locus-tag class description BRM78_00010 PF00468 Ribosomal protein L34 BRM78_00015 PF00825 Ribonuclease P BRM78_00020 PF14849 YidC periplasmic domain BRM78_00020 PF02096 60Kd inner membrane protein BRM78_00025 PF01522 Polysaccharide deacetylase BRM78_00030 PF01926 50S ribosome-binding GTPase BRM78_00030 PF12631 MnmE helical domain BRM78_00030 PF10396 GTP-binding protein TrmE N-terminus BRM78_00035 PF01569 PAP2 superfamily BRM78_00045 PF03009 Glycerophosphoryl diester phosphodiesterase family BRM78_00050 PF01694 Rhomboid family BRM78_00055 PF03741 Integral membrane protein TerC family BRM78_00065 PF17785 PUA-like domain BRM78_00065 PF10672 S-adenosylmethionine-dependent methyltransferase BRM78_00080 PF07690 Major Facilitator Superfamily BRM78_00085 PF02595 Glycerate kinase family BRM78_00190 PF00083 Sugar (and other) transporter BRM78_00215 PF01227 GTP cyclohydrolase I BRM78_00220 PF02463 RecF/RecN/SMC N terminal domain BRM78_00270 PF04389 Peptidase family M28 BRM78_00280 PF01551 Peptidase family M23 BRM78_00285 PF03572 Peptidase family S41 BRM78_00285 PF13180 PDZ domain BRM78_00295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM78_00295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM78_00310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BRM78_00320 PF04055 Radical SAM superfamily BRM78_00340 PF00255 Glutathione peroxidase BRM78_00350 PF02646 RmuC family BRM78_00360 PF13520 Amino acid permease BRM78_00375 PF13361 UvrD-like helicase C-terminal domain BRM78_00375 PF00580 UvrD/REP helicase N-terminal domain BRM78_00395 PF13091 PLD-like domain BRM78_00395 PF13396 Phospholipase_D-nuclease N-terminal BRM78_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_00400 PF03466 LysR substrate binding domain BRM78_00405 PF03737 Aldolase/RraA BRM78_00410 PF04303 PrpF protein BRM78_00430 PF04909 Amidohydrolase BRM78_00435 PF00471 Ribosomal protein L33 BRM78_00440 PF00830 Ribosomal L28 family BRM78_00455 PF02527 rRNA small subunit methyltransferase G BRM78_00460 PF09423 PhoD-like phosphatase BRM78_00460 PF16655 PhoD-like phosphatase, N-terminal domain BRM78_00465 PF09423 PhoD-like phosphatase BRM78_00465 PF16655 PhoD-like phosphatase, N-terminal domain BRM78_00470 PF01648 4'-phosphopantetheinyl transferase superfamily BRM78_00475 PF04226 Transglycosylase associated protein BRM78_00485 PF03372 Endonuclease/Exonuclease/phosphatase family BRM78_00500 PF00474 Sodium:solute symporter family BRM78_00505 PF04341 Protein of unknown function, DUF485 BRM78_00520 PF13193 AMP-binding enzyme C-terminal domain BRM78_00520 PF00501 AMP-binding enzyme BRM78_00520 PF16177 Acetyl-coenzyme A synthetase N-terminus BRM78_00525 PF00196 Bacterial regulatory proteins, luxR family BRM78_00525 PF00072 Response regulator receiver domain BRM78_00550 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRM78_00550 PF04616 Glycosyl hydrolases family 43 BRM78_00560 PF00248 Aldo/keto reductase family BRM78_00575 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRM78_00585 PF13378 Enolase C-terminal domain-like BRM78_00585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM78_00590 PF07308 Protein of unknown function (DUF1456) BRM78_00595 PF08482 ATP-dependent helicase C-terminal BRM78_00595 PF00271 Helicase conserved C-terminal domain BRM78_00595 PF04408 Helicase associated domain (HA2) BRM78_00595 PF00270 DEAD/DEAH box helicase BRM78_00610 PF00849 RNA pseudouridylate synthase BRM78_00620 PF00248 Aldo/keto reductase family BRM78_00625 PF00107 Zinc-binding dehydrogenase BRM78_00625 PF16884 N-terminal domain of oxidoreductase BRM78_00630 PF00248 Aldo/keto reductase family BRM78_00655 PF05598 Transposase domain (DUF772) BRM78_00655 PF01609 Transposase DDE domain BRM78_00670 PF01734 Patatin-like phospholipase BRM78_00680 PF00005 ABC transporter BRM78_00695 PF00571 CBS domain BRM78_00695 PF00005 ABC transporter BRM78_00700 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_00710 PF03781 Sulfatase-modifying factor enzyme 1 BRM78_00710 PF12867 DinB superfamily BRM78_00715 PF10017 Histidine-specific methyltransferase, SAM-dependent BRM78_00720 PF07804 HipA-like C-terminal domain BRM78_00720 PF13657 HipA N-terminal domain BRM78_00725 PF01381 Helix-turn-helix BRM78_00745 PF01883 Iron-sulfur cluster assembly protein BRM78_00745 PF10609 NUBPL iron-transfer P-loop NTPase BRM78_00760 PF13091 PLD-like domain BRM78_00765 PF03061 Thioesterase superfamily BRM78_00805 PF02673 Bacitracin resistance protein BacA BRM78_00810 PF03951 Glutamine synthetase, beta-Grasp domain BRM78_00810 PF00120 Glutamine synthetase, catalytic domain BRM78_00815 PF00543 Nitrogen regulatory protein P-II BRM78_00820 PF00909 Ammonium Transporter Family BRM78_00825 PF00989 PAS fold BRM78_00825 PF00512 His Kinase A (phospho-acceptor) domain BRM78_00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_00830 PF00158 Sigma-54 interaction domain BRM78_00830 PF02954 Bacterial regulatory protein, Fis family BRM78_00830 PF00072 Response regulator receiver domain BRM78_00835 PF00080 Copper/zinc superoxide dismutase (SODC) BRM78_00840 PF00080 Copper/zinc superoxide dismutase (SODC) BRM78_00880 PF17946 RecC C-terminal domain BRM78_00885 PF12705 PD-(D/E)XK nuclease superfamily BRM78_00885 PF00580 UvrD/REP helicase N-terminal domain BRM78_00885 PF13361 UvrD-like helicase C-terminal domain BRM78_00890 PF13538 UvrD-like helicase C-terminal domain BRM78_00895 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BRM78_00900 PF01381 Helix-turn-helix BRM78_00995 PF02566 OsmC-like protein BRM78_01000 PF01047 MarR family BRM78_01035 PF00440 Bacterial regulatory proteins, tetR family BRM78_01040 PF00970 Oxidoreductase FAD-binding domain BRM78_01040 PF00111 2Fe-2S iron-sulfur cluster binding domain BRM78_01040 PF00175 Oxidoreductase NAD-binding domain BRM78_01045 PF00487 Fatty acid desaturase BRM78_01050 PF12792 CSS motif domain associated with EAL BRM78_01050 PF00563 EAL domain BRM78_01090 PF04616 Glycosyl hydrolases family 43 BRM78_01120 PF00331 Glycosyl hydrolase family 10 BRM78_01120 PF03422 Carbohydrate binding module (family 6) BRM78_01120 PF00553 Cellulose binding domain BRM78_01125 PF02614 Glucuronate isomerase BRM78_01145 PF08125 Mannitol dehydrogenase C-terminal domain BRM78_01145 PF01232 Mannitol dehydrogenase Rossmann domain BRM78_01150 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM78_01150 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM78_01150 PF07691 PA14 domain BRM78_01150 PF14310 Fibronectin type III-like domain BRM78_01155 PF04616 Glycosyl hydrolases family 43 BRM78_01155 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRM78_01160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM78_01160 PF13378 Enolase C-terminal domain-like BRM78_01170 PF07477 Glycosyl hydrolase family 67 C-terminus BRM78_01170 PF07488 Glycosyl hydrolase family 67 middle domain BRM78_01170 PF03648 Glycosyl hydrolase family 67 N-terminus BRM78_01175 PF00356 Bacterial regulatory proteins, lacI family BRM78_01190 PF01171 PP-loop family BRM78_01195 PF04381 Putative exonuclease, RdgC BRM78_01220 PF12697 Alpha/beta hydrolase family BRM78_01225 PF00762 Ferrochelatase BRM78_01235 PF02416 mttA/Hcf106 family BRM78_01240 PF02416 mttA/Hcf106 family BRM78_01245 PF00902 Sec-independent protein translocase protein (TatC) BRM78_01255 PF00958 GMP synthase C terminal domain BRM78_01255 PF00117 Glutamine amidotransferase class-I BRM78_01280 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM78_01280 PF00437 Type II/IV secretion system protein BRM78_01285 PF02091 Glycyl-tRNA synthetase alpha subunit BRM78_01290 PF05746 DALR anticodon binding domain BRM78_01290 PF02092 Glycyl-tRNA synthetase beta subunit BRM78_01295 PF13181 Tetratricopeptide repeat BRM78_01300 PF00593 TonB dependent receptor BRM78_01300 PF07715 TonB-dependent Receptor Plug Domain BRM78_01315 PF03969 AFG1-like ATPase BRM78_01335 PF07683 Cobalamin synthesis protein cobW C-terminal domain BRM78_01335 PF02492 CobW/HypB/UreG, nucleotide-binding domain BRM78_01390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM78_01390 PF02770 Acyl-CoA dehydrogenase, middle domain BRM78_01390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM78_01395 PF01039 Carboxyl transferase domain BRM78_01400 PF02785 Biotin carboxylase C-terminal domain BRM78_01400 PF00289 Biotin carboxylase, N-terminal domain BRM78_01400 PF00364 Biotin-requiring enzyme BRM78_01400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM78_01405 PF00326 Prolyl oligopeptidase family BRM78_01455 PF09349 OHCU decarboxylase BRM78_01455 PF01014 Uricase BRM78_01470 PF00266 Aminotransferase class-V BRM78_01520 PF01026 TatD related DNase BRM78_01540 PF03466 LysR substrate binding domain BRM78_01540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_01545 PF07690 Major Facilitator Superfamily BRM78_01555 PF02146 Sir2 family BRM78_01560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM78_01565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRM78_01565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM78_01585 PF00551 Formyl transferase BRM78_01590 PF00072 Response regulator receiver domain BRM78_01590 PF00486 Transcriptional regulatory protein, C terminal BRM78_01610 PF02677 Epoxyqueuosine reductase QueH BRM78_01615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_01615 PF03466 LysR substrate binding domain BRM78_01620 PF03358 NADPH-dependent FMN reductase BRM78_01630 PF01717 Cobalamin-independent synthase, Catalytic domain BRM78_01630 PF08267 Cobalamin-independent synthase, N-terminal domain BRM78_01635 PF03812 2-keto-3-deoxygluconate permease BRM78_01645 PF05368 NmrA-like family BRM78_01650 PF01638 HxlR-like helix-turn-helix BRM78_01705 PF04820 Tryptophan halogenase BRM78_01710 PF00550 Phosphopantetheine attachment site BRM78_01720 PF01553 Acyltransferase BRM78_01725 PF07977 FabA-like domain BRM78_01760 PF04357 TamB, inner membrane protein subunit of TAM complex BRM78_01765 PF17243 POTRA domain TamA domain 1 BRM78_01765 PF01103 Surface antigen BRM78_01780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM78_01780 PF07498 Rho termination factor, N-terminal domain BRM78_01780 PF07497 Rho termination factor, RNA-binding domain BRM78_01785 PF00085 Thioredoxin BRM78_01790 PF00270 DEAD/DEAH box helicase BRM78_01790 PF00271 Helicase conserved C-terminal domain BRM78_01790 PF12300 ATP-dependent RNA helicase RhlB BRM78_01795 PF00005 ABC transporter BRM78_01800 PF18075 FtsX extracellular domain BRM78_01805 PF00072 Response regulator receiver domain BRM78_01810 PF03167 Uracil DNA glycosylase superfamily BRM78_01815 PF04542 Sigma-70 region 2 BRM78_01815 PF04545 Sigma-70, region 4 BRM78_01825 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_01845 PF00166 Chaperonin 10 Kd subunit BRM78_01850 PF00118 TCP-1/cpn60 chaperonin family BRM78_01860 PF00593 TonB dependent receptor BRM78_01860 PF07715 TonB-dependent Receptor Plug Domain BRM78_01875 PF00793 DAHP synthetase I family BRM78_01910 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM78_01920 PF03710 Glutamate-ammonia ligase adenylyltransferase BRM78_01920 PF08335 GlnD PII-uridylyltransferase BRM78_01925 PF02592 Putative vitamin uptake transporter BRM78_01950 PF00881 Nitroreductase family BRM78_01955 PF04264 YceI-like domain BRM78_01985 PF01527 Transposase BRM78_01990 PF13276 HTH-like domain BRM78_01990 PF13333 Integrase core domain BRM78_01990 PF00665 Integrase core domain BRM78_02005 PF03377 TAL effector repeat BRM78_02020 PF17831 Pyruvate dehydrogenase E1 component middle domain BRM78_02020 PF00456 Transketolase, thiamine diphosphate binding domain BRM78_02040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRM78_02040 PF01612 3'-5' exonuclease BRM78_02040 PF01367 5'-3' exonuclease, C-terminal SAM fold BRM78_02040 PF00476 DNA polymerase family A BRM78_02055 PF01218 Coproporphyrinogen III oxidase BRM78_02065 PF05598 Transposase domain (DUF772) BRM78_02065 PF01609 Transposase DDE domain BRM78_02085 PF13495 Phage integrase, N-terminal SAM-like domain BRM78_02085 PF00589 Phage integrase family BRM78_02090 PF00920 Dehydratase family BRM78_02095 PF03692 Putative zinc- or iron-chelating domain BRM78_02100 PF00132 Bacterial transferase hexapeptide (six repeats) BRM78_02125 PF07690 Major Facilitator Superfamily BRM78_02130 PF01966 HD domain BRM78_02130 PF11871 Domain of unknown function (DUF3391) BRM78_02145 PF05598 Transposase domain (DUF772) BRM78_02155 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BRM78_02160 PF00501 AMP-binding enzyme BRM78_02165 PF03692 Putative zinc- or iron-chelating domain BRM78_02170 PF00561 alpha/beta hydrolase fold BRM78_02180 PF01555 DNA methylase BRM78_02185 PF13784 Fic/DOC family N-terminal BRM78_02185 PF02661 Fic/DOC family BRM78_02190 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM78_02190 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM78_02205 PF00588 SpoU rRNA Methylase family BRM78_02210 PF07690 Major Facilitator Superfamily BRM78_02225 PF00072 Response regulator receiver domain BRM78_02225 PF00158 Sigma-54 interaction domain BRM78_02225 PF02954 Bacterial regulatory protein, Fis family BRM78_02230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_02230 PF00512 His Kinase A (phospho-acceptor) domain BRM78_02235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRM78_02235 PF00205 Thiamine pyrophosphate enzyme, central domain BRM78_02235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRM78_02245 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BRM78_02245 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BRM78_02250 PF02556 Preprotein translocase subunit SecB BRM78_02255 PF00581 Rhodanese-like domain BRM78_02300 PF07063 Domain of unknown function (DUF1338) BRM78_02310 PF00873 AcrB/AcrD/AcrF family BRM78_02315 PF00873 AcrB/AcrD/AcrF family BRM78_02320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_02325 PF07687 Peptidase dimerisation domain BRM78_02325 PF01546 Peptidase family M20/M25/M40 BRM78_02335 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BRM78_02335 PF14489 QueF-like protein BRM78_02350 PF00872 Transposase, Mutator family BRM78_02365 PF05598 Transposase domain (DUF772) BRM78_02365 PF01609 Transposase DDE domain BRM78_02395 PF05598 Transposase domain (DUF772) BRM78_02405 PF03971 Monomeric isocitrate dehydrogenase BRM78_02430 PF00117 Glutamine amidotransferase class-I BRM78_02445 PF00591 Glycosyl transferase family, a/b domain BRM78_02445 PF02885 Glycosyl transferase family, helical bundle domain BRM78_02450 PF00218 Indole-3-glycerol phosphate synthase BRM78_02460 PF00325 Bacterial regulatory proteins, crp family BRM78_02460 PF00027 Cyclic nucleotide-binding domain BRM78_02465 PF02675 S-adenosylmethionine decarboxylase BRM78_02470 PF00893 Small Multidrug Resistance protein BRM78_02475 PF03232 Ubiquinone biosynthesis protein COQ7 BRM78_02480 PF00572 Ribosomal protein L13 BRM78_02485 PF00380 Ribosomal protein S9/S16 BRM78_02500 PF00293 NUDIX domain BRM78_02510 PF00210 Ferritin-like domain BRM78_02525 PF00171 Aldehyde dehydrogenase family BRM78_02525 PF14850 DNA-binding domain of Proline dehydrogenase BRM78_02525 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRM78_02525 PF01619 Proline dehydrogenase BRM78_02535 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BRM78_02535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRM78_02540 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRM78_02550 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BRM78_02555 PF00510 Cytochrome c oxidase subunit III BRM78_02580 PF01040 UbiA prenyltransferase family BRM78_02595 PF13593 SBF-like CPA transporter family (DUF4137) BRM78_02615 PF10410 DnaB-helicase binding domain of primase BRM78_02615 PF08278 DNA primase DnaG DnaB-binding BRM78_02615 PF08275 DNA primase catalytic core, N-terminal domain BRM78_02615 PF01807 CHC2 zinc finger BRM78_02620 PF03631 Virulence factor BrkB BRM78_02635 PF09424 Yqey-like protein BRM78_02640 PF01165 Ribosomal protein S21 BRM78_02645 PF00814 Glycoprotease family BRM78_02650 PF02152 Dihydroneopterin aldolase BRM78_02655 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM78_02655 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM78_02655 PF14310 Fibronectin type III-like domain BRM78_02690 PF07995 Glucose / Sorbosone dehydrogenase BRM78_02695 PF05360 yiaA/B two helix domain BRM78_02730 PF13520 Amino acid permease BRM78_02770 PF13378 Enolase C-terminal domain-like BRM78_02770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM78_02780 PF01510 N-acetylmuramoyl-L-alanine amidase BRM78_02785 PF01427 D-ala-D-ala dipeptidase BRM78_02820 PF01609 Transposase DDE domain BRM78_02820 PF05598 Transposase domain (DUF772) BRM78_02875 PF00108 Thiolase, N-terminal domain BRM78_02875 PF02803 Thiolase, C-terminal domain BRM78_02910 PF00676 Dehydrogenase E1 component BRM78_02920 PF03301 Tryptophan 2,3-dioxygenase BRM78_02925 PF00854 POT family BRM78_02935 PF01047 MarR family BRM78_02940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM78_02945 PF04209 homogentisate 1,2-dioxygenase BRM78_02955 PF03334 Na+/H+ antiporter subunit BRM78_02960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BRM78_02970 PF00361 Proton-conducting membrane transporter BRM78_02975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRM78_02980 PF13244 Domain of unknown function (DUF4040) BRM78_02980 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BRM78_02980 PF00361 Proton-conducting membrane transporter BRM78_02980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM78_03030 PF01259 SAICAR synthetase BRM78_03035 PF00226 DnaJ domain BRM78_03035 PF05099 Tellurite resistance protein TerB BRM78_03040 PF00834 Ribulose-phosphate 3 epimerase family BRM78_03045 PF00583 Acetyltransferase (GNAT) family BRM78_03050 PF00781 Diacylglycerol kinase catalytic domain BRM78_03055 PF00425 chorismate binding enzyme BRM78_03055 PF04715 Anthranilate synthase component I, N terminal region BRM78_03075 PF00106 short chain dehydrogenase BRM78_03115 PF07759 Protein of unknown function (DUF1615) BRM78_03135 PF00892 EamA-like transporter family BRM78_03140 PF03330 Lytic transglycolase BRM78_03145 PF00041 Fibronectin type III domain BRM78_03145 PF01341 Glycosyl hydrolases family 6 BRM78_03145 PF00553 Cellulose binding domain BRM78_03155 PF00324 Amino acid permease BRM78_03165 PF01544 CorA-like Mg2+ transporter protein BRM78_03185 PF01204 Trehalase BRM78_03225 PF03707 Bacterial signalling protein N terminal repeat BRM78_03225 PF00990 Diguanylate cyclase, GGDEF domain BRM78_03225 PF00563 EAL domain BRM78_03240 PF00150 Cellulase (glycosyl hydrolase family 5) BRM78_03240 PF00553 Cellulose binding domain BRM78_03245 PF01740 STAS domain BRM78_03245 PF00916 Sulfate permease family BRM78_03280 PF13632 Glycosyl transferase family group 2 BRM78_03290 PF07694 5TMR of 5TMR-LYT BRM78_03290 PF06580 Histidine kinase BRM78_03295 PF04397 LytTr DNA-binding domain BRM78_03295 PF00072 Response regulator receiver domain BRM78_03300 PF03900 Porphobilinogen deaminase, C-terminal domain BRM78_03300 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BRM78_03325 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRM78_03325 PF00326 Prolyl oligopeptidase family BRM78_03340 PF00155 Aminotransferase class I and II BRM78_03345 PF00326 Prolyl oligopeptidase family BRM78_03345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRM78_03360 PF01678 Diaminopimelate epimerase BRM78_03370 PF00589 Phage integrase family BRM78_03370 PF02899 Phage integrase, N-terminal SAM-like domain BRM78_03380 PF00227 Proteasome subunit BRM78_03385 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_03385 PF07724 AAA domain (Cdc48 subfamily) BRM78_03385 PF10431 C-terminal, D2-small domain, of ClpB protein BRM78_03400 PF01433 Peptidase family M1 domain BRM78_03400 PF11838 ERAP1-like C-terminal domain BRM78_03405 PF17152 Periplasmic sensor domain BRM78_03405 PF00990 Diguanylate cyclase, GGDEF domain BRM78_03410 PF01209 ubiE/COQ5 methyltransferase family BRM78_03420 PF13533 Biotin-lipoyl like BRM78_03430 PF13673 Acetyltransferase (GNAT) domain BRM78_03450 PF00294 pfkB family carbohydrate kinase