPR023198 Phosphoglycolate phosphatase-like, domain 2 LLC55_20735 IPR023214 HAD superfamily LLC55_20740 IPR015806 Pyruvate kinase, insert domain superfamily LLC55_20740 IPR036918 Pyruvate kinase, C-terminal domain superfamily LLC55_20740 IPR040442 Pyruvate kinase-like domain superfamily LLC55_20740 IPR015795 Pyruvate kinase, C-terminal LLC55_20740 IPR011037 Pyruvate kinase-like, insert domain superfamily LLC55_20740 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily LLC55_20740 IPR001697 Pyruvate kinase LLC55_20740 IPR018209 Pyruvate kinase, active site LLC55_20740 IPR015793 Pyruvate kinase, barrel LLC55_20745 IPR000741 Fructose-bisphosphate aldolase, class-I LLC55_20745 IPR029768 Fructose-bisphosphate aldolase class-I active site LLC55_20745 IPR013785 Aldolase-type TIM barrel LLC55_20750 IPR002589 Macro domain LLC55_20760 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_20760 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site LLC55_20760 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_20760 IPR005859 Cysteine synthase CysK LLC55_20760 IPR005856 Cysteine synthase LLC55_20765 IPR006366 Uroporphyrin-III C-methyltransferase LLC55_20765 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site LLC55_20765 IPR014776 Tetrapyrrole methylase, subdomain 2 LLC55_20765 IPR019478 Sirohaem synthase, dimerisation domain LLC55_20765 IPR028281 Siroheme synthase, central domain LLC55_20765 IPR012409 Sirohaem synthase LLC55_20765 IPR036291 NAD(P)-binding domain superfamily LLC55_20765 IPR000878 Tetrapyrrole methylase LLC55_20765 IPR035996 Tetrapyrrole methylase superfamily LLC55_20765 IPR014777 Tetrapyrrole methylase, subdomain 1 LLC55_20765 IPR006367 Sirohaem synthase, N-terminal LLC55_20770 IPR000847 Transcription regulator HTH, LysR LLC55_20770 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_20770 IPR036390 Winged helix DNA-binding domain superfamily LLC55_20770 IPR005119 LysR, substrate-binding LLC55_20795 IPR001789 Signal transduction response regulator, receiver domain LLC55_20795 IPR038188 TorS, sensor domain superfamily LLC55_20795 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain LLC55_20795 IPR037952 Sensor histidine kinase TorS, sensor domain LLC55_20795 IPR036641 HPT domain superfamily LLC55_20795 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_20795 IPR011006 CheY-like superfamily LLC55_20795 IPR003660 HAMP domain LLC55_20795 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_20795 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_20795 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_20795 IPR005467 Histidine kinase domain LLC55_20795 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_20815 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase LLC55_20815 IPR002500 Phosphoadenosine phosphosulphate reductase LLC55_20815 IPR011800 Phosphoadenosine phosphosulphate reductase CysH LLC55_20815 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_20820 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily LLC55_20820 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit LLC55_20820 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain LLC55_20820 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain LLC55_20820 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site LLC55_20825 IPR017927 FAD-binding domain, ferredoxin reductase-type LLC55_20825 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain LLC55_20825 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria LLC55_20825 IPR017938 Riboflavin synthase-like beta-barrel LLC55_20825 IPR001433 Oxidoreductase FAD/NAD(P)-binding LLC55_20825 IPR001094 Flavodoxin-like LLC55_20825 IPR008254 Flavodoxin/nitric oxide synthase LLC55_20825 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase LLC55_20825 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily LLC55_20825 IPR029039 Flavoprotein-like superfamily LLC55_20825 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain LLC55_20825 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding LLC55_20830 IPR002500 Phosphoadenosine phosphosulphate reductase LLC55_20830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_20830 IPR011784 Sulphate adenylyltransferase, small subunit LLC55_20835 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal LLC55_20835 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_20835 IPR011779 Sulphate adenylyltransferase, large subunit LLC55_20835 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_20835 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain LLC55_20835 IPR002891 Adenylyl-sulfate kinase LLC55_20835 IPR000795 Transcription factor, GTP-binding domain LLC55_20835 IPR031157 Tr-type G domain, conserved site LLC55_20840 IPR006143 RND efflux pump, membrane fusion protein LLC55_20840 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_20845 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains LLC55_20845 IPR001036 Acriflavin resistance protein LLC55_20850 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase LLC55_20850 IPR014782 Peptidase M1, membrane alanine aminopeptidase LLC55_20850 IPR034016 Aminopeptidase N-type LLC55_20850 IPR024571 ERAP1-like C-terminal domain LLC55_20850 IPR042097 Aminopeptidase N-like , N-terminal LLC55_20870 IPR029064 50S ribosomal protein L30e-like LLC55_20870 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_20870 IPR013123 RNA 2-O ribose methyltransferase, substrate binding LLC55_20870 IPR029028 Alpha/beta knot methyltransferases LLC55_20870 IPR004441 RNA methyltransferase TrmH family LLC55_20870 IPR001537 tRNA/rRNA methyltransferase, SpoU type LLC55_20870 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB LLC55_20875 IPR019826 Carboxylesterase type B, active site LLC55_20875 IPR002018 Carboxylesterase, type B LLC55_20875 IPR029058 Alpha/Beta hydrolase fold LLC55_20895 IPR036019 Gated mechanosensitive channel LLC55_20895 IPR019823 Large-conductance mechanosensitive channel, conserved site LLC55_20895 IPR001185 Large-conductance mechanosensitive channel LLC55_20895 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L LLC55_20900 IPR011234 Fumarylacetoacetase-like, C-terminal LLC55_20900 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily LLC55_20925 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily LLC55_20925 IPR031312 Sodium/sulphate symporter, conserved site LLC55_20925 IPR006037 Regulator of K+ conductance, C-terminal LLC55_20925 IPR004680 Citrate transporter-like domain LLC55_20930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_20930 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type LLC55_20935 IPR008867 Thiazole synthase LLC55_20935 IPR013785 Aldolase-type TIM barrel LLC55_20935 IPR033983 Thiazole synthase ThiG LLC55_20945 IPR005546 Autotransporter beta-domain LLC55_20945 IPR036709 Autotransporter beta-domain superfamily LLC55_20945 IPR017186 Lipase, autotransporter EstA LLC55_20945 IPR008265 Lipase, GDSL, active site LLC55_20945 IPR006315 Outer membrane autotransporter barrel LLC55_20945 IPR036514 SGNH hydrolase superfamily LLC55_20945 IPR001087 GDSL lipase/esterase LLC55_21035 IPR001584 Integrase, catalytic core LLC55_21035 IPR001598 Transposase, IS30, conserved site LLC55_21035 IPR036397 Ribonuclease H superfamily LLC55_21035 IPR012337 Ribonuclease H-like superfamily LLC55_21035 IPR009057 Homeobox-like domain superfamily LLC55_21080 IPR013766 Thioredoxin domain LLC55_21080 IPR017937 Thioredoxin, conserved site LLC55_21080 IPR036249 Thioredoxin-like superfamily LLC55_21080 IPR005746 Thioredoxin LLC55_21090 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain LLC55_21090 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding LLC55_21090 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_21090 IPR002302 Leucine-tRNA ligase LLC55_21090 IPR025709 Leucyl-tRNA synthetase, editing