locus-tag class description BRM88_00005 PF00308 Bacterial dnaA protein BRM88_00005 PF08299 Bacterial dnaA protein helix-turn-helix BRM88_00005 PF11638 DnaA N-terminal domain BRM88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BRM88_00010 PF02767 DNA polymerase III beta subunit, central domain BRM88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BRM88_00020 PF02463 RecF/RecN/SMC N terminal domain BRM88_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_00025 PF00204 DNA gyrase B BRM88_00025 PF00986 DNA gyrase B subunit, carboxyl terminus BRM88_00025 PF18053 DNA gyrase B subunit insert domain BRM88_00025 PF01751 Toprim domain BRM88_00035 PF01435 Peptidase family M48 BRM88_00045 PF03544 Gram-negative bacterial TonB protein C-terminal BRM88_00050 PF01618 MotA/TolQ/ExbB proton channel family BRM88_00055 PF02472 Biopolymer transport protein ExbD/TolR BRM88_00060 PF02472 Biopolymer transport protein ExbD/TolR BRM88_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BRM88_00075 PF13396 Phospholipase_D-nuclease N-terminal BRM88_00075 PF13091 PLD-like domain BRM88_00085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BRM88_00090 PF00155 Aminotransferase class I and II BRM88_00095 PF07715 TonB-dependent Receptor Plug Domain BRM88_00095 PF00593 TonB dependent receptor BRM88_00110 PF05598 Transposase domain (DUF772) BRM88_00110 PF01609 Transposase DDE domain BRM88_00115 PF01070 FMN-dependent dehydrogenase BRM88_00120 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BRM88_00135 PF12241 Trans-2-enoyl-CoA reductase catalytic region BRM88_00135 PF07055 Enoyl reductase FAD binding domain BRM88_00135 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BRM88_00145 PF00294 pfkB family carbohydrate kinase BRM88_00155 PF05598 Transposase domain (DUF772) BRM88_00155 PF01609 Transposase DDE domain BRM88_00160 PF00005 ABC transporter BRM88_00170 PF05598 Transposase domain (DUF772) BRM88_00210 PF01609 Transposase DDE domain BRM88_00210 PF05598 Transposase domain (DUF772) BRM88_00220 PF00270 DEAD/DEAH box helicase BRM88_00220 PF00271 Helicase conserved C-terminal domain BRM88_00235 PF06903 VirK protein BRM88_00325 PF03150 Di-haem cytochrome c peroxidase BRM88_00335 PF13460 NAD(P)H-binding BRM88_00340 PF00128 Alpha amylase, catalytic domain BRM88_00340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_00350 PF00128 Alpha amylase, catalytic domain BRM88_00355 PF02446 4-alpha-glucanotransferase BRM88_00360 PF11941 Domain of unknown function (DUF3459) BRM88_00360 PF00128 Alpha amylase, catalytic domain BRM88_00360 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_00365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_00365 PF00128 Alpha amylase, catalytic domain BRM88_00365 PF02806 Alpha amylase, C-terminal all-beta domain BRM88_00370 PF08323 Starch synthase catalytic domain BRM88_00370 PF00534 Glycosyl transferases group 1 BRM88_00375 PF00072 Response regulator receiver domain BRM88_00375 PF00990 Diguanylate cyclase, GGDEF domain BRM88_00385 PF05661 Protein of unknown function (DUF808) BRM88_00395 PF03109 ABC1 family BRM88_00410 PF12794 Mechanosensitive ion channel inner membrane domain 1 BRM88_00410 PF12795 Mechanosensitive ion channel porin domain BRM88_00410 PF00924 Mechanosensitive ion channel BRM88_00435 PF01464 Transglycosylase SLT domain BRM88_00450 PF01311 Bacterial export proteins, family 1 BRM88_00460 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM88_00460 PF18269 T3SS EscN ATPase C-terminal domain BRM88_00460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_00475 PF01514 Secretory protein of YscJ/FliF family BRM88_00490 PF01312 FlhB HrpN YscU SpaS Family BRM88_00495 PF00771 FHIPEP family BRM88_00510 PF00813 FliP family BRM88_00515 PF01313 Bacterial export proteins, family 3 BRM88_00570 PF05598 Transposase domain (DUF772) BRM88_00570 PF01609 Transposase DDE domain BRM88_00580 PF05598 Transposase domain (DUF772) BRM88_00580 PF01609 Transposase DDE domain BRM88_00585 PF05819 NolX protein BRM88_00615 PF00595 PDZ domain BRM88_00625 PF00512 His Kinase A (phospho-acceptor) domain BRM88_00625 PF08521 Two-component sensor kinase N-terminal BRM88_00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_00635 PF01370 NAD dependent epimerase/dehydratase family BRM88_00635 PF08338 Domain of unknown function (DUF1731) BRM88_00645 PF01609 Transposase DDE domain BRM88_00645 PF05598 Transposase domain (DUF772) BRM88_00670 PF13936 Helix-turn-helix domain BRM88_00670 PF00665 Integrase core domain BRM88_00690 PF13344 Haloacid dehalogenase-like hydrolase BRM88_00690 PF00293 NUDIX domain BRM88_00725 PF13533 Biotin-lipoyl like BRM88_00735 PF00005 ABC transporter BRM88_00760 PF08845 Toxin SymE, type I toxin-antitoxin system BRM88_00780 PF03006 Haemolysin-III related BRM88_00785 PF00271 Helicase conserved C-terminal domain BRM88_00785 PF00270 DEAD/DEAH box helicase BRM88_00785 PF09369 Domain of unknown function (DUF1998) BRM88_00845 PF01645 Conserved region in glutamate synthase BRM88_00845 PF01493 GXGXG motif BRM88_00845 PF00310 Glutamine amidotransferases class-II BRM88_00845 PF04898 Glutamate synthase central domain BRM88_00850 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BRM88_00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_00890 PF05598 Transposase domain (DUF772) BRM88_00900 PF00356 Bacterial regulatory proteins, lacI family BRM88_00930 PF02806 Alpha amylase, C-terminal all-beta domain BRM88_00930 PF00128 Alpha amylase, catalytic domain BRM88_00930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_00935 PF00128 Alpha amylase, catalytic domain BRM88_00935 PF16657 Maltogenic Amylase, C-terminal domain BRM88_00940 PF00128 Alpha amylase, catalytic domain BRM88_00940 PF11896 Domain of unknown function (DUF3416) BRM88_00995 PF01078 Magnesium chelatase, subunit ChlI BRM88_00995 PF13335 Magnesium chelatase, subunit ChlI C-terminal BRM88_01000 PF04380 Membrane fusogenic activity BRM88_01005 PF00543 Nitrogen regulatory protein P-II BRM88_01040 PF17284 Spermidine synthase tetramerisation domain BRM88_01045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRM88_01045 PF17944 Arginine decarboxylase C-terminal helical extension BRM88_01045 PF17810 Arginine decarboxylase helical bundle domain BRM88_01050 PF05598 Transposase domain (DUF772) BRM88_01100 PF01134 Glucose inhibited division protein A BRM88_01100 PF13932 GidA associated domain BRM88_01115 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_01135 PF13649 Methyltransferase domain BRM88_01145 PF12697 Alpha/beta hydrolase family BRM88_01165 PF04349 Periplasmic glucan biosynthesis protein, MdoG BRM88_01175 PF00265 Thymidine kinase BRM88_01180 PF00580 UvrD/REP helicase N-terminal domain BRM88_01180 PF13361 UvrD-like helicase C-terminal domain BRM88_01195 PF04337 Protein of unknown function, DUF480 BRM88_01200 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BRM88_01205 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BRM88_01210 PF04820 Tryptophan halogenase BRM88_01225 PF00356 Bacterial regulatory proteins, lacI family BRM88_01240 PF01553 Acyltransferase BRM88_01270 PF00657 GDSL-like Lipase/Acylhydrolase BRM88_01285 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BRM88_01290 PF01037 Lrp/AsnC ligand binding domain BRM88_01340 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_01340 PF00107 Zinc-binding dehydrogenase BRM88_01350 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_01360 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_01370 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_01380 PF02810 SEC-C motif BRM88_01395 PF01609 Transposase DDE domain BRM88_01395 PF05598 Transposase domain (DUF772) BRM88_01400 PF01263 Aldose 1-epimerase BRM88_01405 PF07690 Major Facilitator Superfamily BRM88_01410 PF01126 Heme oxygenase BRM88_01415 PF13426 PAS domain BRM88_01415 PF00360 Phytochrome region BRM88_01415 PF01590 GAF domain BRM88_01415 PF08446 PAS fold BRM88_01465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BRM88_01465 PF06827 Zinc finger found in FPG and IleRS BRM88_01465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BRM88_01490 PF04333 MlaA lipoprotein BRM88_01500 PF05494 MlaC protein BRM88_01505 PF02470 MlaD protein BRM88_01510 PF02405 Permease MlaE BRM88_01515 PF00005 ABC transporter BRM88_01590 PF13570 PQQ-like domain BRM88_01590 PF01011 PQQ enzyme repeat BRM88_01590 PF13360 PQQ-like domain BRM88_01615 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BRM88_01615 PF06165 Glycosyltransferase family 36 BRM88_01630 PF00512 His Kinase A (phospho-acceptor) domain BRM88_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_01635 PF02659 Putative manganese efflux pump BRM88_01640 PF01614 Bacterial transcriptional regulator BRM88_01640 PF09339 IclR helix-turn-helix domain BRM88_01645 PF07690 Major Facilitator Superfamily BRM88_01650 PF05336 L-rhamnose mutarotase BRM88_01680 PF01432 Peptidase family M3 BRM88_01700 PF00472 RF-1 domain BRM88_01710 PF00849 RNA pseudouridylate synthase BRM88_01720 PF03109 ABC1 family BRM88_01735 PF01820 D-ala D-ala ligase N-terminus BRM88_01735 PF07478 D-ala D-ala ligase C-terminus BRM88_01820 PF02558 Ketopantoate reductase PanE/ApbA BRM88_01820 PF08546 Ketopantoate reductase PanE/ApbA C terminal BRM88_01830 PF01061 ABC-2 type transporter BRM88_01835 PF00005 ABC transporter BRM88_01840 PF01383 CpcD/allophycocyanin linker domain BRM88_01840 PF00175 Oxidoreductase NAD-binding domain BRM88_01845 PF01545 Cation efflux family BRM88_01850 PF02583 Metal-sensitive transcriptional repressor BRM88_01860 PF01381 Helix-turn-helix BRM88_01870 PF00005 ABC transporter BRM88_01885 PF04820 Tryptophan halogenase BRM88_01910 PF02798 Glutathione S-transferase, N-terminal domain BRM88_01910 PF00043 Glutathione S-transferase, C-terminal domain BRM88_01920 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRM88_01920 PF00326 Prolyl oligopeptidase family BRM88_01945 PF00490 Delta-aminolevulinic acid dehydratase BRM88_01960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_01960 PF03466 LysR substrate binding domain BRM88_01970 PF00667 FAD binding domain BRM88_01970 PF00175 Oxidoreductase NAD-binding domain BRM88_01970 PF00258 Flavodoxin BRM88_01985 PF01488 Shikimate / quinate 5-dehydrogenase BRM88_01985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BRM88_01985 PF08501 Shikimate dehydrogenase substrate binding domain BRM88_01995 PF06733 DEAD_2 BRM88_01995 PF13307 Helicase C-terminal domain BRM88_02015 PF13533 Biotin-lipoyl like BRM88_02020 PF00199 Catalase BRM88_02020 PF06628 Catalase-related immune-responsive BRM88_02045 PF01207 Dihydrouridine synthase (Dus) BRM88_02055 PF00072 Response regulator receiver domain BRM88_02055 PF00486 Transcriptional regulatory protein, C terminal BRM88_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_02060 PF00672 HAMP domain BRM88_02060 PF00512 His Kinase A (phospho-acceptor) domain BRM88_02085 PF03099 Biotin/lipoate A/B protein ligase family BRM88_02085 PF08279 HTH domain BRM88_02085 PF02237 Biotin protein ligase C terminal domain BRM88_02090 PF03309 Type III pantothenate kinase BRM88_02105 PF02223 Thymidylate kinase BRM88_02130 PF00491 Arginase family BRM88_02145 PF05532 CsbD-like BRM88_02150 PF00579 tRNA synthetases class I (W and Y) BRM88_02155 PF00753 Metallo-beta-lactamase superfamily BRM88_02185 PF00892 EamA-like transporter family BRM88_02205 PF00199 Catalase BRM88_02210 PF04542 Sigma-70 region 2 BRM88_02210 PF08281 Sigma-70, region 4 BRM88_02220 PF02789 Cytosol aminopeptidase family, N-terminal domain BRM88_02220 PF00883 Cytosol aminopeptidase family, catalytic domain BRM88_02230 PF01594 AI-2E family transporter BRM88_02245 PF01040 UbiA prenyltransferase family BRM88_02255 PF06968 Biotin and Thiamin Synthesis associated domain BRM88_02255 PF04055 Radical SAM superfamily BRM88_02260 PF00155 Aminotransferase class I and II BRM88_02290 PF00535 Glycosyl transferase family 2 BRM88_02300 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_02300 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_02305 PF05166 YcgL domain BRM88_02320 PF00723 Glycosyl hydrolases family 15 BRM88_02325 PF00723 Glycosyl hydrolases family 15 BRM88_02330 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRM88_02330 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRM88_02345 PF02254 TrkA-N domain BRM88_02345 PF00999 Sodium/hydrogen exchanger family BRM88_02350 PF01769 Divalent cation transporter BRM88_02350 PF00571 CBS domain BRM88_02350 PF03448 MgtE intracellular N domain BRM88_02360 PF00583 Acetyltransferase (GNAT) family BRM88_02360 PF13380 CoA binding domain BRM88_02360 PF13607 Succinyl-CoA ligase like flavodoxin domain BRM88_02370 PF03477 ATP cone domain BRM88_02370 PF02867 Ribonucleotide reductase, barrel domain BRM88_02370 PF00317 Ribonucleotide reductase, all-alpha domain BRM88_02380 PF00268 Ribonucleotide reductase, small chain BRM88_02410 PF02803 Thiolase, C-terminal domain BRM88_02410 PF00108 Thiolase, N-terminal domain BRM88_02415 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BRM88_02415 PF00775 Dioxygenase BRM88_02430 PF10397 Adenylosuccinate lyase C-terminus BRM88_02430 PF00206 Lyase BRM88_02435 PF12146 Serine aminopeptidase, S33 BRM88_02440 PF02627 Carboxymuconolactone decarboxylase family BRM88_02465 PF00106 short chain dehydrogenase BRM88_02480 PF05746 DALR anticodon binding domain BRM88_02480 PF03485 Arginyl tRNA synthetase N terminal domain BRM88_02480 PF00750 tRNA synthetases class I (R) BRM88_02485 PF04002 RadC-like JAB domain BRM88_02490 PF04127 DNA / pantothenate metabolism flavoprotein BRM88_02490 PF02441 Flavoprotein BRM88_02495 PF00692 dUTPase BRM88_02500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM88_02500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM88_02500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM88_02500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM88_02515 PF00535 Glycosyl transferase family 2 BRM88_02520 PF01370 NAD dependent epimerase/dehydratase family BRM88_02530 PF17762 HTH domain found in ParB protein BRM88_02530 PF02195 ParB-like nuclease domain BRM88_02535 PF13614 AAA domain BRM88_02545 PF00156 Phosphoribosyl transferase domain BRM88_02550 PF03372 Endonuclease/Exonuclease/phosphatase family BRM88_02555 PF07690 Major Facilitator Superfamily BRM88_02565 PF03702 Anhydro-N-acetylmuramic acid kinase BRM88_02570 PF01551 Peptidase family M23 BRM88_02570 PF04225 Opacity-associated protein A LysM-like domain BRM88_02575 PF00579 tRNA synthetases class I (W and Y) BRM88_02615 PF00672 HAMP domain BRM88_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_02615 PF00512 His Kinase A (phospho-acceptor) domain BRM88_02615 PF01627 Hpt domain BRM88_02615 PF00072 Response regulator receiver domain BRM88_02615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM88_02620 PF00072 Response regulator receiver domain BRM88_02620 PF00486 Transcriptional regulatory protein, C terminal BRM88_02645 PF01521 Iron-sulphur cluster biosynthesis BRM88_02655 PF00293 NUDIX domain BRM88_02655 PF09297 NADH pyrophosphatase zinc ribbon domain BRM88_02655 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BRM88_02660 PF17113 Regulatory signalling modulator protein AmpE BRM88_02660 PF03186 CobD/Cbib protein BRM88_02685 PF07690 Major Facilitator Superfamily BRM88_02700 PF12805 FUSC-like inner membrane protein yccS BRM88_02710 PF00005 ABC transporter BRM88_02710 PF02687 FtsX-like permease family BRM88_02710 PF12704 MacB-like periplasmic core domain BRM88_02715 PF02843 Phosphoribosylglycinamide synthetase, C domain BRM88_02715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BRM88_02715 PF02844 Phosphoribosylglycinamide synthetase, N domain BRM88_02725 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system BRM88_02730 PF01808 AICARFT/IMPCHase bienzyme BRM88_02730 PF02142 MGS-like domain BRM88_02740 PF12146 Serine aminopeptidase, S33 BRM88_02740 PF12147 Putative methyltransferase BRM88_02750 PF12146 Serine aminopeptidase, S33 BRM88_02750 PF12147 Putative methyltransferase BRM88_02755 PF00782 Dual specificity phosphatase, catalytic domain BRM88_02770 PF02954 Bacterial regulatory protein, Fis family BRM88_02785 PF01381 Helix-turn-helix BRM88_02830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM88_02830 PF02785 Biotin carboxylase C-terminal domain BRM88_02830 PF00289 Biotin carboxylase, N-terminal domain BRM88_02840 PF00364 Biotin-requiring enzyme BRM88_02845 PF01220 Dehydroquinase class II BRM88_02860 PF02683 Cytochrome C biogenesis protein transmembrane region BRM88_02860 PF11412 Disulphide bond corrector protein DsbC BRM88_02865 PF03091 CutA1 divalent ion tolerance protein BRM88_02900 PF18074 Primosomal protein N C-terminal domain BRM88_02900 PF17764 3′ DNA-binding domain (3′BD) BRM88_02900 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BRM88_02900 PF00270 DEAD/DEAH box helicase BRM88_02900 PF00271 Helicase conserved C-terminal domain BRM88_02925 PF01554 MatE BRM88_02930 PF01343 Peptidase family S49 BRM88_02955 PF01300 Telomere recombination BRM88_02960 PF13368 Topoisomerase C-terminal repeat BRM88_02960 PF01751 Toprim domain BRM88_02960 PF01131 DNA topoisomerase BRM88_02975 PF04361 Protein of unknown function (DUF494) BRM88_02980 PF17782 DprA winged helix domain BRM88_02980 PF02481 DNA recombination-mediator protein A BRM88_02985 PF01476 LysM domain BRM88_02990 PF01327 Polypeptide deformylase BRM88_02995 PF00551 Formyl transferase BRM88_02995 PF02911 Formyl transferase, C-terminal domain BRM88_03000 PF01029 NusB family BRM88_03000 PF01189 16S rRNA methyltransferase RsmB/F BRM88_03015 PF00535 Glycosyl transferase family 2 BRM88_03035 PF00925 GTP cyclohydrolase II BRM88_03050 PF03279 Bacterial lipid A biosynthesis acyltransferase BRM88_03055 PF02580 D-Tyr-tRNA(Tyr) deacylase BRM88_03060 PF04539 Sigma-70 region 3 BRM88_03060 PF04546 Sigma-70, non-essential region BRM88_03060 PF03979 Sigma-70 factor, region 1.1 BRM88_03060 PF00140 Sigma-70 factor, region 1.2 BRM88_03060 PF04542 Sigma-70 region 2 BRM88_03060 PF04545 Sigma-70, region 4 BRM88_03145 PF00005 ABC transporter BRM88_03160 PF00593 TonB dependent receptor BRM88_03160 PF07715 TonB-dependent Receptor Plug Domain BRM88_03215 PF02322 Cytochrome bd terminal oxidase subunit II BRM88_03220 PF01654 Cytochrome bd terminal oxidase subunit I BRM88_03235 PF00158 Sigma-54 interaction domain BRM88_03235 PF00072 Response regulator receiver domain BRM88_03235 PF02954 Bacterial regulatory protein, Fis family BRM88_03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_03265 PF00672 HAMP domain BRM88_03265 PF02743 Cache domain BRM88_03265 PF06580 Histidine kinase BRM88_03280 PF13520 Amino acid permease BRM88_03300 PF01431 Peptidase family M13 BRM88_03300 PF05649 Peptidase family M13 BRM88_03315 PF00248 Aldo/keto reductase family BRM88_03320 PF03358 NADPH-dependent FMN reductase BRM88_03330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRM88_03340 PF03167 Uracil DNA glycosylase superfamily BRM88_03350 PF02469 Fasciclin domain BRM88_03365 PF00999 Sodium/hydrogen exchanger family BRM88_03370 PF00005 ABC transporter BRM88_03375 PF01061 ABC-2 type transporter BRM88_03390 PF00082 Subtilase family BRM88_03390 PF04151 Bacterial pre-peptidase C-terminal domain BRM88_03400 PF13188 PAS domain BRM88_03400 PF00072 Response regulator receiver domain BRM88_03400 PF00512 His Kinase A (phospho-acceptor) domain BRM88_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_03400 PF08448 PAS fold BRM88_03405 PF00072 Response regulator receiver domain BRM88_03405 PF00486 Transcriptional regulatory protein, C terminal BRM88_03425 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRM88_03425 PF00691 OmpA family BRM88_03430 PF01618 MotA/TolQ/ExbB proton channel family BRM88_03440 PF01641 SelR domain BRM88_03450 PF01037 Lrp/AsnC ligand binding domain BRM88_03455 PF01266 FAD dependent oxidoreductase BRM88_03460 PF00842 Alanine racemase, C-terminal domain BRM88_03460 PF01168 Alanine racemase, N-terminal domain BRM88_03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_03480 PF00989 PAS fold BRM88_03480 PF00512 His Kinase A (phospho-acceptor) domain BRM88_03495 PF07995 Glucose / Sorbosone dehydrogenase BRM88_03515 PF08468 Methyltransferase small domain N-terminal BRM88_03515 PF05175 Methyltransferase small domain BRM88_03520 PF01479 S4 domain BRM88_03520 PF00849 RNA pseudouridylate synthase BRM88_03525 PF13419 Haloacid dehalogenase-like hydrolase BRM88_03555 PF04461 Protein of unknown function (DUF520) BRM88_03560 PF00892 EamA-like transporter family BRM88_03565 PF00005 ABC transporter BRM88_03565 PF09383 NIL domain BRM88_03570 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_03575 PF03180 NLPA lipoprotein BRM88_03600 PF00364 Biotin-requiring enzyme BRM88_03600 PF02817 e3 binding domain BRM88_03600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRM88_03610 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_03610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRM88_03630 