BRM78_03460 PF04085 rod shape-determining protein MreC BRM78_03470 PF00905 Penicillin binding protein transpeptidase domain BRM78_03470 PF03717 Penicillin-binding Protein dimerisation domain BRM78_03475 PF01098 Cell cycle protein BRM78_03520 PF01471 Putative peptidoglycan binding domain BRM78_03520 PF01476 LysM domain BRM78_03520 PF01510 N-acetylmuramoyl-L-alanine amidase BRM78_03535 PF13406 Transglycosylase SLT domain BRM78_03540 PF05036 Sporulation related domain BRM78_03540 PF03330 Lytic transglycolase BRM78_03550 PF00768 D-alanyl-D-alanine carboxypeptidase BRM78_03550 PF07943 Penicillin-binding protein 5, C-terminal domain BRM78_03565 PF04359 Protein of unknown function (DUF493) BRM78_03570 PF03099 Biotin/lipoate A/B protein ligase family BRM78_03575 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BRM78_03575 PF04055 Radical SAM superfamily BRM78_03580 PF07669 Eco57I restriction-modification methylase BRM78_03580 PF12950 TaqI-like C-terminal specificity domain BRM78_03590 PF00595 PDZ domain BRM78_03590 PF03572 Peptidase family S41 BRM78_03590 PF17804 Tail specific protease N-terminal domain BRM78_03590 PF11818 C-terminal domain of tail specific protease (DUF3340) BRM78_03600 PF01467 Cytidylyltransferase-like BRM78_03600 PF00293 NUDIX domain BRM78_03635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM78_03635 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BRM78_03640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRM78_03640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM78_03645 PF04972 BON domain BRM78_03650 PF01590 GAF domain BRM78_03650 PF00512 His Kinase A (phospho-acceptor) domain BRM78_03650 PF08446 PAS fold BRM78_03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_03650 PF00360 Phytochrome region BRM78_03655 PF00072 Response regulator receiver domain BRM78_03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_03660 PF00512 His Kinase A (phospho-acceptor) domain BRM78_03665 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRM78_03715 PF02837 Glycosyl hydrolases family 2, sugar binding domain BRM78_03715 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BRM78_03715 PF00703 Glycosyl hydrolases family 2 BRM78_03715 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BRM78_03715 PF16355 Domain of unknown function (DUF4982) BRM78_03735 PF07690 Major Facilitator Superfamily BRM78_03740 PF00356 Bacterial regulatory proteins, lacI family BRM78_03745 PF01380 SIS domain BRM78_03750 PF01979 Amidohydrolase family BRM78_03760 PF00535 Glycosyl transferase family 2 BRM78_03765 PF01522 Polysaccharide deacetylase BRM78_03765 PF14883 Hypothetical glycosyl hydrolase family 13 BRM78_03815 PF05598 Transposase domain (DUF772) BRM78_03815 PF01609 Transposase DDE domain BRM78_03830 PF12627 Probable RNA and SrmB- binding site of polymerase A BRM78_03830 PF01743 Poly A polymerase head domain BRM78_03830 PF01966 HD domain BRM78_03860 PF01527 Transposase BRM78_03870 PF01609 Transposase DDE domain BRM78_03870 PF05598 Transposase domain (DUF772) BRM78_03885 PF00291 Pyridoxal-phosphate dependent enzyme BRM78_03885 PF13291 ACT domain BRM78_03890 PF01609 Transposase DDE domain BRM78_03890 PF05598 Transposase domain (DUF772) BRM78_03920 PF00034 Cytochrome c BRM78_03925 PF01926 50S ribosome-binding GTPase BRM78_03940 PF04107 Glutamate-cysteine ligase family 2(GCS2) BRM78_03945 PF00512 His Kinase A (phospho-acceptor) domain BRM78_03945 PF00672 HAMP domain BRM78_03945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_03985 PF16527 Two-component sensor protein CpxA, periplasmic domain BRM78_03985 PF00672 HAMP domain BRM78_03985 PF00512 His Kinase A (phospho-acceptor) domain BRM78_03990 PF00486 Transcriptional regulatory protein, C terminal BRM78_03990 PF00072 Response regulator receiver domain BRM78_04000 PF02583 Metal-sensitive transcriptional repressor BRM78_04005 PF08240 Alcohol dehydrogenase GroES-like domain BRM78_04005 PF00107 Zinc-binding dehydrogenase BRM78_04015 PF00756 Putative esterase BRM78_04035 PF12848 ABC transporter BRM78_04035 PF00005 ABC transporter BRM78_04055 PF00464 Serine hydroxymethyltransferase BRM78_04065 PF03477 ATP cone domain BRM78_04075 PF01872 RibD C-terminal domain BRM78_04075 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BRM78_04085 PF00677 Lumazine binding domain BRM78_04090 PF00925 GTP cyclohydrolase II BRM78_04090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BRM78_04095 PF00885 6,7-dimethyl-8-ribityllumazine synthase BRM78_04100 PF01029 NusB family BRM78_04105 PF00586 AIR synthase related protein, N-terminal domain BRM78_04105 PF02769 AIR synthase related protein, C-terminal domain BRM78_04130 PF03814 Potassium-transporting ATPase A subunit BRM78_04140 PF02669 K+-transporting ATPase, c chain BRM78_04145 PF13492 GAF domain BRM78_04145 PF13493 Domain of unknown function (DUF4118) BRM78_04145 PF02702 Osmosensitive K+ channel His kinase sensor domain BRM78_04145 PF00512 His Kinase A (phospho-acceptor) domain BRM78_04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_04150 PF00486 Transcriptional regulatory protein, C terminal BRM78_04150 PF00072 Response regulator receiver domain BRM78_04155 PF02913 FAD linked oxidases, C-terminal domain BRM78_04155 PF01565 FAD binding domain BRM78_04160 PF04307 LexA-binding, inner membrane-associated putative hydrolase BRM78_04165 PF02021 Uncharacterised protein family UPF0102 BRM78_04175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM78_04195 PF02381 MraZ protein, putative antitoxin-like BRM78_04200 PF01795 MraW methylase family BRM78_04205 PF04999 Cell division protein FtsL BRM78_04210 PF03717 Penicillin-binding Protein dimerisation domain BRM78_04210 PF00905 Penicillin binding protein transpeptidase domain BRM78_04215 PF08245 Mur ligase middle domain BRM78_04215 PF02875 Mur ligase family, glutamate ligase domain BRM78_04215 PF01225 Mur ligase family, catalytic domain BRM78_04220 PF02875 Mur ligase family, glutamate ligase domain BRM78_04220 PF01225 Mur ligase family, catalytic domain BRM78_04220 PF08245 Mur ligase middle domain BRM78_04225 PF00953 Glycosyl transferase family 4 BRM78_04230 PF01098 Cell cycle protein BRM78_04235 PF03033 Glycosyltransferase family 28 N-terminal domain BRM78_04235 PF04101 Glycosyltransferase family 28 C-terminal domain BRM78_04240 PF01225 Mur ligase family, catalytic domain BRM78_04240 PF02875 Mur ligase family, glutamate ligase domain BRM78_04240 PF08245 Mur ligase middle domain BRM78_04245 PF07478 D-ala D-ala ligase C-terminus BRM78_04245 PF01820 D-ala D-ala ligase N-terminus BRM78_04250 PF08478 POTRA domain, FtsQ-type BRM78_04250 PF03799 Cell division protein FtsQ BRM78_04255 PF02491 SHS2 domain inserted in FTSA BRM78_04260 PF00091 Tubulin/FtsZ family, GTPase domain BRM78_04260 PF12327 FtsZ family, C-terminal domain BRM78_04265 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BRM78_04275 PF01476 LysM domain BRM78_04275 PF01551 Peptidase family M23 BRM78_04280 PF07516 SecA Wing and Scaffold domain BRM78_04280 PF01043 SecA preprotein cross-linking domain BRM78_04280 PF07517 SecA DEAD-like domain BRM78_04280 PF02810 SEC-C motif BRM78_04290 PF00293 NUDIX domain BRM78_04305 PF02219 Methylenetetrahydrofolate reductase BRM78_04320 PF16197 Ketoacyl-synthetase C-terminal extension BRM78_04320 PF14765 Polyketide synthase dehydratase BRM78_04320 PF00550 Phosphopantetheine attachment site BRM78_04320 PF08659 KR domain BRM78_04320 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM78_04320 PF00698 Acyl transferase domain BRM78_04320 PF08240 Alcohol dehydrogenase GroES-like domain BRM78_04320 PF00107 Zinc-binding dehydrogenase BRM78_04320 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM78_04325 PF09286 Pro-kumamolisin, activation domain BRM78_04325 PF00082 Subtilase family BRM78_04340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM78_04375 PF13649 Methyltransferase domain BRM78_04380 PF05221 S-adenosyl-L-homocysteine hydrolase BRM78_04380 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BRM78_04390 PF00311 Phosphoenolpyruvate carboxylase BRM78_04425 PF00328 Histidine phosphatase superfamily (branch 2) BRM78_04435 PF02773 S-adenosylmethionine synthetase, C-terminal domain BRM78_04435 PF02772 S-adenosylmethionine synthetase, central domain BRM78_04435 PF00438 S-adenosylmethionine synthetase, N-terminal domain BRM78_04450 PF01207 Dihydrouridine synthase (Dus) BRM78_04470 PF00294 pfkB family carbohydrate kinase BRM78_04475 PF07662 Na+ dependent nucleoside transporter C-terminus BRM78_04475 PF01773 Na+ dependent nucleoside transporter N-terminus BRM78_04475 PF07670 Nucleoside recognition BRM78_04485 PF00248 Aldo/keto reductase family BRM78_04535 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BRM78_04545 PF00005 ABC transporter BRM78_04550 PF13472 GDSL-like Lipase/Acylhydrolase family BRM78_04555 PF00072 Response regulator receiver domain BRM78_04555 PF00486 Transcriptional regulatory protein, C terminal BRM78_04560 PF00512 His Kinase A (phospho-acceptor) domain BRM78_04560 PF08521 Two-component sensor kinase N-terminal BRM78_04560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_04585 PF01219 Prokaryotic diacylglycerol kinase BRM78_04605 PF01790 Prolipoprotein diacylglyceryl transferase BRM78_04610 PF00303 Thymidylate synthase BRM78_04620 PF00186 Dihydrofolate reductase BRM78_04625 PF00149 Calcineurin-like phosphoesterase BRM78_04630 PF04379 ApaG domain BRM78_04635 PF00398 Ribosomal RNA adenine dimethylase BRM78_04645 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BRM78_04650 PF00639 PPIC-type PPIASE domain BRM78_04650 PF09312 SurA N-terminal domain BRM78_04655 PF04453 LPS transport system D BRM78_04655 PF03968 OstA-like protein BRM78_04660 PF00850 Histone deacetylase domain BRM78_04665 PF01923 Cobalamin adenosyltransferase BRM78_04675 PF01494 FAD binding domain BRM78_04680 PF01494 FAD binding domain BRM78_04710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRM78_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_04720 PF03466 LysR substrate binding domain BRM78_04725 PF13193 AMP-binding enzyme C-terminal domain BRM78_04725 PF00501 AMP-binding enzyme BRM78_04730 PF00171 Aldehyde dehydrogenase family BRM78_04735 PF00378 Enoyl-CoA hydratase/isomerase BRM78_04755 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM78_04760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRM78_04760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM78_04765 PF18125 RlmM ferredoxin-like domain BRM78_04765 PF01728 FtsJ-like methyltransferase BRM78_04825 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM78_04825 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BRM78_04845 PF00990 Diguanylate cyclase, GGDEF domain BRM78_04845 PF00072 Response regulator receiver domain BRM78_04850 PF01627 Hpt domain BRM78_04850 PF00672 HAMP domain BRM78_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_04850 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM78_04850 PF00512 His Kinase A (phospho-acceptor) domain BRM78_04850 PF00072 Response regulator receiver domain BRM78_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_04895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM78_04900 PF08240 Alcohol dehydrogenase GroES-like domain BRM78_04900 PF00107 Zinc-binding dehydrogenase BRM78_04910 PF05736 OprF membrane domain BRM78_04910 PF00691 OmpA family BRM78_04920 PF00849 RNA pseudouridylate synthase BRM78_04930 PF00155 Aminotransferase class I and II BRM78_04940 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_04945 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_04950 PF12857 TOBE-like domain BRM78_04950 PF00005 ABC transporter BRM78_04950 PF17850 CysA C-terminal regulatory domain BRM78_04960 PF08240 Alcohol dehydrogenase GroES-like domain BRM78_04960 PF00107 Zinc-binding dehydrogenase BRM78_04980 PF10459 Peptidase S46 BRM78_04985 PF00300 Histidine phosphatase superfamily (branch 1) BRM78_04995 PF08245 Mur ligase middle domain BRM78_04995 PF02875 Mur ligase family, glutamate ligase domain BRM78_05010 PF00156 Phosphoribosyl transferase domain BRM78_05015 PF04305 Protein of unknown function (DUF455) BRM78_05035 PF00149 Calcineurin-like phosphoesterase BRM78_05040 PF01569 PAP2 superfamily BRM78_05045 PF13439 Glycosyltransferase Family 4 BRM78_05045 PF00534 Glycosyl transferases group 1 BRM78_05050 PF02541 Ppx/GppA phosphatase family BRM78_05055 PF13089 Polyphosphate kinase N-terminal domain BRM78_05055 PF13090 Polyphosphate kinase C-terminal domain 2 BRM78_05055 PF02503 Polyphosphate kinase middle domain BRM78_05055 PF17941 Polyphosphate kinase C-terminal domain 1 BRM78_05060 PF11808 Phosphate regulon sensor protein PhoR BRM78_05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_05060 PF00512 His Kinase A (phospho-acceptor) domain BRM78_05060 PF00989 PAS fold BRM78_05065 PF00072 Response regulator receiver domain BRM78_05065 PF00486 Transcriptional regulatory protein, C terminal BRM78_05070 PF01435 Peptidase family M48 BRM78_05070 PF13181 Tetratricopeptide repeat BRM78_05075 PF00462 Glutaredoxin BRM78_05110 PF01625 Peptide methionine sulfoxide reductase BRM78_05145 PF00923 Transaldolase/Fructose-6-phosphate aldolase BRM78_05150 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM78_05150 PF03449 Transcription elongation factor, N-terminal BRM78_05160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_05160 PF03466 LysR substrate binding domain BRM78_05165 PF13192 Thioredoxin domain BRM78_05165 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_05170 PF10417 C-terminal domain of 1-Cys peroxiredoxin BRM78_05170 PF00578 AhpC/TSA family BRM78_05175 PF17827 PrmC N-terminal domain BRM78_05175 PF05175 Methyltransferase small domain BRM78_05205 PF00561 alpha/beta hydrolase fold BRM78_05215 PF00293 NUDIX domain BRM78_05220 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRM78_05220 PF00476 DNA polymerase family A BRM78_05220 PF01612 3'-5' exonuclease BRM78_05220 PF01367 5'-3' exonuclease, C-terminal SAM fold BRM78_05235 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BRM78_05235 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BRM78_05235 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRM78_05255 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRM78_05260 PF02233 NAD(P) transhydrogenase beta subunit BRM78_05290 PF01063 Amino-transferase class IV BRM78_05300 PF04073 Aminoacyl-tRNA editing domain BRM78_05310 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain BRM78_05310 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BRM78_05325 PF03358 NADPH-dependent FMN reductase BRM78_05330 PF03631 Virulence factor BrkB BRM78_05335 PF08534 Redoxin BRM78_05340 PF00708 Acylphosphatase BRM78_05350 PF03976 Polyphosphate kinase 2 (PPK2) BRM78_05355 PF00994 Probable molybdopterin binding domain BRM78_05365 PF03462 PCRF domain BRM78_05365 PF00472 RF-1 domain BRM78_05370 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BRM78_05370 PF01488 Shikimate / quinate 5-dehydrogenase BRM78_05370 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BRM78_05380 PF03550 Outer membrane lipoprotein LolB BRM78_05385 PF00288 GHMP kinases N terminal domain BRM78_05385 PF08544 GHMP kinases C terminal BRM78_05395 PF14572 Phosphoribosyl synthetase-associated domain BRM78_05395 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BRM78_05400 PF14693 Ribosomal protein TL5, C-terminal domain BRM78_05400 PF01386 Ribosomal L25p family BRM78_05405 PF01195 Peptidyl-tRNA hydrolase BRM78_05410 PF01926 50S ribosome-binding GTPase BRM78_05410 PF06071 Protein of unknown function (DUF933) BRM78_05430 PF03143 Elongation factor Tu C-terminal domain BRM78_05430 PF00009 Elongation factor Tu GTP binding domain BRM78_05430 PF03144 Elongation factor Tu domain 2 BRM78_05440 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BRM78_05445 PF02357 Transcription termination factor nusG BRM78_05445 PF00467 KOW motif BRM78_05455 PF03946 Ribosomal protein L11, N-terminal domain BRM78_05455 PF00298 Ribosomal protein L11, RNA binding domain BRM78_05460 PF00687 Ribosomal protein L1p/L10e family BRM78_05465 PF00466 Ribosomal protein L10 BRM78_05470 PF16320 Ribosomal protein L7/L12 dimerisation domain BRM78_05470 PF00542 Ribosomal protein L7/L12 C-terminal domain BRM78_05475 PF04561 RNA polymerase Rpb2, domain 2 BRM78_05475 PF04563 RNA polymerase beta subunit BRM78_05475 PF00562 RNA polymerase Rpb2, domain 6 BRM78_05475 PF04565 RNA polymerase Rpb2, domain 3 BRM78_05475 PF10385 RNA polymerase beta subunit external 1 domain BRM78_05475 PF04560 RNA polymerase Rpb2, domain 7 BRM78_05480 PF05000 RNA polymerase Rpb1, domain 4 BRM78_05480 PF04998 RNA polymerase Rpb1, domain 5 BRM78_05480 PF04983 RNA polymerase Rpb1, domain 3 BRM78_05480 PF04997 RNA polymerase Rpb1, domain 1 BRM78_05480 PF00623 RNA polymerase Rpb1, domain 2 BRM78_05485 PF00164 Ribosomal protein S12/S23 BRM78_05490 PF00177 Ribosomal protein S7p/S5e BRM78_05495 PF14492 Elongation Factor G, domain II BRM78_05495 PF03764 Elongation factor G, domain IV BRM78_05495 PF00679 Elongation factor G C-terminus BRM78_05495 PF00009 Elongation factor Tu GTP binding domain BRM78_05495 PF03144 Elongation factor Tu domain 2 BRM78_05500 PF00009 Elongation factor Tu GTP binding domain BRM78_05500 PF03144 Elongation factor Tu domain 2 BRM78_05500 PF03143 Elongation factor Tu C-terminal domain BRM78_05510 PF00338 Ribosomal protein S10p/S20e BRM78_05515 PF00297 Ribosomal protein L3 BRM78_05520 PF00573 Ribosomal protein L4/L1 family BRM78_05525 PF00276 Ribosomal protein L23 BRM78_05530 PF03947 Ribosomal Proteins L2, C-terminal domain BRM78_05530 PF00181 Ribosomal Proteins L2, RNA binding domain BRM78_05535 PF00203 Ribosomal protein S19 BRM78_05540 PF00237 Ribosomal protein L22p/L17e BRM78_05545 PF07650 KH domain BRM78_05545 PF00189 Ribosomal protein S3, C-terminal domain BRM78_05550 PF00252 Ribosomal protein L16p/L10e BRM78_05555 PF00831 Ribosomal L29 protein BRM78_05560 PF00366 Ribosomal protein S17 BRM78_05565 PF00238 Ribosomal protein L14p/L23e BRM78_05570 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BRM78_05570 PF00467 KOW motif BRM78_05575 PF00281 Ribosomal protein L5 BRM78_05575 PF00673 ribosomal L5P family C-terminus BRM78_05580 PF00253 Ribosomal protein S14p/S29e BRM78_05585 PF00410 Ribosomal protein S8 BRM78_05590 PF00347 Ribosomal protein L6 BRM78_05595 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BRM78_05600 PF00333 Ribosomal protein S5, N-terminal domain BRM78_05600 PF03719 Ribosomal protein S5, C-terminal domain BRM78_05605 PF00327 Ribosomal protein L30p/L7e BRM78_05610 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BRM78_05615 PF00344 SecY translocase BRM78_05620 PF00416 Ribosomal protein S13/S18 BRM78_05625 PF00411 Ribosomal protein S11 BRM78_05630 PF01479 S4 domain BRM78_05630 PF00163 Ribosomal protein S4/S9 N-terminal domain BRM78_05635 PF01000 RNA polymerase Rpb3/RpoA insert domain BRM78_05635 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BRM78_05635 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BRM78_05640 PF01196 Ribosomal protein L17 BRM78_05695 PF02347 Glycine cleavage system P-protein BRM78_05715 PF03412 Peptidase C39 family BRM78_05715 PF00664 ABC transporter transmembrane region BRM78_05715 PF00005 ABC transporter BRM78_05735 PF08019 Phosphoethanolamine transferase EptA/EptB BRM78_05735 PF00884 Sulfatase BRM78_05745 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BRM78_05750 PF00486 Transcriptional regulatory protein, C terminal BRM78_05750 PF00072 Response regulator receiver domain BRM78_05755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_05755 PF08521 Two-component sensor kinase N-terminal BRM78_05755 PF00512 His Kinase A (phospho-acceptor) domain BRM78_05765 PF03776 Septum formation topological specificity factor MinE BRM78_05770 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BRM78_05775 PF05209 Septum formation inhibitor MinC, N-terminal domain BRM78_05775 PF03775 Septum formation inhibitor MinC, C-terminal domain BRM78_05790 PF07730 Histidine kinase BRM78_05795 PF00072 Response regulator receiver domain BRM78_05795 PF00196 Bacterial