domain LLC55_21090 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding LLC55_21090 IPR002300 Aminoacyl-tRNA synthetase, class Ia LLC55_21090 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site LLC55_21105 IPR004821 Cytidyltransferase-like domain LLC55_21105 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase LLC55_21105 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_21110 IPR004394 Protein Iojap/ribosomal silencing factor RsfS LLC55_21130 IPR029028 Alpha/beta knot methyltransferases LLC55_21130 IPR003742 RNA methyltransferase RlmH LLC55_21130 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal LLC55_21155 IPR007497 Protein of unknown function DUF541 LLC55_21160 IPR029001 Inosine triphosphate pyrophosphatase-like LLC55_21160 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein LLC55_21165 IPR022967 RNA-binding domain, S1 LLC55_21165 IPR003029 S1 domain LLC55_21165 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G LLC55_21165 IPR004659 Ribonuclease E/G LLC55_21165 IPR012340 Nucleic acid-binding, OB-fold LLC55_21170 IPR011836 Conserved hypothetical protein CHP02099 LLC55_21170 IPR025263 Domain of unknown function DUF3971 LLC55_21170 IPR032712 AsmA-like, C-terminal LLC55_21180 IPR025502 TldD LLC55_21180 IPR002510 Metalloprotease TldD/PmbA LLC55_21180 IPR035068 Metalloprotease TldD/PmbA, N-terminal LLC55_21180 IPR036059 Metalloprotease TldD/PmbA superfamily LLC55_21185 IPR006839 Ribosome-associated, YjgA LLC55_21185 IPR023153 PSPTO4464-like domain superfamily LLC55_21190 IPR002510 Metalloprotease TldD/PmbA LLC55_21190 IPR035068 Metalloprotease TldD/PmbA, N-terminal LLC55_21190 IPR036059 Metalloprotease TldD/PmbA superfamily LLC55_21215 IPR033749 Polyprenyl synthetase, conserved site LLC55_21215 IPR008949 Isoprenoid synthase domain superfamily LLC55_21215 IPR000092 Polyprenyl synthetase LLC55_21220 IPR037004 Exonuclease VII, small subunit superfamily LLC55_21220 IPR003761 Exonuclease VII, small subunit LLC55_21225 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal LLC55_21225 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold LLC55_21225 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain LLC55_21225 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal LLC55_21225 IPR012094 tRNA(Ile)-lysidine synthase LLC55_21225 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal LLC55_21230 IPR001952 Alkaline phosphatase LLC55_21230 IPR018299 Alkaline phosphatase, active site LLC55_21230 IPR017850 Alkaline-phosphatase-like, core domain superfamily LLC55_21250 IPR000064 Endopeptidase, NLPC/P60 domain LLC55_21250 IPR038765 Papain-like cysteine peptidase superfamily LLC55_21255 IPR000064 Endopeptidase, NLPC/P60 domain LLC55_21255 IPR038765 Papain-like cysteine peptidase superfamily LLC55_21260 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain LLC55_21265 IPR007349 Domain of unknown function DUF418 LLC55_21270 IPR023080 D-amino acid dehydrogenase DadA LLC55_21270 IPR006076 FAD dependent oxidoreductase LLC55_21270 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_21310 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 LLC55_21310 IPR000808 Mrp, conserved site LLC55_21310 IPR019591 Mrp/NBP35 ATP-binding protein LLC55_21310 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_21315 IPR011962 dCTP deaminase LLC55_21315 IPR029054 dUTPase-like LLC55_21315 IPR036157 dUTPase-like superfamily LLC55_21315 IPR033704 dUTPase, trimeric LLC55_21340 IPR002792 TRAM domain LLC55_21340 IPR038135 Methylthiotransferase, N-terminal domain superfamily LLC55_21340 IPR007197 Radical SAM LLC55_21340 IPR005840 Ribosomal protein S12 methylthiotransferase RimO LLC55_21340 IPR013848 Methylthiotransferase, N-terminal LLC55_21340 IPR023404 Radical SAM, alpha/beta horseshoe LLC55_21340 IPR005839 Methylthiotransferase LLC55_21340 IPR020612 Methylthiotransferase, conserved site LLC55_21340 IPR006638 Elp3/MiaB/NifB LLC55_21340 IPR041582 RimO, TRAM domain LLC55_21345 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily LLC55_21345 IPR018151 Transcription elongation factor, GreA/GreB, conserved site LLC55_21345 IPR028624 Transcription elongation factor GreA/GreB LLC55_21345 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal LLC55_21345 IPR023459 Transcription elongation factor GreA/GreB family LLC55_21345 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal LLC55_21345 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily LLC55_21345 IPR006358 Transcription elongation factor GreB LLC55_21355 IPR036397 Ribonuclease H superfamily LLC55_21355 IPR001598 Transposase, IS30, conserved site LLC55_21355 IPR001584 Integrase, catalytic core LLC55_21355 IPR012337 Ribonuclease H-like superfamily LLC55_21355 IPR009057 Homeobox-like domain superfamily LLC55_21380 IPR003817 Phosphatidylserine decarboxylase-related LLC55_21380 IPR033177 Phosphatidylserine decarboxylase LLC55_21380 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 LLC55_21385 IPR036249 Thioredoxin-like superfamily LLC55_21385 IPR003782 Copper chaperone SCO1/SenC LLC55_21390 IPR002052 DNA methylase, N-6 adenine-specific, conserved site LLC55_21390 IPR007848 Methyltransferase small domain LLC55_21390 IPR004556 Methyltransferase HemK-like LLC55_21390 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase LLC55_21390 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_21395 IPR000453 Chorismate synthase LLC55_21395 IPR035904 Chorismate synthase AroC superfamily LLC55_21395 IPR020541 Chorismate synthase, conserved site LLC55_21400 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLC55_21400 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 LLC55_21400 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain LLC55_21400 IPR036291 NAD(P)-binding domain superfamily LLC55_21400 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site LLC55_21405 IPR012080 Aspartate-semialdehyde dehydrogenase LLC55_21405 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type LLC55_21405 IPR036291 NAD(P)-binding domain superfamily LLC55_21405 IPR000534 Semialdehyde dehydrogenase, NAD-binding LLC55_21405 IPR012280 Semialdehyde dehydrogenase, dimerisation domain LLC55_21415 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_21415 IPR020012 Motility protein FimV, N-terminal LLC55_21415 IPR018392 LysM domain LLC55_21415 IPR036779 LysM domain superfamily LLC55_21415 IPR020011 Motility protein FimV, C-terminal LLC55_21415 IPR020012 Motility protein FimV, N-terminal LLC55_21415 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_21415 IPR038440 FimV, C-terminal domain superfamily LLC55_21415 IPR018392 LysM domain LLC55_21415 IPR036779 LysM domain superfamily LLC55_21415 IPR020011 Motility protein FimV, C-terminal LLC55_21415 IPR038440 FimV, C-terminal domain superfamily LLC55_21425 IPR020095 Pseudouridine synthase I, TruA, C-terminal LLC55_21425 IPR001406 Pseudouridine synthase I, TruA LLC55_21425 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_21425 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain LLC55_21430 IPR013785 Aldolase-type TIM barrel LLC55_21430 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) LLC55_21430 IPR011060 Ribulose-phosphate binding barrel LLC55_21435 IPR005119 LysR, substrate-binding LLC55_21435 IPR037418 HTH-type transcriptional regulator TrpI, PBP2 LLC55_21435 IPR000847 Transcription regulator HTH, LysR LLC55_21435 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_21435 IPR036390 Winged helix DNA-binding domain superfamily LLC55_21440 IPR023026 Tryptophan synthase beta chain/beta chain-like LLC55_21440 IPR001926 Pyridoxal-phosphate dependent enzyme LLC55_21440 IPR006653 Tryptophan synthase, beta chain, conserved site LLC55_21440 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme LLC55_21440 IPR006654 Tryptophan synthase, beta chain LLC55_21450 IPR013785 