locus-tag class description IXO608_000020 PF03377 TAL effector repeat IXO608_000035 PF03377 TAL effector repeat IXO608_000045 PF03918 Cytochrome C biogenesis protein IXO608_000050 PF08534 Redoxin IXO608_000055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IXO608_000055 PF01578 Cytochrome C assembly protein IXO608_000060 PF03100 CcmE IXO608_000065 PF04995 Heme exporter protein D (CcmD) IXO608_000070 PF01578 Cytochrome C assembly protein IXO608_000075 PF00082 Subtilase family IXO608_000085 PF08281 Sigma-70, region 4 IXO608_000085 PF04542 Sigma-70 region 2 IXO608_000095 PF00034 Cytochrome c IXO608_000110 PF05523 WxcM-like, C-terminal IXO608_000130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IXO608_000135 PF01943 Polysaccharide biosynthesis protein IXO608_000140 PF00535 Glycosyl transferase family 2 IXO608_000155 PF08241 Methyltransferase domain IXO608_000175 PF00534 Glycosyl transferases group 1 IXO608_000175 PF13579 Glycosyl transferase 4-like domain IXO608_000195 PF00005 ABC transporter IXO608_000200 PF00005 ABC transporter IXO608_000200 PF00664 ABC transporter transmembrane region IXO608_000210 PF07690 Major Facilitator Superfamily IXO608_000220 PF00296 Luciferase-like monooxygenase IXO608_000235 PF01595 Cyclin M transmembrane N-terminal domain IXO608_000235 PF00571 CBS domain IXO608_000235 PF03471 Transporter associated domain IXO608_000245 PF01384 Phosphate transporter family IXO608_000250 PF02698 DUF218 domain IXO608_000265 PF01751 Toprim domain IXO608_000265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_000265 PF00204 DNA gyrase B IXO608_000265 PF00986 DNA gyrase B subunit, carboxyl terminus IXO608_000275 PF06418 CTP synthase N-terminus IXO608_000275 PF00117 Glutamine amidotransferase class-I IXO608_000280 PF00793 DAHP synthetase I family IXO608_000290 PF00113 Enolase, C-terminal TIM barrel domain IXO608_000290 PF03952 Enolase, N-terminal domain IXO608_000295 PF04977 Septum formation initiator IXO608_000300 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IXO608_000310 PF02542 YgbB family IXO608_000315 PF01142 tRNA pseudouridine synthase D (TruD) IXO608_000320 PF01713 Smr domain IXO608_000325 PF01975 Survival protein SurE IXO608_000335 PF09335 SNARE associated Golgi protein IXO608_000340 PF01476 LysM domain IXO608_000340 PF01551 Peptidase family M23 IXO608_000350 PF01985 CRS1 / YhbY (CRM) domain IXO608_000355 PF01728 FtsJ-like methyltransferase IXO608_000360 PF01434 Peptidase family M41 IXO608_000360 PF06480 FtsH Extracellular IXO608_000360 PF17862 AAA+ lid domain IXO608_000360 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_000365 PF00809 Pterin binding enzyme IXO608_000375 PF17209 Hfq protein IXO608_000380 PF01926 50S ribosome-binding GTPase IXO608_000380 PF16360 GTP-binding GTPase Middle Region IXO608_000380 PF13167 GTP-binding GTPase N-terminal IXO608_000385 PF02464 Competence-damaged protein IXO608_000390 PF03109 ABC1 family IXO608_000395 PF01726 LexA DNA binding domain IXO608_000395 PF00717 Peptidase S24-like IXO608_000400 PF00154 recA bacterial DNA recombination protein IXO608_000405 PF02631 RecX family IXO608_000410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IXO608_000410 PF01411 tRNA synthetases class II (A) IXO608_000410 PF02272 DHHA1 domain IXO608_000415 PF02599 Global regulator protein family IXO608_000435 PF03796 DnaB-like helicase C terminal domain IXO608_000435 PF00772 DnaB-like helicase N terminal domain IXO608_000460 PF17954 Quercetinase C-terminal cupin domain IXO608_000460 PF02678 Pirin IXO608_000465 PF03466 LysR substrate binding domain IXO608_000465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_000495 PF08543 Phosphomethylpyrimidine kinase IXO608_000505 PF02562 PhoH-like protein IXO608_000505 PF13638 PIN domain IXO608_000510 PF00578 AhpC/TSA family IXO608_000525 PF00701 Dihydrodipicolinate synthetase family IXO608_000535 PF00037 4Fe-4S binding domain IXO608_000535 PF11953 Domain of unknown function (DUF3470) IXO608_000540 PF05035 2-keto-3-deoxy-galactonokinase IXO608_000545 PF08450 SMP-30/Gluconolactonase/LRE-like region IXO608_000550 PF13378 Enolase C-terminal domain-like IXO608_000550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IXO608_000555 PF01081 KDPG and KHG aldolase IXO608_000560 PF03466 LysR substrate binding domain IXO608_000560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_000570 PF01055 Glycosyl hydrolases family 31 IXO608_000570 PF17137 Domain of unknown function (DUF5110) IXO608_000570 PF16338 Domain of unknown function (DUF4968) IXO608_000580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IXO608_000580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IXO608_000590 PF00083 Sugar (and other) transporter IXO608_000610 PF09285 Elongation factor P, C-terminal IXO608_000610 PF08207 Elongation factor P (EF-P) KOW-like domain IXO608_000610 PF01132 Elongation factor P (EF-P) OB domain IXO608_000615 PF00106 short chain dehydrogenase IXO608_000620 PF00682 HMGL-like IXO608_000630 PF00378 Enoyl-CoA hydratase/isomerase IXO608_000640 PF07670 Nucleoside recognition IXO608_000640 PF02421 Ferrous iron transport protein B IXO608_000640 PF07664 Ferrous iron transport protein B C terminus IXO608_000660 PF00155 Aminotransferase class I and II IXO608_000665 PF03475 3-alpha domain IXO608_000665 PF03473 MOSC domain IXO608_000675 PF01113 Dihydrodipicolinate reductase, N-terminus IXO608_000675 PF05173 Dihydrodipicolinate reductase, C-terminus IXO608_000680 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IXO608_000680 PF00117 Glutamine amidotransferase class-I IXO608_000690 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IXO608_000690 PF02142 MGS-like domain IXO608_000690 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IXO608_000695 PF01272 Transcription elongation factor, GreA/GreB, C-term IXO608_000695 PF03449 Transcription elongation factor, N-terminal IXO608_000705 PF17768 RecJ OB domain IXO608_000705 PF02272 DHHA1 domain IXO608_000705 PF01368 DHH family IXO608_000740 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IXO608_000740 PF13542 Helix-turn-helix domain of transposase family ISL3 IXO608_000740 PF01610 Transposase IXO608_000765 PF01336 OB-fold nucleic acid binding domain IXO608_000765 PF00152 tRNA synthetases class II (D, K and N) IXO608_000770 PF00072 Response regulator receiver domain IXO608_000775 PF01627 Hpt domain IXO608_000775 PF00072 Response regulator receiver domain IXO608_000775 PF00512 His Kinase A (phospho-acceptor) domain IXO608_000775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_000780 PF00378 Enoyl-CoA hydratase/isomerase IXO608_000785 PF13193 AMP-binding enzyme C-terminal domain IXO608_000785 PF00501 AMP-binding enzyme IXO608_000795 PF00694 Aconitase C-terminal domain IXO608_000795 PF00330 Aconitase family (aconitate hydratase) IXO608_000810 PF11791 Aconitate B N-terminal domain IXO608_000810 PF06434 Aconitate hydratase 2 N-terminus IXO608_000810 PF00330 Aconitase family (aconitate hydratase) IXO608_000815 PF00561 alpha/beta hydrolase fold IXO608_000825 PF03707 Bacterial signalling protein N terminal repeat IXO608_000825 PF00990 Diguanylate cyclase, GGDEF domain IXO608_000825 PF00563 EAL domain IXO608_000830 PF01339 CheB methylesterase IXO608_000830 PF00072 Response regulator receiver domain IXO608_000835 PF03975 CheD chemotactic sensory transduction IXO608_000840 PF03705 CheR methyltransferase, all-alpha domain IXO608_000840 PF01739 CheR methyltransferase, SAM binding domain IXO608_000845 PF02203 Tar ligand binding domain homologue IXO608_000845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000845 PF00672 HAMP domain IXO608_000865 PF01584 CheW-like domain IXO608_000870 PF07317 Flagellar regulator YcgR IXO608_000870 PF07238 PilZ domain IXO608_000890 PF02203 Tar ligand binding domain homologue IXO608_000890 PF00672 HAMP domain IXO608_000890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000895 PF00672 HAMP domain IXO608_000895 PF02203 Tar ligand binding domain homologue IXO608_000900 PF00672 HAMP domain IXO608_000900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000900 PF02203 Tar ligand binding domain homologue IXO608_000910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000910 PF02203 Tar ligand binding domain homologue IXO608_000910 PF00672 HAMP domain IXO608_000920 PF00672 HAMP domain IXO608_000920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000920 PF02203 Tar ligand binding domain homologue IXO608_000930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_000930 PF00672 HAMP domain IXO608_000930 PF02203 Tar ligand binding domain homologue IXO608_000945 PF02895 Signal transducing histidine kinase, homodimeric domain IXO608_000945 PF09078 CheY binding IXO608_000945 PF01584 CheW-like domain IXO608_000945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_000945 PF01627 Hpt domain IXO608_000950 PF00072 Response regulator receiver domain IXO608_000960 PF01584 CheW-like domain IXO608_000965 PF13614 AAA domain IXO608_000970 PF13677 Membrane MotB of proton-channel complex MotA/MotB IXO608_000970 PF00691 OmpA family IXO608_000975 PF01618 MotA/TolQ/ExbB proton channel family IXO608_000985 PF00593 TonB dependent receptor IXO608_000985 PF07715 TonB-dependent Receptor Plug Domain IXO608_000995 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IXO608_000995 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IXO608_001005 PF00593 TonB dependent receptor IXO608_001005 PF07715 TonB-dependent Receptor Plug Domain IXO608_001035 PF05598 Transposase domain (DUF772) IXO608_001035 PF01609 Transposase DDE domain IXO608_001080 PF04717 Type VI secretion system, phage-baseplate injector IXO608_001085 PF03377 TAL effector repeat IXO608_001100 PF04717 Type VI secretion system, phage-baseplate injector IXO608_001120 PF06715 Gp5 C-terminal repeat (3 copies) IXO608_001120 PF04717 Type VI secretion system, phage-baseplate injector IXO608_001175 PF01609 Transposase DDE domain IXO608_001175 PF05598 Transposase domain (DUF772) IXO608_001190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IXO608_001195 PF00294 pfkB family carbohydrate kinase IXO608_001200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IXO608_001200 PF00381 PTS HPr component phosphorylation site IXO608_001200 PF02896 PEP-utilising enzyme, TIM barrel domain IXO608_001200 PF00391 PEP-utilising enzyme, mobile domain IXO608_001200 PF05524 PEP-utilising enzyme, N-terminal IXO608_001205 PF00356 Bacterial regulatory proteins, lacI family IXO608_001225 PF00873 AcrB/AcrD/AcrF family IXO608_001230 PF00529 HlyD membrane-fusion protein of T1SS IXO608_001230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IXO608_001240 PF05088 Bacterial NAD-glutamate dehydrogenase IXO608_001245 PF05598 Transposase domain (DUF772) IXO608_001245 PF01609 Transposase DDE domain IXO608_001250 PF00072 Response regulator receiver domain IXO608_001255 PF00672 HAMP domain IXO608_001255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_001255 PF00512 His Kinase A (phospho-acceptor) domain IXO608_001255 PF01627 Hpt domain IXO608_001255 PF00072 Response regulator receiver domain IXO608_001255 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IXO608_001260 PF04286 Protein of unknown function (DUF445) IXO608_001270 PF00005 ABC transporter IXO608_001275 PF00202 Aminotransferase class-III IXO608_001285 PF07690 Major Facilitator Superfamily IXO608_001290 PF02634 FdhD/NarQ family IXO608_001295 PF00384 Molybdopterin oxidoreductase IXO608_001305 PF07690 Major Facilitator Superfamily IXO608_001305 PF00083 Sugar (and other) transporter IXO608_001310 PF00990 Diguanylate cyclase, GGDEF domain IXO608_001310 PF00072 Response regulator receiver domain IXO608_001315 PF01266 FAD dependent oxidoreductase IXO608_001320 PF00120 Glutamine synthetase, catalytic domain IXO608_001330 PF00120 Glutamine synthetase, catalytic domain IXO608_001340 PF13533 Biotin-lipoyl like IXO608_001345 PF07690 Major Facilitator Superfamily IXO608_001350 PF02321 Outer membrane efflux protein IXO608_001355 PF00005 ABC transporter IXO608_001355 PF08402 TOBE domain IXO608_001365 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_001375 PF00171 Aldehyde dehydrogenase family IXO608_001390 PF00571 CBS domain IXO608_001390 PF03471 Transporter associated domain IXO608_001400 PF02130 Uncharacterized protein family UPF0054 IXO608_001410 PF02562 PhoH-like protein IXO608_001415 PF00919 Uncharacterized protein family UPF0004 IXO608_001415 PF01938 TRAM domain IXO608_001415 PF04055 Radical SAM superfamily IXO608_001435 PF01464 Transglycosylase SLT domain IXO608_001440 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IXO608_001440 PF00355 Rieske [2Fe-2S] domain IXO608_001445 PF00033 Cytochrome b/b6/petB IXO608_001445 PF00032 Cytochrome b(C-terminal)/b6/petD IXO608_001450 PF02167 Cytochrome C1 family IXO608_001455 PF02798 Glutathione S-transferase, N-terminal domain IXO608_001455 PF00043 Glutathione S-transferase, C-terminal domain IXO608_001460 PF04386 Stringent starvation protein B IXO608_001495 PF00872 Transposase, Mutator family IXO608_001510 PF01619 Proline dehydrogenase IXO608_001510 PF00171 Aldehyde dehydrogenase family IXO608_001510 PF14850 DNA-binding domain of Proline dehydrogenase IXO608_001510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IXO608_001560 PF01612 3'-5' exonuclease IXO608_001560 PF00570 HRDC domain IXO608_001570 PF03781 Sulfatase-modifying factor enzyme 1 IXO608_001585 PF02601 Exonuclease VII, large subunit IXO608_001585 PF13742 OB-fold nucleic acid binding domain IXO608_001590 PF08331 Domain of unknown function (DUF1730) IXO608_001595 PF01256 Carbohydrate kinase IXO608_001595 PF03853 YjeF-related protein N-terminus IXO608_001600 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IXO608_001605 PF01520 N-acetylmuramoyl-L-alanine amidase IXO608_001605 PF11741 AMIN domain IXO608_001610 PF01119 DNA mismatch repair protein, C-terminal domain IXO608_001610 PF08676 MutL C terminal dimerisation domain IXO608_001625 PF05233 PHB accumulation regulatory domain IXO608_001625 PF07879 PHB/PHA accumulation regulator DNA-binding domain IXO608_001630 PF00106 short chain dehydrogenase IXO608_001635 PF00749 tRNA synthetases class I (E and Q), catalytic domain IXO608_001640 PF01435 Peptidase family M48 IXO608_001645 PF00072 Response regulator receiver domain IXO608_001645 PF00990 Diguanylate cyclase, GGDEF domain IXO608_001645 PF00563 EAL domain IXO608_001655 PF07152 YaeQ protein IXO608_001660 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IXO608_001665 PF00313 'Cold-shock' DNA-binding domain IXO608_001670 PF02798 Glutathione S-transferase, N-terminal domain IXO608_001670 PF14497 Glutathione S-transferase, C-terminal domain IXO608_001680 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IXO608_001685 PF00156 Phosphoribosyl transferase domain IXO608_001690 PF00271 Helicase conserved C-terminal domain IXO608_001690 PF00270 DEAD/DEAH box helicase IXO608_001690 PF03880 DbpA RNA binding domain IXO608_001695 PF12848 ABC transporter IXO608_001695 PF00005 ABC transporter IXO608_001695 PF16326 ABC transporter C-terminal domain IXO608_001710 PF00545 ribonuclease IXO608_001715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IXO608_001715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IXO608_001720 PF00459 Inositol monophosphatase family IXO608_001725 PF00588 SpoU rRNA Methylase family IXO608_001735 PF13188 PAS domain IXO608_001735 PF03707 Bacterial signalling protein N terminal repeat IXO608_001735 PF00990 Diguanylate cyclase, GGDEF domain IXO608_001735 PF00563 EAL domain IXO608_001740 PF04055 Radical SAM superfamily IXO608_001745 PF09285 Elongation factor P, C-terminal IXO608_001745 PF08207 Elongation factor P (EF-P) KOW-like domain IXO608_001745 PF01132 Elongation factor P (EF-P) OB domain IXO608_001755 PF01979 Amidohydrolase family IXO608_001765 PF13419 Haloacid dehalogenase-like hydrolase IXO608_001775 PF00295 Glycosyl hydrolases family 28 IXO608_001785 PF01095 Pectinesterase IXO608_001795 PF05598 Transposase domain (DUF772) IXO608_001795 PF01609 Transposase DDE domain IXO608_001825 PF01551 Peptidase family M23 IXO608_001825 PF08460 Bacterial SH3 domain IXO608_001830 PF01979 Amidohydrolase family IXO608_001835 PF01809 Putative membrane protein insertion efficiency factor IXO608_001840 PF01258 Prokaryotic dksA/traR C4-type zinc finger IXO608_001855 PF02657 Fe-S metabolism associated domain IXO608_001860 PF09190 DALR domain IXO608_001860 PF01406 tRNA synthetases class I (C) catalytic domain IXO608_001870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IXO608_001870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IXO608_001875 PF00764 Arginosuccinate synthase IXO608_001885 PF07687 Peptidase dimerisation domain IXO608_001885 PF01546 Peptidase family M20/M25/M40 IXO608_001890 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase IXO608_001890 PF00696 Amino acid kinase family IXO608_001900 PF01118 Semialdehyde dehydrogenase, NAD binding domain IXO608_001905 PF00206 Lyase IXO608_001920 PF00696 Amino acid kinase family IXO608_001920 PF01472 PUA domain IXO608_001925 PF00171 Aldehyde dehydrogenase family IXO608_001930 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IXO608_001930 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain IXO608_001960 PF01654 Cytochrome bd terminal oxidase subunit I IXO608_001980 PF00664 ABC transporter transmembrane region IXO608_001980 PF00005 ABC transporter IXO608_001985 PF00005 ABC transporter IXO608_001985 PF00664 ABC transporter transmembrane region IXO608_002030 PF00034 Cytochrome c IXO608_002050 PF00873 AcrB/AcrD/AcrF family IXO608_002070 PF01609 Transposase DDE domain IXO608_002070 PF05598 Transposase domain (DUF772) IXO608_002080 PF01609 Transposase DDE domain IXO608_002080 PF05598 Transposase domain (DUF772) IXO608_002125 PF01584 CheW-like domain IXO608_002125 PF02895 Signal transducing histidine kinase, homodimeric domain IXO608_002125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_002125 PF01627 Hpt domain IXO608_002125 PF00072 Response regulator receiver domain IXO608_002130 PF04344 Chemotaxis phosphatase, CheZ IXO608_002135 PF00072 Response regulator receiver domain IXO608_002140 PF04545 Sigma-70, region 4 IXO608_002140 PF04542 Sigma-70 region 2 IXO608_002140 PF04539 Sigma-70 region 3 IXO608_002145 PF10609 NUBPL iron-transfer P-loop NTPase IXO608_002150 PF00448 SRP54-type protein, GTPase domain IXO608_002155 PF00771 FHIPEP family IXO608_002160 PF01312 FlhB HrpN YscU SpaS Family IXO608_002165 PF03707 Bacterial signalling protein N terminal repeat IXO608_002165 PF00990 Diguanylate cyclase, GGDEF domain IXO608_002165 PF00563 EAL domain IXO608_002170 PF00990 Diguanylate cyclase, GGDEF domain IXO608_002175 PF00990 Diguanylate cyclase, GGDEF domain IXO608_002180 PF01311 Bacterial export proteins, family 1 IXO608_002185 PF01313 Bacterial export proteins, family 3 IXO608_002190 PF00813 FliP family IXO608_002195 PF04347 Flagellar biosynthesis protein, FliO IXO608_002200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IXO608_002205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IXO608_002205 PF02154 Flagellar motor switch protein FliM IXO608_002225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IXO608_002225 PF18269 T3SS EscN ATPase C-terminal domain IXO608_002235 PF01706 FliG C-terminal domain IXO608_002235 PF14841 FliG middle domain IXO608_002235 PF14842 FliG N-terminal domain IXO608_002240 PF01514 Secretory protein of YscJ/FliF family IXO608_002240 PF08345 Flagellar M-ring protein C-terminal IXO608_002245 PF02049 Flagellar hook-basal body complex protein FliE IXO608_002250 PF00534 Glycosyl transferases group 1 IXO608_002250 PF00535 Glycosyl transferase family 2 IXO608_002285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IXO608_002285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IXO608_002295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IXO608_002300 PF06490 Flagellar regulatory protein FleQ IXO608_002300 PF00158 Sigma-54 interaction domain IXO608_002300 PF02954 Bacterial regulatory protein, Fis family IXO608_002305 PF01339 CheB methylesterase IXO608_002305 PF00072 Response regulator receiver domain IXO608_002310 PF04963 Sigma-54 factor, core binding domain IXO608_002310 PF04552 Sigma-54, DNA binding domain IXO608_002310 PF00309 Sigma-54 factor, Activator interacting domain (AID) IXO608_002315 PF00196 Bacterial regulatory proteins, luxR family IXO608_002315 PF00072 Response regulator receiver domain IXO608_002330 PF02561 Flagellar protein FliS IXO608_002335 PF07196 Flagellin hook IN motif IXO608_002335 PF07195 Flagellar hook-associated protein 2 C-terminus IXO608_002335 PF02465 Flagellar hook-associated protein 2 N-terminus IXO608_002340 PF00700 Bacterial flagellin C-terminal helical region IXO608_002340 PF00669 Bacterial flagellin N-terminal helical region IXO608_002350 PF07196 Flagellin hook IN motif IXO608_002350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IXO608_002355 PF10135 Rod binding protein IXO608_002355 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IXO608_002360 PF02119 Flagellar P-ring protein IXO608_002365 PF02107 Flagellar L-ring protein IXO608_002370 PF00460 Flagella basal body rod protein IXO608_002370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IXO608_002375 PF00460 Flagella basal body rod protein IXO608_002375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IXO608_002380 PF07559 Flagellar basal body protein FlaE IXO608_002380 PF00460 Flagella basal body rod protein IXO608_002380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IXO608_002385 PF03963 Flagellar hook capping protein - N-terminal region IXO608_002390 PF00460 Flagella basal body rod protein IXO608_002390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IXO608_002400 PF01584 CheW-like domain IXO608_002400 PF00072 Response regulator receiver domain IXO608_002420 PF13426 PAS domain IXO608_002420 PF13188 PAS domain IXO608_002420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_002420 PF00989 PAS fold