regulatory proteins, luxR family BRM78_05810 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM78_05835 PF02222 ATP-grasp domain BRM78_05840 PF01527 Transposase BRM78_05875 PF00691 OmpA family BRM78_05875 PF04972 BON domain BRM78_05890 PF04717 Type VI secretion system, phage-baseplate injector BRM78_05945 PF01609 Transposase DDE domain BRM78_05945 PF05598 Transposase domain (DUF772) BRM78_05955 PF04717 Type VI secretion system, phage-baseplate injector BRM78_05960 PF04717 Type VI secretion system, phage-baseplate injector BRM78_05995 PF04717 Type VI secretion system, phage-baseplate injector BRM78_05995 PF16671 Actin cross-linking domain BRM78_06050 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_06050 PF07724 AAA domain (Cdc48 subfamily) BRM78_06050 PF17871 AAA lid domain BRM78_06050 PF10431 C-terminal, D2-small domain, of ClpB protein BRM78_06060 PF16671 Actin cross-linking domain BRM78_06060 PF04717 Type VI secretion system, phage-baseplate injector BRM78_06160 PF01420 Type I restriction modification DNA specificity domain BRM78_06170 PF02384 N-6 DNA Methylase BRM78_06180 PF08463 EcoEI R protein C-terminal BRM78_06180 PF00271 Helicase conserved C-terminal domain BRM78_06180 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRM78_06180 PF04851 Type III restriction enzyme, res subunit BRM78_06200 PF02384 N-6 DNA Methylase BRM78_06205 PF08780 Nucleotidyltransferase substrate binding protein like BRM78_06215 PF01609 Transposase DDE domain BRM78_06215 PF05598 Transposase domain (DUF772) BRM78_06220 PF01420 Type I restriction modification DNA specificity domain BRM78_06225 PF01609 Transposase DDE domain BRM78_06225 PF05598 Transposase domain (DUF772) BRM78_06250 PF01609 Transposase DDE domain BRM78_06250 PF05598 Transposase domain (DUF772) BRM78_06255 PF18766 SWI2/SNF2 ATPase BRM78_06255 PF11867 Domain of unknown function (DUF3387) BRM78_06255 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRM78_06290 PF13456 Reverse transcriptase-like BRM78_06290 PF00300 Histidine phosphatase superfamily (branch 1) BRM78_06320 PF01726 LexA DNA binding domain BRM78_06320 PF00717 Peptidase S24-like BRM78_06340 PF02811 PHP domain BRM78_06340 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRM78_06340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRM78_06340 PF14579 Helix-hairpin-helix motif BRM78_06360 PF03169 OPT oligopeptide transporter protein BRM78_06365 PF01609 Transposase DDE domain BRM78_06365 PF05598 Transposase domain (DUF772) BRM78_06390 PF07676 WD40-like Beta Propeller Repeat BRM78_06390 PF00326 Prolyl oligopeptidase family BRM78_06390 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRM78_06420 PF02311 AraC-like ligand binding domain BRM78_06420 PF12833 Helix-turn-helix domain BRM78_06440 PF05598 Transposase domain (DUF772) BRM78_06440 PF01609 Transposase DDE domain BRM78_06465 PF18011 C-terminal domain found in long catalases BRM78_06465 PF00199 Catalase BRM78_06465 PF06628 Catalase-related immune-responsive BRM78_06500 PF00162 Phosphoglycerate kinase BRM78_06510 PF02887 Pyruvate kinase, alpha/beta domain BRM78_06510 PF00224 Pyruvate kinase, barrel domain BRM78_06515 PF00274 Fructose-bisphosphate aldolase class-I BRM78_06520 PF01661 Macro domain BRM78_06530 PF00291 Pyridoxal-phosphate dependent enzyme BRM78_06535 PF10414 Sirohaem synthase dimerisation region BRM78_06535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM78_06535 PF14824 Sirohaem biosynthesis protein central BRM78_06540 PF03466 LysR substrate binding domain BRM78_06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_06565 PF00512 His Kinase A (phospho-acceptor) domain BRM78_06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_06565 PF00072 Response regulator receiver domain BRM78_06565 PF01627 Hpt domain BRM78_06565 PF00672 HAMP domain BRM78_06585 PF01507 Phosphoadenosine phosphosulfate reductase family BRM78_06590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BRM78_06590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BRM78_06595 PF00258 Flavodoxin BRM78_06595 PF00175 Oxidoreductase NAD-binding domain BRM78_06595 PF00667 FAD binding domain BRM78_06600 PF01507 Phosphoadenosine phosphosulfate reductase family BRM78_06605 PF00009 Elongation factor Tu GTP binding domain BRM78_06615 PF00529 HlyD membrane-fusion protein of T1SS BRM78_06615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_06620 PF00873 AcrB/AcrD/AcrF family BRM78_06625 PF01433 Peptidase family M1 domain BRM78_06625 PF11838 ERAP1-like C-terminal domain BRM78_06655 PF00588 SpoU rRNA Methylase family BRM78_06655 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRM78_06680 PF01741 Large-conductance mechanosensitive channel, MscL BRM78_06685 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRM78_06710 PF03600 Citrate transporter BRM78_06710 PF02080 TrkA-C domain BRM78_06715 PF02390 Putative methyltransferase BRM78_06725 PF05690 Thiazole biosynthesis protein ThiG BRM78_06740 PF00657 GDSL-like Lipase/Acylhydrolase BRM78_06740 PF03797 Autotransporter beta-domain BRM78_06820 PF05598 Transposase domain (DUF772) BRM78_06820 PF01609 Transposase DDE domain BRM78_06825 PF05598 Transposase domain (DUF772) BRM78_06825 PF01609 Transposase DDE domain BRM78_06830 PF00128 Alpha amylase, catalytic domain BRM78_06830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM78_06905 PF00085 Thioredoxin BRM78_06915 PF13603 Leucyl-tRNA synthetase, Domain 2 BRM78_06915 PF00133 tRNA synthetases class I (I, L, M and V) BRM78_06915 PF08264 Anticodon-binding domain of tRNA BRM78_06935 PF01467 Cytidylyltransferase-like BRM78_06960 PF02590 Predicted SPOUT methyltransferase BRM78_06985 PF04402 Protein of unknown function (DUF541) BRM78_06990 PF02545 Maf-like protein BRM78_06995 PF10150 Ribonuclease E/G family BRM78_06995 PF00575 S1 RNA binding domain BRM78_07000 PF13116 Protein of unknown function BRM78_07000 PF13502 AsmA-like C-terminal region BRM78_07010 PF01523 Putative modulator of DNA gyrase BRM78_07015 PF04751 Protein of unknown function (DUF615) BRM78_07020 PF01523 Putative modulator of DNA gyrase BRM78_07045 PF00348 Polyprenyl synthetase BRM78_07050 PF02609 Exonuclease VII small subunit BRM78_07055 PF11734 TilS substrate C-terminal domain BRM78_07055 PF09179 TilS substrate binding domain BRM78_07055 PF01171 PP-loop family BRM78_07060 PF00245 Alkaline phosphatase BRM78_07065 PF00375 Sodium:dicarboxylate symporter family BRM78_07080 PF00877 NlpC/P60 family BRM78_07085 PF00877 NlpC/P60 family BRM78_07090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM78_07095 PF04235 Protein of unknown function (DUF418) BRM78_07100 PF01266 FAD dependent oxidoreductase BRM78_07145 PF10609 NUBPL iron-transfer P-loop NTPase BRM78_07150 PF00692 dUTPase BRM78_07170 PF01738 Dienelactone hydrolase family BRM78_07175 PF18693 TRAM domain BRM78_07175 PF00919 Uncharacterized protein family UPF0004 BRM78_07175 PF04055 Radical SAM superfamily BRM78_07180 PF03449 Transcription elongation factor, N-terminal BRM78_07180 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM78_07225 PF02666 Phosphatidylserine decarboxylase BRM78_07230 PF02630 SCO1/SenC BRM78_07235 PF05175 Methyltransferase small domain BRM78_07240 PF01264 Chorismate synthase BRM78_07245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM78_07245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM78_07250 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRM78_07250 PF02774 Semialdehyde dehydrogenase, dimerisation domain BRM78_07270 PF01416 tRNA pseudouridine synthase BRM78_07275 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BRM78_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_07280 PF03466 LysR substrate binding domain BRM78_07285 PF00291 Pyridoxal-phosphate dependent enzyme BRM78_07295 PF00290 Tryptophan synthase alpha chain BRM78_07300 PF01039 Carboxyl transferase domain BRM78_07300 PF17848 Acetyl-coA carboxylase zinc finger domain BRM78_07305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM78_07305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM78_07305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM78_07305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM78_07320 PF03707 Bacterial signalling protein N terminal repeat BRM78_07320 PF00990 Diguanylate cyclase, GGDEF domain BRM78_07320 PF00563 EAL domain BRM78_07355 PF00121 Triosephosphate isomerase BRM78_07370 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BRM78_07375 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BRM78_07380 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BRM78_07385 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BRM78_07395 PF10531 SLBB domain BRM78_07395 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BRM78_07395 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BRM78_07400 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BRM78_07400 PF00384 Molybdopterin oxidoreductase BRM78_07400 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BRM78_07405 PF00146 NADH dehydrogenase BRM78_07410 PF12838 4Fe-4S dicluster domain BRM78_07415 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BRM78_07420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRM78_07425 PF00361 Proton-conducting membrane transporter BRM78_07425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM78_07430 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BRM78_07430 PF00361 Proton-conducting membrane transporter BRM78_07435 PF00361 Proton-conducting membrane transporter BRM78_07445 PF02576 RimP N-terminal domain BRM78_07445 PF17384 RimP C-terminal SH3 domain BRM78_07450 PF13184 NusA-like KH domain BRM78_07450 PF08529 NusA N-terminal domain BRM78_07450 PF00575 S1 RNA binding domain BRM78_07455 PF04760 Translation initiation factor IF-2, N-terminal region BRM78_07455 PF08364 Bacterial translation initiation factor IF-2 associated region BRM78_07455 PF11987 Translation-initiation factor 2 BRM78_07455 PF00009 Elongation factor Tu GTP binding domain BRM78_07460 PF02033 Ribosome-binding factor A BRM78_07465 PF09157 Pseudouridine synthase II TruB, C-terminal BRM78_07465 PF01509 TruB family pseudouridylate synthase (N terminal domain) BRM78_07465 PF16198 tRNA pseudouridylate synthase B C-terminal domain BRM78_07470 PF00312 Ribosomal protein S15 BRM78_07475 PF00575 S1 RNA binding domain BRM78_07475 PF03725 3' exoribonuclease family, domain 2 BRM78_07475 PF01138 3' exoribonuclease family, domain 1 BRM78_07475 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BRM78_07475 PF00013 KH domain BRM78_07485 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BRM78_07485 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BRM78_07495 PF00731 AIR carboxylase BRM78_07500 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BRM78_07500 PF02222 ATP-grasp domain BRM78_07505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM78_07505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM78_07510 PF00462 Glutaredoxin BRM78_07520 PF01914 MarC family integral membrane protein BRM78_07530 PF00593 TonB dependent receptor BRM78_07535 PF03641 Possible lysine decarboxylase BRM78_07535 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BRM78_07535 PF11892 Domain of unknown function (DUF3412) BRM78_07540 PF07963 Prokaryotic N-terminal methylation motif BRM78_07540 PF12019 Type II transport protein GspH BRM78_07560 PF05567 Neisseria PilC beta-propeller domain BRM78_07565 PF07963 Prokaryotic N-terminal methylation motif BRM78_07565 PF00114 Pilin (bacterial filament) BRM78_07575 PF00114 Pilin (bacterial filament) BRM78_07575 PF07963 Prokaryotic N-terminal methylation motif BRM78_07580 PF17757 UvrB interaction domain BRM78_07580 PF02151 UvrB/uvrC motif BRM78_07580 PF04851 Type III restriction enzyme, res subunit BRM78_07580 PF12344 Ultra-violet resistance protein B BRM78_07580 PF00271 Helicase conserved C-terminal domain BRM78_07610 PF02824 TGS domain BRM78_07610 PF03129 Anticodon binding domain BRM78_07610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM78_07610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRM78_07615 PF05198 Translation initiation factor IF-3, N-terminal domain BRM78_07615 PF00707 Translation initiation factor IF-3, C-terminal domain BRM78_07620 PF01632 Ribosomal protein L35 BRM78_07625 PF00453 Ribosomal protein L20 BRM78_07630 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BRM78_07630 PF01409 tRNA synthetases class II core domain (F) BRM78_07635 PF03484 tRNA synthetase B5 domain BRM78_07635 PF03147 Ferredoxin-fold anticodon binding domain BRM78_07635 PF01588 Putative tRNA binding domain BRM78_07635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BRM78_07635 PF03483 B3/4 domain BRM78_07640 PF00216 Bacterial DNA-binding protein BRM78_07645 PF13411 MerR HTH family regulatory protein BRM78_07665 PF02397 Bacterial sugar transferase BRM78_07685 PF13439 Glycosyltransferase Family 4 BRM78_07685 PF00534 Glycosyl transferases group 1 BRM78_07695 PF14667 Polysaccharide biosynthesis C-terminal domain BRM78_07710 PF03808 Glycosyl transferase WecB/TagA/CpsF family BRM78_07740 PF08212 Lipocalin-like domain BRM78_07830 PF00072 Response regulator receiver domain BRM78_07830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_07830 PF13426 PAS domain BRM78_07835 PF04362 Bacterial Fe(2+) trafficking BRM78_07840 PF00633 Helix-hairpin-helix motif BRM78_07840 PF14815 NUDIX domain BRM78_07840 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM78_07855 PF00448 SRP54-type protein, GTPase domain BRM78_07855 PF02881 SRP54-type protein, helical bundle domain BRM78_07865 PF05544 Proline racemase BRM78_07870 PF01266 FAD dependent oxidoreductase BRM78_07880 PF04324 BFD-like [2Fe-2S] binding domain BRM78_07880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_07885 PF00701 Dihydrodipicolinate synthetase family BRM78_07890 PF00171 Aldehyde dehydrogenase family BRM78_07895 PF01321 Creatinase/Prolidase N-terminal domain BRM78_07895 PF00557 Metallopeptidase family M24 BRM78_07910 PF13520 Amino acid permease BRM78_07950 PF00082 Subtilase family BRM78_07950 PF09286 Pro-kumamolisin, activation domain BRM78_07960 PF07715 TonB-dependent Receptor Plug Domain BRM78_07960 PF00593 TonB dependent receptor BRM78_07965 PF07532 Bacterial Ig-like domain (group 4) BRM78_07970 PF04616 Glycosyl hydrolases family 43 BRM78_08060 PF03453 MoeA N-terminal region (domain I and II) BRM78_08060 PF03454 MoeA C-terminal region (domain IV) BRM78_08060 PF00994 Probable molybdopterin binding domain BRM78_08065 PF12804 MobA-like NTP transferase domain BRM78_08090 PF10414 Sirohaem synthase dimerisation region BRM78_08090 PF14824 Sirohaem biosynthesis protein central BRM78_08090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM78_08120 PF05598 Transposase domain (DUF772) BRM78_08120 PF01609 Transposase DDE domain BRM78_08125 PF01609 Transposase DDE domain BRM78_08125 PF05598 Transposase domain (DUF772) BRM78_08155 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BRM78_08155 PF01648 4'-phosphopantetheinyl transferase superfamily BRM78_08165 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRM78_08165 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRM78_08165 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRM78_08175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM78_08185 PF01609 Transposase DDE domain BRM78_08185 PF05598 Transposase domain (DUF772) BRM78_08195 PF00196 Bacterial regulatory proteins, luxR family BRM78_08195 PF00072 Response regulator receiver domain BRM78_08210 PF12111 Polyribonucleotide phosphorylase C terminal BRM78_08210 PF10150 Ribonuclease E/G family BRM78_08210 PF00575 S1 RNA binding domain BRM78_08215 PF00849 RNA pseudouridylate synthase BRM78_08215 PF01479 S4 domain BRM78_08220 PF11737 Protein of unknown function (DUF3300) BRM78_08225 PF02535 ZIP Zinc transporter BRM78_08230 PF02535 ZIP Zinc transporter BRM78_08240 PF01329 Pterin 4 alpha carbinolamine dehydratase BRM78_08245 PF01106 NifU-like domain BRM78_08290 PF05598 Transposase domain (DUF772) BRM78_08290 PF01609 Transposase DDE domain BRM78_08310 PF01609 Transposase DDE domain BRM78_08310 PF05598 Transposase domain (DUF772) BRM78_08340 PF05638 Type VI secretion system effector, Hcp BRM78_08365 PF10431 C-terminal, D2-small domain, of ClpB protein BRM78_08365 PF07724 AAA domain (Cdc48 subfamily) BRM78_08365 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_08365 PF17871 AAA lid domain BRM78_08390 PF04717 Type VI secretion system, phage-baseplate injector BRM78_08390 PF16671 Actin cross-linking domain BRM78_08430 PF00069 Protein kinase domain BRM78_08450 PF03466 LysR substrate binding domain BRM78_08450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_08455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_08455 PF00512 His Kinase A (phospho-acceptor) domain BRM78_08460 PF00034 Cytochrome c BRM78_08460 PF03150 Di-haem cytochrome c peroxidase BRM78_08465 PF00486 Transcriptional regulatory protein, C terminal BRM78_08465 PF00072 Response regulator receiver domain BRM78_08515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_08515 PF00529 HlyD membrane-fusion protein of T1SS BRM78_08520 PF00873 AcrB/AcrD/AcrF family BRM78_08540 PF03377 TAL effector repeat BRM78_08580 PF03377 TAL effector repeat BRM78_08590 PF03918 Cytochrome C biogenesis protein BRM78_08595 PF08534 Redoxin BRM78_08600 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRM78_08600 PF01578 Cytochrome C assembly protein BRM78_08605 PF03100 CcmE BRM78_08610 PF04995 Heme exporter protein D (CcmD) BRM78_08615 PF01578 Cytochrome C assembly protein BRM78_08620 PF00082 Subtilase family BRM78_08630 PF08281 Sigma-70, region 4 BRM78_08630 PF04542 Sigma-70 region 2 BRM78_08640 PF00034 Cytochrome c BRM78_08655 PF05523 WxcM-like, C-terminal BRM78_08675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRM78_08680 PF01943 Polysaccharide biosynthesis protein BRM78_08685 PF00535 Glycosyl transferase family 2 BRM78_08700 PF08241 Methyltransferase domain BRM78_08720 PF13579 Glycosyl transferase 4-like domain BRM78_08720 PF00534 Glycosyl transferases group 1 BRM78_08740 PF00005 ABC transporter BRM78_08745 PF00664 ABC transporter transmembrane region BRM78_08745 PF00005 ABC transporter BRM78_08755 PF07690 Major Facilitator Superfamily BRM78_08775 PF00296 Luciferase-like monooxygenase BRM78_08790 PF00571 CBS domain BRM78_08790 PF03471 Transporter associated domain BRM78_08790 PF01595 Cyclin M transmembrane N-terminal domain BRM78_08805 PF01384 Phosphate transporter family BRM78_08810 PF02698 DUF218 domain BRM78_08825 PF01751 Toprim domain BRM78_08825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_08825 PF00986 DNA gyrase B subunit, carboxyl terminus BRM78_08825 PF00204 DNA gyrase B BRM78_08835 PF00117 Glutamine amidotransferase class-I BRM78_08835 PF06418 CTP synthase N-terminus BRM78_08840 PF00793 DAHP synthetase I family BRM78_08850 PF00113 Enolase, C-terminal TIM barrel domain BRM78_08850 PF03952 Enolase, N-terminal domain BRM78_08855 PF04977 Septum formation initiator BRM78_08860 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BRM78_08870 PF02542 YgbB family BRM78_08875 PF01142 tRNA pseudouridine synthase D (TruD) BRM78_08885 PF01713 Smr domain BRM78_08890 PF01975 Survival protein SurE BRM78_08900 PF09335 SNARE associated Golgi protein BRM78_08905 PF01551 Peptidase family M23 BRM78_08905 PF01476 LysM domain BRM78_08915 PF01985 CRS1 / YhbY (CRM) domain BRM78_08920 PF01728 FtsJ-like methyltransferase BRM78_08925 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_08925 PF17862 AAA+ lid domain BRM78_08925 PF01434 Peptidase family M41 BRM78_08925 PF06480 FtsH Extracellular BRM78_08930 PF00809 Pterin binding enzyme BRM78_08940 PF17209 Hfq protein BRM78_08945 PF13167 GTP-binding GTPase N-terminal BRM78_08945 PF16360 GTP-binding GTPase Middle Region BRM78_08945 PF01926 50S ribosome-binding GTPase BRM78_08950 PF02464 Competence-damaged protein BRM78_08955 PF03109 ABC1 family BRM78_08960 PF00717 Peptidase S24-like BRM78_08960 PF01726 LexA DNA binding domain BRM78_08965 PF00154 recA bacterial DNA recombination protein BRM78_08975 PF02631 RecX family BRM78_08980 