Aldolase-type TIM barrel LLC55_21450 IPR011060 Ribulose-phosphate binding barrel LLC55_21450 IPR018204 Tryptophan synthase, alpha chain, active site LLC55_21450 IPR002028 Tryptophan synthase, alpha chain LLC55_21455 IPR029045 ClpP/crotonase-like domain superfamily LLC55_21455 IPR041010 Acetyl-coA carboxylase zinc finger domain LLC55_21455 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal LLC55_21455 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit LLC55_21455 IPR034733 Acetyl-CoA carboxylase LLC55_21460 IPR006352 Phosphoglucosamine mutase, bacterial type LLC55_21460 IPR016066 Alpha-D-phosphohexomutase, conserved site LLC55_21460 IPR005843 Alpha-D-phosphohexomutase, C-terminal LLC55_21460 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III LLC55_21460 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II LLC55_21460 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III LLC55_21460 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I LLC55_21460 IPR005841 Alpha-D-phosphohexomutase superfamily LLC55_21460 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily LLC55_21475 IPR001633 EAL domain LLC55_21475 IPR035919 EAL domain superfamily LLC55_21475 IPR000160 GGDEF domain LLC55_21475 IPR005330 MHYT domain LLC55_21475 IPR029787 Nucleotide cyclase LLC55_21505 IPR036291 NAD(P)-binding domain superfamily LLC55_21505 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_21510 IPR020861 Triosephosphate isomerase, active site LLC55_21510 IPR000652 Triosephosphate isomerase LLC55_21510 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic LLC55_21510 IPR035990 Triosephosphate isomerase superfamily LLC55_21510 IPR013785 Aldolase-type TIM barrel LLC55_21525 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid LLC55_21525 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 LLC55_21525 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily LLC55_21530 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit LLC55_21530 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit LLC55_21535 IPR010218 NADH dehydrogenase, subunit C LLC55_21535 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily LLC55_21535 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit LLC55_21535 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site LLC55_21540 IPR029014 [NiFe]-hydrogenase, large subunit LLC55_21540 IPR001135 NADH-quinone oxidoreductase, subunit D LLC55_21540 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily LLC55_21540 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H LLC55_21540 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site LLC55_21545 IPR036249 Thioredoxin-like superfamily LLC55_21545 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal LLC55_21545 IPR042128 NuoE domain LLC55_21545 IPR002023 NADH-quinone oxidoreductase subunit E-like LLC55_21550 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain LLC55_21550 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site LLC55_21550 IPR011537 NADH ubiquinone oxidoreductase, F subunit LLC55_21550 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain LLC55_21550 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily LLC55_21550 IPR019554 Soluble ligand binding domain LLC55_21550 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily LLC55_21555 IPR036010 2Fe-2S ferredoxin-like superfamily LLC55_21555 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain LLC55_21555 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site LLC55_21555 IPR010228 NADH:ubiquinone oxidoreductase, subunit G LLC55_21555 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding LLC55_21555 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal LLC55_21555 IPR006656 Molybdopterin oxidoreductase LLC55_21555 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain LLC55_21560 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H LLC55_21560 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site LLC55_21565 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_21565 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LLC55_21565 IPR010226 NADH-quinone oxidoreductase, chain I LLC55_21570 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 LLC55_21570 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ LLC55_21575 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K LLC55_21575 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like LLC55_21580 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup LLC55_21580 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 LLC55_21580 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LLC55_21580 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal LLC55_21585 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal LLC55_21585 IPR010227 NADH-quinone oxidoreductase, chain M/4 LLC55_21585 IPR003918 NADH:ubiquinone oxidoreductase LLC55_21585 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LLC55_21590 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 LLC55_21590 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit LLC55_21600 IPR028989 Ribosome maturation factor RimP, N-terminal LLC55_21600 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily LLC55_21600 IPR035956 RimP, N-terminal domain superfamily LLC55_21600 IPR003728 Ribosome maturation factor RimP LLC55_21600 IPR028998 Ribosome maturation factor RimP, C-terminal LLC55_21605 IPR012340 Nucleic acid-binding, OB-fold LLC55_21605 IPR030842 Transcription termination/antitermination protein NusA, bacterial LLC55_21605 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical LLC55_21605 IPR015946 K homology domain-like, alpha/beta LLC55_21605 IPR025249 KH domain, NusA-like LLC55_21605 IPR036555 NusA, N-terminal domain superfamily LLC55_21605 IPR022967 RNA-binding domain, S1 LLC55_21605 IPR013735 Transcription factor NusA, N-terminal LLC55_21605 IPR010214 Transcription termination factor NusA, C-terminal duplication LLC55_21605 IPR010213 Transcription termination factor NusA LLC55_21605 IPR009019 K homology domain superfamily, prokaryotic type LLC55_21605 IPR003029 S1 domain LLC55_21610 IPR023115 Translation initiation factor IF- 2, domain 3 LLC55_21610 IPR009061 Putative DNA-binding domain superfamily LLC55_21610 IPR013575 Initiation factor 2 associated domain, bacterial LLC55_21610 IPR006847 Translation initiation factor IF-2, N-terminal LLC55_21610 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_21610 IPR005225 Small GTP-binding protein domain LLC55_21610 IPR000795 Transcription factor, GTP-binding domain LLC55_21610 IPR000178 Translation initiation factor aIF-2, bacterial-like LLC55_21610 IPR015760 Translation initiation factor IF- 2 LLC55_21610 IPR036925 Translation initiation factor IF-2, domain 3 superfamily LLC55_21610 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_21615 IPR015946 K homology domain-like, alpha/beta LLC55_21615 IPR000238 Ribosome-binding factor A LLC55_21615 IPR023799 Ribosome-binding factor A domain superfamily LLC55_21615 IPR020053 Ribosome-binding factor A, conserved site LLC55_21620 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_21620 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal LLC55_21620 IPR002501 Pseudouridine synthase II, N-terminal LLC55_21620 IPR032819 tRNA pseudouridylate synthase B, C-terminal LLC55_21620 IPR015947 PUA-like superfamily LLC55_21620 IPR014780 tRNA pseudouridine synthase II, TruB LLC55_21625 IPR000589 Ribosomal protein S15 LLC55_21625 IPR005290 Ribosomal protein S15, bacterial-type LLC55_21625 IPR009068 S15/NS1, RNA-binding LLC55_21630 IPR003029 S1 domain LLC55_21630 IPR022967 RNA-binding domain, S1 LLC55_21630 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_21630 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily LLC55_21630 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain LLC55_21630 