IXO608_002420 PF00512 His Kinase A (phospho-acceptor) domain IXO608_002425 PF03707 Bacterial signalling protein N terminal repeat IXO608_002425 PF00563 EAL domain IXO608_002425 PF00990 Diguanylate cyclase, GGDEF domain IXO608_002430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_002430 PF07730 Histidine kinase IXO608_002435 PF00563 EAL domain IXO608_002435 PF00990 Diguanylate cyclase, GGDEF domain IXO608_002435 PF08447 PAS fold IXO608_002435 PF08448 PAS fold IXO608_002450 PF12729 Four helix bundle sensory module for signal transduction IXO608_002450 PF00672 HAMP domain IXO608_002450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_002455 PF04356 Protein of unknown function (DUF489) IXO608_002465 PF00293 NUDIX domain IXO608_002470 PF02617 ATP-dependent Clp protease adaptor protein ClpS IXO608_002475 PF10431 C-terminal, D2-small domain, of ClpB protein IXO608_002475 PF17871 AAA lid domain IXO608_002475 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_002475 PF02861 Clp amino terminal domain, pathogenicity island component IXO608_002475 PF07724 AAA domain (Cdc48 subfamily) IXO608_002480 PF01176 Translation initiation factor 1A / IF-1 IXO608_002485 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IXO608_002500 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_002505 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IXO608_002505 PF17854 FtsK alpha domain IXO608_002505 PF09397 Ftsk gamma domain IXO608_002505 PF01580 FtsK/SpoIIIE family IXO608_002515 PF03548 Outer membrane lipoprotein carrier protein LolA IXO608_002525 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_002525 PF16193 AAA C-terminal domain IXO608_002525 PF12002 MgsA AAA+ ATPase C terminal IXO608_002535 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IXO608_002545 PF00654 Voltage gated chloride channel IXO608_002550 PF00108 Thiolase, N-terminal domain IXO608_002550 PF02803 Thiolase, C-terminal domain IXO608_002555 PF00378 Enoyl-CoA hydratase/isomerase IXO608_002555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IXO608_002555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IXO608_002565 PF00334 Nucleoside diphosphate kinase IXO608_002570 PF04055 Radical SAM superfamily IXO608_002580 PF13464 Domain of unknown function (DUF4115) IXO608_002590 PF13360 PQQ-like domain IXO608_002590 PF01011 PQQ enzyme repeat IXO608_002595 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IXO608_002595 PF01926 50S ribosome-binding GTPase IXO608_002600 PF00994 Probable molybdopterin binding domain IXO608_002600 PF03454 MoeA C-terminal region (domain IV) IXO608_002600 PF03453 MoeA N-terminal region (domain I and II) IXO608_002630 PF05598 Transposase domain (DUF772) IXO608_002630 PF01609 Transposase DDE domain IXO608_002640 PF05598 Transposase domain (DUF772) IXO608_002640 PF01609 Transposase DDE domain IXO608_002655 PF05598 Transposase domain (DUF772) IXO608_002670 PF00899 ThiF family IXO608_002685 PF00183 Hsp90 protein IXO608_002685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_002695 PF01467 Cytidylyltransferase-like IXO608_002705 PF00037 4Fe-4S binding domain IXO608_002785 PF02547 Queuosine biosynthesis protein IXO608_002790 PF01702 Queuine tRNA-ribosyltransferase IXO608_002795 PF02699 Preprotein translocase subunit IXO608_002800 PF07549 SecD/SecF GG Motif IXO608_002800 PF13721 SecD export protein N-terminal TM region IXO608_002800 PF02355 Protein export membrane protein IXO608_002805 PF07549 SecD/SecF GG Motif IXO608_002805 PF02355 Protein export membrane protein IXO608_002810 PF00589 Phage integrase family IXO608_002810 PF13495 Phage integrase, N-terminal SAM-like domain IXO608_002835 PF00872 Transposase, Mutator family IXO608_002850 PF00929 Exonuclease IXO608_002860 PF01895 PhoU domain IXO608_002865 PF00005 ABC transporter IXO608_002870 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_002875 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_002880 PF12849 PBP superfamily domain IXO608_002885 PF12849 PBP superfamily domain IXO608_002920 PF01609 Transposase DDE domain IXO608_002920 PF05598 Transposase domain (DUF772) IXO608_002925 PF00484 Carbonic anhydrase IXO608_002935 PF00633 Helix-hairpin-helix motif IXO608_002935 PF10576 Iron-sulfur binding domain of endonuclease III IXO608_002935 PF00730 HhH-GPD superfamily base excision DNA repair protein IXO608_002945 PF00378 Enoyl-CoA hydratase/isomerase IXO608_002950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IXO608_002950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IXO608_002955 PF00293 NUDIX domain IXO608_002960 PF00581 Rhodanese-like domain IXO608_003000 PF10672 S-adenosylmethionine-dependent methyltransferase IXO608_003000 PF02926 THUMP domain IXO608_003000 PF01170 Putative RNA methylase family UPF0020 IXO608_003010 PF01513 ATP-NAD kinase IXO608_003025 PF00248 Aldo/keto reductase family IXO608_003035 PF08411 Exonuclease C-terminal IXO608_003035 PF00929 Exonuclease IXO608_003040 PF01494 FAD binding domain IXO608_003045 PF00266 Aminotransferase class-V IXO608_003055 PF06052 3-hydroxyanthranilic acid dioxygenase IXO608_003060 PF00484 Carbonic anhydrase IXO608_003085 PF00152 tRNA synthetases class II (D, K and N) IXO608_003085 PF01336 OB-fold nucleic acid binding domain IXO608_003090 PF01521 Iron-sulphur cluster biosynthesis IXO608_003095 PF01250 Ribosomal protein S6 IXO608_003100 PF01084 Ribosomal protein S18 IXO608_003105 PF03948 Ribosomal protein L9, C-terminal domain IXO608_003105 PF01281 Ribosomal protein L9, N-terminal domain IXO608_003110 PF02463 RecF/RecN/SMC N terminal domain IXO608_003115 PF04354 ZipA, C-terminal FtsZ-binding domain IXO608_003125 PF12826 Helix-hairpin-helix motif IXO608_003125 PF00533 BRCA1 C Terminus (BRCT) domain IXO608_003125 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IXO608_003125 PF03120 NAD-dependent DNA ligase OB-fold domain IXO608_003125 PF01653 NAD-dependent DNA ligase adenylation domain IXO608_003130 PF00152 tRNA synthetases class II (D, K and N) IXO608_003145 PF01008 Initiation factor 2 subunit family IXO608_003150 PF03989 DNA gyrase C-terminal domain, beta-propeller IXO608_003150 PF00521 DNA gyrase/topoisomerase IV, subunit A IXO608_003170 PF01175 Urocanase Rossmann-like domain IXO608_003170 PF17392 Urocanase C-terminal domain IXO608_003170 PF17391 Urocanase N-terminal domain IXO608_003180 PF00221 Aromatic amino acid lyase IXO608_003185 PF07969 Amidohydrolase family IXO608_003195 PF00392 Bacterial regulatory proteins, gntR family IXO608_003195 PF07702 UTRA domain IXO608_003220 PF01794 Ferric reductase like transmembrane component IXO608_003225 PF00174 Oxidoreductase molybdopterin binding domain IXO608_003230 PF00266 Aminotransferase class-V IXO608_003235 PF01842 ACT domain IXO608_003235 PF01817 Chorismate mutase type II IXO608_003235 PF00800 Prephenate dehydratase IXO608_003240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IXO608_003265 PF12951 Passenger-associated-transport-repeat IXO608_003270 PF00072 Response regulator receiver domain IXO608_003270 PF00196 Bacterial regulatory proteins, luxR family IXO608_003275 PF13426 PAS domain IXO608_003275 PF08448 PAS fold IXO608_003275 PF00072 Response regulator receiver domain IXO608_003275 PF00512 His Kinase A (phospho-acceptor) domain IXO608_003275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_003280 PF02321 Outer membrane efflux protein IXO608_003285 PF00873 AcrB/AcrD/AcrF family IXO608_003290 PF13533 Biotin-lipoyl like IXO608_003300 PF05598 Transposase domain (DUF772) IXO608_003315 PF01520 N-acetylmuramoyl-L-alanine amidase IXO608_003320 PF02649 Type I GTP cyclohydrolase folE2 IXO608_003330 PF12627 Probable RNA and SrmB- binding site of polymerase A IXO608_003330 PF01743 Poly A polymerase head domain IXO608_003330 PF12626 Polymerase A arginine-rich C-terminus IXO608_003335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IXO608_003340 PF02548 Ketopantoate hydroxymethyltransferase IXO608_003345 PF02569 Pantoate-beta-alanine ligase IXO608_003350 PF02261 Aspartate decarboxylase IXO608_003355 PF00342 Phosphoglucose isomerase IXO608_003375 PF01915 Glycosyl hydrolase family 3 C-terminal domain IXO608_003375 PF00933 Glycosyl hydrolase family 3 N terminal domain IXO608_003375 PF14310 Fibronectin type III-like domain IXO608_003380 PF00474 Sodium:solute symporter family IXO608_003390 PF00563 EAL domain IXO608_003390 PF01590 GAF domain IXO608_003390 PF00990 Diguanylate cyclase, GGDEF domain IXO608_003390 PF00360 Phytochrome region IXO608_003405 PF00933 Glycosyl hydrolase family 3 N terminal domain IXO608_003405 PF01915 Glycosyl hydrolase family 3 C-terminal domain IXO608_003405 PF14310 Fibronectin type III-like domain IXO608_003440 PF12802 MarR family IXO608_003450 PF04542 Sigma-70 region 2 IXO608_003450 PF08281 Sigma-70, region 4 IXO608_003475 PF00255 Glutathione peroxidase IXO608_003480 PF00970 Oxidoreductase FAD-binding domain IXO608_003480 PF00175 Oxidoreductase NAD-binding domain IXO608_003485 PF00005 ABC transporter IXO608_003490 PF05681 Fumarate hydratase (Fumerase) IXO608_003490 PF05683 Fumarase C-terminus IXO608_003510 PF02253 Phospholipase A1 IXO608_003530 PF00990 Diguanylate cyclase, GGDEF domain IXO608_003555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IXO608_003555 PF00072 Response regulator receiver domain IXO608_003555 PF01627 Hpt domain IXO608_003555 PF00512 His Kinase A (phospho-acceptor) domain IXO608_003555 PF00672 HAMP domain IXO608_003555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_003585 PF01081 KDPG and KHG aldolase IXO608_003590 PF00920 Dehydratase family IXO608_003595 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IXO608_003600 PF02685 Glucokinase IXO608_003605 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IXO608_003605 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IXO608_003610 PF17912 MalK OB fold domain IXO608_003610 PF00005 ABC transporter IXO608_003620 PF01571 Aminomethyltransferase folate-binding domain IXO608_003630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IXO608_003635 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IXO608_003640 PF00890 FAD binding domain IXO608_003640 PF02910 Fumarate reductase flavoprotein C-term IXO608_003650 PF13085 2Fe-2S iron-sulfur cluster binding domain IXO608_003655 PF03937 Flavinator of succinate dehydrogenase IXO608_003665 PF12704 MacB-like periplasmic core domain IXO608_003665 PF02687 FtsX-like permease family IXO608_003670 PF00005 ABC transporter IXO608_003685 PF00753 Metallo-beta-lactamase superfamily IXO608_003685 PF03772 Competence protein IXO608_003690 PF01618 MotA/TolQ/ExbB proton channel family IXO608_003700 PF00005 ABC transporter IXO608_003700 PF00664 ABC transporter transmembrane region IXO608_003705 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IXO608_003710 PF02348 Cytidylyltransferase IXO608_003715 PF01451 Low molecular weight phosphotyrosine protein phosphatase IXO608_003725 PF08459 UvrC Helix-hairpin-helix N-terminal IXO608_003725 PF02151 UvrB/uvrC motif IXO608_003725 PF01541 GIY-YIG catalytic domain IXO608_003730 PF01066 CDP-alcohol phosphatidyltransferase IXO608_003750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IXO608_003760 PF00872 Transposase, Mutator family IXO608_003780 PF05598 Transposase domain (DUF772) IXO608_003780 PF01609 Transposase DDE domain IXO608_003795 PF13333 Integrase core domain IXO608_003795 PF00665 Integrase core domain IXO608_003795 PF13276 HTH-like domain IXO608_003900 PF02810 SEC-C motif IXO608_003900 PF01043 SecA preprotein cross-linking domain IXO608_003900 PF07516 SecA Wing and Scaffold domain IXO608_003900 PF07517 SecA DEAD-like domain IXO608_003915 PF03377 TAL effector repeat IXO608_003930 PF03377 TAL effector repeat IXO608_003940 PF01502 Phosphoribosyl-AMP cyclohydrolase IXO608_003940 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IXO608_003945 PF00977 Histidine biosynthesis protein IXO608_003950 PF00977 Histidine biosynthesis protein IXO608_003955 PF00117 Glutamine amidotransferase class-I IXO608_003960 PF00475 Imidazoleglycerol-phosphate dehydratase IXO608_003965 PF00155 Aminotransferase class I and II IXO608_003970 PF00815 Histidinol dehydrogenase IXO608_003975 PF01634 ATP phosphoribosyltransferase IXO608_003975 PF08029 HisG, C-terminal domain IXO608_003995 PF13393 Histidyl-tRNA synthetase IXO608_003995 PF03129 Anticodon binding domain IXO608_004010 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_004010 PF14821 Threonine synthase N terminus IXO608_004025 PF00288 GHMP kinases N terminal domain IXO608_004025 PF08544 GHMP kinases C terminal IXO608_004030 PF03447 Homoserine dehydrogenase, NAD binding domain IXO608_004030 PF00742 Homoserine dehydrogenase IXO608_004030 PF13840 ACT domain IXO608_004030 PF00696 Amino acid kinase family IXO608_004030 PF01842 ACT domain IXO608_004045 PF00171 Aldehyde dehydrogenase family IXO608_004060 PF01180 Dihydroorotate dehydrogenase IXO608_004065 PF01565 FAD binding domain IXO608_004065 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IXO608_004070 PF00892 EamA-like transporter family IXO608_004075 PF01177 Asp/Glu/Hydantoin racemase IXO608_004080 PF07690 Major Facilitator Superfamily IXO608_004090 PF01569 PAP2 superfamily IXO608_004095 PF04551 GcpE protein IXO608_004105 PF00072 Response regulator receiver domain IXO608_004120 PF17674 HHH domain IXO608_004120 PF00575 S1 RNA binding domain IXO608_004120 PF09371 Tex-like protein N-terminal domain IXO608_004120 PF16921 Tex protein YqgF-like domain IXO608_004130 PF01266 FAD dependent oxidoreductase IXO608_004130 PF00355 Rieske [2Fe-2S] domain IXO608_004145 PF00561 alpha/beta hydrolase fold IXO608_004155 PF01066 CDP-alcohol phosphatidyltransferase IXO608_004175 PF03618 Kinase/pyrophosphorylase IXO608_004180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IXO608_004180 PF02896 PEP-utilising enzyme, TIM barrel domain IXO608_004180 PF00391 PEP-utilising enzyme, mobile domain IXO608_004185 PF00924 Mechanosensitive ion channel IXO608_004185 PF05552 Conserved TM helix IXO608_004190 PF00929 Exonuclease IXO608_004195 PF14437 MafB19-like deaminase IXO608_004200 PF02742 Iron dependent repressor, metal binding and dimerisation domain IXO608_004200 PF01325 Iron dependent repressor, N-terminal DNA binding domain IXO608_004205 PF01566 Natural resistance-associated macrophage protein IXO608_004210 PF00072 Response regulator receiver domain IXO608_004210 PF00196 Bacterial regulatory proteins, luxR family IXO608_004225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_004225 PF03466 LysR substrate binding domain IXO608_004230 PF03601 Conserved hypothetical protein 698 IXO608_004255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_004255 PF03466 LysR substrate binding domain IXO608_004260 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus IXO608_004260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IXO608_004260 PF00361 Proton-conducting membrane transporter IXO608_004265 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) IXO608_004270 PF00958 GMP synthase C terminal domain IXO608_004270 PF00117 Glutamine amidotransferase class-I IXO608_004270 PF02540 NAD synthase IXO608_004275 PF00478 IMP dehydrogenase / GMP reductase domain IXO608_004275 PF00571 CBS domain IXO608_004280 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IXO608_004280 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IXO608_004300 PF00483 Nucleotidyl transferase IXO608_004305 PF02719 Polysaccharide biosynthesis protein IXO608_004310 PF00953 Glycosyl transferase family 4 IXO608_004315 PF18073 Rubredoxin metal binding domain IXO608_004325 PF00216 Bacterial DNA-binding protein IXO608_004330 PF00575 S1 RNA binding domain IXO608_004335 PF02224 Cytidylate kinase IXO608_004340 PF00444 Ribosomal protein L36 IXO608_004350 PF04371 Porphyromonas-type peptidyl-arginine deiminase IXO608_004360 PF00795 Carbon-nitrogen hydrolase IXO608_004385 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_004390 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_004410 PF00356 Bacterial regulatory proteins, lacI family IXO608_004420 PF03795 YCII-related domain IXO608_004425 PF02616 Segregation and condensation protein ScpA IXO608_004430 PF04079 Segregation and condensation complex subunit ScpB IXO608_004435 PF00849 RNA pseudouridylate synthase IXO608_004435 PF01479 S4 domain IXO608_004455 PF00795 Carbon-nitrogen hydrolase IXO608_004460 PF00155 Aminotransferase class I and II IXO608_004465 PF00005 ABC transporter IXO608_004470 PF03379 CcmB protein IXO608_004475 PF01578 Cytochrome C assembly protein IXO608_004485 PF03100 CcmE IXO608_004490 PF01578 Cytochrome C assembly protein IXO608_004490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IXO608_004495 PF08534 Redoxin IXO608_004500 PF03918 Cytochrome C biogenesis protein IXO608_004525 PF01565 FAD binding domain IXO608_004525 PF02913 FAD linked oxidases, C-terminal domain IXO608_004530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IXO608_004530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IXO608_004540 PF13520 Amino acid permease IXO608_004545 PF13520 Amino acid permease IXO608_004550 PF00596 Class II Aldolase and Adducin N-terminal domain IXO608_004555 PF03079 ARD/ARD' family IXO608_004585 PF03377 TAL effector repeat IXO608_004600 PF03377 TAL effector repeat IXO608_004630 PF03466 LysR substrate binding domain IXO608_004630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_004635 PF02525 Flavodoxin-like fold IXO608_004640 PF01609 Transposase DDE domain IXO608_004640 PF05598 Transposase domain (DUF772) IXO608_004660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IXO608_004660 PF02403 Seryl-tRNA synthetase N-terminal domain IXO608_004665 PF03544 Gram-negative bacterial TonB protein C-terminal IXO608_004690 PF01609 Transposase DDE domain IXO608_004690 PF05598 Transposase domain (DUF772) IXO608_004740 PF01609 Transposase DDE domain IXO608_004740 PF05598 Transposase domain (DUF772) IXO608_004750 PF00561 alpha/beta hydrolase fold IXO608_004755 PF00313 'Cold-shock' DNA-binding domain IXO608_004765 PF00872 Transposase, Mutator family IXO608_004785 PF05598 Transposase domain (DUF772) IXO608_004785 PF01609 Transposase DDE domain IXO608_004795 PF00588 SpoU rRNA Methylase family IXO608_004795 PF08032 RNA 2'-O ribose methyltransferase substrate binding IXO608_004815 PF17876 Cold shock domain IXO608_004815 PF08461 Ribonuclease R winged-helix domain IXO608_004815 PF08206 Ribonuclease B OB domain IXO608_004815 PF00773 RNB domain IXO608_004815 PF00575 S1 RNA binding domain IXO608_004840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IXO608_004840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IXO608_004840 PF02770 Acyl-CoA dehydrogenase, middle domain IXO608_004845 PF01209 ubiE/COQ5 methyltransferase family IXO608_004850 PF00809 Pterin binding enzyme IXO608_004850 PF02574 Homocysteine S-methyltransferase IXO608_004855 PF02574 Homocysteine S-methyltransferase IXO608_004855 PF00809 Pterin binding enzyme IXO608_004855 PF02965 Vitamin B12 dependent methionine synthase, activation domain IXO608_004855 PF02607 B12 binding domain IXO608_004855 PF02310 B12 binding domain IXO608_004865 PF00294 pfkB family carbohydrate kinase IXO608_004870 PF07690 Major Facilitator Superfamily IXO608_004875 PF00356 Bacterial regulatory proteins, lacI family IXO608_004890 PF04102 SlyX IXO608_004895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IXO608_004895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IXO608_004895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IXO608_004900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IXO608_004900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IXO608_004905 PF00255 Glutathione peroxidase IXO608_004915 PF00392 Bacterial regulatory proteins, gntR family IXO608_004920 PF00005 ABC transporter IXO608_004950 PF00206 Lyase IXO608_004950 PF10415 Fumarase C C-terminus IXO608_004980 PF08328 Adenylosuccinate lyase C-terminal IXO608_004980 PF00206 Lyase IXO608_005000 PF08007 Cupin superfamily protein IXO608_005010 PF02779 Transketolase, pyrimidine binding domain IXO608_005010 PF16870 2-oxoglutarate dehydrogenase C-terminal IXO608_005010 PF00676 Dehydrogenase E1 component IXO608_005010 PF16078 2-oxoglutarate dehydrogenase N-terminus IXO608_005015 PF00364 Biotin-requiring enzyme IXO608_005015 PF02817 e3 binding domain IXO608_005015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IXO608_005020 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_005020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IXO608_005025 PF03641 Possible lysine decarboxylase IXO608_005030 PF01205 Uncharacterized protein family UPF0029 IXO608_005035 PF00664 ABC transporter transmembrane region IXO608_005035 PF00005 ABC transporter IXO608_005050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_005050 PF03466 LysR substrate binding domain IXO608_005065 PF02153 Prephenate dehydrogenase IXO608_005065 PF01817 Chorismate mutase type II IXO608_005070 PF08543 Phosphomethylpyrimidine kinase IXO608_005075 PF00226 DnaJ domain IXO608_005075 PF01556 DnaJ C terminal domain IXO608_005075 PF00684 DnaJ central domain IXO608_005080 PF00012 Hsp70 protein IXO608_005085 PF01025 GrpE IXO608_005090 PF01628 HrcA protein C terminal domain IXO608_005090 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding IXO608_005095 PF02463 RecF/RecN/SMC N terminal domain IXO608_005100 PF01475 Ferric uptake regulator family IXO608_005105 PF04355 SmpA / OmlA family IXO608_005110 PF03658 RnfH family Ubiquitin IXO608_005115 PF03364 Polyketide cyclase / dehydrase and lipid transport IXO608_005120 PF01668 SmpB protein IXO608_005135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IXO608_005135 PF12806 Acetyl-CoA dehydrogenase C-terminal like IXO608_005135 PF02770 Acyl-CoA dehydrogenase, middle domain IXO608_005135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IXO608_005145 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IXO608_005145 PF02779 Transketolase, pyrimidine binding domain IXO608_005145 PF02780 Transketolase, C-terminal