PF02272 DHHA1 domain BRM78_08980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRM78_08980 PF01411 tRNA synthetases class II (A) BRM78_08985 PF02599 Global regulator protein family BRM78_09010 PF00772 DnaB-like helicase N terminal domain BRM78_09010 PF03796 DnaB-like helicase C terminal domain BRM78_09035 PF17954 Quercetinase C-terminal cupin domain BRM78_09035 PF02678 Pirin BRM78_09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_09040 PF03466 LysR substrate binding domain BRM78_09070 PF08543 Phosphomethylpyrimidine kinase BRM78_09080 PF02562 PhoH-like protein BRM78_09080 PF13638 PIN domain BRM78_09085 PF00578 AhpC/TSA family BRM78_09100 PF00701 Dihydrodipicolinate synthetase family BRM78_09110 PF11953 Domain of unknown function (DUF3470) BRM78_09110 PF00037 4Fe-4S binding domain BRM78_09115 PF05035 2-keto-3-deoxy-galactonokinase BRM78_09120 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM78_09125 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM78_09125 PF13378 Enolase C-terminal domain-like BRM78_09130 PF01081 KDPG and KHG aldolase BRM78_09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_09135 PF03466 LysR substrate binding domain BRM78_09145 PF17137 Domain of unknown function (DUF5110) BRM78_09145 PF01055 Glycosyl hydrolases family 31 BRM78_09145 PF16338 Domain of unknown function (DUF4968) BRM78_09155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BRM78_09155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BRM78_09165 PF00083 Sugar (and other) transporter BRM78_09185 PF09285 Elongation factor P, C-terminal BRM78_09185 PF08207 Elongation factor P (EF-P) KOW-like domain BRM78_09185 PF01132 Elongation factor P (EF-P) OB domain BRM78_09190 PF00106 short chain dehydrogenase BRM78_09195 PF00682 HMGL-like BRM78_09205 PF00378 Enoyl-CoA hydratase/isomerase BRM78_09215 PF07670 Nucleoside recognition BRM78_09215 PF02421 Ferrous iron transport protein B BRM78_09215 PF07664 Ferrous iron transport protein B C terminus BRM78_09235 PF00155 Aminotransferase class I and II BRM78_09240 PF03475 3-alpha domain BRM78_09240 PF03473 MOSC domain BRM78_09250 PF01113 Dihydrodipicolinate reductase, N-terminus BRM78_09250 PF05173 Dihydrodipicolinate reductase, C-terminus BRM78_09255 PF00117 Glutamine amidotransferase class-I BRM78_09255 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BRM78_09265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM78_09265 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BRM78_09265 PF02142 MGS-like domain BRM78_09270 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM78_09270 PF03449 Transcription elongation factor, N-terminal BRM78_09280 PF17768 RecJ OB domain BRM78_09280 PF02272 DHHA1 domain BRM78_09280 PF01368 DHH family BRM78_09315 PF13542 Helix-turn-helix domain of transposase family ISL3 BRM78_09315 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 BRM78_09315 PF01610 Transposase BRM78_09340 PF01336 OB-fold nucleic acid binding domain BRM78_09340 PF00152 tRNA synthetases class II (D, K and N) BRM78_09345 PF00072 Response regulator receiver domain BRM78_09355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_09355 PF00072 Response regulator receiver domain BRM78_09355 PF00512 His Kinase A (phospho-acceptor) domain BRM78_09355 PF01627 Hpt domain BRM78_09360 PF00378 Enoyl-CoA hydratase/isomerase BRM78_09365 PF13193 AMP-binding enzyme C-terminal domain BRM78_09365 PF00501 AMP-binding enzyme BRM78_09375 PF00330 Aconitase family (aconitate hydratase) BRM78_09375 PF00694 Aconitase C-terminal domain BRM78_09390 PF00330 Aconitase family (aconitate hydratase) BRM78_09390 PF06434 Aconitate hydratase 2 N-terminus BRM78_09390 PF11791 Aconitate B N-terminal domain BRM78_09395 PF00561 alpha/beta hydrolase fold BRM78_09410 PF03707 Bacterial signalling protein N terminal repeat BRM78_09410 PF00563 EAL domain BRM78_09410 PF00990 Diguanylate cyclase, GGDEF domain BRM78_09415 PF01339 CheB methylesterase BRM78_09415 PF00072 Response regulator receiver domain BRM78_09420 PF03975 CheD chemotactic sensory transduction BRM78_09425 PF01739 CheR methyltransferase, SAM binding domain BRM78_09425 PF03705 CheR methyltransferase, all-alpha domain BRM78_09430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09430 PF00672 HAMP domain BRM78_09430 PF02203 Tar ligand binding domain homologue BRM78_09455 PF01584 CheW-like domain BRM78_09460 PF07317 Flagellar regulator YcgR BRM78_09460 PF07238 PilZ domain BRM78_09475 PF00672 HAMP domain BRM78_09475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09475 PF02203 Tar ligand binding domain homologue BRM78_09480 PF00672 HAMP domain BRM78_09480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09480 PF02203 Tar ligand binding domain homologue BRM78_09485 PF02203 Tar ligand binding domain homologue BRM78_09485 PF00672 HAMP domain BRM78_09485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09490 PF00672 HAMP domain BRM78_09490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09490 PF02203 Tar ligand binding domain homologue BRM78_09500 PF00672 HAMP domain BRM78_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09500 PF02203 Tar ligand binding domain homologue BRM78_09510 PF02203 Tar ligand binding domain homologue BRM78_09510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09510 PF00672 HAMP domain BRM78_09525 PF00672 HAMP domain BRM78_09525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_09525 PF02203 Tar ligand binding domain homologue BRM78_09545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_09545 PF02895 Signal transducing histidine kinase, homodimeric domain BRM78_09545 PF09078 CheY binding BRM78_09545 PF01584 CheW-like domain BRM78_09545 PF01627 Hpt domain BRM78_09550 PF00072 Response regulator receiver domain BRM78_09560 PF01584 CheW-like domain BRM78_09565 PF13614 AAA domain BRM78_09570 PF00691 OmpA family BRM78_09570 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRM78_09575 PF01618 MotA/TolQ/ExbB proton channel family BRM78_09585 PF00593 TonB dependent receptor BRM78_09585 PF07715 TonB-dependent Receptor Plug Domain BRM78_09595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM78_09595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM78_09605 PF00593 TonB dependent receptor BRM78_09605 PF07715 TonB-dependent Receptor Plug Domain BRM78_09635 PF05598 Transposase domain (DUF772) BRM78_09635 PF01609 Transposase DDE domain BRM78_09695 PF04717 Type VI secretion system, phage-baseplate injector BRM78_09695 PF16671 Actin cross-linking domain BRM78_09700 PF03377 TAL effector repeat BRM78_09715 PF04717 Type VI secretion system, phage-baseplate injector BRM78_09715 PF16671 Actin cross-linking domain BRM78_09755 PF01609 Transposase DDE domain BRM78_09755 PF05598 Transposase domain (DUF772) BRM78_09770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BRM78_09775 PF00294 pfkB family carbohydrate kinase BRM78_09780 PF05524 PEP-utilising enzyme, N-terminal BRM78_09780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRM78_09780 PF00391 PEP-utilising enzyme, mobile domain BRM78_09780 PF02896 PEP-utilising enzyme, TIM barrel domain BRM78_09780 PF00381 PTS HPr component phosphorylation site BRM78_09785 PF00356 Bacterial regulatory proteins, lacI family BRM78_09805 PF00873 AcrB/AcrD/AcrF family BRM78_09810 PF00529 HlyD membrane-fusion protein of T1SS BRM78_09810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_09820 PF05088 Bacterial NAD-glutamate dehydrogenase BRM78_09830 PF01609 Transposase DDE domain BRM78_09830 PF05598 Transposase domain (DUF772) BRM78_09835 PF00072 Response regulator receiver domain BRM78_09840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM78_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_09840 PF00512 His Kinase A (phospho-acceptor) domain BRM78_09840 PF01627 Hpt domain BRM78_09840 PF00672 HAMP domain BRM78_09840 PF00072 Response regulator receiver domain BRM78_09845 PF04286 Protein of unknown function (DUF445) BRM78_09855 PF00005 ABC transporter BRM78_09860 PF00202 Aminotransferase class-III BRM78_09880 PF07690 Major Facilitator Superfamily BRM78_09885 PF02634 FdhD/NarQ family BRM78_09890 PF00384 Molybdopterin oxidoreductase BRM78_09900 PF07690 Major Facilitator Superfamily BRM78_09900 PF00083 Sugar (and other) transporter BRM78_09905 PF00072 Response regulator receiver domain BRM78_09905 PF00990 Diguanylate cyclase, GGDEF domain BRM78_09910 PF01266 FAD dependent oxidoreductase BRM78_09915 PF00120 Glutamine synthetase, catalytic domain BRM78_09925 PF00120 Glutamine synthetase, catalytic domain BRM78_09940 PF13533 Biotin-lipoyl like BRM78_09945 PF07690 Major Facilitator Superfamily BRM78_09950 PF02321 Outer membrane efflux protein BRM78_09955 PF00005 ABC transporter BRM78_09955 PF08402 TOBE domain BRM78_09960 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_09965 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_09975 PF00171 Aldehyde dehydrogenase family BRM78_09990 PF03471 Transporter associated domain BRM78_09990 PF00571 CBS domain BRM78_10000 PF02130 Uncharacterized protein family UPF0054 BRM78_10010 PF02562 PhoH-like protein BRM78_10015 PF00919 Uncharacterized protein family UPF0004 BRM78_10015 PF01938 TRAM domain BRM78_10015 PF04055 Radical SAM superfamily BRM78_10035 PF01464 Transglycosylase SLT domain BRM78_10045 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BRM78_10045 PF00355 Rieske [2Fe-2S] domain BRM78_10050 PF00032 Cytochrome b(C-terminal)/b6/petD BRM78_10050 PF00033 Cytochrome b/b6/petB BRM78_10055 PF02167 Cytochrome C1 family BRM78_10060 PF02798 Glutathione S-transferase, N-terminal domain BRM78_10060 PF00043 Glutathione S-transferase, C-terminal domain BRM78_10065 PF04386 Stringent starvation protein B BRM78_10110 PF00872 Transposase, Mutator family BRM78_10125 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRM78_10125 PF14850 DNA-binding domain of Proline dehydrogenase BRM78_10125 PF01619 Proline dehydrogenase BRM78_10125 PF00171 Aldehyde dehydrogenase family BRM78_10175 PF04679 ATP dependent DNA ligase C terminal region BRM78_10175 PF01068 ATP dependent DNA ligase domain BRM78_10175 PF13298 DNA polymerase Ligase (LigD) BRM78_10180 PF01612 3'-5' exonuclease BRM78_10180 PF00570 HRDC domain BRM78_10195 PF03781 Sulfatase-modifying factor enzyme 1 BRM78_10210 PF02601 Exonuclease VII, large subunit BRM78_10210 PF13742 OB-fold nucleic acid binding domain BRM78_10220 PF08331 Domain of unknown function (DUF1730) BRM78_10225 PF03853 YjeF-related protein N-terminus BRM78_10225 PF01256 Carbohydrate kinase BRM78_10230 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BRM78_10235 PF01520 N-acetylmuramoyl-L-alanine amidase BRM78_10235 PF11741 AMIN domain BRM78_10240 PF01119 DNA mismatch repair protein, C-terminal domain BRM78_10240 PF08676 MutL C terminal dimerisation domain BRM78_10260 PF07879 PHB/PHA accumulation regulator DNA-binding domain BRM78_10260 PF05233 PHB accumulation regulatory domain BRM78_10265 PF00106 short chain dehydrogenase BRM78_10270 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM78_10275 PF01435 Peptidase family M48 BRM78_10280 PF00072 Response regulator receiver domain BRM78_10280 PF00990 Diguanylate cyclase, GGDEF domain BRM78_10280 PF00563 EAL domain BRM78_10290 PF07152 YaeQ protein BRM78_10295 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BRM78_10300 PF00313 'Cold-shock' DNA-binding domain BRM78_10305 PF02798 Glutathione S-transferase, N-terminal domain BRM78_10305 PF14497 Glutathione S-transferase, C-terminal domain BRM78_10315 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BRM78_10320 PF00156 Phosphoribosyl transferase domain BRM78_10325 PF03880 DbpA RNA binding domain BRM78_10325 PF00270 DEAD/DEAH box helicase BRM78_10325 PF00271 Helicase conserved C-terminal domain BRM78_10350 PF00545 ribonuclease BRM78_10355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM78_10355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM78_10360 PF00459 Inositol monophosphatase family BRM78_10365 PF00588 SpoU rRNA Methylase family BRM78_10375 PF00563 EAL domain BRM78_10375 PF00990 Diguanylate cyclase, GGDEF domain BRM78_10375 PF03707 Bacterial signalling protein N terminal repeat BRM78_10375 PF13188 PAS domain BRM78_10380 PF04055 Radical SAM superfamily BRM78_10385 PF08207 Elongation factor P (EF-P) KOW-like domain BRM78_10385 PF01132 Elongation factor P (EF-P) OB domain BRM78_10385 PF09285 Elongation factor P, C-terminal BRM78_10395 PF01979 Amidohydrolase family BRM78_10405 PF13419 Haloacid dehalogenase-like hydrolase BRM78_10415 PF00295 Glycosyl hydrolases family 28 BRM78_10430 PF01095 Pectinesterase BRM78_10445 PF01609 Transposase DDE domain BRM78_10445 PF05598 Transposase domain (DUF772) BRM78_10480 PF01551 Peptidase family M23 BRM78_10480 PF08460 Bacterial SH3 domain BRM78_10485 PF01979 Amidohydrolase family BRM78_10490 PF01809 Putative membrane protein insertion efficiency factor BRM78_10495 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRM78_10510 PF02657 Fe-S metabolism associated domain BRM78_10515 PF01406 tRNA synthetases class I (C) catalytic domain BRM78_10515 PF09190 DALR domain BRM78_10525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRM78_10525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRM78_10530 PF00764 Arginosuccinate synthase BRM78_10540 PF07687 Peptidase dimerisation domain BRM78_10540 PF01546 Peptidase family M20/M25/M40 BRM78_10545 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BRM78_10545 PF00696 Amino acid kinase family BRM78_10555 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRM78_10560 PF00206 Lyase BRM78_10575 PF00696 Amino acid kinase family BRM78_10575 PF01472 PUA domain BRM78_10580 PF00171 Aldehyde dehydrogenase family BRM78_10585 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BRM78_10585 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BRM78_10615 PF01654 Cytochrome bd terminal oxidase subunit I BRM78_10635 PF00664 ABC transporter transmembrane region BRM78_10635 PF00005 ABC transporter BRM78_10640 PF00664 ABC transporter transmembrane region BRM78_10640 PF00005 ABC transporter BRM78_10695 PF00034 Cytochrome c BRM78_10715 PF00873 AcrB/AcrD/AcrF family BRM78_10740 PF05598 Transposase domain (DUF772) BRM78_10740 PF01609 Transposase DDE domain BRM78_10780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_10780 PF01627 Hpt domain BRM78_10780 PF02895 Signal transducing histidine kinase, homodimeric domain BRM78_10780 PF07194 P2 response regulator binding domain BRM78_10780 PF01584 CheW-like domain BRM78_10785 PF04344 Chemotaxis phosphatase, CheZ BRM78_10790 PF00072 Response regulator receiver domain BRM78_10795 PF04545 Sigma-70, region 4 BRM78_10795 PF04539 Sigma-70 region 3 BRM78_10795 PF04542 Sigma-70 region 2 BRM78_10800 PF10609 NUBPL iron-transfer P-loop NTPase BRM78_10805 PF00448 SRP54-type protein, GTPase domain BRM78_10810 PF00771 FHIPEP family BRM78_10815 PF01312 FlhB HrpN YscU SpaS Family BRM78_10820 PF03707 Bacterial signalling protein N terminal repeat BRM78_10820 PF00990 Diguanylate cyclase, GGDEF domain BRM78_10820 PF00563 EAL domain BRM78_10825 PF00563 EAL domain BRM78_10825 PF00990 Diguanylate cyclase, GGDEF domain BRM78_10825 PF03707 Bacterial signalling protein N terminal repeat BRM78_10825 PF13188 PAS domain BRM78_10830 PF00990 Diguanylate cyclase, GGDEF domain BRM78_10830 PF03707 Bacterial signalling protein N terminal repeat BRM78_10830 PF13188 PAS domain BRM78_10830 PF00563 EAL domain BRM78_10835 PF01311 Bacterial export proteins, family 1 BRM78_10840 PF01313 Bacterial export proteins, family 3 BRM78_10850 PF00813 FliP family BRM78_10855 PF04347 Flagellar biosynthesis protein, FliO BRM78_10860 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRM78_10865 PF02154 Flagellar motor switch protein FliM BRM78_10865 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRM78_10885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM78_10885 PF18269 T3SS EscN ATPase C-terminal domain BRM78_10895 PF01706 FliG C-terminal domain BRM78_10895 PF14841 FliG middle domain BRM78_10895 PF14842 FliG N-terminal domain BRM78_10900 PF01514 Secretory protein of YscJ/FliF family BRM78_10900 PF08345 Flagellar M-ring protein C-terminal BRM78_10905 PF02049 Flagellar hook-basal body complex protein FliE BRM78_10915 PF00535 Glycosyl transferase family 2 BRM78_10915 PF00534 Glycosyl transferases group 1 BRM78_10950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM78_10950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM78_10960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRM78_10965 PF02954 Bacterial regulatory protein, Fis family BRM78_10965 PF00158 Sigma-54 interaction domain BRM78_10965 PF00072 Response regulator receiver domain BRM78_10970 PF00072 Response regulator receiver domain BRM78_10970 PF01339 CheB methylesterase BRM78_10975 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRM78_10975 PF04963 Sigma-54 factor, core binding domain BRM78_10975 PF04552 Sigma-54, DNA binding domain BRM78_10980 PF00196 Bacterial regulatory proteins, luxR family BRM78_10980 PF00072 Response regulator receiver domain BRM78_10995 PF02561 Flagellar protein FliS BRM78_11000 PF02465 Flagellar hook-associated protein 2 N-terminus BRM78_11000 PF07195 Flagellar hook-associated protein 2 C-terminus BRM78_11000 PF07196 Flagellin hook IN motif BRM78_11005 PF00669 Bacterial flagellin N-terminal helical region BRM78_11005 PF00700 Bacterial flagellin C-terminal helical region BRM78_11015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM78_11015 PF07196 Flagellin hook IN motif BRM78_11020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BRM78_11020 PF10135 Rod binding protein BRM78_11025 PF02119 Flagellar P-ring protein BRM78_11030 PF02107 Flagellar L-ring protein BRM78_11035 PF00460 Flagella basal body rod protein BRM78_11035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM78_11045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM78_11045 PF00460 Flagella basal body rod protein BRM78_11050 PF00460 Flagella basal body rod protein BRM78_11050 PF07559 Flagellar basal body protein FlaE BRM78_11050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM78_11055 PF03963 Flagellar hook capping protein - N-terminal region BRM78_11060 PF00460 Flagella basal body rod protein BRM78_11060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM78_11070 PF00072 Response regulator receiver domain BRM78_11070 PF01584 CheW-like domain BRM78_11090 PF13426 PAS domain BRM78_11090 PF13188 PAS domain BRM78_11090 PF00989 PAS fold BRM78_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_11090 PF00512 His Kinase A (phospho-acceptor) domain BRM78_11095 PF00990 Diguanylate cyclase, GGDEF domain BRM78_11095 PF00563 EAL domain BRM78_11095 PF03707 Bacterial signalling protein N terminal repeat BRM78_11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_11100 PF07730 Histidine kinase BRM78_11105 PF00990 Diguanylate cyclase, GGDEF domain BRM78_11105 PF00563 EAL domain BRM78_11105 PF08447 PAS fold BRM78_11105 PF08448 PAS fold BRM78_11120 PF12729 Four helix bundle sensory module for signal transduction BRM78_11120 PF00672 HAMP domain BRM78_11120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_11125 PF04356 Protein of unknown function (DUF489) BRM78_11135 PF00293 NUDIX domain BRM78_11140 PF02617 ATP-dependent Clp protease adaptor protein ClpS BRM78_11145 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_11145 PF10431 C-terminal, D2-small domain, of ClpB protein BRM78_11145 PF02861 Clp amino terminal domain, pathogenicity island component BRM78_11145 PF07724 AAA domain (Cdc48 subfamily) BRM78_11145 PF17871 AAA lid domain BRM78_11150 PF01176 Translation initiation factor 1A / IF-1 BRM78_11155 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BRM78_11170 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_11175 PF17854 FtsK alpha domain BRM78_11175 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BRM78_11175 PF01580 FtsK/SpoIIIE family BRM78_11175 PF09397 Ftsk gamma domain BRM78_11185 PF03548 Outer membrane lipoprotein carrier protein LolA BRM78_11200 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_11200 