BRM88_00010 SM00480 DNA polymerase III beta subunit BRM88_00025 SM00387 Histidine kinase-like ATPases BRM88_00025 SM00433 TopoisomeraseII BRM88_00040 SM00028 Tetratricopeptide repeats BRM88_00075 SM00155 Phospholipase D. Active site motifs. BRM88_00160 SM00382 ATPases associated with a variety of cellular activities BRM88_00220 SM00487 DEAD-like helicases superfamily BRM88_00220 SM00490 helicase superfamily c-terminal domain BRM88_00305 SM01126 BRM88_00305 BRM88_00340 SM00642 Alpha-amylase domain BRM88_00350 SM00642 Alpha-amylase domain BRM88_00360 SM00642 Alpha-amylase domain BRM88_00365 SM00642 Alpha-amylase domain BRM88_00375 SM00267 diguanylate cyclase BRM88_00460 SM00382 ATPases associated with a variety of cellular activities BRM88_00590 SM00369 Leucine-rich repeats, typical (most populated) subfamily BRM88_00615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_00735 SM00382 ATPases associated with a variety of cellular activities BRM88_00785 SM00487 DEAD-like helicases superfamily BRM88_00785 SM00490 helicase superfamily c-terminal domain BRM88_00865 SM01126 BRM88_00865 BRM88_00900 SM00354 helix_turn _helix lactose operon repressor BRM88_00930 SM00642 Alpha-amylase domain BRM88_00935 SM00642 Alpha-amylase domain BRM88_00940 SM00642 Alpha-amylase domain BRM88_00995 SM00382 ATPases associated with a variety of cellular activities BRM88_01005 SM00938 Nitrogen regulatory protein P-II BRM88_01100 SM01228 BRM88_01100 BRM88_01170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_01170 SM00388 His Kinase A (phosphoacceptor) domain BRM88_01205 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BRM88_01225 SM00354 helix_turn _helix lactose operon repressor BRM88_01240 SM00563 Phosphate acyltransferases BRM88_01290 SM00344 helix_turn_helix ASNC type BRM88_01340 SM00829 Enoylreductase BRM88_01415 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_01415 SM00091 PAS domain BRM88_01465 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BRM88_01465 SM01232 BRM88_01465 BRM88_01475 SM01126 BRM88_01475 BRM88_01515 SM00382 ATPases associated with a variety of cellular activities BRM88_01530 SM01126 BRM88_01530 BRM88_01590 SM00564 beta-propeller repeat BRM88_01630 SM00091 PAS domain BRM88_01630 SM00387 Histidine kinase-like ATPases BRM88_01630 SM00388 His Kinase A (phosphoacceptor) domain BRM88_01630 SM00448 cheY-homologous receiver domain BRM88_01640 SM00346 helix_turn_helix isocitrate lyase regulation BRM88_01665 SM01126 BRM88_01665 BRM88_01695 SM00563 Phosphate acyltransferases BRM88_01790 SM01126 BRM88_01790 BRM88_01835 SM00382 ATPases associated with a variety of cellular activities BRM88_01860 SM00530 Helix-turn-helix XRE-family like proteins BRM88_01870 SM00382 ATPases associated with a variety of cellular activities BRM88_01890 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BRM88_01945 SM01004 Delta-aminolevulinic acid dehydratase BRM88_01965 SM00477 DNA/RNA non-specific endonuclease BRM88_01965 SM00892 DNA/RNA non-specific endonuclease BRM88_01995 SM00491 BRM88_01995 BRM88_02005 SM01126 BRM88_02005 BRM88_02020 SM01060 BRM88_02020 BRM88_02025 SM00248 ankyrin repeats BRM88_02055 SM00448 cheY-homologous receiver domain BRM88_02055 SM00862 Transcriptional regulatory protein, C terminal BRM88_02060 SM00387 Histidine kinase-like ATPases BRM88_02060 SM00388 His Kinase A (phosphoacceptor) domain BRM88_02155 SM00849 Metallo-beta-lactamase superfamily BRM88_02205 SM01060 BRM88_02205 BRM88_02255 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_02255 SM00876 Biotin and Thiamin Synthesis associated domain BRM88_02275 SM00822 BRM88_02275 BRM88_02300 SM00825 Beta-ketoacyl synthase BRM88_02310 SM00248 ankyrin repeats BRM88_02315 SM00226 Low molecular weight phosphatase family BRM88_02350 SM00116 Domain in cystathionine beta-synthase and other proteins. BRM88_02350 SM00924 MgtE intracellular N domain BRM88_02360 SM00881 CoA binding domain BRM88_02430 SM00998 Adenylosuccinate lyase C-terminus BRM88_02455 SM00090 RIO-like kinase BRM88_02480 SM00836 DALR anticodon binding domain BRM88_02480 SM01016 Arginyl tRNA synthetase N terminal dom BRM88_02510 SM01259 BRM88_02510 BRM88_02530 SM00470 ParB-like nuclease domain BRM88_02615 SM00073 Histidine Phosphotransfer domain BRM88_02615 SM00387 Histidine kinase-like ATPases BRM88_02615 SM00388 His Kinase A (phosphoacceptor) domain BRM88_02615 SM00448 cheY-homologous receiver domain BRM88_02620 SM00052 Putative diguanylate phosphodiesterase BRM88_02620 SM00267 diguanylate cyclase BRM88_02620 SM00448 cheY-homologous receiver domain BRM88_02685 SM00563 Phosphate acyltransferases BRM88_02715 SM01209 BRM88_02715 BRM88_02715 SM01210 BRM88_02715 BRM88_02730 SM00798 AICARFT/IMPCHase bienzyme BRM88_02730 SM00851 MGS-like domain BRM88_02785 SM00530 Helix-turn-helix XRE-family like proteins BRM88_02830 SM00878 Biotin carboxylase C-terminal domain BRM88_02870 SM01126 BRM88_02870 BRM88_02900 SM00487 DEAD-like helicases superfamily BRM88_02900 SM00490 helicase superfamily c-terminal domain BRM88_02960 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BRM88_02960 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BRM88_02960 SM00493 BRM88_02960 BRM88_02985 SM00257 Lysin motif BRM88_03130 SM01126 BRM88_03130 BRM88_03145 SM00382 ATPases associated with a variety of cellular activities BRM88_03235 SM00382 ATPases associated with a variety of cellular activities BRM88_03235 SM00448 cheY-homologous receiver domain BRM88_03245 SM00448 cheY-homologous receiver domain BRM88_03265 SM00387 Histidine kinase-like ATPases BRM88_03335 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_03340 SM00986 Uracil DNA glycosylase superfamily BRM88_03340 SM00987 UreE urease accessory protein, C-terminal domain BRM88_03350 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BRM88_03370 SM00382 ATPases associated with a variety of cellular