IPR027408 PNPase/RNase PH domain superfamily LLC55_21630 IPR012340 Nucleic acid-binding, OB-fold LLC55_21630 IPR036612 K Homology domain, type 1 superfamily LLC55_21630 IPR004088 K Homology domain, type 1 LLC55_21630 IPR004087 K Homology domain LLC55_21630 IPR036345 Exoribonuclease, PH domain 2 superfamily LLC55_21630 IPR015847 Exoribonuclease, phosphorolytic domain 2 LLC55_21630 IPR001247 Exoribonuclease, phosphorolytic domain 1 LLC55_21630 IPR012162 Polyribonucleotide nucleotidyltransferase LLC55_21640 IPR004393 Nicotinate-nucleotide pyrophosphorylase LLC55_21640 IPR013785 Aldolase-type TIM barrel LLC55_21640 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD LLC55_21640 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal LLC55_21640 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily LLC55_21640 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal LLC55_21640 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal LLC55_21650 IPR035893 PurE domain superfamily LLC55_21650 IPR000031 PurE domain LLC55_21650 IPR024694 PurE, prokaryotic type LLC55_21650 IPR033747 Class I PurE LLC55_21655 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain LLC55_21655 IPR011761 ATP-grasp fold LLC55_21655 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type LLC55_21655 IPR013815 ATP-grasp fold, subdomain 1 LLC55_21655 IPR016185 Pre-ATP-grasp domain superfamily LLC55_21655 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit LLC55_21655 IPR011054 Rudiment single hybrid motif LLC55_21660 IPR001189 Manganese/iron superoxide dismutase LLC55_21660 IPR019831 Manganese/iron superoxide dismutase, N-terminal LLC55_21660 IPR019833 Manganese/iron superoxide dismutase, binding site LLC55_21660 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily LLC55_21660 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily LLC55_21660 IPR019832 Manganese/iron superoxide dismutase, C-terminal LLC55_21665 IPR002109 Glutaredoxin LLC55_21665 IPR014434 Monothiol glutaredoxin LLC55_21665 IPR004480 Monothiol glutaredoxin-related LLC55_21665 IPR036249 Thioredoxin-like superfamily LLC55_21665 IPR033658 Glutaredoxin, PICOT-like LLC55_21675 IPR002771 Multiple antibiotic resistance (MarC)-related LLC55_21685 IPR039426 Vitamin B12 transporter BtuB-like LLC55_21685 IPR013784 Carbohydrate-binding-like fold LLC55_21685 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_21690 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily LLC55_21690 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal LLC55_21690 IPR031100 LOG family LLC55_21690 IPR021826 Domain of unknown function DUF3412 LLC55_21695 IPR012902 Prokaryotic N-terminal methylation site LLC55_21695 IPR022346 General secretion pathway, GspH LLC55_21695 IPR002416 Type II secretion system protein H LLC55_21715 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily LLC55_21715 IPR008707 PilC beta-propeller domain LLC55_21720 IPR031982 Type IV minor pilin ComP LLC55_21720 IPR012902 Prokaryotic N-terminal methylation site LLC55_21730 IPR001082 Fimbrial protein pilin LLC55_21730 IPR012902 Prokaryotic N-terminal methylation site LLC55_21735 IPR006935 Helicase/UvrB, N-terminal LLC55_21735 IPR014001 Helicase superfamily 1/2, ATP-binding domain LLC55_21735 IPR001650 Helicase, C-terminal LLC55_21735 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_21735 IPR001943 UVR domain LLC55_21735 IPR036876 UVR domain superfamily LLC55_21735 IPR004807 UvrABC system, subunit B LLC55_21735 IPR024759 UvrB, YAD/RRR-motif-containing domain LLC55_21735 IPR041471 UvrB, interaction domain LLC55_21765 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily LLC55_21765 IPR012947 Threonyl/alanyl tRNA synthetase, SAD LLC55_21765 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_21765 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) LLC55_21765 IPR012676 TGS-like LLC55_21765 IPR004095 TGS LLC55_21765 IPR002320 Threonine-tRNA ligase, class IIa LLC55_21765 IPR012675 Beta-grasp domain superfamily LLC55_21765 IPR036621 Anticodon-binding domain superfamily LLC55_21765 IPR033728 Threonine-tRNA ligase catalytic core domain LLC55_21765 IPR004154 Anticodon-binding LLC55_21770 IPR019815 Translation initiation factor 3, C-terminal LLC55_21770 IPR001288 Translation initiation factor 3 LLC55_21770 IPR019814 Translation initiation factor 3, N-terminal LLC55_21770 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily LLC55_21770 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily LLC55_21770 IPR019813 Translation initiation factor 3, conserved site LLC55_21775 IPR021137 Ribosomal protein L35 LLC55_21775 IPR018265 Ribosomal protein L35, conserved site LLC55_21775 IPR037229 Ribosomal protein L35 superfamily LLC55_21775 IPR001706 Ribosomal protein L35, non-mitochondrial LLC55_21780 IPR005813 Ribosomal protein L20 LLC55_21780 IPR035566 Ribosomal protein L20, C-terminal LLC55_21785 IPR006195 Aminoacyl-tRNA synthetase, class II LLC55_21785 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal LLC55_21785 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial LLC55_21785 IPR002319 Phenylalanyl-tRNA synthetase LLC55_21785 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm LLC55_21790 IPR009061 Putative DNA-binding domain superfamily LLC55_21790 IPR005146 B3/B4 tRNA-binding domain LLC55_21790 IPR005121 Ferrodoxin-fold anticodon-binding domain LLC55_21790 IPR012340 Nucleic acid-binding, OB-fold LLC55_21790 IPR005147 tRNA synthetase, B5-domain LLC55_21790 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain LLC55_21790 IPR002547 tRNA-binding domain LLC55_21790 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily LLC55_21790 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 LLC55_21790 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit LLC55_21790 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain LLC55_21795 IPR000119 Histone-like DNA-binding protein LLC55_21795 IPR020816 Histone-like DNA-binding protein, conserved site LLC55_21795 IPR005684 Integration host factor, alpha subunit LLC55_21795 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily LLC55_21800 IPR009061 Putative DNA-binding domain superfamily LLC55_21800 IPR000551 MerR-type HTH domain LLC55_21820 IPR003362 Bacterial sugar transferase LLC55_21820 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase LLC55_21820 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ LLC55_21840 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LLC55_21840 IPR001296 Glycosyl transferase, family 1 LLC55_21850 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain LLC55_21865 IPR004629 Glycosyl transferase WecB/TagA/CpsF LLC55_21865 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase LLC55_21895 IPR012674 Calycin LLC55_21895 IPR022271 Lipocalin, ApoD type LLC55_21895 IPR002446 Lipocalin, bacterial LLC55_21895 IPR022272 Lipocalin family conserved site LLC55_21895 IPR000566 Lipocalin/cytosolic fatty-acid binding domain LLC55_21980 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_21980 IPR035965 PAS domain superfamily LLC55_21980 IPR000700 PAS-associated, C-terminal LLC55_21980 IPR000014 PAS domain LLC55_21980 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_21980 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_21980 IPR005467 Histidine kinase domain LLC55_21980 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_21980 IPR011006 CheY-like superfamily LLC55_21980 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_21980 IPR001789 Signal transduction response regulator, receiver domain LLC55_21980 IPR001610 PAC motif LLC55_21985 IPR007457 Fe(II) trafficking protein YggX LLC55_21985 IPR036766 Fe(II) trafficking protein YggX superfamily LLC55_21990 IPR005760 A/G-specific adenine glycosylase MutY LLC55_21990 IPR011257 DNA glycosylase LLC55_21990 IPR004036 Endonuclease