PF16193 AAA C-terminal domain BRM78_11200 PF12002 MgsA AAA+ ATPase C terminal BRM78_11210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BRM78_11220 PF00654 Voltage gated chloride channel BRM78_11225 PF00108 Thiolase, N-terminal domain BRM78_11225 PF02803 Thiolase, C-terminal domain BRM78_11230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM78_11230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM78_11230 PF00378 Enoyl-CoA hydratase/isomerase BRM78_11240 PF00334 Nucleoside diphosphate kinase BRM78_11245 PF04055 Radical SAM superfamily BRM78_11255 PF13464 Domain of unknown function (DUF4115) BRM78_11265 PF13360 PQQ-like domain BRM78_11265 PF01011 PQQ enzyme repeat BRM78_11270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BRM78_11270 PF01926 50S ribosome-binding GTPase BRM78_11275 PF00994 Probable molybdopterin binding domain BRM78_11275 PF03454 MoeA C-terminal region (domain IV) BRM78_11275 PF03453 MoeA N-terminal region (domain I and II) BRM78_11305 PF01609 Transposase DDE domain BRM78_11305 PF05598 Transposase domain (DUF772) BRM78_11315 PF05598 Transposase domain (DUF772) BRM78_11315 PF01609 Transposase DDE domain BRM78_11330 PF05598 Transposase domain (DUF772) BRM78_11345 PF00899 ThiF family BRM78_11360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_11360 PF00183 Hsp90 protein BRM78_11370 PF01467 Cytidylyltransferase-like BRM78_11385 PF00037 4Fe-4S binding domain BRM78_11475 PF02547 Queuosine biosynthesis protein BRM78_11480 PF01702 Queuine tRNA-ribosyltransferase BRM78_11485 PF02699 Preprotein translocase subunit BRM78_11490 PF02355 Protein export membrane protein BRM78_11490 PF07549 SecD/SecF GG Motif BRM78_11490 PF13721 SecD export protein N-terminal TM region BRM78_11495 PF07549 SecD/SecF GG Motif BRM78_11495 PF02355 Protein export membrane protein BRM78_11500 PF13495 Phage integrase, N-terminal SAM-like domain BRM78_11500 PF00589 Phage integrase family BRM78_11530 PF00872 Transposase, Mutator family BRM78_11545 PF00929 Exonuclease BRM78_11555 PF01895 PhoU domain BRM78_11560 PF00005 ABC transporter BRM78_11565 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_11570 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_11575 PF12849 PBP superfamily domain BRM78_11580 PF12849 PBP superfamily domain BRM78_11615 PF01609 Transposase DDE domain BRM78_11615 PF05598 Transposase domain (DUF772) BRM78_11620 PF00484 Carbonic anhydrase BRM78_11630 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM78_11630 PF00633 Helix-hairpin-helix motif BRM78_11630 PF10576 Iron-sulfur binding domain of endonuclease III BRM78_11640 PF00378 Enoyl-CoA hydratase/isomerase BRM78_11645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM78_11645 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRM78_11650 PF00293 NUDIX domain BRM78_11655 PF00581 Rhodanese-like domain BRM78_11695 PF01170 Putative RNA methylase family UPF0020 BRM78_11695 PF10672 S-adenosylmethionine-dependent methyltransferase BRM78_11695 PF02926 THUMP domain BRM78_11705 PF01513 ATP-NAD kinase BRM78_11720 PF00248 Aldo/keto reductase family BRM78_11730 PF08411 Exonuclease C-terminal BRM78_11730 PF00929 Exonuclease BRM78_11735 PF01494 FAD binding domain BRM78_11740 PF00266 Aminotransferase class-V BRM78_11750 PF06052 3-hydroxyanthranilic acid dioxygenase BRM78_11755 PF00484 Carbonic anhydrase BRM78_11780 PF00152 tRNA synthetases class II (D, K and N) BRM78_11780 PF01336 OB-fold nucleic acid binding domain BRM78_11790 PF01521 Iron-sulphur cluster biosynthesis BRM78_11795 PF01250 Ribosomal protein S6 BRM78_11800 PF01084 Ribosomal protein S18 BRM78_11805 PF01281 Ribosomal protein L9, N-terminal domain BRM78_11805 PF03948 Ribosomal protein L9, C-terminal domain BRM78_11810 PF02463 RecF/RecN/SMC N terminal domain BRM78_11815 PF04354 ZipA, C-terminal FtsZ-binding domain BRM78_11825 PF12826 Helix-hairpin-helix motif BRM78_11825 PF01653 NAD-dependent DNA ligase adenylation domain BRM78_11825 PF03120 NAD-dependent DNA ligase OB-fold domain BRM78_11825 PF00533 BRCA1 C Terminus (BRCT) domain BRM78_11825 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BRM78_11830 PF00152 tRNA synthetases class II (D, K and N) BRM78_11845 PF01008 Initiation factor 2 subunit family BRM78_11850 PF00521 DNA gyrase/topoisomerase IV, subunit A BRM78_11850 PF03989 DNA gyrase C-terminal domain, beta-propeller BRM78_11870 PF17391 Urocanase N-terminal domain BRM78_11870 PF01175 Urocanase Rossmann-like domain BRM78_11870 PF17392 Urocanase C-terminal domain BRM78_11880 PF00221 Aromatic amino acid lyase BRM78_11885 PF07969 Amidohydrolase family BRM78_11895 PF07702 UTRA domain BRM78_11895 PF00392 Bacterial regulatory proteins, gntR family BRM78_11920 PF01794 Ferric reductase like transmembrane component BRM78_11930 PF00174 Oxidoreductase molybdopterin binding domain BRM78_11935 PF00266 Aminotransferase class-V BRM78_11940 PF01842 ACT domain BRM78_11940 PF01817 Chorismate mutase type II BRM78_11940 PF00800 Prephenate dehydratase BRM78_11945 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRM78_11980 PF12951 Passenger-associated-transport-repeat BRM78_11985 PF00072 Response regulator receiver domain BRM78_11985 PF00196 Bacterial regulatory proteins, luxR family BRM78_11990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_11990 PF00512 His Kinase A (phospho-acceptor) domain BRM78_11990 PF08448 PAS fold BRM78_11990 PF13426 PAS domain BRM78_11990 PF00072 Response regulator receiver domain BRM78_11995 PF02321 Outer membrane efflux protein BRM78_12000 PF00873 AcrB/AcrD/AcrF family BRM78_12005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_12015 PF03797 Autotransporter beta-domain BRM78_12015 PF00082 Subtilase family BRM78_12020 PF05598 Transposase domain (DUF772) BRM78_12035 PF01520 N-acetylmuramoyl-L-alanine amidase BRM78_12040 PF02649 Type I GTP cyclohydrolase folE2 BRM78_12050 PF01743 Poly A polymerase head domain BRM78_12050 PF12626 Polymerase A arginine-rich C-terminus BRM78_12050 PF12627 Probable RNA and SrmB- binding site of polymerase A BRM78_12055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRM78_12060 PF02548 Ketopantoate hydroxymethyltransferase BRM78_12065 PF02569 Pantoate-beta-alanine ligase BRM78_12070 PF02261 Aspartate decarboxylase BRM78_12100 PF14310 Fibronectin type III-like domain BRM78_12100 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM78_12100 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM78_12110 PF00474 Sodium:solute symporter family BRM78_12120 PF00360 Phytochrome region BRM78_12120 PF01590 GAF domain BRM78_12120 PF00563 EAL domain BRM78_12120 PF00990 Diguanylate cyclase, GGDEF domain BRM78_12135 PF14310 Fibronectin type III-like domain BRM78_12135 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM78_12135 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM78_12170 PF12802 MarR family BRM78_12180 PF04542 Sigma-70 region 2 BRM78_12180 PF08281 Sigma-70, region 4 BRM78_12210 PF00255 Glutathione peroxidase BRM78_12215 PF00175 Oxidoreductase NAD-binding domain BRM78_12215 PF00970 Oxidoreductase FAD-binding domain BRM78_12220 PF00005 ABC transporter BRM78_12225 PF05681 Fumarate hydratase (Fumerase) BRM78_12225 PF05683 Fumarase C-terminus BRM78_12240 PF02253 Phospholipase A1 BRM78_12260 PF00990 Diguanylate cyclase, GGDEF domain BRM78_12260 PF08448 PAS fold BRM78_12290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_12290 PF00512 His Kinase A (phospho-acceptor) domain BRM78_12290 PF01627 Hpt domain BRM78_12290 PF00072 Response regulator receiver domain BRM78_12290 PF00672 HAMP domain BRM78_12290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM78_12320 PF01081 KDPG and KHG aldolase BRM78_12325 PF00920 Dehydratase family BRM78_12330 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BRM78_12335 PF02685 Glucokinase BRM78_12340 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRM78_12340 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRM78_12345 PF00005 ABC transporter BRM78_12345 PF17912 MalK OB fold domain BRM78_12355 PF01571 Aminomethyltransferase folate-binding domain BRM78_12365 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRM78_12370 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRM78_12375 PF00890 FAD binding domain BRM78_12375 PF02910 Fumarate reductase flavoprotein C-term BRM78_12385 PF13085 2Fe-2S iron-sulfur cluster binding domain BRM78_12390 PF03937 Flavinator of succinate dehydrogenase BRM78_12400 PF02687 FtsX-like permease family BRM78_12400 PF12704 MacB-like periplasmic core domain BRM78_12405 PF00005 ABC transporter BRM78_12425 PF03772 Competence protein BRM78_12425 PF00753 Metallo-beta-lactamase superfamily BRM78_12430 PF01618 MotA/TolQ/ExbB proton channel family BRM78_12440 PF00664 ABC transporter transmembrane region BRM78_12440 PF00005 ABC transporter BRM78_12445 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BRM78_12450 PF02348 Cytidylyltransferase BRM78_12455 PF01451 Low molecular weight phosphotyrosine protein phosphatase BRM78_12465 PF02151 UvrB/uvrC motif BRM78_12465 PF01541 GIY-YIG catalytic domain BRM78_12465 PF08459 UvrC Helix-hairpin-helix N-terminal BRM78_12470 PF01066 CDP-alcohol phosphatidyltransferase BRM78_12490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM78_12500 PF00872 Transposase, Mutator family BRM78_12525 PF05598 Transposase domain (DUF772) BRM78_12525 PF01609 Transposase DDE domain BRM78_12540 PF13333 Integrase core domain BRM78_12540 PF13276 HTH-like domain BRM78_12540 PF00665 Integrase core domain BRM78_12550 PF03377 TAL effector repeat BRM78_12570 PF03377 TAL effector repeat BRM78_12615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM78_12615 PF02403 Seryl-tRNA synthetase N-terminal domain BRM78_12620 PF03544 Gram-negative bacterial TonB protein C-terminal BRM78_12645 PF05598 Transposase domain (DUF772) BRM78_12645 PF01609 Transposase DDE domain BRM78_12650 PF01609 Transposase DDE domain BRM78_12650 PF05598 Transposase domain (DUF772) BRM78_12660 PF00561 alpha/beta hydrolase fold BRM78_12665 PF00313 'Cold-shock' DNA-binding domain BRM78_12675 PF00872 Transposase, Mutator family BRM78_12700 PF01609 Transposase DDE domain BRM78_12700 PF05598 Transposase domain (DUF772) BRM78_12715 PF00588 SpoU rRNA Methylase family BRM78_12715 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRM78_12735 PF08206 Ribonuclease B OB domain BRM78_12735 PF00773 RNB domain BRM78_12735 PF00575 S1 RNA binding domain BRM78_12735 PF17876 Cold shock domain BRM78_12735 PF08461 Ribonuclease R winged-helix domain BRM78_12765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM78_12765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM78_12765 PF02770 Acyl-CoA dehydrogenase, middle domain BRM78_12770 PF01209 ubiE/COQ5 methyltransferase family BRM78_12775 PF00809 Pterin binding enzyme BRM78_12775 PF02574 Homocysteine S-methyltransferase BRM78_12780 PF00809 Pterin binding enzyme BRM78_12780 PF02965 Vitamin B12 dependent methionine synthase, activation domain BRM78_12780 PF02574 Homocysteine S-methyltransferase BRM78_12780 PF02310 B12 binding domain BRM78_12780 PF02607 B12 binding domain BRM78_12790 PF00294 pfkB family carbohydrate kinase BRM78_12795 PF07690 Major Facilitator Superfamily BRM78_12815 PF04102 SlyX BRM78_12820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRM78_12820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRM78_12820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRM78_12825 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRM78_12825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM78_12830 PF00255 Glutathione peroxidase BRM78_12840 PF00392 Bacterial regulatory proteins, gntR family BRM78_12845 PF00005 ABC transporter BRM78_12875 PF00206 Lyase BRM78_12875 PF10415 Fumarase C C-terminus BRM78_12905 PF00206 Lyase BRM78_12905 PF08328 Adenylosuccinate lyase C-terminal BRM78_12925 PF08007 Cupin superfamily protein BRM78_12935 PF02779 Transketolase, pyrimidine binding domain BRM78_12935 PF16870 2-oxoglutarate dehydrogenase C-terminal BRM78_12935 PF00676 Dehydrogenase E1 component BRM78_12935 PF16078 2-oxoglutarate dehydrogenase N-terminus BRM78_12940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRM78_12940 PF00364 Biotin-requiring enzyme BRM78_12940 PF02817 e3 binding domain BRM78_12945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRM78_12945 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_12950 PF03641 Possible lysine decarboxylase BRM78_12955 PF01205 Uncharacterized protein family UPF0029 BRM78_12960 PF00005 ABC transporter BRM78_12960 PF00664 ABC transporter transmembrane region BRM78_12975 PF03466 LysR substrate binding domain BRM78_12975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_12995 PF01817 Chorismate mutase type II BRM78_12995 PF02153 Prephenate dehydrogenase BRM78_13000 PF08543 Phosphomethylpyrimidine kinase BRM78_13010 PF00226 DnaJ domain BRM78_13010 PF01556 DnaJ C terminal domain BRM78_13010 PF00684 DnaJ central domain BRM78_13015 PF00012 Hsp70 protein BRM78_13020 PF01025 GrpE BRM78_13025 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BRM78_13025 PF01628 HrcA protein C terminal domain BRM78_13030 PF02463 RecF/RecN/SMC N terminal domain BRM78_13035 PF01475 Ferric uptake regulator family BRM78_13040 PF04355 SmpA / OmlA family BRM78_13050 PF03658 RnfH family Ubiquitin BRM78_13055 PF03364 Polyketide cyclase / dehydrase and lipid transport BRM78_13060 PF01668 SmpB protein BRM78_13075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM78_13075 PF12806 Acetyl-CoA dehydrogenase C-terminal like BRM78_13075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM78_13075 PF02770 Acyl-CoA dehydrogenase, middle domain BRM78_13085 PF02779 Transketolase, pyrimidine binding domain BRM78_13085 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BRM78_13085 PF02780 Transketolase, C-terminal domain BRM78_13130 PF07690 Major Facilitator Superfamily BRM78_13135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_13135 PF00529 HlyD membrane-fusion protein of T1SS BRM78_13140 PF02321 Outer membrane efflux protein BRM78_13155 PF00521 DNA gyrase/topoisomerase IV, subunit A BRM78_13155 PF03989 DNA gyrase C-terminal domain, beta-propeller BRM78_13165 PF00210 Ferritin-like domain BRM78_13170 PF01804 Penicillin amidase BRM78_13175 PF00593 TonB dependent receptor BRM78_13175 PF07715 TonB-dependent Receptor Plug Domain BRM78_13190 PF00733 Asparagine synthase BRM78_13190 PF13537 Glutamine amidotransferase domain BRM78_13195 PF01546 Peptidase family M20/M25/M40 BRM78_13195 PF07687 Peptidase dimerisation domain BRM78_13205 PF03960 ArsC family BRM78_13215 PF00132 Bacterial transferase hexapeptide (six repeats) BRM78_13215 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BRM78_13215 PF14602 Hexapeptide repeat of succinyl-transferase BRM78_13220 PF08335 GlnD PII-uridylyltransferase BRM78_13220 PF01909 Nucleotidyltransferase domain BRM78_13220 PF01966 HD domain BRM78_13225 PF00557 Metallopeptidase family M24 BRM78_13260 PF00318 Ribosomal protein S2 BRM78_13265 PF00889 Elongation factor TS BRM78_13275 PF00696 Amino acid kinase family BRM78_13280 PF01765 Ribosome recycling factor BRM78_13285 PF01255 Putative undecaprenyl diphosphate synthase BRM78_13295 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BRM78_13295 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BRM78_13295 PF13288 DXP reductoisomerase C-terminal domain BRM78_13300 PF17820 PDZ domain BRM78_13300 PF02163 Peptidase family M50 BRM78_13305 PF01103 Surface antigen BRM78_13305 PF07244 Surface antigen variable number repeat BRM78_13315 PF00132 Bacterial transferase hexapeptide (six repeats) BRM78_13315 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BRM78_13320 PF07977 FabA-like domain BRM78_13325 PF00132 Bacterial transferase hexapeptide (six repeats) BRM78_13325 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BRM78_13330 PF02684 Lipid-A-disaccharide synthetase BRM78_13335 PF01351 Ribonuclease HII BRM78_13340 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRM78_13340 PF14579 Helix-hairpin-helix motif BRM78_13340 PF02811 PHP domain BRM78_13340 PF01336 OB-fold nucleic acid binding domain BRM78_13340 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRM78_13345 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BRM78_13355 PF07715 TonB-dependent Receptor Plug Domain BRM78_13355 PF00593 TonB dependent receptor BRM78_13360 PF13732 Domain of unknown function (DUF4162) BRM78_13360 PF00005 ABC transporter BRM78_13425 PF00009 Elongation factor Tu GTP binding domain BRM78_13445 PF05598 Transposase domain (DUF772) BRM78_13460 PF02592 Putative vitamin uptake transporter BRM78_13475 PF02574 Homocysteine S-methyltransferase BRM78_13480 PF00324 Amino acid permease BRM78_13500 PF09334 tRNA synthetases class I (M) BRM78_13500 PF01588 Putative tRNA binding domain BRM78_13510 PF04060 Putative Fe-S cluster BRM78_13530 PF04545 Sigma-70, region 4 BRM78_13530 PF04542 Sigma-70 region 2 BRM78_13575 PF01042 Endoribonuclease L-PSP BRM78_13585 PF09924 Uncharacterised conserved protein (DUF2156) BRM78_13585 PF03706 Lysylphosphatidylglycerol synthase TM region BRM78_13640 PF07690 Major Facilitator Superfamily BRM78_13645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM78_13660 PF03831 PhnA domain BRM78_13660 PF08274 PhnA Zinc-Ribbon BRM78_13675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM78_13720 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRM78_13730 PF07043 Protein of unknown function (DUF1328) BRM78_13735 PF01863 Protein of unknown function DUF45 BRM78_13750 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BRM78_13750 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BRM78_13755 PF12951 Passenger-associated-transport-repeat BRM78_13755 PF00082 Subtilase family BRM78_13755 PF03797 Autotransporter beta-domain BRM78_13760 PF00108 Thiolase, N-terminal domain BRM78_13760 PF02803 Thiolase, C-terminal domain BRM78_13775 PF00990 Diguanylate cyclase, GGDEF domain BRM78_13775 PF00072 Response regulator receiver domain BRM78_13790 PF04679 ATP dependent DNA ligase C terminal region BRM78_13790 PF01068 ATP dependent DNA ligase domain BRM78_13790 PF04675 DNA ligase N terminus BRM78_13800 PF04679 ATP dependent DNA ligase C terminal region BRM78_13800 PF01068 ATP dependent DNA ligase domain BRM78_13800 PF04675 DNA ligase N terminus BRM78_13805 PF08494 DEAD/H associated BRM78_13805 PF00271 Helicase conserved C-terminal domain BRM78_13805 PF00270 DEAD/DEAH box helicase BRM78_13825 PF00313 'Cold-shock' DNA-binding domain BRM78_13830 PF01048 Phosphorylase superfamily BRM78_13840 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM78_13845 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BRM78_13850 PF01593 Flavin containing amine oxidoreductase BRM78_13855 PF01323 DSBA-like thioredoxin domain BRM78_13860 PF05598 Transposase domain (DUF772) BRM78_13875 PF05958 tRNA (Uracil-5-)-methyltransferase BRM78_13885 PF11967 Recombination protein O N terminal BRM78_13885 PF02565 Recombination protein O C terminal BRM78_13890 PF01926 50S ribosome-binding GTPase BRM78_13890 PF07650 KH domain BRM78_13895 PF14622 Ribonuclease-III-like BRM78_13895 PF00035 Double-stranded RNA binding motif BRM78_13905 PF10502 Signal peptidase, peptidase S26 BRM78_13910 PF03144 Elongation factor Tu domain 2 BRM78_13910 PF00009 Elongation factor Tu GTP binding domain BRM78_13910 PF06421 GTP-binding protein LepA C-terminus BRM78_13910 PF00679 Elongation factor G C-terminus BRM78_13915 PF13180 PDZ domain BRM78_13925 PF08281 Sigma-70, region 4 BRM78_13925 PF04542 Sigma-70 region 2 BRM78_13930 PF00378 Enoyl-CoA hydratase/isomerase BRM78_13930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM78_13930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM78_13935 PF01545 Cation efflux family BRM78_13940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRM78_13940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM78_13945 PF00378 Enoyl-CoA hydratase/isomerase BRM78_13945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM78_13945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM78_13950 PF00378 Enoyl-CoA hydratase/isomerase