PF00119 ATP synthase A chain BRM88_03635 PF00137 ATP synthase subunit C BRM88_03640 PF00430 ATP synthase B/B' CF(0) BRM88_03645 PF00213 ATP synthase delta (OSCP) subunit BRM88_03650 PF00306 ATP synthase alpha/beta chain, C terminal domain BRM88_03650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_03650 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM88_03655 PF00231 ATP synthase BRM88_03660 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRM88_03660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_03665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BRM88_03670 PF01817 Chorismate mutase type II BRM88_03685 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_03685 PF14602 Hexapeptide repeat of succinyl-transferase BRM88_03685 PF12804 MobA-like NTP transferase domain BRM88_03720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_03725 PF01380 SIS domain BRM88_03755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM88_03760 PF05275 Copper resistance protein B precursor (CopB) BRM88_03765 PF07732 Multicopper oxidase BRM88_03765 PF07731 Multicopper oxidase BRM88_03765 PF00394 Multicopper oxidase BRM88_03780 PF01432 Peptidase family M3 BRM88_03790 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_03790 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_03795 PF07977 FabA-like domain BRM88_03805 PF00817 impB/mucB/samB family BRM88_03805 PF11799 impB/mucB/samB family C-terminal domain BRM88_03810 PF13419 Haloacid dehalogenase-like hydrolase BRM88_03820 PF13185 GAF domain BRM88_03835 PF01242 6-pyruvoyl tetrahydropterin synthase BRM88_03845 PF00271 Helicase conserved C-terminal domain BRM88_03845 PF00270 DEAD/DEAH box helicase BRM88_03860 PF13417 Glutathione S-transferase, N-terminal domain BRM88_03865 PF00437 Type II/IV secretion system protein BRM88_03885 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_03885 PF00571 CBS domain BRM88_03890 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM88_03900 PF01370 NAD dependent epimerase/dehydratase family BRM88_03940 PF00872 Transposase, Mutator family BRM88_03950 PF00005 ABC transporter BRM88_03960 PF01012 Electron transfer flavoprotein domain BRM88_03960 PF00766 Electron transfer flavoprotein FAD-binding domain BRM88_03965 PF01012 Electron transfer flavoprotein domain BRM88_03970 PF16363 GDP-mannose 4,6 dehydratase BRM88_03975 PF00483 Nucleotidyl transferase BRM88_03980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BRM88_03985 PF04321 RmlD substrate binding domain BRM88_03990 PF00483 Nucleotidyl transferase BRM88_03990 PF01050 Mannose-6-phosphate isomerase BRM88_03995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM88_03995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM88_03995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM88_03995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM88_04000 PF01144 Coenzyme A transferase BRM88_04005 PF01144 Coenzyme A transferase BRM88_04010 PF14307 Glycosyltransferase WbsX BRM88_04010 PF05045 Rhamnan synthesis protein F BRM88_04035 PF03886 ABC-type transport auxiliary lipoprotein component BRM88_04035 PF02470 MlaD protein BRM88_04040 PF00005 ABC transporter BRM88_04045 PF02405 Permease MlaE BRM88_04055 PF00816 H-NS histone family BRM88_04060 PF03129 Anticodon binding domain BRM88_04060 PF04073 Aminoacyl-tRNA editing domain BRM88_04060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM88_04070 PF01066 CDP-alcohol phosphatidyltransferase BRM88_04100 PF05598 Transposase domain (DUF772) BRM88_04100 PF01609 Transposase DDE domain BRM88_04115 PF01464 Transglycosylase SLT domain BRM88_04115 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BRM88_04120 PF00544 Pectate lyase BRM88_04170 PF10458 Valyl tRNA synthetase tRNA binding arm BRM88_04170 PF00133 tRNA synthetases class I (I, L, M and V) BRM88_04170 PF08264 Anticodon-binding domain of tRNA BRM88_04185 PF02789 Cytosol aminopeptidase family, N-terminal domain BRM88_04185 PF00883 Cytosol aminopeptidase family, catalytic domain BRM88_04195 PF03739 Lipopolysaccharide export system permease LptF/LptG BRM88_04210 PF00589 Phage integrase family BRM88_04210 PF02899 Phage integrase, N-terminal SAM-like domain BRM88_04215 PF13098 Thioredoxin-like domain BRM88_04215 PF10411 Disulfide bond isomerase protein N-terminus BRM88_04220 PF02769 AIR synthase related protein, C-terminal domain BRM88_04220 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BRM88_04220 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BRM88_04230 PF13018 Extended Signal Peptide of Type V secretion system BRM88_04230 PF05658 Head domain of trimeric autotransporter adhesin BRM88_04230 PF05662 Coiled stalk of trimeric autotransporter adhesin BRM88_04230 PF03895 YadA-like membrane anchor domain BRM88_04250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM88_04250 PF00437 Type II/IV secretion system protein BRM88_04260 PF00482 Type II secretion system (T2SS), protein F BRM88_04265 PF08334 Type II secretion system (T2SS), protein G BRM88_04270 PF12019 Type II transport protein GspH BRM88_04275 PF07963 Prokaryotic N-terminal methylation motif BRM88_04285 PF03934 Type II secretion system (T2SS), protein K BRM88_04290 PF05137 Fimbrial assembly protein (PilN) BRM88_04295 PF10741 Type II secretion system (T2SS), protein M subtype b BRM88_04305 PF03958 Bacterial type II/III secretion system short domain BRM88_04305 PF00263 Bacterial type II and III secretion system protein BRM88_04320 PF00392 Bacterial regulatory proteins, gntR family BRM88_04320 PF07702 UTRA domain BRM88_04335 PF00593 TonB dependent receptor BRM88_04335 PF07715 TonB-dependent Receptor Plug Domain BRM88_04375 PF09827 CRISPR associated protein Cas2 BRM88_04380 PF01867 CRISPR associated protein Cas1 BRM88_04400 PF09704 CRISPR-associated protein (Cas_Cas5) BRM88_04420 PF02545 Maf-like protein BRM88_04425 PF02620 Large ribosomal RNA subunit accumulation protein YceD BRM88_04430 PF01783 Ribosomal L32p protein family BRM88_04435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM88_04435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM88_04445 PF00698 Acyl transferase domain BRM88_04455 PF00550 Phosphopantetheine attachment site BRM88_04460 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_04460 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_04465 PF04715 Anthranilate synthase component I, N terminal region BRM88_04465 PF00425 chorismate binding enzyme BRM88_04470 PF02618 YceG-like family BRM88_04475 PF09115 DNA polymerase III, delta subunit, C terminal BRM88_04505 PF02954 Bacterial regulatory protein, Fis family BRM88_04505 PF06506 Propionate catabolism activator BRM88_04505 PF00158 Sigma-54 interaction domain BRM88_04515 PF00285 Citrate synthase, C-terminal domain BRM88_04520 PF00330 Aconitase family (aconitate hydratase) BRM88_04520 PF00694 Aconitase C-terminal domain BRM88_04535 PF04303 PrpF protein BRM88_04540 PF05598 Transposase domain (DUF772) BRM88_04540 PF01609 Transposase DDE domain BRM88_04545 PF07715 TonB-dependent Receptor Plug Domain BRM88_04545 PF00593 TonB dependent receptor BRM88_04600 PF00665 Integrase core domain BRM88_04600 PF13936 Helix-turn-helix domain BRM88_04610 PF08534 Redoxin BRM88_04620 PF00226 DnaJ domain BRM88_04620 PF01556 DnaJ C terminal domain BRM88_04625 PF00072 Response regulator receiver domain BRM88_04630 PF01145 SPFH domain / Band 7 family BRM88_04630 PF12221 Bacterial membrane protein N terminal BRM88_04635 PF01145 SPFH domain / Band 7 family BRM88_04645 PF00709 Adenylosuccinate synthetase BRM88_04650 PF11838 ERAP1-like C-terminal domain BRM88_04650 PF01433 Peptidase family M1 domain BRM88_04660 PF05598 Transposase domain (DUF772) BRM88_04700 PF03279 Bacterial lipid A biosynthesis acyltransferase BRM88_04705 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BRM88_04710 PF02321 Outer membrane efflux protein BRM88_04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_04740 PF00330 Aconitase family (aconitate hydratase) BRM88_04745 PF00694 Aconitase C-terminal domain BRM88_04755 PF00180 Isocitrate/isopropylmalate dehydrogenase BRM88_04760 PF00682 HMGL-like BRM88_04760 PF08502 LeuA allosteric (dimerisation) domain BRM88_04765 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_04775 PF00205 Thiamine pyrophosphate enzyme, central domain BRM88_04775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRM88_04775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRM88_04780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BRM88_04780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BRM88_04790 PF13667 ThiC-associated domain BRM88_04790 PF01964 Radical SAM ThiC family BRM88_04795 PF00486 Transcriptional regulatory protein, C terminal BRM88_04795 PF18500 CadC C-terminal domain 1 BRM88_04800 PF12833 Helix-turn-helix domain BRM88_04805 PF07715 TonB-dependent Receptor Plug Domain BRM88_04805 PF00593 TonB dependent receptor BRM88_04820 PF00719 Inorganic pyrophosphatase BRM88_04840 PF03030 Inorganic H+ pyrophosphatase BRM88_04860 PF00365 Phosphofructokinase BRM88_04870 PF08245 Mur ligase middle domain BRM88_04870 PF02875 Mur ligase family, glutamate ligase domain BRM88_04870 PF01225 Mur ligase family, catalytic domain BRM88_04880 PF01062 Bestrophin, RFP-TM, chloride channel BRM88_04900 PF00043 Glutathione S-transferase, C-terminal domain BRM88_04900 PF02798 Glutathione S-transferase, N-terminal domain BRM88_04905 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BRM88_04905 PF00056 lactate/malate dehydrogenase, NAD binding domain BRM88_04910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BRM88_04935 PF01474 Class-II DAHP synthetase family BRM88_04945 PF02600 Disulfide bond formation protein DsbB BRM88_05070 PF05598 Transposase domain (DUF772) BRM88_05070 PF01609 Transposase DDE domain BRM88_05095 PF03009 Glycerophosphoryl diester phosphodiesterase family BRM88_05120 PF00180 Isocitrate/isopropylmalate dehydrogenase BRM88_05120 PF18324 Hypothetical protein TT1725 BRM88_05175 PF05697 Bacterial trigger factor protein (TF) BRM88_05175 PF05698 Bacterial trigger factor protein (TF) C-terminus BRM88_05180 PF00574 Clp protease BRM88_05185 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_05185 PF06689 ClpX C4-type zinc finger BRM88_05185 PF07724 AAA domain (Cdc48 subfamily) BRM88_05190 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_05190 PF05362 Lon protease (S16) C-terminal proteolytic domain BRM88_05190 PF02190 ATP-dependent protease La (LON) substrate-binding domain BRM88_05195 PF00216 Bacterial DNA-binding protein BRM88_05220 PF01476 LysM domain BRM88_05220 PF05257 CHAP domain BRM88_05225 PF16123 Hydroxyacylglutathione hydrolase C-terminus BRM88_05225 PF00753 Metallo-beta-lactamase superfamily BRM88_05235 PF00075 RNase H BRM88_05240 PF00929 Exonuclease BRM88_05275 PF16671 Actin cross-linking domain BRM88_05275 PF04717 Type VI secretion system, phage-baseplate injector BRM88_05335 PF00589 Phage integrase family BRM88_05335 PF13356 Arm DNA-binding domain BRM88_05345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BRM88_05355 PF00753 Metallo-beta-lactamase superfamily BRM88_05355 PF12706 Beta-lactamase superfamily domain BRM88_05360 PF06463 Molybdenum Cofactor Synthesis C BRM88_05360 PF04055 Radical SAM superfamily BRM88_05370 PF01967 MoaC family BRM88_05375 PF02597 ThiS family BRM88_05380 PF02391 MoaE protein BRM88_05395 PF12169 DNA polymerase III subunits gamma and tau domain III BRM88_05395 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BRM88_05395 PF12170 DNA polymerase III tau subunit V interacting with alpha BRM88_05400 PF02575 YbaB/EbfC DNA-binding family BRM88_05405 PF13662 Toprim domain BRM88_05405 PF02132 RecR protein BRM88_05410 PF01230 HIT domain BRM88_05420 PF13559 Domain of unknown function (DUF4129) BRM88_05420 PF01841 Transglutaminase-like superfamily BRM88_05420 PF11992 Domain of unknown function (DUF3488) BRM88_05430 PF17863 AAA lid domain BRM88_05430 PF07726 ATPase family associated with various cellular activities (AAA) BRM88_05450 PF01327 Polypeptide deformylase BRM88_05500 PF05598 Transposase domain (DUF772) BRM88_05500 PF01609 Transposase DDE domain BRM88_05530 PF00462 Glutaredoxin BRM88_05535 PF01522 Polysaccharide deacetylase BRM88_05560 PF03193 RsgA GTPase BRM88_05575 PF00128 Alpha amylase, catalytic domain BRM88_05595 PF00356 Bacterial regulatory proteins, lacI family BRM88_05600 PF00106 short chain dehydrogenase BRM88_05605 PF03600 Citrate transporter BRM88_05620 PF00486 Transcriptional regulatory protein, C terminal BRM88_05620 PF00072 Response regulator receiver domain BRM88_05625 PF00512 His Kinase A (phospho-acceptor) domain BRM88_05625 PF08521 Two-component sensor kinase N-terminal BRM88_05625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_05635 PF00196 Bacterial regulatory proteins, luxR family BRM88_05635 PF00072 Response regulator receiver domain BRM88_05655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_05655 PF03466 LysR substrate binding domain BRM88_05665 PF07690 Major Facilitator Superfamily BRM88_05670 PF00512 His Kinase A (phospho-acceptor) domain BRM88_05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_05685 PF00375 Sodium:dicarboxylate symporter family BRM88_05690 PF00390 Malic enzyme, N-terminal domain BRM88_05690 PF01515 Phosphate acetyl/butaryl transferase BRM88_05690 PF03949 Malic enzyme, NAD binding domain BRM88_05725 PF02581 Thiamine monophosphate synthase BRM88_05730 PF00301 Rubredoxin BRM88_05735 PF13369 Transglutaminase-like superfamily BRM88_05745 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BRM88_05755 PF01812 5-formyltetrahydrofolate cyclo-ligase family BRM88_05765 PF05164 Cell division protein ZapA BRM88_05775 PF03695 Uncharacterised protein family (UPF0149) BRM88_05780 PF00557 Metallopeptidase family M24 BRM88_05780 PF05195 Aminopeptidase P, N-terminal domain BRM88_05800 PF00557 Metallopeptidase family M24 BRM88_05815 PF06969 HemN C-terminal domain BRM88_05815 PF04055 Radical SAM superfamily BRM88_05820 PF01725 Ham1 family BRM88_05830 PF03725 3' exoribonuclease family, domain 2 BRM88_05830 PF01138 3' exoribonuclease family, domain 1 BRM88_05835 PF03755 YicC-like family, N-terminal region BRM88_05835 PF08340 Domain of unknown function (DUF1732) BRM88_05840 PF00625 Guanylate kinase BRM88_05855 PF01192 RNA polymerase Rpb6 BRM88_05860 PF13291 ACT domain BRM88_05860 PF04607 Region found in RelA / SpoT proteins BRM88_05860 PF02824 TGS domain BRM88_05865 PF01042 Endoribonuclease L-PSP BRM88_05870 PF17191 RecG wedge domain BRM88_05870 PF00271 Helicase conserved C-terminal domain BRM88_05870 PF00270 DEAD/DEAH box helicase BRM88_05875 PF01156 Inosine-uridine preferring nucleoside hydrolase BRM88_05880 PF01197 Ribosomal protein L31 BRM88_05885 PF00285 Citrate synthase, C-terminal domain BRM88_05895 PF17092 Penicillin-binding protein OB-like domain BRM88_05895 PF00912 Transglycosylase BRM88_05895 PF00905 Penicillin binding protein transpeptidase domain BRM88_05920 PF07660 Secretin and TonB N terminus short domain BRM88_05920 PF03958 Bacterial type II/III secretion system short domain BRM88_05920 PF11741 AMIN domain BRM88_05920 PF00263 Bacterial type II and III secretion system protein BRM88_05945 PF17863 AAA lid domain BRM88_05945 PF07726 ATPase family associated with various cellular activities (AAA) BRM88_05965 PF00092 von Willebrand factor type A domain BRM88_05965 PF07584 Aerotolerance regulator N-terminal BRM88_05985 PF00375 Sodium:dicarboxylate symporter family BRM88_05990 PF00456 Transketolase, thiamine diphosphate binding domain BRM88_05990 PF02779 Transketolase, pyrimidine binding domain BRM88_05990 PF02780 Transketolase, C-terminal domain BRM88_06000 PF04225 Opacity-associated protein A LysM-like domain BRM88_06000 PF01551 Peptidase family M23 BRM88_06005 PF03734 L,D-transpeptidase catalytic domain BRM88_06005 PF01476 LysM domain BRM88_06030 PF00501 AMP-binding enzyme BRM88_06050 PF00486 Transcriptional regulatory protein, C terminal BRM88_06050 PF00072 Response regulator receiver domain BRM88_06055 PF08521 Two-component sensor kinase N-terminal BRM88_06055 PF00512 His Kinase A (phospho-acceptor) domain BRM88_06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_06075 PF03459 TOBE domain BRM88_06075 PF00005 ABC transporter BRM88_06080 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_06090 PF04273 Putative phosphatase (DUF442) BRM88_06090 PF00753 Metallo-beta-lactamase superfamily BRM88_06125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BRM88_06125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BRM88_06145 PF00512 His Kinase A (phospho-acceptor) domain BRM88_06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_06145 PF00672 HAMP domain BRM88_06150 PF00072 Response regulator receiver domain BRM88_06150 PF00486 Transcriptional regulatory protein, C terminal BRM88_06160 PF08443 RimK-like ATP-grasp domain BRM88_06160 PF18030 RimK PreATP-grasp domain BRM88_06200 PF00520 Ion transport protein BRM88_06200 PF00027 Cyclic nucleotide-binding domain BRM88_06205 PF00202 Aminotransferase class-III BRM88_06220 PF01593 Flavin containing amine oxidoreductase BRM88_06225 PF00034 Cytochrome c BRM88_06225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BRM88_06240 PF00127 Copper binding proteins, plastocyanin/azurin family BRM88_06250 PF00202 Aminotransferase class-III BRM88_06270 PF00665 Integrase core domain BRM88_06270 PF13276 HTH-like domain BRM88_06270 PF13333 Integrase core domain BRM88_06280 PF03377 TAL effector repeat BRM88_06300 PF03377 TAL effector repeat BRM88_06320 PF03377 TAL effector repeat BRM88_06335 PF03377 TAL effector repeat BRM88_06355 PF01208 Uroporphyrinogen decarboxylase (URO-D) BRM88_06365 PF01761 3-dehydroquinate synthase BRM88_06370 PF01202 Shikimate kinase BRM88_06375 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BRM88_06375 PF01243 Pyridoxamine 5'-phosphate oxidase BRM88_06385 PF04012 PspA/IM30 family BRM88_06410 PF03738 Glutathionylspermidine synthase preATP-grasp BRM88_06425 PF09278 MerR, DNA binding BRM88_06425 PF00376 MerR family regulatory protein BRM88_06460 PF12706 Beta-lactamase superfamily domain BRM88_06480 PF00324 Amino acid permease BRM88_06485 PF00196 Bacterial regulatory proteins, luxR family BRM88_06490 PF00561 alpha/beta hydrolase fold BRM88_06500 PF00324 Amino acid permease BRM88_06520 PF01654 Cytochrome bd terminal oxidase subunit I BRM88_06525 PF02322 Cytochrome bd terminal oxidase subunit II BRM88_06530 PF00756 Putative esterase BRM88_06535 PF00571 CBS domain BRM88_06535 PF01769 Divalent cation transporter BRM88_06535 PF03448 MgtE intracellular N domain BRM88_06545 PF05524 PEP-utilising enzyme, N-terminal BRM88_06545 PF02896 PEP-utilising enzyme, TIM barrel domain BRM88_06545 PF00391 PEP-utilising enzyme, mobile domain BRM88_06550 PF00381 PTS HPr component phosphorylation site BRM88_06560 PF03668 P-loop ATPase protein family BRM88_06565 PF07475 HPr Serine kinase C-terminal domain BRM88_06565 PF02603 HPr Serine kinase N terminus BRM88_06570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRM88_06575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BRM88_06580 PF04963 Sigma-54 factor, core binding domain BRM88_06580 PF04552 Sigma-54, DNA binding domain BRM88_06580 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRM88_06585 PF00005 ABC transporter BRM88_06590 PF03968 OstA-like protein BRM88_06605 PF01380 SIS domain BRM88_06605 PF00571 CBS domain BRM88_06610 PF01722 BolA-like protein BRM88_06620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRM88_06640 PF00551 Formyl transferase BRM88_06655 PF02769 AIR synthase related protein, C-terminal domain BRM88_06655 PF00586 AIR synthase related protein, N-terminal domain BRM88_06665 PF01594 AI-2E family transporter BRM88_06670 PF00308 Bacterial dnaA protein BRM88_06675 PF00483 Nucleotidyl transferase BRM88_06680 PF01636 Phosphotransferase enzyme family BRM88_06695 PF07687 Peptidase dimerisation domain BRM88_06695 PF01546 Peptidase family M20/M25/M40 BRM88_06735 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BRM88_06740 PF01263 Aldose 1-epimerase BRM88_06745 PF01578 Cytochrome C assembly protein BRM88_06755 PF02978 Signal peptide binding domain BRM88_06755 PF00448 SRP54-type protein, GTPase domain BRM88_06755 PF02881 SRP54-type protein, helical bundle domain BRM88_06770 PF03060 Nitronate monooxygenase BRM88_06780 PF00886 Ribosomal protein S16 BRM88_06785 PF05239 PRC-barrel domain BRM88_06785 PF01782 RimM N-terminal domain BRM88_06790 PF01746 tRNA (Guanine-1)-methyltransferase BRM88_06795 PF01245 Ribosomal protein L19 BRM88_06805 PF01554 MatE BRM88_06810 PF01479 S4 domain BRM88_06840 PF01541 GIY-YIG catalytic domain BRM88_06845 PF02861 Clp amino terminal domain, pathogenicity island component BRM88_06845 PF17871 AAA lid domain BRM88_06845 PF07724 AAA domain (Cdc48 subfamily) BRM88_06845 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_06845 