domain IXO608_005190 PF07690 Major Facilitator Superfamily IXO608_005195 PF00529 HlyD membrane-fusion protein of T1SS IXO608_005195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IXO608_005200 PF02321 Outer membrane efflux protein IXO608_005215 PF03989 DNA gyrase C-terminal domain, beta-propeller IXO608_005215 PF00521 DNA gyrase/topoisomerase IV, subunit A IXO608_005220 PF00210 Ferritin-like domain IXO608_005225 PF01804 Penicillin amidase IXO608_005230 PF00593 TonB dependent receptor IXO608_005230 PF07715 TonB-dependent Receptor Plug Domain IXO608_005240 PF00733 Asparagine synthase IXO608_005240 PF13537 Glutamine amidotransferase domain IXO608_005245 PF01546 Peptidase family M20/M25/M40 IXO608_005245 PF07687 Peptidase dimerisation domain IXO608_005255 PF03960 ArsC family IXO608_005265 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IXO608_005265 PF00132 Bacterial transferase hexapeptide (six repeats) IXO608_005265 PF14602 Hexapeptide repeat of succinyl-transferase IXO608_005270 PF01966 HD domain IXO608_005270 PF08335 GlnD PII-uridylyltransferase IXO608_005270 PF01909 Nucleotidyltransferase domain IXO608_005275 PF00557 Metallopeptidase family M24 IXO608_005310 PF00318 Ribosomal protein S2 IXO608_005315 PF00889 Elongation factor TS IXO608_005325 PF00696 Amino acid kinase family IXO608_005330 PF01765 Ribosome recycling factor IXO608_005335 PF01255 Putative undecaprenyl diphosphate synthase IXO608_005345 PF13288 DXP reductoisomerase C-terminal domain IXO608_005345 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IXO608_005345 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IXO608_005350 PF02163 Peptidase family M50 IXO608_005350 PF17820 PDZ domain IXO608_005355 PF01103 Surface antigen IXO608_005355 PF07244 Surface antigen variable number repeat IXO608_005360 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IXO608_005360 PF00132 Bacterial transferase hexapeptide (six repeats) IXO608_005365 PF07977 FabA-like domain IXO608_005370 PF00132 Bacterial transferase hexapeptide (six repeats) IXO608_005370 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IXO608_005375 PF02684 Lipid-A-disaccharide synthetase IXO608_005380 PF01351 Ribonuclease HII IXO608_005385 PF07733 Bacterial DNA polymerase III alpha NTPase domain IXO608_005385 PF01336 OB-fold nucleic acid binding domain IXO608_005385 PF02811 PHP domain IXO608_005385 PF14579 Helix-hairpin-helix motif IXO608_005385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IXO608_005390 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IXO608_005400 PF00593 TonB dependent receptor IXO608_005400 PF07715 TonB-dependent Receptor Plug Domain IXO608_005405 PF00005 ABC transporter IXO608_005405 PF13732 Domain of unknown function (DUF4162) IXO608_005430 PF03653 Uncharacterised protein family (UPF0093) IXO608_005475 PF00009 Elongation factor Tu GTP binding domain IXO608_005495 PF05598 Transposase domain (DUF772) IXO608_005510 PF02592 Putative vitamin uptake transporter IXO608_005525 PF02574 Homocysteine S-methyltransferase IXO608_005530 PF00324 Amino acid permease IXO608_005550 PF09334 tRNA synthetases class I (M) IXO608_005550 PF01588 Putative tRNA binding domain IXO608_005560 PF04060 Putative Fe-S cluster IXO608_005575 PF04542 Sigma-70 region 2 IXO608_005575 PF04545 Sigma-70, region 4 IXO608_005620 PF01042 Endoribonuclease L-PSP IXO608_005630 PF09924 Uncharacterised conserved protein (DUF2156) IXO608_005630 PF03706 Lysylphosphatidylglycerol synthase TM region IXO608_005675 PF07690 Major Facilitator Superfamily IXO608_005680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IXO608_005690 PF03831 PhnA domain IXO608_005690 PF08274 PhnA Zinc-Ribbon IXO608_005705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IXO608_005740 PF01258 Prokaryotic dksA/traR C4-type zinc finger IXO608_005750 PF07043 Protein of unknown function (DUF1328) IXO608_005755 PF01863 Protein of unknown function DUF45 IXO608_005770 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IXO608_005770 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IXO608_005775 PF12951 Passenger-associated-transport-repeat IXO608_005775 PF03797 Autotransporter beta-domain IXO608_005775 PF00082 Subtilase family IXO608_005780 PF00108 Thiolase, N-terminal domain IXO608_005780 PF02803 Thiolase, C-terminal domain IXO608_005795 PF00072 Response regulator receiver domain IXO608_005795 PF00990 Diguanylate cyclase, GGDEF domain IXO608_005810 PF04675 DNA ligase N terminus IXO608_005810 PF01068 ATP dependent DNA ligase domain IXO608_005810 PF04679 ATP dependent DNA ligase C terminal region IXO608_005820 PF04675 DNA ligase N terminus IXO608_005820 PF04679 ATP dependent DNA ligase C terminal region IXO608_005820 PF01068 ATP dependent DNA ligase domain IXO608_005825 PF00270 DEAD/DEAH box helicase IXO608_005825 PF08494 DEAD/H associated IXO608_005825 PF00271 Helicase conserved C-terminal domain IXO608_005845 PF00313 'Cold-shock' DNA-binding domain IXO608_005850 PF01048 Phosphorylase superfamily IXO608_005855 PF00156 Phosphoribosyl transferase domain IXO608_005860 PF00933 Glycosyl hydrolase family 3 N terminal domain IXO608_005865 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IXO608_005870 PF01593 Flavin containing amine oxidoreductase IXO608_005875 PF01323 DSBA-like thioredoxin domain IXO608_005880 PF05598 Transposase domain (DUF772) IXO608_005890 PF01928 CYTH domain IXO608_005895 PF05958 tRNA (Uracil-5-)-methyltransferase IXO608_005905 PF02565 Recombination protein O C terminal IXO608_005905 PF11967 Recombination protein O N terminal IXO608_005910 PF07650 KH domain IXO608_005910 PF01926 50S ribosome-binding GTPase IXO608_005915 PF14622 Ribonuclease-III-like IXO608_005915 PF00035 Double-stranded RNA binding motif IXO608_005925 PF10502 Signal peptidase, peptidase S26 IXO608_005930 PF00679 Elongation factor G C-terminus IXO608_005930 PF00009 Elongation factor Tu GTP binding domain IXO608_005930 PF03144 Elongation factor Tu domain 2 IXO608_005930 PF06421 GTP-binding protein LepA C-terminus IXO608_005935 PF13180 PDZ domain IXO608_005945 PF08281 Sigma-70, region 4 IXO608_005945 PF04542 Sigma-70 region 2 IXO608_005950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IXO608_005950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IXO608_005950 PF00378 Enoyl-CoA hydratase/isomerase IXO608_005955 PF01545 Cation efflux family IXO608_005960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IXO608_005960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IXO608_005965 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IXO608_005965 PF00378 Enoyl-CoA hydratase/isomerase IXO608_005965 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IXO608_005970 PF00378 Enoyl-CoA hydratase/isomerase IXO608_005975 PF02770 Acyl-CoA dehydrogenase, middle domain IXO608_005975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IXO608_005975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IXO608_005980 PF00171 Aldehyde dehydrogenase family IXO608_005985 PF01381 Helix-turn-helix IXO608_005985 PF06114 IrrE N-terminal-like domain IXO608_005985 PF09856 Predicted transcriptional regulator (DUF2083) IXO608_005995 PF07745 Glycosyl hydrolase family 53 IXO608_006030 PF01627 Hpt domain IXO608_006030 PF00072 Response regulator receiver domain IXO608_006030 PF00512 His Kinase A (phospho-acceptor) domain IXO608_006030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_006030 PF00672 HAMP domain IXO608_006030 PF17149 Periplasmic sensor domain found in signal transduction proteins IXO608_006035 PF17149 Periplasmic sensor domain found in signal transduction proteins IXO608_006035 PF00672 HAMP domain IXO608_006035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_006035 PF00512 His Kinase A (phospho-acceptor) domain IXO608_006035 PF01627 Hpt domain IXO608_006035 PF00072 Response regulator receiver domain IXO608_006040 PF00672 HAMP domain IXO608_006040 PF17149 Periplasmic sensor domain found in signal transduction proteins IXO608_006040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_006040 PF00072 Response regulator receiver domain IXO608_006040 PF01627 Hpt domain IXO608_006040 PF00512 His Kinase A (phospho-acceptor) domain IXO608_006045 PF04264 YceI-like domain IXO608_006055 PF04264 YceI-like domain IXO608_006070 PF03313 Serine dehydratase alpha chain IXO608_006070 PF03315 Serine dehydratase beta chain IXO608_006080 PF01053 Cys/Met metabolism PLP-dependent enzyme IXO608_006085 PF00561 alpha/beta hydrolase fold IXO608_006090 PF01551 Peptidase family M23 IXO608_006090 PF08525 Opacity-associated protein A N-terminal motif IXO608_006090 PF01476 LysM domain IXO608_006095 PF00009 Elongation factor Tu GTP binding domain IXO608_006095 PF16658 Class II release factor RF3, C-terminal domain IXO608_006100 PF03006 Haemolysin-III related IXO608_006120 PF00535 Glycosyl transferase family 2 IXO608_006125 PF00912 Transglycosylase IXO608_006130 PF01430 Hsp33 protein IXO608_006140 PF07715 TonB-dependent Receptor Plug Domain IXO608_006140 PF00593 TonB dependent receptor IXO608_006145 PF00440 Bacterial regulatory proteins, tetR family IXO608_006155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IXO608_006155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IXO608_006155 PF09317 Domain of unknown function (DUF1974) IXO608_006190 PF01597 Glycine cleavage H-protein IXO608_006195 PF01571 Aminomethyltransferase folate-binding domain IXO608_006195 PF08669 Glycine cleavage T-protein C-terminal barrel domain IXO608_006205 PF16200 C-terminal region of band_7 IXO608_006205 PF01145 SPFH domain / Band 7 family IXO608_006220 PF03819 MazG nucleotide pyrophosphohydrolase domain IXO608_006225 PF00459 Inositol monophosphatase family IXO608_006230 PF00293 NUDIX domain IXO608_006235 PF00202 Aminotransferase class-III IXO608_006240 PF04452 RNA methyltransferase IXO608_006245 PF02685 Glucokinase IXO608_006260 PF00704 Glycosyl hydrolases family 18 IXO608_006260 PF01476 LysM domain IXO608_006270 PF02838 Glycosyl hydrolase family 20, domain 2 IXO608_006270 PF00728 Glycosyl hydrolase family 20, catalytic domain IXO608_006270 PF07691 PA14 domain IXO608_006280 PF14310 Fibronectin type III-like domain IXO608_006280 PF00933 Glycosyl hydrolase family 3 N terminal domain IXO608_006280 PF07691 PA14 domain IXO608_006280 PF01915 Glycosyl hydrolase family 3 C-terminal domain IXO608_006285 PF00664 ABC transporter transmembrane region IXO608_006285 PF00005 ABC transporter IXO608_006285 PF03412 Peptidase C39 family IXO608_006350 PF07971 Glycosyl hydrolase family 92 IXO608_006350 PF17678 Glycosyl hydrolase family 92 N-terminal domain IXO608_006360 PF01301 Glycosyl hydrolases family 35 IXO608_006400 PF03932 CutC family IXO608_006405 PF01112 Asparaginase IXO608_006425 PF13302 Acetyltransferase (GNAT) domain IXO608_006440 PF00072 Response regulator receiver domain IXO608_006440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_006440 PF02895 Signal transducing histidine kinase, homodimeric domain IXO608_006440 PF01584 CheW-like domain IXO608_006440 PF01627 Hpt domain IXO608_006445 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IXO608_006445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_006450 PF01584 CheW-like domain IXO608_006455 PF00072 Response regulator receiver domain IXO608_006460 PF00072 Response regulator receiver domain IXO608_006465 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IXO608_006465 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IXO608_006475 PF03747 ADP-ribosylglycohydrolase IXO608_006480 PF00814 Glycoprotease family IXO608_006485 PF13307 Helicase C-terminal domain IXO608_006485 PF04851 Type III restriction enzyme, res subunit IXO608_006495 PF14814 Bifunctional transglycosylase second domain IXO608_006495 PF00912 Transglycosylase IXO608_006495 PF00905 Penicillin binding protein transpeptidase domain IXO608_006500 PF00535 Glycosyl transferase family 2 IXO608_006510 PF13291 ACT domain IXO608_006510 PF04607 Region found in RelA / SpoT proteins IXO608_006510 PF02824 TGS domain IXO608_006515 PF08042 PqqA family IXO608_006520 PF12706 Beta-lactamase superfamily domain IXO608_006525 PF03070 TENA/THI-4/PQQC family IXO608_006530 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IXO608_006535 PF04055 Radical SAM superfamily IXO608_006535 PF13186 Iron-sulfur cluster-binding domain IXO608_006565 PF11898 Domain of unknown function (DUF3418) IXO608_006565 PF04408 Helicase associated domain (HA2) IXO608_006565 PF00271 Helicase conserved C-terminal domain IXO608_006565 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IXO608_006565 PF00270 DEAD/DEAH box helicase IXO608_006570 PF00210 Ferritin-like domain IXO608_006575 PF00270 DEAD/DEAH box helicase IXO608_006575 PF00271 Helicase conserved C-terminal domain IXO608_006575 PF00570 HRDC domain IXO608_006575 PF09382 RQC domain IXO608_006575 PF16124 RecQ zinc-binding IXO608_006595 PF06508 Queuosine biosynthesis protein QueC IXO608_006605 PF05598 Transposase domain (DUF772) IXO608_006630 PF01810 LysE type translocator IXO608_006645 PF01479 S4 domain IXO608_006645 PF00849 RNA pseudouridylate synthase IXO608_006650 PF04055 Radical SAM superfamily IXO608_006660 PF00691 OmpA family IXO608_006665 PF07676 WD40-like Beta Propeller Repeat IXO608_006665 PF04052 TolB amino-terminal domain IXO608_006675 PF02472 Biopolymer transport protein ExbD/TolR IXO608_006680 PF01618 MotA/TolQ/ExbB proton channel family IXO608_006685 PF03061 Thioesterase superfamily IXO608_006690 PF17864 RuvB AAA lid domain IXO608_006690 PF05491 RuvB C-terminal winged helix domain IXO608_006690 PF05496 Holliday junction DNA helicase RuvB P-loop domain IXO608_006695 PF02705 K+ potassium transporter IXO608_006700 PF01330 RuvA N terminal domain IXO608_006700 PF07499 RuvA, C-terminal domain IXO608_006705 PF02075 Crossover junction endodeoxyribonuclease RuvC IXO608_006710 PF01709 Transcriptional regulator IXO608_006725 PF01336 OB-fold nucleic acid binding domain IXO608_006725 PF00152 tRNA synthetases class II (D, K and N) IXO608_006725 PF02938 GAD domain IXO608_006760 PF18073 Rubredoxin metal binding domain IXO608_006775 PF00488 MutS domain V IXO608_006775 PF05190 MutS family domain IV IXO608_006775 PF05192 MutS domain III IXO608_006775 PF01624 MutS domain I IXO608_006775 PF05188 MutS domain II IXO608_006805 PF14220 Domain of unknown function (DUF4329) IXO608_006805 PF03527 RHS protein IXO608_006805 PF05593 RHS Repeat IXO608_006805 PF14220 Domain of unknown function (DUF4329) IXO608_006805 PF03527 RHS protein IXO608_006805 PF05593 RHS Repeat IXO608_006815 PF04717 Type VI secretion system, phage-baseplate injector IXO608_006815 PF06715 Gp5 C-terminal repeat (3 copies) IXO608_006825 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IXO608_006830 PF00510 Cytochrome c oxidase subunit III IXO608_006835 PF00115 Cytochrome C and Quinol oxidase polypeptide I IXO608_006840 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IXO608_006840 PF06481 COX Aromatic Rich Motif IXO608_006850 PF02401 LytB protein IXO608_006855 PF01252 Signal peptidase (SPase) II IXO608_006860 PF06827 Zinc finger found in FPG and IleRS IXO608_006860 PF08264 Anticodon-binding domain of tRNA IXO608_006860 PF00133 tRNA synthetases class I (I, L, M and V) IXO608_006865 PF06574 FAD synthetase IXO608_006865 PF01687 Riboflavin kinase IXO608_006870 PF03023 Lipid II flippase MurJ IXO608_006875 PF01649 Ribosomal protein S20 IXO608_006880 PF01926 50S ribosome-binding GTPase IXO608_006880 PF01018 GTP1/OBG IXO608_006885 PF01016 Ribosomal L27 protein IXO608_006890 PF00829 Ribosomal prokaryotic L21 protein IXO608_006895 PF17760 UvrA interaction domain IXO608_006895 PF00005 ABC transporter IXO608_006895 PF17755 UvrA DNA-binding domain IXO608_006910 PF00378 Enoyl-CoA hydratase/isomerase IXO608_006925 PF08281 Sigma-70, region 4 IXO608_006925 PF04542 Sigma-70 region 2 IXO608_006940 PF04377 Arginine-tRNA-protein transferase, C terminus IXO608_006940 PF04376 Arginine-tRNA-protein transferase, N terminus IXO608_006970 PF07715 TonB-dependent Receptor Plug Domain IXO608_006970 PF00593 TonB dependent receptor IXO608_006980 PF02358 Trehalose-phosphatase IXO608_006985 PF00723 Glycosyl hydrolases family 15 IXO608_006990 PF00982 Glycosyltransferase family 20 IXO608_007005 PF02578 Multi-copper polyphenol oxidoreductase laccase IXO608_007010 PF00849 RNA pseudouridylate synthase IXO608_007015 PF13525 Outer membrane lipoprotein IXO608_007020 PF02540 NAD synthase IXO608_007020 PF00795 Carbon-nitrogen hydrolase IXO608_007030 PF02629 CoA binding domain IXO608_007030 PF00549 CoA-ligase IXO608_007035 PF00549 CoA-ligase IXO608_007035 PF08442 ATP-grasp domain IXO608_007040 PF00512 His Kinase A (phospho-acceptor) domain IXO608_007040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_007045 PF00158 Sigma-54 interaction domain IXO608_007045 PF00072 Response regulator receiver domain IXO608_007045 PF02954 Bacterial regulatory protein, Fis family IXO608_007060 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IXO608_007060 PF00437 Type II/IV secretion system protein IXO608_007075 PF00884 Sulfatase IXO608_007075 PF08019 Phosphoethanolamine transferase EptA/EptB IXO608_007080 PF07963 Prokaryotic N-terminal methylation motif IXO608_007080 PF00114 Pilin (bacterial filament) IXO608_007085 PF00482 Type II secretion system (T2SS), protein F IXO608_007090 PF06750 Bacterial Peptidase A24 N-terminal domain IXO608_007090 PF01478 Type IV leader peptidase family IXO608_007095 PF01121 Dephospho-CoA kinase IXO608_007125 PF01609 Transposase DDE domain IXO608_007125 PF05598 Transposase domain (DUF772) IXO608_007150 PF01609 Transposase DDE domain IXO608_007150 PF05598 Transposase domain (DUF772) IXO608_007180 PF00664 ABC transporter transmembrane region IXO608_007180 PF00005 ABC transporter IXO608_007190 PF00873 AcrB/AcrD/AcrF family IXO608_007205 PF02321 Outer membrane efflux protein IXO608_007210 PF00486 Transcriptional regulatory protein, C terminal IXO608_007210 PF00072 Response regulator receiver domain IXO608_007215 PF00672 HAMP domain IXO608_007215 PF00512 His Kinase A (phospho-acceptor) domain IXO608_007215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_007220 PF00999 Sodium/hydrogen exchanger family IXO608_007225 PF00144 Beta-lactamase IXO608_007230 PF03737 Aldolase/RraA IXO608_007250 PF00849 RNA pseudouridylate synthase IXO608_007250 PF01479 S4 domain IXO608_007255 PF08448 PAS fold IXO608_007255 PF00563 EAL domain IXO608_007255 PF00990 Diguanylate cyclase, GGDEF domain IXO608_007260 PF00270 DEAD/DEAH box helicase IXO608_007260 PF03880 DbpA RNA binding domain IXO608_007260 PF00271 Helicase conserved C-terminal domain IXO608_007305 PF12833 Helix-turn-helix domain IXO608_007305 PF06029 AlkA N-terminal domain IXO608_007305 PF00730 HhH-GPD superfamily base excision DNA repair protein IXO608_007305 PF02805 Metal binding domain of Ada IXO608_007310 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IXO608_007310 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IXO608_007315 PF01609 Transposase DDE domain IXO608_007315 PF05598 Transposase domain (DUF772) IXO608_007325 PF00654 Voltage gated chloride channel IXO608_007330 PF08240 Alcohol dehydrogenase GroES-like domain IXO608_007330 PF00107 Zinc-binding dehydrogenase IXO608_007365 PF00691 OmpA family IXO608_007365 PF05736 OprF membrane domain IXO608_007375 PF00875 DNA photolyase IXO608_007375 PF03441 FAD binding domain of DNA photolyase IXO608_007380 PF03796 DnaB-like helicase C terminal domain IXO608_007380 PF00772 DnaB-like helicase N terminal domain IXO608_007385 PF03358 NADPH-dependent FMN reductase IXO608_007390 PF00733 Asparagine synthase IXO608_007390 PF13537 Glutamine amidotransferase domain IXO608_007395 PF13417 Glutathione S-transferase, N-terminal domain IXO608_007405 PF02770 Acyl-CoA dehydrogenase, middle domain IXO608_007405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IXO608_007405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IXO608_007420 PF01026 TatD related DNase IXO608_007425 PF00899 ThiF family IXO608_007440 PF00313 'Cold-shock' DNA-binding domain IXO608_007485 PF01475 Ferric uptake regulator family IXO608_007490 PF00749 tRNA synthetases class I (E and Q), catalytic domain IXO608_007520 PF05598 Transposase domain (DUF772) IXO608_007520 PF01609 Transposase DDE domain IXO608_007580 PF00672 HAMP domain IXO608_007580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_007580 PF00512 His Kinase A (phospho-acceptor) domain IXO608_007590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IXO608_007600 PF02559 CarD-like/TRCF domain IXO608_007600 PF00270 DEAD/DEAH box helicase IXO608_007600 PF00271 Helicase conserved C-terminal domain IXO608_007600 PF03461 TRCF domain IXO608_007600 PF17757 UvrB interaction domain IXO608_007615 PF01584 CheW-like domain IXO608_007615 PF01627 Hpt domain IXO608_007615 PF09078 CheY binding IXO608_007615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_007615 PF02895 Signal transducing histidine kinase, homodimeric domain IXO608_007620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IXO608_007620 PF02203 Tar ligand binding domain homologue IXO608_007620 PF00672 HAMP domain IXO608_007625 PF01584 CheW-like domain IXO608_007630 PF00563 EAL domain IXO608_007630 PF00990 Diguanylate cyclase, GGDEF domain IXO608_007630 PF13426 PAS domain IXO608_007635 PF01739 CheR methyltransferase, SAM binding domain IXO608_007635 PF03705 CheR methyltransferase, all-alpha domain IXO608_007640 PF01339 CheB methylesterase IXO608_007640 PF00072 Response regulator receiver domain IXO608_007650 PF05649 Peptidase family M13 IXO608_007650 PF01431 Peptidase family M13 IXO608_007665 PF00300 Histidine phosphatase superfamily (branch 1) IXO608_007670 PF04493 Endonuclease V IXO608_007680 PF02678 Pirin IXO608_007680 PF05726 Pirin C-terminal cupin domain IXO608_007740 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IXO608_007740 PF04717 Type VI secretion system, phage-baseplate injector IXO608_007740 PF13296 Putative type VI secretion system Rhs element Vgr IXO608_007770 PF04717 Type VI