BRM78_13955 PF02770 Acyl-CoA dehydrogenase, middle domain BRM78_13955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM78_13955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM78_13960 PF00171 Aldehyde dehydrogenase family BRM78_13965 PF09856 Predicted transcriptional regulator (DUF2083) BRM78_13965 PF01381 Helix-turn-helix BRM78_13965 PF06114 IrrE N-terminal-like domain BRM78_14010 PF01627 Hpt domain BRM78_14010 PF00512 His Kinase A (phospho-acceptor) domain BRM78_14010 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM78_14010 PF00072 Response regulator receiver domain BRM78_14010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_14010 PF00672 HAMP domain BRM78_14015 PF00072 Response regulator receiver domain BRM78_14015 PF01627 Hpt domain BRM78_14015 PF00512 His Kinase A (phospho-acceptor) domain BRM78_14015 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM78_14015 PF00672 HAMP domain BRM78_14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_14020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_14020 PF00672 HAMP domain BRM78_14020 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM78_14020 PF00512 His Kinase A (phospho-acceptor) domain BRM78_14020 PF01627 Hpt domain BRM78_14020 PF00072 Response regulator receiver domain BRM78_14025 PF04264 YceI-like domain BRM78_14035 PF04264 YceI-like domain BRM78_14050 PF03315 Serine dehydratase beta chain BRM78_14050 PF03313 Serine dehydratase alpha chain BRM78_14060 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM78_14065 PF00561 alpha/beta hydrolase fold BRM78_14070 PF08525 Opacity-associated protein A N-terminal motif BRM78_14070 PF01551 Peptidase family M23 BRM78_14070 PF01476 LysM domain BRM78_14075 PF16658 Class II release factor RF3, C-terminal domain BRM78_14075 PF00009 Elongation factor Tu GTP binding domain BRM78_14080 PF03006 Haemolysin-III related BRM78_14100 PF00535 Glycosyl transferase family 2 BRM78_14105 PF00912 Transglycosylase BRM78_14110 PF01430 Hsp33 protein BRM78_14120 PF00593 TonB dependent receptor BRM78_14120 PF07715 TonB-dependent Receptor Plug Domain BRM78_14125 PF00440 Bacterial regulatory proteins, tetR family BRM78_14135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM78_14135 PF09317 Domain of unknown function (DUF1974) BRM78_14135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM78_14170 PF01597 Glycine cleavage H-protein BRM78_14175 PF01571 Aminomethyltransferase folate-binding domain BRM78_14175 PF08669 Glycine cleavage T-protein C-terminal barrel domain BRM78_14185 PF01145 SPFH domain / Band 7 family BRM78_14185 PF16200 C-terminal region of band_7 BRM78_14200 PF03819 MazG nucleotide pyrophosphohydrolase domain BRM78_14205 PF00459 Inositol monophosphatase family BRM78_14210 PF00293 NUDIX domain BRM78_14215 PF00202 Aminotransferase class-III BRM78_14220 PF04452 RNA methyltransferase BRM78_14225 PF02685 Glucokinase BRM78_14240 PF00704 Glycosyl hydrolases family 18 BRM78_14240 PF01476 LysM domain BRM78_14260 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM78_14260 PF07691 PA14 domain BRM78_14260 PF14310 Fibronectin type III-like domain BRM78_14260 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM78_14265 PF00664 ABC transporter transmembrane region BRM78_14265 PF00005 ABC transporter BRM78_14265 PF03412 Peptidase C39 family BRM78_14290 PF05598 Transposase domain (DUF772) BRM78_14290 PF01609 Transposase DDE domain BRM78_14340 PF17678 Glycosyl hydrolase family 92 N-terminal domain BRM78_14340 PF07971 Glycosyl hydrolase family 92 BRM78_14350 PF01301 Glycosyl hydrolases family 35 BRM78_14400 PF03932 CutC family BRM78_14405 PF01112 Asparaginase BRM78_14435 PF13302 Acetyltransferase (GNAT) domain BRM78_14450 PF01627 Hpt domain BRM78_14450 PF00072 Response regulator receiver domain BRM78_14450 PF01584 CheW-like domain BRM78_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_14455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_14455 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BRM78_14460 PF01584 CheW-like domain BRM78_14465 PF00072 Response regulator receiver domain BRM78_14470 PF00072 Response regulator receiver domain BRM78_14475 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BRM78_14475 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BRM78_14485 PF03747 ADP-ribosylglycohydrolase BRM78_14490 PF00814 Glycoprotease family BRM78_14495 PF13307 Helicase C-terminal domain BRM78_14495 PF04851 Type III restriction enzyme, res subunit BRM78_14505 PF14814 Bifunctional transglycosylase second domain BRM78_14505 PF00912 Transglycosylase BRM78_14505 PF00905 Penicillin binding protein transpeptidase domain BRM78_14510 PF00535 Glycosyl transferase family 2 BRM78_14520 PF04607 Region found in RelA / SpoT proteins BRM78_14520 PF02824 TGS domain BRM78_14520 PF13291 ACT domain BRM78_14525 PF08042 PqqA family BRM78_14530 PF12706 Beta-lactamase superfamily domain BRM78_14535 PF03070 TENA/THI-4/PQQC family BRM78_14540 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BRM78_14545 PF04055 Radical SAM superfamily BRM78_14545 PF13186 Iron-sulfur cluster-binding domain BRM78_14575 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BRM78_14575 PF00271 Helicase conserved C-terminal domain BRM78_14575 PF04408 Helicase associated domain (HA2) BRM78_14575 PF11898 Domain of unknown function (DUF3418) BRM78_14575 PF00270 DEAD/DEAH box helicase BRM78_14580 PF00210 Ferritin-like domain BRM78_14590 PF00270 DEAD/DEAH box helicase BRM78_14590 PF00271 Helicase conserved C-terminal domain BRM78_14590 PF00570 HRDC domain BRM78_14590 PF16124 RecQ zinc-binding BRM78_14590 PF09382 RQC domain BRM78_14615 PF06508 Queuosine biosynthesis protein QueC BRM78_14625 PF05598 Transposase domain (DUF772) BRM78_14675 PF01479 S4 domain BRM78_14675 PF00849 RNA pseudouridylate synthase BRM78_14685 PF04055 Radical SAM superfamily BRM78_14695 PF00691 OmpA family BRM78_14700 PF04052 TolB amino-terminal domain BRM78_14700 PF07676 WD40-like Beta Propeller Repeat BRM78_14710 PF02472 Biopolymer transport protein ExbD/TolR BRM78_14715 PF01618 MotA/TolQ/ExbB proton channel family BRM78_14720 PF03061 Thioesterase superfamily BRM78_14725 PF05496 Holliday junction DNA helicase RuvB P-loop domain BRM78_14725 PF05491 RuvB C-terminal winged helix domain BRM78_14725 PF17864 RuvB AAA lid domain BRM78_14730 PF02705 K+ potassium transporter BRM78_14735 PF07499 RuvA, C-terminal domain BRM78_14735 PF01330 RuvA N terminal domain BRM78_14740 PF02075 Crossover junction endodeoxyribonuclease RuvC BRM78_14745 PF01709 Transcriptional regulator BRM78_14760 PF01336 OB-fold nucleic acid binding domain BRM78_14760 PF02938 GAD domain BRM78_14760 PF00152 tRNA synthetases class II (D, K and N) BRM78_14800 PF18073 Rubredoxin metal binding domain BRM78_14825 PF05190 MutS family domain IV BRM78_14825 PF01624 MutS domain I BRM78_14825 PF05188 MutS domain II BRM78_14825 PF05192 MutS domain III BRM78_14825 PF00488 MutS domain V BRM78_14855 PF05593 RHS Repeat BRM78_14855 PF14220 Domain of unknown function (DUF4329) BRM78_14855 PF03527 RHS protein BRM78_14855 PF03527 RHS protein BRM78_14855 PF05593 RHS Repeat BRM78_14855 PF14220 Domain of unknown function (DUF4329) BRM78_14865 PF04717 Type VI secretion system, phage-baseplate injector BRM78_14875 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BRM78_14880 PF00510 Cytochrome c oxidase subunit III BRM78_14885 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRM78_14890 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRM78_14890 PF06481 COX Aromatic Rich Motif BRM78_14900 PF02401 LytB protein BRM78_14905 PF01252 Signal peptidase (SPase) II BRM78_14910 PF08264 Anticodon-binding domain of tRNA BRM78_14910 PF00133 tRNA synthetases class I (I, L, M and V) BRM78_14910 PF06827 Zinc finger found in FPG and IleRS BRM78_14915 PF01687 Riboflavin kinase BRM78_14915 PF06574 FAD synthetase BRM78_14920 PF03023 Lipid II flippase MurJ BRM78_14925 PF01649 Ribosomal protein S20 BRM78_14930 PF01018 GTP1/OBG BRM78_14930 PF01926 50S ribosome-binding GTPase BRM78_14935 PF01016 Ribosomal L27 protein BRM78_14940 PF00829 Ribosomal prokaryotic L21 protein BRM78_14945 PF00005 ABC transporter BRM78_14945 PF17760 UvrA interaction domain BRM78_14945 PF17755 UvrA DNA-binding domain BRM78_14960 PF00378 Enoyl-CoA hydratase/isomerase BRM78_14975 PF04542 Sigma-70 region 2 BRM78_14975 PF08281 Sigma-70, region 4 BRM78_14995 PF04376 Arginine-tRNA-protein transferase, N terminus BRM78_14995 PF04377 Arginine-tRNA-protein transferase, C terminus BRM78_15025 PF00593 TonB dependent receptor BRM78_15025 PF07715 TonB-dependent Receptor Plug Domain BRM78_15035 PF02358 Trehalose-phosphatase BRM78_15040 PF00723 Glycosyl hydrolases family 15 BRM78_15045 PF00982 Glycosyltransferase family 20 BRM78_15065 PF00849 RNA pseudouridylate synthase BRM78_15070 PF13525 Outer membrane lipoprotein BRM78_15075 PF00795 Carbon-nitrogen hydrolase BRM78_15075 PF02540 NAD synthase BRM78_15090 PF02629 CoA binding domain BRM78_15090 PF00549 CoA-ligase BRM78_15095 PF08442 ATP-grasp domain BRM78_15095 PF00549 CoA-ligase BRM78_15100 PF00512 His Kinase A (phospho-acceptor) domain BRM78_15100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_15105 PF00072 Response regulator receiver domain BRM78_15105 PF00158 Sigma-54 interaction domain BRM78_15105 PF02954 Bacterial regulatory protein, Fis family BRM78_15120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM78_15120 PF00437 Type II/IV secretion system protein BRM78_15135 PF00884 Sulfatase BRM78_15135 PF08019 Phosphoethanolamine transferase EptA/EptB BRM78_15140 PF07963 Prokaryotic N-terminal methylation motif BRM78_15140 PF00114 Pilin (bacterial filament) BRM78_15145 PF00482 Type II secretion system (T2SS), protein F BRM78_15150 PF01478 Type IV leader peptidase family BRM78_15150 PF06750 Bacterial Peptidase A24 N-terminal domain BRM78_15155 PF01121 Dephospho-CoA kinase BRM78_15195 PF05598 Transposase domain (DUF772) BRM78_15195 PF01609 Transposase DDE domain BRM78_15210 PF01609 Transposase DDE domain BRM78_15210 PF05598 Transposase domain (DUF772) BRM78_15235 PF00005 ABC transporter BRM78_15235 PF00664 ABC transporter transmembrane region BRM78_15245 PF00873 AcrB/AcrD/AcrF family BRM78_15260 PF02321 Outer membrane efflux protein BRM78_15265 PF00486 Transcriptional regulatory protein, C terminal BRM78_15265 PF00072 Response regulator receiver domain BRM78_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_15270 PF00672 HAMP domain BRM78_15270 PF00512 His Kinase A (phospho-acceptor) domain BRM78_15275 PF00999 Sodium/hydrogen exchanger family BRM78_15280 PF00144 Beta-lactamase BRM78_15285 PF03737 Aldolase/RraA BRM78_15310 PF01479 S4 domain BRM78_15310 PF00849 RNA pseudouridylate synthase BRM78_15315 PF00990 Diguanylate cyclase, GGDEF domain BRM78_15315 PF00563 EAL domain BRM78_15315 PF08448 PAS fold BRM78_15320 PF03880 DbpA RNA binding domain BRM78_15320 PF00270 DEAD/DEAH box helicase BRM78_15320 PF00271 Helicase conserved C-terminal domain BRM78_15365 PF12833 Helix-turn-helix domain BRM78_15365 PF06029 AlkA N-terminal domain BRM78_15365 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM78_15365 PF02805 Metal binding domain of Ada BRM78_15370 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BRM78_15370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BRM78_15375 PF05598 Transposase domain (DUF772) BRM78_15375 PF01609 Transposase DDE domain BRM78_15385 PF00654 Voltage gated chloride channel BRM78_15390 PF00107 Zinc-binding dehydrogenase BRM78_15390 PF08240 Alcohol dehydrogenase GroES-like domain BRM78_15425 PF00691 OmpA family BRM78_15425 PF05736 OprF membrane domain BRM78_15440 PF00875 DNA photolyase BRM78_15440 PF03441 FAD binding domain of DNA photolyase BRM78_15445 PF00772 DnaB-like helicase N terminal domain BRM78_15445 PF03796 DnaB-like helicase C terminal domain BRM78_15450 PF03358 NADPH-dependent FMN reductase BRM78_15455 PF00733 Asparagine synthase BRM78_15455 PF13537 Glutamine amidotransferase domain BRM78_15460 PF13417 Glutathione S-transferase, N-terminal domain BRM78_15470 PF02770 Acyl-CoA dehydrogenase, middle domain BRM78_15470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM78_15470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM78_15485 PF01026 TatD related DNase BRM78_15490 PF00899 ThiF family BRM78_15505 PF00313 'Cold-shock' DNA-binding domain BRM78_15555 PF01475 Ferric uptake regulator family BRM78_15560 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM78_15595 PF05598 Transposase domain (DUF772) BRM78_15595 PF01609 Transposase DDE domain BRM78_15620 PF05598 Transposase domain (DUF772) BRM78_15620 PF01609 Transposase DDE domain BRM78_15645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_15645 PF00672 HAMP domain BRM78_15645 PF00512 His Kinase A (phospho-acceptor) domain BRM78_15665 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BRM78_15675 PF17757 UvrB interaction domain BRM78_15675 PF03461 TRCF domain BRM78_15675 PF02559 CarD-like/TRCF domain BRM78_15675 PF00271 Helicase conserved C-terminal domain BRM78_15675 PF00270 DEAD/DEAH box helicase BRM78_15685 PF01584 CheW-like domain BRM78_15685 PF02895 Signal transducing histidine kinase, homodimeric domain BRM78_15685 PF09078 CheY binding BRM78_15685 PF01627 Hpt domain BRM78_15685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_15690 PF02203 Tar ligand binding domain homologue BRM78_15690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM78_15690 PF00672 HAMP domain BRM78_15695 PF01584 CheW-like domain BRM78_15700 PF00563 EAL domain BRM78_15700 PF00990 Diguanylate cyclase, GGDEF domain BRM78_15700 PF13426 PAS domain BRM78_15705 PF01739 CheR methyltransferase, SAM binding domain BRM78_15705 PF03705 CheR methyltransferase, all-alpha domain BRM78_15710 PF00072 Response regulator receiver domain BRM78_15710 PF01339 CheB methylesterase BRM78_15720 PF05649 Peptidase family M13 BRM78_15720 PF01431 Peptidase family M13 BRM78_15735 PF00300 Histidine phosphatase superfamily (branch 1) BRM78_15740 PF04493 Endonuclease V BRM78_15750 PF05726 Pirin C-terminal cupin domain BRM78_15750 PF02678 Pirin BRM78_15805 PF04717 Type VI secretion system, phage-baseplate injector BRM78_15835 PF04717 Type VI secretion system, phage-baseplate injector BRM78_15855 PF04717 Type VI secretion system, phage-baseplate injector BRM78_15865 PF05726 Pirin C-terminal cupin domain BRM78_15865 PF02678 Pirin BRM78_15870 PF02554 Carbon starvation protein CstA BRM78_15870 PF13722 5TM C-terminal transporter carbon starvation CstA BRM78_15875 PF04328 Selenoprotein, putative BRM78_15915 PF01590 GAF domain BRM78_15915 PF00563 EAL domain BRM78_15915 PF00990 Diguanylate cyclase, GGDEF domain BRM78_15915 PF00360 Phytochrome region BRM78_15925 PF00436 Single-strand binding protein family BRM78_15930 PF00348 Polyprenyl synthetase BRM78_15945 PF08245 Mur ligase middle domain BRM78_15960 PF01842 ACT domain BRM78_15960 PF00696 Amino acid kinase family BRM78_15970 PF02567 Phenazine biosynthesis-like protein BRM78_15980 PF02566 OsmC-like protein BRM78_15990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRM78_15990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRM78_15995 PF03652 Holliday junction resolvase BRM78_16000 PF02622 Uncharacterized ACR, COG1678 BRM78_16010 PF00117 Glutamine amidotransferase class-I BRM78_16010 PF13673 Acetyltransferase (GNAT) domain BRM78_16010 PF13302 Acetyltransferase (GNAT) domain BRM78_16010 PF03352 Methyladenine glycosylase BRM78_16010 PF00958 GMP synthase C terminal domain BRM78_16035 PF00437 Type II/IV secretion system protein BRM78_16040 PF00437 Type II/IV secretion system protein BRM78_16045 PF01168 Alanine racemase, N-terminal domain BRM78_16050 PF14748 Pyrroline-5-carboxylate reductase dimerisation BRM78_16050 PF03807 NADP oxidoreductase coenzyme F420-dependent BRM78_16090 PF01965 DJ-1/PfpI family BRM78_16110 PF02082 Transcriptional regulator BRM78_16115 PF01458 Uncharacterized protein family (UPF0051) BRM78_16120 PF00005 ABC transporter BRM78_16125 PF01458 Uncharacterized protein family (UPF0051) BRM78_16130 PF00266 Aminotransferase class-V BRM78_16140 PF00355 Rieske [2Fe-2S] domain BRM78_16175 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM78_16185 PF07722 Peptidase C26 BRM78_16190 PF01810 LysE type translocator BRM78_16195 PF04204 Homoserine O-succinyltransferase BRM78_16200 PF00120 Glutamine synthetase, catalytic domain BRM78_16205 PF00872 Transposase, Mutator family BRM78_16240 PF12833 Helix-turn-helix domain BRM78_16260 PF07859 alpha/beta hydrolase fold BRM78_16260 PF13472 GDSL-like Lipase/Acylhydrolase family BRM78_16270 PF03466 LysR substrate binding domain BRM78_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_16285 PF00005 ABC transporter BRM78_16285 PF12848 ABC transporter BRM78_16290 PF07715 TonB-dependent Receptor Plug Domain BRM78_16290 PF00593 TonB dependent receptor BRM78_16305 PF00593 TonB dependent receptor BRM78_16305 PF07715 TonB-dependent Receptor Plug Domain BRM78_16310 PF07715 TonB-dependent Receptor Plug Domain BRM78_16310 PF00593 TonB dependent receptor BRM78_16320 PF02254 TrkA-N domain BRM78_16320 PF00999 Sodium/hydrogen exchanger family BRM78_16335 PF07715 TonB-dependent Receptor Plug Domain BRM78_16335 PF07660 Secretin and TonB N terminus short domain BRM78_16335 PF00593 TonB dependent receptor BRM78_16345 PF06276 Ferric iron reductase FhuF-like transporter BRM78_16345 PF04183 IucA / IucC family BRM78_16350 PF07690 Major Facilitator Superfamily BRM78_16360 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRM78_16360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BRM78_16370 PF02654 Cobalamin-5-phosphate synthase BRM78_16380 PF02277 Phosphoribosyltransferase BRM78_16385 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BRM78_16395 PF12557 Cob(I)alamin adenosyltransferase N terminal BRM78_16395 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BRM78_16420 PF07715 TonB-dependent Receptor Plug Domain BRM78_16420 PF00593 TonB dependent receptor BRM78_16460 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_16460 PF07724 AAA domain (Cdc48 subfamily) BRM78_16460 PF17871 AAA lid domain BRM78_16460 PF10431 C-terminal, D2-small domain, of ClpB protein BRM78_16460 PF02861 Clp amino terminal domain, pathogenicity island component BRM78_16465 PF01541 GIY-YIG catalytic domain BRM78_16495 PF01479 S4 domain BRM78_16500 PF01554 MatE BRM78_16510 PF01245 Ribosomal protein L19 BRM78_16515 PF01746 tRNA (Guanine-1)-methyltransferase BRM78_16520 PF05239 PRC-barrel domain BRM78_16520 PF01782 RimM N-terminal domain BRM78_16525 PF00886 Ribosomal protein S16 BRM78_16535 PF03060 Nitronate monooxygenase BRM78_16550 PF02978 Signal peptide binding domain BRM78_16550 PF02881 SRP54-type protein, helical bundle domain BRM78_16550 PF00448 SRP54-type protein, GTPase domain BRM78_16560 PF01578 Cytochrome C assembly protein BRM78_16565 PF01263 Aldose 1-epimerase BRM78_16570 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BRM78_16615 PF07687 Peptidase dimerisation domain BRM78_16615 PF01546 Peptidase family M20/M25/M40 BRM78_16630 PF01636 Phosphotransferase enzyme family BRM78_16635 PF00483 Nucleotidyl transferase BRM78_16640 PF00308 Bacterial dnaA protein BRM78_16645 PF01594 AI-2E family transporter BRM78_16655 PF00586 AIR synthase related protein, N-terminal domain BRM78_16655 PF02769 AIR synthase related protein, C-terminal domain BRM78_16670 PF00551 Formyl transferase BRM78_16690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRM78_16700 PF01722 BolA-like protein BRM78_16705 PF00571 CBS domain BRM78_16705 PF01380 SIS domain BRM78_16720 PF03968 OstA-like protein BRM78_16725 PF00005 ABC transporter BRM78_16730 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRM78_16730 PF04963 Sigma-54 factor, core binding domain BRM78_16730 PF04552 Sigma-54, DNA binding domain BRM78_16735 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BRM78_16740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRM78_16745 PF02603 HPr Serine kinase N terminus BRM78_16745 PF07475 HPr Serine kinase C-terminal domain BRM78_16750 PF03668 P-loop ATPase protein