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_06885 PF07715 TonB-dependent Receptor Plug Domain BRM88_06885 PF00593 TonB dependent receptor BRM88_06910 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BRM88_06910 PF12557 Cob(I)alamin adenosyltransferase N terminal BRM88_06920 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BRM88_06925 PF02277 Phosphoribosyltransferase BRM88_06935 PF02654 Cobalamin-5-phosphate synthase BRM88_06945 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRM88_06945 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BRM88_06955 PF07690 Major Facilitator Superfamily BRM88_06960 PF06276 Ferric iron reductase FhuF-like transporter BRM88_06960 PF04183 IucA / IucC family BRM88_06970 PF07715 TonB-dependent Receptor Plug Domain BRM88_06970 PF07660 Secretin and TonB N terminus short domain BRM88_06970 PF00593 TonB dependent receptor BRM88_06985 PF02254 TrkA-N domain BRM88_06985 PF00999 Sodium/hydrogen exchanger family BRM88_06995 PF07715 TonB-dependent Receptor Plug Domain BRM88_06995 PF00593 TonB dependent receptor BRM88_07000 PF00593 TonB dependent receptor BRM88_07000 PF07715 TonB-dependent Receptor Plug Domain BRM88_07015 PF07715 TonB-dependent Receptor Plug Domain BRM88_07015 PF00593 TonB dependent receptor BRM88_07020 PF12848 ABC transporter BRM88_07020 PF00005 ABC transporter BRM88_07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_07035 PF03466 LysR substrate binding domain BRM88_07045 PF13472 GDSL-like Lipase/Acylhydrolase family BRM88_07045 PF07859 alpha/beta hydrolase fold BRM88_07065 PF12833 Helix-turn-helix domain BRM88_07070 PF00183 Hsp90 protein BRM88_07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_07100 PF00872 Transposase, Mutator family BRM88_07105 PF00120 Glutamine synthetase, catalytic domain BRM88_07110 PF04204 Homoserine O-succinyltransferase BRM88_07115 PF01810 LysE type translocator BRM88_07120 PF07722 Peptidase C26 BRM88_07130 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM88_07165 PF00355 Rieske [2Fe-2S] domain BRM88_07180 PF00266 Aminotransferase class-V BRM88_07185 PF01458 Uncharacterized protein family (UPF0051) BRM88_07190 PF00005 ABC transporter BRM88_07195 PF01458 Uncharacterized protein family (UPF0051) BRM88_07200 PF02082 Transcriptional regulator BRM88_07220 PF01965 DJ-1/PfpI family BRM88_07255 PF01609 Transposase DDE domain BRM88_07255 PF05598 Transposase domain (DUF772) BRM88_07270 PF14748 Pyrroline-5-carboxylate reductase dimerisation BRM88_07270 PF03807 NADP oxidoreductase coenzyme F420-dependent BRM88_07275 PF01168 Alanine racemase, N-terminal domain BRM88_07280 PF00437 Type II/IV secretion system protein BRM88_07285 PF00437 Type II/IV secretion system protein BRM88_07310 PF13302 Acetyltransferase (GNAT) domain BRM88_07310 PF00117 Glutamine amidotransferase class-I BRM88_07310 PF00958 GMP synthase C terminal domain BRM88_07310 PF03352 Methyladenine glycosylase BRM88_07310 PF13673 Acetyltransferase (GNAT) domain BRM88_07320 PF02622 Uncharacterized ACR, COG1678 BRM88_07325 PF03652 Holliday junction resolvase BRM88_07330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRM88_07330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRM88_07340 PF02566 OsmC-like protein BRM88_07350 PF02567 Phenazine biosynthesis-like protein BRM88_07360 PF01842 ACT domain BRM88_07360 PF00696 Amino acid kinase family BRM88_07375 PF08245 Mur ligase middle domain BRM88_07390 PF00348 Polyprenyl synthetase BRM88_07395 PF00436 Single-strand binding protein family BRM88_07400 PF00360 Phytochrome region BRM88_07400 PF00990 Diguanylate cyclase, GGDEF domain BRM88_07400 PF01590 GAF domain BRM88_07400 PF00563 EAL domain BRM88_07440 PF04328 Selenoprotein, putative BRM88_07445 PF13722 5TM C-terminal transporter carbon starvation CstA BRM88_07445 PF02554 Carbon starvation protein CstA BRM88_07450 PF05726 Pirin C-terminal cupin domain BRM88_07450 PF02678 Pirin BRM88_07460 PF04717 Type VI secretion system, phage-baseplate injector BRM88_07480 PF01609 Transposase DDE domain BRM88_07480 PF05598 Transposase domain (DUF772) BRM88_07490 PF04717 Type VI secretion system, phage-baseplate injector BRM88_07525 PF04717 Type VI secretion system, phage-baseplate injector BRM88_07580 PF05726 Pirin C-terminal cupin domain BRM88_07580 PF02678 Pirin BRM88_07590 PF04493 Endonuclease V BRM88_07595 PF00300 Histidine phosphatase superfamily (branch 1) BRM88_07610 PF01431 Peptidase family M13 BRM88_07610 PF05649 Peptidase family M13 BRM88_07620 PF00072 Response regulator receiver domain BRM88_07620 PF01339 CheB methylesterase BRM88_07625 PF01739 CheR methyltransferase, SAM binding domain BRM88_07625 PF03705 CheR methyltransferase, all-alpha domain BRM88_07630 PF13426 PAS domain BRM88_07630 PF00990 Diguanylate cyclase, GGDEF domain BRM88_07630 PF00563 EAL domain BRM88_07635 PF01584 CheW-like domain BRM88_07640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_07640 PF02203 Tar ligand binding domain homologue BRM88_07640 PF00672 HAMP domain BRM88_07645 PF09078 CheY binding BRM88_07645 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_07645 PF01584 CheW-like domain BRM88_07645 PF01627 Hpt domain BRM88_07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_07655 PF00270 DEAD/DEAH box helicase BRM88_07655 PF17757 UvrB interaction domain BRM88_07655 PF02559 CarD-like/TRCF domain BRM88_07655 PF03461 TRCF domain BRM88_07655 PF00271 Helicase conserved C-terminal domain BRM88_07665 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BRM88_07685 PF00672 HAMP domain BRM88_07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_07685 PF00512 His Kinase A (phospho-acceptor) domain BRM88_07710 PF05598 Transposase domain (DUF772) BRM88_07710 PF01609 Transposase DDE domain BRM88_07735 PF01609 Transposase DDE domain BRM88_07735 PF05598 Transposase domain (DUF772) BRM88_07770 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM88_07775 PF01475 Ferric uptake regulator family BRM88_07820 PF00313 'Cold-shock' DNA-binding domain BRM88_07835 PF00899 ThiF family BRM88_07840 PF01026 TatD related DNase BRM88_07855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_07855 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_07855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_07865 PF13417 Glutathione S-transferase, N-terminal domain BRM88_07870 PF00733 Asparagine synthase BRM88_07870 PF13537 Glutamine amidotransferase domain BRM88_07875 PF03358 NADPH-dependent FMN reductase BRM88_07880 PF00772 DnaB-like helicase N terminal domain BRM88_07880 PF03796 DnaB-like helicase C terminal domain BRM88_07885 PF03441 FAD binding domain of DNA photolyase BRM88_07885 PF00875 DNA photolyase BRM88_07900 PF00691 OmpA family BRM88_07900 PF05736 OprF membrane domain BRM88_07935 PF00107 Zinc-binding dehydrogenase BRM88_07935 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_07940 PF00654 Voltage gated chloride channel BRM88_07950 PF01609 Transposase DDE domain BRM88_07950 PF05598 Transposase domain (DUF772) BRM88_07955 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BRM88_07955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BRM88_07960 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_07960 PF12833 Helix-turn-helix domain BRM88_07960 PF06029 AlkA N-terminal domain BRM88_07960 PF02805 Metal binding domain of Ada BRM88_08005 PF00271 Helicase conserved C-terminal domain BRM88_08005 PF00270 DEAD/DEAH box helicase BRM88_08005 PF03880 DbpA RNA binding domain BRM88_08010 PF00990 Diguanylate cyclase, GGDEF domain BRM88_08010 PF00563 EAL domain BRM88_08010 PF08448 PAS fold BRM88_08015 PF01479 S4 domain BRM88_08015 PF00849 RNA pseudouridylate synthase BRM88_08040 PF03737 Aldolase/RraA BRM88_08045 PF00144 Beta-lactamase BRM88_08050 PF00999 Sodium/hydrogen exchanger family BRM88_08055 PF00672 HAMP domain BRM88_08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_08055 PF00512 His Kinase A (phospho-acceptor) domain BRM88_08060 PF00486 Transcriptional regulatory protein, C terminal BRM88_08060 PF00072 Response regulator receiver domain BRM88_08065 PF02321 Outer membrane efflux protein BRM88_08080 PF00873 AcrB/AcrD/AcrF family BRM88_08090 PF00005 ABC transporter BRM88_08090 PF00664 ABC transporter transmembrane region BRM88_08115 PF01609 Transposase DDE domain BRM88_08115 PF05598 Transposase domain (DUF772) BRM88_08130 PF01609 Transposase DDE domain BRM88_08130 PF05598 Transposase domain (DUF772) BRM88_08170 PF01121 Dephospho-CoA kinase BRM88_08175 PF06750 Bacterial Peptidase A24 N-terminal domain BRM88_08175 PF01478 Type IV leader peptidase family BRM88_08180 PF00482 Type II secretion system (T2SS), protein F BRM88_08185 PF00114 Pilin (bacterial filament) BRM88_08185 PF07963 Prokaryotic N-terminal methylation motif BRM88_08190 PF00884 Sulfatase BRM88_08190 PF08019 Phosphoethanolamine transferase EptA/EptB BRM88_08205 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM88_08205 PF00437 Type II/IV secretion system protein BRM88_08220 PF00158 Sigma-54 interaction domain BRM88_08220 PF02954 Bacterial regulatory protein, Fis family BRM88_08220 PF00072 Response regulator receiver domain BRM88_08225 PF00512 His Kinase A (phospho-acceptor) domain BRM88_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_08230 PF08442 ATP-grasp domain BRM88_08230 PF00549 CoA-ligase BRM88_08235 PF02629 CoA binding domain BRM88_08235 PF00549 CoA-ligase BRM88_08250 PF00795 Carbon-nitrogen hydrolase BRM88_08250 PF02540 NAD synthase BRM88_08255 PF13525 Outer membrane lipoprotein BRM88_08260 PF00849 RNA pseudouridylate synthase BRM88_08280 PF00982 Glycosyltransferase family 20 BRM88_08285 PF00723 Glycosyl hydrolases family 15 BRM88_08290 PF02358 Trehalose-phosphatase BRM88_08300 PF07715 TonB-dependent Receptor Plug Domain BRM88_08300 PF00593 TonB dependent receptor BRM88_08330 PF04377 Arginine-tRNA-protein transferase, C terminus BRM88_08330 PF04376 Arginine-tRNA-protein transferase, N terminus BRM88_08350 PF04542 Sigma-70 region 2 BRM88_08350 PF08281 Sigma-70, region 4 BRM88_08365 PF00378 Enoyl-CoA hydratase/isomerase BRM88_08380 PF00005 ABC transporter BRM88_08380 PF17760 UvrA interaction domain BRM88_08380 PF17755 UvrA DNA-binding domain BRM88_08385 PF00829 Ribosomal prokaryotic L21 protein BRM88_08390 PF01016 Ribosomal L27 protein BRM88_08395 PF01018 GTP1/OBG BRM88_08395 PF01926 50S ribosome-binding GTPase BRM88_08400 PF01649 Ribosomal protein S20 BRM88_08405 PF03023 Lipid II flippase MurJ BRM88_08410 PF01687 Riboflavin kinase BRM88_08410 PF06574 FAD synthetase BRM88_08415 PF08264 Anticodon-binding domain of tRNA BRM88_08415 PF00133 tRNA synthetases class I (I, L, M and V) BRM88_08415 PF06827 Zinc finger found in FPG and IleRS BRM88_08420 PF01252 Signal peptidase (SPase) II BRM88_08425 PF02401 LytB protein BRM88_08435 PF06481 COX Aromatic Rich Motif BRM88_08435 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRM88_08440 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRM88_08445 PF00510 Cytochrome c oxidase subunit III BRM88_08450 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BRM88_08460 PF04717 Type VI secretion system, phage-baseplate injector BRM88_08470 PF05593 RHS Repeat BRM88_08470 PF03527 RHS protein BRM88_08470 PF14220 Domain of unknown function (DUF4329) BRM88_08470 PF14220 Domain of unknown function (DUF4329) BRM88_08470 PF03527 RHS protein BRM88_08470 PF05593 RHS Repeat BRM88_08500 PF05188 MutS domain II BRM88_08500 PF00488 MutS domain V BRM88_08500 PF01624 MutS domain I BRM88_08500 PF05190 MutS family domain IV BRM88_08500 PF05192 MutS domain III BRM88_08525 PF18073 Rubredoxin metal binding domain BRM88_08565 PF02938 GAD domain BRM88_08565 PF00152 tRNA synthetases class II (D, K and N) BRM88_08565 PF01336 OB-fold nucleic acid binding domain BRM88_08580 PF01709 Transcriptional regulator BRM88_08585 PF02075 Crossover junction endodeoxyribonuclease RuvC BRM88_08590 PF01330 RuvA N terminal domain BRM88_08590 PF07499 RuvA, C-terminal domain BRM88_08595 PF02705 K+ potassium transporter BRM88_08600 PF17864 RuvB AAA lid domain BRM88_08600 PF05491 RuvB C-terminal winged helix domain BRM88_08600 PF05496 Holliday junction DNA helicase RuvB P-loop domain BRM88_08605 PF03061 Thioesterase superfamily BRM88_08610 PF01618 MotA/TolQ/ExbB proton channel family BRM88_08615 PF02472 Biopolymer transport protein ExbD/TolR BRM88_08625 PF04052 TolB amino-terminal domain BRM88_08625 PF07676 WD40-like Beta Propeller Repeat BRM88_08630 PF00691 OmpA family BRM88_08640 PF04055 Radical SAM superfamily BRM88_08650 PF00849 RNA pseudouridylate synthase BRM88_08650 PF01479 S4 domain BRM88_08700 PF05598 Transposase domain (DUF772) BRM88_08710 PF06508 Queuosine biosynthesis protein QueC BRM88_08880 PF00182 Chitinase class I BRM88_08935 PF01555 DNA methylase BRM88_08965 PF11798 IMS family HHH motif BRM88_08965 PF11799 impB/mucB/samB family C-terminal domain BRM88_08965 PF00817 impB/mucB/samB family BRM88_08965 PF13438 Domain of unknown function (DUF4113) BRM88_08995 PF00270 DEAD/DEAH box helicase BRM88_08995 PF09382 RQC domain BRM88_08995 PF16124 RecQ zinc-binding BRM88_08995 PF00570 HRDC domain BRM88_08995 PF00271 Helicase conserved C-terminal domain BRM88_09005 PF00210 Ferritin-like domain BRM88_09010 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BRM88_09010 PF00270 DEAD/DEAH box helicase BRM88_09010 PF11898 Domain of unknown function (DUF3418) BRM88_09010 PF04408 Helicase associated domain (HA2) BRM88_09010 PF00271 Helicase conserved C-terminal domain BRM88_09040 PF13186 Iron-sulfur cluster-binding domain BRM88_09040 PF04055 Radical SAM superfamily BRM88_09045 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BRM88_09050 PF03070 TENA/THI-4/PQQC family BRM88_09055 PF12706 Beta-lactamase superfamily domain BRM88_09060 PF08042 PqqA family BRM88_09065 PF02824 TGS domain BRM88_09065 PF13291 ACT domain BRM88_09065 PF04607 Region found in RelA / SpoT proteins BRM88_09075 PF00535 Glycosyl transferase family 2 BRM88_09080 PF00912 Transglycosylase BRM88_09080 PF14814 Bifunctional transglycosylase second domain BRM88_09080 PF00905 Penicillin binding protein transpeptidase domain BRM88_09090 PF04851 Type III restriction enzyme, res subunit BRM88_09090 PF13307 Helicase C-terminal domain BRM88_09095 PF00814 Glycoprotease family BRM88_09100 PF03747 ADP-ribosylglycohydrolase BRM88_09110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BRM88_09110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BRM88_09115 PF00072 Response regulator receiver domain BRM88_09120 PF00072 Response regulator receiver domain BRM88_09125 PF01584 CheW-like domain BRM88_09130 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BRM88_09130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_09135 PF01584 CheW-like domain BRM88_09135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_09135 PF00072 Response regulator receiver domain BRM88_09135 PF01627 Hpt domain BRM88_09150 PF13302 Acetyltransferase (GNAT) domain BRM88_09180 PF01112 Asparaginase BRM88_09185 PF03932 CutC family BRM88_09230 PF01301 Glycosyl hydrolases family 35 BRM88_09240 PF07971 Glycosyl hydrolase family 92 BRM88_09240 PF17678 Glycosyl hydrolase family 92 N-terminal domain BRM88_09305 PF00664 ABC transporter transmembrane region BRM88_09305 PF00005 ABC transporter BRM88_09305 PF03412 Peptidase C39 family BRM88_09310 PF07691 PA14 domain BRM88_09310 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_09310 PF14310 Fibronectin type III-like domain BRM88_09310 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_09330 PF00704 Glycosyl hydrolases family 18 BRM88_09330 PF01476 LysM domain BRM88_09345 PF02685 Glucokinase BRM88_09350 PF04452 RNA methyltransferase BRM88_09355 PF00202 Aminotransferase class-III BRM88_09360 PF00293 NUDIX domain BRM88_09365 PF00459 Inositol monophosphatase family BRM88_09370 PF03819 MazG nucleotide pyrophosphohydrolase domain BRM88_09385 PF16200 C-terminal region of band_7 BRM88_09385 PF01145 SPFH domain / Band 7 family BRM88_09395 PF08669 Glycine cleavage T-protein C-terminal barrel domain BRM88_09395 PF01571 Aminomethyltransferase folate-binding domain BRM88_09400 PF01597 Glycine cleavage H-protein BRM88_09435 PF09317 Domain of unknown function (DUF1974) BRM88_09435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_09435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_09445 PF00440 Bacterial regulatory proteins, tetR family BRM88_09450 PF07715 TonB-dependent Receptor Plug Domain BRM88_09450 PF00593 TonB dependent receptor BRM88_09460 PF01430 Hsp33 protein BRM88_09465 PF00912 Transglycosylase BRM88_09470 PF00535 Glycosyl transferase family 2 BRM88_09490 PF03006 Haemolysin-III related BRM88_09495 PF16658 Class II release factor RF3, C-terminal domain BRM88_09495 PF00009 Elongation factor Tu GTP binding domain BRM88_09500 PF01476 LysM domain BRM88_09500 PF08525 Opacity-associated protein A N-terminal motif BRM88_09500 PF01551 Peptidase family M23 BRM88_09505 PF00561 alpha/beta hydrolase fold BRM88_09510 PF01053 Cys/Met metabolism PLP-dependent enzyme BRM88_09520 PF03313 Serine dehydratase alpha chain BRM88_09520 PF03315 Serine dehydratase beta chain BRM88_09535 PF04264 YceI-like domain BRM88_09545 PF04264 YceI-like domain BRM88_09550 PF00072 Response regulator receiver domain BRM88_09550 PF01627 Hpt domain BRM88_09550 PF00512 His Kinase A (phospho-acceptor) domain BRM88_09550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_09550 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_09550 PF00672 HAMP domain BRM88_09555 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_09555 PF00672 HAMP domain BRM88_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_09555 PF00512 His Kinase A (phospho-acceptor) domain BRM88_09555 PF00072 Response regulator receiver domain BRM88_09555 PF01627 Hpt domain BRM88_09560 PF00072 Response regulator receiver domain BRM88_09560 PF00512 His Kinase A (phospho-acceptor) domain BRM88_09560 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_09560 PF00672 HAMP domain BRM88_09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_09560 PF01627 Hpt domain BRM88_09595 PF07745 Glycosyl hydrolase family 53 BRM88_09605 PF09856 Predicted transcriptional regulator (DUF2083) BRM88_09605 PF01381 Helix-turn-helix BRM88_09605 PF06114 IrrE N-terminal-like domain BRM88_09610 PF00171 Aldehyde dehydrogenase family BRM88_09615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_09615 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_09615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_09620 PF00378 Enoyl-CoA hydratase/isomerase BRM88_09625 PF00378 Enoyl-CoA hydratase/isomerase BRM88_09625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM88_09625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM88_09630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM88_09630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRM88_09635 PF01545 Cation efflux family BRM88_09640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM88_09640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM88_09640 PF00378 Enoyl-CoA hydratase/isomerase BRM88_09645 PF08281 Sigma-70, region 4 BRM88_09645 PF04542 Sigma-70 region 2 BRM88_09655 PF13180 PDZ domain BRM88_09660 PF06421 GTP-binding protein LepA C-terminus BRM88_09660 PF00679 Elongation factor G C-terminus BRM88_09660 PF00009 Elongation factor Tu GTP binding domain BRM88_09660 PF03144 Elongation factor Tu domain 2 BRM88_09665 PF10502 Signal peptidase, peptidase S26 BRM88_09675 PF00035 Double-stranded RNA binding motif BRM88_09675 PF14622 Ribonuclease-III-like BRM88_09680 PF07650 KH domain BRM88_09680 PF01926 50S ribosome-binding GTPase BRM88_09685 PF11967 Recombination protein O N terminal BRM88_09685 PF02565 Recombination protein O C terminal BRM88_09695 PF05958 tRNA (Uracil-5-)-methyltransferase BRM88_09710 PF05598 Transposase domain (DUF772) BRM88_09715 PF01323 DSBA-like thioredoxin domain BRM88_09720 PF01593 Flavin containing amine oxidoreductase BRM88_09725 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BRM88_09730 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_09740 PF01048 Phosphorylase superfamily BRM88_09745 PF00313 'Cold-shock' DNA-binding domain BRM88_09765 PF00270 DEAD/DEAH box helicase BRM88_09765 PF00271 Helicase conserved C-terminal domain BRM88_09765 PF08494 DEAD/H associated BRM88_09770 PF04675 DNA ligase N terminus BRM88_09770 PF04679 ATP dependent DNA ligase C terminal region BRM88_09770 PF01068 ATP dependent DNA ligase domain BRM88_09780 PF04675 DNA ligase N terminus BRM88_09780 PF01068 ATP dependent DNA ligase domain BRM88_09780 PF04679 ATP dependent DNA ligase C terminal region BRM88_09795 PF00990 Diguanylate cyclase, GGDEF domain BRM88_09795 PF00072 Response regulator receiver domain BRM88_09810 PF02803 Thiolase, C-terminal domain BRM88_09810 PF00108 Thiolase, N-terminal domain BRM88_09815 PF00082 Subtilase family BRM88_09815 PF03797 Autotransporter beta-domain BRM88_09815 PF12951 Passenger-associated-transport-repeat