III-like, conserved site-2 LLC55_21990 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif LLC55_21990 IPR004035 Endonuclease III, iron-sulphur binding site LLC55_21990 IPR003265 HhH-GPD domain LLC55_21990 IPR000445 Helix-hairpin-helix motif LLC55_21990 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal LLC55_21990 IPR029119 MutY, C-terminal LLC55_21990 IPR015797 NUDIX hydrolase-like domain superfamily LLC55_22000 IPR004390 Signal-recognition particle receptor FtsY LLC55_22000 IPR003593 AAA+ ATPase domain LLC55_22000 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22000 IPR013822 Signal recognition particle SRP54, helical bundle LLC55_22000 IPR036225 SRP/SRP receptor, N-terminal LLC55_22000 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily LLC55_22000 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain LLC55_22010 IPR008794 Proline racemase family LLC55_22015 IPR006076 FAD dependent oxidoreductase LLC55_22015 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_22015 IPR012727 Glycine oxidase ThiO LLC55_22025 IPR023753 FAD/NAD(P)-binding domain LLC55_22025 IPR007419 BFD-like [2Fe-2S]-binding domain LLC55_22025 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily LLC55_22025 IPR036188 FAD/NAD(P)-binding domain superfamily LLC55_22025 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B LLC55_22030 IPR013785 Aldolase-type TIM barrel LLC55_22030 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA LLC55_22030 IPR002220 DapA-like LLC55_22030 IPR020625 Schiff base-forming aldolase, active site LLC55_22030 IPR020624 Schiff base-forming aldolase, conserved site LLC55_22035 IPR015590 Aldehyde dehydrogenase domain LLC55_22035 IPR016162 Aldehyde dehydrogenase, N-terminal LLC55_22035 IPR016161 Aldehyde/histidinol dehydrogenase LLC55_22035 IPR016163 Aldehyde dehydrogenase, C-terminal LLC55_22040 IPR036005 Creatinase/aminopeptidase-like LLC55_22040 IPR000994 Peptidase M24 LLC55_22040 IPR001714 Peptidase M24, methionine aminopeptidase LLC55_22040 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site LLC55_22040 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal LLC55_22040 IPR000587 Creatinase, N-terminal LLC55_22055 IPR002293 Amino acid/polyamine transporter I LLC55_22075 IPR000209 Peptidase S8/S53 domain LLC55_22075 IPR036852 Peptidase S8/S53 domain superfamily LLC55_22075 IPR023828 Peptidase S8, subtilisin, Ser-active site LLC55_22075 IPR015366 Peptidase S53, activation domain LLC55_22075 IPR030400 Sedolisin domain LLC55_22085 IPR039426 Vitamin B12 transporter BtuB-like LLC55_22085 IPR012910 TonB-dependent receptor, plug domain LLC55_22085 IPR037066 TonB-dependent receptor, plug domain superfamily LLC55_22085 IPR000531 TonB-dependent receptor-like, beta-barrel LLC55_22085 IPR010916 TonB box, conserved site LLC55_22085 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily LLC55_22085 IPR010917 TonB-dependent receptor, conserved site LLC55_22085 IPR010101 TonB-dependent vitamin B12 transporter BtuB LLC55_22090 IPR012341 Six-hairpin glycosidase-like superfamily LLC55_22090 IPR006311 Twin-arginine translocation pathway, signal sequence LLC55_22090 IPR008928 Six-hairpin glycosidase superfamily LLC55_22090 IPR008979 Galactose-binding-like domain superfamily LLC55_22090 IPR013783 Immunoglobulin-like fold LLC55_22090 IPR011081 Bacterial Ig-related LLC55_22095 IPR006710 Glycoside hydrolase, family 43 LLC55_22095 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily LLC55_22170 IPR036425 MoaB/Mog-like domain superfamily LLC55_22170 IPR001453 MoaB/Mog domain LLC55_22170 IPR008284 Molybdenum cofactor biosynthesis, conserved site LLC55_22170 IPR038987 Molybdopterin biosynthesis protein MoeA-like LLC55_22170 IPR005111 MoeA, C-terminal, domain IV LLC55_22170 IPR036688 MoeA, C-terminal, domain IV superfamily LLC55_22170 IPR005110 MoeA, N-terminal and linker domain LLC55_22170 IPR036135 MoeA, N-terminal and linker domain superfamily LLC55_22175 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_22175 IPR025877 MobA-like NTP transferase LLC55_22175 IPR013482 Molybdenum cofactor guanylyltransferase LLC55_22200 IPR012409 Sirohaem synthase LLC55_22200 IPR000878 Tetrapyrrole methylase LLC55_22200 IPR035996 Tetrapyrrole methylase superfamily LLC55_22200 IPR014777 Tetrapyrrole methylase, subdomain 1 LLC55_22200 IPR014776 Tetrapyrrole methylase, subdomain 2 LLC55_22200 IPR006366 Uroporphyrin-III C-methyltransferase LLC55_22200 IPR036291 NAD(P)-binding domain superfamily LLC55_22200 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site LLC55_22200 IPR028281 Siroheme synthase, central domain LLC55_22200 IPR019478 Sirohaem synthase, dimerisation domain LLC55_22200 IPR006367 Sirohaem synthase, N-terminal LLC55_22235 IPR008490 Transposase InsH, N-terminal LLC55_22235 IPR002559 Transposase, IS4-like LLC55_22240 IPR008490 Transposase InsH, N-terminal LLC55_22240 IPR002559 Transposase, IS4-like LLC55_22265 IPR008278 4'-phosphopantetheinyl transferase domain LLC55_22265 IPR037143 4'-phosphopantetheinyl transferase domain superfamily LLC55_22265 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain LLC55_22265 IPR003542 Enterobactin synthetase-like, component D LLC55_22275 IPR017476 UDP-glucose/GDP-mannose dehydrogenase LLC55_22275 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily LLC55_22275 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal LLC55_22275 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily LLC55_22275 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation LLC55_22275 IPR036291 NAD(P)-binding domain superfamily LLC55_22275 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal LLC55_22275 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase LLC55_22285 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain LLC55_22295 IPR002559 Transposase, IS4-like LLC55_22295 IPR008490 Transposase InsH, N-terminal LLC55_22300 IPR040503 UPF0176, acylphosphatase-like domain LLC55_22300 IPR036873 Rhodanese-like domain superfamily LLC55_22300 IPR001763 Rhodanese-like domain LLC55_22300 IPR020936 Uncharacterised protein family UPF0176 LLC55_22305 IPR011006 CheY-like superfamily LLC55_22305 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_22305 IPR001789 Signal transduction response regulator, receiver domain LLC55_22305 IPR000792 Transcription regulator LuxR, C-terminal LLC55_22315 IPR004659 Ribonuclease E/G LLC55_22315 IPR012340 Nucleic acid-binding, OB-fold LLC55_22315 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G LLC55_22315 IPR028878 Ribonuclease E LLC55_22315 IPR022967 RNA-binding domain, S1 LLC55_22315 IPR021968 Polyribonucleotide phosphorylase C-terminal LLC55_22315 IPR003029 S1 domain LLC55_22320 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_22320 IPR006225 Pseudouridine synthase, RluC/RluD LLC55_22320 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site LLC55_22320 IPR006145 Pseudouridine synthase, RsuA/RluA LLC55_22320 IPR002942 RNA-binding S4 domain LLC55_22320 IPR036986 RNA-binding S4 domain superfamily LLC55_22325 IPR021728 Protein of unknown function DUF3300 LLC55_22340 IPR001533 Pterin 4 alpha carbinolamine dehydratase LLC55_22340 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily LLC55_22345 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal LLC55_22345 IPR035903 HesB-like domain superfamily LLC55_22345 IPR034904 Fe-S cluster assembly domain superfamily LLC55_22345 IPR017726 Fe/S biogenesis protein NfuA LLC55_22380 IPR001598 Transposase, IS30, conserved site LLC55_22380 IPR012337 Ribonuclease H-like superfamily LLC55_22380 IPR001584 Integrase, catalytic core LLC55_22380 IPR009057 Homeobox-like domain superfamily LLC55_22380 IPR036397 Ribonuclease H superfamily LLC55_22395 IPR008490 Transposase InsH, N-terminal LLC55_22395 IPR002559 Transposase, IS4-like LLC55_22410 IPR008490 Transposase