secretion system, phage-baseplate injector IXO608_007770 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IXO608_007770 PF13296 Putative type VI secretion system Rhs element Vgr IXO608_007780 PF01609 Transposase DDE domain IXO608_007780 PF05598 Transposase domain (DUF772) IXO608_007800 PF04717 Type VI secretion system, phage-baseplate injector IXO608_007800 PF06715 Gp5 C-terminal repeat (3 copies) IXO608_007810 PF02678 Pirin IXO608_007810 PF05726 Pirin C-terminal cupin domain IXO608_007815 PF02554 Carbon starvation protein CstA IXO608_007815 PF13722 5TM C-terminal transporter carbon starvation CstA IXO608_007820 PF04328 Selenoprotein, putative IXO608_007855 PF01590 GAF domain IXO608_007855 PF00990 Diguanylate cyclase, GGDEF domain IXO608_007855 PF00360 Phytochrome region IXO608_007855 PF00563 EAL domain IXO608_007860 PF00436 Single-strand binding protein family IXO608_007865 PF00348 Polyprenyl synthetase IXO608_007875 PF08245 Mur ligase middle domain IXO608_007890 PF00696 Amino acid kinase family IXO608_007890 PF01842 ACT domain IXO608_007900 PF02567 Phenazine biosynthesis-like protein IXO608_007910 PF02566 OsmC-like protein IXO608_007920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IXO608_007920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IXO608_007925 PF03652 Holliday junction resolvase IXO608_007930 PF02622 Uncharacterized ACR, COG1678 IXO608_007940 PF13673 Acetyltransferase (GNAT) domain IXO608_007940 PF13302 Acetyltransferase (GNAT) domain IXO608_007940 PF00958 GMP synthase C terminal domain IXO608_007940 PF00117 Glutamine amidotransferase class-I IXO608_007940 PF03352 Methyladenine glycosylase IXO608_007960 PF00437 Type II/IV secretion system protein IXO608_007965 PF00437 Type II/IV secretion system protein IXO608_007970 PF01168 Alanine racemase, N-terminal domain IXO608_007975 PF03807 NADP oxidoreductase coenzyme F420-dependent IXO608_007975 PF14748 Pyrroline-5-carboxylate reductase dimerisation IXO608_008010 PF01965 DJ-1/PfpI family IXO608_008030 PF02082 Transcriptional regulator IXO608_008035 PF01458 Uncharacterized protein family (UPF0051) IXO608_008040 PF00005 ABC transporter IXO608_008045 PF01458 Uncharacterized protein family (UPF0051) IXO608_008050 PF00266 Aminotransferase class-V IXO608_008060 PF00355 Rieske [2Fe-2S] domain IXO608_008100 PF00266 Aminotransferase class-V IXO608_008105 PF01053 Cys/Met metabolism PLP-dependent enzyme IXO608_008115 PF07722 Peptidase C26 IXO608_008120 PF01810 LysE type translocator IXO608_008125 PF04204 Homoserine O-succinyltransferase IXO608_008130 PF00120 Glutamine synthetase, catalytic domain IXO608_008135 PF00872 Transposase, Mutator family IXO608_008160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_008160 PF00183 Hsp90 protein IXO608_008165 PF12833 Helix-turn-helix domain IXO608_008195 PF07859 alpha/beta hydrolase fold IXO608_008195 PF13472 GDSL-like Lipase/Acylhydrolase family IXO608_008205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_008205 PF03466 LysR substrate binding domain IXO608_008220 PF00005 ABC transporter IXO608_008220 PF12848 ABC transporter IXO608_008225 PF07715 TonB-dependent Receptor Plug Domain IXO608_008225 PF00593 TonB dependent receptor IXO608_008240 PF00593 TonB dependent receptor IXO608_008240 PF07715 TonB-dependent Receptor Plug Domain IXO608_008245 PF00593 TonB dependent receptor IXO608_008245 PF07715 TonB-dependent Receptor Plug Domain IXO608_008255 PF02254 TrkA-N domain IXO608_008255 PF00999 Sodium/hydrogen exchanger family IXO608_008270 PF07660 Secretin and TonB N terminus short domain IXO608_008270 PF00593 TonB dependent receptor IXO608_008270 PF07715 TonB-dependent Receptor Plug Domain IXO608_008280 PF06276 Ferric iron reductase FhuF-like transporter IXO608_008280 PF04183 IucA / IucC family IXO608_008285 PF07690 Major Facilitator Superfamily IXO608_008290 PF06276 Ferric iron reductase FhuF-like transporter IXO608_008290 PF04183 IucA / IucC family IXO608_008295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IXO608_008295 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IXO608_008305 PF02654 Cobalamin-5-phosphate synthase IXO608_008315 PF02277 Phosphoribosyltransferase IXO608_008320 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IXO608_008330 PF12557 Cob(I)alamin adenosyltransferase N terminal IXO608_008330 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IXO608_008355 PF07715 TonB-dependent Receptor Plug Domain IXO608_008355 PF00593 TonB dependent receptor IXO608_008390 PF02861 Clp amino terminal domain, pathogenicity island component IXO608_008390 PF10431 C-terminal, D2-small domain, of ClpB protein IXO608_008390 PF07724 AAA domain (Cdc48 subfamily) IXO608_008390 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_008390 PF17871 AAA lid domain IXO608_008395 PF01541 GIY-YIG catalytic domain IXO608_008420 PF01479 S4 domain IXO608_008425 PF01554 MatE IXO608_008435 PF01245 Ribosomal protein L19 IXO608_008440 PF01746 tRNA (Guanine-1)-methyltransferase IXO608_008445 PF05239 PRC-barrel domain IXO608_008445 PF01782 RimM N-terminal domain IXO608_008450 PF00886 Ribosomal protein S16 IXO608_008460 PF03060 Nitronate monooxygenase IXO608_008470 PF02978 Signal peptide binding domain IXO608_008470 PF02881 SRP54-type protein, helical bundle domain IXO608_008470 PF00448 SRP54-type protein, GTPase domain IXO608_008480 PF01578 Cytochrome C assembly protein IXO608_008485 PF05598 Transposase domain (DUF772) IXO608_008485 PF01609 Transposase DDE domain IXO608_008490 PF01263 Aldose 1-epimerase IXO608_008495 PF06964 Alpha-L-arabinofuranosidase C-terminal domain IXO608_008535 PF07687 Peptidase dimerisation domain IXO608_008535 PF01546 Peptidase family M20/M25/M40 IXO608_008550 PF01636 Phosphotransferase enzyme family IXO608_008555 PF00483 Nucleotidyl transferase IXO608_008560 PF00308 Bacterial dnaA protein IXO608_008565 PF01594 AI-2E family transporter IXO608_008575 PF00586 AIR synthase related protein, N-terminal domain IXO608_008575 PF02769 AIR synthase related protein, C-terminal domain IXO608_008590 PF00551 Formyl transferase IXO608_008610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IXO608_008615 PF01722 BolA-like protein IXO608_008620 PF00571 CBS domain IXO608_008620 PF01380 SIS domain IXO608_008635 PF03968 OstA-like protein IXO608_008640 PF00005 ABC transporter IXO608_008645 PF04552 Sigma-54, DNA binding domain IXO608_008645 PF00309 Sigma-54 factor, Activator interacting domain (AID) IXO608_008645 PF04963 Sigma-54 factor, core binding domain IXO608_008650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IXO608_008655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IXO608_008660 PF07475 HPr Serine kinase C-terminal domain IXO608_008660 PF02603 HPr Serine kinase N terminus IXO608_008665 PF03668 P-loop ATPase protein family IXO608_008675 PF00381 PTS HPr component phosphorylation site IXO608_008680 PF05524 PEP-utilising enzyme, N-terminal IXO608_008680 PF00391 PEP-utilising enzyme, mobile domain IXO608_008680 PF02896 PEP-utilising enzyme, TIM barrel domain IXO608_008685 PF00571 CBS domain IXO608_008685 PF01769 Divalent cation transporter IXO608_008685 PF03448 MgtE intracellular N domain IXO608_008690 PF00756 Putative esterase IXO608_008695 PF02322 Cytochrome bd terminal oxidase subunit II IXO608_008700 PF01654 Cytochrome bd terminal oxidase subunit I IXO608_008715 PF00324 Amino acid permease IXO608_008725 PF00561 alpha/beta hydrolase fold IXO608_008730 PF00196 Bacterial regulatory proteins, luxR family IXO608_008735 PF00324 Amino acid permease IXO608_008750 PF12706 Beta-lactamase superfamily domain IXO608_008755 PF04820 Tryptophan halogenase IXO608_008780 PF00376 MerR family regulatory protein IXO608_008780 PF09278 MerR, DNA binding IXO608_008790 PF03738 Glutathionylspermidine synthase preATP-grasp IXO608_008815 PF04012 PspA/IM30 family IXO608_008825 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IXO608_008825 PF01243 Pyridoxamine 5'-phosphate oxidase IXO608_008830 PF01202 Shikimate kinase IXO608_008835 PF01761 3-dehydroquinate synthase IXO608_008845 PF01208 Uroporphyrinogen decarboxylase (URO-D) IXO608_008860 PF03377 TAL effector repeat IXO608_008875 PF03377 TAL effector repeat IXO608_008890 PF03377 TAL effector repeat IXO608_008905 PF03377 TAL effector repeat IXO608_008915 PF13276 HTH-like domain IXO608_008915 PF13333 Integrase core domain IXO608_008915 PF00665 Integrase core domain IXO608_008930 PF00202 Aminotransferase class-III IXO608_008940 PF00127 Copper binding proteins, plastocyanin/azurin family IXO608_008955 PF00034 Cytochrome c IXO608_008955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IXO608_008980 PF00202 Aminotransferase class-III IXO608_008985 PF00520 Ion transport protein IXO608_008985 PF00027 Cyclic nucleotide-binding domain IXO608_009015 PF18030 RimK PreATP-grasp domain IXO608_009015 PF08443 RimK-like ATP-grasp domain IXO608_009025 PF00486 Transcriptional regulatory protein, C terminal IXO608_009025 PF00072 Response regulator receiver domain IXO608_009030 PF00672 HAMP domain IXO608_009030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_009030 PF00512 His Kinase A (phospho-acceptor) domain IXO608_009050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IXO608_009050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IXO608_009080 PF04273 Putative phosphatase (DUF442) IXO608_009080 PF00753 Metallo-beta-lactamase superfamily IXO608_009090 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_009095 PF00005 ABC transporter IXO608_009095 PF03459 TOBE domain IXO608_009115 PF00512 His Kinase A (phospho-acceptor) domain IXO608_009115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_009115 PF08521 Two-component sensor kinase N-terminal IXO608_009120 PF00486 Transcriptional regulatory protein, C terminal IXO608_009120 PF00072 Response regulator receiver domain IXO608_009140 PF00501 AMP-binding enzyme IXO608_009165 PF01476 LysM domain IXO608_009165 PF03734 L,D-transpeptidase catalytic domain IXO608_009170 PF04225 Opacity-associated protein A LysM-like domain IXO608_009170 PF01551 Peptidase family M23 IXO608_009180 PF02779 Transketolase, pyrimidine binding domain IXO608_009180 PF02780 Transketolase, C-terminal domain IXO608_009180 PF00456 Transketolase, thiamine diphosphate binding domain IXO608_009185 PF00375 Sodium:dicarboxylate symporter family IXO608_009205 PF07584 Aerotolerance regulator N-terminal IXO608_009205 PF00092 von Willebrand factor type A domain IXO608_009225 PF07726 ATPase family associated with various cellular activities (AAA) IXO608_009225 PF17863 AAA lid domain IXO608_009250 PF07660 Secretin and TonB N terminus short domain IXO608_009250 PF00263 Bacterial type II and III secretion system protein IXO608_009250 PF11741 AMIN domain IXO608_009250 PF03958 Bacterial type II/III secretion system short domain IXO608_009255 PF04351 Pilus assembly protein, PilP IXO608_009260 PF04350 Pilus assembly protein, PilO IXO608_009265 PF05137 Fimbrial assembly protein (PilN) IXO608_009270 PF11104 Type IV pilus assembly protein PilM; IXO608_009275 PF17092 Penicillin-binding protein OB-like domain IXO608_009275 PF00912 Transglycosylase IXO608_009275 PF00905 Penicillin binding protein transpeptidase domain IXO608_009285 PF00285 Citrate synthase, C-terminal domain IXO608_009290 PF01197 Ribosomal protein L31 IXO608_009295 PF01156 Inosine-uridine preferring nucleoside hydrolase IXO608_009300 PF00270 DEAD/DEAH box helicase IXO608_009300 PF00271 Helicase conserved C-terminal domain IXO608_009300 PF17191 RecG wedge domain IXO608_009305 PF01042 Endoribonuclease L-PSP IXO608_009310 PF13291 ACT domain IXO608_009310 PF04607 Region found in RelA / SpoT proteins IXO608_009310 PF02824 TGS domain IXO608_009315 PF01192 RNA polymerase Rpb6 IXO608_009330 PF00625 Guanylate kinase IXO608_009335 PF03755 YicC-like family, N-terminal region IXO608_009335 PF08340 Domain of unknown function (DUF1732) IXO608_009340 PF01138 3' exoribonuclease family, domain 1 IXO608_009340 PF03725 3' exoribonuclease family, domain 2 IXO608_009350 PF01725 Ham1 family IXO608_009355 PF06969 HemN C-terminal domain IXO608_009355 PF04055 Radical SAM superfamily IXO608_009370 PF00557 Metallopeptidase family M24 IXO608_009395 PF00557 Metallopeptidase family M24 IXO608_009395 PF05195 Aminopeptidase P, N-terminal domain IXO608_009400 PF03695 Uncharacterised protein family (UPF0149) IXO608_009410 PF05164 Cell division protein ZapA IXO608_009420 PF01812 5-formyltetrahydrofolate cyclo-ligase family IXO608_009430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IXO608_009440 PF13369 Transglutaminase-like superfamily IXO608_009445 PF00301 Rubredoxin IXO608_009450 PF02581 Thiamine monophosphate synthase IXO608_009480 PF00390 Malic enzyme, N-terminal domain IXO608_009480 PF03949 Malic enzyme, NAD binding domain IXO608_009480 PF01515 Phosphate acetyl/butaryl transferase IXO608_009485 PF00375 Sodium:dicarboxylate symporter family IXO608_009500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_009500 PF00512 His Kinase A (phospho-acceptor) domain IXO608_009505 PF07690 Major Facilitator Superfamily IXO608_009515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_009515 PF03466 LysR substrate binding domain IXO608_009530 PF00196 Bacterial regulatory proteins, luxR family IXO608_009530 PF00072 Response regulator receiver domain IXO608_009540 PF08521 Two-component sensor kinase N-terminal IXO608_009540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_009540 PF00512 His Kinase A (phospho-acceptor) domain IXO608_009545 PF00072 Response regulator receiver domain IXO608_009545 PF00486 Transcriptional regulatory protein, C terminal IXO608_009555 PF03600 Citrate transporter IXO608_009560 PF00106 short chain dehydrogenase IXO608_009565 PF00356 Bacterial regulatory proteins, lacI family IXO608_009585 PF00128 Alpha amylase, catalytic domain IXO608_009600 PF03193 RsgA GTPase IXO608_009605 PF00155 Aminotransferase class I and II IXO608_009625 PF01522 Polysaccharide deacetylase IXO608_009630 PF00462 Glutaredoxin IXO608_009655 PF01609 Transposase DDE domain IXO608_009655 PF05598 Transposase domain (DUF772) IXO608_009700 PF01327 Polypeptide deformylase IXO608_009705 PF03960 ArsC family IXO608_009720 PF07726 ATPase family associated with various cellular activities (AAA) IXO608_009720 PF17863 AAA lid domain IXO608_009730 PF11992 Domain of unknown function (DUF3488) IXO608_009730 PF13559 Domain of unknown function (DUF4129) IXO608_009730 PF01841 Transglutaminase-like superfamily IXO608_009740 PF01230 HIT domain IXO608_009745 PF13662 Toprim domain IXO608_009745 PF02132 RecR protein IXO608_009750 PF02575 YbaB/EbfC DNA-binding family IXO608_009755 PF12169 DNA polymerase III subunits gamma and tau domain III IXO608_009755 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IXO608_009755 PF12170 DNA polymerase III tau subunit V interacting with alpha IXO608_009770 PF02391 MoaE protein IXO608_009775 PF02597 ThiS family IXO608_009780 PF01967 MoaC family IXO608_009790 PF04055 Radical SAM superfamily IXO608_009790 PF06463 Molybdenum Cofactor Synthesis C IXO608_009795 PF00753 Metallo-beta-lactamase superfamily IXO608_009795 PF12706 Beta-lactamase superfamily domain IXO608_009805 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IXO608_009815 PF00589 Phage integrase family IXO608_009815 PF13356 Arm DNA-binding domain IXO608_009875 PF13296 Putative type VI secretion system Rhs element Vgr IXO608_009875 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IXO608_009875 PF04717 Type VI secretion system, phage-baseplate injector IXO608_009910 PF00929 Exonuclease IXO608_009915 PF00075 RNase H IXO608_009925 PF16123 Hydroxyacylglutathione hydrolase C-terminus IXO608_009925 PF00753 Metallo-beta-lactamase superfamily IXO608_009930 PF05257 CHAP domain IXO608_009930 PF01476 LysM domain IXO608_009955 PF00216 Bacterial DNA-binding protein IXO608_009960 PF05362 Lon protease (S16) C-terminal proteolytic domain IXO608_009960 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_009960 PF02190 ATP-dependent protease La (LON) substrate-binding domain IXO608_009965 PF06689 ClpX C4-type zinc finger IXO608_009965 PF10431 C-terminal, D2-small domain, of ClpB protein IXO608_009965 PF07724 AAA domain (Cdc48 subfamily) IXO608_009970 PF00574 Clp protease IXO608_009975 PF05697 Bacterial trigger factor protein (TF) IXO608_009975 PF05698 Bacterial trigger factor protein (TF) C-terminus IXO608_010025 PF18324 Hypothetical protein TT1725 IXO608_010025 PF00180 Isocitrate/isopropylmalate dehydrogenase IXO608_010050 PF03009 Glycerophosphoryl diester phosphodiesterase family IXO608_010070 PF01609 Transposase DDE domain IXO608_010070 PF05598 Transposase domain (DUF772) IXO608_010190 PF02600 Disulfide bond formation protein DsbB IXO608_010200 PF01474 Class-II DAHP synthetase family IXO608_010220 PF00679 Elongation factor G C-terminus IXO608_010220 PF00009 Elongation factor Tu GTP binding domain IXO608_010220 PF03144 Elongation factor Tu domain 2 IXO608_010225 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IXO608_010230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IXO608_010230 PF00056 lactate/malate dehydrogenase, NAD binding domain IXO608_010235 PF00043 Glutathione S-transferase, C-terminal domain IXO608_010235 PF02798 Glutathione S-transferase, N-terminal domain IXO608_010250 PF01062 Bestrophin, RFP-TM, chloride channel IXO608_010260 PF01225 Mur ligase family, catalytic domain IXO608_010260 PF02875 Mur ligase family, glutamate ligase domain IXO608_010260 PF08245 Mur ligase middle domain IXO608_010270 PF00365 Phosphofructokinase IXO608_010290 PF03030 Inorganic H+ pyrophosphatase IXO608_010310 PF00719 Inorganic pyrophosphatase IXO608_010325 PF07715 TonB-dependent Receptor Plug Domain IXO608_010325 PF00593 TonB dependent receptor IXO608_010330 PF12833 Helix-turn-helix domain IXO608_010335 PF18500 CadC C-terminal domain 1 IXO608_010335 PF00486 Transcriptional regulatory protein, C terminal IXO608_010340 PF13667 ThiC-associated domain IXO608_010340 PF01964 Radical SAM ThiC family IXO608_010350 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IXO608_010350 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IXO608_010355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IXO608_010355 PF00205 Thiamine pyrophosphate enzyme, central domain IXO608_010355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IXO608_010365 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_010370 PF00682 HMGL-like IXO608_010370 PF08502 LeuA allosteric (dimerisation) domain IXO608_010375 PF00180 Isocitrate/isopropylmalate dehydrogenase IXO608_010385 PF00694 Aconitase C-terminal domain IXO608_010390 PF00330 Aconitase family (aconitate hydratase) IXO608_010395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_010420 PF02321 Outer membrane efflux protein IXO608_010425 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IXO608_010430 PF03279 Bacterial lipid A biosynthesis acyltransferase IXO608_010465 PF05598 Transposase domain (DUF772) IXO608_010475 PF01433 Peptidase family M1 domain IXO608_010475 PF11838 ERAP1-like C-terminal domain IXO608_010480 PF00709 Adenylosuccinate synthetase IXO608_010490 PF01145 SPFH domain / Band 7 family IXO608_010495 PF01145 SPFH domain / Band 7 family IXO608_010495 PF12221 Bacterial membrane protein N terminal IXO608_010500 PF00072 Response regulator receiver domain IXO608_010505 PF00226 DnaJ domain IXO608_010505 PF01556 DnaJ C terminal domain IXO608_010515 PF08534 Redoxin IXO608_010525 PF13936 Helix-turn-helix domain IXO608_010525 PF00665 Integrase core domain IXO608_010565 PF07715 TonB-dependent Receptor Plug Domain IXO608_010565 PF00593 TonB dependent receptor IXO608_010570 PF05598 Transposase domain (DUF772) IXO608_010570 PF01609 Transposase DDE domain IXO608_010575 PF04303 PrpF protein IXO608_010585 PF00330 Aconitase family (aconitate hydratase) IXO608_010585 PF00694 Aconitase C-terminal domain IXO608_010590 PF00285 Citrate synthase, C-terminal domain IXO608_010600 PF00158 Sigma-54 interaction domain IXO608_010600 PF02954 Bacterial regulatory protein, Fis family IXO608_010600 PF06506 Propionate catabolism activator IXO608_010630 PF09115 DNA polymerase III, delta subunit, C terminal IXO608_010635 PF02618 YceG-like family IXO608_010640 PF04715 Anthranilate synthase component I, N terminal region IXO608_010640 PF00425 chorismate binding enzyme IXO608_010645 PF00109 Beta-ketoacyl synthase, N-terminal domain IXO608_010645 PF02801 Beta-ketoacyl synthase, C-terminal domain IXO608_010650 PF00550 Phosphopantetheine attachment site IXO608_010660 PF00698 Acyl transferase domain IXO608_010670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IXO608_010670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IXO608_010675 PF01783 Ribosomal L32p protein family IXO608_010680 PF02620 Large ribosomal RNA subunit accumulation protein YceD IXO608_010685 PF02545 Maf-like protein IXO608_010700 PF09704 CRISPR-associated protein (Cas_Cas5) IXO608_010720 PF01867 CRISPR associated protein Cas1 IXO608_010725 PF09827 CRISPR associated protein Cas2 IXO608_010760 PF00593 TonB dependent receptor IXO608_010760 PF07715 TonB-dependent Receptor Plug Domain IXO608_010775 PF00392 Bacterial regulatory proteins, gntR family IXO608_010775 PF07702 UTRA domain IXO608_010790 PF00263 Bacterial type II and III secretion system protein IXO608_010790 PF03958 Bacterial type II/III secretion system short domain IXO608_010800 PF10741 Type II secretion system (T2SS), protein M subtype b IXO608_010805 PF05137 Fimbrial assembly protein (PilN) IXO608_010810 PF03934 Type II secretion system (T2SS), protein K IXO608_010820 PF07963 Prokaryotic N-terminal methylation motif IXO608_010825 PF12019 Type II transport protein GspH IXO608_010830 PF08334 Type II secretion system (T2SS), protein G IXO608_010835 PF00482 Type II secretion system (T2SS), protein F IXO608_010845 PF00437 Type II/IV secretion system protein IXO608_010845 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IXO608_010850 PF04151 Bacterial pre-peptidase C-terminal domain IXO608_010850 