BRM88_09820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BRM88_09820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BRM88_09835 PF01863 Protein of unknown function DUF45 BRM88_09840 PF07043 Protein of unknown function (DUF1328) BRM88_09850 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRM88_09895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_09910 PF03831 PhnA domain BRM88_09910 PF08274 PhnA Zinc-Ribbon BRM88_09925 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM88_09930 PF07690 Major Facilitator Superfamily BRM88_09985 PF03706 Lysylphosphatidylglycerol synthase TM region BRM88_09985 PF09924 Uncharacterised conserved protein (DUF2156) BRM88_09995 PF01042 Endoribonuclease L-PSP BRM88_10040 PF04542 Sigma-70 region 2 BRM88_10040 PF04545 Sigma-70, region 4 BRM88_10060 PF04060 Putative Fe-S cluster BRM88_10070 PF09334 tRNA synthetases class I (M) BRM88_10070 PF01588 Putative tRNA binding domain BRM88_10090 PF00324 Amino acid permease BRM88_10095 PF02574 Homocysteine S-methyltransferase BRM88_10110 PF02592 Putative vitamin uptake transporter BRM88_10125 PF05598 Transposase domain (DUF772) BRM88_10145 PF00009 Elongation factor Tu GTP binding domain BRM88_10215 PF13732 Domain of unknown function (DUF4162) BRM88_10215 PF00005 ABC transporter BRM88_10220 PF07715 TonB-dependent Receptor Plug Domain BRM88_10220 PF00593 TonB dependent receptor BRM88_10230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BRM88_10235 PF01336 OB-fold nucleic acid binding domain BRM88_10235 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRM88_10235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRM88_10235 PF14579 Helix-hairpin-helix motif BRM88_10235 PF02811 PHP domain BRM88_10240 PF01351 Ribonuclease HII BRM88_10245 PF02684 Lipid-A-disaccharide synthetase BRM88_10250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BRM88_10250 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_10255 PF07977 FabA-like domain BRM88_10260 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_10260 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BRM88_10270 PF07244 Surface antigen variable number repeat BRM88_10270 PF01103 Surface antigen BRM88_10275 PF02163 Peptidase family M50 BRM88_10275 PF17820 PDZ domain BRM88_10280 PF13288 DXP reductoisomerase C-terminal domain BRM88_10280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BRM88_10280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BRM88_10290 PF01255 Putative undecaprenyl diphosphate synthase BRM88_10295 PF01765 Ribosome recycling factor BRM88_10300 PF00696 Amino acid kinase family BRM88_10310 PF00889 Elongation factor TS BRM88_10315 PF00318 Ribosomal protein S2 BRM88_10350 PF00557 Metallopeptidase family M24 BRM88_10355 PF08335 GlnD PII-uridylyltransferase BRM88_10355 PF01966 HD domain BRM88_10355 PF01909 Nucleotidyltransferase domain BRM88_10360 PF14602 Hexapeptide repeat of succinyl-transferase BRM88_10360 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BRM88_10360 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_10370 PF03960 ArsC family BRM88_10380 PF01546 Peptidase family M20/M25/M40 BRM88_10380 PF07687 Peptidase dimerisation domain BRM88_10385 PF13537 Glutamine amidotransferase domain BRM88_10385 PF00733 Asparagine synthase BRM88_10400 PF07715 TonB-dependent Receptor Plug Domain BRM88_10400 PF00593 TonB dependent receptor BRM88_10405 PF01804 Penicillin amidase BRM88_10410 PF00210 Ferritin-like domain BRM88_10420 PF00521 DNA gyrase/topoisomerase IV, subunit A BRM88_10420 PF03989 DNA gyrase C-terminal domain, beta-propeller BRM88_10435 PF02321 Outer membrane efflux protein BRM88_10440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_10440 PF00529 HlyD membrane-fusion protein of T1SS BRM88_10445 PF07690 Major Facilitator Superfamily BRM88_10490 PF02780 Transketolase, C-terminal domain BRM88_10490 PF02779 Transketolase, pyrimidine binding domain BRM88_10490 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BRM88_10500 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_10500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_10500 PF12806 Acetyl-CoA dehydrogenase C-terminal like BRM88_10500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_10515 PF01668 SmpB protein BRM88_10520 PF03364 Polyketide cyclase / dehydrase and lipid transport BRM88_10525 PF03658 RnfH family Ubiquitin BRM88_10535 PF04355 SmpA / OmlA family BRM88_10540 PF01475 Ferric uptake regulator family BRM88_10545 PF02463 RecF/RecN/SMC N terminal domain BRM88_10550 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BRM88_10550 PF01628 HrcA protein C terminal domain BRM88_10555 PF01025 GrpE BRM88_10560 PF00012 Hsp70 protein BRM88_10565 PF01556 DnaJ C terminal domain BRM88_10565 PF00226 DnaJ domain BRM88_10565 PF00684 DnaJ central domain BRM88_10575 PF08543 Phosphomethylpyrimidine kinase BRM88_10580 PF01817 Chorismate mutase type II BRM88_10580 PF02153 Prephenate dehydrogenase BRM88_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_10600 PF03466 LysR substrate binding domain BRM88_10615 PF00005 ABC transporter BRM88_10615 PF00664 ABC transporter transmembrane region BRM88_10620 PF01205 Uncharacterized protein family UPF0029 BRM88_10625 PF03641 Possible lysine decarboxylase BRM88_10630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRM88_10630 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_10635 PF02817 e3 binding domain BRM88_10635 PF00364 Biotin-requiring enzyme BRM88_10635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRM88_10640 PF00676 Dehydrogenase E1 component BRM88_10640 PF16078 2-oxoglutarate dehydrogenase N-terminus BRM88_10640 PF16870 2-oxoglutarate dehydrogenase C-terminal BRM88_10640 PF02779 Transketolase, pyrimidine binding domain BRM88_10650 PF08007 Cupin superfamily protein BRM88_10670 PF08328 Adenylosuccinate lyase C-terminal BRM88_10670 PF00206 Lyase BRM88_10700 PF00206 Lyase BRM88_10700 PF10415 Fumarase C C-terminus BRM88_10730 PF00005 ABC transporter BRM88_10735 PF00392 Bacterial regulatory proteins, gntR family BRM88_10745 PF00255 Glutathione peroxidase BRM88_10750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_10750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRM88_10755 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRM88_10755 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRM88_10755 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRM88_10760 PF04102 SlyX BRM88_10780 PF07690 Major Facilitator Superfamily BRM88_10785 PF00294 pfkB family carbohydrate kinase BRM88_10795 PF02965 Vitamin B12 dependent methionine synthase, activation domain BRM88_10795 PF02607 B12 binding domain BRM88_10795 PF02574 Homocysteine S-methyltransferase BRM88_10795 PF00809 Pterin binding enzyme BRM88_10795 PF02310 B12 binding domain BRM88_10800 PF02574 Homocysteine S-methyltransferase BRM88_10800 PF00809 Pterin binding enzyme BRM88_10805 PF01209 ubiE/COQ5 methyltransferase family BRM88_10810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_10810 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_10810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_10840 PF08206 Ribonuclease B OB domain BRM88_10840 PF00773 RNB domain BRM88_10840 PF00575 S1 RNA binding domain BRM88_10840 PF17876 Cold shock domain BRM88_10840 PF08461 Ribonuclease R winged-helix domain BRM88_10860 PF00588 SpoU rRNA Methylase family BRM88_10860 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRM88_10875 PF05598 Transposase domain (DUF772) BRM88_10875 PF01609 Transposase DDE domain BRM88_10900 PF00872 Transposase, Mutator family BRM88_10910 PF00313 'Cold-shock' DNA-binding domain BRM88_10915 PF00561 alpha/beta hydrolase fold BRM88_10925 PF01609 Transposase DDE domain BRM88_10925 PF05598 Transposase domain (DUF772) BRM88_10985 PF01609 Transposase DDE domain BRM88_10985 PF05598 Transposase domain (DUF772) BRM88_11010 PF03544 Gram-negative bacterial TonB protein C-terminal BRM88_11015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM88_11015 PF02403 Seryl-tRNA synthetase N-terminal domain BRM88_11035 PF05598 Transposase domain (DUF772) BRM88_11035 PF01609 Transposase DDE domain BRM88_11040 PF02525 Flavodoxin-like fold BRM88_11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_11045 PF03466 LysR substrate binding domain BRM88_11065 PF03377 TAL effector repeat BRM88_11085 PF03377 TAL effector repeat BRM88_11105 PF03377 TAL effector repeat BRM88_11140 PF03079 ARD/ARD' family BRM88_11145 PF00596 Class II Aldolase and Adducin N-terminal domain BRM88_11150 PF13520 Amino acid permease BRM88_11155 PF13520 Amino acid permease BRM88_11165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM88_11165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM88_11170 PF02913 FAD linked oxidases, C-terminal domain BRM88_11170 PF01565 FAD binding domain BRM88_11195 PF03918 Cytochrome C biogenesis protein BRM88_11200 PF08534 Redoxin BRM88_11205 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRM88_11205 PF01578 Cytochrome C assembly protein BRM88_11210 PF03100 CcmE BRM88_11220 PF01578 Cytochrome C assembly protein BRM88_11225 PF03379 CcmB protein BRM88_11230 PF00005 ABC transporter BRM88_11235 PF00155 Aminotransferase class I and II BRM88_11240 PF00795 Carbon-nitrogen hydrolase BRM88_11260 PF00849 RNA pseudouridylate synthase BRM88_11260 PF01479 S4 domain BRM88_11265 PF04079 Segregation and condensation complex subunit ScpB BRM88_11270 PF02616 Segregation and condensation protein ScpA BRM88_11275 PF03795 YCII-related domain BRM88_11285 PF00356 Bacterial regulatory proteins, lacI family BRM88_11305 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_11310 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_11335 PF00795 Carbon-nitrogen hydrolase BRM88_11345 PF04371 Porphyromonas-type peptidyl-arginine deiminase BRM88_11355 PF00444 Ribosomal protein L36 BRM88_11360 PF02224 Cytidylate kinase BRM88_11365 PF00575 S1 RNA binding domain BRM88_11370 PF00216 Bacterial DNA-binding protein BRM88_11380 PF18073 Rubredoxin metal binding domain BRM88_11385 PF00953 Glycosyl transferase family 4 BRM88_11390 PF02719 Polysaccharide biosynthesis protein BRM88_11395 PF00483 Nucleotidyl transferase BRM88_11415 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BRM88_11415 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BRM88_11420 PF00478 IMP dehydrogenase / GMP reductase domain BRM88_11420 PF00571 CBS domain BRM88_11425 PF00958 GMP synthase C terminal domain BRM88_11425 PF00117 Glutamine amidotransferase class-I BRM88_11425 PF02540 NAD synthase BRM88_11430 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BRM88_11435 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM88_11435 PF00361 Proton-conducting membrane transporter BRM88_11435 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BRM88_11440 PF03466 LysR substrate binding domain BRM88_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_11465 PF03601 Conserved hypothetical protein 698 BRM88_11470 PF03466 LysR substrate binding domain BRM88_11470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_11485 PF00072 Response regulator receiver domain BRM88_11495 PF01566 Natural resistance-associated macrophage protein BRM88_11500 PF02742 Iron dependent repressor, metal binding and dimerisation domain BRM88_11500 PF01325 Iron dependent repressor, N-terminal DNA binding domain BRM88_11505 PF14437 MafB19-like deaminase BRM88_11510 PF00929 Exonuclease BRM88_11515 PF00924 Mechanosensitive ion channel BRM88_11515 PF05552 Conserved TM helix BRM88_11520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BRM88_11520 PF00391 PEP-utilising enzyme, mobile domain BRM88_11520 PF02896 PEP-utilising enzyme, TIM barrel domain BRM88_11525 PF03618 Kinase/pyrophosphorylase BRM88_11545 PF01066 CDP-alcohol phosphatidyltransferase BRM88_11555 PF00561 alpha/beta hydrolase fold BRM88_11570 PF00355 Rieske [2Fe-2S] domain BRM88_11570 PF01266 FAD dependent oxidoreductase BRM88_11580 PF17674 HHH domain BRM88_11580 PF00575 S1 RNA binding domain BRM88_11580 PF09371 Tex-like protein N-terminal domain BRM88_11580 PF16921 Tex protein YqgF-like domain BRM88_11595 PF00072 Response regulator receiver domain BRM88_11605 PF04551 GcpE protein BRM88_11610 PF01569 PAP2 superfamily BRM88_11620 PF07690 Major Facilitator Superfamily BRM88_11635 PF01177 Asp/Glu/Hydantoin racemase BRM88_11640 PF00892 EamA-like transporter family BRM88_11645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BRM88_11645 PF01565 FAD binding domain BRM88_11650 PF01180 Dihydroorotate dehydrogenase BRM88_11665 PF00171 Aldehyde dehydrogenase family BRM88_11680 PF13840 ACT domain BRM88_11680 PF00742 Homoserine dehydrogenase BRM88_11680 PF03447 Homoserine dehydrogenase, NAD binding domain BRM88_11680 PF01842 ACT domain BRM88_11680 PF00696 Amino acid kinase family BRM88_11685 PF08544 GHMP kinases C terminal BRM88_11685 PF00288 GHMP kinases N terminal domain BRM88_11700 PF14821 Threonine synthase N terminus BRM88_11700 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_11715 PF13393 Histidyl-tRNA synthetase BRM88_11715 PF03129 Anticodon binding domain BRM88_11735 PF01634 ATP phosphoribosyltransferase BRM88_11735 PF08029 HisG, C-terminal domain BRM88_11740 PF00815 Histidinol dehydrogenase BRM88_11745 PF00155 Aminotransferase class I and II BRM88_11750 PF00475 Imidazoleglycerol-phosphate dehydratase BRM88_11755 PF00117 Glutamine amidotransferase class-I BRM88_11760 PF00977 Histidine biosynthesis protein BRM88_11765 PF00977 Histidine biosynthesis protein BRM88_11770 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BRM88_11770 PF01502 Phosphoribosyl-AMP cyclohydrolase BRM88_11780 PF03377 TAL effector repeat BRM88_11795 PF03377 TAL effector repeat BRM88_11810 PF07517 SecA DEAD-like domain BRM88_11810 PF01043 SecA preprotein cross-linking domain BRM88_11810 PF07516 SecA Wing and Scaffold domain BRM88_11810 PF02810 SEC-C motif BRM88_11915 PF02303 Helix-destabilising protein BRM88_11990 PF03377 TAL effector repeat BRM88_12005 PF03377 TAL effector repeat BRM88_12025 PF03377 TAL effector repeat BRM88_12035 PF00665 Integrase core domain BRM88_12035 PF13276 HTH-like domain BRM88_12035 PF13333 Integrase core domain BRM88_12050 PF05598 Transposase domain (DUF772) BRM88_12050 PF01609 Transposase DDE domain BRM88_12075 PF00872 Transposase, Mutator family BRM88_12085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM88_12105 PF01066 CDP-alcohol phosphatidyltransferase BRM88_12110 PF01541 GIY-YIG catalytic domain BRM88_12110 PF02151 UvrB/uvrC motif BRM88_12110 PF08459 UvrC Helix-hairpin-helix N-terminal BRM88_12120 PF01451 Low molecular weight phosphotyrosine protein phosphatase BRM88_12125 PF02348 Cytidylyltransferase BRM88_12130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BRM88_12135 PF00005 ABC transporter BRM88_12135 PF00664 ABC transporter transmembrane region BRM88_12145 PF01618 MotA/TolQ/ExbB proton channel family BRM88_12150 PF00753 Metallo-beta-lactamase superfamily BRM88_12150 PF03772 Competence protein BRM88_12170 PF00005 ABC transporter BRM88_12175 PF12704 MacB-like periplasmic core domain BRM88_12175 PF02687 FtsX-like permease family BRM88_12185 PF03937 Flavinator of succinate dehydrogenase BRM88_12190 PF13085 2Fe-2S iron-sulfur cluster binding domain BRM88_12200 PF02910 Fumarate reductase flavoprotein C-term BRM88_12200 PF00890 FAD binding domain BRM88_12205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRM88_12210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRM88_12220 PF01571 Aminomethyltransferase folate-binding domain BRM88_12230 PF17912 MalK OB fold domain BRM88_12230 PF00005 ABC transporter BRM88_12235 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRM88_12235 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRM88_12240 PF02685 Glucokinase BRM88_12245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BRM88_12250 PF00920 Dehydratase family BRM88_12255 PF01081 KDPG and KHG aldolase BRM88_12285 PF00072 Response regulator receiver domain BRM88_12285 PF01627 Hpt domain BRM88_12285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM88_12285 PF00672 HAMP domain BRM88_12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_12285 PF00512 His Kinase A (phospho-acceptor) domain BRM88_12315 PF08448 PAS fold BRM88_12315 PF00990 Diguanylate cyclase, GGDEF domain BRM88_12345 PF02253 Phospholipase A1 BRM88_12365 PF05681 Fumarate hydratase (Fumerase) BRM88_12365 PF05683 Fumarase C-terminus BRM88_12370 PF00005 ABC transporter BRM88_12375 PF00175 Oxidoreductase NAD-binding domain BRM88_12375 PF00970 Oxidoreductase FAD-binding domain BRM88_12380 PF00255 Glutathione peroxidase BRM88_12410 PF04542 Sigma-70 region 2 BRM88_12410 PF08281 Sigma-70, region 4 BRM88_12420 PF12802 MarR family BRM88_12455 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_12455 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_12455 PF14310 Fibronectin type III-like domain BRM88_12470 PF00563 EAL domain BRM88_12470 PF01590 GAF domain BRM88_12470 PF00990 Diguanylate cyclase, GGDEF domain BRM88_12470 PF00360 Phytochrome region BRM88_12480 PF00474 Sodium:solute symporter family BRM88_12490 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_12490 PF14310 Fibronectin type III-like domain BRM88_12490 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_12515 PF00342 Phosphoglucose isomerase BRM88_12520 PF02261 Aspartate decarboxylase BRM88_12525 PF02569 Pantoate-beta-alanine ligase BRM88_12530 PF02548 Ketopantoate hydroxymethyltransferase BRM88_12535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRM88_12540 PF01743 Poly A polymerase head domain BRM88_12540 PF12626 Polymerase A arginine-rich C-terminus BRM88_12540 PF12627 Probable RNA and SrmB- binding site of polymerase A BRM88_12550 PF02649 Type I GTP cyclohydrolase folE2 BRM88_12555 PF01520 N-acetylmuramoyl-L-alanine amidase BRM88_12575 PF05598 Transposase domain (DUF772) BRM88_12580 PF00082 Subtilase family BRM88_12580 PF03797 Autotransporter beta-domain BRM88_12590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_12595 PF00873 AcrB/AcrD/AcrF family BRM88_12600 PF02321 Outer membrane efflux protein BRM88_12605 PF00072 Response regulator receiver domain BRM88_12605 PF08448 PAS fold BRM88_12605 PF00512 His Kinase A (phospho-acceptor) domain BRM88_12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_12605 PF13426 PAS domain BRM88_12610 PF00196 Bacterial regulatory proteins, luxR family BRM88_12610 PF00072 Response regulator receiver domain BRM88_12615 PF12951 Passenger-associated-transport-repeat BRM88_12650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRM88_12655 PF00800 Prephenate dehydratase BRM88_12655 PF01842 ACT domain BRM88_12655 PF01817 Chorismate mutase type II BRM88_12660 PF00266 Aminotransferase class-V BRM88_12665 PF00174 Oxidoreductase molybdopterin binding domain BRM88_12675 PF01794 Ferric reductase like transmembrane component BRM88_12700 PF07702 UTRA domain BRM88_12700 PF00392 Bacterial regulatory proteins, gntR family BRM88_12710 PF07969 Amidohydrolase family BRM88_12715 PF00221 Aromatic amino acid lyase BRM88_12725 PF01175 Urocanase Rossmann-like domain BRM88_12725 PF17392 Urocanase C-terminal domain BRM88_12725 PF17391 Urocanase N-terminal domain BRM88_12745 PF03989 DNA gyrase C-terminal domain, beta-propeller BRM88_12745 PF00521 DNA gyrase/topoisomerase IV, subunit A BRM88_12750 PF01008 Initiation factor 2 subunit family BRM88_12765 PF00152 tRNA synthetases class II (D, K and N) BRM88_12770 PF03120 NAD-dependent DNA ligase OB-fold domain BRM88_12770 PF01653 NAD-dependent DNA ligase adenylation domain BRM88_12770 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BRM88_12770 PF00533 BRCA1 C Terminus (BRCT) domain BRM88_12770 PF12826 Helix-hairpin-helix motif BRM88_12780 PF04354 ZipA, C-terminal FtsZ-binding domain BRM88_12785 PF02463 RecF/RecN/SMC N terminal domain BRM88_12790 PF03948 Ribosomal protein L9, C-terminal domain BRM88_12790 PF01281 Ribosomal protein L9, N-terminal domain BRM88_12795 PF01084 Ribosomal protein S18 BRM88_12800 PF01250 Ribosomal protein S6 BRM88_12805 PF01521 Iron-sulphur cluster biosynthesis BRM88_12815 PF00152 tRNA synthetases class II (D, K and N) BRM88_12815 PF01336 OB-fold nucleic acid binding domain BRM88_12840 PF00484 Carbonic anhydrase BRM88_12845 PF06052 3-hydroxyanthranilic acid dioxygenase BRM88_12855 PF00266 Aminotransferase class-V BRM88_12860 PF01494 FAD binding domain BRM88_12865 PF00929 Exonuclease BRM88_12865 PF08411 Exonuclease C-terminal BRM88_12875 PF00248 Aldo/keto reductase family BRM88_12890 PF01513 ATP-NAD kinase BRM88_12900 PF10672 S-adenosylmethionine-dependent methyltransferase BRM88_12900 PF01170 Putative RNA methylase family UPF0020 BRM88_12900 PF02926 THUMP domain BRM88_12940 PF00581 Rhodanese-like domain BRM88_12945 PF00293 NUDIX domain BRM88_12950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRM88_12950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_12955 PF00378 Enoyl-CoA hydratase/isomerase