activities BRM88_03400 SM00387 Histidine kinase-like ATPases BRM88_03400 SM00388 His Kinase A (phosphoacceptor) domain BRM88_03405 SM00448 cheY-homologous receiver domain BRM88_03405 SM00862 Transcriptional regulatory protein, C terminal BRM88_03450 SM00344 helix_turn_helix ASNC type BRM88_03460 SM01005 Alanine racemase, C-terminal domain BRM88_03480 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_03480 SM00091 PAS domain BRM88_03480 SM00387 Histidine kinase-like ATPases BRM88_03480 SM00388 His Kinase A (phosphoacceptor) domain BRM88_03480 SM00448 cheY-homologous receiver domain BRM88_03565 SM00382 ATPases associated with a variety of cellular activities BRM88_03565 SM00930 BRM88_03565 BRM88_03590 SM00986 Uracil DNA glycosylase superfamily BRM88_03590 SM00987 UreE urease accessory protein, C-terminal domain BRM88_03660 SM00382 ATPases associated with a variety of cellular activities BRM88_03670 SM00830 Chorismate mutase type II BRM88_03700 SM01126 BRM88_03700 BRM88_03790 SM00825 Beta-ketoacyl synthase BRM88_03820 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_03845 SM00487 DEAD-like helicases superfamily BRM88_03845 SM00490 helicase superfamily c-terminal domain BRM88_03885 SM00116 Domain in cystathionine beta-synthase and other proteins. BRM88_03950 SM00382 ATPases associated with a variety of cellular activities BRM88_03960 SM00893 Electron transfer flavoprotein domain BRM88_03965 SM00893 Electron transfer flavoprotein domain BRM88_04000 SM00882 Coenzyme A transferase BRM88_04005 SM00882 Coenzyme A transferase BRM88_04040 SM00382 ATPases associated with a variety of cellular activities BRM88_04055 SM00528 Domain in histone-like proteins of HNS family BRM88_04120 SM00656 BRM88_04120 BRM88_04220 SM01211 BRM88_04220 BRM88_04250 SM00382 ATPases associated with a variety of cellular activities BRM88_04320 SM00345 helix_turn_helix gluconate operon transcriptional repressor BRM88_04320 SM00866 BRM88_04320 BRM88_04405 SM00487 DEAD-like helicases superfamily BRM88_04410 SM01126 BRM88_04410 BRM88_04445 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BRM88_04450 SM00822 BRM88_04450 BRM88_04460 SM00825 Beta-ketoacyl synthase BRM88_04505 SM00382 ATPases associated with a variety of cellular activities BRM88_04620 SM00271 DnaJ molecular chaperone homology domain BRM88_04625 SM00448 cheY-homologous receiver domain BRM88_04630 SM00244 prohibitin homologues BRM88_04635 SM00244 prohibitin homologues BRM88_04645 SM00788 Adenylosuccinate synthetase BRM88_04755 SM01329 BRM88_04755 BRM88_04760 SM00917 LeuA allosteric (dimerisation) domain BRM88_04795 SM00862 Transcriptional regulatory protein, C terminal BRM88_04800 SM00342 helix_turn_helix, arabinose operon control protein BRM88_04835 SM01126 BRM88_04835 BRM88_04875 SM00464 Found in ATP-dependent protease La (LON) BRM88_04915 SM00838 Elongation factor G C-terminus BRM88_05040 SM01126 BRM88_05040 BRM88_05115 SM01126 BRM88_05115 BRM88_05120 SM01329 BRM88_05120 BRM88_05185 SM00382 ATPases associated with a variety of cellular activities BRM88_05185 SM00994 ClpX C4-type zinc finger BRM88_05185 SM01086 C-terminal, D2-small domain, of ClpB protein BRM88_05190 SM00382 ATPases associated with a variety of cellular activities BRM88_05190 SM00464 Found in ATP-dependent protease La (LON) BRM88_05195 SM00411 bacterial (prokaryotic) histone like domain BRM88_05220 SM00257 Lysin motif BRM88_05225 SM00849 Metallo-beta-lactamase superfamily BRM88_05240 SM00479 BRM88_05240 BRM88_05250 SM00331 Sigma factor PP2C-like phosphatases BRM88_05250 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BRM88_05330 SM01126 BRM88_05330 BRM88_05355 SM00849 Metallo-beta-lactamase superfamily BRM88_05360 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_05395 SM00382 ATPases associated with a variety of cellular activities BRM88_05405 SM00493 BRM88_05405 BRM88_05420 SM00460 Transglutaminase/protease-like homologues BRM88_05430 SM00382 ATPases associated with a variety of cellular activities BRM88_05530 SM00450 Rhodanese Homology Domain BRM88_05565 SM01154 BRM88_05565 BRM88_05575 SM00642 Alpha-amylase domain BRM88_05595 SM00354 helix_turn _helix lactose operon repressor BRM88_05600 SM00822 BRM88_05600 BRM88_05620 SM00448 cheY-homologous receiver domain BRM88_05620 SM00862 Transcriptional regulatory protein, C terminal BRM88_05625 SM00387 Histidine kinase-like ATPases BRM88_05625 SM00388 His Kinase A (phosphoacceptor) domain BRM88_05635 SM00421 helix_turn_helix, Lux Regulon BRM88_05635 SM00448 cheY-homologous receiver domain BRM88_05670 SM00387 Histidine kinase-like ATPases BRM88_05670 SM00388 His Kinase A (phosphoacceptor) domain BRM88_05670 SM00448 cheY-homologous receiver domain BRM88_05690 SM00919 Malic enzyme, NAD binding domain BRM88_05690 SM01274 BRM88_05690 BRM88_05780 SM01011 Aminopeptidase P, N-terminal domain BRM88_05815 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_05840 SM00072 Guanylate kinase homologues. BRM88_05855 SM01409 BRM88_05855 BRM88_05860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BRM88_05860 SM00954 Region found in RelA / SpoT proteins BRM88_05870 SM00487 DEAD-like helicases superfamily BRM88_05870 SM00490 helicase superfamily c-terminal domain BRM88_05920 SM00965 Secretin and TonB N terminus short domain BRM88_05945 SM00382 ATPases associated with a variety of cellular activities BRM88_05960 SM00327 von Willebrand factor (vWF) type A domain BRM88_05965 SM00028 Tetratricopeptide repeats BRM88_05965 SM00327 von Willebrand factor (vWF) type A domain BRM88_05990 SM00861 Transketolase, pyrimidine binding domain BRM88_06050 SM00448 cheY-homologous receiver domain BRM88_06050 SM00862 Transcriptional regulatory protein, C terminal BRM88_06055 SM00387 Histidine kinase-like ATPases BRM88_06055 SM00388 His Kinase A (phosphoacceptor) domain BRM88_06075 SM00382 ATPases associated with a variety