family BRM78_16760 PF00381 PTS HPr component phosphorylation site BRM78_16765 PF05524 PEP-utilising enzyme, N-terminal BRM78_16765 PF00391 PEP-utilising enzyme, mobile domain BRM78_16765 PF02896 PEP-utilising enzyme, TIM barrel domain BRM78_16775 PF01769 Divalent cation transporter BRM78_16775 PF00571 CBS domain BRM78_16775 PF03448 MgtE intracellular N domain BRM78_16780 PF00756 Putative esterase BRM78_16785 PF02322 Cytochrome bd terminal oxidase subunit II BRM78_16790 PF01654 Cytochrome bd terminal oxidase subunit I BRM78_16810 PF00324 Amino acid permease BRM78_16820 PF00561 alpha/beta hydrolase fold BRM78_16825 PF00196 Bacterial regulatory proteins, luxR family BRM78_16830 PF00324 Amino acid permease BRM78_16850 PF12706 Beta-lactamase superfamily domain BRM78_16885 PF00376 MerR family regulatory protein BRM78_16885 PF09278 MerR, DNA binding BRM78_16900 PF03738 Glutathionylspermidine synthase preATP-grasp BRM78_16925 PF04012 PspA/IM30 family BRM78_16935 PF01243 Pyridoxamine 5'-phosphate oxidase BRM78_16935 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BRM78_16940 PF01202 Shikimate kinase BRM78_16945 PF01761 3-dehydroquinate synthase BRM78_16955 PF01208 Uroporphyrinogen decarboxylase (URO-D) BRM78_16975 PF03377 TAL effector repeat BRM78_17010 PF03377 TAL effector repeat BRM78_17020 PF13333 Integrase core domain BRM78_17020 PF13276 HTH-like domain BRM78_17020 PF00665 Integrase core domain BRM78_17040 PF00202 Aminotransferase class-III BRM78_17050 PF00127 Copper binding proteins, plastocyanin/azurin family BRM78_17065 PF00034 Cytochrome c BRM78_17065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BRM78_17070 PF01593 Flavin containing amine oxidoreductase BRM78_17085 PF00202 Aminotransferase class-III BRM78_17090 PF00027 Cyclic nucleotide-binding domain BRM78_17090 PF00520 Ion transport protein BRM78_17120 PF08443 RimK-like ATP-grasp domain BRM78_17120 PF18030 RimK PreATP-grasp domain BRM78_17130 PF00486 Transcriptional regulatory protein, C terminal BRM78_17130 PF00072 Response regulator receiver domain BRM78_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_17135 PF00512 His Kinase A (phospho-acceptor) domain BRM78_17135 PF00672 HAMP domain BRM78_17155 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BRM78_17155 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BRM78_17190 PF04273 Putative phosphatase (DUF442) BRM78_17190 PF00753 Metallo-beta-lactamase superfamily BRM78_17200 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_17205 PF03459 TOBE domain BRM78_17205 PF00005 ABC transporter BRM78_17225 PF00512 His Kinase A (phospho-acceptor) domain BRM78_17225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_17225 PF08521 Two-component sensor kinase N-terminal BRM78_17230 PF00486 Transcriptional regulatory protein, C terminal BRM78_17230 PF00072 Response regulator receiver domain BRM78_17250 PF00501 AMP-binding enzyme BRM78_17275 PF01476 LysM domain BRM78_17275 PF03734 L,D-transpeptidase catalytic domain BRM78_17280 PF01551 Peptidase family M23 BRM78_17280 PF04225 Opacity-associated protein A LysM-like domain BRM78_17290 PF02779 Transketolase, pyrimidine binding domain BRM78_17290 PF02780 Transketolase, C-terminal domain BRM78_17290 PF00456 Transketolase, thiamine diphosphate binding domain BRM78_17295 PF00375 Sodium:dicarboxylate symporter family BRM78_17315 PF07584 Aerotolerance regulator N-terminal BRM78_17315 PF00092 von Willebrand factor type A domain BRM78_17335 PF07726 ATPase family associated with various cellular activities (AAA) BRM78_17335 PF17863 AAA lid domain BRM78_17360 PF03958 Bacterial type II/III secretion system short domain BRM78_17360 PF07660 Secretin and TonB N terminus short domain BRM78_17360 PF00263 Bacterial type II and III secretion system protein BRM78_17360 PF11741 AMIN domain BRM78_17385 PF17092 Penicillin-binding protein OB-like domain BRM78_17385 PF00912 Transglycosylase BRM78_17385 PF00905 Penicillin binding protein transpeptidase domain BRM78_17395 PF00285 Citrate synthase, C-terminal domain BRM78_17400 PF01197 Ribosomal protein L31 BRM78_17405 PF01156 Inosine-uridine preferring nucleoside hydrolase BRM78_17410 PF17191 RecG wedge domain BRM78_17410 PF00271 Helicase conserved C-terminal domain BRM78_17410 PF00270 DEAD/DEAH box helicase BRM78_17415 PF01042 Endoribonuclease L-PSP BRM78_17420 PF02824 TGS domain BRM78_17420 PF13291 ACT domain BRM78_17420 PF04607 Region found in RelA / SpoT proteins BRM78_17425 PF01192 RNA polymerase Rpb6 BRM78_17440 PF00625 Guanylate kinase BRM78_17445 PF03755 YicC-like family, N-terminal region BRM78_17445 PF08340 Domain of unknown function (DUF1732) BRM78_17450 PF01138 3' exoribonuclease family, domain 1 BRM78_17450 PF03725 3' exoribonuclease family, domain 2 BRM78_17460 PF01725 Ham1 family BRM78_17465 PF04055 Radical SAM superfamily BRM78_17465 PF06969 HemN C-terminal domain BRM78_17480 PF00557 Metallopeptidase family M24 BRM78_17500 PF05195 Aminopeptidase P, N-terminal domain BRM78_17500 PF00557 Metallopeptidase family M24 BRM78_17505 PF03695 Uncharacterised protein family (UPF0149) BRM78_17515 PF05164 Cell division protein ZapA BRM78_17525 PF01812 5-formyltetrahydrofolate cyclo-ligase family BRM78_17535 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BRM78_17545 PF13369 Transglutaminase-like superfamily BRM78_17550 PF00301 Rubredoxin BRM78_17555 PF02581 Thiamine monophosphate synthase BRM78_17590 PF03949 Malic enzyme, NAD binding domain BRM78_17590 PF01515 Phosphate acetyl/butaryl transferase BRM78_17590 PF00390 Malic enzyme, N-terminal domain BRM78_17595 PF00375 Sodium:dicarboxylate symporter family BRM78_17610 PF00512 His Kinase A (phospho-acceptor) domain BRM78_17610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_17615 PF07690 Major Facilitator Superfamily BRM78_17625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_17625 PF03466 LysR substrate binding domain BRM78_17645 PF00072 Response regulator receiver domain BRM78_17645 PF00196 Bacterial regulatory proteins, luxR family BRM78_17655 PF00512 His Kinase A (phospho-acceptor) domain BRM78_17655 PF08521 Two-component sensor kinase N-terminal BRM78_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_17660 PF00486 Transcriptional regulatory protein, C terminal BRM78_17660 PF00072 Response regulator receiver domain BRM78_17675 PF03600 Citrate transporter BRM78_17680 PF00106 short chain dehydrogenase BRM78_17685 PF00356 Bacterial regulatory proteins, lacI family BRM78_17705 PF00128 Alpha amylase, catalytic domain BRM78_17720 PF03193 RsgA GTPase BRM78_17745 PF01522 Polysaccharide deacetylase BRM78_17750 PF00462 Glutaredoxin BRM78_17780 PF01609 Transposase DDE domain BRM78_17780 PF05598 Transposase domain (DUF772) BRM78_17830 PF01327 Polypeptide deformylase BRM78_17850 PF07726 ATPase family associated with various cellular activities (AAA) BRM78_17850 PF17863 AAA lid domain BRM78_17860 PF11992 Domain of unknown function (DUF3488) BRM78_17860 PF13559 Domain of unknown function (DUF4129) BRM78_17860 PF01841 Transglutaminase-like superfamily BRM78_17870 PF01230 HIT domain BRM78_17875 PF13662 Toprim domain BRM78_17875 PF02132 RecR protein BRM78_17880 PF02575 YbaB/EbfC DNA-binding family BRM78_17885 PF12170 DNA polymerase III tau subunit V interacting with alpha BRM78_17885 PF12169 DNA polymerase III subunits gamma and tau domain III BRM78_17885 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BRM78_17900 PF02391 MoaE protein BRM78_17905 PF02597 ThiS family BRM78_17910 PF01967 MoaC family BRM78_17920 PF04055 Radical SAM superfamily BRM78_17920 PF06463 Molybdenum Cofactor Synthesis C BRM78_17925 PF00753 Metallo-beta-lactamase superfamily BRM78_17925 PF12706 Beta-lactamase superfamily domain BRM78_17935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BRM78_17945 PF13356 Arm DNA-binding domain BRM78_17945 PF00589 Phage integrase family BRM78_18005 PF16671 Actin cross-linking domain BRM78_18005 PF04717 Type VI secretion system, phage-baseplate injector BRM78_18040 PF00929 Exonuclease BRM78_18045 PF00075 RNase H BRM78_18055 PF00753 Metallo-beta-lactamase superfamily BRM78_18055 PF16123 Hydroxyacylglutathione hydrolase C-terminus BRM78_18060 PF01476 LysM domain BRM78_18060 PF05257 CHAP domain BRM78_18085 PF00216 Bacterial DNA-binding protein BRM78_18090 PF00004 ATPase family associated with various cellular activities (AAA) BRM78_18090 PF02190 ATP-dependent protease La (LON) substrate-binding domain BRM78_18090 PF05362 Lon protease (S16) C-terminal proteolytic domain BRM78_18095 PF06689 ClpX C4-type zinc finger BRM78_18095 PF07724 AAA domain (Cdc48 subfamily) BRM78_18095 PF10431 C-terminal, D2-small domain, of ClpB protein BRM78_18100 PF00574 Clp protease BRM78_18105 PF05697 Bacterial trigger factor protein (TF) BRM78_18105 PF05698 Bacterial trigger factor protein (TF) C-terminus BRM78_18160 PF18324 Hypothetical protein TT1725 BRM78_18160 PF00180 Isocitrate/isopropylmalate dehydrogenase BRM78_18185 PF03009 Glycerophosphoryl diester phosphodiesterase family BRM78_18210 PF01609 Transposase DDE domain BRM78_18210 PF05598 Transposase domain (DUF772) BRM78_18335 PF02600 Disulfide bond formation protein DsbB BRM78_18345 PF01474 Class-II DAHP synthetase family BRM78_18370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BRM78_18375 PF00056 lactate/malate dehydrogenase, NAD binding domain BRM78_18375 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BRM78_18380 PF00043 Glutathione S-transferase, C-terminal domain BRM78_18380 PF02798 Glutathione S-transferase, N-terminal domain BRM78_18400 PF01062 Bestrophin, RFP-TM, chloride channel BRM78_18410 PF01225 Mur ligase family, catalytic domain BRM78_18410 PF02875 Mur ligase family, glutamate ligase domain BRM78_18410 PF08245 Mur ligase middle domain BRM78_18420 PF00365 Phosphofructokinase BRM78_18440 PF03030 Inorganic H+ pyrophosphatase BRM78_18460 PF00719 Inorganic pyrophosphatase BRM78_18475 PF07715 TonB-dependent Receptor Plug Domain BRM78_18475 PF00593 TonB dependent receptor BRM78_18480 PF12833 Helix-turn-helix domain BRM78_18485 PF00486 Transcriptional regulatory protein, C terminal BRM78_18485 PF18500 CadC C-terminal domain 1 BRM78_18490 PF13667 ThiC-associated domain BRM78_18490 PF01964 Radical SAM ThiC family BRM78_18500 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BRM78_18500 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BRM78_18505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRM78_18505 PF00205 Thiamine pyrophosphate enzyme, central domain BRM78_18505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRM78_18515 PF00291 Pyridoxal-phosphate dependent enzyme BRM78_18520 PF00682 HMGL-like BRM78_18520 PF08502 LeuA allosteric (dimerisation) domain BRM78_18525 PF00180 Isocitrate/isopropylmalate dehydrogenase BRM78_18535 PF00694 Aconitase C-terminal domain BRM78_18540 PF00330 Aconitase family (aconitate hydratase) BRM78_18545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_18570 PF02321 Outer membrane efflux protein BRM78_18575 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BRM78_18580 PF03279 Bacterial lipid A biosynthesis acyltransferase BRM78_18620 PF05598 Transposase domain (DUF772) BRM78_18630 PF11838 ERAP1-like C-terminal domain BRM78_18630 PF01433 Peptidase family M1 domain BRM78_18635 PF00709 Adenylosuccinate synthetase BRM78_18645 PF01145 SPFH domain / Band 7 family BRM78_18650 PF12221 Bacterial membrane protein N terminal BRM78_18650 PF01145 SPFH domain / Band 7 family BRM78_18655 PF00072 Response regulator receiver domain BRM78_18660 PF00226 DnaJ domain BRM78_18660 PF01556 DnaJ C terminal domain BRM78_18670 PF08534 Redoxin BRM78_18680 PF13936 Helix-turn-helix domain BRM78_18680 PF00665 Integrase core domain BRM78_18735 PF00593 TonB dependent receptor BRM78_18735 PF07715 TonB-dependent Receptor Plug Domain BRM78_18740 PF01609 Transposase DDE domain BRM78_18740 PF05598 Transposase domain (DUF772) BRM78_18745 PF04303 PrpF protein BRM78_18760 PF00330 Aconitase family (aconitate hydratase) BRM78_18760 PF00694 Aconitase C-terminal domain BRM78_18765 PF00285 Citrate synthase, C-terminal domain BRM78_18775 PF00158 Sigma-54 interaction domain BRM78_18775 PF06506 Propionate catabolism activator BRM78_18775 PF02954 Bacterial regulatory protein, Fis family BRM78_18805 PF09115 DNA polymerase III, delta subunit, C terminal BRM78_18810 PF02618 YceG-like family BRM78_18815 PF04715 Anthranilate synthase component I, N terminal region BRM78_18815 PF00425 chorismate binding enzyme BRM78_18820 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM78_18820 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM78_18825 PF00550 Phosphopantetheine attachment site BRM78_18835 PF00698 Acyl transferase domain BRM78_18845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM78_18845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM78_18850 PF01783 Ribosomal L32p protein family BRM78_18855 PF02620 Large ribosomal RNA subunit accumulation protein YceD BRM78_18860 PF02545 Maf-like protein BRM78_18880 PF09704 CRISPR-associated protein (Cas_Cas5) BRM78_18900 PF01867 CRISPR associated protein Cas1 BRM78_18905 PF09827 CRISPR associated protein Cas2 BRM78_18945 PF07715 TonB-dependent Receptor Plug Domain BRM78_18945 PF00593 TonB dependent receptor BRM78_18960 PF07702 UTRA domain BRM78_18960 PF00392 Bacterial regulatory proteins, gntR family BRM78_18975 PF03958 Bacterial type II/III secretion system short domain BRM78_18975 PF00263 Bacterial type II and III secretion system protein BRM78_18985 PF10741 Type II secretion system (T2SS), protein M subtype b BRM78_18990 PF05137 Fimbrial assembly protein (PilN) BRM78_18995 PF03934 Type II secretion system (T2SS), protein K BRM78_19005 PF07963 Prokaryotic N-terminal methylation motif BRM78_19010 PF12019 Type II transport protein GspH BRM78_19015 PF08334 Type II secretion system (T2SS), protein G BRM78_19020 PF00482 Type II secretion system (T2SS), protein F BRM78_19030 PF00437 Type II/IV secretion system protein BRM78_19030 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM78_19050 PF03895 YadA-like membrane anchor domain BRM78_19050 PF13018 Extended Signal Peptide of Type V secretion system BRM78_19050 PF05658 Head domain of trimeric autotransporter adhesin BRM78_19050 PF05662 Coiled stalk of trimeric autotransporter adhesin BRM78_19060 PF02769 AIR synthase related protein, C-terminal domain BRM78_19060 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BRM78_19060 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BRM78_19065 PF10411 Disulfide bond isomerase protein N-terminus BRM78_19065 PF13098 Thioredoxin-like domain BRM78_19070 PF00589 Phage integrase family BRM78_19070 PF02899 Phage integrase, N-terminal SAM-like domain BRM78_19085 PF05598 Transposase domain (DUF772) BRM78_19085 PF01609 Transposase DDE domain BRM78_19095 PF03739 Lipopolysaccharide export system permease LptF/LptG BRM78_19105 PF02789 Cytosol aminopeptidase family, N-terminal domain BRM78_19105 PF00883 Cytosol aminopeptidase family, catalytic domain BRM78_19120 PF10458 Valyl tRNA synthetase tRNA binding arm BRM78_19120 PF08264 Anticodon-binding domain of tRNA BRM78_19120 PF00133 tRNA synthetases class I (I, L, M and V) BRM78_19170 PF00544 Pectate lyase BRM78_19175 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BRM78_19175 PF01464 Transglycosylase SLT domain BRM78_19190 PF05598 Transposase domain (DUF772) BRM78_19190 PF01609 Transposase DDE domain BRM78_19215 PF01066 CDP-alcohol phosphatidyltransferase BRM78_19225 PF03129 Anticodon binding domain BRM78_19225 PF04073 Aminoacyl-tRNA editing domain BRM78_19225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM78_19230 PF00816 H-NS histone family BRM78_19240 PF02405 Permease MlaE BRM78_19245 PF00005 ABC transporter BRM78_19250 PF03886 ABC-type transport auxiliary lipoprotein component BRM78_19250 PF02470 MlaD protein BRM78_19275 PF05045 Rhamnan synthesis protein F BRM78_19275 PF14307 Glycosyltransferase WbsX BRM78_19280 PF01144 Coenzyme A transferase BRM78_19285 PF01144 Coenzyme A transferase BRM78_19290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM78_19290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM78_19290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM78_19290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM78_19295 PF00483 Nucleotidyl transferase BRM78_19295 PF01050 Mannose-6-phosphate isomerase BRM78_19300 PF04321 RmlD substrate binding domain BRM78_19305 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BRM78_19310 PF00483 Nucleotidyl transferase BRM78_19315 PF16363 GDP-mannose 4,6 dehydratase BRM78_19320 PF01012 Electron transfer flavoprotein domain BRM78_19325 PF01012 Electron transfer flavoprotein domain BRM78_19325 PF00766 Electron transfer flavoprotein FAD-binding domain BRM78_19335 PF00005 ABC transporter BRM78_19345 PF00872 Transposase, Mutator family BRM78_19385 PF01370 NAD dependent epimerase/dehydratase family BRM78_19395 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM78_19400 PF00571 CBS domain BRM78_19400 PF00291 Pyridoxal-phosphate dependent enzyme BRM78_19420 PF00437 Type II/IV secretion system protein BRM78_19425 PF13417 Glutathione S-transferase, N-terminal domain BRM78_19440 PF00271 Helicase conserved C-terminal domain BRM78_19440 PF00270 DEAD/DEAH box helicase BRM78_19450 PF01242 6-pyruvoyl tetrahydropterin synthase BRM78_19465 PF13185 GAF domain BRM78_19475 PF13419 Haloacid dehalogenase-like hydrolase BRM78_19480 PF00817 impB/mucB/samB family BRM78_19480 PF11799 impB/mucB/samB family C-terminal domain BRM78_19490 PF07977 FabA-like domain BRM78_19495 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM78_19495 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM78_19505 PF01432 Peptidase family M3 BRM78_19520 PF00394 Multicopper oxidase BRM78_19520 PF07731 Multicopper oxidase BRM78_19520 PF07732 Multicopper oxidase BRM78_19525 PF05275 Copper resistance protein B precursor (CopB) BRM78_19530 PF01609 Transposase DDE domain BRM78_19530 PF05598 Transposase domain (DUF772) BRM78_19535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM78_19565 PF01380 SIS domain BRM78_19570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM78_19605 PF12804 MobA-like NTP transferase domain BRM78_19605 PF14602 Hexapeptide repeat of succinyl-transferase BRM78_19605 PF00132 Bacterial transferase hexapeptide (six repeats) BRM78_19620 PF01817 Chorismate mutase type II BRM78_19625 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BRM78_19630 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM78_19630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM78_19635 PF00231 ATP synthase BRM78_19640 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM78_19640 PF00306 ATP synthase alpha/beta chain, C terminal domain BRM78_19640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM78_19645 PF00213 ATP synthase delta (OSCP) subunit BRM78_19650 PF00430 ATP synthase B/B' CF(0) BRM78_19655 PF00137 ATP synthase subunit C BRM78_19660 PF00119 ATP synthase A chain BRM78_19680 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_19680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRM78_19690 PF02817 e3 binding domain BRM78_19690 PF00364 Biotin-requiring enzyme BRM78_19690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRM78_19715 PF03180 NLPA lipoprotein BRM78_19720 PF00528 Binding-protein-dependent transport system inner membrane component BRM78_19725 PF00005 ABC transporter BRM78_19725 PF09383 NIL domain BRM78_19730 PF00892 EamA-like transporter family BRM78_19735 PF04461 Protein of unknown function (DUF520) BRM78_19765 PF13419 Haloacid dehalogenase-like hydrolase BRM78_19770 PF00849 RNA pseudouridylate synthase BRM78_19770 PF01479 S4 domain BRM78_19775 PF08468 Methyltransferase small domain N-terminal BRM78_19775 PF05175 Methyltransferase small domain BRM78_19795 PF07995 Glucose / Sorbosone dehydrogenase BRM78_19810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_19810 PF00512 His Kinase A (phospho-acceptor) domain BRM78_19810 PF00989 PAS fold BRM78_19830 PF01168 Alanine racemase, N-terminal domain BRM78_19830 PF00842 Alanine racemase, C-terminal