PF00082 Subtilase family IXO608_010875 PF05662 Coiled stalk of trimeric autotransporter adhesin IXO608_010875 PF05658 Head domain of trimeric autotransporter adhesin IXO608_010875 PF03895 YadA-like membrane anchor domain IXO608_010875 PF13018 Extended Signal Peptide of Type V secretion system IXO608_010885 PF10411 Disulfide bond isomerase protein N-terminus IXO608_010885 PF13098 Thioredoxin-like domain IXO608_010890 PF02899 Phage integrase, N-terminal SAM-like domain IXO608_010890 PF00589 Phage integrase family IXO608_010900 PF03739 Lipopolysaccharide export system permease LptF/LptG IXO608_010910 PF00883 Cytosol aminopeptidase family, catalytic domain IXO608_010910 PF02789 Cytosol aminopeptidase family, N-terminal domain IXO608_010925 PF08264 Anticodon-binding domain of tRNA IXO608_010925 PF00133 tRNA synthetases class I (I, L, M and V) IXO608_010925 PF10458 Valyl tRNA synthetase tRNA binding arm IXO608_010965 PF00544 Pectate lyase IXO608_010970 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IXO608_010970 PF01464 Transglycosylase SLT domain IXO608_010980 PF05598 Transposase domain (DUF772) IXO608_010980 PF01609 Transposase DDE domain IXO608_011005 PF01066 CDP-alcohol phosphatidyltransferase IXO608_011015 PF03129 Anticodon binding domain IXO608_011015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IXO608_011015 PF04073 Aminoacyl-tRNA editing domain IXO608_011020 PF00816 H-NS histone family IXO608_011030 PF02405 Permease MlaE IXO608_011035 PF00005 ABC transporter IXO608_011040 PF03886 ABC-type transport auxiliary lipoprotein component IXO608_011040 PF02470 MlaD protein IXO608_011060 PF05045 Rhamnan synthesis protein F IXO608_011060 PF14307 Glycosyltransferase WbsX IXO608_011065 PF01144 Coenzyme A transferase IXO608_011070 PF01144 Coenzyme A transferase IXO608_011075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IXO608_011075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IXO608_011075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IXO608_011075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IXO608_011080 PF00483 Nucleotidyl transferase IXO608_011080 PF01050 Mannose-6-phosphate isomerase IXO608_011085 PF04321 RmlD substrate binding domain IXO608_011090 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IXO608_011095 PF00483 Nucleotidyl transferase IXO608_011100 PF16363 GDP-mannose 4,6 dehydratase IXO608_011105 PF01012 Electron transfer flavoprotein domain IXO608_011110 PF01012 Electron transfer flavoprotein domain IXO608_011110 PF00766 Electron transfer flavoprotein FAD-binding domain IXO608_011120 PF00005 ABC transporter IXO608_011130 PF00872 Transposase, Mutator family IXO608_011160 PF01370 NAD dependent epimerase/dehydratase family IXO608_011170 PF01053 Cys/Met metabolism PLP-dependent enzyme IXO608_011175 PF00571 CBS domain IXO608_011175 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_011195 PF00437 Type II/IV secretion system protein IXO608_011200 PF13417 Glutathione S-transferase, N-terminal domain IXO608_011210 PF00271 Helicase conserved C-terminal domain IXO608_011210 PF00270 DEAD/DEAH box helicase IXO608_011215 PF01242 6-pyruvoyl tetrahydropterin synthase IXO608_011230 PF13185 GAF domain IXO608_011240 PF13419 Haloacid dehalogenase-like hydrolase IXO608_011245 PF11799 impB/mucB/samB family C-terminal domain IXO608_011245 PF00817 impB/mucB/samB family IXO608_011250 PF07977 FabA-like domain IXO608_011255 PF02801 Beta-ketoacyl synthase, C-terminal domain IXO608_011255 PF00109 Beta-ketoacyl synthase, N-terminal domain IXO608_011265 PF01432 Peptidase family M3 IXO608_011280 PF07732 Multicopper oxidase IXO608_011280 PF00394 Multicopper oxidase IXO608_011280 PF07731 Multicopper oxidase IXO608_011285 PF05275 Copper resistance protein B precursor (CopB) IXO608_011290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IXO608_011320 PF01380 SIS domain IXO608_011325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IXO608_011360 PF00132 Bacterial transferase hexapeptide (six repeats) IXO608_011360 PF14602 Hexapeptide repeat of succinyl-transferase IXO608_011360 PF12804 MobA-like NTP transferase domain IXO608_011370 PF01817 Chorismate mutase type II IXO608_011375 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IXO608_011380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IXO608_011380 PF02874 ATP synthase alpha/beta family, beta-barrel domain IXO608_011385 PF00231 ATP synthase IXO608_011390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IXO608_011390 PF00306 ATP synthase alpha/beta chain, C terminal domain IXO608_011390 PF02874 ATP synthase alpha/beta family, beta-barrel domain IXO608_011395 PF00213 ATP synthase delta (OSCP) subunit IXO608_011400 PF00430 ATP synthase B/B' CF(0) IXO608_011405 PF00137 ATP synthase subunit C IXO608_011410 PF00119 ATP synthase A chain IXO608_011430 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_011430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IXO608_011440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IXO608_011440 PF00364 Biotin-requiring enzyme IXO608_011440 PF02817 e3 binding domain IXO608_011465 PF03180 NLPA lipoprotein IXO608_011470 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_011475 PF09383 NIL domain IXO608_011475 PF00005 ABC transporter IXO608_011480 PF00892 EamA-like transporter family IXO608_011485 PF04461 Protein of unknown function (DUF520) IXO608_011515 PF13419 Haloacid dehalogenase-like hydrolase IXO608_011520 PF00849 RNA pseudouridylate synthase IXO608_011520 PF01479 S4 domain IXO608_011525 PF05175 Methyltransferase small domain IXO608_011525 PF08468 Methyltransferase small domain N-terminal IXO608_011540 PF07995 Glucose / Sorbosone dehydrogenase IXO608_011555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_011555 PF00512 His Kinase A (phospho-acceptor) domain IXO608_011555 PF00989 PAS fold IXO608_011575 PF01168 Alanine racemase, N-terminal domain IXO608_011575 PF00842 Alanine racemase, C-terminal domain IXO608_011580 PF01266 FAD dependent oxidoreductase IXO608_011585 PF01037 Lrp/AsnC ligand binding domain IXO608_011595 PF01641 SelR domain IXO608_011605 PF01618 MotA/TolQ/ExbB proton channel family IXO608_011610 PF13677 Membrane MotB of proton-channel complex MotA/MotB IXO608_011610 PF00691 OmpA family IXO608_011630 PF00072 Response regulator receiver domain IXO608_011630 PF00486 Transcriptional regulatory protein, C terminal IXO608_011635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_011635 PF00512 His Kinase A (phospho-acceptor) domain IXO608_011635 PF08448 PAS fold IXO608_011635 PF13188 PAS domain IXO608_011635 PF00072 Response regulator receiver domain IXO608_011645 PF04151 Bacterial pre-peptidase C-terminal domain IXO608_011645 PF00082 Subtilase family IXO608_011665 PF01061 ABC-2 type transporter IXO608_011670 PF00005 ABC transporter IXO608_011675 PF00999 Sodium/hydrogen exchanger family IXO608_011685 PF02469 Fasciclin domain IXO608_011695 PF03167 Uracil DNA glycosylase superfamily IXO608_011705 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IXO608_011715 PF03358 NADPH-dependent FMN reductase IXO608_011720 PF00248 Aldo/keto reductase family IXO608_011735 PF01431 Peptidase family M13 IXO608_011735 PF05649 Peptidase family M13 IXO608_011755 PF13520 Amino acid permease IXO608_011770 PF02743 Cache domain IXO608_011770 PF00672 HAMP domain IXO608_011770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_011770 PF06580 Histidine kinase IXO608_011795 PF02954 Bacterial regulatory protein, Fis family IXO608_011795 PF00072 Response regulator receiver domain IXO608_011795 PF00158 Sigma-54 interaction domain IXO608_011805 PF01654 Cytochrome bd terminal oxidase subunit I IXO608_011810 PF02322 Cytochrome bd terminal oxidase subunit II IXO608_011870 PF00593 TonB dependent receptor IXO608_011870 PF07715 TonB-dependent Receptor Plug Domain IXO608_011885 PF00005 ABC transporter IXO608_011955 PF04545 Sigma-70, region 4 IXO608_011955 PF04546 Sigma-70, non-essential region IXO608_011955 PF04542 Sigma-70 region 2 IXO608_011955 PF00140 Sigma-70 factor, region 1.2 IXO608_011955 PF03979 Sigma-70 factor, region 1.1 IXO608_011955 PF04539 Sigma-70 region 3 IXO608_011960 PF02580 D-Tyr-tRNA(Tyr) deacylase IXO608_011965 PF03279 Bacterial lipid A biosynthesis acyltransferase IXO608_011980 PF00925 GTP cyclohydrolase II IXO608_012000 PF00535 Glycosyl transferase family 2 IXO608_012015 PF01189 16S rRNA methyltransferase RsmB/F IXO608_012015 PF01029 NusB family IXO608_012020 PF02911 Formyl transferase, C-terminal domain IXO608_012020 PF00551 Formyl transferase IXO608_012025 PF01327 Polypeptide deformylase IXO608_012030 PF01476 LysM domain IXO608_012035 PF02481 DNA recombination-mediator protein A IXO608_012035 PF17782 DprA winged helix domain IXO608_012040 PF04361 Protein of unknown function (DUF494) IXO608_012055 PF01131 DNA topoisomerase IXO608_012055 PF13368 Topoisomerase C-terminal repeat IXO608_012055 PF01751 Toprim domain IXO608_012060 PF01300 Telomere recombination IXO608_012085 PF01343 Peptidase family S49 IXO608_012090 PF01554 MatE IXO608_012110 PF00270 DEAD/DEAH box helicase IXO608_012110 PF00271 Helicase conserved C-terminal domain IXO608_012110 PF17764 3′ DNA-binding domain (3′BD) IXO608_012110 PF18074 Primosomal protein N C-terminal domain IXO608_012110 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IXO608_012145 PF03091 CutA1 divalent ion tolerance protein IXO608_012150 PF11412 Disulphide bond corrector protein DsbC IXO608_012150 PF02683 Cytochrome C biogenesis protein transmembrane region IXO608_012155 PF01220 Dehydroquinase class II IXO608_012160 PF00364 Biotin-requiring enzyme IXO608_012170 PF02785 Biotin carboxylase C-terminal domain IXO608_012170 PF00289 Biotin carboxylase, N-terminal domain IXO608_012170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IXO608_012205 PF01381 Helix-turn-helix IXO608_012215 PF02954 Bacterial regulatory protein, Fis family IXO608_012235 PF12146 Serine aminopeptidase, S33 IXO608_012235 PF12147 Putative methyltransferase IXO608_012240 PF12146 Serine aminopeptidase, S33 IXO608_012240 PF12147 Putative methyltransferase IXO608_012250 PF01808 AICARFT/IMPCHase bienzyme IXO608_012250 PF02142 MGS-like domain IXO608_012255 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system IXO608_012265 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IXO608_012265 PF02843 Phosphoribosylglycinamide synthetase, C domain IXO608_012265 PF02844 Phosphoribosylglycinamide synthetase, N domain IXO608_012270 PF02687 FtsX-like permease family IXO608_012270 PF00005 ABC transporter IXO608_012270 PF12704 MacB-like periplasmic core domain IXO608_012280 PF12805 FUSC-like inner membrane protein yccS IXO608_012295 PF07690 Major Facilitator Superfamily IXO608_012310 PF03186 CobD/Cbib protein IXO608_012310 PF17113 Regulatory signalling modulator protein AmpE IXO608_012315 PF09297 NADH pyrophosphatase zinc ribbon domain IXO608_012315 PF00293 NUDIX domain IXO608_012315 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IXO608_012325 PF01521 Iron-sulphur cluster biosynthesis IXO608_012345 PF00072 Response regulator receiver domain IXO608_012345 PF00486 Transcriptional regulatory protein, C terminal IXO608_012350 PF00672 HAMP domain IXO608_012350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_012350 PF00512 His Kinase A (phospho-acceptor) domain IXO608_012350 PF01627 Hpt domain IXO608_012350 PF00072 Response regulator receiver domain IXO608_012350 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IXO608_012385 PF00579 tRNA synthetases class I (W and Y) IXO608_012390 PF04225 Opacity-associated protein A LysM-like domain IXO608_012390 PF01551 Peptidase family M23 IXO608_012395 PF03702 Anhydro-N-acetylmuramic acid kinase IXO608_012405 PF07690 Major Facilitator Superfamily IXO608_012410 PF03372 Endonuclease/Exonuclease/phosphatase family IXO608_012415 PF00156 Phosphoribosyl transferase domain IXO608_012425 PF13614 AAA domain IXO608_012430 PF17762 HTH domain found in ParB protein IXO608_012430 PF02195 ParB-like nuclease domain IXO608_012440 PF01370 NAD dependent epimerase/dehydratase family IXO608_012445 PF00535 Glycosyl transferase family 2 IXO608_012460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IXO608_012460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IXO608_012460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IXO608_012460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IXO608_012465 PF00692 dUTPase IXO608_012470 PF02441 Flavoprotein IXO608_012470 PF04127 DNA / pantothenate metabolism flavoprotein IXO608_012475 PF04002 RadC-like JAB domain IXO608_012480 PF03485 Arginyl tRNA synthetase N terminal domain IXO608_012480 PF05746 DALR anticodon binding domain IXO608_012480 PF00750 tRNA synthetases class I (R) IXO608_012495 PF00106 short chain dehydrogenase IXO608_012520 PF02627 Carboxymuconolactone decarboxylase family IXO608_012525 PF12146 Serine aminopeptidase, S33 IXO608_012530 PF10397 Adenylosuccinate lyase C-terminus IXO608_012530 PF00206 Lyase IXO608_012545 PF00775 Dioxygenase IXO608_012545 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IXO608_012550 PF00108 Thiolase, N-terminal domain IXO608_012550 PF02803 Thiolase, C-terminal domain IXO608_012580 PF00268 Ribonucleotide reductase, small chain IXO608_012585 PF03477 ATP cone domain IXO608_012585 PF02867 Ribonucleotide reductase, barrel domain IXO608_012585 PF00317 Ribonucleotide reductase, all-alpha domain IXO608_012595 PF13380 CoA binding domain IXO608_012595 PF13607 Succinyl-CoA ligase like flavodoxin domain IXO608_012595 PF00583 Acetyltransferase (GNAT) family IXO608_012610 PF00571 CBS domain IXO608_012610 PF01769 Divalent cation transporter IXO608_012610 PF03448 MgtE intracellular N domain IXO608_012615 PF00999 Sodium/hydrogen exchanger family IXO608_012615 PF02254 TrkA-N domain IXO608_012625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IXO608_012625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IXO608_012630 PF00723 Glycosyl hydrolases family 15 IXO608_012645 PF05166 YcgL domain IXO608_012650 PF02801 Beta-ketoacyl synthase, C-terminal domain IXO608_012650 PF00109 Beta-ketoacyl synthase, N-terminal domain IXO608_012660 PF00535 Glycosyl transferase family 2 IXO608_012685 PF00155 Aminotransferase class I and II IXO608_012690 PF06968 Biotin and Thiamin Synthesis associated domain IXO608_012690 PF04055 Radical SAM superfamily IXO608_012700 PF01040 UbiA prenyltransferase family IXO608_012710 PF01594 AI-2E family transporter IXO608_012720 PF00883 Cytosol aminopeptidase family, catalytic domain IXO608_012720 PF02789 Cytosol aminopeptidase family, N-terminal domain IXO608_012730 PF04542 Sigma-70 region 2 IXO608_012730 PF08281 Sigma-70, region 4 IXO608_012735 PF00199 Catalase IXO608_012755 PF00892 EamA-like transporter family IXO608_012780 PF00753 Metallo-beta-lactamase superfamily IXO608_012785 PF00579 tRNA synthetases class I (W and Y) IXO608_012790 PF05532 CsbD-like IXO608_012805 PF00491 Arginase family IXO608_012825 PF02223 Thymidylate kinase IXO608_012840 PF03309 Type III pantothenate kinase IXO608_012845 PF02237 Biotin protein ligase C terminal domain IXO608_012845 PF03099 Biotin/lipoate A/B protein ligase family IXO608_012845 PF08279 HTH domain IXO608_012870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_012875 PF00072 Response regulator receiver domain IXO608_012875 PF00486 Transcriptional regulatory protein, C terminal IXO608_012885 PF01207 Dihydrouridine synthase (Dus) IXO608_012900 PF00199 Catalase IXO608_012900 PF06628 Catalase-related immune-responsive IXO608_012905 PF13533 Biotin-lipoyl like IXO608_012925 PF13307 Helicase C-terminal domain IXO608_012925 PF06733 DEAD_2 IXO608_012940 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IXO608_012940 PF01488 Shikimate / quinate 5-dehydrogenase IXO608_012940 PF08501 Shikimate dehydrogenase substrate binding domain IXO608_012955 PF00667 FAD binding domain IXO608_012955 PF00258 Flavodoxin IXO608_012955 PF00175 Oxidoreductase NAD-binding domain IXO608_012965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_012965 PF03466 LysR substrate binding domain IXO608_012980 PF00490 Delta-aminolevulinic acid dehydratase IXO608_013005 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region IXO608_013005 PF00326 Prolyl oligopeptidase family IXO608_013010 PF00043 Glutathione S-transferase, C-terminal domain IXO608_013010 PF02798 Glutathione S-transferase, N-terminal domain IXO608_013035 PF04820 Tryptophan halogenase IXO608_013050 PF00005 ABC transporter IXO608_013060 PF01381 Helix-turn-helix IXO608_013070 PF02583 Metal-sensitive transcriptional repressor IXO608_013075 PF01545 Cation efflux family IXO608_013080 PF00175 Oxidoreductase NAD-binding domain IXO608_013080 PF01383 CpcD/allophycocyanin linker domain IXO608_013085 PF00005 ABC transporter IXO608_013090 PF01061 ABC-2 type transporter IXO608_013100 PF02558 Ketopantoate reductase PanE/ApbA IXO608_013100 PF08546 Ketopantoate reductase PanE/ApbA C terminal IXO608_013170 PF01820 D-ala D-ala ligase N-terminus IXO608_013170 PF07478 D-ala D-ala ligase C-terminus IXO608_013180 PF03109 ABC1 family IXO608_013190 PF00849 RNA pseudouridylate synthase IXO608_013200 PF00472 RF-1 domain IXO608_013220 PF01432 Peptidase family M3 IXO608_013250 PF05336 L-rhamnose mutarotase IXO608_013255 PF07690 Major Facilitator Superfamily IXO608_013260 PF09339 IclR helix-turn-helix domain IXO608_013260 PF01614 Bacterial transcriptional regulator IXO608_013265 PF02659 Putative manganese efflux pump IXO608_013270 PF00512 His Kinase A (phospho-acceptor) domain IXO608_013270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_013280 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IXO608_013280 PF06165 Glycosyltransferase family 36 IXO608_013300 PF01011 PQQ enzyme repeat IXO608_013300 PF13360 PQQ-like domain IXO608_013300 PF13570 PQQ-like domain IXO608_013375 PF00005 ABC transporter IXO608_013380 PF02405 Permease MlaE IXO608_013385 PF02470 MlaD protein IXO608_013390 PF05494 MlaC protein IXO608_013400 PF04333 MlaA lipoprotein IXO608_013420 PF06827 Zinc finger found in FPG and IleRS IXO608_013420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IXO608_013420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IXO608_013470 PF01590 GAF domain IXO608_013470 PF08446 PAS fold IXO608_013470 PF13426 PAS domain IXO608_013470 PF00360 Phytochrome region IXO608_013475 PF01126 Heme oxygenase IXO608_013480 PF07690 Major Facilitator Superfamily IXO608_013485 PF01263 Aldose 1-epimerase IXO608_013490 PF05598 Transposase domain (DUF772) IXO608_013490 PF01609 Transposase DDE domain IXO608_013505 PF02810 SEC-C motif IXO608_013515 PF00150 Cellulase (glycosyl hydrolase family 5) IXO608_013525 PF00150 Cellulase (glycosyl hydrolase family 5) IXO608_013535 PF00150 Cellulase (glycosyl hydrolase family 5) IXO608_013540 PF00107 Zinc-binding dehydrogenase IXO608_013540 PF08240 Alcohol dehydrogenase GroES-like domain IXO608_013585 PF01037 Lrp/AsnC ligand binding domain IXO608_013590 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IXO608_013630 PF01553 Acyltransferase IXO608_013645 PF00356 Bacterial regulatory proteins, lacI family IXO608_013660 PF04820 Tryptophan halogenase IXO608_013665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IXO608_013670 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) IXO608_013675 PF04337 Protein of unknown function, DUF480 IXO608_013690 PF13361 UvrD-like helicase C-terminal domain IXO608_013690 PF00580 UvrD/REP helicase N-terminal domain IXO608_013695 PF00265 Thymidine kinase IXO608_013705 PF04349 Periplasmic glucan biosynthesis protein, MdoG IXO608_013725 PF12697 Alpha/beta hydrolase family IXO608_013735 PF13649 Methyltransferase domain IXO608_013755 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_013770 PF01134 Glucose inhibited division protein A IXO608_013770 PF13932 GidA associated domain IXO608_013805 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IXO608_013805 PF04717 Type VI secretion system, phage-baseplate injector IXO608_013805 PF13296 Putative type VI secretion system Rhs element Vgr IXO608_013810 PF05598 Transposase domain (DUF772) IXO608_013815 PF17810 Arginine decarboxylase helical bundle domain IXO608_013815 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IXO608_013815 PF17944 Arginine decarboxylase C-terminal helical extension IXO608_013820 PF17284 Spermidine synthase tetramerisation domain IXO608_013850 PF00543 Nitrogen regulatory protein P-II IXO608_013855 PF04380 Membrane fusogenic activity IXO608_013860 PF13335 Magnesium chelatase, subunit ChlI C-terminal IXO608_013860 PF01078 Magnesium chelatase, subunit ChlI IXO608_013905 PF00128 Alpha amylase, catalytic domain IXO608_013905 PF11896 Domain of unknown function (DUF3416) IXO608_013910 PF16657 Maltogenic Amylase, C-terminal domain IXO608_013910 PF00128 Alpha amylase, catalytic domain IXO608_013915 PF00128 Alpha amylase, catalytic domain IXO608_013915 PF02806 Alpha amylase, C-terminal all-beta domain IXO608_013915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IXO608_013940 PF00356 Bacterial regulatory proteins, lacI family IXO608_013950 PF05598 Transposase domain (DUF772) IXO608_013985 PF00080 Copper/zinc superoxide dismutase (SODC) IXO608_013990 PF00080 Copper/zinc superoxide dismutase (SODC) IXO608_013995 PF02954 Bacterial regulatory protein, Fis family IXO608_013995 PF00158 Sigma-54 interaction domain IXO608_013995 PF00072 Response regulator receiver domain IXO608_014000 PF00512 His Kinase A (phospho-acceptor) domain IXO608_014000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_014000 PF00989 PAS fold IXO608_014005 PF00909 Ammonium Transporter Family IXO608_014010 PF00543 Nitrogen regulatory protein P-II IXO608_014015 PF00120 Glutamine synthetase, catalytic domain IXO608_014015 PF03951 Glutamine synthetase, beta-Grasp domain IXO608_014020 PF02673 Bacitracin resistance protein BacA IXO608_014060 PF03061 Thioesterase superfamily IXO608_014065 PF13091 PLD-like domain IXO608_014080 PF01883 Iron-sulfur cluster assembly