of cellular activities BRM88_06090 SM00849 Metallo-beta-lactamase superfamily BRM88_06125 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BRM88_06140 SM01126 BRM88_06140 BRM88_06145 SM00387 Histidine kinase-like ATPases BRM88_06145 SM00388 His Kinase A (phosphoacceptor) domain BRM88_06150 SM00448 cheY-homologous receiver domain BRM88_06150 SM00862 Transcriptional regulatory protein, C terminal BRM88_06425 SM00422 helix_turn_helix, mercury resistance BRM88_06450 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BRM88_06460 SM00849 Metallo-beta-lactamase superfamily BRM88_06485 SM00421 helix_turn_helix, Lux Regulon BRM88_06535 SM00924 MgtE intracellular N domain BRM88_06585 SM00382 ATPases associated with a variety of cellular activities BRM88_06605 SM00116 Domain in cystathionine beta-synthase and other proteins. BRM88_06720 SM01126 BRM88_06720 BRM88_06735 SM00813 Alpha-L-arabinofuranosidase C-terminus BRM88_06755 SM00382 ATPases associated with a variety of cellular activities BRM88_06755 SM00962 SRP54-type protein, GTPase domain BRM88_06755 SM00963 SRP54-type protein, helical bundle domain BRM88_06810 SM00363 S4 RNA-binding domain BRM88_06845 SM00382 ATPases associated with a variety of cellular activities BRM88_06845 SM01086 C-terminal, D2-small domain, of ClpB protein BRM88_06930 SM00855 Phosphoglycerate mutase family BRM88_07020 SM00382 ATPases associated with a variety of cellular activities BRM88_07060 SM00862 Transcriptional regulatory protein, C terminal BRM88_07065 SM00342 helix_turn_helix, arabinose operon control protein BRM88_07105 SM01230 BRM88_07105 BRM88_07145 SM01126 BRM88_07145 BRM88_07190 SM00382 ATPases associated with a variety of cellular activities BRM88_07205 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BRM88_07245 SM00411 bacterial (prokaryotic) histone like domain BRM88_07280 SM00382 ATPases associated with a variety of cellular activities BRM88_07325 SM00732 Likely ribonuclease with RNase H fold. BRM88_07400 SM00267 diguanylate cyclase BRM88_07420 SM01126 BRM88_07420 BRM88_07595 SM00855 Phosphoglycerate mutase family BRM88_07620 SM00448 cheY-homologous receiver domain BRM88_07625 SM00138 Methyltransferase, chemotaxis proteins BRM88_07630 SM00052 Putative diguanylate phosphodiesterase BRM88_07630 SM00448 cheY-homologous receiver domain BRM88_07635 SM00260 Two component signalling adaptor domain BRM88_07640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_07640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_07645 SM00073 Histidine Phosphotransfer domain BRM88_07645 SM00260 Two component signalling adaptor domain BRM88_07645 SM00387 Histidine kinase-like ATPases BRM88_07645 SM01231 BRM88_07645 BRM88_07655 SM00487 DEAD-like helicases superfamily BRM88_07655 SM00490 helicase superfamily c-terminal domain BRM88_07655 SM00982 BRM88_07655 BRM88_07655 SM01058 CarD-like/TRCF domain BRM88_07685 SM00387 Histidine kinase-like ATPases BRM88_07685 SM00388 His Kinase A (phosphoacceptor) domain BRM88_07695 SM00645 Papain family cysteine protease BRM88_07720 SM00645 Papain family cysteine protease BRM88_07740 SM00645 Papain family cysteine protease BRM88_07820 SM00357 Cold shock protein domain BRM88_07935 SM00829 Enoylreductase BRM88_07960 SM00342 helix_turn_helix, arabinose operon control protein BRM88_07960 SM00478 endonuclease III BRM88_07960 SM01009 AlkA N-terminal domain BRM88_08005 SM00487 DEAD-like helicases superfamily BRM88_08005 SM00490 helicase superfamily c-terminal domain BRM88_08010 SM00052 Putative diguanylate phosphodiesterase BRM88_08010 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_08010 SM00091 PAS domain BRM88_08010 SM00267 diguanylate cyclase BRM88_08015 SM00363 S4 RNA-binding domain BRM88_08055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_08055 SM00387 Histidine kinase-like ATPases BRM88_08055 SM00388 His Kinase A (phosphoacceptor) domain BRM88_08060 SM00448 cheY-homologous receiver domain BRM88_08060 SM00862 Transcriptional regulatory protein, C terminal BRM88_08090 SM00382 ATPases associated with a variety of cellular activities BRM88_08220 SM00382 ATPases associated with a variety of cellular activities BRM88_08220 SM00448 cheY-homologous receiver domain BRM88_08225 SM00387 Histidine kinase-like ATPases BRM88_08225 SM00388 His Kinase A (phosphoacceptor) domain BRM88_08235 SM00881 CoA binding domain BRM88_08410 SM00904 Riboflavin kinase BRM88_08455 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_08500 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BRM88_08500 SM00534 ATPase domain of DNA mismatch repair MUTS family BRM88_08525 SM00382 ATPases associated with a variety of cellular activities BRM88_08555 SM00834 Putative regulatory protein BRM88_08590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BRM88_08600 SM00382 ATPases associated with a variety of cellular activities BRM88_08790 SM00530 Helix-turn-helix XRE-family like proteins BRM88_08985 SM00448 cheY-homologous receiver domain BRM88_08995 SM00341 Helicase and RNase D C-terminal BRM88_08995 SM00487 DEAD-like helicases superfamily BRM88_08995 SM00490 helicase superfamily c-terminal domain BRM88_08995 SM00956 BRM88_08995 BRM88_09010 SM00382 ATPases associated with a variety of cellular activities BRM88_09010 SM00487 DEAD-like helicases superfamily BRM88_09010 SM00490 helicase superfamily c-terminal domain BRM88_09010 SM00847 Helicase associated domain (HA2) Add an annotation BRM88_09065 SM00954 Region found in RelA / SpoT proteins BRM88_09090 SM00491 BRM88_09090 BRM88_09115 SM00448 cheY-homologous receiver domain BRM88_09120 SM00448 cheY-homologous receiver domain BRM88_09125 SM00260 Two component signalling adaptor domain BRM88_09130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_09135 SM00073 Histidine Phosphotransfer domain BRM88_09135 SM00260 Two component signalling adaptor domain BRM88_09135 