InsH, N-terminal LLC55_22410 IPR002559 Transposase, IS4-like LLC55_22420 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 LLC55_22425 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath LLC55_22430 IPR036624 Hcp1-like superfamily LLC55_22430 IPR008514 Type VI secretion system effector, Hcp LLC55_22435 IPR011990 Tetratricopeptide-like helical domain superfamily LLC55_22435 IPR009211 Predicted virulence protein, SciE type LLC55_22440 IPR007048 IraD/Gp25-like LLC55_22440 IPR017737 Type VI secretion system-related protein LLC55_22445 IPR010272 Type VI secretion system, TssF-like LLC55_22455 IPR041546 ClpA/ClpB, AAA lid domain LLC55_22455 IPR018368 ClpA/B, conserved site 1 LLC55_22455 IPR003593 AAA+ ATPase domain LLC55_22455 IPR003959 ATPase, AAA-type, core LLC55_22455 IPR017729 Type VI secretion system, ATPase ClpV1 LLC55_22455 IPR019489 Clp ATPase, C-terminal LLC55_22455 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22455 IPR036628 Clp, N-terminal domain superfamily LLC55_22455 IPR004176 Clp, N-terminal LLC55_22455 IPR001270 ClpA/B family LLC55_22480 IPR037026 Vgr protein, OB-fold domain superfamily LLC55_22480 IPR006531 Gp5 N-terminal LLC55_22480 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein LLC55_22480 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset LLC55_22480 IPR010609 Gp5, C-terminal LLC55_22495 IPR010263 Type VI secretion protein, VC_A0114 LLC55_22505 IPR010623 Type VI secretion system IcmF, C-terminal LLC55_22505 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22505 IPR017731 Type VI secretion system, IcmF LLC55_22505 IPR009612 IcmF-related LLC55_22505 IPR025743 IcmF-related, N-terminal domain LLC55_22515 IPR001932 PPM-type phosphatase domain LLC55_22515 IPR036457 PPM-type phosphatase domain superfamily LLC55_22515 IPR015655 Protein phosphatase 2C family LLC55_22520 IPR008271 Serine/threonine-protein kinase, active site LLC55_22520 IPR011009 Protein kinase-like domain superfamily LLC55_22520 IPR000719 Protein kinase domain LLC55_22540 IPR010657 ImpA, N-terminal LLC55_22540 IPR017740 Type VI secretion system-associated, ImpA LLC55_22545 IPR036390 Winged helix DNA-binding domain superfamily LLC55_22545 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_22545 IPR000847 Transcription regulator HTH, LysR LLC55_22545 IPR037416 Nodulation protein D, PBP2 LLC55_22545 IPR005119 LysR, substrate-binding LLC55_22550 IPR004358 Signal transduction histidine kinase-related protein, C-terminal LLC55_22550 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain LLC55_22550 IPR005467 Histidine kinase domain LLC55_22550 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_22550 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_22550 IPR001789 Signal transduction response regulator, receiver domain LLC55_22550 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily LLC55_22555 IPR009056 Cytochrome c-like domain LLC55_22555 IPR036909 Cytochrome c-like domain superfamily LLC55_22555 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase LLC55_22555 IPR004852 Di-haem cytochrome c peroxidase LLC55_22560 IPR011006 CheY-like superfamily LLC55_22560 IPR001867 OmpR/PhoB-type DNA-binding domain LLC55_22560 IPR016032 Signal transduction response regulator, C-terminal effector LLC55_22560 IPR001789 Signal transduction response regulator, receiver domain LLC55_22560 IPR039420 Transcriptional regulatory protein WalR-like LLC55_22560 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_22605 IPR009057 Homeobox-like domain superfamily LLC55_22605 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily LLC55_22610 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain LLC55_22610 IPR006143 RND efflux pump, membrane fusion protein LLC55_22635 IPR005042 TAL effector repeat LLC55_22650 IPR005042 TAL effector repeat LLC55_22665 IPR005042 TAL effector repeat LLC55_22675 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily LLC55_22675 IPR005616 CcmH/CycL/Ccl2/NrfF family LLC55_22680 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE LLC55_22680 IPR013766 Thioredoxin domain LLC55_22680 IPR017937 Thioredoxin, conserved site LLC55_22680 IPR036249 Thioredoxin-like superfamily LLC55_22680 IPR013740 Redoxin LLC55_22685 IPR003568 Cytochrome c-type biogenesis protein CcmF LLC55_22685 IPR003567 Cytochrome c-type biogenesis protein LLC55_22685 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal LLC55_22685 IPR002541 Cytochrome c assembly protein LLC55_22690 IPR036127 CcmE-like superfamily LLC55_22690 IPR004329 CcmE/CycJ protein LLC55_22695 IPR007078 Haem exporter protein D (CcmD) LLC55_22700 IPR002541 Cytochrome c assembly protein LLC55_22700 IPR003557 Cytochrome c-type biogenesis protein CcmC LLC55_22705 IPR015500 Peptidase S8, subtilisin-related LLC55_22705 IPR036852 Peptidase S8/S53 domain superfamily LLC55_22705 IPR034084 Thermitase-like, domain LLC55_22705 IPR022398 Peptidase S8, subtilisin, His-active site LLC55_22705 IPR000209 Peptidase S8/S53 domain LLC55_22705 IPR023828 Peptidase S8, subtilisin, Ser-active site LLC55_22705 IPR023827 Peptidase S8, subtilisin, Asp-active site LLC55_22715 IPR039425 RNA polymerase sigma-70 like LLC55_22715 IPR014284 RNA polymerase sigma-70 like domain LLC55_22715 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site LLC55_22715 IPR007627 RNA polymerase sigma-70 region 2 LLC55_22715 IPR014286 RNA polymerase sigma-70 RpoE type LLC55_22715 IPR013325 RNA polymerase sigma factor, region 2 LLC55_22715 IPR013324 RNA polymerase sigma factor, region 3/4-like LLC55_22715 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_22715 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 LLC55_22725 IPR009056 Cytochrome c-like domain LLC55_22725 IPR036909 Cytochrome c-like domain superfamily LLC55_22725 IPR002327 Cytochrome c, class IA/ IB LLC55_22740 IPR011051 RmlC-like cupin domain superfamily LLC55_22740 IPR008894 WxcM-like, C-terminal LLC55_22740 IPR014710 RmlC-like jelly roll fold LLC55_22760 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_22760 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase LLC55_22760 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_22760 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_22765 IPR032896 Lipid III flippase WzxE LLC55_22765 IPR002797 Polysaccharide biosynthesis protein LLC55_22770 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_22770 IPR001173 Glycosyltransferase 2-like LLC55_22785 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_22785 IPR013216 Methyltransferase type 11 LLC55_22795 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_22795 IPR004498 Ribosomal protein L11 methyltransferase LLC55_22805 IPR001296 Glycosyl transferase, family 1 LLC55_22805 IPR017814 Mycothiol biosynthesis protein, MshA LLC55_22805 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain LLC55_22810 IPR001598 Transposase, IS30, conserved site LLC55_22810 IPR036397 Ribonuclease H superfamily LLC55_22810 IPR012337 Ribonuclease H-like superfamily LLC55_22810 IPR001584 Integrase, catalytic core LLC55_22810 IPR009057 Homeobox-like domain superfamily LLC55_22825 IPR015854 ABC transporter, lipoprotein release, LolD LLC55_22825 IPR011924 Lipoprotein releasing system, ATP-binding protein LLC55_22825 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22825 IPR003439 ABC transporter-like LLC55_22825 IPR003593 AAA+ ATPase domain LLC55_22830 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22830 IPR003593 AAA+ ATPase domain LLC55_22830 IPR011527 ABC transporter type 1, transmembrane domain LLC55_22830 IPR036640 ABC transporter type 1, transmembrane domain superfamily LLC55_22830 IPR003439 ABC transporter-like LLC55_22830 IPR017871 ABC transporter, conserved site LLC55_22830 IPR011917 ABC transporter, lipid A export, MsbA LLC55_22830 IPR039421 Type I protein exporter LLC55_22840 