domain BRM78_19835 PF01266 FAD dependent oxidoreductase BRM78_19840 PF01037 Lrp/AsnC ligand binding domain BRM78_19850 PF01641 SelR domain BRM78_19860 PF01618 MotA/TolQ/ExbB proton channel family BRM78_19865 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRM78_19865 PF00691 OmpA family BRM78_19885 PF00486 Transcriptional regulatory protein, C terminal BRM78_19885 PF00072 Response regulator receiver domain BRM78_19890 PF00512 His Kinase A (phospho-acceptor) domain BRM78_19890 PF08448 PAS fold BRM78_19890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_19890 PF13188 PAS domain BRM78_19890 PF00072 Response regulator receiver domain BRM78_19900 PF00082 Subtilase family BRM78_19900 PF04151 Bacterial pre-peptidase C-terminal domain BRM78_19915 PF01061 ABC-2 type transporter BRM78_19920 PF00005 ABC transporter BRM78_19925 PF00999 Sodium/hydrogen exchanger family BRM78_19940 PF02469 Fasciclin domain BRM78_19950 PF03167 Uracil DNA glycosylase superfamily BRM78_19960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRM78_19970 PF03358 NADPH-dependent FMN reductase BRM78_19975 PF00248 Aldo/keto reductase family BRM78_19990 PF01431 Peptidase family M13 BRM78_19990 PF05649 Peptidase family M13 BRM78_20010 PF13520 Amino acid permease BRM78_20025 PF02743 Cache domain BRM78_20025 PF00672 HAMP domain BRM78_20025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_20025 PF06580 Histidine kinase BRM78_20055 PF00072 Response regulator receiver domain BRM78_20055 PF00158 Sigma-54 interaction domain BRM78_20055 PF02954 Bacterial regulatory protein, Fis family BRM78_20070 PF01654 Cytochrome bd terminal oxidase subunit I BRM78_20075 PF02322 Cytochrome bd terminal oxidase subunit II BRM78_20130 PF07715 TonB-dependent Receptor Plug Domain BRM78_20130 PF00593 TonB dependent receptor BRM78_20145 PF00005 ABC transporter BRM78_20230 PF00140 Sigma-70 factor, region 1.2 BRM78_20230 PF04539 Sigma-70 region 3 BRM78_20230 PF04546 Sigma-70, non-essential region BRM78_20230 PF04545 Sigma-70, region 4 BRM78_20230 PF03979 Sigma-70 factor, region 1.1 BRM78_20230 PF04542 Sigma-70 region 2 BRM78_20235 PF02580 D-Tyr-tRNA(Tyr) deacylase BRM78_20240 PF03279 Bacterial lipid A biosynthesis acyltransferase BRM78_20255 PF00925 GTP cyclohydrolase II BRM78_20275 PF00535 Glycosyl transferase family 2 BRM78_20290 PF01189 16S rRNA methyltransferase RsmB/F BRM78_20290 PF01029 NusB family BRM78_20295 PF00551 Formyl transferase BRM78_20295 PF02911 Formyl transferase, C-terminal domain BRM78_20300 PF01327 Polypeptide deformylase BRM78_20305 PF01476 LysM domain BRM78_20310 PF02481 DNA recombination-mediator protein A BRM78_20310 PF17782 DprA winged helix domain BRM78_20315 PF04361 Protein of unknown function (DUF494) BRM78_20320 PF00114 Pilin (bacterial filament) BRM78_20320 PF07963 Prokaryotic N-terminal methylation motif BRM78_20330 PF01131 DNA topoisomerase BRM78_20330 PF13368 Topoisomerase C-terminal repeat BRM78_20330 PF01751 Toprim domain BRM78_20335 PF01300 Telomere recombination BRM78_20360 PF01343 Peptidase family S49 BRM78_20365 PF01554 MatE BRM78_20390 PF00271 Helicase conserved C-terminal domain BRM78_20390 PF17764 3′ DNA-binding domain (3′BD) BRM78_20390 PF00270 DEAD/DEAH box helicase BRM78_20390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BRM78_20390 PF18074 Primosomal protein N C-terminal domain BRM78_20425 PF03091 CutA1 divalent ion tolerance protein BRM78_20430 PF11412 Disulphide bond corrector protein DsbC BRM78_20430 PF02683 Cytochrome C biogenesis protein transmembrane region BRM78_20445 PF01220 Dehydroquinase class II BRM78_20450 PF00364 Biotin-requiring enzyme BRM78_20460 PF02785 Biotin carboxylase C-terminal domain BRM78_20460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM78_20460 PF00289 Biotin carboxylase, N-terminal domain BRM78_20505 PF01381 Helix-turn-helix BRM78_20520 PF02954 Bacterial regulatory protein, Fis family BRM78_20535 PF00782 Dual specificity phosphatase, catalytic domain BRM78_20540 PF12146 Serine aminopeptidase, S33 BRM78_20540 PF12147 Putative methyltransferase BRM78_20550 PF12146 Serine aminopeptidase, S33 BRM78_20550 PF12147 Putative methyltransferase BRM78_20560 PF01808 AICARFT/IMPCHase bienzyme BRM78_20560 PF02142 MGS-like domain BRM78_20565 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system BRM78_20575 PF02844 Phosphoribosylglycinamide synthetase, N domain BRM78_20575 PF02843 Phosphoribosylglycinamide synthetase, C domain BRM78_20575 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BRM78_20580 PF12704 MacB-like periplasmic core domain BRM78_20580 PF02687 FtsX-like permease family BRM78_20580 PF00005 ABC transporter BRM78_20590 PF12805 FUSC-like inner membrane protein yccS BRM78_20605 PF07690 Major Facilitator Superfamily BRM78_20630 PF03186 CobD/Cbib protein BRM78_20630 PF17113 Regulatory signalling modulator protein AmpE BRM78_20635 PF00293 NUDIX domain BRM78_20635 PF09297 NADH pyrophosphatase zinc ribbon domain BRM78_20635 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BRM78_20645 PF01521 Iron-sulphur cluster biosynthesis BRM78_20665 PF00486 Transcriptional regulatory protein, C terminal BRM78_20665 PF00072 Response regulator receiver domain BRM78_20670 PF00072 Response regulator receiver domain BRM78_20670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_20670 PF00512 His Kinase A (phospho-acceptor) domain BRM78_20670 PF00672 HAMP domain BRM78_20670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM78_20670 PF01627 Hpt domain BRM78_20705 PF00579 tRNA synthetases class I (W and Y) BRM78_20710 PF04225 Opacity-associated protein A LysM-like domain BRM78_20710 PF01551 Peptidase family M23 BRM78_20715 PF03702 Anhydro-N-acetylmuramic acid kinase BRM78_20725 PF07690 Major Facilitator Superfamily BRM78_20730 PF03372 Endonuclease/Exonuclease/phosphatase family BRM78_20735 PF00156 Phosphoribosyl transferase domain BRM78_20745 PF13614 AAA domain BRM78_20750 PF17762 HTH domain found in ParB protein BRM78_20750 PF02195 ParB-like nuclease domain BRM78_20760 PF01370 NAD dependent epimerase/dehydratase family BRM78_20765 PF00535 Glycosyl transferase family 2 BRM78_20780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM78_20780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM78_20780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM78_20780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM78_20785 PF00692 dUTPase BRM78_20790 PF04127 DNA / pantothenate metabolism flavoprotein BRM78_20790 PF02441 Flavoprotein BRM78_20795 PF04002 RadC-like JAB domain BRM78_20800 PF00750 tRNA synthetases class I (R) BRM78_20800 PF03485 Arginyl tRNA synthetase N terminal domain BRM78_20800 PF05746 DALR anticodon binding domain BRM78_20815 PF00106 short chain dehydrogenase BRM78_20845 PF02627 Carboxymuconolactone decarboxylase family BRM78_20850 PF12146 Serine aminopeptidase, S33 BRM78_20855 PF00206 Lyase BRM78_20855 PF10397 Adenylosuccinate lyase C-terminus BRM78_20870 PF00775 Dioxygenase BRM78_20870 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BRM78_20875 PF00108 Thiolase, N-terminal domain BRM78_20875 PF02803 Thiolase, C-terminal domain BRM78_20905 PF00268 Ribonucleotide reductase, small chain BRM78_20915 PF00317 Ribonucleotide reductase, all-alpha domain BRM78_20915 PF02867 Ribonucleotide reductase, barrel domain BRM78_20915 PF03477 ATP cone domain BRM78_20925 PF00583 Acetyltransferase (GNAT) family BRM78_20925 PF13380 CoA binding domain BRM78_20925 PF13607 Succinyl-CoA ligase like flavodoxin domain BRM78_20935 PF00571 CBS domain BRM78_20935 PF01769 Divalent cation transporter BRM78_20935 PF03448 MgtE intracellular N domain BRM78_20940 PF02254 TrkA-N domain BRM78_20940 PF00999 Sodium/hydrogen exchanger family BRM78_20955 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRM78_20955 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRM78_20960 PF00723 Glycosyl hydrolases family 15 BRM78_20975 PF05166 YcgL domain BRM78_20980 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM78_20980 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM78_20990 PF00535 Glycosyl transferase family 2 BRM78_21020 PF00155 Aminotransferase class I and II BRM78_21025 PF04055 Radical SAM superfamily BRM78_21025 PF06968 Biotin and Thiamin Synthesis associated domain BRM78_21035 PF01040 UbiA prenyltransferase family BRM78_21050 PF01594 AI-2E family transporter BRM78_21060 PF02789 Cytosol aminopeptidase family, N-terminal domain BRM78_21060 PF00883 Cytosol aminopeptidase family, catalytic domain BRM78_21070 PF08281 Sigma-70, region 4 BRM78_21070 PF04542 Sigma-70 region 2 BRM78_21075 PF00199 Catalase BRM78_21095 PF00892 EamA-like transporter family BRM78_21120 PF00753 Metallo-beta-lactamase superfamily BRM78_21125 PF00579 tRNA synthetases class I (W and Y) BRM78_21130 PF05532 CsbD-like BRM78_21145 PF00491 Arginase family BRM78_21170 PF02223 Thymidylate kinase BRM78_21185 PF03309 Type III pantothenate kinase BRM78_21190 PF02237 Biotin protein ligase C terminal domain BRM78_21190 PF03099 Biotin/lipoate A/B protein ligase family BRM78_21190 PF08279 HTH domain BRM78_21215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_21215 PF00672 HAMP domain BRM78_21215 PF00512 His Kinase A (phospho-acceptor) domain BRM78_21220 PF00072 Response regulator receiver domain BRM78_21220 PF00486 Transcriptional regulatory protein, C terminal BRM78_21230 PF01207 Dihydrouridine synthase (Dus) BRM78_21255 PF00199 Catalase BRM78_21255 PF06628 Catalase-related immune-responsive BRM78_21260 PF13533 Biotin-lipoyl like BRM78_21280 PF06733 DEAD_2 BRM78_21280 PF13307 Helicase C-terminal domain BRM78_21290 PF08501 Shikimate dehydrogenase substrate binding domain BRM78_21290 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BRM78_21290 PF01488 Shikimate / quinate 5-dehydrogenase BRM78_21305 PF00175 Oxidoreductase NAD-binding domain BRM78_21305 PF00258 Flavodoxin BRM78_21305 PF00667 FAD binding domain BRM78_21315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM78_21315 PF03466 LysR substrate binding domain BRM78_21330 PF00490 Delta-aminolevulinic acid dehydratase BRM78_21355 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRM78_21355 PF00326 Prolyl oligopeptidase family BRM78_21365 PF00043 Glutathione S-transferase, C-terminal domain BRM78_21365 PF02798 Glutathione S-transferase, N-terminal domain BRM78_21390 PF04820 Tryptophan halogenase BRM78_21405 PF00005 ABC transporter BRM78_21415 PF01381 Helix-turn-helix BRM78_21425 PF02583 Metal-sensitive transcriptional repressor BRM78_21430 PF01545 Cation efflux family BRM78_21435 PF01383 CpcD/allophycocyanin linker domain BRM78_21435 PF00175 Oxidoreductase NAD-binding domain BRM78_21440 PF00005 ABC transporter BRM78_21445 PF01061 ABC-2 type transporter BRM78_21455 PF08546 Ketopantoate reductase PanE/ApbA C terminal BRM78_21455 PF02558 Ketopantoate reductase PanE/ApbA BRM78_21555 PF03109 ABC1 family BRM78_21565 PF00849 RNA pseudouridylate synthase BRM78_21575 PF00472 RF-1 domain BRM78_21595 PF01432 Peptidase family M3 BRM78_21625 PF05336 L-rhamnose mutarotase BRM78_21630 PF07690 Major Facilitator Superfamily BRM78_21635 PF01614 Bacterial transcriptional regulator BRM78_21635 PF09339 IclR helix-turn-helix domain BRM78_21640 PF02659 Putative manganese efflux pump BRM78_21645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_21645 PF00512 His Kinase A (phospho-acceptor) domain BRM78_21660 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BRM78_21660 PF06165 Glycosyltransferase family 36 BRM78_21685 PF01011 PQQ enzyme repeat BRM78_21685 PF13360 PQQ-like domain BRM78_21685 PF13570 PQQ-like domain BRM78_21735 PF05598 Transposase domain (DUF772) BRM78_21735 PF01609 Transposase DDE domain BRM78_21770 PF00005 ABC transporter BRM78_21775 PF02405 Permease MlaE BRM78_21780 PF02470 MlaD protein BRM78_21785 PF05494 MlaC protein BRM78_21795 PF04333 MlaA lipoprotein BRM78_21820 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BRM78_21820 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BRM78_21820 PF06827 Zinc finger found in FPG and IleRS BRM78_21870 PF00360 Phytochrome region BRM78_21870 PF13426 PAS domain BRM78_21870 PF08446 PAS fold BRM78_21870 PF01590 GAF domain BRM78_21875 PF01126 Heme oxygenase BRM78_21880 PF07690 Major Facilitator Superfamily BRM78_21885 PF01263 Aldose 1-epimerase BRM78_21890 PF01609 Transposase DDE domain BRM78_21890 PF05598 Transposase domain (DUF772) BRM78_21905 PF02810 SEC-C motif BRM78_21915 PF00150 Cellulase (glycosyl hydrolase family 5) BRM78_21925 PF00150 Cellulase (glycosyl hydrolase family 5) BRM78_21935 PF00150 Cellulase (glycosyl hydrolase family 5) BRM78_21945 PF08240 Alcohol dehydrogenase GroES-like domain BRM78_21945 PF00107 Zinc-binding dehydrogenase BRM78_21990 PF01037 Lrp/AsnC ligand binding domain BRM78_21995 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BRM78_22010 PF00657 GDSL-like Lipase/Acylhydrolase BRM78_22040 PF01553 Acyltransferase BRM78_22055 PF00356 Bacterial regulatory proteins, lacI family BRM78_22070 PF04820 Tryptophan halogenase BRM78_22075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BRM78_22080 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BRM78_22085 PF04337 Protein of unknown function, DUF480 BRM78_22100 PF00580 UvrD/REP helicase N-terminal domain BRM78_22100 PF13361 UvrD-like helicase C-terminal domain BRM78_22105 PF00265 Thymidine kinase BRM78_22115 PF04349 Periplasmic glucan biosynthesis protein, MdoG BRM78_22135 PF12697 Alpha/beta hydrolase family BRM78_22145 PF13649 Methyltransferase domain BRM78_22165 PF00291 Pyridoxal-phosphate dependent enzyme BRM78_22180 PF13932 GidA associated domain BRM78_22180 PF01134 Glucose inhibited division protein A BRM78_22220 PF04717 Type VI secretion system, phage-baseplate injector BRM78_22220 PF16671 Actin cross-linking domain BRM78_22225 PF05598 Transposase domain (DUF772) BRM78_22230 PF17810 Arginine decarboxylase helical bundle domain BRM78_22230 PF17944 Arginine decarboxylase C-terminal helical extension BRM78_22230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRM78_22235 PF17284 Spermidine synthase tetramerisation domain BRM78_22270 PF00543 Nitrogen regulatory protein P-II BRM78_22275 PF04380 Membrane fusogenic activity BRM78_22280 PF01078 Magnesium chelatase, subunit ChlI BRM78_22280 PF13335 Magnesium chelatase, subunit ChlI C-terminal BRM78_22335 PF11896 Domain of unknown function (DUF3416) BRM78_22335 PF00128 Alpha amylase, catalytic domain BRM78_22340 PF00128 Alpha amylase, catalytic domain BRM78_22340 PF16657 Maltogenic Amylase, C-terminal domain BRM78_22345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM78_22345 PF02806 Alpha amylase, C-terminal all-beta domain BRM78_22345 PF00128 Alpha amylase, catalytic domain BRM78_22375 PF00356 Bacterial regulatory proteins, lacI family BRM78_22385 PF05598 Transposase domain (DUF772) BRM78_22415 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM78_22415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BRM78_22420 PF04898 Glutamate synthase central domain BRM78_22420 PF00310 Glutamine amidotransferases class-II BRM78_22420 PF01645 Conserved region in glutamate synthase BRM78_22420 PF01493 GXGXG motif BRM78_22485 PF00270 DEAD/DEAH box helicase BRM78_22485 PF09369 Domain of unknown function (DUF1998) BRM78_22485 PF00271 Helicase conserved C-terminal domain BRM78_22490 PF03006 Haemolysin-III related BRM78_22510 PF08845 Toxin SymE, type I toxin-antitoxin system BRM78_22535 PF00005 ABC transporter BRM78_22545 PF13533 Biotin-lipoyl like BRM78_22580 PF13344 Haloacid dehalogenase-like hydrolase BRM78_22580 PF00293 NUDIX domain BRM78_22600 PF13936 Helix-turn-helix domain BRM78_22600 PF00665 Integrase core domain BRM78_22625 PF01609 Transposase DDE domain BRM78_22625 PF05598 Transposase domain (DUF772) BRM78_22635 PF08338 Domain of unknown function (DUF1731) BRM78_22635 PF01370 NAD dependent epimerase/dehydratase family BRM78_22645 PF00512 His Kinase A (phospho-acceptor) domain BRM78_22645 PF08521 Two-component sensor kinase N-terminal BRM78_22645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_22655 PF00595 PDZ domain BRM78_22685 PF05819 NolX protein BRM78_22690 PF05598 Transposase domain (DUF772) BRM78_22690 PF01609 Transposase DDE domain BRM78_22700 PF05598 Transposase domain (DUF772) BRM78_22700 PF01609 Transposase DDE domain BRM78_22755 PF01313 Bacterial export proteins, family 3 BRM78_22760 PF00813 FliP family BRM78_22775 PF00771 FHIPEP family BRM78_22780 PF01312 FlhB HrpN YscU SpaS Family BRM78_22795 PF01514 Secretory protein of YscJ/FliF family BRM78_22810 PF18269 T3SS EscN ATPase C-terminal domain BRM78_22810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM78_22810 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM78_22820 PF01311 Bacterial export proteins, family 1 BRM78_22835 PF01464 Transglycosylase SLT domain BRM78_22860 PF12795 Mechanosensitive ion channel porin domain BRM78_22860 PF12794 Mechanosensitive ion channel inner membrane domain 1 BRM78_22860 PF00924 Mechanosensitive ion channel BRM78_22875 PF03109 ABC1 family BRM78_22885 PF05661 Protein of unknown function (DUF808) BRM78_22895 PF00990 Diguanylate cyclase, GGDEF domain BRM78_22895 PF00072 Response regulator receiver domain BRM78_22900 PF08323 Starch synthase catalytic domain BRM78_22900 PF00534 Glycosyl transferases group 1 BRM78_22905 PF00128 Alpha amylase, catalytic domain BRM78_22905 PF02806 Alpha amylase, C-terminal all-beta domain BRM78_22905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM78_22910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM78_22910 PF11941 Domain of unknown function (DUF3459) BRM78_22910 PF00128 Alpha amylase, catalytic domain BRM78_22915 PF02446 4-alpha-glucanotransferase BRM78_22920 PF00128 Alpha amylase, catalytic domain BRM78_22930 PF00128 Alpha amylase, catalytic domain BRM78_22930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM78_22935 PF13460 NAD(P)H-binding BRM78_22945 PF03150 Di-haem cytochrome c peroxidase BRM78_23035 PF06903 VirK protein BRM78_23050 PF00270 DEAD/DEAH box helicase BRM78_23050 PF00271 Helicase conserved C-terminal domain BRM78_23060 PF01609 Transposase DDE domain BRM78_23060 PF05598 Transposase domain (DUF772) BRM78_23100 PF05598 Transposase domain (DUF772) BRM78_23110 PF00005 ABC transporter BRM78_23115 PF01609 Transposase DDE domain BRM78_23115 PF05598 Transposase domain (DUF772) BRM78_23125 PF00294 pfkB family carbohydrate kinase BRM78_23135 PF07055 Enoyl reductase FAD binding domain BRM78_23135 PF12241 Trans-2-enoyl-CoA reductase catalytic region BRM78_23135 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BRM78_23150 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BRM78_23155 PF01070 FMN-dependent dehydrogenase BRM78_23160 PF05598 Transposase domain (DUF772) BRM78_23160 PF01609 Transposase DDE domain BRM78_23175 PF00593 TonB dependent receptor BRM78_23175 PF07715 TonB-dependent Receptor Plug Domain BRM78_23180 PF00155 Aminotransferase class I and II BRM78_23185 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BRM78_23195 PF13091 PLD-like domain BRM78_23195 PF13396 Phospholipase_D-nuclease N-terminal BRM78_23205 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BRM78_23210 PF02472 Biopolymer transport protein ExbD/TolR BRM78_23215 PF02472 Biopolymer transport protein ExbD/TolR BRM78_23220 PF01618 MotA/TolQ/ExbB proton channel family BRM78_23225 PF03544 Gram-negative bacterial TonB protein C-terminal BRM78_23235 PF01435 Peptidase family M48 BRM78_23245 PF00986 DNA gyrase B subunit, carboxyl terminus BRM78_23245 PF01751 Toprim domain BRM78_23245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM78_23245 PF18053 DNA gyrase B subunit insert domain BRM78_23245 PF00204 DNA gyrase B BRM78_23250 PF02463 RecF/RecN/SMC N terminal domain BRM78_23260 PF00712 DNA polymerase III beta subunit, N-terminal domain BRM78_23260 PF02767 DNA polymerase III beta subunit, central domain BRM78_23260 PF02768 DNA polymerase III beta subunit, C-terminal domain BRM78_23265 PF00308 Bacterial dnaA protein BRM78_23265 PF08299 Bacterial dnaA protein helix-turn-helix BRM78_23265 PF11638 DnaA N-terminal domain