SM00387 Histidine kinase-like ATPases BRM88_09135 SM00448 cheY-homologous receiver domain BRM88_09135 SM01231 BRM88_09135 BRM88_09145 SM00260 Two component signalling adaptor domain BRM88_09190 SM00369 Leucine-rich repeats, typical (most populated) subfamily BRM88_09245 SM01149 BRM88_09245 BRM88_09305 SM00382 ATPases associated with a variety of cellular activities BRM88_09310 SM00758 BRM88_09310 BRM88_09310 SM01217 BRM88_09310 BRM88_09330 SM00636 BRM88_09330 BRM88_09335 SM00812 Alpha-L-fucosidase BRM88_09385 SM00244 prohibitin homologues BRM88_09535 SM00867 YceI-like domain BRM88_09545 SM00867 YceI-like domain BRM88_09550 SM00387 Histidine kinase-like ATPases BRM88_09550 SM00388 His Kinase A (phosphoacceptor) domain BRM88_09550 SM00448 cheY-homologous receiver domain BRM88_09555 SM00387 Histidine kinase-like ATPases BRM88_09555 SM00388 His Kinase A (phosphoacceptor) domain BRM88_09555 SM00448 cheY-homologous receiver domain BRM88_09560 SM00387 Histidine kinase-like ATPases BRM88_09560 SM00388 His Kinase A (phosphoacceptor) domain BRM88_09560 SM00448 cheY-homologous receiver domain BRM88_09580 SM00812 Alpha-L-fucosidase BRM88_09605 SM00530 Helix-turn-helix XRE-family like proteins BRM88_09655 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_09660 SM00838 Elongation factor G C-terminus BRM88_09675 SM00358 Double-stranded RNA binding motif BRM88_09675 SM00535 Ribonuclease III family BRM88_09690 SM00448 cheY-homologous receiver domain BRM88_09700 SM01118 BRM88_09700 BRM88_09745 SM00357 Cold shock protein domain BRM88_09765 SM00487 DEAD-like helicases superfamily BRM88_09765 SM00490 helicase superfamily c-terminal domain BRM88_09795 SM00267 diguanylate cyclase BRM88_09815 SM00869 Autotransporter beta-domain BRM88_09820 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BRM88_10215 SM00382 ATPases associated with a variety of cellular activities BRM88_10235 SM00481 DNA polymerase alpha chain like domain BRM88_10275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_10330 SM00972 Spore Coat Protein U domain BRM88_10345 SM00972 Spore Coat Protein U domain BRM88_10355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BRM88_10385 SM01172 BRM88_10385 BRM88_10390 SM00710 Parallel beta-helix repeats BRM88_10390 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BRM88_10420 SM00434 DNA Topoisomerase IV BRM88_10430 SM00347 helix_turn_helix multiple antibiotic resistance protein BRM88_10490 SM00861 Transketolase, pyrimidine binding domain BRM88_10495 SM00507 HNH nucleases BRM88_10565 SM00271 DnaJ molecular chaperone homology domain BRM88_10615 SM00382 ATPases associated with a variety of cellular activities BRM88_10640 SM00861 Transketolase, pyrimidine binding domain BRM88_10650 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BRM88_10655 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_10730 SM00382 ATPases associated with a variety of cellular activities BRM88_10735 SM00345 helix_turn_helix gluconate operon transcriptional repressor BRM88_10755 SM00984 UDP binding domain BRM88_10775 SM00354 helix_turn _helix lactose operon repressor BRM88_10795 SM01018 B12 binding domain BRM88_10805 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BRM88_10840 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_10840 SM00357 Cold shock protein domain BRM88_10840 SM00955 BRM88_10840 BRM88_10860 SM00967 RNA 2'-O ribose methyltransferase substrate binding BRM88_10885 SM01126 BRM88_10885 BRM88_10940 SM01126 BRM88_10940 BRM88_10970 SM01126 BRM88_10970 BRM88_11145 SM01007 Class II Aldolase and Adducin N-terminal domain BRM88_11230 SM00382 ATPases associated with a variety of cellular activities BRM88_11245 SM01126 BRM88_11245 BRM88_11260 SM00363 S4 RNA-binding domain BRM88_11285 SM00354 helix_turn _helix lactose operon repressor BRM88_11365 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_11370 SM00411 bacterial (prokaryotic) histone like domain BRM88_11390 SM00822 BRM88_11390 BRM88_11420 SM00116 Domain in cystathionine beta-synthase and other proteins. BRM88_11420 SM01240 BRM88_11420 BRM88_11485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_11500 SM00529 Helix-turn-helix diphteria tox regulatory element BRM88_11510 SM00479 BRM88_11510 BRM88_11580 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_11580 SM00732 Likely ribonuclease with RNase H fold. BRM88_11595 SM00448 cheY-homologous receiver domain BRM88_11600 SM00387 Histidine kinase-like ATPases BRM88_11610 SM00014 Acid phosphatase homologues BRM88_12060 SM01126 BRM88_12060 BRM88_12110 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BRM88_12110 SM00465 GIY-YIG type nucleases (URI domain) BRM88_12120 SM00226 Low molecular weight phosphatase family BRM88_12135 SM00382 ATPases associated with a variety of cellular activities BRM88_12150 SM00849 Metallo-beta-lactamase superfamily BRM88_12155 SM01126 BRM88_12155 BRM88_12170 SM00382 ATPases associated with a variety of cellular activities BRM88_12230 SM00382 ATPases associated with a variety of cellular activities BRM88_12280 SM00448 cheY-homologous receiver domain BRM88_12285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_12285 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_12285 SM00091 PAS domain BRM88_12285 SM00387 Histidine kinase-like ATPases BRM88_12285 SM00388 His Kinase A (phosphoacceptor) domain BRM88_12285 SM00448 cheY-homologous receiver domain BRM88_12315 SM00267 diguanylate cyclase BRM88_12370 SM00382 ATPases associated with a variety of cellular activities BRM88_12420 SM00347 helix_turn_helix multiple antibiotic resistance protein BRM88_12450 SM00631 BRM88_12450 BRM88_12455 SM01217 BRM88_12455 BRM88_12470 SM00052 Putative diguanylate phosphodiesterase BRM88_12470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_12470 SM00267 diguanylate cyclase BRM88_12555 SM00646 BRM88_12555 BRM88_12580 SM00869 