BRM88_12965 PF10576 Iron-sulfur binding domain of endonuclease III BRM88_12965 PF00633 Helix-hairpin-helix motif BRM88_12965 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_12975 PF00484 Carbonic anhydrase BRM88_12980 PF05598 Transposase domain (DUF772) BRM88_12980 PF01609 Transposase DDE domain BRM88_13015 PF12849 PBP superfamily domain BRM88_13020 PF12849 PBP superfamily domain BRM88_13025 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_13030 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_13035 PF00005 ABC transporter BRM88_13040 PF01895 PhoU domain BRM88_13050 PF00929 Exonuclease BRM88_13065 PF00872 Transposase, Mutator family BRM88_13095 PF13495 Phage integrase, N-terminal SAM-like domain BRM88_13095 PF00589 Phage integrase family BRM88_13100 PF02355 Protein export membrane protein BRM88_13100 PF07549 SecD/SecF GG Motif BRM88_13105 PF13721 SecD export protein N-terminal TM region BRM88_13105 PF02355 Protein export membrane protein BRM88_13105 PF07549 SecD/SecF GG Motif BRM88_13110 PF02699 Preprotein translocase subunit BRM88_13115 PF01702 Queuine tRNA-ribosyltransferase BRM88_13120 PF02547 Queuosine biosynthesis protein BRM88_13205 PF00037 4Fe-4S binding domain BRM88_13220 PF01467 Cytidylyltransferase-like BRM88_13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_13230 PF00183 Hsp90 protein BRM88_13245 PF00899 ThiF family BRM88_13260 PF05598 Transposase domain (DUF772) BRM88_13275 PF01609 Transposase DDE domain BRM88_13275 PF05598 Transposase domain (DUF772) BRM88_13285 PF05598 Transposase domain (DUF772) BRM88_13285 PF01609 Transposase DDE domain BRM88_13315 PF00994 Probable molybdopterin binding domain BRM88_13315 PF03454 MoeA C-terminal region (domain IV) BRM88_13315 PF03453 MoeA N-terminal region (domain I and II) BRM88_13320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BRM88_13320 PF01926 50S ribosome-binding GTPase BRM88_13325 PF01011 PQQ enzyme repeat BRM88_13325 PF13360 PQQ-like domain BRM88_13335 PF13464 Domain of unknown function (DUF4115) BRM88_13345 PF04055 Radical SAM superfamily BRM88_13350 PF00334 Nucleoside diphosphate kinase BRM88_13360 PF00378 Enoyl-CoA hydratase/isomerase BRM88_13360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRM88_13360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRM88_13365 PF00108 Thiolase, N-terminal domain BRM88_13365 PF02803 Thiolase, C-terminal domain BRM88_13370 PF00654 Voltage gated chloride channel BRM88_13380 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BRM88_13390 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_13390 PF16193 AAA C-terminal domain BRM88_13390 PF12002 MgsA AAA+ ATPase C terminal BRM88_13405 PF03548 Outer membrane lipoprotein carrier protein LolA BRM88_13415 PF01580 FtsK/SpoIIIE family BRM88_13415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BRM88_13415 PF09397 Ftsk gamma domain BRM88_13415 PF17854 FtsK alpha domain BRM88_13420 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_13435 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BRM88_13440 PF01176 Translation initiation factor 1A / IF-1 BRM88_13445 PF02861 Clp amino terminal domain, pathogenicity island component BRM88_13445 PF07724 AAA domain (Cdc48 subfamily) BRM88_13445 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_13445 PF17871 AAA lid domain BRM88_13445 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_13450 PF02617 ATP-dependent Clp protease adaptor protein ClpS BRM88_13455 PF00293 NUDIX domain BRM88_13465 PF04356 Protein of unknown function (DUF489) BRM88_13470 PF12729 Four helix bundle sensory module for signal transduction BRM88_13470 PF00672 HAMP domain BRM88_13470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_13485 PF08447 PAS fold BRM88_13485 PF00990 Diguanylate cyclase, GGDEF domain BRM88_13485 PF08448 PAS fold BRM88_13485 PF00563 EAL domain BRM88_13490 PF07730 Histidine kinase BRM88_13490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_13495 PF00563 EAL domain BRM88_13495 PF03707 Bacterial signalling protein N terminal repeat BRM88_13495 PF00990 Diguanylate cyclase, GGDEF domain BRM88_13500 PF00989 PAS fold BRM88_13500 PF13188 PAS domain BRM88_13500 PF13426 PAS domain BRM88_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_13500 PF00512 His Kinase A (phospho-acceptor) domain BRM88_13520 PF01584 CheW-like domain BRM88_13520 PF00072 Response regulator receiver domain BRM88_13530 PF00460 Flagella basal body rod protein BRM88_13530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_13535 PF03963 Flagellar hook capping protein - N-terminal region BRM88_13540 PF07559 Flagellar basal body protein FlaE BRM88_13540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_13540 PF00460 Flagella basal body rod protein BRM88_13545 PF00460 Flagella basal body rod protein BRM88_13545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_13555 PF00460 Flagella basal body rod protein BRM88_13555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_13560 PF02107 Flagellar L-ring protein BRM88_13565 PF02119 Flagellar P-ring protein BRM88_13570 PF10135 Rod binding protein BRM88_13570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BRM88_13575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRM88_13575 PF07196 Flagellin hook IN motif BRM88_13585 PF00700 Bacterial flagellin C-terminal helical region BRM88_13585 PF00669 Bacterial flagellin N-terminal helical region BRM88_13590 PF07195 Flagellar hook-associated protein 2 C-terminus BRM88_13590 PF07196 Flagellin hook IN motif BRM88_13590 PF02465 Flagellar hook-associated protein 2 N-terminus BRM88_13595 PF02561 Flagellar protein FliS BRM88_13610 PF00072 Response regulator receiver domain BRM88_13610 PF00196 Bacterial regulatory proteins, luxR family BRM88_13615 PF04552 Sigma-54, DNA binding domain BRM88_13615 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRM88_13615 PF04963 Sigma-54 factor, core binding domain BRM88_13620 PF00072 Response regulator receiver domain BRM88_13620 PF01339 CheB methylesterase BRM88_13625 PF00072 Response regulator receiver domain BRM88_13625 PF02954 Bacterial regulatory protein, Fis family BRM88_13625 PF00158 Sigma-54 interaction domain BRM88_13630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRM88_13640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM88_13640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM88_13675 PF00535 Glycosyl transferase family 2 BRM88_13675 PF00534 Glycosyl transferases group 1 BRM88_13685 PF02049 Flagellar hook-basal body complex protein FliE BRM88_13690 PF08345 Flagellar M-ring protein C-terminal BRM88_13690 PF01514 Secretory protein of YscJ/FliF family BRM88_13695 PF01706 FliG C-terminal domain BRM88_13695 PF14841 FliG middle domain BRM88_13695 PF14842 FliG N-terminal domain BRM88_13705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_13705 PF18269 T3SS EscN ATPase C-terminal domain BRM88_13725 PF02154 Flagellar motor switch protein FliM BRM88_13725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRM88_13730 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRM88_13735 PF04347 Flagellar biosynthesis protein, FliO BRM88_13740 PF00813 FliP family BRM88_13750 PF01313 Bacterial export proteins, family 3 BRM88_13755 PF01311 Bacterial export proteins, family 1 BRM88_13760 PF00990 Diguanylate cyclase, GGDEF domain BRM88_13760 PF13188 PAS domain BRM88_13760 PF00563 EAL domain BRM88_13760 PF03707 Bacterial signalling protein N terminal repeat BRM88_13765 PF03707 Bacterial signalling protein N terminal repeat BRM88_13765 PF13188 PAS domain BRM88_13765 PF00990 Diguanylate cyclase, GGDEF domain BRM88_13765 PF00563 EAL domain BRM88_13770 PF00563 EAL domain BRM88_13770 PF03707 Bacterial signalling protein N terminal repeat BRM88_13770 PF00990 Diguanylate cyclase, GGDEF domain BRM88_13775 PF01312 FlhB HrpN YscU SpaS Family BRM88_13780 PF00771 FHIPEP family BRM88_13785 PF00448 SRP54-type protein, GTPase domain BRM88_13790 PF10609 NUBPL iron-transfer P-loop NTPase BRM88_13795 PF04539 Sigma-70 region 3 BRM88_13795 PF04545 Sigma-70, region 4 BRM88_13795 PF04542 Sigma-70 region 2 BRM88_13800 PF00072 Response regulator receiver domain BRM88_13805 PF04344 Chemotaxis phosphatase, CheZ BRM88_13810 PF01584 CheW-like domain BRM88_13810 PF07194 P2 response regulator binding domain BRM88_13810 PF01627 Hpt domain BRM88_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_13810 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_13850 PF05598 Transposase domain (DUF772) BRM88_13850 PF01609 Transposase DDE domain BRM88_13860 PF05593 RHS Repeat BRM88_13860 PF03527 RHS protein BRM88_13870 PF01609 Transposase DDE domain BRM88_13870 PF05598 Transposase domain (DUF772) BRM88_13880 PF05598 Transposase domain (DUF772) BRM88_13880 PF01609 Transposase DDE domain BRM88_13920 PF00034 Cytochrome c BRM88_13975 PF00664 ABC transporter transmembrane region BRM88_13975 PF00005 ABC transporter BRM88_13980 PF00005 ABC transporter BRM88_13980 PF00664 ABC transporter transmembrane region BRM88_14005 PF01654 Cytochrome bd terminal oxidase subunit I BRM88_14035 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BRM88_14035 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BRM88_14040 PF00171 Aldehyde dehydrogenase family BRM88_14045 PF00696 Amino acid kinase family BRM88_14045 PF01472 PUA domain BRM88_14060 PF00206 Lyase BRM88_14065 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRM88_14075 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BRM88_14075 PF00696 Amino acid kinase family BRM88_14080 PF01546 Peptidase family M20/M25/M40 BRM88_14080 PF07687 Peptidase dimerisation domain BRM88_14090 PF00764 Arginosuccinate synthase BRM88_14095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRM88_14095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRM88_14105 PF01406 tRNA synthetases class I (C) catalytic domain BRM88_14105 PF09190 DALR domain BRM88_14110 PF02657 Fe-S metabolism associated domain BRM88_14125 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRM88_14130 PF01809 Putative membrane protein insertion efficiency factor BRM88_14135 PF01979 Amidohydrolase family BRM88_14140 PF08460 Bacterial SH3 domain BRM88_14140 PF01551 Peptidase family M23 BRM88_14185 PF01609 Transposase DDE domain BRM88_14185 PF05598 Transposase domain (DUF772) BRM88_14200 PF01095 Pectinesterase BRM88_14215 PF00295 Glycosyl hydrolases family 28 BRM88_14225 PF13419 Haloacid dehalogenase-like hydrolase BRM88_14235 PF01979 Amidohydrolase family BRM88_14245 PF01132 Elongation factor P (EF-P) OB domain BRM88_14245 PF09285 Elongation factor P, C-terminal BRM88_14245 PF08207 Elongation factor P (EF-P) KOW-like domain BRM88_14250 PF04055 Radical SAM superfamily BRM88_14255 PF00990 Diguanylate cyclase, GGDEF domain BRM88_14255 PF03707 Bacterial signalling protein N terminal repeat BRM88_14255 PF00563 EAL domain BRM88_14255 PF13188 PAS domain BRM88_14265 PF00588 SpoU rRNA Methylase family BRM88_14270 PF00459 Inositol monophosphatase family BRM88_14275 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM88_14275 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM88_14280 PF00545 ribonuclease BRM88_14305 PF00271 Helicase conserved C-terminal domain BRM88_14305 PF03880 DbpA RNA binding domain BRM88_14305 PF00270 DEAD/DEAH box helicase BRM88_14310 PF00156 Phosphoribosyl transferase domain BRM88_14315 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BRM88_14325 PF14497 Glutathione S-transferase, C-terminal domain BRM88_14325 PF02798 Glutathione S-transferase, N-terminal domain BRM88_14330 PF00313 'Cold-shock' DNA-binding domain BRM88_14335 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BRM88_14340 PF07152 YaeQ protein BRM88_14350 PF00990 Diguanylate cyclase, GGDEF domain BRM88_14350 PF00072 Response regulator receiver domain BRM88_14350 PF00563 EAL domain BRM88_14355 PF01435 Peptidase family M48 BRM88_14360 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM88_14365 PF00106 short chain dehydrogenase BRM88_14370 PF05233 PHB accumulation regulatory domain BRM88_14370 PF07879 PHB/PHA accumulation regulator DNA-binding domain BRM88_14390 PF08676 MutL C terminal dimerisation domain BRM88_14390 PF01119 DNA mismatch repair protein, C-terminal domain BRM88_14395 PF01520 N-acetylmuramoyl-L-alanine amidase BRM88_14395 PF11741 AMIN domain BRM88_14400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BRM88_14405 PF01256 Carbohydrate kinase BRM88_14405 PF03853 YjeF-related protein N-terminus BRM88_14410 PF08331 Domain of unknown function (DUF1730) BRM88_14415 PF13742 OB-fold nucleic acid binding domain BRM88_14415 PF02601 Exonuclease VII, large subunit BRM88_14430 PF03781 Sulfatase-modifying factor enzyme 1 BRM88_14445 PF00570 HRDC domain BRM88_14445 PF01612 3'-5' exonuclease BRM88_14450 PF04679 ATP dependent DNA ligase C terminal region BRM88_14450 PF01068 ATP dependent DNA ligase domain BRM88_14450 PF04679 ATP dependent DNA ligase C terminal region BRM88_14450 PF01068 ATP dependent DNA ligase domain BRM88_14450 PF13298 DNA polymerase Ligase (LigD) BRM88_14450 PF13298 DNA polymerase Ligase (LigD) BRM88_14500 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRM88_14500 PF01619 Proline dehydrogenase BRM88_14500 PF14850 DNA-binding domain of Proline dehydrogenase BRM88_14500 PF00171 Aldehyde dehydrogenase family BRM88_14515 PF00872 Transposase, Mutator family BRM88_14560 PF04386 Stringent starvation protein B BRM88_14565 PF02798 Glutathione S-transferase, N-terminal domain BRM88_14565 PF00043 Glutathione S-transferase, C-terminal domain BRM88_14570 PF02167 Cytochrome C1 family BRM88_14575 PF00033 Cytochrome b/b6/petB BRM88_14575 PF00032 Cytochrome b(C-terminal)/b6/petD BRM88_14580 PF00355 Rieske [2Fe-2S] domain BRM88_14580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BRM88_14590 PF01464 Transglycosylase SLT domain BRM88_14610 PF01938 TRAM domain BRM88_14610 PF00919 Uncharacterized protein family UPF0004 BRM88_14610 PF04055 Radical SAM superfamily BRM88_14615 PF02562 PhoH-like protein BRM88_14625 PF02130 Uncharacterized protein family UPF0054 BRM88_14635 PF03471 Transporter associated domain BRM88_14635 PF00571 CBS domain BRM88_14650 PF00171 Aldehyde dehydrogenase family BRM88_14660 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_14665 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_14670 PF00005 ABC transporter BRM88_14670 PF08402 TOBE domain BRM88_14675 PF02321 Outer membrane efflux protein BRM88_14680 PF07690 Major Facilitator Superfamily BRM88_14685 PF13533 Biotin-lipoyl like BRM88_14700 PF00120 Glutamine synthetase, catalytic domain BRM88_14710 PF00120 Glutamine synthetase, catalytic domain BRM88_14715 PF01266 FAD dependent oxidoreductase BRM88_14720 PF00990 Diguanylate cyclase, GGDEF domain BRM88_14720 PF00072 Response regulator receiver domain BRM88_14725 PF00083 Sugar (and other) transporter BRM88_14725 PF07690 Major Facilitator Superfamily BRM88_14735 PF00384 Molybdopterin oxidoreductase BRM88_14740 PF02634 FdhD/NarQ family BRM88_14745 PF07690 Major Facilitator Superfamily BRM88_14765 PF00202 Aminotransferase class-III BRM88_14770 PF00005 ABC transporter BRM88_14780 PF04286 Protein of unknown function (DUF445) BRM88_14785 PF00072 Response regulator receiver domain BRM88_14785 PF00512 His Kinase A (phospho-acceptor) domain BRM88_14785 PF01627 Hpt domain BRM88_14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_14785 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRM88_14785 PF00672 HAMP domain BRM88_14790 PF00072 Response regulator receiver domain BRM88_14795 PF01609 Transposase DDE domain BRM88_14795 PF05598 Transposase domain (DUF772) BRM88_14805 PF05088 Bacterial NAD-glutamate dehydrogenase BRM88_14815 PF00529 HlyD membrane-fusion protein of T1SS BRM88_14815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_14820 PF00873 AcrB/AcrD/AcrF family BRM88_14845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRM88_14845 PF00381 PTS HPr component phosphorylation site BRM88_14845 PF02896 PEP-utilising enzyme, TIM barrel domain BRM88_14845 PF05524 PEP-utilising enzyme, N-terminal BRM88_14845 PF00391 PEP-utilising enzyme, mobile domain BRM88_14850 PF00294 pfkB family carbohydrate kinase BRM88_14855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BRM88_14865 PF05598 Transposase domain (DUF772) BRM88_14865 PF01609 Transposase DDE domain BRM88_14875 PF01609 Transposase DDE domain BRM88_14875 PF05598 Transposase domain (DUF772) BRM88_14930 PF16671 Actin cross-linking domain BRM88_14930 PF04717 Type VI secretion system, phage-baseplate injector BRM88_14945 PF03377 TAL effector repeat BRM88_14950 PF05598 Transposase domain (DUF772) BRM88_14950 PF01609 Transposase DDE domain BRM88_14955 PF04717 Type VI secretion system, phage-baseplate injector BRM88_14955 PF16671 Actin cross-linking domain BRM88_15015 PF05598 Transposase domain (DUF772) BRM88_15015 PF01609 Transposase DDE domain BRM88_15045 PF07715 TonB-dependent Receptor Plug Domain BRM88_15045 PF00593 TonB dependent receptor BRM88_15055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM88_15055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM88_15065 PF07715 TonB-dependent Receptor Plug Domain BRM88_15065 PF00593 TonB dependent receptor BRM88_15075 PF01618 MotA/TolQ/ExbB proton channel family BRM88_15080 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRM88_15080 PF00691 OmpA family BRM88_15085 PF13614 AAA domain BRM88_15090 PF01584 CheW-like domain BRM88_15100 PF00072 Response regulator receiver domain BRM88_15105 PF09078 CheY binding BRM88_15105 PF01584 CheW-like domain BRM88_15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_15105 PF01627 Hpt domain BRM88_15105 PF02895 Signal transducing histidine kinase, homodimeric domain BRM88_15125 PF00672 HAMP domain BRM88_15125 PF02203 Tar ligand binding domain homologue BRM88_15125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15140 PF00672 HAMP domain BRM88_15140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15140 PF02203 Tar ligand binding domain homologue BRM88_15150 PF02203 Tar ligand binding domain homologue BRM88_15150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15150 PF00672 HAMP domain BRM88_15160 PF00672 HAMP domain BRM88_15160 PF02203 Tar ligand binding domain homologue BRM88_15160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15165 PF00672 HAMP domain BRM88_15165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15165 PF02203 Tar ligand binding domain homologue BRM88_15170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15170 PF02203 Tar ligand binding domain homologue BRM88_15170 PF00672 HAMP domain BRM88_15175 PF00672 HAMP domain BRM88_15175 PF02203 Tar ligand binding domain homologue BRM88_15175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15190 PF07317 Flagellar regulator YcgR BRM88_15190 PF07238 PilZ domain BRM88_15195 PF01584 CheW-like domain BRM88_15220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRM88_15220 PF00672 HAMP domain BRM88_15220 PF02203 Tar ligand binding domain homologue BRM88_15225 PF01739 CheR methyltransferase, SAM binding domain BRM88_15225 PF03705 CheR methyltransferase, all-alpha domain BRM88_15230 PF03975 CheD chemotactic sensory transduction BRM88_15235 PF00072 Response regulator receiver domain BRM88_15235 PF01339 CheB methylesterase BRM88_15240 PF03707 Bacterial signalling protein N terminal repeat BRM88_15240 PF00563 EAL domain BRM88_15240 PF00990 Diguanylate cyclase, GGDEF domain BRM88_15255 PF00561 alpha/beta hydrolase fold BRM88_15260 PF00330 Aconitase family (aconitate hydratase) BRM88_15260 PF06434 Aconitate hydratase 2 N-terminus BRM88_15260 PF11791 Aconitate B N-terminal domain BRM88_15275 PF00694 Aconitase C-terminal domain BRM88_15275 PF00330 Aconitase family (aconitate hydratase) BRM88_15285 PF00501 AMP-binding enzyme BRM88_15285 PF13193 AMP-binding enzyme C-terminal domain BRM88_15290 PF00378 Enoyl-CoA hydratase/isomerase BRM88_15295 PF01627 Hpt domain BRM88_15295 PF00512 His Kinase A (phospho-acceptor) domain BRM88_15295 PF00072 Response regulator receiver domain BRM88_15295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_15305 PF00072 Response regulator receiver domain BRM88_15310 PF01336 OB-fold nucleic acid binding domain BRM88_15310 PF00152 tRNA synthetases class II (D, K and N) BRM88_15335 PF13542 Helix-turn-helix domain of transposase family ISL3 BRM88_15335 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 BRM88_15335 PF01610 Transposase BRM88_15370 PF17768 RecJ OB domain BRM88_15370 PF02272 DHHA1 domain BRM88_15370 PF01368 DHH family BRM88_15380 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM88_15380 PF03449 Transcription elongation factor, N-terminal BRM88_15385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM88_15385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BRM88_15385 PF02142 MGS-like domain BRM88_15395 PF00117 Glutamine amidotransferase class-I BRM88_15395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BRM88_15400 