protein IXO608_014080 PF10609 NUBPL iron-transfer P-loop NTPase IXO608_014100 PF01381 Helix-turn-helix IXO608_014105 PF13657 HipA N-terminal domain IXO608_014105 PF07804 HipA-like C-terminal domain IXO608_014110 PF10017 Histidine-specific methyltransferase, SAM-dependent IXO608_014115 PF03781 Sulfatase-modifying factor enzyme 1 IXO608_014115 PF12867 DinB superfamily IXO608_014125 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_014130 PF00005 ABC transporter IXO608_014130 PF00571 CBS domain IXO608_014145 PF00005 ABC transporter IXO608_014155 PF01734 Patatin-like phospholipase IXO608_014170 PF01609 Transposase DDE domain IXO608_014170 PF05598 Transposase domain (DUF772) IXO608_014195 PF00248 Aldo/keto reductase family IXO608_014200 PF00107 Zinc-binding dehydrogenase IXO608_014200 PF16884 N-terminal domain of oxidoreductase IXO608_014205 PF00248 Aldo/keto reductase family IXO608_014215 PF00849 RNA pseudouridylate synthase IXO608_014225 PF08482 ATP-dependent helicase C-terminal IXO608_014225 PF00270 DEAD/DEAH box helicase IXO608_014225 PF04408 Helicase associated domain (HA2) IXO608_014225 PF00271 Helicase conserved C-terminal domain IXO608_014230 PF07308 Protein of unknown function (DUF1456) IXO608_014235 PF13378 Enolase C-terminal domain-like IXO608_014235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IXO608_014240 PF01557 Fumarylacetoacetate (FAA) hydrolase family IXO608_014255 PF00248 Aldo/keto reductase family IXO608_014265 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain IXO608_014265 PF04616 Glycosyl hydrolases family 43 IXO608_014285 PF00196 Bacterial regulatory proteins, luxR family IXO608_014285 PF00072 Response regulator receiver domain IXO608_014290 PF13193 AMP-binding enzyme C-terminal domain IXO608_014290 PF16177 Acetyl-coenzyme A synthetase N-terminus IXO608_014290 PF00501 AMP-binding enzyme IXO608_014305 PF04341 Protein of unknown function, DUF485 IXO608_014310 PF00474 Sodium:solute symporter family IXO608_014325 PF03372 Endonuclease/Exonuclease/phosphatase family IXO608_014335 PF04226 Transglycosylase associated protein IXO608_014340 PF01648 4'-phosphopantetheinyl transferase superfamily IXO608_014345 PF16655 PhoD-like phosphatase, N-terminal domain IXO608_014345 PF09423 PhoD-like phosphatase IXO608_014350 PF16655 PhoD-like phosphatase, N-terminal domain IXO608_014350 PF09423 PhoD-like phosphatase IXO608_014355 PF02527 rRNA small subunit methyltransferase G IXO608_014370 PF00830 Ribosomal L28 family IXO608_014375 PF00471 Ribosomal protein L33 IXO608_014380 PF04909 Amidohydrolase IXO608_014395 PF04303 PrpF protein IXO608_014400 PF03737 Aldolase/RraA IXO608_014405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_014405 PF03466 LysR substrate binding domain IXO608_014410 PF13396 Phospholipase_D-nuclease N-terminal IXO608_014410 PF13091 PLD-like domain IXO608_014425 PF13361 UvrD-like helicase C-terminal domain IXO608_014425 PF00580 UvrD/REP helicase N-terminal domain IXO608_014440 PF13520 Amino acid permease IXO608_014445 PF02646 RmuC family IXO608_014455 PF00255 Glutathione peroxidase IXO608_014470 PF04055 Radical SAM superfamily IXO608_014480 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IXO608_014495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IXO608_014495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IXO608_014505 PF13180 PDZ domain IXO608_014505 PF03572 Peptidase family S41 IXO608_014510 PF01551 Peptidase family M23 IXO608_014520 PF04389 Peptidase family M28 IXO608_014565 PF02463 RecF/RecN/SMC N terminal domain IXO608_014570 PF01227 GTP cyclohydrolase I IXO608_014595 PF00083 Sugar (and other) transporter IXO608_014605 PF13396 Phospholipase_D-nuclease N-terminal IXO608_014605 PF13091 PLD-like domain IXO608_014625 PF05598 Transposase domain (DUF772) IXO608_014690 PF02595 Glycerate kinase family IXO608_014695 PF07690 Major Facilitator Superfamily IXO608_014710 PF17785 PUA-like domain IXO608_014710 PF10672 S-adenosylmethionine-dependent methyltransferase IXO608_014715 PF03741 Integral membrane protein TerC family IXO608_014720 PF01694 Rhomboid family IXO608_014725 PF03009 Glycerophosphoryl diester phosphodiesterase family IXO608_014735 PF01569 PAP2 superfamily IXO608_014740 PF01926 50S ribosome-binding GTPase IXO608_014740 PF12631 MnmE helical domain IXO608_014740 PF10396 GTP-binding protein TrmE N-terminus IXO608_014745 PF01522 Polysaccharide deacetylase IXO608_014750 PF02096 60Kd inner membrane protein IXO608_014750 PF14849 YidC periplasmic domain IXO608_014755 PF00825 Ribonuclease P IXO608_014760 PF00468 Ribosomal protein L34 IXO608_014765 PF08299 Bacterial dnaA protein helix-turn-helix IXO608_014765 PF00308 Bacterial dnaA protein IXO608_014765 PF11638 DnaA N-terminal domain IXO608_014770 PF02768 DNA polymerase III beta subunit, C-terminal domain IXO608_014770 PF00712 DNA polymerase III beta subunit, N-terminal domain IXO608_014770 PF02767 DNA polymerase III beta subunit, central domain IXO608_014775 PF02463 RecF/RecN/SMC N terminal domain IXO608_014780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_014780 PF01751 Toprim domain IXO608_014780 PF18053 DNA gyrase B subunit insert domain IXO608_014780 PF00986 DNA gyrase B subunit, carboxyl terminus IXO608_014780 PF00204 DNA gyrase B IXO608_014790 PF01435 Peptidase family M48 IXO608_014805 PF01618 MotA/TolQ/ExbB proton channel family IXO608_014810 PF02472 Biopolymer transport protein ExbD/TolR IXO608_014815 PF02472 Biopolymer transport protein ExbD/TolR IXO608_014820 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IXO608_014830 PF13091 PLD-like domain IXO608_014830 PF13396 Phospholipase_D-nuclease N-terminal IXO608_014840 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IXO608_014845 PF00155 Aminotransferase class I and II IXO608_014850 PF07715 TonB-dependent Receptor Plug Domain IXO608_014850 PF00593 TonB dependent receptor IXO608_014865 PF05598 Transposase domain (DUF772) IXO608_014865 PF01609 Transposase DDE domain IXO608_014870 PF01070 FMN-dependent dehydrogenase IXO608_014875 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family IXO608_014890 PF07055 Enoyl reductase FAD binding domain IXO608_014890 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IXO608_014890 PF12241 Trans-2-enoyl-CoA reductase catalytic region IXO608_014900 PF00294 pfkB family carbohydrate kinase IXO608_014910 PF05598 Transposase domain (DUF772) IXO608_014910 PF01609 Transposase DDE domain IXO608_014920 PF00005 ABC transporter IXO608_014930 PF05598 Transposase domain (DUF772) IXO608_014965 PF01609 Transposase DDE domain IXO608_014965 PF05598 Transposase domain (DUF772) IXO608_014970 PF00271 Helicase conserved C-terminal domain IXO608_014970 PF00270 DEAD/DEAH box helicase IXO608_014980 PF06903 VirK protein IXO608_015055 PF03150 Di-haem cytochrome c peroxidase IXO608_015070 PF13460 NAD(P)H-binding IXO608_015075 PF00128 Alpha amylase, catalytic domain IXO608_015075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IXO608_015085 PF00128 Alpha amylase, catalytic domain IXO608_015090 PF02446 4-alpha-glucanotransferase IXO608_015095 PF11941 Domain of unknown function (DUF3459) IXO608_015095 PF00128 Alpha amylase, catalytic domain IXO608_015095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IXO608_015100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IXO608_015100 PF00128 Alpha amylase, catalytic domain IXO608_015100 PF02806 Alpha amylase, C-terminal all-beta domain IXO608_015105 PF08323 Starch synthase catalytic domain IXO608_015105 PF00534 Glycosyl transferases group 1 IXO608_015110 PF00990 Diguanylate cyclase, GGDEF domain IXO608_015115 PF02638 Glycosyl hydrolase-like 10 IXO608_015120 PF05661 Protein of unknown function (DUF808) IXO608_015125 PF03109 ABC1 family IXO608_015140 PF00924 Mechanosensitive ion channel IXO608_015140 PF12795 Mechanosensitive ion channel porin domain IXO608_015140 PF12794 Mechanosensitive ion channel inner membrane domain 1 IXO608_015160 PF01464 Transglycosylase SLT domain IXO608_015170 PF03958 Bacterial type II/III secretion system short domain IXO608_015170 PF00263 Bacterial type II and III secretion system protein IXO608_015175 PF01311 Bacterial export proteins, family 1 IXO608_015185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IXO608_015185 PF02874 ATP synthase alpha/beta family, beta-barrel domain IXO608_015185 PF18269 T3SS EscN ATPase C-terminal domain IXO608_015200 PF01514 Secretory protein of YscJ/FliF family IXO608_015215 PF01312 FlhB HrpN YscU SpaS Family IXO608_015220 PF00771 FHIPEP family IXO608_015235 PF00813 FliP family IXO608_015240 PF01313 Bacterial export proteins, family 3 IXO608_015290 PF05819 NolX protein IXO608_015325 PF00595 PDZ domain IXO608_015335 PF00512 His Kinase A (phospho-acceptor) domain IXO608_015335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_015335 PF08521 Two-component sensor kinase N-terminal IXO608_015345 PF08338 Domain of unknown function (DUF1731) IXO608_015345 PF01370 NAD dependent epimerase/dehydratase family IXO608_015375 PF00665 Integrase core domain IXO608_015375 PF13936 Helix-turn-helix domain IXO608_015395 PF13344 Haloacid dehalogenase-like hydrolase IXO608_015395 PF00293 NUDIX domain IXO608_015430 PF13533 Biotin-lipoyl like IXO608_015440 PF00005 ABC transporter IXO608_015470 PF08845 Toxin SymE, type I toxin-antitoxin system IXO608_015485 PF03006 Haemolysin-III related IXO608_015490 PF00270 DEAD/DEAH box helicase IXO608_015490 PF09369 Domain of unknown function (DUF1998) IXO608_015490 PF00271 Helicase conserved C-terminal domain IXO608_015550 PF04898 Glutamate synthase central domain IXO608_015550 PF00310 Glutamine amidotransferases class-II IXO608_015550 PF01493 GXGXG motif IXO608_015550 PF01645 Conserved region in glutamate synthase IXO608_015555 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IXO608_015555 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_015605 PF17946 RecC C-terminal domain IXO608_015610 PF12705 PD-(D/E)XK nuclease superfamily IXO608_015610 PF00580 UvrD/REP helicase N-terminal domain IXO608_015610 PF13361 UvrD-like helicase C-terminal domain IXO608_015615 PF13538 UvrD-like helicase C-terminal domain IXO608_015620 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB IXO608_015625 PF01381 Helix-turn-helix IXO608_015695 PF02566 OsmC-like protein IXO608_015700 PF01047 MarR family IXO608_015730 PF00440 Bacterial regulatory proteins, tetR family IXO608_015735 PF00970 Oxidoreductase FAD-binding domain IXO608_015735 PF00111 2Fe-2S iron-sulfur cluster binding domain IXO608_015735 PF00175 Oxidoreductase NAD-binding domain IXO608_015740 PF00487 Fatty acid desaturase IXO608_015745 PF12792 CSS motif domain associated with EAL IXO608_015745 PF00563 EAL domain IXO608_015785 PF04616 Glycosyl hydrolases family 43 IXO608_015810 PF00553 Cellulose binding domain IXO608_015810 PF00331 Glycosyl hydrolase family 10 IXO608_015810 PF03422 Carbohydrate binding module (family 6) IXO608_015815 PF02614 Glucuronate isomerase IXO608_015835 PF01232 Mannitol dehydrogenase Rossmann domain IXO608_015835 PF08125 Mannitol dehydrogenase C-terminal domain IXO608_015840 PF07691 PA14 domain IXO608_015840 PF01915 Glycosyl hydrolase family 3 C-terminal domain IXO608_015840 PF00933 Glycosyl hydrolase family 3 N terminal domain IXO608_015840 PF14310 Fibronectin type III-like domain IXO608_015845 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain IXO608_015845 PF04616 Glycosyl hydrolases family 43 IXO608_015850 PF13378 Enolase C-terminal domain-like IXO608_015850 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IXO608_015860 PF07477 Glycosyl hydrolase family 67 C-terminus IXO608_015860 PF07488 Glycosyl hydrolase family 67 middle domain IXO608_015860 PF03648 Glycosyl hydrolase family 67 N-terminus IXO608_015865 PF00356 Bacterial regulatory proteins, lacI family IXO608_015875 PF01171 PP-loop family IXO608_015880 PF04381 Putative exonuclease, RdgC IXO608_015900 PF12697 Alpha/beta hydrolase family IXO608_015905 PF00762 Ferrochelatase IXO608_015915 PF02416 mttA/Hcf106 family IXO608_015920 PF02416 mttA/Hcf106 family IXO608_015925 PF00902 Sec-independent protein translocase protein (TatC) IXO608_015935 PF00958 GMP synthase C terminal domain IXO608_015935 PF00117 Glutamine amidotransferase class-I IXO608_015950 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IXO608_015950 PF00437 Type II/IV secretion system protein IXO608_015955 PF02091 Glycyl-tRNA synthetase alpha subunit IXO608_015960 PF05746 DALR anticodon binding domain IXO608_015960 PF02092 Glycyl-tRNA synthetase beta subunit IXO608_015965 PF13181 Tetratricopeptide repeat IXO608_015970 PF00593 TonB dependent receptor IXO608_015970 PF07715 TonB-dependent Receptor Plug Domain IXO608_015985 PF03969 AFG1-like ATPase IXO608_016005 PF02492 CobW/HypB/UreG, nucleotide-binding domain IXO608_016005 PF07683 Cobalamin synthesis protein cobW C-terminal domain IXO608_016060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IXO608_016060 PF02770 Acyl-CoA dehydrogenase, middle domain IXO608_016060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IXO608_016065 PF01039 Carboxyl transferase domain IXO608_016070 PF02785 Biotin carboxylase C-terminal domain IXO608_016070 PF00289 Biotin carboxylase, N-terminal domain IXO608_016070 PF00364 Biotin-requiring enzyme IXO608_016070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IXO608_016070 PF18140 Propionyl-coenzyme A carboxylase BT domain IXO608_016075 PF00326 Prolyl oligopeptidase family IXO608_016120 PF13454 FAD-NAD(P)-binding IXO608_016125 PF01014 Uricase IXO608_016125 PF09349 OHCU decarboxylase IXO608_016140 PF00266 Aminotransferase class-V IXO608_016190 PF01026 TatD related DNase IXO608_016205 PF03466 LysR substrate binding domain IXO608_016205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_016210 PF07690 Major Facilitator Superfamily IXO608_016220 PF02146 Sir2 family IXO608_016225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IXO608_016230 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IXO608_016230 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IXO608_016250 PF00551 Formyl transferase IXO608_016255 PF00072 Response regulator receiver domain IXO608_016255 PF00486 Transcriptional regulatory protein, C terminal IXO608_016275 PF02677 Epoxyqueuosine reductase QueH IXO608_016280 PF03466 LysR substrate binding domain IXO608_016280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_016285 PF03358 NADPH-dependent FMN reductase IXO608_016295 PF01717 Cobalamin-independent synthase, Catalytic domain IXO608_016295 PF08267 Cobalamin-independent synthase, N-terminal domain IXO608_016300 PF03812 2-keto-3-deoxygluconate permease IXO608_016310 PF05368 NmrA-like family IXO608_016315 PF01638 HxlR-like helix-turn-helix IXO608_016360 PF04820 Tryptophan halogenase IXO608_016365 PF00550 Phosphopantetheine attachment site IXO608_016375 PF01553 Acyltransferase IXO608_016380 PF07977 FabA-like domain IXO608_016415 PF04357 TamB, inner membrane protein subunit of TAM complex IXO608_016420 PF01103 Surface antigen IXO608_016420 PF17243 POTRA domain TamA domain 1 IXO608_016435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IXO608_016435 PF07498 Rho termination factor, N-terminal domain IXO608_016435 PF07497 Rho termination factor, RNA-binding domain IXO608_016440 PF00085 Thioredoxin IXO608_016445 PF00271 Helicase conserved C-terminal domain IXO608_016445 PF12300 ATP-dependent RNA helicase RhlB IXO608_016445 PF00270 DEAD/DEAH box helicase IXO608_016450 PF00005 ABC transporter IXO608_016455 PF18075 FtsX extracellular domain IXO608_016460 PF01339 CheB methylesterase IXO608_016460 PF00072 Response regulator receiver domain IXO608_016465 PF03167 Uracil DNA glycosylase superfamily IXO608_016470 PF04542 Sigma-70 region 2 IXO608_016470 PF04545 Sigma-70, region 4 IXO608_016480 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_016500 PF00166 Chaperonin 10 Kd subunit IXO608_016505 PF00118 TCP-1/cpn60 chaperonin family IXO608_016515 PF00593 TonB dependent receptor IXO608_016515 PF07715 TonB-dependent Receptor Plug Domain IXO608_016530 PF00793 DAHP synthetase I family IXO608_016570 PF08450 SMP-30/Gluconolactonase/LRE-like region IXO608_016580 PF03710 Glutamate-ammonia ligase adenylyltransferase IXO608_016580 PF08335 GlnD PII-uridylyltransferase IXO608_016585 PF02592 Putative vitamin uptake transporter IXO608_016610 PF00881 Nitroreductase family IXO608_016615 PF04264 YceI-like domain IXO608_016645 PF01527 Transposase IXO608_016650 PF13333 Integrase core domain IXO608_016650 PF00665 Integrase core domain IXO608_016650 PF13276 HTH-like domain IXO608_016665 PF03377 TAL effector repeat IXO608_016680 PF00456 Transketolase, thiamine diphosphate binding domain IXO608_016680 PF17831 Pyruvate dehydrogenase E1 component middle domain IXO608_016705 PF01367 5'-3' exonuclease, C-terminal SAM fold IXO608_016705 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IXO608_016705 PF00476 DNA polymerase family A IXO608_016705 PF01612 3'-5' exonuclease IXO608_016710 PF01218 Coproporphyrinogen III oxidase IXO608_016720 PF05598 Transposase domain (DUF772) IXO608_016720 PF01609 Transposase DDE domain IXO608_016740 PF00920 Dehydratase family IXO608_016745 PF03692 Putative zinc- or iron-chelating domain IXO608_016750 PF00132 Bacterial transferase hexapeptide (six repeats) IXO608_016775 PF07690 Major Facilitator Superfamily IXO608_016780 PF11871 Domain of unknown function (DUF3391) IXO608_016780 PF01966 HD domain IXO608_016790 PF05598 Transposase domain (DUF772) IXO608_016800 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family IXO608_016805 PF00501 AMP-binding enzyme IXO608_016810 PF03692 Putative zinc- or iron-chelating domain IXO608_016815 PF00561 alpha/beta hydrolase fold IXO608_016825 PF01555 DNA methylase IXO608_016830 PF02661 Fic/DOC family IXO608_016830 PF13784 Fic/DOC family N-terminal IXO608_016835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IXO608_016835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IXO608_016850 PF00588 SpoU rRNA Methylase family IXO608_016855 PF07690 Major Facilitator Superfamily IXO608_016870 PF00158 Sigma-54 interaction domain IXO608_016870 PF00072 Response regulator receiver domain IXO608_016870 PF02954 Bacterial regulatory protein, Fis family IXO608_016875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_016875 PF00512 His Kinase A (phospho-acceptor) domain IXO608_016880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IXO608_016880 PF00205 Thiamine pyrophosphate enzyme, central domain IXO608_016880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IXO608_016890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IXO608_016890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IXO608_016895 PF02556 Preprotein translocase subunit SecB IXO608_016900 PF00581 Rhodanese-like domain IXO608_016935 PF07063 Domain of unknown function (DUF1338) IXO608_016940 PF00873 AcrB/AcrD/AcrF family IXO608_016945 PF00873 AcrB/AcrD/AcrF family IXO608_016950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IXO608_016955 PF01546 Peptidase family M20/M25/M40 IXO608_016955 PF07687 Peptidase dimerisation domain IXO608_016965 PF14489 QueF-like protein IXO608_016965 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IXO608_016970 PF00872 Transposase, Mutator family IXO608_016980 PF01609 Transposase DDE domain IXO608_016980 PF05598 Transposase domain (DUF772) IXO608_017010 PF05598 Transposase domain (DUF772) IXO608_017020 PF03971 Monomeric isocitrate dehydrogenase IXO608_017040 PF00117 Glutamine amidotransferase class-I IXO608_017050 PF02885 Glycosyl transferase family, helical bundle domain IXO608_017050 PF00591 Glycosyl transferase family, a/b domain IXO608_017055 PF00218 Indole-3-glycerol phosphate synthase IXO608_017065 PF00027 Cyclic nucleotide-binding domain IXO608_017065 PF00325 Bacterial regulatory proteins, crp family IXO608_017070 PF02675 S-adenosylmethionine decarboxylase IXO608_017075 PF00893 Small Multidrug Resistance protein IXO608_017080 PF03232 Ubiquinone biosynthesis protein COQ7 IXO608_017085 PF00572 Ribosomal protein L13 IXO608_017090 PF00380 Ribosomal protein S9/S16 IXO608_017105 PF00293 NUDIX domain IXO608_017115 PF00210 Ferritin-like domain IXO608_017130 PF14850 DNA-binding domain of Proline dehydrogenase IXO608_017130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IXO608_017130 PF01619 Proline dehydrogenase IXO608_017130 PF00171 Aldehyde dehydrogenase family IXO608_017140 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IXO608_017140 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IXO608_017145 PF00115 Cytochrome C and Quinol oxidase polypeptide I IXO608_017155 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IXO608_017160 PF00510 Cytochrome c oxidase subunit III IXO608_017185 PF01040 UbiA prenyltransferase family IXO608_017200 PF13593 SBF-like CPA transporter family (DUF4137) IXO608_017220 PF10410 DnaB-helicase binding domain of primase IXO608_017220 PF01807 CHC2 zinc finger IXO608_017220 PF08278 DNA primase DnaG DnaB-binding IXO608_017220 PF08275 DNA primase catalytic core, N-terminal domain IXO608_017225 PF03631 Virulence factor BrkB IXO608_017235 PF09424 Yqey-like protein IXO608_017240 PF01165 Ribosomal protein S21 IXO608_017245 PF00814 Glycoprotease family IXO608_017250 PF02152 Dihydroneopterin aldolase IXO608_017255 PF00933 Glycosyl hydrolase family 3 N terminal domain IXO608_017255 PF14310 Fibronectin type III-like domain IXO608_017255 PF01915 Glycosyl hydrolase family 3 C-terminal domain IXO608_017285 PF07995 Glucose / Sorbosone dehydrogenase IXO608_017290 PF05360 yiaA/B two helix domain IXO608_017325 PF13520 Amino acid permease IXO608_017360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IXO608_017360 PF13378 Enolase C-terminal domain-like IXO608_017370 PF01510 N-acetylmuramoyl-L-alanine amidase IXO608_017375 PF01427 D-ala-D-ala dipeptidase IXO608_017405 PF05598 Transposase domain (DUF772) IXO608_017405 PF01609 Transposase DDE domain IXO608_017455 PF02803 Thiolase, C-terminal domain IXO608_017455 PF00108 