Autotransporter beta-domain BRM88_12605 SM00387 Histidine kinase-like ATPases BRM88_12605 SM00388 His Kinase A (phosphoacceptor) domain BRM88_12610 SM00421 helix_turn_helix, Lux Regulon BRM88_12610 SM00448 cheY-homologous receiver domain BRM88_12615 SM00869 Autotransporter beta-domain BRM88_12655 SM00830 Chorismate mutase type II BRM88_12680 SM00240 Forkhead associated domain BRM88_12700 SM00345 helix_turn_helix gluconate operon transcriptional repressor BRM88_12700 SM00866 BRM88_12700 BRM88_12745 SM00434 DNA Topoisomerase IV BRM88_12770 SM00292 breast cancer carboxy-terminal domain BRM88_12770 SM00532 Ligase N family BRM88_12780 SM00771 ZipA, C-terminal domain (FtsZ-binding) BRM88_12785 SM00968 SMC proteins Flexible Hinge Domain BRM88_12840 SM00947 Carbonic anhydrase BRM88_12865 SM00479 BRM88_12865 BRM88_12900 SM00981 BRM88_12900 BRM88_12930 SM00644 BRM88_12930 BRM88_12940 SM00450 Rhodanese Homology Domain BRM88_12965 SM00478 endonuclease III BRM88_12975 SM00947 Carbonic anhydrase BRM88_13035 SM00382 ATPases associated with a variety of cellular activities BRM88_13050 SM00479 BRM88_13050 BRM88_13110 SM01323 BRM88_13110 BRM88_13125 SM00344 helix_turn_helix ASNC type BRM88_13230 SM00387 Histidine kinase-like ATPases BRM88_13245 SM00450 Rhodanese Homology Domain BRM88_13255 SM01126 BRM88_13255 BRM88_13315 SM00852 Probable molybdopterin binding domain BRM88_13320 SM00382 ATPases associated with a variety of cellular activities BRM88_13325 SM00564 beta-propeller repeat BRM88_13340 SM00028 Tetratricopeptide repeats BRM88_13350 SM00562 BRM88_13350 BRM88_13390 SM00382 ATPases associated with a variety of cellular activities BRM88_13415 SM00382 ATPases associated with a variety of cellular activities BRM88_13415 SM00843 BRM88_13415 BRM88_13440 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_13445 SM00382 ATPases associated with a variety of cellular activities BRM88_13445 SM01086 C-terminal, D2-small domain, of ClpB protein BRM88_13470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_13485 SM00052 Putative diguanylate phosphodiesterase BRM88_13485 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_13485 SM00091 PAS domain BRM88_13485 SM00267 diguanylate cyclase BRM88_13490 SM00091 PAS domain BRM88_13490 SM00387 Histidine kinase-like ATPases BRM88_13495 SM00052 Putative diguanylate phosphodiesterase BRM88_13495 SM00267 diguanylate cyclase BRM88_13495 SM00448 cheY-homologous receiver domain BRM88_13500 SM00387 Histidine kinase-like ATPases BRM88_13515 SM00858 BRM88_13515 BRM88_13520 SM00260 Two component signalling adaptor domain BRM88_13520 SM00448 cheY-homologous receiver domain BRM88_13570 SM00047 Lysozyme subfamily 2 BRM88_13610 SM00421 helix_turn_helix, Lux Regulon BRM88_13610 SM00448 cheY-homologous receiver domain BRM88_13620 SM00448 cheY-homologous receiver domain BRM88_13625 SM00382 ATPases associated with a variety of cellular activities BRM88_13645 SM00822 BRM88_13645 BRM88_13650 SM00822 BRM88_13650 BRM88_13705 SM00382 ATPases associated with a variety of cellular activities BRM88_13760 SM00267 diguanylate cyclase BRM88_13765 SM00267 diguanylate cyclase BRM88_13770 SM00052 Putative diguanylate phosphodiesterase BRM88_13770 SM00267 diguanylate cyclase BRM88_13785 SM00382 ATPases associated with a variety of cellular activities BRM88_13785 SM00962 SRP54-type protein, GTPase domain BRM88_13800 SM00448 cheY-homologous receiver domain BRM88_13810 SM00073 Histidine Phosphotransfer domain BRM88_13810 SM00260 Two component signalling adaptor domain BRM88_13810 SM00387 Histidine kinase-like ATPases BRM88_13810 SM01231 BRM88_13810 BRM88_13965 SM01126 BRM88_13965 BRM88_13975 SM00382 ATPases associated with a variety of cellular activities BRM88_13980 SM00382 ATPases associated with a variety of cellular activities BRM88_14010 SM01126 BRM88_14010 BRM88_14035 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BRM88_14045 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BRM88_14065 SM00859 Semialdehyde dehydrogenase, NAD binding domain BRM88_14105 SM00840 BRM88_14105 BRM88_14120 SM00245 tail specific protease BRM88_14130 SM01234 BRM88_14130 BRM88_14245 SM00841 Elongation factor P, C-terminal BRM88_14245 SM01185 BRM88_14245 BRM88_14255 SM00052 Putative diguanylate phosphodiesterase BRM88_14255 SM00267 diguanylate cyclase BRM88_14255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_14300 SM00382 ATPases associated with a variety of cellular activities BRM88_14305 SM00382 ATPases associated with a variety of cellular activities BRM88_14305 SM00487 DEAD-like helicases superfamily BRM88_14305 SM00490 helicase superfamily c-terminal domain BRM88_14330 SM00357 Cold shock protein domain BRM88_14340 SM01322 BRM88_14340 BRM88_14350 SM00052 Putative diguanylate phosphodiesterase BRM88_14350 SM00267 diguanylate cyclase BRM88_14365 SM00822 BRM88_14365 BRM88_14390 SM00853 MutL C terminal dimerisation domain BRM88_14390 SM01340 BRM88_14390 BRM88_14395 SM00646 BRM88_14395 BRM88_14445 SM00474 3'-5' exonuclease BRM88_14465 SM00528 Domain in histone-like proteins of HNS family BRM88_14525 SM01126 BRM88_14525 BRM88_14610 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_14635 SM00116 Domain in cystathionine beta-synthase and other proteins. BRM88_14635 SM01091 Transporter associated domain BRM88_14670 SM00382 ATPases associated with a variety of cellular activities BRM88_14700 SM01230 BRM88_14700 BRM88_14710 SM01230 BRM88_14710 BRM88_14720 SM00267 diguanylate cyclase BRM88_14720 SM00448 cheY-homologous receiver domain BRM88_14785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_14785 SM00091 PAS domain BRM88_14785 SM00387 Histidine kinase-like ATPases BRM88_14785 SM00388 His Kinase A (phosphoacceptor) domain BRM88_14785 SM00448 cheY-homologous receiver domain BRM88_14785 SM01079 BRM88_14785 BRM88_14790 SM00448 cheY-homologous receiver domain