PF05173 Dihydrodipicolinate reductase, C-terminus BRM88_15400 PF01113 Dihydrodipicolinate reductase, N-terminus BRM88_15410 PF03475 3-alpha domain BRM88_15410 PF03473 MOSC domain BRM88_15415 PF00155 Aminotransferase class I and II BRM88_15435 PF07664 Ferrous iron transport protein B C terminus BRM88_15435 PF02421 Ferrous iron transport protein B BRM88_15435 PF07670 Nucleoside recognition BRM88_15445 PF00378 Enoyl-CoA hydratase/isomerase BRM88_15455 PF00682 HMGL-like BRM88_15460 PF00106 short chain dehydrogenase BRM88_15465 PF09285 Elongation factor P, C-terminal BRM88_15465 PF08207 Elongation factor P (EF-P) KOW-like domain BRM88_15465 PF01132 Elongation factor P (EF-P) OB domain BRM88_15485 PF00083 Sugar (and other) transporter BRM88_15495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BRM88_15495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BRM88_15505 PF17137 Domain of unknown function (DUF5110) BRM88_15505 PF01055 Glycosyl hydrolases family 31 BRM88_15505 PF16338 Domain of unknown function (DUF4968) BRM88_15515 PF03466 LysR substrate binding domain BRM88_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_15520 PF01081 KDPG and KHG aldolase BRM88_15525 PF13378 Enolase C-terminal domain-like BRM88_15525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_15530 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM88_15535 PF05035 2-keto-3-deoxy-galactonokinase BRM88_15540 PF00037 4Fe-4S binding domain BRM88_15540 PF11953 Domain of unknown function (DUF3470) BRM88_15550 PF00701 Dihydrodipicolinate synthetase family BRM88_15565 PF00578 AhpC/TSA family BRM88_15570 PF13638 PIN domain BRM88_15570 PF02562 PhoH-like protein BRM88_15580 PF08543 Phosphomethylpyrimidine kinase BRM88_15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_15610 PF03466 LysR substrate binding domain BRM88_15615 PF17954 Quercetinase C-terminal cupin domain BRM88_15615 PF02678 Pirin BRM88_15640 PF00772 DnaB-like helicase N terminal domain BRM88_15640 PF03796 DnaB-like helicase C terminal domain BRM88_15665 PF02599 Global regulator protein family BRM88_15670 PF02272 DHHA1 domain BRM88_15670 PF01411 tRNA synthetases class II (A) BRM88_15670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRM88_15675 PF02631 RecX family BRM88_15685 PF00154 recA bacterial DNA recombination protein BRM88_15690 PF01726 LexA DNA binding domain BRM88_15690 PF00717 Peptidase S24-like BRM88_15695 PF03109 ABC1 family BRM88_15700 PF02464 Competence-damaged protein BRM88_15705 PF01926 50S ribosome-binding GTPase BRM88_15705 PF13167 GTP-binding GTPase N-terminal BRM88_15705 PF16360 GTP-binding GTPase Middle Region BRM88_15710 PF17209 Hfq protein BRM88_15720 PF00809 Pterin binding enzyme BRM88_15725 PF17862 AAA+ lid domain BRM88_15725 PF06480 FtsH Extracellular BRM88_15725 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_15725 PF01434 Peptidase family M41 BRM88_15730 PF01728 FtsJ-like methyltransferase BRM88_15735 PF01985 CRS1 / YhbY (CRM) domain BRM88_15745 PF01551 Peptidase family M23 BRM88_15745 PF01476 LysM domain BRM88_15750 PF09335 SNARE associated Golgi protein BRM88_15760 PF01975 Survival protein SurE BRM88_15765 PF01713 Smr domain BRM88_15775 PF01142 tRNA pseudouridine synthase D (TruD) BRM88_15780 PF02542 YgbB family BRM88_15790 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BRM88_15795 PF04977 Septum formation initiator BRM88_15800 PF03952 Enolase, N-terminal domain BRM88_15800 PF00113 Enolase, C-terminal TIM barrel domain BRM88_15810 PF00793 DAHP synthetase I family BRM88_15815 PF00117 Glutamine amidotransferase class-I BRM88_15815 PF06418 CTP synthase N-terminus BRM88_15825 PF01751 Toprim domain BRM88_15825 PF00204 DNA gyrase B BRM88_15825 PF00986 DNA gyrase B subunit, carboxyl terminus BRM88_15825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_15840 PF02698 DUF218 domain BRM88_15845 PF01384 Phosphate transporter family BRM88_15860 PF00571 CBS domain BRM88_15860 PF01595 Cyclin M transmembrane N-terminal domain BRM88_15860 PF03471 Transporter associated domain BRM88_15875 PF00296 Luciferase-like monooxygenase BRM88_15895 PF07690 Major Facilitator Superfamily BRM88_15905 PF00664 ABC transporter transmembrane region BRM88_15905 PF00005 ABC transporter BRM88_15910 PF00005 ABC transporter BRM88_15930 PF13579 Glycosyl transferase 4-like domain BRM88_15930 PF00534 Glycosyl transferases group 1 BRM88_15950 PF08241 Methyltransferase domain BRM88_15965 PF00535 Glycosyl transferase family 2 BRM88_15970 PF01943 Polysaccharide biosynthesis protein BRM88_15975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRM88_15995 PF05523 WxcM-like, C-terminal BRM88_16010 PF00034 Cytochrome c BRM88_16020 PF08281 Sigma-70, region 4 BRM88_16020 PF04542 Sigma-70 region 2 BRM88_16030 PF00082 Subtilase family BRM88_16035 PF01578 Cytochrome C assembly protein BRM88_16040 PF04995 Heme exporter protein D (CcmD) BRM88_16045 PF03100 CcmE BRM88_16050 PF01578 Cytochrome C assembly protein BRM88_16050 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRM88_16055 PF08534 Redoxin BRM88_16060 PF03918 Cytochrome C biogenesis protein BRM88_16070 PF03377 TAL effector repeat BRM88_16090 PF03377 TAL effector repeat BRM88_16105 PF03377 TAL effector repeat BRM88_16125 PF00873 AcrB/AcrD/AcrF family BRM88_16130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_16130 PF00529 HlyD membrane-fusion protein of T1SS BRM88_16180 PF00072 Response regulator receiver domain BRM88_16180 PF00486 Transcriptional regulatory protein, C terminal BRM88_16185 PF03150 Di-haem cytochrome c peroxidase BRM88_16185 PF00034 Cytochrome c BRM88_16190 PF00512 His Kinase A (phospho-acceptor) domain BRM88_16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_16195 PF03466 LysR substrate binding domain BRM88_16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_16220 PF00069 Protein kinase domain BRM88_16260 PF16671 Actin cross-linking domain BRM88_16260 PF04717 Type VI secretion system, phage-baseplate injector BRM88_16280 PF07724 AAA domain (Cdc48 subfamily) BRM88_16280 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_16280 PF17871 AAA lid domain BRM88_16280 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_16305 PF05638 Type VI secretion system effector, Hcp BRM88_16335 PF05598 Transposase domain (DUF772) BRM88_16335 PF01609 Transposase DDE domain BRM88_16355 PF01609 Transposase DDE domain BRM88_16355 PF05598 Transposase domain (DUF772) BRM88_16400 PF01106 NifU-like domain BRM88_16405 PF01329 Pterin 4 alpha carbinolamine dehydratase BRM88_16415 PF02535 ZIP Zinc transporter BRM88_16420 PF02535 ZIP Zinc transporter BRM88_16425 PF11737 Protein of unknown function (DUF3300) BRM88_16430 PF01479 S4 domain BRM88_16430 PF00849 RNA pseudouridylate synthase BRM88_16435 PF12111 Polyribonucleotide phosphorylase C terminal BRM88_16435 PF00575 S1 RNA binding domain BRM88_16435 PF10150 Ribonuclease E/G family BRM88_16450 PF00196 Bacterial regulatory proteins, luxR family BRM88_16450 PF00072 Response regulator receiver domain BRM88_16460 PF05598 Transposase domain (DUF772) BRM88_16460 PF01609 Transposase DDE domain BRM88_16470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_16480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRM88_16480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRM88_16480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRM88_16490 PF01648 4'-phosphopantetheinyl transferase superfamily BRM88_16490 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BRM88_16520 PF05598 Transposase domain (DUF772) BRM88_16520 PF01609 Transposase DDE domain BRM88_16525 PF05598 Transposase domain (DUF772) BRM88_16525 PF01609 Transposase DDE domain BRM88_16555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM88_16555 PF14824 Sirohaem biosynthesis protein central BRM88_16555 PF10414 Sirohaem synthase dimerisation region BRM88_16580 PF12804 MobA-like NTP transferase domain BRM88_16585 PF00994 Probable molybdopterin binding domain BRM88_16585 PF03454 MoeA C-terminal region (domain IV) BRM88_16585 PF03453 MoeA N-terminal region (domain I and II) BRM88_16655 PF00872 Transposase, Mutator family BRM88_16660 PF07715 TonB-dependent Receptor Plug Domain BRM88_16660 PF00593 TonB dependent receptor BRM88_16685 PF04616 Glycosyl hydrolases family 43 BRM88_16690 PF07532 Bacterial Ig-like domain (group 4) BRM88_16695 PF00593 TonB dependent receptor BRM88_16695 PF07715 TonB-dependent Receptor Plug Domain BRM88_16705 PF00082 Subtilase family BRM88_16705 PF09286 Pro-kumamolisin, activation domain BRM88_16745 PF13520 Amino acid permease BRM88_16760 PF01321 Creatinase/Prolidase N-terminal domain BRM88_16760 PF00557 Metallopeptidase family M24 BRM88_16765 PF00171 Aldehyde dehydrogenase family BRM88_16770 PF00701 Dihydrodipicolinate synthetase family BRM88_16775 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_16775 PF04324 BFD-like [2Fe-2S] binding domain BRM88_16785 PF01266 FAD dependent oxidoreductase BRM88_16790 PF05544 Proline racemase BRM88_16800 PF00448 SRP54-type protein, GTPase domain BRM88_16800 PF02881 SRP54-type protein, helical bundle domain BRM88_16815 PF14815 NUDIX domain BRM88_16815 PF00633 Helix-hairpin-helix motif BRM88_16815 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_16820 PF04362 Bacterial Fe(2+) trafficking BRM88_16825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_16825 PF00072 Response regulator receiver domain BRM88_16825 PF13426 PAS domain BRM88_16915 PF08212 Lipocalin-like domain BRM88_16945 PF03808 Glycosyl transferase WecB/TagA/CpsF family BRM88_16960 PF14667 Polysaccharide biosynthesis C-terminal domain BRM88_16970 PF00534 Glycosyl transferases group 1 BRM88_16970 PF13439 Glycosyltransferase Family 4 BRM88_16990 PF02397 Bacterial sugar transferase BRM88_17010 PF13411 MerR HTH family regulatory protein BRM88_17015 PF00216 Bacterial DNA-binding protein BRM88_17020 PF03483 B3/4 domain BRM88_17020 PF03147 Ferredoxin-fold anticodon binding domain BRM88_17020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BRM88_17020 PF03484 tRNA synthetase B5 domain BRM88_17020 PF01588 Putative tRNA binding domain BRM88_17025 PF01409 tRNA synthetases class II core domain (F) BRM88_17025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BRM88_17030 PF00453 Ribosomal protein L20 BRM88_17035 PF01632 Ribosomal protein L35 BRM88_17040 PF00707 Translation initiation factor IF-3, C-terminal domain BRM88_17040 PF05198 Translation initiation factor IF-3, N-terminal domain BRM88_17045 PF02824 TGS domain BRM88_17045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRM88_17045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRM88_17045 PF03129 Anticodon binding domain BRM88_17075 PF00271 Helicase conserved C-terminal domain BRM88_17075 PF17757 UvrB interaction domain BRM88_17075 PF12344 Ultra-violet resistance protein B BRM88_17075 PF02151 UvrB/uvrC motif BRM88_17075 PF04851 Type III restriction enzyme, res subunit BRM88_17080 PF07963 Prokaryotic N-terminal methylation motif BRM88_17080 PF00114 Pilin (bacterial filament) BRM88_17090 PF00114 Pilin (bacterial filament) BRM88_17090 PF07963 Prokaryotic N-terminal methylation motif BRM88_17095 PF05567 Neisseria PilC beta-propeller domain BRM88_17115 PF07963 Prokaryotic N-terminal methylation motif BRM88_17115 PF12019 Type II transport protein GspH BRM88_17120 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BRM88_17120 PF11892 Domain of unknown function (DUF3412) BRM88_17120 PF03641 Possible lysine decarboxylase BRM88_17125 PF00593 TonB dependent receptor BRM88_17135 PF01914 MarC family integral membrane protein BRM88_17145 PF00462 Glutaredoxin BRM88_17150 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRM88_17150 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRM88_17155 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BRM88_17155 PF02222 ATP-grasp domain BRM88_17160 PF00731 AIR carboxylase BRM88_17170 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BRM88_17170 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BRM88_17180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BRM88_17180 PF01138 3' exoribonuclease family, domain 1 BRM88_17180 PF03725 3' exoribonuclease family, domain 2 BRM88_17180 PF00575 S1 RNA binding domain BRM88_17180 PF00013 KH domain BRM88_17185 PF00312 Ribosomal protein S15 BRM88_17190 PF01509 TruB family pseudouridylate synthase (N terminal domain) BRM88_17190 PF16198 tRNA pseudouridylate synthase B C-terminal domain BRM88_17190 PF09157 Pseudouridine synthase II TruB, C-terminal BRM88_17195 PF02033 Ribosome-binding factor A BRM88_17200 PF08364 Bacterial translation initiation factor IF-2 associated region BRM88_17200 PF11987 Translation-initiation factor 2 BRM88_17200 PF00009 Elongation factor Tu GTP binding domain BRM88_17200 PF04760 Translation initiation factor IF-2, N-terminal region BRM88_17205 PF08529 NusA N-terminal domain BRM88_17205 PF13184 NusA-like KH domain BRM88_17205 PF00575 S1 RNA binding domain BRM88_17210 PF17384 RimP C-terminal SH3 domain BRM88_17210 PF02576 RimP N-terminal domain BRM88_17220 PF00361 Proton-conducting membrane transporter BRM88_17225 PF00361 Proton-conducting membrane transporter BRM88_17225 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BRM88_17230 PF00361 Proton-conducting membrane transporter BRM88_17230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM88_17235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRM88_17240 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BRM88_17245 PF12838 4Fe-4S dicluster domain BRM88_17250 PF00146 NADH dehydrogenase BRM88_17255 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BRM88_17255 PF00384 Molybdopterin oxidoreductase BRM88_17255 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BRM88_17260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BRM88_17260 PF10531 SLBB domain BRM88_17260 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BRM88_17270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BRM88_17275 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BRM88_17280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BRM88_17285 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BRM88_17300 PF00121 Triosephosphate isomerase BRM88_17335 PF00990 Diguanylate cyclase, GGDEF domain BRM88_17335 PF00563 EAL domain BRM88_17335 PF03707 Bacterial signalling protein N terminal repeat BRM88_17350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRM88_17350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRM88_17350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRM88_17350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRM88_17355 PF17848 Acetyl-coA carboxylase zinc finger domain BRM88_17355 PF01039 Carboxyl transferase domain BRM88_17360 PF00290 Tryptophan synthase alpha chain BRM88_17370 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_17375 PF03466 LysR substrate binding domain BRM88_17375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_17380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BRM88_17385 PF01416 tRNA pseudouridine synthase BRM88_17405 PF02774 Semialdehyde dehydrogenase, dimerisation domain BRM88_17405 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRM88_17410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM88_17410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM88_17415 PF01264 Chorismate synthase BRM88_17420 PF05175 Methyltransferase small domain BRM88_17425 PF02630 SCO1/SenC BRM88_17430 PF02666 Phosphatidylserine decarboxylase BRM88_17475 PF03449 Transcription elongation factor, N-terminal BRM88_17475 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM88_17480 PF04055 Radical SAM superfamily BRM88_17480 PF00919 Uncharacterized protein family UPF0004 BRM88_17480 PF18693 TRAM domain BRM88_17485 PF01738 Dienelactone hydrolase family BRM88_17505 PF00692 dUTPase BRM88_17510 PF10609 NUBPL iron-transfer P-loop NTPase BRM88_17555 PF01266 FAD dependent oxidoreductase BRM88_17560 PF04235 Protein of unknown function (DUF418) BRM88_17565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRM88_17570 PF00877 NlpC/P60 family BRM88_17575 PF00877 NlpC/P60 family BRM88_17590 PF00375 Sodium:dicarboxylate symporter family BRM88_17595 PF00245 Alkaline phosphatase BRM88_17600 PF09179 TilS substrate binding domain BRM88_17600 PF01171 PP-loop family BRM88_17600 PF11734 TilS substrate C-terminal domain BRM88_17605 PF02609 Exonuclease VII small subunit BRM88_17610 PF00348 Polyprenyl synthetase BRM88_17635 PF01523 Putative modulator of DNA gyrase BRM88_17640 PF04751 Protein of unknown function (DUF615) BRM88_17645 PF01523 Putative modulator of DNA gyrase BRM88_17655 PF13502 AsmA-like C-terminal region BRM88_17655 PF13116 Protein of unknown function BRM88_17660 PF00575 S1 RNA binding domain BRM88_17660 PF10150 Ribonuclease E/G family BRM88_17665 PF02545 Maf-like protein BRM88_17670 PF04402 Protein of unknown function (DUF541) BRM88_17695 PF02590 Predicted SPOUT methyltransferase BRM88_17720 PF01467 Cytidylyltransferase-like BRM88_17740 PF00133 tRNA synthetases class I (I, L, M and V) BRM88_17740 PF13603 Leucyl-tRNA synthetase, Domain 2 BRM88_17740 PF08264 Anticodon-binding domain of tRNA BRM88_17750 PF00085 Thioredoxin BRM88_17830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRM88_17830 PF00128 Alpha amylase, catalytic domain BRM88_17835 PF01609 Transposase DDE domain BRM88_17835 PF05598 Transposase domain (DUF772) BRM88_17840 PF05598 Transposase domain (DUF772) BRM88_17840 PF01609 Transposase DDE domain BRM88_17920 PF00657 GDSL-like Lipase/Acylhydrolase BRM88_17920 PF03797 Autotransporter beta-domain BRM88_17935 PF05690 Thiazole biosynthesis protein ThiG BRM88_17945 PF02390 Putative methyltransferase BRM88_17950 PF02080 TrkA-C domain BRM88_17950 PF03600 Citrate transporter BRM88_17975 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRM88_17980 PF01741 Large-conductance mechanosensitive channel, MscL BRM88_18005 PF00588 SpoU rRNA Methylase family BRM88_18005 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRM88_18035 PF11838 ERAP1-like C-terminal domain BRM88_18035 PF01433 Peptidase family M1 domain BRM88_18040 PF00873 AcrB/AcrD/AcrF family BRM88_18045 PF00529 HlyD membrane-fusion protein of T1SS BRM88_18045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_18055 PF00009 Elongation factor Tu GTP binding domain BRM88_18060 PF01507 Phosphoadenosine phosphosulfate reductase family BRM88_18065 PF00667 FAD binding domain BRM88_18065 PF00175 Oxidoreductase NAD-binding domain BRM88_18065 PF00258 Flavodoxin BRM88_18070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BRM88_18070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BRM88_18075 PF01507 Phosphoadenosine phosphosulfate reductase family BRM88_18095 PF00072 Response regulator receiver domain BRM88_18095 PF00672 HAMP domain BRM88_18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_18095 PF00512 His Kinase A (phospho-acceptor) domain BRM88_18095 PF01627 Hpt domain BRM88_18120 PF03466 LysR substrate binding domain BRM88_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_18125 PF10414 Sirohaem synthase dimerisation region BRM88_18125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM88_18125 PF14824 Sirohaem biosynthesis protein central BRM88_18130 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_18140 PF01661 Macro domain BRM88_18145 PF00274 Fructose-bisphosphate aldolase class-I BRM88_18150 PF02887 Pyruvate kinase, alpha/beta domain BRM88_18150 PF00224 Pyruvate kinase, barrel domain BRM88_18160 PF00162 Phosphoglycerate kinase BRM88_18195 PF06628 Catalase-related immune-responsive BRM88_18195 PF18011 C-terminal domain found in long catalases BRM88_18195 PF00199 Catalase BRM88_18220 PF01609 Transposase DDE domain BRM88_18220 PF05598 Transposase domain (DUF772) BRM88_18240 PF12833 Helix-turn-helix domain BRM88_18240 PF02311 AraC-like ligand binding domain BRM88_18270 PF07676 WD40-like Beta Propeller Repeat BRM88_18270 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRM88_18270 PF00326 Prolyl oligopeptidase family BRM88_18295 PF05598 Transposase domain (DUF772) BRM88_18295 PF01609 Transposase DDE domain BRM88_18300 PF03169 OPT oligopeptide transporter protein BRM88_18320 PF02811 PHP domain BRM88_18320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRM88_18320 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRM88_18320 PF14579 Helix-hairpin-helix motif BRM88_18340 PF01726 LexA DNA binding domain BRM88_18340 PF00717 Peptidase S24-like BRM88_18370 PF13456 Reverse transcriptase-like BRM88_18370 PF00300 Histidine phosphatase superfamily (branch 1) BRM88_18405 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRM88_18405 PF18766 SWI2/SNF2 ATPase BRM88_18405 PF11867 Domain of unknown function (DUF3387) BRM88_18425 PF05598 Transposase domain (DUF772) BRM88_18425 PF01609 Transposase DDE domain BRM88_18430 PF01420 Type I restriction modification DNA specificity domain BRM88_18435 PF01609 Transposase