Thiolase, N-terminal domain IXO608_017490 PF00676 Dehydrogenase E1 component IXO608_017500 PF03301 Tryptophan 2,3-dioxygenase IXO608_017505 PF00854 POT family IXO608_017515 PF01047 MarR family IXO608_017520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IXO608_017525 PF04209 homogentisate 1,2-dioxygenase IXO608_017540 PF03334 Na+/H+ antiporter subunit IXO608_017545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IXO608_017555 PF00361 Proton-conducting membrane transporter IXO608_017560 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IXO608_017565 PF00361 Proton-conducting membrane transporter IXO608_017565 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IXO608_017565 PF13244 Domain of unknown function (DUF4040) IXO608_017565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IXO608_017590 PF01259 SAICAR synthetase IXO608_017595 PF00226 DnaJ domain IXO608_017595 PF05099 Tellurite resistance protein TerB IXO608_017600 PF00834 Ribulose-phosphate 3 epimerase family IXO608_017605 PF00583 Acetyltransferase (GNAT) family IXO608_017610 PF00781 Diacylglycerol kinase catalytic domain IXO608_017615 PF04715 Anthranilate synthase component I, N terminal region IXO608_017615 PF00425 chorismate binding enzyme IXO608_017635 PF00106 short chain dehydrogenase IXO608_017675 PF07759 Protein of unknown function (DUF1615) IXO608_017695 PF00892 EamA-like transporter family IXO608_017700 PF03330 Lytic transglycolase IXO608_017705 PF00041 Fibronectin type III domain IXO608_017705 PF01341 Glycosyl hydrolases family 6 IXO608_017705 PF00553 Cellulose binding domain IXO608_017715 PF00324 Amino acid permease IXO608_017725 PF01544 CorA-like Mg2+ transporter protein IXO608_017745 PF01204 Trehalase IXO608_017780 PF00563 EAL domain IXO608_017780 PF03707 Bacterial signalling protein N terminal repeat IXO608_017780 PF00990 Diguanylate cyclase, GGDEF domain IXO608_017795 PF00553 Cellulose binding domain IXO608_017795 PF00150 Cellulase (glycosyl hydrolase family 5) IXO608_017800 PF01740 STAS domain IXO608_017800 PF00916 Sulfate permease family IXO608_017825 PF13632 Glycosyl transferase family group 2 IXO608_017835 PF07694 5TMR of 5TMR-LYT IXO608_017835 PF06580 Histidine kinase IXO608_017840 PF00072 Response regulator receiver domain IXO608_017840 PF04397 LytTr DNA-binding domain IXO608_017845 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IXO608_017845 PF03900 Porphobilinogen deaminase, C-terminal domain IXO608_017870 PF00326 Prolyl oligopeptidase family IXO608_017870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IXO608_017885 PF00155 Aminotransferase class I and II IXO608_017890 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IXO608_017890 PF00326 Prolyl oligopeptidase family IXO608_017905 PF01678 Diaminopimelate epimerase IXO608_017915 PF02899 Phage integrase, N-terminal SAM-like domain IXO608_017915 PF00589 Phage integrase family IXO608_017925 PF00227 Proteasome subunit IXO608_017930 PF07724 AAA domain (Cdc48 subfamily) IXO608_017930 PF10431 C-terminal, D2-small domain, of ClpB protein IXO608_017930 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_017945 PF11838 ERAP1-like C-terminal domain IXO608_017945 PF01433 Peptidase family M1 domain IXO608_017950 PF00990 Diguanylate cyclase, GGDEF domain IXO608_017950 PF08448 PAS fold IXO608_017955 PF01209 ubiE/COQ5 methyltransferase family IXO608_017965 PF13533 Biotin-lipoyl like IXO608_017975 PF13673 Acetyltransferase (GNAT) domain IXO608_017995 PF00294 pfkB family carbohydrate kinase IXO608_018005 PF04085 rod shape-determining protein MreC IXO608_018015 PF00905 Penicillin binding protein transpeptidase domain IXO608_018015 PF03717 Penicillin-binding Protein dimerisation domain IXO608_018020 PF01098 Cell cycle protein IXO608_018030 PF04717 Type VI secretion system, phage-baseplate injector IXO608_018045 PF04717 Type VI secretion system, phage-baseplate injector IXO608_018045 PF13296 Putative type VI secretion system Rhs element Vgr IXO608_018045 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IXO608_018050 PF01476 LysM domain IXO608_018050 PF01471 Putative peptidoglycan binding domain IXO608_018050 PF01510 N-acetylmuramoyl-L-alanine amidase IXO608_018070 PF13406 Transglycosylase SLT domain IXO608_018075 PF03330 Lytic transglycolase IXO608_018075 PF05036 Sporulation related domain IXO608_018080 PF07943 Penicillin-binding protein 5, C-terminal domain IXO608_018080 PF00768 D-alanyl-D-alanine carboxypeptidase IXO608_018095 PF04359 Protein of unknown function (DUF493) IXO608_018100 PF03099 Biotin/lipoate A/B protein ligase family IXO608_018105 PF04055 Radical SAM superfamily IXO608_018105 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IXO608_018115 PF07669 Eco57I restriction-modification methylase IXO608_018115 PF12950 TaqI-like C-terminal specificity domain IXO608_018125 PF11818 C-terminal domain of tail specific protease (DUF3340) IXO608_018125 PF00595 PDZ domain IXO608_018125 PF03572 Peptidase family S41 IXO608_018125 PF17804 Tail specific protease N-terminal domain IXO608_018135 PF01467 Cytidylyltransferase-like IXO608_018135 PF00293 NUDIX domain IXO608_018170 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IXO608_018170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IXO608_018175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IXO608_018175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IXO608_018180 PF04972 BON domain IXO608_018185 PF00360 Phytochrome region IXO608_018185 PF08446 PAS fold IXO608_018185 PF00512 His Kinase A (phospho-acceptor) domain IXO608_018185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_018185 PF01590 GAF domain IXO608_018190 PF00072 Response regulator receiver domain IXO608_018195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_018195 PF00512 His Kinase A (phospho-acceptor) domain IXO608_018200 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IXO608_018250 PF16355 Domain of unknown function (DUF4982) IXO608_018250 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 IXO608_018250 PF02837 Glycosyl hydrolases family 2, sugar binding domain IXO608_018250 PF00703 Glycosyl hydrolases family 2 IXO608_018250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IXO608_018265 PF00392 Bacterial regulatory proteins, gntR family IXO608_018265 PF07702 UTRA domain IXO608_018270 PF07690 Major Facilitator Superfamily IXO608_018275 PF00356 Bacterial regulatory proteins, lacI family IXO608_018280 PF01380 SIS domain IXO608_018285 PF01979 Amidohydrolase family IXO608_018295 PF00535 Glycosyl transferase family 2 IXO608_018300 PF01522 Polysaccharide deacetylase IXO608_018300 PF14883 Hypothetical glycosyl hydrolase family 13 IXO608_018340 PF12627 Probable RNA and SrmB- binding site of polymerase A IXO608_018340 PF01966 HD domain IXO608_018340 PF01743 Poly A polymerase head domain IXO608_018365 PF01527 Transposase IXO608_018370 PF01609 Transposase DDE domain IXO608_018370 PF05598 Transposase domain (DUF772) IXO608_018380 PF05598 Transposase domain (DUF772) IXO608_018380 PF01609 Transposase DDE domain IXO608_018390 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_018390 PF13291 ACT domain IXO608_018395 PF05598 Transposase domain (DUF772) IXO608_018395 PF01609 Transposase DDE domain IXO608_018425 PF00034 Cytochrome c IXO608_018430 PF01926 50S ribosome-binding GTPase IXO608_018445 PF04107 Glutamate-cysteine ligase family 2(GCS2) IXO608_018450 PF00512 His Kinase A (phospho-acceptor) domain IXO608_018450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_018450 PF00672 HAMP domain IXO608_018485 PF16527 Two-component sensor protein CpxA, periplasmic domain IXO608_018485 PF00512 His Kinase A (phospho-acceptor) domain IXO608_018485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_018485 PF00672 HAMP domain IXO608_018490 PF00072 Response regulator receiver domain IXO608_018490 PF00486 Transcriptional regulatory protein, C terminal IXO608_018500 PF02583 Metal-sensitive transcriptional repressor IXO608_018505 PF00107 Zinc-binding dehydrogenase IXO608_018505 PF08240 Alcohol dehydrogenase GroES-like domain IXO608_018515 PF00756 Putative esterase IXO608_018535 PF00005 ABC transporter IXO608_018535 PF12848 ABC transporter IXO608_018555 PF00464 Serine hydroxymethyltransferase IXO608_018565 PF03477 ATP cone domain IXO608_018575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IXO608_018575 PF01872 RibD C-terminal domain IXO608_018585 PF00677 Lumazine binding domain IXO608_018590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IXO608_018590 PF00925 GTP cyclohydrolase II IXO608_018595 PF00885 6,7-dimethyl-8-ribityllumazine synthase IXO608_018600 PF01029 NusB family IXO608_018605 PF00586 AIR synthase related protein, N-terminal domain IXO608_018605 PF02769 AIR synthase related protein, C-terminal domain IXO608_018625 PF03814 Potassium-transporting ATPase A subunit IXO608_018635 PF02669 K+-transporting ATPase, c chain IXO608_018640 PF02702 Osmosensitive K+ channel His kinase sensor domain IXO608_018640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_018640 PF13492 GAF domain IXO608_018640 PF13493 Domain of unknown function (DUF4118) IXO608_018640 PF00512 His Kinase A (phospho-acceptor) domain IXO608_018645 PF00072 Response regulator receiver domain IXO608_018645 PF00486 Transcriptional regulatory protein, C terminal IXO608_018650 PF02913 FAD linked oxidases, C-terminal domain IXO608_018650 PF01565 FAD binding domain IXO608_018655 PF04307 LexA-binding, inner membrane-associated putative hydrolase IXO608_018660 PF02021 Uncharacterised protein family UPF0102 IXO608_018670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IXO608_018690 PF02381 MraZ protein, putative antitoxin-like IXO608_018695 PF01795 MraW methylase family IXO608_018700 PF04999 Cell division protein FtsL IXO608_018705 PF03717 Penicillin-binding Protein dimerisation domain IXO608_018705 PF00905 Penicillin binding protein transpeptidase domain IXO608_018710 PF01225 Mur ligase family, catalytic domain IXO608_018710 PF02875 Mur ligase family, glutamate ligase domain IXO608_018710 PF08245 Mur ligase middle domain IXO608_018715 PF01225 Mur ligase family, catalytic domain IXO608_018715 PF08245 Mur ligase middle domain IXO608_018715 PF02875 Mur ligase family, glutamate ligase domain IXO608_018720 PF00953 Glycosyl transferase family 4 IXO608_018725 PF01098 Cell cycle protein IXO608_018730 PF04101 Glycosyltransferase family 28 C-terminal domain IXO608_018730 PF03033 Glycosyltransferase family 28 N-terminal domain IXO608_018735 PF01225 Mur ligase family, catalytic domain IXO608_018735 PF02875 Mur ligase family, glutamate ligase domain IXO608_018735 PF08245 Mur ligase middle domain IXO608_018740 PF07478 D-ala D-ala ligase C-terminus IXO608_018740 PF01820 D-ala D-ala ligase N-terminus IXO608_018745 PF03799 Cell division protein FtsQ IXO608_018745 PF08478 POTRA domain, FtsQ-type IXO608_018750 PF02491 SHS2 domain inserted in FTSA IXO608_018755 PF12327 FtsZ family, C-terminal domain IXO608_018755 PF00091 Tubulin/FtsZ family, GTPase domain IXO608_018760 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IXO608_018770 PF01476 LysM domain IXO608_018770 PF01551 Peptidase family M23 IXO608_018775 PF02810 SEC-C motif IXO608_018775 PF07517 SecA DEAD-like domain IXO608_018775 PF01043 SecA preprotein cross-linking domain IXO608_018775 PF07516 SecA Wing and Scaffold domain IXO608_018785 PF00293 NUDIX domain IXO608_018800 PF02219 Methylenetetrahydrofolate reductase IXO608_018810 PF00107 Zinc-binding dehydrogenase IXO608_018810 PF08659 KR domain IXO608_018810 PF00550 Phosphopantetheine attachment site IXO608_018810 PF14765 Polyketide synthase dehydratase IXO608_018810 PF16197 Ketoacyl-synthetase C-terminal extension IXO608_018810 PF00109 Beta-ketoacyl synthase, N-terminal domain IXO608_018810 PF02801 Beta-ketoacyl synthase, C-terminal domain IXO608_018810 PF08240 Alcohol dehydrogenase GroES-like domain IXO608_018810 PF00698 Acyl transferase domain IXO608_018815 PF09286 Pro-kumamolisin, activation domain IXO608_018815 PF00082 Subtilase family IXO608_018825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IXO608_018855 PF13649 Methyltransferase domain IXO608_018860 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IXO608_018860 PF05221 S-adenosyl-L-homocysteine hydrolase IXO608_018870 PF00311 Phosphoenolpyruvate carboxylase IXO608_018895 PF00328 Histidine phosphatase superfamily (branch 2) IXO608_018905 PF02773 S-adenosylmethionine synthetase, C-terminal domain IXO608_018905 PF02772 S-adenosylmethionine synthetase, central domain IXO608_018905 PF00438 S-adenosylmethionine synthetase, N-terminal domain IXO608_018920 PF01207 Dihydrouridine synthase (Dus) IXO608_018930 PF00294 pfkB family carbohydrate kinase IXO608_018935 PF07670 Nucleoside recognition IXO608_018935 PF07662 Na+ dependent nucleoside transporter C-terminus IXO608_018935 PF01773 Na+ dependent nucleoside transporter N-terminus IXO608_018945 PF00248 Aldo/keto reductase family IXO608_018985 PF00005 ABC transporter IXO608_018995 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IXO608_019005 PF00005 ABC transporter IXO608_019010 PF13472 GDSL-like Lipase/Acylhydrolase family IXO608_019015 PF00486 Transcriptional regulatory protein, C terminal IXO608_019015 PF00072 Response regulator receiver domain IXO608_019020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_019020 PF00512 His Kinase A (phospho-acceptor) domain IXO608_019020 PF08521 Two-component sensor kinase N-terminal IXO608_019045 PF01219 Prokaryotic diacylglycerol kinase IXO608_019065 PF01790 Prolipoprotein diacylglyceryl transferase IXO608_019070 PF00303 Thymidylate synthase IXO608_019080 PF00186 Dihydrofolate reductase IXO608_019085 PF00149 Calcineurin-like phosphoesterase IXO608_019090 PF04379 ApaG domain IXO608_019095 PF00398 Ribosomal RNA adenine dimethylase IXO608_019105 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IXO608_019110 PF09312 SurA N-terminal domain IXO608_019110 PF00639 PPIC-type PPIASE domain IXO608_019115 PF04453 LPS transport system D IXO608_019115 PF03968 OstA-like protein IXO608_019120 PF00850 Histone deacetylase domain IXO608_019125 PF01923 Cobalamin adenosyltransferase IXO608_019135 PF01494 FAD binding domain IXO608_019140 PF01494 FAD binding domain IXO608_019170 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IXO608_019180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_019180 PF03466 LysR substrate binding domain IXO608_019185 PF00501 AMP-binding enzyme IXO608_019185 PF13193 AMP-binding enzyme C-terminal domain IXO608_019190 PF00171 Aldehyde dehydrogenase family IXO608_019195 PF00378 Enoyl-CoA hydratase/isomerase IXO608_019215 PF08450 SMP-30/Gluconolactonase/LRE-like region IXO608_019220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IXO608_019220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IXO608_019225 PF01728 FtsJ-like methyltransferase IXO608_019225 PF18125 RlmM ferredoxin-like domain IXO608_019270 PF05598 Transposase domain (DUF772) IXO608_019270 PF01609 Transposase DDE domain IXO608_019290 PF00749 tRNA synthetases class I (E and Q), catalytic domain IXO608_019290 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IXO608_019305 PF00990 Diguanylate cyclase, GGDEF domain IXO608_019305 PF00072 Response regulator receiver domain IXO608_019310 PF00072 Response regulator receiver domain IXO608_019310 PF01627 Hpt domain IXO608_019310 PF00512 His Kinase A (phospho-acceptor) domain IXO608_019310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_019310 PF00672 HAMP domain IXO608_019310 PF17149 Periplasmic sensor domain found in signal transduction proteins IXO608_019350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IXO608_019350 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_019355 PF00107 Zinc-binding dehydrogenase IXO608_019355 PF08240 Alcohol dehydrogenase GroES-like domain IXO608_019360 PF05736 OprF membrane domain IXO608_019360 PF00691 OmpA family IXO608_019370 PF00849 RNA pseudouridylate synthase IXO608_019380 PF00155 Aminotransferase class I and II IXO608_019390 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_019395 PF00528 Binding-protein-dependent transport system inner membrane component IXO608_019400 PF12857 TOBE-like domain IXO608_019400 PF00005 ABC transporter IXO608_019400 PF17850 CysA C-terminal regulatory domain IXO608_019410 PF08240 Alcohol dehydrogenase GroES-like domain IXO608_019410 PF00107 Zinc-binding dehydrogenase IXO608_019425 PF10459 Peptidase S46 IXO608_019430 PF00300 Histidine phosphatase superfamily (branch 1) IXO608_019440 PF02875 Mur ligase family, glutamate ligase domain IXO608_019440 PF08245 Mur ligase middle domain IXO608_019455 PF00156 Phosphoribosyl transferase domain IXO608_019460 PF04305 Protein of unknown function (DUF455) IXO608_019480 PF00149 Calcineurin-like phosphoesterase IXO608_019485 PF01569 PAP2 superfamily IXO608_019490 PF00534 Glycosyl transferases group 1 IXO608_019490 PF13439 Glycosyltransferase Family 4 IXO608_019495 PF02541 Ppx/GppA phosphatase family IXO608_019500 PF13089 Polyphosphate kinase N-terminal domain IXO608_019500 PF13090 Polyphosphate kinase C-terminal domain 2 IXO608_019500 PF02503 Polyphosphate kinase middle domain IXO608_019500 PF17941 Polyphosphate kinase C-terminal domain 1 IXO608_019505 PF11808 Phosphate regulon sensor protein PhoR IXO608_019505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_019505 PF00512 His Kinase A (phospho-acceptor) domain IXO608_019505 PF00989 PAS fold IXO608_019510 PF00072 Response regulator receiver domain IXO608_019510 PF00486 Transcriptional regulatory protein, C terminal IXO608_019515 PF01435 Peptidase family M48 IXO608_019515 PF13181 Tetratricopeptide repeat IXO608_019520 PF00462 Glutaredoxin IXO608_019550 PF01625 Peptide methionine sulfoxide reductase IXO608_019575 PF00923 Transaldolase/Fructose-6-phosphate aldolase IXO608_019580 PF01272 Transcription elongation factor, GreA/GreB, C-term IXO608_019580 PF03449 Transcription elongation factor, N-terminal IXO608_019585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_019585 PF03466 LysR substrate binding domain IXO608_019590 PF13192 Thioredoxin domain IXO608_019590 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_019595 PF10417 C-terminal domain of 1-Cys peroxiredoxin IXO608_019595 PF00578 AhpC/TSA family IXO608_019600 PF05175 Methyltransferase small domain IXO608_019600 PF17827 PrmC N-terminal domain IXO608_019635 PF00561 alpha/beta hydrolase fold IXO608_019645 PF00293 NUDIX domain IXO608_019650 PF01367 5'-3' exonuclease, C-terminal SAM fold IXO608_019650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IXO608_019650 PF00476 DNA polymerase family A IXO608_019650 PF01612 3'-5' exonuclease IXO608_019665 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IXO608_019665 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IXO608_019665 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IXO608_019685 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IXO608_019690 PF02233 NAD(P) transhydrogenase beta subunit IXO608_019715 PF01063 Amino-transferase class IV IXO608_019725 PF04073 Aminoacyl-tRNA editing domain IXO608_019735 PF17189 Glycosyl hydrolase family 30 beta sandwich domain IXO608_019735 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain IXO608_019750 PF03358 NADPH-dependent FMN reductase IXO608_019755 PF03631 Virulence factor BrkB IXO608_019760 PF08534 Redoxin IXO608_019765 PF00708 Acylphosphatase IXO608_019775 PF03976 Polyphosphate kinase 2 (PPK2) IXO608_019780 PF00994 Probable molybdopterin binding domain IXO608_019790 PF03462 PCRF domain IXO608_019790 PF00472 RF-1 domain IXO608_019795 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IXO608_019795 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IXO608_019795 PF01488 Shikimate / quinate 5-dehydrogenase IXO608_019805 PF03550 Outer membrane lipoprotein LolB IXO608_019810 PF08544 GHMP kinases C terminal IXO608_019810 PF00288 GHMP kinases N terminal domain IXO608_019820 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IXO608_019820 PF14572 Phosphoribosyl synthetase-associated domain IXO608_019825 PF01386 Ribosomal L25p family IXO608_019825 PF14693 Ribosomal protein TL5, C-terminal domain IXO608_019830 PF01195 Peptidyl-tRNA hydrolase IXO608_019835 PF01926 50S ribosome-binding GTPase IXO608_019835 PF06071 Protein of unknown function (DUF933) IXO608_019855 PF00009 Elongation factor Tu GTP binding domain IXO608_019855 PF03144 Elongation factor Tu domain 2 IXO608_019855 PF03143 Elongation factor Tu C-terminal domain IXO608_019865 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IXO608_019870 PF00467 KOW motif IXO608_019870 PF02357 Transcription termination factor nusG IXO608_019875 PF00298 Ribosomal protein L11, RNA binding domain IXO608_019875 PF03946 Ribosomal protein L11, N-terminal domain IXO608_019880 PF00687 Ribosomal protein L1p/L10e family IXO608_019885 PF00466 Ribosomal protein L10 IXO608_019890 PF00542 Ribosomal protein L7/L12 C-terminal domain IXO608_019890 PF16320 Ribosomal protein L7/L12 dimerisation domain IXO608_019895 PF04561 RNA polymerase Rpb2, domain 2 IXO608_019895 PF04560 RNA polymerase Rpb2, domain 7 IXO608_019895 PF00562 RNA polymerase Rpb2, domain 6 IXO608_019895 PF10385 RNA polymerase beta subunit external 1 domain IXO608_019895 PF04565 RNA polymerase Rpb2, domain 3 IXO608_019895 PF04563 RNA polymerase beta subunit IXO608_019900 PF04998 RNA polymerase Rpb1, domain 5 IXO608_019900 PF04997 RNA polymerase Rpb1, domain 1 IXO608_019900 PF00623 RNA polymerase Rpb1, domain 2 IXO608_019900 PF04983 RNA polymerase Rpb1, domain 3 IXO608_019900 PF05000 RNA polymerase Rpb1, domain 4 IXO608_019905 PF00164 Ribosomal protein S12/S23 IXO608_019910 PF00177 Ribosomal protein S7p/S5e IXO608_019915 PF00679 Elongation factor G C-terminus IXO608_019915 PF14492 Elongation Factor G, domain II IXO608_019915 PF03764 Elongation factor G, domain IV IXO608_019915 PF00009 Elongation factor Tu GTP binding domain IXO608_019915 PF03144 Elongation factor Tu domain 2 IXO608_019920 PF03143 Elongation factor