BRM88_14790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BRM88_14830 SM01126 BRM88_14830 BRM88_15090 SM00260 Two component signalling adaptor domain BRM88_15100 SM00448 cheY-homologous receiver domain BRM88_15105 SM00073 Histidine Phosphotransfer domain BRM88_15105 SM00260 Two component signalling adaptor domain BRM88_15105 SM00387 Histidine kinase-like ATPases BRM88_15105 SM01231 BRM88_15105 BRM88_15125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15145 SM01126 BRM88_15145 BRM88_15150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_15160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_15165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_15170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_15175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_15195 SM00260 Two component signalling adaptor domain BRM88_15220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BRM88_15220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_15225 SM00138 Methyltransferase, chemotaxis proteins BRM88_15235 SM00448 cheY-homologous receiver domain BRM88_15240 SM00052 Putative diguanylate phosphodiesterase BRM88_15240 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_15240 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_15240 SM00091 PAS domain BRM88_15240 SM00267 diguanylate cyclase BRM88_15270 SM00966 SpoVT / AbrB like domain BRM88_15295 SM00073 Histidine Phosphotransfer domain BRM88_15295 SM00387 Histidine kinase-like ATPases BRM88_15295 SM00388 His Kinase A (phosphoacceptor) domain BRM88_15295 SM00448 cheY-homologous receiver domain BRM88_15305 SM00448 cheY-homologous receiver domain BRM88_15305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BRM88_15320 SM00850 LytTr DNA-binding domain BRM88_15385 SM00851 MGS-like domain BRM88_15385 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BRM88_15395 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BRM88_15440 SM00899 BRM88_15440 BRM88_15460 SM00822 BRM88_15460 BRM88_15465 SM00841 Elongation factor P, C-terminal BRM88_15465 SM01185 BRM88_15465 BRM88_15505 SM00758 BRM88_15505 BRM88_15525 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BRM88_15550 SM01130 BRM88_15550 BRM88_15570 SM00670 Large family of predicted nucleotide-binding domains BRM88_15670 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BRM88_15685 SM00382 ATPases associated with a variety of cellular activities BRM88_15725 SM00382 ATPases associated with a variety of cellular activities BRM88_15735 SM01103 BRM88_15735 BRM88_15745 SM00257 Lysin motif BRM88_15765 SM00463 Small MutS-related domain BRM88_15800 SM01192 BRM88_15800 BRM88_15800 SM01193 BRM88_15800 BRM88_15825 SM00387 Histidine kinase-like ATPases BRM88_15825 SM00433 TopoisomeraseII BRM88_15860 SM01091 Transporter associated domain BRM88_15905 SM00382 ATPases associated with a variety of cellular activities BRM88_15915 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_16180 SM00448 cheY-homologous receiver domain BRM88_16180 SM00862 Transcriptional regulatory protein, C terminal BRM88_16190 SM00387 Histidine kinase-like ATPases BRM88_16225 SM00331 Sigma factor PP2C-like phosphatases BRM88_16225 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BRM88_16250 SM00240 Forkhead associated domain BRM88_16280 SM00382 ATPases associated with a variety of cellular activities BRM88_16280 SM01086 C-terminal, D2-small domain, of ClpB protein BRM88_16430 SM00363 S4 RNA-binding domain BRM88_16435 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_16450 SM00421 helix_turn_helix, Lux Regulon BRM88_16450 SM00448 cheY-homologous receiver domain BRM88_16455 SM00450 Rhodanese Homology Domain BRM88_16480 SM00984 UDP binding domain BRM88_16530 SM01126 BRM88_16530 BRM88_16540 SM01126 BRM88_16540 BRM88_16585 SM00852 Probable molybdopterin binding domain BRM88_16705 SM00944 Pro-kumamolisin, activation domain BRM88_16770 SM01130 BRM88_16770 BRM88_16795 SM00342 helix_turn_helix, arabinose operon control protein BRM88_16800 SM00382 ATPases associated with a variety of cellular activities BRM88_16800 SM00962 SRP54-type protein, GTPase domain BRM88_16800 SM00963 SRP54-type protein, helical bundle domain BRM88_16815 SM00478 endonuclease III BRM88_16825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_16825 SM00091 PAS domain BRM88_16825 SM00387 Histidine kinase-like ATPases BRM88_16825 SM00388 His Kinase A (phosphoacceptor) domain BRM88_16825 SM00448 cheY-homologous receiver domain BRM88_17010 SM00422 helix_turn_helix, mercury resistance BRM88_17015 SM00411 bacterial (prokaryotic) histone like domain BRM88_17020 SM00873 B3/4 domain BRM88_17020 SM00874 tRNA synthetase B5 domain BRM88_17020 SM00896 Ferredoxin-fold anticodon binding domain BRM88_17045 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BRM88_17075 SM00487 DEAD-like helicases superfamily BRM88_17075 SM00490 helicase superfamily c-terminal domain BRM88_17160 SM01001 AIR carboxylase BRM88_17180 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_17180 SM00322 K homology RNA-binding domain BRM88_17185 SM01387 BRM88_17185 BRM88_17205 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_17205 SM00322 K homology RNA-binding domain BRM88_17255 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BRM88_17260 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BRM88_17305 SM00822 BRM88_17305 BRM88_17335 SM00052 Putative diguanylate phosphodiesterase BRM88_17335 SM00267 diguanylate cyclase BRM88_17335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_17405 SM00859 Semialdehyde dehydrogenase, NAD binding domain BRM88_17440 SM00257 Lysin motif BRM88_17480 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_17530 SM01160 BRM88_17530 BRM88_17545 SM01126 BRM88_17545 BRM88_17595 SM00098 Alkaline phosphatase homologues BRM88_17600 SM00977 TilS substrate C-terminal domain BRM88_17660 SM00316 Ribosomal protein