DDE domain BRM88_18435 PF05598 Transposase domain (DUF772) BRM88_18445 PF08780 Nucleotidyltransferase substrate binding protein like BRM88_18450 PF02384 N-6 DNA Methylase BRM88_18470 PF00271 Helicase conserved C-terminal domain BRM88_18470 PF08463 EcoEI R protein C-terminal BRM88_18470 PF04851 Type III restriction enzyme, res subunit BRM88_18470 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRM88_18480 PF02384 N-6 DNA Methylase BRM88_18490 PF01420 Type I restriction modification DNA specificity domain BRM88_18585 PF16671 Actin cross-linking domain BRM88_18585 PF04717 Type VI secretion system, phage-baseplate injector BRM88_18595 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_18595 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_18595 PF07724 AAA domain (Cdc48 subfamily) BRM88_18595 PF17871 AAA lid domain BRM88_18650 PF04717 Type VI secretion system, phage-baseplate injector BRM88_18650 PF16671 Actin cross-linking domain BRM88_18685 PF04717 Type VI secretion system, phage-baseplate injector BRM88_18690 PF03781 Sulfatase-modifying factor enzyme 1 BRM88_18740 PF04717 Type VI secretion system, phage-baseplate injector BRM88_18755 PF04972 BON domain BRM88_18755 PF00691 OmpA family BRM88_18795 PF02222 ATP-grasp domain BRM88_18820 PF00730 HhH-GPD superfamily base excision DNA repair protein BRM88_18835 PF00072 Response regulator receiver domain BRM88_18835 PF00196 Bacterial regulatory proteins, luxR family BRM88_18840 PF07730 Histidine kinase BRM88_18855 PF05209 Septum formation inhibitor MinC, N-terminal domain BRM88_18855 PF03775 Septum formation inhibitor MinC, C-terminal domain BRM88_18860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BRM88_18865 PF03776 Septum formation topological specificity factor MinE BRM88_18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_18875 PF00512 His Kinase A (phospho-acceptor) domain BRM88_18875 PF08521 Two-component sensor kinase N-terminal BRM88_18880 PF00072 Response regulator receiver domain BRM88_18880 PF00486 Transcriptional regulatory protein, C terminal BRM88_18885 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BRM88_18895 PF08019 Phosphoethanolamine transferase EptA/EptB BRM88_18895 PF00884 Sulfatase BRM88_18915 PF00664 ABC transporter transmembrane region BRM88_18915 PF00005 ABC transporter BRM88_18915 PF03412 Peptidase C39 family BRM88_18935 PF02347 Glycine cleavage system P-protein BRM88_18990 PF01196 Ribosomal protein L17 BRM88_18995 PF01000 RNA polymerase Rpb3/RpoA insert domain BRM88_18995 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BRM88_18995 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BRM88_19000 PF00163 Ribosomal protein S4/S9 N-terminal domain BRM88_19000 PF01479 S4 domain BRM88_19005 PF00411 Ribosomal protein S11 BRM88_19010 PF00416 Ribosomal protein S13/S18 BRM88_19015 PF00344 SecY translocase BRM88_19020 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BRM88_19025 PF00327 Ribosomal protein L30p/L7e BRM88_19030 PF00333 Ribosomal protein S5, N-terminal domain BRM88_19030 PF03719 Ribosomal protein S5, C-terminal domain BRM88_19035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BRM88_19040 PF00347 Ribosomal protein L6 BRM88_19045 PF00410 Ribosomal protein S8 BRM88_19050 PF00253 Ribosomal protein S14p/S29e BRM88_19055 PF00281 Ribosomal protein L5 BRM88_19055 PF00673 ribosomal L5P family C-terminus BRM88_19060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BRM88_19060 PF00467 KOW motif BRM88_19065 PF00238 Ribosomal protein L14p/L23e BRM88_19070 PF00366 Ribosomal protein S17 BRM88_19075 PF00831 Ribosomal L29 protein BRM88_19080 PF00252 Ribosomal protein L16p/L10e BRM88_19085 PF07650 KH domain BRM88_19085 PF00189 Ribosomal protein S3, C-terminal domain BRM88_19090 PF00237 Ribosomal protein L22p/L17e BRM88_19095 PF00203 Ribosomal protein S19 BRM88_19100 PF00181 Ribosomal Proteins L2, RNA binding domain BRM88_19100 PF03947 Ribosomal Proteins L2, C-terminal domain BRM88_19105 PF00276 Ribosomal protein L23 BRM88_19110 PF00573 Ribosomal protein L4/L1 family BRM88_19115 PF00297 Ribosomal protein L3 BRM88_19120 PF00338 Ribosomal protein S10p/S20e BRM88_19135 PF03144 Elongation factor Tu domain 2 BRM88_19135 PF00009 Elongation factor Tu GTP binding domain BRM88_19135 PF03143 Elongation factor Tu C-terminal domain BRM88_19140 PF14492 Elongation Factor G, domain II BRM88_19140 PF00679 Elongation factor G C-terminus BRM88_19140 PF00009 Elongation factor Tu GTP binding domain BRM88_19140 PF03764 Elongation factor G, domain IV BRM88_19140 PF03144 Elongation factor Tu domain 2 BRM88_19145 PF00177 Ribosomal protein S7p/S5e BRM88_19150 PF00164 Ribosomal protein S12/S23 BRM88_19155 PF04998 RNA polymerase Rpb1, domain 5 BRM88_19155 PF05000 RNA polymerase Rpb1, domain 4 BRM88_19155 PF04983 RNA polymerase Rpb1, domain 3 BRM88_19155 PF00623 RNA polymerase Rpb1, domain 2 BRM88_19155 PF04997 RNA polymerase Rpb1, domain 1 BRM88_19160 PF00562 RNA polymerase Rpb2, domain 6 BRM88_19160 PF04565 RNA polymerase Rpb2, domain 3 BRM88_19160 PF10385 RNA polymerase beta subunit external 1 domain BRM88_19160 PF04561 RNA polymerase Rpb2, domain 2 BRM88_19160 PF04563 RNA polymerase beta subunit BRM88_19160 PF04560 RNA polymerase Rpb2, domain 7 BRM88_19165 PF16320 Ribosomal protein L7/L12 dimerisation domain BRM88_19165 PF00542 Ribosomal protein L7/L12 C-terminal domain BRM88_19170 PF00466 Ribosomal protein L10 BRM88_19175 PF00687 Ribosomal protein L1p/L10e family BRM88_19180 PF00298 Ribosomal protein L11, RNA binding domain BRM88_19180 PF03946 Ribosomal protein L11, N-terminal domain BRM88_19190 PF02357 Transcription termination factor nusG BRM88_19190 PF00467 KOW motif BRM88_19195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BRM88_19205 PF03144 Elongation factor Tu domain 2 BRM88_19205 PF03143 Elongation factor Tu C-terminal domain BRM88_19205 PF00009 Elongation factor Tu GTP binding domain BRM88_19225 PF01926 50S ribosome-binding GTPase BRM88_19225 PF06071 Protein of unknown function (DUF933) BRM88_19230 PF01195 Peptidyl-tRNA hydrolase BRM88_19235 PF01386 Ribosomal L25p family BRM88_19235 PF14693 Ribosomal protein TL5, C-terminal domain BRM88_19240 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BRM88_19240 PF14572 Phosphoribosyl synthetase-associated domain BRM88_19250 PF08544 GHMP kinases C terminal BRM88_19250 PF00288 GHMP kinases N terminal domain BRM88_19255 PF03550 Outer membrane lipoprotein LolB BRM88_19265 PF01488 Shikimate / quinate 5-dehydrogenase BRM88_19265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BRM88_19265 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BRM88_19270 PF03462 PCRF domain BRM88_19270 PF00472 RF-1 domain BRM88_19280 PF00994 Probable molybdopterin binding domain BRM88_19285 PF03976 Polyphosphate kinase 2 (PPK2) BRM88_19295 PF00708 Acylphosphatase BRM88_19300 PF08534 Redoxin BRM88_19305 PF03631 Virulence factor BrkB BRM88_19310 PF03358 NADPH-dependent FMN reductase BRM88_19325 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BRM88_19325 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain BRM88_19335 PF04073 Aminoacyl-tRNA editing domain BRM88_19345 PF01063 Amino-transferase class IV BRM88_19375 PF02233 NAD(P) transhydrogenase beta subunit BRM88_19380 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRM88_19400 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BRM88_19400 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRM88_19400 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BRM88_19415 PF01367 5'-3' exonuclease, C-terminal SAM fold BRM88_19415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRM88_19415 PF00476 DNA polymerase family A BRM88_19415 PF01612 3'-5' exonuclease BRM88_19420 PF00293 NUDIX domain BRM88_19430 PF00561 alpha/beta hydrolase fold BRM88_19465 PF05175 Methyltransferase small domain BRM88_19465 PF17827 PrmC N-terminal domain BRM88_19470 PF10417 C-terminal domain of 1-Cys peroxiredoxin BRM88_19470 PF00578 AhpC/TSA family BRM88_19475 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_19475 PF13192 Thioredoxin domain BRM88_19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_19480 PF03466 LysR substrate binding domain BRM88_19490 PF03449 Transcription elongation factor, N-terminal BRM88_19490 PF01272 Transcription elongation factor, GreA/GreB, C-term BRM88_19495 PF00923 Transaldolase/Fructose-6-phosphate aldolase BRM88_19530 PF01625 Peptide methionine sulfoxide reductase BRM88_19565 PF00462 Glutaredoxin BRM88_19570 PF13181 Tetratricopeptide repeat BRM88_19570 PF01435 Peptidase family M48 BRM88_19575 PF00072 Response regulator receiver domain BRM88_19575 PF00486 Transcriptional regulatory protein, C terminal BRM88_19580 PF11808 Phosphate regulon sensor protein PhoR BRM88_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_19580 PF00512 His Kinase A (phospho-acceptor) domain BRM88_19580 PF00989 PAS fold BRM88_19585 PF02503 Polyphosphate kinase middle domain BRM88_19585 PF17941 Polyphosphate kinase C-terminal domain 1 BRM88_19585 PF13090 Polyphosphate kinase C-terminal domain 2 BRM88_19585 PF13089 Polyphosphate kinase N-terminal domain BRM88_19590 PF02541 Ppx/GppA phosphatase family BRM88_19595 PF13439 Glycosyltransferase Family 4 BRM88_19595 PF00534 Glycosyl transferases group 1 BRM88_19600 PF01569 PAP2 superfamily BRM88_19605 PF00149 Calcineurin-like phosphoesterase BRM88_19625 PF04305 Protein of unknown function (DUF455) BRM88_19630 PF00156 Phosphoribosyl transferase domain BRM88_19645 PF08245 Mur ligase middle domain BRM88_19645 PF02875 Mur ligase family, glutamate ligase domain BRM88_19655 PF00300 Histidine phosphatase superfamily (branch 1) BRM88_19660 PF10459 Peptidase S46 BRM88_19680 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_19680 PF00107 Zinc-binding dehydrogenase BRM88_19690 PF00005 ABC transporter BRM88_19690 PF17850 CysA C-terminal regulatory domain BRM88_19690 PF12857 TOBE-like domain BRM88_19695 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_19700 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_19710 PF00155 Aminotransferase class I and II BRM88_19720 PF00849 RNA pseudouridylate synthase BRM88_19730 PF05736 OprF membrane domain BRM88_19730 PF00691 OmpA family BRM88_19740 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_19740 PF00107 Zinc-binding dehydrogenase BRM88_19745 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_19745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM88_19790 PF00072 Response regulator receiver domain BRM88_19790 PF17149 Periplasmic sensor domain found in signal transduction proteins BRM88_19790 PF00512 His Kinase A (phospho-acceptor) domain BRM88_19790 PF01627 Hpt domain BRM88_19790 PF00672 HAMP domain BRM88_19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_19795 PF00990 Diguanylate cyclase, GGDEF domain BRM88_19795 PF00072 Response regulator receiver domain BRM88_19815 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BRM88_19815 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRM88_19875 PF18125 RlmM ferredoxin-like domain BRM88_19875 PF01728 FtsJ-like methyltransferase BRM88_19880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRM88_19880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM88_19885 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM88_19905 PF00378 Enoyl-CoA hydratase/isomerase BRM88_19910 PF00171 Aldehyde dehydrogenase family BRM88_19915 PF00501 AMP-binding enzyme BRM88_19915 PF13193 AMP-binding enzyme C-terminal domain BRM88_19920 PF03466 LysR substrate binding domain BRM88_19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_19930 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRM88_19960 PF01494 FAD binding domain BRM88_19965 PF01494 FAD binding domain BRM88_19975 PF01923 Cobalamin adenosyltransferase BRM88_19980 PF00850 Histone deacetylase domain BRM88_19985 PF03968 OstA-like protein BRM88_19985 PF04453 LPS transport system D BRM88_19990 PF09312 SurA N-terminal domain BRM88_19990 PF00639 PPIC-type PPIASE domain BRM88_19995 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BRM88_20005 PF00398 Ribosomal RNA adenine dimethylase BRM88_20010 PF04379 ApaG domain BRM88_20015 PF00149 Calcineurin-like phosphoesterase BRM88_20020 PF00186 Dihydrofolate reductase BRM88_20030 PF00303 Thymidylate synthase BRM88_20035 PF01790 Prolipoprotein diacylglyceryl transferase BRM88_20055 PF01219 Prokaryotic diacylglycerol kinase BRM88_20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_20080 PF00512 His Kinase A (phospho-acceptor) domain BRM88_20080 PF08521 Two-component sensor kinase N-terminal BRM88_20090 PF13472 GDSL-like Lipase/Acylhydrolase family BRM88_20095 PF00005 ABC transporter BRM88_20105 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BRM88_20115 PF00005 ABC transporter BRM88_20155 PF00248 Aldo/keto reductase family BRM88_20165 PF07670 Nucleoside recognition BRM88_20165 PF01773 Na+ dependent nucleoside transporter N-terminus BRM88_20165 PF07662 Na+ dependent nucleoside transporter C-terminus BRM88_20170 PF00294 pfkB family carbohydrate kinase BRM88_20190 PF01207 Dihydrouridine synthase (Dus) BRM88_20205 PF02772 S-adenosylmethionine synthetase, central domain BRM88_20205 PF00438 S-adenosylmethionine synthetase, N-terminal domain BRM88_20205 PF02773 S-adenosylmethionine synthetase, C-terminal domain BRM88_20215 PF00328 Histidine phosphatase superfamily (branch 2) BRM88_20250 PF00311 Phosphoenolpyruvate carboxylase BRM88_20260 PF05221 S-adenosyl-L-homocysteine hydrolase BRM88_20260 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BRM88_20265 PF13649 Methyltransferase domain BRM88_20300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM88_20315 PF09286 Pro-kumamolisin, activation domain BRM88_20315 PF00082 Subtilase family BRM88_20320 PF16197 Ketoacyl-synthetase C-terminal extension BRM88_20320 PF00109 Beta-ketoacyl synthase, N-terminal domain BRM88_20320 PF00698 Acyl transferase domain BRM88_20320 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_20320 PF02801 Beta-ketoacyl synthase, C-terminal domain BRM88_20320 PF00107 Zinc-binding dehydrogenase BRM88_20320 PF08659 KR domain BRM88_20320 PF00550 Phosphopantetheine attachment site BRM88_20320 PF14765 Polyketide synthase dehydratase BRM88_20335 PF02219 Methylenetetrahydrofolate reductase BRM88_20350 PF00293 NUDIX domain BRM88_20360 PF02810 SEC-C motif BRM88_20360 PF01043 SecA preprotein cross-linking domain BRM88_20360 PF07517 SecA DEAD-like domain BRM88_20360 PF07516 SecA Wing and Scaffold domain BRM88_20365 PF01551 Peptidase family M23 BRM88_20365 PF01476 LysM domain BRM88_20375 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BRM88_20380 PF12327 FtsZ family, C-terminal domain BRM88_20380 PF00091 Tubulin/FtsZ family, GTPase domain BRM88_20385 PF02491 SHS2 domain inserted in FTSA BRM88_20390 PF08478 POTRA domain, FtsQ-type BRM88_20390 PF03799 Cell division protein FtsQ BRM88_20395 PF07478 D-ala D-ala ligase C-terminus BRM88_20395 PF01820 D-ala D-ala ligase N-terminus BRM88_20400 PF01225 Mur ligase family, catalytic domain BRM88_20400 PF08245 Mur ligase middle domain BRM88_20400 PF02875 Mur ligase family, glutamate ligase domain BRM88_20405 PF03033 Glycosyltransferase family 28 N-terminal domain BRM88_20405 PF04101 Glycosyltransferase family 28 C-terminal domain BRM88_20410 PF01098 Cell cycle protein BRM88_20415 PF00953 Glycosyl transferase family 4 BRM88_20420 PF01225 Mur ligase family, catalytic domain BRM88_20420 PF02875 Mur ligase family, glutamate ligase domain BRM88_20420 PF08245 Mur ligase middle domain BRM88_20425 PF02875 Mur ligase family, glutamate ligase domain BRM88_20425 PF01225 Mur ligase family, catalytic domain BRM88_20425 PF08245 Mur ligase middle domain BRM88_20430 PF03717 Penicillin-binding Protein dimerisation domain BRM88_20430 PF00905 Penicillin binding protein transpeptidase domain BRM88_20435 PF04999 Cell division protein FtsL BRM88_20440 PF01795 MraW methylase family BRM88_20445 PF02381 MraZ protein, putative antitoxin-like BRM88_20465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRM88_20475 PF02021 Uncharacterised protein family UPF0102 BRM88_20480 PF04307 LexA-binding, inner membrane-associated putative hydrolase BRM88_20485 PF01565 FAD binding domain BRM88_20485 PF02913 FAD linked oxidases, C-terminal domain BRM88_20490 PF00072 Response regulator receiver domain BRM88_20490 PF00486 Transcriptional regulatory protein, C terminal BRM88_20495 PF02702 Osmosensitive K+ channel His kinase sensor domain BRM88_20495 PF13493 Domain of unknown function (DUF4118) BRM88_20495 PF13492 GAF domain BRM88_20495 PF00512 His Kinase A (phospho-acceptor) domain BRM88_20495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_20500 PF02669 K+-transporting ATPase, c chain BRM88_20510 PF03814 Potassium-transporting ATPase A subunit BRM88_20535 PF02769 AIR synthase related protein, C-terminal domain BRM88_20535 PF00586 AIR synthase related protein, N-terminal domain BRM88_20540 PF01029 NusB family BRM88_20545 PF00885 6,7-dimethyl-8-ribityllumazine synthase BRM88_20550 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BRM88_20550 PF00925 GTP cyclohydrolase II BRM88_20555 PF00677 Lumazine binding domain BRM88_20565 PF01872 RibD C-terminal domain BRM88_20565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BRM88_20575 PF03477 ATP cone domain BRM88_20585 PF00464 Serine hydroxymethyltransferase BRM88_20605 PF00005 ABC transporter BRM88_20605 PF12848 ABC transporter BRM88_20625 PF00756 Putative esterase BRM88_20635 PF00107 Zinc-binding dehydrogenase BRM88_20635 PF08240 Alcohol dehydrogenase GroES-like domain BRM88_20640 PF02583 Metal-sensitive transcriptional repressor BRM88_20650 PF00072 Response regulator receiver domain BRM88_20650 PF00486 Transcriptional regulatory protein, C terminal BRM88_20655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_20655 PF00512 His Kinase A (phospho-acceptor) domain BRM88_20655 PF00672 HAMP domain BRM88_20655 PF16527 Two-component sensor protein CpxA, periplasmic domain BRM88_20695 PF00512 His Kinase A (phospho-acceptor) domain BRM88_20695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_20695 PF00672 HAMP domain BRM88_20700 PF04107 Glutamate-cysteine ligase family 2(GCS2) BRM88_20715 PF01926 50S ribosome-binding GTPase BRM88_20720 PF00034 Cytochrome c BRM88_20750 PF01609 Transposase DDE domain BRM88_20750 PF05598 Transposase domain (DUF772) BRM88_20755 PF13291 ACT domain BRM88_20755 PF00291 Pyridoxal-phosphate dependent enzyme BRM88_20770 PF05598 Transposase domain (DUF772) BRM88_20770 PF01609 Transposase DDE domain BRM88_20780 PF01609 Transposase DDE domain BRM88_20780 PF05598 Transposase domain (DUF772) BRM88_20790 PF01527 Transposase BRM88_20820 PF12627 Probable RNA and SrmB- binding site of polymerase A BRM88_20820 PF01743 Poly A polymerase head domain BRM88_20820 PF01966 HD domain BRM88_20835 PF01609 Transposase DDE domain BRM88_20835 PF05598 Transposase domain (DUF772) BRM88_20885 PF14883 Hypothetical glycosyl hydrolase family 13 BRM88_20885 PF01522 Polysaccharide deacetylase BRM88_20890 PF00535 Glycosyl transferase family 2 BRM88_20900 PF01979 Amidohydrolase family BRM88_20905 PF01380 SIS domain BRM88_20910 PF00356 Bacterial regulatory proteins, lacI family BRM88_20915 PF07690 Major Facilitator Superfamily BRM88_20935 PF02837 Glycosyl hydrolases family 2, sugar binding domain BRM88_20935 PF16355 Domain of unknown function (DUF4982) BRM88_20935 PF00703 Glycosyl hydrolases family 2 BRM88_20935 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BRM88_20935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BRM88_20990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRM88_20995 PF00512 His Kinase A (phospho-acceptor) domain BRM88_20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_21000 PF00072 Response regulator receiver domain BRM88_21005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_21005 PF08446 PAS fold BRM88_21005 PF00512 His Kinase A (phospho-acceptor) domain BRM88_21005 PF01590 GAF domain BRM88_21005 PF00360 Phytochrome region BRM88_21010 PF04972 BON domain BRM88_21015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRM88_21015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRM88_21020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM88_21020 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BRM88_21055 PF00293 NUDIX domain BRM88_21055 PF01467 Cytidylyltransferase-like BRM88_21065 PF00595 PDZ domain BRM88_21065 PF11818 C-terminal domain of tail specific protease (DUF3340) BRM88_21065 PF03572 Peptidase family S41 BRM88_21065 PF17804 Tail specific protease N-terminal domain BRM88_21075 PF07669 Eco57I restriction-modification methylase BRM88_21075 PF12950 TaqI-like C-terminal specificity domain BRM88_21080 PF04055 Radical SAM superfamily BRM88_21080 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BRM88_21085 PF03099 Biotin/lipoate A/B protein ligase family BRM88_21090 PF04359 Protein of unknown function (DUF493) BRM88_21105 