IPR005829 Sugar transporter, conserved site LLC55_22840 IPR036259 MFS transporter superfamily LLC55_22840 IPR020846 Major facilitator superfamily domain LLC55_22840 IPR011701 Major facilitator superfamily LLC55_22850 IPR011251 Luciferase-like domain LLC55_22850 IPR036661 Luciferase-like domain superfamily LLC55_22850 IPR019949 Luciferase family oxidoreductase, group 1 LLC55_22865 IPR036318 FAD-binding, type PCMH-like superfamily LLC55_22865 IPR016169 FAD-binding, type PCMH, subdomain 2 LLC55_22865 IPR005170 Transporter-associated domain LLC55_22865 IPR000644 CBS domain LLC55_22865 IPR002550 CNNM, transmembrane domain LLC55_22875 IPR001204 Phosphate transporter LLC55_22880 IPR003848 Domain of unknown function DUF218 LLC55_22895 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal LLC55_22895 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 LLC55_22895 IPR018522 DNA topoisomerase, type IIA, conserved site LLC55_22895 IPR036890 Histidine kinase/HSP90-like ATPase superfamily LLC55_22895 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative LLC55_22895 IPR006171 TOPRIM domain LLC55_22895 IPR013760 DNA topoisomerase, type IIA-like domain superfamily LLC55_22895 IPR001241 DNA topoisomerase, type IIA LLC55_22895 IPR002288 DNA gyrase B subunit, C-terminal LLC55_22895 IPR020568 Ribosomal protein S5 domain 2-type fold LLC55_22895 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup LLC55_22895 IPR003594 Histidine kinase/HSP90-like ATPase LLC55_22905 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22905 IPR033828 CTP synthase GATase domain LLC55_22905 IPR017456 CTP synthase, N-terminal LLC55_22905 IPR004468 CTP synthase LLC55_22905 IPR017926 Glutamine amidotransferase LLC55_22905 IPR029062 Class I glutamine amidotransferase-like LLC55_22910 IPR013785 Aldolase-type TIM barrel LLC55_22910 IPR006218 DAHP synthetase I/KDSA LLC55_22910 IPR006269 3-deoxy-8-phosphooctulonate synthase LLC55_22920 IPR020809 Enolase, conserved site LLC55_22920 IPR029017 Enolase-like, N-terminal LLC55_22920 IPR020811 Enolase, N-terminal LLC55_22920 IPR000941 Enolase LLC55_22920 IPR036849 Enolase-like, C-terminal domain superfamily LLC55_22920 IPR020810 Enolase, C-terminal TIM barrel domain LLC55_22925 IPR023081 Cell division protein FtsB LLC55_22925 IPR007060 Septum formation initiator FtsL/DivIC LLC55_22930 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LLC55_22930 IPR034683 Cytidylyltransferase IspD/TarI LLC55_22930 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site LLC55_22930 IPR029044 Nucleotide-diphospho-sugar transferases LLC55_22940 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase LLC55_22940 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site LLC55_22940 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily LLC55_22945 IPR020119 Pseudouridine synthase TruD, conserved site LLC55_22945 IPR042214 Pseudouridine synthase, TruD, catalytic domain LLC55_22945 IPR011760 Pseudouridine synthase, TruD, insertion domain LLC55_22945 IPR001656 Pseudouridine synthase, TruD LLC55_22945 IPR020103 Pseudouridine synthase, catalytic domain superfamily LLC55_22950 IPR002625 Smr domain LLC55_22950 IPR036063 Smr domain superfamily LLC55_22950 IPR022990 Uncharacterised protein family UPF0115 LLC55_22955 IPR030048 Survival protein SurE LLC55_22955 IPR002828 Survival protein SurE-like phosphatase/nucleotidase LLC55_22955 IPR036523 SurE-like phosphatase/nucleotidase superfamily LLC55_22960 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase LLC55_22960 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_22965 IPR032816 SNARE associated Golgi protein LLC55_22970 IPR036779 LysM domain superfamily LLC55_22970 IPR018392 LysM domain LLC55_22970 IPR016047 Peptidase M23 LLC55_22970 IPR011055 Duplicated hybrid motif LLC55_22980 IPR017924 RNA-binding protein YhbY LLC55_22980 IPR001890 RNA-binding, CRM domain LLC55_22980 IPR035920 YhbY-like superfamily LLC55_22985 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase LLC55_22985 IPR002877 Ribosomal RNA methyltransferase FtsJ domain LLC55_22985 IPR015507 Ribosomal RNA large subunit methyltransferase E LLC55_22990 IPR000642 Peptidase M41 LLC55_22990 IPR003593 AAA+ ATPase domain LLC55_22990 IPR041569 AAA ATPase, AAA+ lid domain LLC55_22990 IPR003959 ATPase, AAA-type, core LLC55_22990 IPR003960 ATPase, AAA-type, conserved site LLC55_22990 IPR005936 Peptidase, FtsH LLC55_22990 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_22990 IPR011546 Peptidase M41, FtsH extracellular LLC55_22990 IPR037219 Peptidase M41-like LLC55_22995 IPR011005 Dihydropteroate synthase-like LLC55_22995 IPR006390 Dihydropteroate synthase LLC55_22995 IPR000489 Pterin-binding domain LLC55_23000 IPR039657 Dimethylallyltransferase LLC55_23000 IPR018022 IPP transferase LLC55_23000 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23005 IPR005001 RNA-binding protein Hfq LLC55_23005 IPR010920 LSM domain superfamily LLC55_23010 IPR025121 GTPase HflX, N-terminal LLC55_23010 IPR042108 GTPase HflX, N-terminal domain superfamily LLC55_23010 IPR016496 GTPase HflX LLC55_23010 IPR006073 GTP binding domain LLC55_23010 IPR032305 GTP-binding protein, middle domain LLC55_23010 IPR035647 EF-G domain III/V-like LLC55_23010 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23010 IPR030394 HflX-type guanine nucleotide-binding (G) domain LLC55_23015 IPR008136 CinA, C-terminal LLC55_23015 IPR036653 CinA-like, C-terminal LLC55_23020 IPR010232 Probable protein kinase UbiB LLC55_23020 IPR004147 UbiB domain LLC55_23020 IPR011009 Protein kinase-like domain superfamily LLC55_23025 IPR006200 Transcription regulator LexA LLC55_23025 IPR039418 LexA-like LLC55_23025 IPR036286 LexA/Signal peptidase-like superfamily LLC55_23025 IPR006199 LexA repressor, DNA-binding domain LLC55_23025 IPR006197 Peptidase S24, LexA-like LLC55_23025 IPR015927 Peptidase S24/S26A/S26B/S26C LLC55_23025 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_23025 IPR036390 Winged helix DNA-binding domain superfamily LLC55_23030 IPR023400 DNA recombination and repair protein RecA, C-terminal LLC55_23030 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface LLC55_23030 IPR003593 AAA+ ATPase domain LLC55_23030 IPR013765 DNA recombination and repair protein RecA LLC55_23030 IPR020584 DNA recombination/repair protein RecA, conserved site LLC55_23030 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23030 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain LLC55_23035 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_23035 IPR003783 Regulatory protein RecX LLC55_23040 IPR002318 Alanine-tRNA ligase, class IIc LLC55_23040 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily LLC55_23040 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain LLC55_23040 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal LLC55_23040 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria LLC55_23040 IPR003156 DHHA1 domain LLC55_23040 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily LLC55_23040 IPR009000 Translation protein, beta-barrel domain superfamily LLC55_23040 IPR012947 Threonyl/alanyl tRNA synthetase, SAD LLC55_23045 IPR003751 Translational regulator CsrA LLC55_23045 IPR036107 Carbon storage regulator superfamily LLC55_23065 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal LLC55_23065 IPR007693 DNA helicase, DnaB-like, N-terminal LLC55_23065 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23065 IPR007692 DNA helicase, DnaB type LLC55_23065 IPR007694 DNA helicase, DnaB-like, C-terminal LLC55_23065 IPR003593 AAA+ ATPase domain LLC55_23065 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily LLC55_23070 IPR039657 Dimethylallyltransferase LLC55_23070 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23070 IPR002648 Adenylate dimethylallyltransferase LLC55_23085 IPR012093 Pirin