S1-like RNA-binding domain BRM88_17765 SM01126 BRM88_17765 BRM88_17820 SM01126 BRM88_17820 BRM88_17830 SM00642 Alpha-amylase domain BRM88_17850 SM01126 BRM88_17850 BRM88_17875 SM00528 Domain in histone-like proteins of HNS family BRM88_17920 SM00869 Autotransporter beta-domain BRM88_18005 SM00967 RNA 2'-O ribose methyltransferase substrate binding BRM88_18025 SM01126 BRM88_18025 BRM88_18095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_18095 SM00387 Histidine kinase-like ATPases BRM88_18140 SM00506 Appr-1"-p processing enzyme BRM88_18195 SM01060 BRM88_18195 BRM88_18240 SM00091 PAS domain BRM88_18240 SM00342 helix_turn_helix, arabinose operon control protein BRM88_18310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BRM88_18320 SM00481 DNA polymerase alpha chain like domain BRM88_18345 SM00966 SpoVT / AbrB like domain BRM88_18370 SM00855 Phosphoglycerate mutase family BRM88_18395 SM00220 Serine/Threonine protein kinases, catalytic domain BRM88_18405 SM00487 DEAD-like helicases superfamily BRM88_18470 SM00487 DEAD-like helicases superfamily BRM88_18470 SM00490 helicase superfamily c-terminal domain BRM88_18595 SM00382 ATPases associated with a variety of cellular activities BRM88_18595 SM01086 C-terminal, D2-small domain, of ClpB protein BRM88_18820 SM00478 endonuclease III BRM88_18835 SM00421 helix_turn_helix, Lux Regulon BRM88_18835 SM00448 cheY-homologous receiver domain BRM88_18875 SM00387 Histidine kinase-like ATPases BRM88_18875 SM00388 His Kinase A (phosphoacceptor) domain BRM88_18880 SM00448 cheY-homologous receiver domain BRM88_18880 SM00862 Transcriptional regulatory protein, C terminal BRM88_18915 SM00382 ATPases associated with a variety of cellular activities BRM88_18950 SM00990 BRM88_18950 BRM88_18995 SM00662 RNA polymerases D BRM88_19000 SM00363 S4 RNA-binding domain BRM88_19000 SM01390 BRM88_19000 BRM88_19060 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BRM88_19065 SM01374 BRM88_19065 BRM88_19085 SM00322 K homology RNA-binding domain BRM88_19100 SM01382 BRM88_19100 BRM88_19100 SM01383 BRM88_19100 BRM88_19120 SM01403 BRM88_19120 BRM88_19140 SM00838 Elongation factor G C-terminus BRM88_19140 SM00889 Elongation factor G, domain IV BRM88_19155 SM00663 RNA polymerase I subunit A N-terminus BRM88_19180 SM00649 Ribosomal protein L11/L12 BRM88_19190 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BRM88_19190 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BRM88_19240 SM01400 BRM88_19240 BRM88_19260 SM00028 Tetratricopeptide repeats BRM88_19270 SM00937 BRM88_19270 BRM88_19275 SM00028 Tetratricopeptide repeats BRM88_19280 SM00852 Probable molybdopterin binding domain BRM88_19400 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BRM88_19400 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BRM88_19415 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BRM88_19415 SM00475 5'-3' exonuclease BRM88_19505 SM01126 BRM88_19505 BRM88_19575 SM00448 cheY-homologous receiver domain BRM88_19575 SM00862 Transcriptional regulatory protein, C terminal BRM88_19580 SM00387 Histidine kinase-like ATPases BRM88_19580 SM00388 His Kinase A (phosphoacceptor) domain BRM88_19600 SM00014 Acid phosphatase homologues BRM88_19655 SM00855 Phosphoglycerate mutase family BRM88_19680 SM00829 Enoylreductase BRM88_19690 SM00382 ATPases associated with a variety of cellular activities BRM88_19740 SM00829 Enoylreductase BRM88_19790 SM00387 Histidine kinase-like ATPases BRM88_19790 SM00448 cheY-homologous receiver domain BRM88_19795 SM00448 cheY-homologous receiver domain BRM88_19900 SM00347 helix_turn_helix multiple antibiotic resistance protein BRM88_19945 SM01126 BRM88_19945 BRM88_20005 SM00650 Ribosomal RNA adenine dimethylases BRM88_20080 SM00387 Histidine kinase-like ATPases BRM88_20080 SM00388 His Kinase A (phosphoacceptor) domain BRM88_20095 SM00382 ATPases associated with a variety of cellular activities BRM88_20115 SM00382 ATPases associated with a variety of cellular activities BRM88_20260 SM00996 S-adenosyl-L-homocysteine hydrolase BRM88_20260 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BRM88_20320 SM00829 Enoylreductase BRM88_20360 SM00957 SecA DEAD-like domain BRM88_20360 SM00958 SecA preprotein cross-linking domain BRM88_20380 SM00864 Tubulin/FtsZ family, GTPase domain BRM88_20380 SM00865 Tubulin/FtsZ family, C-terminal domain BRM88_20385 SM00842 Cell division protein FtsA BRM88_20490 SM00448 cheY-homologous receiver domain BRM88_20490 SM00862 Transcriptional regulatory protein, C terminal BRM88_20495 SM00387 Histidine kinase-like ATPases BRM88_20495 SM00388 His Kinase A (phosphoacceptor) domain BRM88_20605 SM00382 ATPases associated with a variety of cellular activities BRM88_20635 SM00829 Enoylreductase BRM88_20650 SM00448 cheY-homologous receiver domain BRM88_20650 SM00862 Transcriptional regulatory protein, C terminal BRM88_20655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_20655 SM00387 Histidine kinase-like ATPases BRM88_20655 SM00388 His Kinase A (phosphoacceptor) domain BRM88_20695 SM00387 Histidine kinase-like ATPases BRM88_20695 SM00388 His Kinase A (phosphoacceptor) domain BRM88_20825 SM01126 BRM88_20825 BRM88_20865 SM01126 BRM88_20865 BRM88_20910 SM00354 helix_turn _helix lactose operon repressor BRM88_20920 SM00345 helix_turn_helix gluconate operon transcriptional repressor BRM88_20920 SM00866 BRM88_20920 BRM88_20995 SM00387 Histidine kinase-like ATPases BRM88_20995 SM00388 His Kinase A (phosphoacceptor) domain BRM88_20995 SM00448 cheY-homologous receiver domain BRM88_21000 SM00448 cheY-homologous receiver domain BRM88_21005 SM00387 Histidine kinase-like ATPases BRM88_21005 SM00388 His Kinase A (phosphoacceptor) domain BRM88_21010 SM00749 bacterial OsmY and nodulation domain BRM88_21020 SM01350 BRM88_21020 BRM88_21065 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_21065 SM00245 tail specific