PF00768 D-alanyl-D-alanine carboxypeptidase BRM88_21105 PF07943 Penicillin-binding protein 5, C-terminal domain BRM88_21115 PF03330 Lytic transglycolase BRM88_21115 PF05036 Sporulation related domain BRM88_21120 PF13406 Transglycosylase SLT domain BRM88_21135 PF01476 LysM domain BRM88_21135 PF01471 Putative peptidoglycan binding domain BRM88_21135 PF01510 N-acetylmuramoyl-L-alanine amidase BRM88_21180 PF01098 Cell cycle protein BRM88_21185 PF03717 Penicillin-binding Protein dimerisation domain BRM88_21185 PF00905 Penicillin binding protein transpeptidase domain BRM88_21195 PF04085 rod shape-determining protein MreC BRM88_21205 PF00294 pfkB family carbohydrate kinase BRM88_21225 PF13673 Acetyltransferase (GNAT) domain BRM88_21235 PF13533 Biotin-lipoyl like BRM88_21245 PF01209 ubiE/COQ5 methyltransferase family BRM88_21250 PF17152 Periplasmic sensor domain BRM88_21250 PF00990 Diguanylate cyclase, GGDEF domain BRM88_21255 PF01433 Peptidase family M1 domain BRM88_21255 PF11838 ERAP1-like C-terminal domain BRM88_21270 PF00004 ATPase family associated with various cellular activities (AAA) BRM88_21270 PF07724 AAA domain (Cdc48 subfamily) BRM88_21270 PF10431 C-terminal, D2-small domain, of ClpB protein BRM88_21275 PF00227 Proteasome subunit BRM88_21285 PF00589 Phage integrase family BRM88_21285 PF02899 Phage integrase, N-terminal SAM-like domain BRM88_21295 PF01678 Diaminopimelate epimerase BRM88_21310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRM88_21310 PF00326 Prolyl oligopeptidase family BRM88_21315 PF00155 Aminotransferase class I and II BRM88_21330 PF00326 Prolyl oligopeptidase family BRM88_21330 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRM88_21355 PF03900 Porphobilinogen deaminase, C-terminal domain BRM88_21355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BRM88_21360 PF04397 LytTr DNA-binding domain BRM88_21360 PF00072 Response regulator receiver domain BRM88_21365 PF06580 Histidine kinase BRM88_21365 PF07694 5TMR of 5TMR-LYT BRM88_21375 PF13632 Glycosyl transferase family group 2 BRM88_21410 PF00916 Sulfate permease family BRM88_21410 PF01740 STAS domain BRM88_21415 PF00150 Cellulase (glycosyl hydrolase family 5) BRM88_21415 PF00553 Cellulose binding domain BRM88_21430 PF00990 Diguanylate cyclase, GGDEF domain BRM88_21430 PF03707 Bacterial signalling protein N terminal repeat BRM88_21430 PF00563 EAL domain BRM88_21470 PF01204 Trehalase BRM88_21490 PF01544 CorA-like Mg2+ transporter protein BRM88_21500 PF00324 Amino acid permease BRM88_21510 PF00041 Fibronectin type III domain BRM88_21510 PF01341 Glycosyl hydrolases family 6 BRM88_21510 PF00553 Cellulose binding domain BRM88_21515 PF03330 Lytic transglycolase BRM88_21520 PF00892 EamA-like transporter family BRM88_21540 PF07759 Protein of unknown function (DUF1615) BRM88_21580 PF00106 short chain dehydrogenase BRM88_21600 PF04715 Anthranilate synthase component I, N terminal region BRM88_21600 PF00425 chorismate binding enzyme BRM88_21605 PF00781 Diacylglycerol kinase catalytic domain BRM88_21610 PF00583 Acetyltransferase (GNAT) family BRM88_21615 PF00834 Ribulose-phosphate 3 epimerase family BRM88_21620 PF00226 DnaJ domain BRM88_21620 PF05099 Tellurite resistance protein TerB BRM88_21625 PF01259 SAICAR synthetase BRM88_21675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRM88_21675 PF13244 Domain of unknown function (DUF4040) BRM88_21675 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BRM88_21675 PF00361 Proton-conducting membrane transporter BRM88_21680 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRM88_21685 PF00361 Proton-conducting membrane transporter BRM88_21695 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BRM88_21700 PF03334 Na+/H+ antiporter subunit BRM88_21710 PF04209 homogentisate 1,2-dioxygenase BRM88_21715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRM88_21720 PF01047 MarR family BRM88_21730 PF00854 POT family BRM88_21735 PF03301 Tryptophan 2,3-dioxygenase BRM88_21745 PF00676 Dehydrogenase E1 component BRM88_21780 PF00108 Thiolase, N-terminal domain BRM88_21780 PF02803 Thiolase, C-terminal domain BRM88_21835 PF05598 Transposase domain (DUF772) BRM88_21835 PF01609 Transposase DDE domain BRM88_21865 PF01427 D-ala-D-ala dipeptidase BRM88_21870 PF01510 N-acetylmuramoyl-L-alanine amidase BRM88_21880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_21880 PF13378 Enolase C-terminal domain-like BRM88_21920 PF13520 Amino acid permease BRM88_21960 PF05360 yiaA/B two helix domain BRM88_21965 PF07995 Glucose / Sorbosone dehydrogenase BRM88_22000 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_22000 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_22000 PF14310 Fibronectin type III-like domain BRM88_22005 PF02152 Dihydroneopterin aldolase BRM88_22010 PF00814 Glycoprotease family BRM88_22015 PF01165 Ribosomal protein S21 BRM88_22020 PF09424 Yqey-like protein BRM88_22035 PF03631 Virulence factor BrkB BRM88_22040 PF10410 DnaB-helicase binding domain of primase BRM88_22040 PF01807 CHC2 zinc finger BRM88_22040 PF08275 DNA primase catalytic core, N-terminal domain BRM88_22040 PF08278 DNA primase DnaG DnaB-binding BRM88_22060 PF13593 SBF-like CPA transporter family (DUF4137) BRM88_22075 PF01040 UbiA prenyltransferase family BRM88_22100 PF00510 Cytochrome c oxidase subunit III BRM88_22105 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BRM88_22115 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRM88_22120 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BRM88_22120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRM88_22130 PF01619 Proline dehydrogenase BRM88_22130 PF14850 DNA-binding domain of Proline dehydrogenase BRM88_22130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRM88_22130 PF00171 Aldehyde dehydrogenase family BRM88_22145 PF00210 Ferritin-like domain BRM88_22155 PF00293 NUDIX domain BRM88_22170 PF00380 Ribosomal protein S9/S16 BRM88_22175 PF00572 Ribosomal protein L13 BRM88_22180 PF03232 Ubiquinone biosynthesis protein COQ7 BRM88_22185 PF00893 Small Multidrug Resistance protein BRM88_22190 PF02675 S-adenosylmethionine decarboxylase BRM88_22195 PF00325 Bacterial regulatory proteins, crp family BRM88_22195 PF00027 Cyclic nucleotide-binding domain BRM88_22205 PF00218 Indole-3-glycerol phosphate synthase BRM88_22210 PF00591 Glycosyl transferase family, a/b domain BRM88_22210 PF02885 Glycosyl transferase family, helical bundle domain BRM88_22225 PF00117 Glutamine amidotransferase class-I BRM88_22250 PF03971 Monomeric isocitrate dehydrogenase BRM88_22260 PF05598 Transposase domain (DUF772) BRM88_22290 PF05598 Transposase domain (DUF772) BRM88_22290 PF01609 Transposase DDE domain BRM88_22305 PF00872 Transposase, Mutator family BRM88_22320 PF14489 QueF-like protein BRM88_22320 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BRM88_22330 PF07687 Peptidase dimerisation domain BRM88_22330 PF01546 Peptidase family M20/M25/M40 BRM88_22335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRM88_22340 PF00873 AcrB/AcrD/AcrF family BRM88_22345 PF00873 AcrB/AcrD/AcrF family BRM88_22355 PF07063 Domain of unknown function (DUF1338) BRM88_22395 PF00581 Rhodanese-like domain BRM88_22400 PF02556 Preprotein translocase subunit SecB BRM88_22405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BRM88_22405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BRM88_22415 PF00205 Thiamine pyrophosphate enzyme, central domain BRM88_22415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRM88_22415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRM88_22420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_22420 PF00512 His Kinase A (phospho-acceptor) domain BRM88_22425 PF02954 Bacterial regulatory protein, Fis family BRM88_22425 PF00158 Sigma-54 interaction domain BRM88_22425 PF00072 Response regulator receiver domain BRM88_22440 PF07690 Major Facilitator Superfamily BRM88_22445 PF00588 SpoU rRNA Methylase family BRM88_22460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRM88_22460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRM88_22465 PF13784 Fic/DOC family N-terminal BRM88_22465 PF02661 Fic/DOC family BRM88_22470 PF01555 DNA methylase BRM88_22480 PF00561 alpha/beta hydrolase fold BRM88_22485 PF03692 Putative zinc- or iron-chelating domain BRM88_22490 PF00501 AMP-binding enzyme BRM88_22495 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BRM88_22505 PF05598 Transposase domain (DUF772) BRM88_22520 PF11871 Domain of unknown function (DUF3391) BRM88_22520 PF01966 HD domain BRM88_22525 PF07690 Major Facilitator Superfamily BRM88_22550 PF00132 Bacterial transferase hexapeptide (six repeats) BRM88_22555 PF03692 Putative zinc- or iron-chelating domain BRM88_22560 PF00920 Dehydratase family BRM88_22565 PF00589 Phage integrase family BRM88_22565 PF13495 Phage integrase, N-terminal SAM-like domain BRM88_22585 PF05598 Transposase domain (DUF772) BRM88_22585 PF01609 Transposase DDE domain BRM88_22595 PF01218 Coproporphyrinogen III oxidase BRM88_22610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRM88_22610 PF01367 5'-3' exonuclease, C-terminal SAM fold BRM88_22610 PF00476 DNA polymerase family A BRM88_22610 PF01612 3'-5' exonuclease BRM88_22630 PF00456 Transketolase, thiamine diphosphate binding domain BRM88_22630 PF17831 Pyruvate dehydrogenase E1 component middle domain BRM88_22645 PF03377 TAL effector repeat BRM88_22660 PF13333 Integrase core domain BRM88_22660 PF13276 HTH-like domain BRM88_22660 PF00665 Integrase core domain BRM88_22665 PF01527 Transposase BRM88_22695 PF04264 YceI-like domain BRM88_22700 PF00881 Nitroreductase family BRM88_22725 PF02592 Putative vitamin uptake transporter BRM88_22730 PF03710 Glutamate-ammonia ligase adenylyltransferase BRM88_22730 PF08335 GlnD PII-uridylyltransferase BRM88_22740 PF08450 SMP-30/Gluconolactonase/LRE-like region BRM88_22780 PF00793 DAHP synthetase I family BRM88_22795 PF00593 TonB dependent receptor BRM88_22795 PF07715 TonB-dependent Receptor Plug Domain BRM88_22805 PF00118 TCP-1/cpn60 chaperonin family BRM88_22810 PF00166 Chaperonin 10 Kd subunit BRM88_22830 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRM88_22840 PF04545 Sigma-70, region 4 BRM88_22840 PF04542 Sigma-70 region 2 BRM88_22845 PF03167 Uracil DNA glycosylase superfamily BRM88_22850 PF00072 Response regulator receiver domain BRM88_22855 PF18075 FtsX extracellular domain BRM88_22860 PF00005 ABC transporter BRM88_22865 PF00270 DEAD/DEAH box helicase BRM88_22865 PF00271 Helicase conserved C-terminal domain BRM88_22865 PF12300 ATP-dependent RNA helicase RhlB BRM88_22870 PF00085 Thioredoxin BRM88_22875 PF07498 Rho termination factor, N-terminal domain BRM88_22875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRM88_22875 PF07497 Rho termination factor, RNA-binding domain BRM88_22890 PF17243 POTRA domain TamA domain 1 BRM88_22890 PF01103 Surface antigen BRM88_22895 PF04357 TamB, inner membrane protein subunit of TAM complex BRM88_22930 PF07977 FabA-like domain BRM88_22935 PF01553 Acyltransferase BRM88_22945 PF00550 Phosphopantetheine attachment site BRM88_22950 PF04820 Tryptophan halogenase BRM88_23005 PF01638 HxlR-like helix-turn-helix BRM88_23010 PF05368 NmrA-like family BRM88_23025 PF03812 2-keto-3-deoxygluconate permease BRM88_23030 PF01717 Cobalamin-independent synthase, Catalytic domain BRM88_23030 PF08267 Cobalamin-independent synthase, N-terminal domain BRM88_23040 PF03358 NADPH-dependent FMN reductase BRM88_23045 PF03466 LysR substrate binding domain BRM88_23045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_23050 PF02677 Epoxyqueuosine reductase QueH BRM88_23070 PF00072 Response regulator receiver domain BRM88_23070 PF00486 Transcriptional regulatory protein, C terminal BRM88_23075 PF00551 Formyl transferase BRM88_23095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRM88_23095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRM88_23100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRM88_23105 PF02146 Sir2 family BRM88_23115 PF07690 Major Facilitator Superfamily BRM88_23120 PF03466 LysR substrate binding domain BRM88_23120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_23140 PF01026 TatD related DNase BRM88_23190 PF00266 Aminotransferase class-V BRM88_23205 PF01014 Uricase BRM88_23205 PF09349 OHCU decarboxylase BRM88_23255 PF00326 Prolyl oligopeptidase family BRM88_23260 PF00289 Biotin carboxylase, N-terminal domain BRM88_23260 PF02785 Biotin carboxylase C-terminal domain BRM88_23260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRM88_23260 PF00364 Biotin-requiring enzyme BRM88_23265 PF01039 Carboxyl transferase domain BRM88_23270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRM88_23270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRM88_23270 PF02770 Acyl-CoA dehydrogenase, middle domain BRM88_23325 PF07683 Cobalamin synthesis protein cobW C-terminal domain BRM88_23325 PF02492 CobW/HypB/UreG, nucleotide-binding domain BRM88_23345 PF03969 AFG1-like ATPase BRM88_23360 PF07715 TonB-dependent Receptor Plug Domain BRM88_23360 PF00593 TonB dependent receptor BRM88_23365 PF13181 Tetratricopeptide repeat BRM88_23370 PF02092 Glycyl-tRNA synthetase beta subunit BRM88_23370 PF05746 DALR anticodon binding domain BRM88_23375 PF02091 Glycyl-tRNA synthetase alpha subunit BRM88_23380 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRM88_23380 PF00437 Type II/IV secretion system protein BRM88_23405 PF00117 Glutamine amidotransferase class-I BRM88_23405 PF00958 GMP synthase C terminal domain BRM88_23415 PF00902 Sec-independent protein translocase protein (TatC) BRM88_23420 PF02416 mttA/Hcf106 family BRM88_23425 PF02416 mttA/Hcf106 family BRM88_23435 PF00762 Ferrochelatase BRM88_23440 PF12697 Alpha/beta hydrolase family BRM88_23465 PF04381 Putative exonuclease, RdgC BRM88_23470 PF01171 PP-loop family BRM88_23485 PF00356 Bacterial regulatory proteins, lacI family BRM88_23490 PF07488 Glycosyl hydrolase family 67 middle domain BRM88_23490 PF07477 Glycosyl hydrolase family 67 C-terminus BRM88_23490 PF03648 Glycosyl hydrolase family 67 N-terminus BRM88_23500 PF13378 Enolase C-terminal domain-like BRM88_23500 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_23505 PF04616 Glycosyl hydrolases family 43 BRM88_23505 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRM88_23510 PF00933 Glycosyl hydrolase family 3 N terminal domain BRM88_23510 PF07691 PA14 domain BRM88_23510 PF14310 Fibronectin type III-like domain BRM88_23510 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRM88_23515 PF01232 Mannitol dehydrogenase Rossmann domain BRM88_23515 PF08125 Mannitol dehydrogenase C-terminal domain BRM88_23535 PF02614 Glucuronate isomerase BRM88_23540 PF00553 Cellulose binding domain BRM88_23540 PF03422 Carbohydrate binding module (family 6) BRM88_23540 PF00331 Glycosyl hydrolase family 10 BRM88_23570 PF04616 Glycosyl hydrolases family 43 BRM88_23610 PF12792 CSS motif domain associated with EAL BRM88_23610 PF00563 EAL domain BRM88_23615 PF00487 Fatty acid desaturase BRM88_23620 PF00111 2Fe-2S iron-sulfur cluster binding domain BRM88_23620 PF00175 Oxidoreductase NAD-binding domain BRM88_23620 PF00970 Oxidoreductase FAD-binding domain BRM88_23625 PF00440 Bacterial regulatory proteins, tetR family BRM88_23660 PF01047 MarR family BRM88_23665 PF02566 OsmC-like protein BRM88_23760 PF01381 Helix-turn-helix BRM88_23765 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BRM88_23770 PF13538 UvrD-like helicase C-terminal domain BRM88_23775 PF12705 PD-(D/E)XK nuclease superfamily BRM88_23775 PF00580 UvrD/REP helicase N-terminal domain BRM88_23775 PF13361 UvrD-like helicase C-terminal domain BRM88_23780 PF17946 RecC C-terminal domain BRM88_23820 PF00080 Copper/zinc superoxide dismutase (SODC) BRM88_23825 PF00080 Copper/zinc superoxide dismutase (SODC) BRM88_23830 PF00072 Response regulator receiver domain BRM88_23830 PF02954 Bacterial regulatory protein, Fis family BRM88_23830 PF00158 Sigma-54 interaction domain BRM88_23835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRM88_23835 PF00512 His Kinase A (phospho-acceptor) domain BRM88_23835 PF00989 PAS fold BRM88_23840 PF00909 Ammonium Transporter Family BRM88_23845 PF00543 Nitrogen regulatory protein P-II BRM88_23850 PF00120 Glutamine synthetase, catalytic domain BRM88_23850 PF03951 Glutamine synthetase, beta-Grasp domain BRM88_23855 PF02673 Bacitracin resistance protein BacA BRM88_23895 PF03061 Thioesterase superfamily BRM88_23900 PF13091 PLD-like domain BRM88_23915 PF01883 Iron-sulfur cluster assembly protein BRM88_23915 PF10609 NUBPL iron-transfer P-loop NTPase BRM88_23935 PF01381 Helix-turn-helix BRM88_23940 PF07804 HipA-like C-terminal domain BRM88_23940 PF13657 HipA N-terminal domain BRM88_23945 PF10017 Histidine-specific methyltransferase, SAM-dependent BRM88_23950 PF12867 DinB superfamily BRM88_23950 PF03781 Sulfatase-modifying factor enzyme 1 BRM88_23960 PF00528 Binding-protein-dependent transport system inner membrane component BRM88_23965 PF00005 ABC transporter BRM88_23965 PF00571 CBS domain BRM88_23980 PF00005 ABC transporter BRM88_23990 PF01734 Patatin-like phospholipase BRM88_24005 PF01609 Transposase DDE domain BRM88_24005 PF05598 Transposase domain (DUF772) BRM88_24030 PF00248 Aldo/keto reductase family BRM88_24035 PF16884 N-terminal domain of oxidoreductase BRM88_24035 PF00107 Zinc-binding dehydrogenase BRM88_24040 PF00248 Aldo/keto reductase family BRM88_24050 PF00849 RNA pseudouridylate synthase BRM88_24065 PF00270 DEAD/DEAH box helicase BRM88_24065 PF04408 Helicase associated domain (HA2) BRM88_24065 PF00271 Helicase conserved C-terminal domain BRM88_24065 PF08482 ATP-dependent helicase C-terminal BRM88_24070 PF07308 Protein of unknown function (DUF1456) BRM88_24075 PF13378 Enolase C-terminal domain-like BRM88_24075 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRM88_24085 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRM88_24100 PF00248 Aldo/keto reductase family BRM88_24110 PF04616 Glycosyl hydrolases family 43 BRM88_24110 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRM88_24135 PF00072 Response regulator receiver domain BRM88_24135 PF00196 Bacterial regulatory proteins, luxR family BRM88_24140 PF00501 AMP-binding enzyme BRM88_24140 PF13193 AMP-binding enzyme C-terminal domain BRM88_24140 PF16177 Acetyl-coenzyme A synthetase N-terminus BRM88_24155 PF04341 Protein of unknown function, DUF485 BRM88_24160 PF00474 Sodium:solute symporter family BRM88_24175 PF03372 Endonuclease/Exonuclease/phosphatase family BRM88_24185 PF04226 Transglycosylase associated protein BRM88_24190 PF01648 4'-phosphopantetheinyl transferase superfamily BRM88_24195 PF16655 PhoD-like phosphatase, N-terminal domain BRM88_24195 PF09423 PhoD-like phosphatase BRM88_24200 PF09423 PhoD-like phosphatase BRM88_24200 PF16655 PhoD-like phosphatase, N-terminal domain BRM88_24205 PF02527 rRNA small subunit methyltransferase G BRM88_24220 PF00830 Ribosomal L28 family BRM88_24225 PF00471 Ribosomal protein L33 BRM88_24230 PF04909 Amidohydrolase BRM88_24250 PF04303 PrpF protein BRM88_24255 PF03737 Aldolase/RraA BRM88_24260 PF03466 LysR substrate binding domain BRM88_24260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRM88_24265 PF13396 Phospholipase_D-nuclease N-terminal BRM88_24265 PF13091 PLD-like domain BRM88_24285 PF00580 UvrD/REP helicase N-terminal domain BRM88_24285 PF13361 UvrD-like helicase C-terminal domain BRM88_24300 PF13520 Amino acid permease BRM88_24310 PF02646 RmuC family BRM88_24320 PF00255 Glutathione peroxidase BRM88_24340 PF04055 Radical SAM superfamily BRM88_24350 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BRM88_24365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRM88_24365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRM88_24375 PF03572 Peptidase family S41 BRM88_24375 PF13180 PDZ domain BRM88_24380 PF01551 Peptidase family M23 BRM88_24390 PF04389 Peptidase family M28 BRM88_24440 PF02463 RecF/RecN/SMC N terminal domain BRM88_24445 PF01227 GTP cyclohydrolase I BRM88_24470 PF00083 Sugar (and other) transporter BRM88_24480 PF13091 PLD-like domain BRM88_24480 PF13396 Phospholipase_D-nuclease N-terminal BRM88_24510 PF05598 Transposase domain (DUF772) BRM88_24575 PF02595 Glycerate kinase family BRM88_24580 PF07690 Major Facilitator Superfamily BRM88_24595 PF10672 S-adenosylmethionine-dependent methyltransferase BRM88_24595 PF17785 PUA-like domain BRM88_24605 PF03741 Integral membrane protein TerC family BRM88_24610 PF01694 Rhomboid family BRM88_24615 PF03009 Glycerophosphoryl diester phosphodiesterase family BRM88_24625 PF01569 PAP2 superfamily BRM88_24630 PF12631 MnmE helical domain BRM88_24630 PF01926 50S ribosome-binding GTPase BRM88_24630 PF10396 GTP-binding protein TrmE N-terminus BRM88_24635 PF01522 Polysaccharide deacetylase BRM88_24640 PF14849 YidC periplasmic domain BRM88_24640 PF02096 60Kd inner membrane protein BRM88_24645 PF00825 Ribonuclease P BRM88_24650 PF00468 Ribosomal protein L34