LLC55_23085 IPR003829 Pirin, N-terminal domain LLC55_23085 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain LLC55_23085 IPR014710 RmlC-like jelly roll fold LLC55_23085 IPR011051 RmlC-like cupin domain superfamily LLC55_23090 IPR036390 Winged helix DNA-binding domain superfamily LLC55_23090 IPR005119 LysR, substrate-binding LLC55_23090 IPR000847 Transcription regulator HTH, LysR LLC55_23090 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_23115 IPR029056 Ribokinase-like LLC55_23115 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase LLC55_23115 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase LLC55_23125 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23125 IPR003714 PhoH-like protein LLC55_23125 IPR029060 PIN-like domain superfamily LLC55_23125 IPR002716 PIN domain LLC55_23130 IPR036249 Thioredoxin-like superfamily LLC55_23130 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant LLC55_23130 IPR013766 Thioredoxin domain LLC55_23145 IPR020624 Schiff base-forming aldolase, conserved site LLC55_23145 IPR020625 Schiff base-forming aldolase, active site LLC55_23145 IPR013785 Aldolase-type TIM barrel LLC55_23145 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA LLC55_23145 IPR002220 DapA-like LLC55_23155 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain LLC55_23155 IPR000813 7Fe ferredoxin LLC55_23155 IPR022569 Ferredoxin, C-terminal LLC55_23155 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site LLC55_23160 IPR042257 2-keto-3-deoxy-galactonokinase, C-terminal domain LLC55_23160 IPR007729 2-keto-3-deoxy-galactonokinase LLC55_23160 IPR042258 2-keto-3-deoxy-galactonokinase, N-terminal LLC55_23165 IPR011042 Six-bladed beta-propeller, TolB-like LLC55_23165 IPR013658 SMP-30/Gluconolactonase/LRE-like region LLC55_23165 IPR005511 Senescence marker protein-30 (SMP-30) LLC55_23170 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal LLC55_23170 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain LLC55_23170 IPR036849 Enolase-like, C-terminal domain superfamily LLC55_23170 IPR029017 Enolase-like, N-terminal LLC55_23170 IPR029065 Enolase C-terminal domain-like LLC55_23170 IPR023592 D-galactonate dehydratase LLC55_23170 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site LLC55_23170 IPR034593 Mandelate racemase-like LLC55_23175 IPR013785 Aldolase-type TIM barrel LLC55_23175 IPR000887 KDPG/KHG aldolase LLC55_23180 IPR037405 HTH-type transcriptional regulator GbpR, PBP2 domain LLC55_23180 IPR005119 LysR, substrate-binding LLC55_23180 IPR000847 Transcription regulator HTH, LysR LLC55_23180 IPR036388 Winged helix-like DNA-binding domain superfamily LLC55_23180 IPR036390 Winged helix DNA-binding domain superfamily LLC55_23190 IPR017853 Glycoside hydrolase superfamily LLC55_23190 IPR013780 Glycosyl hydrolase, all-beta LLC55_23190 IPR037524 PA14/GLEYA domain LLC55_23190 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 LLC55_23190 IPR033403 Domain of unknown function DUF5110 LLC55_23190 IPR011013 Galactose mutarotase-like domain superfamily LLC55_23190 IPR000322 Glycoside hydrolase family 31 LLC55_23200 IPR018484 Carbohydrate kinase, FGGY, N-terminal LLC55_23200 IPR018483 Carbohydrate kinase, FGGY, conserved site LLC55_23200 IPR006000 Xylulokinase LLC55_23200 IPR000577 Carbohydrate kinase, FGGY LLC55_23200 IPR018485 Carbohydrate kinase, FGGY, C-terminal LLC55_23205 IPR013452 Xylose isomerase, bacterial-type LLC55_23205 IPR001998 Xylose isomerase LLC55_23205 IPR036237 Xylose isomerase-like superfamily LLC55_23210 IPR020846 Major facilitator superfamily domain LLC55_23210 IPR005828 Major facilitator, sugar transporter-like LLC55_23210 IPR036259 MFS transporter superfamily LLC55_23210 IPR003663 Sugar/inositol transporter LLC55_23210 IPR005829 Sugar transporter, conserved site LLC55_23230 IPR013852 Translation elongation factor P/YeiP, conserved site LLC55_23230 IPR001059 Translation elongation factor P/YeiP, central LLC55_23230 IPR011897 Translation elongation factor P-like, YeiP LLC55_23230 IPR013185 Translation elongation factor, KOW-like LLC55_23230 IPR012340 Nucleic acid-binding, OB-fold LLC55_23230 IPR014722 Ribosomal protein L2, domain 2 LLC55_23230 IPR008991 Translation protein SH3-like domain superfamily LLC55_23230 IPR015365 Elongation factor P, C-terminal LLC55_23230 IPR020599 Translation elongation factor P/YeiP LLC55_23235 IPR020904 Short-chain dehydrogenase/reductase, conserved site LLC55_23235 IPR002347 Short-chain dehydrogenase/reductase SDR LLC55_23235 IPR036291 NAD(P)-binding domain superfamily LLC55_23240 IPR013785 Aldolase-type TIM barrel LLC55_23240 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site LLC55_23240 IPR000891 Pyruvate carboxyltransferase LLC55_23250 IPR029045 ClpP/crotonase-like domain superfamily LLC55_23250 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site LLC55_23250 IPR001753 Enoyl-CoA hydratase/isomerase LLC55_23250 IPR014748 Enoyl-CoA hydratase, C-terminal LLC55_23260 IPR011640 Ferrous iron transport protein B, C-terminal LLC55_23260 IPR003373 Ferrous iron transport protein B LLC55_23260 IPR030389 FeoB-type guanine nucleotide-binding (G) domain LLC55_23260 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain LLC55_23260 IPR006073 GTP binding domain LLC55_23260 IPR027417 P-loop containing nucleoside triphosphate hydrolase LLC55_23275 IPR015424 Pyridoxal phosphate-dependent transferase LLC55_23275 IPR015421 Pyridoxal phosphate-dependent transferase, major domain LLC55_23275 IPR004839 Aminotransferase, class I/classII LLC55_23275 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 LLC55_23280 IPR011037 Pyruvate kinase-like, insert domain superfamily LLC55_23280 IPR005163 3-alpha domain LLC55_23280 IPR005302 Molybdenum cofactor sulfurase, C-terminal LLC55_23290 IPR022663 Dihydrodipicolinate reductase, C-terminal LLC55_23290 IPR000846 Dihydrodipicolinate reductase, N-terminal LLC55_23290 IPR022664 Dihydrodipicolinate reductase, conserved site LLC55_23290 IPR023940 Dihydrodipicolinate reductase LLC55_23290 IPR036291 NAD(P)-binding domain superfamily LLC55_23295 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily LLC55_23295 IPR006274 Carbamoyl-phosphate synthase, small subunit LLC55_23295 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain LLC55_23295 IPR029062 Class I glutamine amidotransferase-like LLC55_23295 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain LLC55_23295 IPR017926 Glutamine amidotransferase LLC55_23305 IPR036914 Methylglyoxal synthase-like domain superfamily LLC55_23305 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily LLC55_23305 IPR016185 Pre-ATP-grasp domain superfamily LLC55_23305 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain LLC55_23305 IPR011607 Methylglyoxal synthase-like domain LLC55_23305 IPR011761 ATP-grasp fold LLC55_23305 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain LLC55_23305 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain LLC55_23305 IPR006275 Carbamoyl-phosphate synthase, large subunit LLC55_23305 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain LLC55_23310 IPR023459 Transcription elongation factor GreA/GreB family LLC55_23310 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal LLC55_23310 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal LLC55_23310 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily LLC55_23310 IPR006359 Transcription elongation factor GreA LLC55_23310 IPR018151 Transcription elongation factor, GreA/GreB, conserved site LLC55_23310 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily LLC55_23310 IPR028624 Transcription elongation factor GreA/GreB LLC55_23320 IPR003156 DHHA1 domain LLC55_23320 IPR004610 Bacterial RecJ exonuclease LLC55_23320 IPR001667 DDH domain LLC55_23320 IPR038763 DHH phosphoesterase superfamily LLC55_23320 IPR041122 RecJ, OB domain