protease BRM88_21080 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_21105 SM00936 Penicillin-binding protein 5, C-terminal domain BRM88_21135 SM00257 Lysin motif BRM88_21145 SM01126 BRM88_21145 BRM88_21200 SM00268 Actin BRM88_21250 SM00267 diguanylate cyclase BRM88_21255 SM01263 BRM88_21255 BRM88_21270 SM00382 ATPases associated with a variety of cellular activities BRM88_21270 SM01086 C-terminal, D2-small domain, of ClpB protein BRM88_21360 SM00448 cheY-homologous receiver domain BRM88_21360 SM00850 LytTr DNA-binding domain BRM88_21415 SM00637 BRM88_21415 BRM88_21430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_21430 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BRM88_21430 SM00091 PAS domain BRM88_21430 SM00267 diguanylate cyclase BRM88_21440 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BRM88_21510 SM00060 Fibronectin type 3 domain BRM88_21605 SM00046 Diacylglycerol kinase catalytic domain (presumed) BRM88_21620 SM00271 DnaJ molecular chaperone homology domain BRM88_21720 SM00347 helix_turn_helix multiple antibiotic resistance protein BRM88_21755 SM01126 BRM88_21755 BRM88_21870 SM00644 BRM88_21870 BRM88_21880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BRM88_21900 SM01126 BRM88_21900 BRM88_21935 SM01126 BRM88_21935 BRM88_21980 SM01126 BRM88_21980 BRM88_22000 SM01217 BRM88_22000 BRM88_22005 SM00905 Dihydroneopterin aldolase BRM88_22040 SM00400 zinc finger BRM88_22040 SM00493 BRM88_22040 BRM88_22040 SM00766 DNA primase DnaG DnaB-binding BRM88_22140 SM01126 BRM88_22140 BRM88_22195 SM00100 Cyclic nucleotide-monophosphate binding domain BRM88_22195 SM00419 helix_turn_helix, cAMP Regulatory protein BRM88_22215 SM00903 Flavin reductase like domain BRM88_22355 SM01150 BRM88_22355 BRM88_22370 SM01126 BRM88_22370 BRM88_22380 SM01126 BRM88_22380 BRM88_22395 SM00450 Rhodanese Homology Domain BRM88_22420 SM00387 Histidine kinase-like ATPases BRM88_22420 SM00388 His Kinase A (phosphoacceptor) domain BRM88_22425 SM00382 ATPases associated with a variety of cellular activities BRM88_22425 SM00448 cheY-homologous receiver domain BRM88_22510 SM00347 helix_turn_helix multiple antibiotic resistance protein BRM88_22520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BRM88_22610 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BRM88_22610 SM00474 3'-5' exonuclease BRM88_22610 SM00475 5'-3' exonuclease BRM88_22610 SM00482 DNA polymerase A domain BRM88_22675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BRM88_22675 SM00331 Sigma factor PP2C-like phosphatases BRM88_22695 SM00867 YceI-like domain BRM88_22765 SM01126 BRM88_22765 BRM88_22810 SM00883 Chaperonin 10 Kd subunit BRM88_22845 SM00986 Uracil DNA glycosylase superfamily BRM88_22845 SM00987 UreE urease accessory protein, C-terminal domain BRM88_22850 SM00448 cheY-homologous receiver domain BRM88_22860 SM00382 ATPases associated with a variety of cellular activities BRM88_22865 SM00487 DEAD-like helicases superfamily BRM88_22865 SM00490 helicase superfamily c-terminal domain BRM88_22875 SM00357 Cold shock protein domain BRM88_22875 SM00382 ATPases associated with a variety of cellular activities BRM88_22875 SM00959 Rho termination factor, N-terminal domain BRM88_22935 SM00563 Phosphate acyltransferases BRM88_23070 SM00448 cheY-homologous receiver domain BRM88_23070 SM00862 Transcriptional regulatory protein, C terminal BRM88_23165 SM01126 BRM88_23165 BRM88_23260 SM00878 Biotin carboxylase C-terminal domain BRM88_23325 SM00833 Cobalamin synthesis protein cobW C-terminal domain BRM88_23370 SM00836 DALR anticodon binding domain BRM88_23380 SM00382 ATPases associated with a variety of cellular activities BRM88_23485 SM00354 helix_turn _helix lactose operon repressor BRM88_23500 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BRM88_23510 SM00758 BRM88_23510 BRM88_23510 SM01217 BRM88_23510 BRM88_23540 SM00633 Glycosyl hydrolase family 10 BRM88_23595 SM01126 BRM88_23595 BRM88_23610 SM00052 Putative diguanylate phosphodiesterase BRM88_23660 SM00347 helix_turn_helix multiple antibiotic resistance protein BRM88_23700 SM00530 Helix-turn-helix XRE-family like proteins BRM88_23760 SM00530 Helix-turn-helix XRE-family like proteins BRM88_23810 SM01126 BRM88_23810 BRM88_23830 SM00382 ATPases associated with a variety of cellular activities BRM88_23830 SM00448 cheY-homologous receiver domain BRM88_23835 SM00387 Histidine kinase-like ATPases BRM88_23835 SM00388 His Kinase A (phosphoacceptor) domain BRM88_23845 SM00938 Nitrogen regulatory protein P-II BRM88_23850 SM01230 BRM88_23850 BRM88_23875 SM00028 Tetratricopeptide repeats BRM88_23890 SM00563 Phosphate acyltransferases BRM88_23900 SM00155 Phospholipase D. Active site motifs. BRM88_23905 SM00867 YceI-like domain BRM88_23910 SM00855 Phosphoglycerate mutase family BRM88_23935 SM00530 Helix-turn-helix XRE-family like proteins BRM88_23965 SM00382 ATPases associated with a variety of cellular activities BRM88_23980 SM00382 ATPases associated with a variety of cellular activities BRM88_24035 SM00829 Enoylreductase BRM88_24065 SM00487 DEAD-like helicases superfamily BRM88_24065 SM00490 helicase superfamily c-terminal domain BRM88_24065 SM00847 Helicase associated domain (HA2) Add an annotation BRM88_24075 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BRM88_24135 SM00421 helix_turn_helix, Lux Regulon BRM88_24135 SM00448 cheY-homologous receiver domain BRM88_24265 SM00155 Phospholipase D. Active site motifs. BRM88_24295 SM01126 BRM88_24295 BRM88_24340 SM00729 Elongator protein 3, MiaB family, Radical SAM BRM88_24375 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BRM88_24375 SM00245 tail specific protease BRM88_24480 SM00155 Phospholipase D. Active site motifs. BRM88_24595 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BRM88_24625 SM00014 Acid phosphatase homologues BRM88_24635 SM00028 Tetratricopeptide repeats