Tu C-terminal domain IXO608_019920 PF03144 Elongation factor Tu domain 2 IXO608_019920 PF00009 Elongation factor Tu GTP binding domain IXO608_019930 PF00338 Ribosomal protein S10p/S20e IXO608_019935 PF00297 Ribosomal protein L3 IXO608_019940 PF00573 Ribosomal protein L4/L1 family IXO608_019945 PF00276 Ribosomal protein L23 IXO608_019950 PF03947 Ribosomal Proteins L2, C-terminal domain IXO608_019950 PF00181 Ribosomal Proteins L2, RNA binding domain IXO608_019955 PF00203 Ribosomal protein S19 IXO608_019960 PF00237 Ribosomal protein L22p/L17e IXO608_019965 PF07650 KH domain IXO608_019965 PF00189 Ribosomal protein S3, C-terminal domain IXO608_019970 PF00252 Ribosomal protein L16p/L10e IXO608_019975 PF00831 Ribosomal L29 protein IXO608_019980 PF00366 Ribosomal protein S17 IXO608_019985 PF00238 Ribosomal protein L14p/L23e IXO608_019990 PF00467 KOW motif IXO608_019990 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IXO608_019995 PF00281 Ribosomal protein L5 IXO608_019995 PF00673 ribosomal L5P family C-terminus IXO608_020000 PF00253 Ribosomal protein S14p/S29e IXO608_020005 PF00410 Ribosomal protein S8 IXO608_020010 PF00347 Ribosomal protein L6 IXO608_020015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IXO608_020020 PF00333 Ribosomal protein S5, N-terminal domain IXO608_020020 PF03719 Ribosomal protein S5, C-terminal domain IXO608_020025 PF00327 Ribosomal protein L30p/L7e IXO608_020030 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IXO608_020035 PF00344 SecY translocase IXO608_020040 PF00416 Ribosomal protein S13/S18 IXO608_020045 PF00411 Ribosomal protein S11 IXO608_020050 PF00163 Ribosomal protein S4/S9 N-terminal domain IXO608_020050 PF01479 S4 domain IXO608_020055 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IXO608_020055 PF01000 RNA polymerase Rpb3/RpoA insert domain IXO608_020055 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IXO608_020060 PF01196 Ribosomal protein L17 IXO608_020110 PF02347 Glycine cleavage system P-protein IXO608_020130 PF03412 Peptidase C39 family IXO608_020130 PF00005 ABC transporter IXO608_020130 PF00664 ABC transporter transmembrane region IXO608_020150 PF08019 Phosphoethanolamine transferase EptA/EptB IXO608_020150 PF00884 Sulfatase IXO608_020160 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IXO608_020165 PF00072 Response regulator receiver domain IXO608_020165 PF00486 Transcriptional regulatory protein, C terminal IXO608_020170 PF08521 Two-component sensor kinase N-terminal IXO608_020170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_020170 PF00512 His Kinase A (phospho-acceptor) domain IXO608_020180 PF03776 Septum formation topological specificity factor MinE IXO608_020185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IXO608_020190 PF03775 Septum formation inhibitor MinC, C-terminal domain IXO608_020190 PF05209 Septum formation inhibitor MinC, N-terminal domain IXO608_020200 PF07730 Histidine kinase IXO608_020205 PF00196 Bacterial regulatory proteins, luxR family IXO608_020205 PF00072 Response regulator receiver domain IXO608_020220 PF00730 HhH-GPD superfamily base excision DNA repair protein IXO608_020245 PF02222 ATP-grasp domain IXO608_020275 PF06744 Type VI secretion protein IcmF C-terminal IXO608_020275 PF14331 ImcF-related N-terminal domain IXO608_020275 PF06761 Intracellular multiplication and human macrophage-killing IXO608_020285 PF00691 OmpA family IXO608_020285 PF04972 BON domain IXO608_020300 PF04717 Type VI secretion system, phage-baseplate injector IXO608_020300 PF06715 Gp5 C-terminal repeat (3 copies) IXO608_020350 PF03781 Sulfatase-modifying factor enzyme 1 IXO608_020355 PF04717 Type VI secretion system, phage-baseplate injector IXO608_020395 PF04717 Type VI secretion system, phage-baseplate injector IXO608_020395 PF13296 Putative type VI secretion system Rhs element Vgr IXO608_020395 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IXO608_020420 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IXO608_020425 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IXO608_020440 PF05947 Type VI secretion system, TssF IXO608_020450 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_020450 PF07724 AAA domain (Cdc48 subfamily) IXO608_020450 PF17871 AAA lid domain IXO608_020450 PF10431 C-terminal, D2-small domain, of ClpB protein IXO608_020460 PF04717 Type VI secretion system, phage-baseplate injector IXO608_020460 PF06715 Gp5 C-terminal repeat (3 copies) IXO608_020540 PF01420 Type I restriction modification DNA specificity domain IXO608_020550 PF02384 N-6 DNA Methylase IXO608_020560 PF00271 Helicase conserved C-terminal domain IXO608_020560 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IXO608_020560 PF04851 Type III restriction enzyme, res subunit IXO608_020560 PF08463 EcoEI R protein C-terminal IXO608_020580 PF02384 N-6 DNA Methylase IXO608_020585 PF08780 Nucleotidyltransferase substrate binding protein like IXO608_020600 PF01420 Type I restriction modification DNA specificity domain IXO608_020615 PF11867 Domain of unknown function (DUF3387) IXO608_020615 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IXO608_020615 PF18766 SWI2/SNF2 ATPase IXO608_020645 PF00300 Histidine phosphatase superfamily (branch 1) IXO608_020645 PF13456 Reverse transcriptase-like IXO608_020650 PF01256 Carbohydrate kinase IXO608_020655 PF01256 Carbohydrate kinase IXO608_020680 PF01726 LexA DNA binding domain IXO608_020680 PF00717 Peptidase S24-like IXO608_020695 PF14579 Helix-hairpin-helix motif IXO608_020695 PF02811 PHP domain IXO608_020695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IXO608_020695 PF07733 Bacterial DNA polymerase III alpha NTPase domain IXO608_020710 PF03169 OPT oligopeptide transporter protein IXO608_020735 PF07676 WD40-like Beta Propeller Repeat IXO608_020735 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region IXO608_020735 PF00326 Prolyl oligopeptidase family IXO608_020765 PF12833 Helix-turn-helix domain IXO608_020765 PF02311 AraC-like ligand binding domain IXO608_020785 PF01609 Transposase DDE domain IXO608_020785 PF05598 Transposase domain (DUF772) IXO608_020805 PF06628 Catalase-related immune-responsive IXO608_020805 PF00199 Catalase IXO608_020805 PF18011 C-terminal domain found in long catalases IXO608_020835 PF00162 Phosphoglycerate kinase IXO608_020840 PF13419 Haloacid dehalogenase-like hydrolase IXO608_020845 PF02887 Pyruvate kinase, alpha/beta domain IXO608_020845 PF00224 Pyruvate kinase, barrel domain IXO608_020850 PF00274 Fructose-bisphosphate aldolase class-I IXO608_020855 PF01661 Macro domain IXO608_020870 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_020875 PF10414 Sirohaem synthase dimerisation region IXO608_020875 PF14824 Sirohaem biosynthesis protein central IXO608_020875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IXO608_020880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_020880 PF03466 LysR substrate binding domain IXO608_020905 PF00672 HAMP domain IXO608_020905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_020905 PF00512 His Kinase A (phospho-acceptor) domain IXO608_020905 PF01627 Hpt domain IXO608_020905 PF00072 Response regulator receiver domain IXO608_020925 PF01507 Phosphoadenosine phosphosulfate reductase family IXO608_020930 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IXO608_020930 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IXO608_020935 PF00667 FAD binding domain IXO608_020935 PF00258 Flavodoxin IXO608_020935 PF00175 Oxidoreductase NAD-binding domain IXO608_020940 PF01507 Phosphoadenosine phosphosulfate reductase family IXO608_020945 PF00009 Elongation factor Tu GTP binding domain IXO608_020950 PF00529 HlyD membrane-fusion protein of T1SS IXO608_020950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IXO608_020955 PF00873 AcrB/AcrD/AcrF family IXO608_020960 PF11838 ERAP1-like C-terminal domain IXO608_020960 PF01433 Peptidase family M1 domain IXO608_020980 PF00588 SpoU rRNA Methylase family IXO608_020980 PF08032 RNA 2'-O ribose methyltransferase substrate binding IXO608_021005 PF01741 Large-conductance mechanosensitive channel, MscL IXO608_021010 PF01557 Fumarylacetoacetate (FAA) hydrolase family IXO608_021035 PF03600 Citrate transporter IXO608_021035 PF02080 TrkA-C domain IXO608_021040 PF02390 Putative methyltransferase IXO608_021045 PF05690 Thiazole biosynthesis protein ThiG IXO608_021055 PF00657 GDSL-like Lipase/Acylhydrolase IXO608_021055 PF03797 Autotransporter beta-domain IXO608_021125 PF01609 Transposase DDE domain IXO608_021125 PF05598 Transposase domain (DUF772) IXO608_021130 PF01609 Transposase DDE domain IXO608_021130 PF05598 Transposase domain (DUF772) IXO608_021135 PF00128 Alpha amylase, catalytic domain IXO608_021135 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IXO608_021200 PF00085 Thioredoxin IXO608_021210 PF08264 Anticodon-binding domain of tRNA IXO608_021210 PF00133 tRNA synthetases class I (I, L, M and V) IXO608_021210 PF13603 Leucyl-tRNA synthetase, Domain 2 IXO608_021225 PF01467 Cytidylyltransferase-like IXO608_021250 PF02590 Predicted SPOUT methyltransferase IXO608_021275 PF04402 Protein of unknown function (DUF541) IXO608_021280 PF02545 Maf-like protein IXO608_021285 PF10150 Ribonuclease E/G family IXO608_021285 PF00575 S1 RNA binding domain IXO608_021290 PF13502 AsmA-like C-terminal region IXO608_021290 PF13116 Protein of unknown function IXO608_021300 PF01523 Putative modulator of DNA gyrase IXO608_021305 PF04751 Protein of unknown function (DUF615) IXO608_021310 PF01523 Putative modulator of DNA gyrase IXO608_021335 PF00348 Polyprenyl synthetase IXO608_021340 PF02609 Exonuclease VII small subunit IXO608_021345 PF11734 TilS substrate C-terminal domain IXO608_021345 PF01171 PP-loop family IXO608_021345 PF09179 TilS substrate binding domain IXO608_021350 PF00245 Alkaline phosphatase IXO608_021355 PF00375 Sodium:dicarboxylate symporter family IXO608_021370 PF00877 NlpC/P60 family IXO608_021375 PF00877 NlpC/P60 family IXO608_021380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IXO608_021385 PF04235 Protein of unknown function (DUF418) IXO608_021390 PF01266 FAD dependent oxidoreductase IXO608_021430 PF10609 NUBPL iron-transfer P-loop NTPase IXO608_021435 PF00692 dUTPase IXO608_021455 PF01738 Dienelactone hydrolase family IXO608_021460 PF04055 Radical SAM superfamily IXO608_021460 PF18693 TRAM domain IXO608_021460 PF00919 Uncharacterized protein family UPF0004 IXO608_021465 PF01272 Transcription elongation factor, GreA/GreB, C-term IXO608_021465 PF03449 Transcription elongation factor, N-terminal IXO608_021475 PF05598 Transposase domain (DUF772) IXO608_021475 PF01609 Transposase DDE domain IXO608_021500 PF02666 Phosphatidylserine decarboxylase IXO608_021505 PF02630 SCO1/SenC IXO608_021510 PF05175 Methyltransferase small domain IXO608_021515 PF01264 Chorismate synthase IXO608_021520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IXO608_021520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IXO608_021525 PF01118 Semialdehyde dehydrogenase, NAD binding domain IXO608_021525 PF02774 Semialdehyde dehydrogenase, dimerisation domain IXO608_021545 PF01416 tRNA pseudouridine synthase IXO608_021550 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IXO608_021555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_021555 PF03466 LysR substrate binding domain IXO608_021560 PF00291 Pyridoxal-phosphate dependent enzyme IXO608_021570 PF00290 Tryptophan synthase alpha chain IXO608_021575 PF01039 Carboxyl transferase domain IXO608_021575 PF17848 Acetyl-coA carboxylase zinc finger domain IXO608_021580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IXO608_021580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IXO608_021580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IXO608_021580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IXO608_021595 PF03707 Bacterial signalling protein N terminal repeat IXO608_021595 PF00990 Diguanylate cyclase, GGDEF domain IXO608_021595 PF00563 EAL domain IXO608_021630 PF00121 Triosephosphate isomerase IXO608_021645 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IXO608_021650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IXO608_021655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IXO608_021660 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IXO608_021670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IXO608_021670 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IXO608_021670 PF10531 SLBB domain IXO608_021675 PF00384 Molybdopterin oxidoreductase IXO608_021675 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IXO608_021675 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IXO608_021680 PF00146 NADH dehydrogenase IXO608_021685 PF12838 4Fe-4S dicluster domain IXO608_021690 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IXO608_021695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IXO608_021700 PF00361 Proton-conducting membrane transporter IXO608_021700 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IXO608_021705 PF00361 Proton-conducting membrane transporter IXO608_021705 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IXO608_021710 PF00361 Proton-conducting membrane transporter IXO608_021720 PF17384 RimP C-terminal SH3 domain IXO608_021720 PF02576 RimP N-terminal domain IXO608_021725 PF00575 S1 RNA binding domain IXO608_021725 PF08529 NusA N-terminal domain IXO608_021725 PF13184 NusA-like KH domain IXO608_021730 PF04760 Translation initiation factor IF-2, N-terminal region IXO608_021730 PF00009 Elongation factor Tu GTP binding domain IXO608_021730 PF11987 Translation-initiation factor 2 IXO608_021730 PF08364 Bacterial translation initiation factor IF-2 associated region IXO608_021735 PF02033 Ribosome-binding factor A IXO608_021740 PF09157 Pseudouridine synthase II TruB, C-terminal IXO608_021740 PF16198 tRNA pseudouridylate synthase B C-terminal domain IXO608_021740 PF01509 TruB family pseudouridylate synthase (N terminal domain) IXO608_021745 PF00312 Ribosomal protein S15 IXO608_021750 PF00013 KH domain IXO608_021750 PF01138 3' exoribonuclease family, domain 1 IXO608_021750 PF03725 3' exoribonuclease family, domain 2 IXO608_021750 PF00575 S1 RNA binding domain IXO608_021750 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IXO608_021760 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IXO608_021760 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IXO608_021770 PF00731 AIR carboxylase IXO608_021775 PF02222 ATP-grasp domain IXO608_021775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IXO608_021780 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IXO608_021780 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IXO608_021785 PF00462 Glutaredoxin IXO608_021795 PF01914 MarC family integral membrane protein IXO608_021805 PF00593 TonB dependent receptor IXO608_021810 PF11892 Domain of unknown function (DUF3412) IXO608_021810 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IXO608_021810 PF03641 Possible lysine decarboxylase IXO608_021815 PF12019 Type II transport protein GspH IXO608_021815 PF07963 Prokaryotic N-terminal methylation motif IXO608_021835 PF05567 Neisseria PilC beta-propeller domain IXO608_021840 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor IXO608_021840 PF07963 Prokaryotic N-terminal methylation motif IXO608_021850 PF00114 Pilin (bacterial filament) IXO608_021850 PF07963 Prokaryotic N-terminal methylation motif IXO608_021855 PF04851 Type III restriction enzyme, res subunit IXO608_021855 PF17757 UvrB interaction domain IXO608_021855 PF12344 Ultra-violet resistance protein B IXO608_021855 PF02151 UvrB/uvrC motif IXO608_021855 PF00271 Helicase conserved C-terminal domain IXO608_021885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IXO608_021885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IXO608_021885 PF02824 TGS domain IXO608_021885 PF03129 Anticodon binding domain IXO608_021890 PF05198 Translation initiation factor IF-3, N-terminal domain IXO608_021890 PF00707 Translation initiation factor IF-3, C-terminal domain IXO608_021895 PF01632 Ribosomal protein L35 IXO608_021900 PF00453 Ribosomal protein L20 IXO608_021905 PF01409 tRNA synthetases class II core domain (F) IXO608_021905 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IXO608_021910 PF03484 tRNA synthetase B5 domain IXO608_021910 PF03147 Ferredoxin-fold anticodon binding domain IXO608_021910 PF01588 Putative tRNA binding domain IXO608_021910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IXO608_021910 PF03483 B3/4 domain IXO608_021915 PF00216 Bacterial DNA-binding protein IXO608_021920 PF13411 MerR HTH family regulatory protein IXO608_021940 PF02397 Bacterial sugar transferase IXO608_021960 PF13439 Glycosyltransferase Family 4 IXO608_021960 PF00534 Glycosyl transferases group 1 IXO608_021970 PF14667 Polysaccharide biosynthesis C-terminal domain IXO608_021985 PF03808 Glycosyl transferase WecB/TagA/CpsF family IXO608_022015 PF08212 Lipocalin-like domain IXO608_022105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_022105 PF00072 Response regulator receiver domain IXO608_022105 PF13426 PAS domain IXO608_022110 PF04362 Bacterial Fe(2+) trafficking IXO608_022115 PF00633 Helix-hairpin-helix motif IXO608_022115 PF00730 HhH-GPD superfamily base excision DNA repair protein IXO608_022115 PF14815 NUDIX domain IXO608_022125 PF00448 SRP54-type protein, GTPase domain IXO608_022125 PF02881 SRP54-type protein, helical bundle domain IXO608_022135 PF05544 Proline racemase IXO608_022140 PF01266 FAD dependent oxidoreductase IXO608_022150 PF07992 Pyridine nucleotide-disulphide oxidoreductase IXO608_022150 PF04324 BFD-like [2Fe-2S] binding domain IXO608_022155 PF00701 Dihydrodipicolinate synthetase family IXO608_022160 PF00171 Aldehyde dehydrogenase family IXO608_022165 PF00557 Metallopeptidase family M24 IXO608_022165 PF01321 Creatinase/Prolidase N-terminal domain IXO608_022180 PF13520 Amino acid permease IXO608_022220 PF09286 Pro-kumamolisin, activation domain IXO608_022220 PF00082 Subtilase family IXO608_022235 PF07532 Bacterial Ig-like domain (group 4) IXO608_022240 PF04616 Glycosyl hydrolases family 43 IXO608_022255 PF00593 TonB dependent receptor IXO608_022255 PF07715 TonB-dependent Receptor Plug Domain IXO608_022260 PF00872 Transposase, Mutator family IXO608_022320 PF00994 Probable molybdopterin binding domain IXO608_022320 PF03453 MoeA N-terminal region (domain I and II) IXO608_022320 PF03454 MoeA C-terminal region (domain IV) IXO608_022325 PF12804 MobA-like NTP transferase domain IXO608_022350 PF14824 Sirohaem biosynthesis protein central IXO608_022350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IXO608_022350 PF10414 Sirohaem synthase dimerisation region IXO608_022360 PF03861 ANTAR domain IXO608_022360 PF00072 Response regulator receiver domain IXO608_022390 PF01609 Transposase DDE domain IXO608_022390 PF05598 Transposase domain (DUF772) IXO608_022395 PF05598 Transposase domain (DUF772) IXO608_022395 PF01609 Transposase DDE domain IXO608_022425 PF01648 4'-phosphopantetheinyl transferase superfamily IXO608_022425 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IXO608_022435 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IXO608_022435 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IXO608_022435 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IXO608_022445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IXO608_022455 PF05598 Transposase domain (DUF772) IXO608_022455 PF01609 Transposase DDE domain IXO608_022460 PF00581 Rhodanese-like domain IXO608_022460 PF17773 UPF0176 acylphosphatase like domain IXO608_022465 PF00196 Bacterial regulatory proteins, luxR family IXO608_022465 PF00072 Response regulator receiver domain IXO608_022475 PF10150 Ribonuclease E/G family IXO608_022475 PF12111 Polyribonucleotide phosphorylase C terminal IXO608_022475 PF00575 S1 RNA binding domain IXO608_022480 PF00849 RNA pseudouridylate synthase IXO608_022480 PF01479 S4 domain IXO608_022485 PF11737 Protein of unknown function (DUF3300) IXO608_022490 PF02535 ZIP Zinc transporter IXO608_022495 PF02535 ZIP Zinc transporter IXO608_022505 PF01329 Pterin 4 alpha carbinolamine dehydratase IXO608_022510 PF01106 NifU-like domain IXO608_022555 PF01609 Transposase DDE domain IXO608_022555 PF05598 Transposase domain (DUF772) IXO608_022570 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IXO608_022575 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IXO608_022580 PF05638 Type VI secretion system effector, Hcp IXO608_022585 PF07024 ImpE protein IXO608_022590 PF04965 Gene 25-like lysozyme IXO608_022595 PF05947 Type VI secretion system, TssF IXO608_022605 PF00004 ATPase family associated with various cellular activities (AAA) IXO608_022605 PF17871 AAA lid domain IXO608_022605 PF07724 AAA domain (Cdc48 subfamily) IXO608_022605 PF10431 C-terminal, D2-small domain, of ClpB protein IXO608_022630 PF06715 Gp5 C-terminal repeat (3 copies) IXO608_022630 PF04717 Type VI secretion system, phage-baseplate injector IXO608_022645 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IXO608_022655 PF06744 Type VI secretion protein IcmF C-terminal IXO608_022655 PF14331 ImcF-related N-terminal domain IXO608_022655 PF06761 Intracellular multiplication and human macrophage-killing IXO608_022670 PF00069 Protein kinase domain IXO608_022690 PF06812 ImpA, N-terminal, type VI secretion system IXO608_022695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IXO608_022695 PF03466 LysR substrate binding domain IXO608_022700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IXO608_022700 PF00512 His Kinase A (phospho-acceptor) domain IXO608_022705 PF03150 Di-haem cytochrome c peroxidase IXO608_022705 PF00034 Cytochrome c IXO608_022710 PF00072 Response regulator receiver domain IXO608_022710 PF00486 Transcriptional regulatory protein, C terminal IXO608_022755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IXO608_022755 PF00529 HlyD membrane-fusion protein of T1SS IXO608_022760 PF00873 AcrB/AcrD/AcrF family IXO608_022770 PF00873 AcrB/AcrD/AcrF family